BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045611
         (181 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
           Superoxide Dismutase
          Length = 98

 Score = 36.6 bits (83), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 52  LQTVEIKIKMDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPEKVLERVRHRT 111
           L T+E  ++M C+ C   V+KS++G+ GV  VEV  +  ++ ++    P + ++ +   T
Sbjct: 18  LCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLE-DQMVLVHTTLPSQEVQALLEGT 76

Query: 112 GKKA 115
           G++A
Sbjct: 77  GRQA 80


>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
           Zinc(Ii) Atpase Ziaa In Its Apo Form
          Length = 111

 Score = 35.0 bits (79), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 52  LQTVEIKIK-MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPEKVLE 105
           L+T ++++  MDC  C+ +++ S+E +KGV +  V     +LTV    DP++V E
Sbjct: 7   LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT--YDPKQVSE 59


>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
           Zinc(Ii) Atpase Ziaa In Its Apo Form
          Length = 111

 Score = 35.0 bits (79), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 52  LQTVEIKIK-MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPEKVLE 105
           L+T ++++  MDC  C+ +++ S+E +KGV +  V     +LTV    DP++V E
Sbjct: 2   LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT--YDPKQVSE 54


>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
           Apo-Form
 pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
           Zn(Ii)-Form
          Length = 73

 Score = 34.7 bits (78), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 25/52 (48%)

Query: 61  MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPEKVLERVRHRTG 112
           MDC  C R+V+ +V  + GV QV+V     KL V    D    +E    + G
Sbjct: 12  MDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAG 63


>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
 pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
          Length = 249

 Score = 32.7 bits (73), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 59  IKMDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPEKVLERVRHRTGKKA 115
           I M CE C   +K  ++ + G+  +  D +Q  ++V   V P  ++  +R+  GK A
Sbjct: 13  IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRN-CGKDA 68


>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
          Length = 71

 Score = 30.4 bits (67), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 52  LQTVEIKIK-MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPEKVLE 105
           L+T ++++  M C  C   +++++E +KGV +  V     +LTV    DP++V E
Sbjct: 2   LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVT--YDPKQVSE 54


>pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant
           Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE
          Length = 414

 Score = 30.0 bits (66), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 85  VDPKQSKLTVIGYVDPEKVLERVRHRTGKKAEFWPYVPSDVVPRPYA 131
           +DP+     V+G+   + V     H TG     WP+ PSD V + YA
Sbjct: 266 IDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPF-PSDKVMQGYA 311


>pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant
          Length = 414

 Score = 29.6 bits (65), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 85  VDPKQSKLTVIGYVDPEKVLERVRHRTGKKAEFWPYVPSDVVPRPYA 131
           +DP+     V+G+   + V     H TG     WP+ PSD V + YA
Sbjct: 266 IDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPF-PSDKVMQGYA 311


>pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
           Inactive Mutant D180a In Complex With Maltoheptaose
 pdb|1RP9|A Chain A, Crystal Structure Of Barley Alpha-amylase Isozyme 1 (amy1)
           Inactive Mutant D180a In Complex With Acarbose
          Length = 405

 Score = 29.6 bits (65), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 85  VDPKQSKLTVIGYVDPEKVLERVRHRTGKKAEFWPYVPSDVVPRPYA 131
           +DP+     V+G+   + V     H TG     WP+ PSD V + YA
Sbjct: 266 IDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPF-PSDKVMQGYA 311


>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
           Protein In Vitro
 pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
           Protein In Living E. Coli Cells
          Length = 66

 Score = 29.6 bits (65), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 61  MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPEKVLERVRHRTGKKAEFW 118
           M C  C   V K+++ + GV +VEV  ++ +  V G  DP+ +++ V    G KAE  
Sbjct: 9   MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEE-GYKAEVL 65


>pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley Alpha-
           Amylase Isozyme 1
 pdb|1P6W|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
           In Complex With The Substrate Analogue, Methyl
           4i,4ii,4iii- Tri-Thiomaltotetraoside (Thio-Dp4)
 pdb|1RPK|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1 (Amy1)
           In Complex With Acarbose
          Length = 405

 Score = 29.6 bits (65), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 85  VDPKQSKLTVIGYVDPEKVLERVRHRTGKKAEFWPYVPSDVVPRPYA 131
           +DP+     V+G+   + V     H TG     WP+ PSD V + YA
Sbjct: 266 IDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPF-PSDKVMQGYA 311


>pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose
          Length = 405

 Score = 29.6 bits (65), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 85  VDPKQSKLTVIGYVDPEKVLERVRHRTGKKAEFWPYVPSDVVPRPYA 131
           +DP+     V+G+   + V     H TG     WP+ PSD V + YA
Sbjct: 266 IDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPF-PSDKVMQGYA 311


>pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose
 pdb|2QPU|B Chain B, Sugar Tongs Mutant S378p In Complex With Acarbose
 pdb|2QPU|C Chain C, Sugar Tongs Mutant S378p In Complex With Acarbose
          Length = 405

 Score = 29.6 bits (65), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 85  VDPKQSKLTVIGYVDPEKVLERVRHRTGKKAEFWPYVPSDVVPRPYA 131
           +DP+     V+G+   + V     H TG     WP+ PSD V + YA
Sbjct: 266 IDPQGKAPGVMGWWPAKAVTFVDNHDTGSTQAMWPF-PSDKVMQGYA 311


>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
 pdb|2AJ1|A Chain A, Solution Structure Of Apocada
          Length = 71

 Score = 29.3 bits (64), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 26/43 (60%)

Query: 61  MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPEKV 103
           + C  C  + +++V+ ++GVT+  V+   SK+TV G    ++V
Sbjct: 12  LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASIQQV 54


>pdb|4DOK|A Chain A, Crystal Structure Of Arabidopsis Thaliana
           Chalcone-Isomerase Like Protein At5g05270 (Atchil)
 pdb|4DOK|B Chain B, Crystal Structure Of Arabidopsis Thaliana
           Chalcone-Isomerase Like Protein At5g05270 (Atchil)
          Length = 208

 Score = 29.3 bits (64), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)

Query: 78  KGVTQVEVDPKQSKLTVIG-YVDPEKV---LERVRHRTGKK 114
           +G+T +E+   Q K T IG Y+DP  V   L+  + +TGK+
Sbjct: 27  QGITDIEIHFLQVKFTAIGVYLDPSDVKTHLDNWKGKTGKE 67


>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
 pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
 pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
 pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
          Length = 63

 Score = 29.3 bits (64), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 54  TVEIKI-KMDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPEKV 103
           T+++ +  MDC  C   V K+V+       V+VD    K+T+   +  E++
Sbjct: 1   TIQLTVPTMDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQL 51


>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
           P- Type Atpase Copa From Bacillus Subtilis
          Length = 151

 Score = 28.5 bits (62), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 61  MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDP---------EKVLERVRHRT 111
           M C  C  R++K ++ M GVT   V+     + VI   DP         EK+ +   H  
Sbjct: 15  MTCAACAARIEKGLKRMPGVTDANVNLATETVNVI--YDPAETGTAAIQEKIEKLGYHVV 72

Query: 112 GKKAEF 117
            +KAEF
Sbjct: 73  TEKAEF 78


>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
           Metallidurans Ch34
 pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
           Metallidurans Ch34
          Length = 72

 Score = 28.1 bits (61), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 53  QTVEIKI-KMDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPEKVLERVRHRT 111
           QTV + +  M C  C   VKK++  ++GV++V+V   +++  V+ + D +  ++++   T
Sbjct: 3   QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDV-TFETRQAVVTFDDAKTSVQKLTKAT 61

Query: 112 G 112
            
Sbjct: 62  A 62


>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
           Bacillus Subtilis Copa
          Length = 147

 Score = 27.7 bits (60), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 61  MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDP---------EKVLERVRHRT 111
           M C  C  R++K ++ M GVT   V+       VI   DP         EK+ +   H  
Sbjct: 15  MTCAACAARIEKGLKRMPGVTDANVNLATETSNVI--YDPAETGTAAIQEKIEKLGYHVV 72

Query: 112 GKKAEF 117
            +KAEF
Sbjct: 73  TEKAEF 78


>pdb|1OPZ|A Chain A, A Core Mutation Affecting The Folding Properties Of A
          Soluble Domain Of The Atpase Protein Copa From Bacillus
          Subtilis
 pdb|1OQ3|A Chain A, A Core Mutation Affecting The Folding Properties Of A
          Soluble Domain Of The Atpase Protein Copa From Bacillus
          Subtilis
 pdb|1OQ6|A Chain A, Solution Structure Of Copper-s46v Copa From Bacillus
          Subtilis
          Length = 76

 Score = 26.9 bits (58), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 61 MDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVI 95
          M C  C  R++K ++ M GVT   V+     + VI
Sbjct: 15 MTCAACAARIEKGLKRMPGVTDANVNLATETVNVI 49


>pdb|1CI9|A Chain A, Dfp-Inhibited Esterase Estb From Burkholderia Gladioli
 pdb|1CI9|B Chain B, Dfp-Inhibited Esterase Estb From Burkholderia Gladioli
 pdb|1CI8|A Chain A, Esterase Estb From Burkholderia Gladioli: An Esterase With
           (Beta)-Lactamase Fold.
 pdb|1CI8|B Chain B, Esterase Estb From Burkholderia Gladioli: An Esterase With
           (Beta)-Lactamase Fold
          Length = 392

 Score = 26.9 bits (58), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 99  DPEKVLERVRHRTGKKAEFWPYVPSDVVPRPYAPEAYDKKAPP---GYVRNVLDDPVAA 154
           D  + LE +R   G    F P   +D   R  A    + + P    GY+  VLDDP AA
Sbjct: 283 DVLRALEAIRANPG----FLPETLADAARRDQAGVGAETRGPGWGFGYLSAVLDDPAAA 337


>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
           Metallochaperone, Scatx1
 pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
           Form)
 pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
           Form)
 pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
           Form)
 pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
           Form)
 pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
           Trafficking Sites:atx1 Side-To-Side (Aerobic)
 pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
           Trafficking Sites:atx1 Side-To-Side (Aerobic)
 pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
           Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
 pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
           Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
          Length = 64

 Score = 26.6 bits (57), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 54  TVEIKI-KMDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPEKV 103
           T+++ +  + CE C   V K+V+       V+VD    K+T+   +  E++
Sbjct: 2   TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQL 52


>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
 pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
 pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
 pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
          Length = 63

 Score = 26.6 bits (57), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 54  TVEIKI-KMDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPEKV 103
           T+++ +  + CE C   V K+V+       V+VD    K+T+   +  E++
Sbjct: 1   TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQL 51


>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
           Trimeric Form, His61tyr Mutant)
 pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
           Trimeric Form, His61tyr Mutant)
 pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
           Trimeric Form, His61tyr Mutant)
 pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
           Trimeric Form, His61tyr Mutant)
 pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
           Trimeric Form, His61tyr Mutant)
 pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
           Trimeric Form, His61tyr Mutant)
 pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
           Trafficking Sites: H61y Atx1 Side-To-Side
 pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
           Trafficking Sites: H61y Atx1 Side-To-Side
          Length = 64

 Score = 26.6 bits (57), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 54  TVEIKI-KMDCEGCERRVKKSVEGMKGVTQVEVDPKQSKLTVIGYVDPEKV 103
           T+++ +  + CE C   V K+V+       V+VD    K+T+   +  E++
Sbjct: 2   TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQL 52


>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
 pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
          Length = 1263

 Score = 26.2 bits (56), Expect = 9.8,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 33  LCDFESRWHSHRKLKKRKQLQTVEIKIKMDCEGCERRVKKSVEGMK 78
           L DF +RW  + K  + KQ + +      D E  +  +  SVE ++
Sbjct: 337 LRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR 382


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,360,383
Number of Sequences: 62578
Number of extensions: 206661
Number of successful extensions: 540
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 32
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)