Query 045613
Match_columns 190
No_of_seqs 116 out of 321
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 03:45:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 5.8E-65 1.3E-69 407.5 19.2 152 27-187 1-154 (154)
2 PF02018 CBM_4_9: Carbohydrate 84.5 13 0.00028 26.9 9.9 66 91-166 59-125 (131)
3 KOG1702 Nebulin repeat protein 45.2 14 0.00031 31.7 1.8 40 91-145 205-244 (264)
4 PF09263 PEX-2N: Peroxisome bi 33.6 31 0.00067 25.4 1.8 34 22-55 6-53 (87)
5 PF06510 DUF1102: Protein of u 25.0 3.7E+02 0.008 21.7 9.6 37 91-130 46-85 (146)
6 KOG3437 Anaphase-promoting com 18.1 5.8E+02 0.013 21.3 7.3 45 99-152 77-125 (184)
7 PF15513 DUF4651: Domain of un 17.0 85 0.0018 21.7 1.4 31 150-180 13-43 (62)
8 COG4549 Uncharacterized protei 17.0 5.3E+02 0.012 21.4 6.2 67 92-168 34-102 (178)
9 KOG1496 Malate dehydrogenase [ 15.4 1.3E+02 0.0028 26.9 2.4 43 139-184 254-304 (332)
10 PF00659 POLO_box: POLO box du 14.4 3.8E+02 0.0082 17.7 4.2 30 5-34 7-40 (68)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=5.8e-65 Score=407.48 Aligned_cols=152 Identities=41% Similarity=0.851 Sum_probs=142.1
Q ss_pred CCeEE-EecccceEEeCCCCCceeeeecCcchhhhccccccceEEeeeeEEEEEEEcccceeecccCCceEEEEEEEEee
Q 045613 27 SGLIK-IPVRALNIIWGNDPRYWQWIKLTEENTKLLAGFEEGSMLLQVNWIEVTGKLPIISSMAALTPKAYEIFYIVKFR 105 (190)
Q Consensus 27 g~~cy-LsaR~L~I~Wg~~~~YW~W~~~~~s~~~~~~rf~EvAeL~~VcWLeI~G~i~~~~~~l~sp~t~Y~a~~v~kl~ 105 (190)
||+|| ||||+|+|+||+|||||+|+++|+| ||.|||||++||||||+|+|+ +++| ||+|+|+|||+||++
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~s------rf~evAeL~~V~WLeI~G~i~--~~~L-sp~t~Y~vy~v~kl~ 71 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDS------RFSEVAELLQVCWLEIRGKIN--TRML-SPGTTYAVYFVFKLK 71 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcc------cceeeeEEEEEEEEEEEEEEE--ceEc-CCCCEEEEEEEEEec
Confidence 89999 9999999999999999999999999 999999999999999999999 9999 899999999999999
Q ss_pred eccCCceeeCeEEEEEECCceE-EEeeeeccccccCCCeEEEEcceeEeCCCCccEEEEEEEEEeCCeeeceEEEEEEEE
Q 045613 106 VDAFGWHSVPVKFKVRVNGEEK-VKSVMLQLYREKQEEWQEIPGGDFAVPRDTVGTVEFGMFEIESDWWKGGMVLAGIVI 184 (190)
Q Consensus 106 ~~a~Gw~~~pv~~~~~~~~g~~-v~~~~~~~~~~~~dgW~EielGeF~~~~~~d~ev~fsl~E~~~~~wK~GLiv~GieI 184 (190)
+++|||+..||+++++++++.. .....+..++.|+|||||||+|||+++++++++|+|+|+|+++++||+||||+||||
T Consensus 72 ~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~GieI 151 (154)
T PF14299_consen 72 DDAYGWDSPPVEFSVKVPDGEKYEQERKVCLPKERGDGWMEIELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIEI 151 (154)
T ss_pred CCCCCCCcCCEEEEEEeCCCccccceeeEEcCCCCCCCEEEEEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEEE
Confidence 9999998889999999998875 222344455678899999999999999889999999999999999999999999999
Q ss_pred Eee
Q 045613 185 KPK 187 (190)
Q Consensus 185 RPk 187 (190)
|||
T Consensus 152 RPK 154 (154)
T PF14299_consen 152 RPK 154 (154)
T ss_pred ecC
Confidence 998
No 2
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=84.50 E-value=13 Score=26.91 Aligned_cols=66 Identities=20% Similarity=0.189 Sum_probs=43.5
Q ss_pred cCCceEEEEEEEEeeeccCCceeeCeEEEEEECCc-eEEEeeeeccccccCCCeEEEEcceeEeCCCCccEEEEEEE
Q 045613 91 LTPKAYEIFYIVKFRVDAFGWHSVPVKFKVRVNGE-EKVKSVMLQLYREKQEEWQEIPGGDFAVPRDTVGTVEFGMF 166 (190)
Q Consensus 91 sp~t~Y~a~~v~kl~~~a~Gw~~~pv~~~~~~~~g-~~v~~~~~~~~~~~~dgW~EielGeF~~~~~~d~ev~fsl~ 166 (190)
.||.+|.+.|-++.... .++.+.+...++ .....-.. .....+.|.++++ +|... .+...+.|.+.
T Consensus 59 ~~G~~Y~~s~~vk~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~W~~~s~-~ft~~-~~~~~~~l~~~ 125 (131)
T PF02018_consen 59 KPGKTYTVSFWVKADSG------GTVSVSLRDEDGSPYNWYTGQ--TVTITGEWTKYSG-TFTAP-SDDDTVRLYFE 125 (131)
T ss_dssp -TTSEEEEEEEEEESSS------EEEEEEEEESSTTTEEEEEEE--EEEETSSEEEEEE-EEEEE-SSCEEEEEEEE
T ss_pred cCCCEEEEEEEEEeCCC------CEEEEEEEEcCCCCcEEEEEE--EEECCCCcEEEEE-EEEEC-CCCceEEEEEE
Confidence 39999999999999653 577777777766 22111100 1123599999995 89988 55566666554
No 3
>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]
Probab=45.19 E-value=14 Score=31.69 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=26.6
Q ss_pred cCCceEEEEEEEEeeeccCCceeeCeEEEEEECCceEEEeeeeccccccCCCeEE
Q 045613 91 LTPKAYEIFYIVKFRVDAFGWHSVPVKFKVRVNGEEKVKSVMLQLYREKQEEWQE 145 (190)
Q Consensus 91 sp~t~Y~a~~v~kl~~~a~Gw~~~pv~~~~~~~~g~~v~~~~~~~~~~~~dgW~E 145 (190)
.||.+|.|++.|.-.|. -.|++.||..|.+. ...+||||=
T Consensus 205 ~~gktyra~ydysaqde----------devsF~dgd~ivnv-----q~iddGWmy 244 (264)
T KOG1702|consen 205 CTGKTYRAFYDYSAQDE----------DEVSFVDGDYIVNV-----QSIDDGWMY 244 (264)
T ss_pred CCCccchhhccCcccCc----------ceeEEecCCeEEEE-----EeccCCcee
Confidence 48999999988876542 23566777775442 224699984
No 4
>PF09263 PEX-2N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015343 This domain adopts a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; PDB: 1WLF_A.
Probab=33.59 E-value=31 Score=25.39 Aligned_cols=34 Identities=18% Similarity=0.511 Sum_probs=19.1
Q ss_pred eeccCCCeEE--Eec-----------ccceEEeCCC-CCceeeeecCc
Q 045613 22 KDQDSSGLIK--IPV-----------RALNIIWGND-PRYWQWIKLTE 55 (190)
Q Consensus 22 ldk~sg~~cy--Lsa-----------R~L~I~Wg~~-~~YW~W~~~~~ 55 (190)
+.=++.|+|| |++ -++..+||+. |-|-.|+..-.
T Consensus 6 v~f~n~kdCFL~Lp~~l~~~L~L~q~qAvEvsWg~~~pvfLSW~e~r~ 53 (87)
T PF09263_consen 6 VVFNNAKDCFLHLPSRLASQLHLQQNQAVEVSWGHQSPVFLSWVEGRS 53 (87)
T ss_dssp EEEE--SSS-EEE-HHHHHHTT--TT--EEEESSS---EEE-EEE-SS
T ss_pred EEecCCcceEEECCHHHHHHHHHhhCceEEEEeCCCCcEEEEeecccc
Confidence 4556789999 765 3568899998 88999998553
No 5
>PF06510 DUF1102: Protein of unknown function (DUF1102); InterPro: IPR009482 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=25.01 E-value=3.7e+02 Score=21.67 Aligned_cols=37 Identities=11% Similarity=0.279 Sum_probs=27.4
Q ss_pred cCCceEEEEEEEEeeeccCCcee---eCeEEEEEECCceEEEe
Q 045613 91 LTPKAYEIFYIVKFRVDAFGWHS---VPVKFKVRVNGEEKVKS 130 (190)
Q Consensus 91 sp~t~Y~a~~v~kl~~~a~Gw~~---~pv~~~~~~~~g~~v~~ 130 (190)
||++.|.-=-||.+.. ..|++ .|+-+.++ .+...|+.
T Consensus 46 Sp~S~Y~Fd~VF~VsN--~lwEn~~~~~IcV~I~-s~~~~i~f 85 (146)
T PF06510_consen 46 SPNSTYVFDEVFEVSN--HLWENGADVPICVTIS-SSSDSIEF 85 (146)
T ss_pred CCCceEeeeeEEEeec--ccccccCCceEEEEEe-cCCCcEEE
Confidence 7999999999999965 58987 77777777 33344444
No 6
>KOG3437 consensus Anaphase-promoting complex (APC), subunit 10 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=18.11 E-value=5.8e+02 Score=21.32 Aligned_cols=45 Identities=29% Similarity=0.441 Sum_probs=29.6
Q ss_pred EEEEEeeeccCCceeeCeEEEEEECCceE----EEeeeeccccccCCCeEEEEcceeE
Q 045613 99 FYIVKFRVDAFGWHSVPVKFKVRVNGEEK----VKSVMLQLYREKQEEWQEIPGGDFA 152 (190)
Q Consensus 99 ~~v~kl~~~a~Gw~~~pv~~~~~~~~g~~----v~~~~~~~~~~~~dgW~EielGeF~ 152 (190)
|+-|+. |.+| .|-++++..++|-. +....+ .+| .||+.+.+..+.
T Consensus 77 f~~f~~-DeSY----tPs~i~I~~G~g~~dl~~~~~~el---~ep-~GWv~lp~~d~~ 125 (184)
T KOG3437|consen 77 FLDFKQ-DESY----TPSKIKIRAGNGFNDLWEIQSVEL---VEP-KGWVHLPVLDND 125 (184)
T ss_pred EEEEec-cccc----CceeEEEEecCChhheeeeeEEEE---ecC-CceEEEeeccCC
Confidence 445555 5553 79999999888764 222222 233 899999999863
No 7
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=17.00 E-value=85 Score=21.71 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=25.3
Q ss_pred eeEeCCCCccEEEEEEEEEeCCeeeceEEEE
Q 045613 150 DFAVPRDTVGTVEFGMFEIESDWWKGGMVLA 180 (190)
Q Consensus 150 eF~~~~~~d~ev~fsl~E~~~~~wK~GLiv~ 180 (190)
+||.+-|+-..+++..++-+...-.+||+++
T Consensus 13 ~~fs~lG~I~vLYvn~~eS~~~~~~GGvV~e 43 (62)
T PF15513_consen 13 QFFSQLGEIAVLYVNPYESDEDRLTGGVVME 43 (62)
T ss_pred HHHHhcCcEEEEEEcccccCCCeEeccEEEe
Confidence 5676667778899999998777889999886
No 8
>COG4549 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=16.96 E-value=5.3e+02 Score=21.37 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=35.8
Q ss_pred CCceEEEEEEEEeeeccCCceeeCeEEEEEECCceEEEeeeeccccccCCCe-EEEEcceeEeCC-CCccEEEEEEEEE
Q 045613 92 TPKAYEIFYIVKFRVDAFGWHSVPVKFKVRVNGEEKVKSVMLQLYREKQEEW-QEIPGGDFAVPR-DTVGTVEFGMFEI 168 (190)
Q Consensus 92 p~t~Y~a~~v~kl~~~a~Gw~~~pv~~~~~~~~g~~v~~~~~~~~~~~~dgW-~EielGeF~~~~-~~d~ev~fsl~E~ 168 (190)
.++.|.+.|++--. .-| ...-++.|++|.|-. .+ .| +|.-|| +|+.-|+|...= .....|+=+..|+
T Consensus 34 ~gs~~~atlrVPhg--cdg--kaTtkV~vklPeGvi--~~---kp-~PkpGW~le~~Kg~y~~ty~~hG~~i~~G~~ev 102 (178)
T COG4549 34 AGSTYKATLRVPHG--CDG--KATTKVRVKLPEGVI--FA---KP-QPKPGWTLETIKGDYEKTYQNHGSGITSGVKEV 102 (178)
T ss_pred CCceEEEEEecCCC--CCC--CcceEEEEeCCCcee--ee---cc-cCCCCcEEEEeecceeeeeeccCCccccceeEE
Confidence 57888877665432 111 144556677776642 11 12 355788 567778876531 2233454455554
No 9
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=15.41 E-value=1.3e+02 Score=26.86 Aligned_cols=43 Identities=23% Similarity=0.494 Sum_probs=30.3
Q ss_pred cCCCeEEEEcceeEeC-----C--CCccEEEEEE-EEEeCCeeeceEEEEEEEE
Q 045613 139 KQEEWQEIPGGDFAVP-----R--DTVGTVEFGM-FEIESDWWKGGMVLAGIVI 184 (190)
Q Consensus 139 ~~dgW~EielGeF~~~-----~--~~d~ev~fsl-~E~~~~~wK~GLiv~GieI 184 (190)
.+|=|+.-.-|+|+.- + +-..-+.||+ ..+++|.|| ||+|.+|
T Consensus 254 i~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~k~g~wk---iVqgl~i 304 (332)
T KOG1496|consen 254 IRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTIKNGDWK---IVQGLPI 304 (332)
T ss_pred hhheecCCCCccEEEEeeecCCCCCCCCCeEEEcceEecCCceE---EEcCcch
Confidence 3478888888888752 2 2233466777 556789998 7888776
No 10
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=14.39 E-value=3.8e+02 Score=17.74 Aligned_cols=30 Identities=17% Similarity=-0.025 Sum_probs=20.8
Q ss_pred ceeeccC---ceEeCCCcee-eeccCCCeEEEec
Q 045613 5 NSRSYSN---PHWKADGSLV-KDQDSSGLIKIPV 34 (190)
Q Consensus 5 ~~~~L~~---p~ll~~g~k~-ldk~sg~~cyLsa 34 (190)
+-++||+ .|.+.|++|. |...+....|+..
T Consensus 7 i~~~LSng~vqv~FnD~tkivl~~~~~~v~yi~~ 40 (68)
T PF00659_consen 7 IGYQLSNGTVQVNFNDHTKIVLSPDGRLVTYIDR 40 (68)
T ss_dssp EEEEETTSEEEEEETTS-EEEEETTCCEEEEE-T
T ss_pred EEEEEeCCCEEEEEeCCCEEEECCCCCEEEEECC
Confidence 4578897 5889999998 7766666666654
Done!