Query 045613
Match_columns 190
No_of_seqs 116 out of 321
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dyo_A Endo-1,4-beta-xylanase 90.1 5.1 0.00017 30.6 11.7 91 91-189 66-158 (160)
2 2w5f_A Endo-1,4-beta-xylanase 57.9 1.1E+02 0.0037 27.7 11.7 85 91-187 81-169 (540)
3 3tes_A Tencon; fibronectin typ 29.6 66 0.0023 21.4 4.1 31 91-125 63-93 (98)
4 3qht_C Monobody YSMB-1; fibron 28.7 72 0.0024 21.0 4.1 30 91-120 66-95 (97)
5 3b83_A Ten-D3; beta sheet, com 24.0 89 0.0031 20.7 3.9 31 91-125 63-93 (100)
6 2h41_A Fibronectin; beta sandw 21.5 1.4E+02 0.0048 20.4 4.6 42 76-122 52-94 (95)
7 1oww_A FN, fibronectin first t 20.6 1.5E+02 0.0051 21.3 4.5 21 92-115 70-90 (98)
8 2lde_A Sarafotoxin-I3; endothe 18.6 20 0.00069 19.8 -0.4 11 36-46 16-26 (26)
9 1x5a_A Ephrin type-A receptor 17.6 1.4E+02 0.0049 20.0 3.9 27 91-118 70-96 (107)
10 3k2m_C Monobody HA4; engineere 16.6 2E+02 0.0068 18.9 4.4 31 91-121 68-99 (101)
No 1
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=90.13 E-value=5.1 Score=30.56 Aligned_cols=91 Identities=10% Similarity=0.143 Sum_probs=54.7
Q ss_pred cCCceEEEEEEEEeeeccCCceeeCeEEEEEE--CCceEEEeeeeccccccCCCeEEEEcceeEeCCCCccEEEEEEEEE
Q 045613 91 LTPKAYEIFYIVKFRVDAFGWHSVPVKFKVRV--NGEEKVKSVMLQLYREKQEEWQEIPGGDFAVPRDTVGTVEFGMFEI 168 (190)
Q Consensus 91 sp~t~Y~a~~v~kl~~~a~Gw~~~pv~~~~~~--~~g~~v~~~~~~~~~~~~dgW~EielGeF~~~~~~d~ev~fsl~E~ 168 (190)
.||++|.+..-+++.+.. ....+.+++.. .+|+.. ...+.......++|.+++-|.|..+... ..+ .|| +
T Consensus 66 ~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~~~-y~~i~~~~~~~~~W~~L~G~~ft~~~~~-~~~--~ly-v 137 (160)
T 1dyo_A 66 VPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGTQR-YDTIDMKTVGPNQWVHLYNPQYRIPSDA-TDM--YVY-V 137 (160)
T ss_dssp CTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSCEE-EEEEEEEEECSSCCEEEEEEEEECCTTC-EEE--EEE-E
T ss_pred cCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCCEE-EEEEeeEEEcCCccEEEECcEEEeCCCC-CEE--EEE-E
Confidence 499999999999986643 12345555554 355531 0111111224689999998899986542 233 333 1
Q ss_pred eCCeeeceEEEEEEEEEeeec
Q 045613 169 ESDWWKGGMVLAGIVIKPKLV 189 (190)
Q Consensus 169 ~~~~wK~GLiv~GieIRPk~~ 189 (190)
++..-..=+.|+.+.|.|.-+
T Consensus 138 e~~~~~~d~yiDdv~i~~~g~ 158 (160)
T 1dyo_A 138 ETADDTINFYIDEAIGAVAGT 158 (160)
T ss_dssp EESSCCCCEEEEEEEEEETTC
T ss_pred ECCCCCccEEEEEEEEEeCcc
Confidence 233335558899999988643
No 2
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=57.94 E-value=1.1e+02 Score=27.71 Aligned_cols=85 Identities=16% Similarity=0.251 Sum_probs=49.9
Q ss_pred cCCceEEEEEEEEeeeccCCceeeCeEEEEEEC----CceEEEeeeeccccccCCCeEEEEcceeEeCCCCccEEEEEEE
Q 045613 91 LTPKAYEIFYIVKFRVDAFGWHSVPVKFKVRVN----GEEKVKSVMLQLYREKQEEWQEIPGGDFAVPRDTVGTVEFGMF 166 (190)
Q Consensus 91 sp~t~Y~a~~v~kl~~~a~Gw~~~pv~~~~~~~----~g~~v~~~~~~~~~~~~dgW~EielGeF~~~~~~d~ev~fsl~ 166 (190)
.||++|...+-+|. +.. ...++.+++... ++..... +.....+.++|.+++ |.|..+.+ ...+++-+
T Consensus 81 ~~G~~Y~fSawVk~-~g~---~~~~v~l~l~~~d~~~~~~~~~~--i~~~~~~~g~Wt~L~-g~ft~p~~-~~~~~lyv- 151 (540)
T 2w5f_A 81 DGGVEYKYSVFVKH-NGT---GTETFKLSVSYLDSETEEENKEV--IATKDVVAGEWTEIS-AKYKAPKT-AVNITLSI- 151 (540)
T ss_dssp CTTCEEEEEEEEEC-CSS---SEEEEEEEEEEEETTTCCEEEEE--EEEEEEETTCCEEEE-EEEECCTT-EEEEEEEE-
T ss_pred cCCCEEEEEEEEEe-CCC---CCceEEEEEEEecCCCCCceEEE--eeEEEEeCCeeEEEE-eEEEecCC-CeEEEEEE-
Confidence 49999999999995 221 245666666542 2222211 111122469999999 79987643 23444433
Q ss_pred EEeCCeeeceEEEEEEEEEee
Q 045613 167 EIESDWWKGGMVLAGIVIKPK 187 (190)
Q Consensus 167 E~~~~~wK~GLiv~GieIRPk 187 (190)
|.. -..-+.|+.+.|.++
T Consensus 152 e~~---~~~~f~vDdvsl~~~ 169 (540)
T 2w5f_A 152 TTD---STVDFIFDDVTITRK 169 (540)
T ss_dssp EES---SCCCEEEEEEEEEEC
T ss_pred EcC---CCCCEEEEEEEEecC
Confidence 222 245688888887654
No 3
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=29.58 E-value=66 Score=21.44 Aligned_cols=31 Identities=13% Similarity=0.016 Sum_probs=21.7
Q ss_pred cCCceEEEEEEEEeeeccCCceeeCeEEEEEECCc
Q 045613 91 LTPKAYEIFYIVKFRVDAFGWHSVPVKFKVRVNGE 125 (190)
Q Consensus 91 sp~t~Y~a~~v~kl~~~a~Gw~~~pv~~~~~~~~g 125 (190)
.|+|.|.+.+.-.-. .|- ..|+..++..++.
T Consensus 63 ~P~t~Y~~~V~A~~~---~g~-S~p~~~~~~~~~~ 93 (98)
T 3tes_A 63 KPGTEYTVSIYGVKG---GHR-SNPLSAEFTTGGH 93 (98)
T ss_dssp CTTCEEEEEEEEEET---TEE-BCCEEEEEECSSC
T ss_pred CCCCEEEEEEEEEeC---Ccc-cCCEEEEEEcCcc
Confidence 499999976655442 344 6898888877653
No 4
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=28.66 E-value=72 Score=20.98 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=18.4
Q ss_pred cCCceEEEEEEEEeeeccCCceeeCeEEEE
Q 045613 91 LTPKAYEIFYIVKFRVDAFGWHSVPVKFKV 120 (190)
Q Consensus 91 sp~t~Y~a~~v~kl~~~a~Gw~~~pv~~~~ 120 (190)
.|+|.|.+.+.-.-.....-....|+.++.
T Consensus 66 ~p~t~Y~v~V~A~~~~G~gp~ss~p~~~~~ 95 (97)
T 3qht_C 66 SPGVDYTITVYAYYSYYDLYYSYSPSSINY 95 (97)
T ss_dssp CTTCEEEEEEEEEEEETTEEEECSCEEEEE
T ss_pred CCCCEEEEEEEEEeCCccCCCCCCCEEEee
Confidence 499999887766554332113346776654
No 5
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=23.99 E-value=89 Score=20.66 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=21.7
Q ss_pred cCCceEEEEEEEEeeeccCCceeeCeEEEEEECCc
Q 045613 91 LTPKAYEIFYIVKFRVDAFGWHSVPVKFKVRVNGE 125 (190)
Q Consensus 91 sp~t~Y~a~~v~kl~~~a~Gw~~~pv~~~~~~~~g 125 (190)
.|+|.|.+.+.-.- ..|. ..|+..+..++-+
T Consensus 63 ~p~t~Y~~~V~A~n---~~g~-s~p~~~~~~~~~~ 93 (100)
T 3b83_A 63 EPNTTYEIRIVARN---GQQY-SPPVSTTFTTGSL 93 (100)
T ss_dssp CTTCEEEEEEEEEE---TTEE-CCCEEEEEECCCC
T ss_pred CCCCEEEEEEEEEe---CCCC-CCCEEEEEEEEee
Confidence 49999997665543 3377 6888888777644
No 6
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A
Probab=21.51 E-value=1.4e+02 Score=20.39 Aligned_cols=42 Identities=5% Similarity=-0.041 Sum_probs=23.2
Q ss_pred EEEEEEcccc-eeecccCCceEEEEEEEEeeeccCCceeeCeEEEEEE
Q 045613 76 IEVTGKLPII-SSMAALTPKAYEIFYIVKFRVDAFGWHSVPVKFKVRV 122 (190)
Q Consensus 76 LeI~G~i~~~-~~~l~sp~t~Y~a~~v~kl~~~a~Gw~~~pv~~~~~~ 122 (190)
+.+.|.-..+ -.-| .|+|.|.+.+.-.- . |=++.|+......
T Consensus 52 ~~v~g~~~s~~l~~L-~PgT~Y~V~v~a~~-~---~~~S~p~s~~~~T 94 (95)
T 2h41_A 52 LDLPSTATSVNIPDL-LPGRKYIVNVYQIS-E---DGEQSLILSTSQT 94 (95)
T ss_dssp EEEETTCCEEEECSC-CTTCEEEEEEEEEE-T---TSCEEEEEEEEEE
T ss_pred EECCCCccEEEECCC-CCCCEEEEEEEEEc-C---CCcccCEEEEEEC
Confidence 4566643300 1224 59999998765433 2 2226777766543
No 7
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=20.61 E-value=1.5e+02 Score=21.28 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=16.1
Q ss_pred CCceEEEEEEEEeeeccCCceeeC
Q 045613 92 TPKAYEIFYIVKFRVDAFGWHSVP 115 (190)
Q Consensus 92 p~t~Y~a~~v~kl~~~a~Gw~~~p 115 (190)
|+.+|++-+.-+. .|||++..
T Consensus 70 P~~~YE~qv~S~~---ryG~~Evs 90 (98)
T 1oww_A 70 PGVVYEGQLISIQ---QYGHQEVT 90 (98)
T ss_dssp SSEEEEEEEEEEE---SSSCEEEE
T ss_pred CCcEEEEEEEEee---ccCcccce
Confidence 9999998776555 48997654
No 8
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=18.57 E-value=20 Score=19.76 Aligned_cols=11 Identities=27% Similarity=0.595 Sum_probs=8.2
Q ss_pred cceEEeCCCCC
Q 045613 36 ALNIIWGNDPR 46 (190)
Q Consensus 36 ~L~I~Wg~~~~ 46 (190)
.|.|+|.++|+
T Consensus 16 hlDiIWvntp~ 26 (26)
T 2lde_A 16 HKDVIWVNRNX 26 (26)
T ss_dssp STTCSTTTCC-
T ss_pred cccEEEecCCC
Confidence 57889988874
No 9
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Probab=17.58 E-value=1.4e+02 Score=19.96 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=16.4
Q ss_pred cCCceEEEEEEEEeeeccCCceeeCeEE
Q 045613 91 LTPKAYEIFYIVKFRVDAFGWHSVPVKF 118 (190)
Q Consensus 91 sp~t~Y~a~~v~kl~~~a~Gw~~~pv~~ 118 (190)
.|+|.|.+.+.-.-..+.--| ..++.+
T Consensus 70 ~p~t~Y~f~V~A~~~~G~g~~-S~~~~~ 96 (107)
T 1x5a_A 70 QPDTTYIVRVRTLTPLGPGPF-SPDHEF 96 (107)
T ss_dssp CSSCEEEEEEEEECSSSCCCC-CCCEEE
T ss_pred CCCCEEEEEEEEECCCccCCC-CCCEEE
Confidence 599999977766654333224 455544
No 10
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A
Probab=16.61 E-value=2e+02 Score=18.91 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=18.7
Q ss_pred cCCceEEEEEEEEeeecc-CCceeeCeEEEEE
Q 045613 91 LTPKAYEIFYIVKFRVDA-FGWHSVPVKFKVR 121 (190)
Q Consensus 91 sp~t~Y~a~~v~kl~~~a-~Gw~~~pv~~~~~ 121 (190)
.|+|.|.+.+.-.-.... |--+..|+..+.+
T Consensus 68 ~p~t~Y~~~V~A~~~~~~~~~~~s~p~~~~~~ 99 (101)
T 3k2m_C 68 SPGVDYTITVYAWGEDSAGYMFMYSPISINYR 99 (101)
T ss_dssp CTTCEEEEEEEEEEECTTSCEEECBCEEEEEE
T ss_pred CCCCEEEEEEEEEeCCccceeecCCCEEEEee
Confidence 499999987766554322 1112467776654
Done!