Query 045614
Match_columns 123
No_of_seqs 39 out of 41
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 03:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1962 B-cell receptor-associ 100.0 1.4E-30 3E-35 208.1 12.1 120 1-120 1-129 (216)
2 PF05529 Bap31: B-cell recepto 99.9 1E-21 2.2E-26 147.1 12.1 121 2-122 5-135 (192)
3 COG5374 Uncharacterized conser 96.1 0.2 4.3E-06 40.8 12.0 116 2-118 5-131 (192)
4 PF00404 Dockerin_1: Dockerin 79.8 1.3 2.9E-05 24.4 1.5 18 72-89 4-21 (21)
5 COG2715 SpmA Uncharacterized m 62.8 23 0.00049 29.4 5.5 61 51-120 134-198 (206)
6 COG3851 UhpB Signal transducti 47.7 92 0.002 28.7 7.3 52 55-112 228-279 (497)
7 COG5000 NtrY Signal transducti 44.5 81 0.0018 30.4 6.7 94 2-96 275-379 (712)
8 COG3965 Predicted Co/Zn/Cd cat 43.2 73 0.0016 27.9 5.8 82 30-111 109-193 (314)
9 COG3030 FxsA Protein affecting 41.0 1.3E+02 0.0029 23.6 6.4 55 48-103 29-104 (158)
10 COG5416 Uncharacterized integr 37.6 90 0.002 23.2 4.8 33 88-120 65-97 (98)
11 PF14217 DUF4327: Domain of un 34.1 19 0.00042 25.0 0.8 23 61-83 2-27 (68)
12 cd08048 TAF11 TATA Binding Pro 32.1 1.8E+02 0.0039 20.3 5.5 61 22-92 19-81 (85)
13 PF01702 TGT: Queuine tRNA-rib 31.6 95 0.0021 24.1 4.3 35 85-122 190-225 (238)
14 TIGR00164 PS_decarb_rel phosph 30.1 45 0.00097 25.6 2.3 28 1-28 3-30 (189)
15 PRK01008 queuine tRNA-ribosylt 29.0 86 0.0019 27.3 4.0 35 86-123 334-369 (372)
16 KOG1638 Steroid reductase [Lip 28.6 65 0.0014 27.5 3.2 27 92-120 149-176 (257)
17 PF14880 COX14: Cytochrome oxi 28.4 1.7E+02 0.0037 18.9 4.7 27 90-116 18-48 (59)
18 PF11598 COMP: Cartilage oligo 28.3 1.7E+02 0.0036 18.8 5.2 33 91-123 8-40 (45)
19 PF05024 Gpi1: N-acetylglucosa 25.6 61 0.0013 25.3 2.3 30 76-106 88-117 (189)
20 PF10160 Tmemb_40: Predicted m 24.4 1.3E+02 0.0028 25.6 4.1 68 32-101 34-106 (261)
21 PF07301 DUF1453: Protein of u 24.1 1.9E+02 0.0042 22.5 4.8 56 34-104 20-75 (148)
22 PLN02392 probable steroid redu 22.4 3.2E+02 0.0069 22.9 6.1 63 51-119 113-178 (260)
23 PF06305 DUF1049: Protein of u 22.2 2.1E+02 0.0045 17.8 4.7 33 88-121 24-57 (68)
24 TIGR00817 tpt Tpt phosphate/ph 22.2 67 0.0015 25.0 2.0 35 36-71 267-301 (302)
25 PTZ00233 variable surface prot 22.0 59 0.0013 29.8 1.9 17 14-30 445-462 (509)
26 PRK13260 2,3-diketo-L-gulonate 21.3 78 0.0017 26.9 2.3 39 75-116 20-58 (332)
27 PRK13713 conjugal transfer pro 21.0 1.8E+02 0.0039 22.2 4.0 24 65-92 44-67 (118)
28 PF02615 Ldh_2: Malate/L-lacta 20.4 77 0.0017 26.9 2.1 38 76-116 21-58 (335)
29 PF01313 Bac_export_3: Bacteri 20.2 1.3E+02 0.0029 20.8 2.9 53 49-113 24-76 (76)
No 1
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=99.97 E-value=1.4e-30 Score=208.06 Aligned_cols=120 Identities=37% Similarity=0.540 Sum_probs=116.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhhhhccCCCceeeeehhhHHHHHHHHHHHHHHHHHhhhccCC-CCCch
Q 045614 1 MIYLLFKIVFTEMALILTLLFRNPLRKFVIMGLDRLKRGRGPLVAKSVGATVLVVLCSAVYSAMEIQRRAREGG-AINPT 79 (123)
Q Consensus 1 MiqLLF~v~f~E~a~il~LlfktPlRkLvi~~lD~~KrGrGP~~vKTva~TvlVvl~Ss~ySi~kIq~R~~~~g-~~npt 79 (123)
|+|++|+++++|++++++|+++.|.|+...+..|++|.|+||.+.||+++|++|++.+.++|+-+||+|..+.| ..|||
T Consensus 1 ~~tlvf~iL~~Eial~~iL~Lpip~r~~~~~~~~~~~~~~~~~~~~~i~~~~~villlfiDsvr~i~~~~~~~~~~~n~~ 80 (216)
T KOG1962|consen 1 YWTLVFTILYAEIALFLILLLPIPPRRRRKIFKDRLKSGLAPQVLKTIATTMIVILLLFIDSVRRIQKYVSEYGSMANPT 80 (216)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999876 57799
Q ss_pred HHHHHHHhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 045614 80 EEVLMANLLLQASLMG--------FSLFLAMITDRLHYYIKELHLVRQT 120 (123)
Q Consensus 80 DqVL~a~hLLEAsLmG--------~~LFLal~IDRlHhYireLr~lrk~ 120 (123)
||+.+++|++|++++| |+|||+++|||+|||++++..+|.|
T Consensus 81 ~~~~a~~~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~l~~l~~~ 129 (216)
T KOG1962|consen 81 DQPLARTHLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLRELATLRAN 129 (216)
T ss_pred cchHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999 9999999999999999999999974
No 2
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=99.87 E-value=1e-21 Score=147.12 Aligned_cols=121 Identities=26% Similarity=0.444 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHHHHHHH--hhchhHHHHHHHhhh-hccCCCceeeeehhhHHHHHHHHHHHHHHHHHhhhccCCC---
Q 045614 2 IYLLFKIVFTEMALILTLL--FRNPLRKFVIMGLDR-LKRGRGPLVAKSVGATVLVVLCSAVYSAMEIQRRAREGGA--- 75 (123)
Q Consensus 2 iqLLF~v~f~E~a~il~Ll--fktPlRkLvi~~lD~-~KrGrGP~~vKTva~TvlVvl~Ss~ySi~kIq~R~~~~g~--- 75 (123)
.+++|+++.+|+++.++|+ |..|.||.++..+|. .+.+++|.++++++++++++|++|++++.|++++..+.+.
T Consensus 5 ~~lvf~~L~~Ei~~~~lL~lPlp~~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lf~ds~~~~~k~~~~~~~~~~~~~ 84 (192)
T PF05529_consen 5 WSLVFGLLYAEIAVLLLLVLPLPSPIRRKIFKFLDKSFFSGKFKTVFKILLAILLLLFLDSIRRMYKYSSEYEEAKDDHP 84 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCC
Confidence 5899999999999999999 567999999998875 5677799999999999999999999999999999886432
Q ss_pred -CC-chHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045614 76 -IN-PTEEVLMANLLLQ--ASLMGFSLFLAMITDRLHYYIKELHLVRQTLE 122 (123)
Q Consensus 76 -~n-ptDqVL~a~hLLE--AsLmG~~LFLal~IDRlHhYireLr~lrk~mE 122 (123)
.+ +.||++++++--| ..+.||+|||+++|+|+|+|++|+..+++++|
T Consensus 85 ~~~~~~~~~~~~~fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~ 135 (192)
T PF05529_consen 85 NPDRTEDQVLAKKFRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLE 135 (192)
T ss_pred CccchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 5799999999999 59999999999999999999999999998866
No 3
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.2 Score=40.78 Aligned_cols=116 Identities=21% Similarity=0.303 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhch--hHHHHHHHhhhhccCCC-ceeeeehhhHHHHHHHHHHHHHHHHHhhh-ccCCC--
Q 045614 2 IYLLFKIVFTEMALILTLLFRNP--LRKFVIMGLDRLKRGRG-PLVAKSVGATVLVVLCSAVYSAMEIQRRA-REGGA-- 75 (123)
Q Consensus 2 iqLLF~v~f~E~a~il~LlfktP--lRkLvi~~lD~~KrGrG-P~~vKTva~TvlVvl~Ss~ySi~kIq~R~-~~~g~-- 75 (123)
.|++|.++..||++..++..-.| +||-........+--|| -.+.|-+.+-++++|.-|.+-+..+-+-. ...+.
T Consensus 5 ~~lvfslL~vEm~~f~il~LPlp~r~RR~l~~~~~~~~~~~~~k~il~i~~~~IllLFiDS~~Rv~rv~~~~nl~~a~~n 84 (192)
T COG5374 5 YTLVFSLLVVEMVMFFILVLPLPKRLRRSLMKLYSTSKVYRGFKHILKITFIFILLLFIDSWKRVYRVSKEANLYSASIN 84 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhhhhcccccc
Confidence 37899999999999988888876 57889998888887775 34567778888999999988755443322 11232
Q ss_pred ---CCchHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045614 76 ---INPTEEVLMANLLLQA--SLMGFSLFLAMITDRLHYYIKELHLVR 118 (123)
Q Consensus 76 ---~nptDqVL~a~hLLEA--sLmG~~LFLal~IDRlHhYireLr~lr 118 (123)
++|- +|+.++--=+- -+-|+.|||.+++-|---|.+|+-.-.
T Consensus 85 ~~~~~~i-~~las~fy~qrnmyl~g~~L~l~~~v~~~~~~v~~ml~~~ 131 (192)
T COG5374 85 NYAVTRI-AVLASRFYAQRNMYLSGSALFLSIVVMRVMSIVEEMLEEN 131 (192)
T ss_pred ccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3332 46666544332 467999999999999999999986654
No 4
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=79.77 E-value=1.3 Score=24.42 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=16.1
Q ss_pred cCCCCCchHHHHHHHhHH
Q 045614 72 EGGAINPTEEVLMANLLL 89 (123)
Q Consensus 72 ~~g~~nptDqVL~a~hLL 89 (123)
..|.+|++|-.++.+|||
T Consensus 4 ~DG~vna~D~~~lk~ylL 21 (21)
T PF00404_consen 4 GDGKVNAIDLALLKKYLL 21 (21)
T ss_dssp SSSSSSHHHHHHHHHHHC
T ss_pred CCCcCCHHHHHHHHHHhC
Confidence 468999999999999985
No 5
>COG2715 SpmA Uncharacterized membrane protein, required for spore maturation in B.subtilis. [General function prediction only]
Probab=62.77 E-value=23 Score=29.35 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=36.3
Q ss_pred HHHHHHHHHH----HHHHHHHhhhccCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045614 51 TVLVVLCSAV----YSAMEIQRRAREGGAINPTEEVLMANLLLQASLMGFSLFLAMITDRLHYYIKELHLVRQT 120 (123)
Q Consensus 51 TvlVvl~Ss~----ySi~kIq~R~~~~g~~nptDqVL~a~hLLEAsLmG~~LFLal~IDRlHhYireLr~lrk~ 120 (123)
+.+|+=.||+ .++.-||- .-|..||||-|+=. +-|+.-++ --|+++||+|+|+|--+ +|..
T Consensus 134 ~FLviNta~itLiPtTVi~iR~---a~gs~~ptdI~~pt---ilaT~~s~--~~gii~~~~~qr~r~~~-~~ay 198 (206)
T COG2715 134 MFLVINTASITLIPTTVISIRM---AYGSKNPTDIFLPT---ILATVCST--IAGIIAVALLQRLRLFK-LLAY 198 (206)
T ss_pred hhheecccceeeecHHHHHHHH---HhcCCCchhhhhHH---HHHHHHHH--HHHHHHHHHHHHHHHHh-HHHH
Confidence 4444444544 24444532 34678999987632 22444333 35889999999998665 4443
No 6
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=47.65 E-value=92 Score=28.72 Aligned_cols=52 Identities=25% Similarity=0.194 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045614 55 VLCSAVYSAMEIQRRAREGGAINPTEEVLMANLLLQASLMGFSLFLAMITDRLHYYIK 112 (123)
Q Consensus 55 vl~Ss~ySi~kIq~R~~~~g~~nptDqVL~a~hLLEAsLmG~~LFLal~IDRlHhYir 112 (123)
+++|++-||+-+-.|-.-. .-||-|=-+. |+--++.| +|||..|.|+|||=.
T Consensus 228 llasllnsi~l~~arQ~~~-fs~l~dLll~---l~~Qal~G--l~LGiaIqrlrelnq 279 (497)
T COG3851 228 LLASLLNSIALTIARQTWR-FSHLVDLLLS---LLAQALTG--LGLGIAIQRLRELNQ 279 (497)
T ss_pred HHHHHHHHHHHHHHHHHcc-cCCHHHHHHH---HHHHHHHH--HHHHHHHHHHHHHHH
Confidence 6788888888866665544 5677664442 34445555 689999999999864
No 7
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=44.53 E-value=81 Score=30.37 Aligned_cols=94 Identities=20% Similarity=0.287 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHH-------Hhh----chhHHHHHHHhhhhccCCCceeeeehhhHHHHHHHHHHHHHHHHHhhh
Q 045614 2 IYLLFKIVFTEMALILTL-------LFR----NPLRKFVIMGLDRLKRGRGPLVAKSVGATVLVVLCSAVYSAMEIQRRA 70 (123)
Q Consensus 2 iqLLF~v~f~E~a~il~L-------lfk----tPlRkLvi~~lD~~KrGrGP~~vKTva~TvlVvl~Ss~ySi~kIq~R~ 70 (123)
+|..|.+.+.+.+++.++ .|. -|+|+| +.+-|.++.|-=-+.|+--..-=.|=..|+.++.|.=|=|.
T Consensus 275 lQ~~F~~~yl~~aLLvll~AIw~aia~A~rivrPi~~L-i~aa~~Va~GdL~v~vpV~~~d~dvg~Ls~~FN~M~~eL~~ 353 (712)
T COG5000 275 LQIAFALLYLSTALLVLLAAIWTAIAFARRIVRPIRKL-IEAADEVADGDLDVQVPVRRVDEDVGRLSKAFNKMTEQLSS 353 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhcCCCcceeeeecCcchHHHHHHHHHHHHHHHHH
Confidence 455566555555544433 222 499987 56779999998666655444444456678888877655444
Q ss_pred ccCCCCCchHHHHHHHhHHHHHHHHH
Q 045614 71 REGGAINPTEEVLMANLLLQASLMGF 96 (123)
Q Consensus 71 ~~~g~~nptDqVL~a~hLLEAsLmG~ 96 (123)
.......--|+.=-++|-+||-|=|.
T Consensus 354 qq~~l~~ak~~~e~rr~f~E~VLsgv 379 (712)
T COG5000 354 QQEALERAKDALEQRRRFLEAVLSGL 379 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 43333334567777899999988774
No 8
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=43.18 E-value=73 Score=27.91 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=53.7
Q ss_pred HHHhhhh-ccCCCceee-eehhhHHHHHHHHHHHHHHHHHhhhccCC-CCCchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045614 30 IMGLDRL-KRGRGPLVA-KSVGATVLVVLCSAVYSAMEIQRRAREGG-AINPTEEVLMANLLLQASLMGFSLFLAMITDR 106 (123)
Q Consensus 30 i~~lD~~-KrGrGP~~v-KTva~TvlVvl~Ss~ySi~kIq~R~~~~g-~~nptDqVL~a~hLLEAsLmG~~LFLal~IDR 106 (123)
|.+++.+ +-||--.-- -++-+.+.+..+...|=.++=+||..+.+ .---|.|-+|+.+|=-|-+.||..=-++---+
T Consensus 109 inAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS~al~VaF~~a~~l~~T~ 188 (314)
T COG3965 109 INALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSAALFVAFAAAWLLAGTK 188 (314)
T ss_pred HHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 4555544 445521111 12223334444555666666667887777 34568999999999999999998877777788
Q ss_pred HHHHH
Q 045614 107 LHYYI 111 (123)
Q Consensus 107 lHhYi 111 (123)
.|||.
T Consensus 189 ~a~l~ 193 (314)
T COG3965 189 FAHLV 193 (314)
T ss_pred hhhhh
Confidence 88875
No 9
>COG3030 FxsA Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]
Probab=40.97 E-value=1.3e+02 Score=23.65 Aligned_cols=55 Identities=31% Similarity=0.459 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHHH--HHHhhh--------ccCCCCCchHHHHHHHhHHHH-----------HHHHHHHHHHHH
Q 045614 48 VGATVLVVLCSAVYSAM--EIQRRA--------REGGAINPTEEVLMANLLLQA-----------SLMGFSLFLAMI 103 (123)
Q Consensus 48 va~TvlVvl~Ss~ySi~--kIq~R~--------~~~g~~nptDqVL~a~hLLEA-----------sLmG~~LFLal~ 103 (123)
+.-|++++++||+.-+. +.|.++ ...| =+|++|.+..-.+.=| +.+|+.+|+-..
T Consensus 29 ~~~Tl~Lvilt~~~G~~l~r~qG~~~l~~~q~~~~~G-~~P~~~ll~g~~~~vagiLLl~PGFvTd~lGlllliP~~ 104 (158)
T COG3030 29 VGWTLLLVILTSVLGALLLRVQGFGTLLRAQAALASG-EVPGAELLDGLLLIIAGILLLIPGFVTDILGLLLLIPPT 104 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCcHHHHHHhHHHHHHHHHHHcchHHHHHHHHHHhhhhH
Confidence 45789999999986554 333332 3446 6899999887776655 457777777654
No 10
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=37.63 E-value=90 Score=23.25 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045614 88 LLQASLMGFSLFLAMITDRLHYYIKELHLVRQT 120 (123)
Q Consensus 88 LLEAsLmG~~LFLal~IDRlHhYireLr~lrk~ 120 (123)
.|-|.++|..+=....|-|+-.|=||.+.+|++
T Consensus 65 il~s~v~G~Li~~~~~~~Ri~~lrr~~krlr~~ 97 (98)
T COG5416 65 ILGAAVVGALIAMFAGIARILQLRREVKRLRAE 97 (98)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 466788898888888999999999999999985
No 11
>PF14217 DUF4327: Domain of unknown function (DUF4327)
Probab=34.06 E-value=19 Score=25.02 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.1
Q ss_pred HHHHHHHhhh---ccCCCCCchHHHH
Q 045614 61 YSAMEIQRRA---REGGAINPTEEVL 83 (123)
Q Consensus 61 ySi~kIq~R~---~~~g~~nptDqVL 83 (123)
|||-+||.-+ .+.|.++|+|.+-
T Consensus 2 ysi~~iq~ear~LV~~g~v~r~qpI~ 27 (68)
T PF14217_consen 2 YSIDKIQDEARSLVESGVVSRQQPIY 27 (68)
T ss_pred CcHHHHHHHHHHHHHcCCCCccCcHH
Confidence 8999999766 5789999998763
No 12
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=32.11 E-value=1.8e+02 Score=20.34 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=45.7
Q ss_pred hchhHHHHHHHhhhhccCCCceeeeehhhHHHHHHHHHHHHHHHHHhhhcc--CCCCCchHHHHHHHhHHHHH
Q 045614 22 RNPLRKFVIMGLDRLKRGRGPLVAKSVGATVLVVLCSAVYSAMEIQRRARE--GGAINPTEEVLMANLLLQAS 92 (123)
Q Consensus 22 ktPlRkLvi~~lD~~KrGrGP~~vKTva~TvlVvl~Ss~ySi~kIq~R~~~--~g~~nptDqVL~a~hLLEAs 92 (123)
|...+|++=..++ +-=.|-++-.++|.--|..+.-+=...+||.++.+ .|-+-| .|+=||.
T Consensus 19 k~~iKr~~~~~~~---~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P-------~HireA~ 81 (85)
T cd08048 19 KAAIKRLIQSVTG---QSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQP-------RHLREAY 81 (85)
T ss_pred HHHHHHHHHHHcC---CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCc-------HHHHHHH
Confidence 4466777554554 12257788888888889999999999999999999 466666 6888874
No 13
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=31.64 E-value=95 Score=24.11 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=28.2
Q ss_pred HHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045614 85 ANLLLQASLM-GFSLFLAMITDRLHYYIKELHLVRQTLE 122 (123)
Q Consensus 85 a~hLLEAsLm-G~~LFLal~IDRlHhYireLr~lrk~mE 122 (123)
=+||+.+-=| |..| +++-=+|||.++.+..|+.++
T Consensus 190 l~hL~~~~e~l~~~L---l~~HNl~~~~~~~~~iR~~I~ 225 (238)
T PF01702_consen 190 LHHLLKAKEMLGPVL---LSIHNLHHYLRFFKEIREAIR 225 (238)
T ss_dssp HHHHHHTTHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3588887544 7665 688999999999999998865
No 14
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=30.11 E-value=45 Score=25.63 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=22.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhchhHHH
Q 045614 1 MIYLLFKIVFTEMALILTLLFRNPLRKF 28 (123)
Q Consensus 1 MiqLLF~v~f~E~a~il~LlfktPlRkL 28 (123)
|-|-+|.++|.=.++..+..||+|.|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~ffR~p~R~~ 30 (189)
T TIGR00164 3 MYHGWISILFWVFTLFTLQFFRDPDREI 30 (189)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4577777777777778889999999954
No 15
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=28.99 E-value=86 Score=27.27 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=28.4
Q ss_pred HhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 045614 86 NLLLQA-SLMGFSLFLAMITDRLHYYIKELHLVRQTLEG 123 (123)
Q Consensus 86 ~hLLEA-sLmG~~LFLal~IDRlHhYireLr~lrk~mE~ 123 (123)
+||+.+ -..|..| +.|-=||||.++.+..|+++++
T Consensus 334 hHL~~~~E~l~~~L---ltiHNl~~~~~l~~~iR~aI~~ 369 (372)
T PRK01008 334 RHLFKVHEPNAGIW---ASIHNLHHMQQVMKEIREQILN 369 (372)
T ss_pred HHHhcCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHc
Confidence 688864 4566666 7899999999999999998763
No 16
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=28.63 E-value=65 Score=27.50 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=20.3
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 045614 92 SLMGFSLFL-AMITDRLHYYIKELHLVRQT 120 (123)
Q Consensus 92 sLmG~~LFL-al~IDRlHhYireLr~lrk~ 120 (123)
-+.|..||+ |+.|.=-||+| ||.|||.
T Consensus 149 ~liG~~lfv~Gm~iN~~sD~i--L~~LRk~ 176 (257)
T KOG1638|consen 149 FLIGVVLFVTGMLINIYSDNI--LRTLRKP 176 (257)
T ss_pred HHHHHHHHHHHhhhhhhhHHH--HHHhhcC
Confidence 367888885 78887777766 7888875
No 17
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=28.44 E-value=1.7e+02 Score=18.89 Aligned_cols=27 Identities=15% Similarity=0.269 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 045614 90 QASLMGFSLFLAMI----TDRLHYYIKELHL 116 (123)
Q Consensus 90 EAsLmG~~LFLal~----IDRlHhYireLr~ 116 (123)
=.+|+|++++-|.. .=++.+|.|..+.
T Consensus 18 V~~Lig~T~~~g~~~~~~~y~~~~~~r~~~~ 48 (59)
T PF14880_consen 18 VLGLIGFTVYGGGLTVYTVYSYFKYNRRRRA 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888876543 3344455544444
No 18
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=28.27 E-value=1.7e+02 Score=18.78 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 045614 91 ASLMGFSLFLAMITDRLHYYIKELHLVRQTLEG 123 (123)
Q Consensus 91 AsLmG~~LFLal~IDRlHhYireLr~lrk~mE~ 123 (123)
+.+.-+.--++=+=+=+.|.++|.+-+|+++|.
T Consensus 8 ~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~e 40 (45)
T PF11598_consen 8 KQLSELNQMLQELKELLRQQIKETRFLRNTIME 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555667778899999999999999763
No 19
>PF05024 Gpi1: N-acetylglucosaminyl transferase component (Gpi1); InterPro: IPR007720 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This chemically simple step is genetically complex because three or four genes are required in both Saccharomyces cerevisiae (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively [].; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=25.55 E-value=61 Score=25.28 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=21.7
Q ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045614 76 INPTEEVLMANLLLQASLMGFSLFLAMITDR 106 (123)
Q Consensus 76 ~nptDqVL~a~hLLEAsLmG~~LFLal~IDR 106 (123)
+.|.-+.+. +-+--++++|.+.++|+++|=
T Consensus 88 i~~~~~~~~-~~i~~~~~~G~S~~lal~~D~ 117 (189)
T PF05024_consen 88 ISPLLPLLI-WIIGISGLLGASFFLALLSDL 117 (189)
T ss_pred cccHHHHHH-HHHHHHHHHhHHHHHHHHHHH
Confidence 445444443 345667899999999999995
No 20
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=24.37 E-value=1.3e+02 Score=25.61 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=43.3
Q ss_pred HhhhhccCCCceeeeehhhHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHH-----hHHHHHHHHHHHHHH
Q 045614 32 GLDRLKRGRGPLVAKSVGATVLVVLCSAVYSAMEIQRRAREGGAINPTEEVLMAN-----LLLQASLMGFSLFLA 101 (123)
Q Consensus 32 ~lD~~KrGrGP~~vKTva~TvlVvl~Ss~ySi~kIq~R~~~~g~~nptDqVL~a~-----hLLEAsLmG~~LFLa 101 (123)
+..++.+||-|+++-=-+-...|.+.|-.....++..=+.+.| .-.||++|-- -.+|-|++-|.|--|
T Consensus 34 s~~KL~~~~SpI~~tyY~llw~v~llnl~rc~vsm~~~~~~~~--~~~d~~lW~ilrfflL~lEvSvvvFgL~fg 106 (261)
T PF10160_consen 34 SRRKLRHTRSPIFITYYALLWVVALLNLARCFVSMWVCSPGKG--GIADKVLWNILRFFLLSLEVSVVVFGLQFG 106 (261)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556789999976655555556666666666777665444333 4578998842 246777776665443
No 21
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=24.11 E-value=1.9e+02 Score=22.49 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=36.4
Q ss_pred hhhccCCCceeeeehhhHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045614 34 DRLKRGRGPLVAKSVGATVLVVLCSAVYSAMEIQRRAREGGAINPTEEVLMANLLLQASLMGFSLFLAMIT 104 (123)
Q Consensus 34 D~~KrGrGP~~vKTva~TvlVvl~Ss~ySi~kIq~R~~~~g~~nptDqVL~a~hLLEAsLmG~~LFLal~I 104 (123)
-|.|+++.|+-.|.+--=. +++|+-..|.- +|--++=+ -..+||.+.|.. |-=..|
T Consensus 20 ~R~ka~~rP~~~kkIIlPp--lfmstG~lmf~-----------~P~~~~~~-~~~l~A~~~G~l-Fs~~Li 75 (148)
T PF07301_consen 20 IRMKASKRPVNGKKIILPP--LFMSTGFLMFV-----------FPFFRPPW-LEVLEAFLVGAL-FSYPLI 75 (148)
T ss_pred HHHHHccCCCCcchHHHhH--HHHHHHHHHHh-----------CccccchH-HHHHHHHHHHHH-HHHHHH
Confidence 4899999999888765444 45666655543 44444433 378999999976 433333
No 22
>PLN02392 probable steroid reductase DET2
Probab=22.41 E-value=3.2e+02 Score=22.86 Aligned_cols=63 Identities=13% Similarity=0.026 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHH--HHhhhccCCCCCchHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045614 51 TVLVVLCSAVYSAME--IQRRAREGGAINPTEEVL-MANLLLQASLMGFSLFLAMITDRLHYYIKELHLVRQ 119 (123)
Q Consensus 51 TvlVvl~Ss~ySi~k--Iq~R~~~~g~~nptDqVL-~a~hLLEAsLmG~~LFLal~IDRlHhYireLr~lrk 119 (123)
.+.|+++.-+++..+ +|.|+.-...-+.+|..+ +. -...|..+|+.-+.+-.||= ..||.+||
T Consensus 113 p~~i~~~a~~F~~~Ng~lq~~wl~~~~~~y~~~~~~~~-----~~~iG~~lF~~g~~~N~~sh-~~L~~LRk 178 (260)
T PLN02392 113 PVSMALLAFGFNLLNAYLQARWVSHYKDDYEDGGWFWW-----RFFGGLVVFLWGMRINVWSD-RVLVGLKR 178 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCcccccH-----HHHHHHHHHHHHHHHHHHHH-HHHHhccc
Confidence 344555555555543 677755321012222211 11 15679999986666654331 23555565
No 23
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.20 E-value=2.1e+02 Score=17.78 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=13.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Q 045614 88 LLQASLMGFSL-FLAMITDRLHYYIKELHLVRQTL 121 (123)
Q Consensus 88 LLEAsLmG~~L-FLal~IDRlHhYireLr~lrk~m 121 (123)
++=|.+.|+.+ ++.....++.+ =+|+|.++|++
T Consensus 24 il~~f~~G~llg~l~~~~~~~~~-r~~~~~~~k~l 57 (68)
T PF06305_consen 24 ILIAFLLGALLGWLLSLPSRLRL-RRRIRRLRKEL 57 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34445555543 22222333222 24445555443
No 24
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=22.20 E-value=67 Score=25.01 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=28.0
Q ss_pred hccCCCceeeeehhhHHHHHHHHHHHHHHHHHhhhc
Q 045614 36 LKRGRGPLVAKSVGATVLVVLCSAVYSAMEIQRRAR 71 (123)
Q Consensus 36 ~KrGrGP~~vKTva~TvlVvl~Ss~ySi~kIq~R~~ 71 (123)
+=-|. |+-...+.|..+++.+..+|+..|.|++..
T Consensus 267 ~~lge-~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 267 LFFGT-KISPQQVFGTGIAIAGVFLYSRVKAQKPKP 301 (302)
T ss_pred hhcCC-CCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 33344 777888999999999999999998877654
No 25
>PTZ00233 variable surface protein Vir18; Provisional
Probab=22.01 E-value=59 Score=29.79 Aligned_cols=17 Identities=47% Similarity=0.868 Sum_probs=12.6
Q ss_pred HHHHHHHhh-chhHHHHH
Q 045614 14 ALILTLLFR-NPLRKFVI 30 (123)
Q Consensus 14 a~il~Llfk-tPlRkLvi 30 (123)
++.|-|||| |||-+.+=
T Consensus 445 vLLLGLLFKyTPLWRvLT 462 (509)
T PTZ00233 445 ALLLGLLFKYTPLWRVLT 462 (509)
T ss_pred HHHHHHhhccchhHHhhh
Confidence 455579999 79987653
No 26
>PRK13260 2,3-diketo-L-gulonate reductase; Provisional
Probab=21.32 E-value=78 Score=26.88 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=32.9
Q ss_pred CCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045614 75 AINPTEEVLMANLLLQASLMGFSLFLAMITDRLHYYIKELHL 116 (123)
Q Consensus 75 ~~nptDqVL~a~hLLEAsLmG~~LFLal~IDRlHhYireLr~ 116 (123)
=+++.|--..|.||.||.+.|.- +-=+-|+.+|++.++.
T Consensus 20 G~~~~~A~~vA~~Lv~adl~G~~---SHGl~rlp~Y~~~l~~ 58 (332)
T PRK13260 20 GVDEETADACAEMFARTTESGVY---SHGVNRFPRFIQQLEN 58 (332)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCc---ccCHHHHHHHHHHHHc
Confidence 37899999999999999999964 5556799999998864
No 27
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=21.01 E-value=1.8e+02 Score=22.23 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=19.1
Q ss_pred HHHhhhccCCCCCchHHHHHHHhHHHHH
Q 045614 65 EIQRRAREGGAINPTEEVLMANLLLQAS 92 (123)
Q Consensus 65 kIq~R~~~~g~~nptDqVL~a~hLLEAs 92 (123)
++|.+..++| .||--+.+-|||-.
T Consensus 44 eaQ~erkes~----Fnq~eFnK~lLE~v 67 (118)
T PRK13713 44 EAQMERKESG----FNQTEFNKLLLECV 67 (118)
T ss_pred HHHHHhhcCc----ccHHHHHHHHHHHH
Confidence 6777666665 88999999999965
No 28
>PF02615 Ldh_2: Malate/L-lactate dehydrogenase; InterPro: IPR003767 The malate dehydrogenase (MDH) of some extremophilies is more similar to the L-lactate dehydrogenases (L-LDH) 1.1.1.27 from EC from various sources than to other MDHs []. This family consists of bacterial and archaeal malate/L-lactate dehydrogenases. The archaebacterial malate dehydrogenase 1.1.1.37 from EC, 1.1.1.82 from EC deviates from the eubacterial and eukaryotic enzymes having a low selectivity for the coenzyme (NAD(H) or NADP(H)) and catalyzing the reduction of oxalacetate to malate more efficiently than the reverse reaction [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1VBI_A 2G8Y_B 2X06_H 1Z2I_B 1X0A_A 1V9N_A 1XRH_G 3I0P_A 2CWH_B 2CWF_B ....
Probab=20.35 E-value=77 Score=26.89 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=29.5
Q ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045614 76 INPTEEVLMANLLLQASLMGFSLFLAMITDRLHYYIKELHL 116 (123)
Q Consensus 76 ~nptDqVL~a~hLLEAsLmG~~LFLal~IDRlHhYireLr~ 116 (123)
+++.|--..|+||.+|.+.|.- +-=+-|+.+|++.|+.
T Consensus 21 ~~~~~A~~vA~~Lv~Adl~G~~---SHGv~rlp~Y~~~l~~ 58 (335)
T PF02615_consen 21 VSEEDAEIVADVLVEADLRGVD---SHGVARLPRYVKRLRS 58 (335)
T ss_dssp --HHHHHHHHHHHHHHHHTT-G---GGTGGGHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhcCCCc---cCCHhHHHHHHHHhhc
Confidence 6889999999999999999973 3344599999998875
No 29
>PF01313 Bac_export_3: Bacterial export proteins, family 3; InterPro: IPR002191 The fliL operon of Escherichia coli contains seven genes (including fliO, fliP, fliQ and fliR) involved in the biosynthesis and functioning of the flagellar organelle []. The fliO, fliP, fliQ and fliR genes encode highly hydrophobic polypeptides. The fliQ gene product, a small integral membrane protein that contains two putative transmembrane (TM) regions, is required for the assembly of the rivet at the earliest stage of flagellar biosynthesis. Proteins sharing an evolutionary relationship with FliQ have been found in a range of bacteria: these include Yop translocation protein S from Yersinia pestis []; surface antigen-presentation protein SpaQ from Salmonella typhimurium and Shigella flexneri []; and probable translocation protein Y4YM from Rhizobium sp. (strain NGR234) []. All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways [].; GO: 0009306 protein secretion, 0016020 membrane
Probab=20.22 E-value=1.3e+02 Score=20.80 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045614 49 GATVLVVLCSAVYSAMEIQRRAREGGAINPTEEVLMANLLLQASLMGFSLFLAMITDRLHYYIKE 113 (123)
Q Consensus 49 a~TvlVvl~Ss~ySi~kIq~R~~~~g~~nptDqVL~a~hLLEAsLmG~~LFLal~IDRlHhYire 113 (123)
++++.-+..|=.-...+||.-..-- .-. +=|......+|.++|..++..|.||
T Consensus 24 ~alvvGlvIsi~QA~TqIqEqTL~f-----------vpK-l~av~~~l~~~g~wm~~~l~~ft~q 76 (76)
T PF01313_consen 24 VALVVGLVISIFQAATQIQEQTLSF-----------VPK-LLAVFLVLLLFGPWMLQQLVDFTRQ 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH-----------HHH-HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444444555556677788543221 112 2356677888999999999999886
Done!