Query 045614
Match_columns 123
No_of_seqs 39 out of 41
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 06:05:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ccl_B Endo-1,4-beta-xylanase 44.8 11 0.00037 23.3 1.7 19 72-90 9-27 (63)
2 2vn6_B Endoglucanase A; cell a 42.1 16 0.00053 22.7 2.2 19 72-90 9-27 (64)
3 3ul4_B Cellulosome enzyme, doc 40.9 13 0.00044 23.7 1.7 19 72-90 10-28 (65)
4 2ljb_A M2 protein, BM2 protein 40.5 21 0.00073 21.5 2.5 21 89-109 11-31 (35)
5 1daq_A Endoglucanase SS, CELS; 36.7 23 0.0008 22.4 2.4 18 73-90 12-29 (71)
6 1bh9_B TAFII28; histone fold, 35.3 75 0.0025 21.5 4.9 61 22-92 19-79 (89)
7 4fl4_A Glycoside hydrolase fam 35.3 17 0.00057 24.8 1.6 18 72-89 27-44 (88)
8 4dh2_B Dockerin type 1; cellul 34.0 19 0.00064 23.9 1.7 19 72-90 12-30 (82)
9 1afo_A Glycophorin A; integral 29.1 48 0.0016 20.4 2.8 18 90-107 20-37 (40)
10 3bld_A Queuine tRNA-ribosyltra 21.9 1E+02 0.0034 25.6 4.3 36 85-123 331-367 (386)
11 2ksr_A Neuronal acetylcholine 21.3 27 0.00092 25.7 0.7 54 41-111 88-143 (164)
No 1
>2ccl_B Endo-1,4-beta-xylanase Y; cell adhesion, cohesin/dockerin complex, cellulosome, cohesi dockerin, scaffolding, cellulose degradation; 2.03A {Clostridium thermocellum} SCOP: a.139.1.1 PDB: 1ohz_B
Probab=44.84 E-value=11 Score=23.29 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=16.0
Q ss_pred cCCCCCchHHHHHHHhHHH
Q 045614 72 EGGAINPTEEVLMANLLLQ 90 (123)
Q Consensus 72 ~~g~~nptDqVL~a~hLLE 90 (123)
..|.+|.+|-+++++|++.
T Consensus 9 ~DG~vn~~D~~~l~~yllg 27 (63)
T 2ccl_B 9 GDGTINSTDLTMLKRSVLR 27 (63)
T ss_dssp CSSSCCHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHHcC
Confidence 3588999999999999873
No 2
>2vn6_B Endoglucanase A; cell adhesion, carbohydrate metabolism, polysaccharide degradation, hydrolase, glycosidase, cellulose degradation; 1.49A {Clostridium cellulolyticum} PDB: 2vn5_B
Probab=42.14 E-value=16 Score=22.74 Aligned_cols=19 Identities=11% Similarity=0.328 Sum_probs=15.4
Q ss_pred cCCCCCchHHHHHHHhHHH
Q 045614 72 EGGAINPTEEVLMANLLLQ 90 (123)
Q Consensus 72 ~~g~~nptDqVL~a~hLLE 90 (123)
..|.+|.+|-+++++|++.
T Consensus 9 ~DG~vn~~D~~~l~~yllg 27 (64)
T 2vn6_B 9 NDGNVDSTDFAGLKKYIMA 27 (64)
T ss_dssp SSSCCSHHHHHHHHHHHHS
T ss_pred CCCcCCHHHHHHHHHHHcc
Confidence 3578899999999988874
No 3
>3ul4_B Cellulosome enzyme, dockerin type I; cohesin, type I cohesin-dockerin COMP protein-protein interaction, cell adhesion; HET: PEG; 1.95A {Clostridium thermocellum}
Probab=40.91 E-value=13 Score=23.72 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=16.0
Q ss_pred cCCCCCchHHHHHHHhHHH
Q 045614 72 EGGAINPTEEVLMANLLLQ 90 (123)
Q Consensus 72 ~~g~~nptDqVL~a~hLLE 90 (123)
..|.+|.+|-+++.+|++.
T Consensus 10 ~DG~Vn~~D~~llk~yllg 28 (65)
T 3ul4_B 10 RNGIVNDEDYILLKNYLLR 28 (65)
T ss_dssp CSSCCSHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHHCC
Confidence 4588999999999998874
No 4
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=40.52 E-value=21 Score=21.45 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045614 89 LQASLMGFSLFLAMITDRLHY 109 (123)
Q Consensus 89 LEAsLmG~~LFLal~IDRlHh 109 (123)
.-|+.+|..=|..+++|||-.
T Consensus 11 iaA~IigiLHlilWildrLff 31 (35)
T 2ljb_A 11 VAASIIGILHFIAWTIGHLNQ 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHh
Confidence 458899999999999999853
No 5
>1daq_A Endoglucanase SS, CELS; cellulose degradation, cellulosome, calcium-binding, hydrolase; NMR {Clostridium thermocellum} SCOP: a.139.1.1 PDB: 1dav_A
Probab=36.69 E-value=23 Score=22.40 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=14.6
Q ss_pred CCCCCchHHHHHHHhHHH
Q 045614 73 GGAINPTEEVLMANLLLQ 90 (123)
Q Consensus 73 ~g~~nptDqVL~a~hLLE 90 (123)
.|.+|.+|-+++++|++.
T Consensus 12 Dg~vn~~D~~~l~~yllg 29 (71)
T 1daq_A 12 DGKVNSTDAVALKRYVLR 29 (71)
T ss_dssp SSCSSGGGHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHcC
Confidence 478888888888888863
No 6
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=35.31 E-value=75 Score=21.47 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=44.1
Q ss_pred hchhHHHHHHHhhhhccCCCceeeeehhhHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHHhHHHHH
Q 045614 22 RNPLRKFVIMGLDRLKRGRGPLVAKSVGATVLVVLCSAVYSAMEIQRRAREGGAINPTEEVLMANLLLQAS 92 (123)
Q Consensus 22 ktPlRkLvi~~lD~~KrGrGP~~vKTva~TvlVvl~Ss~ySi~kIq~R~~~~g~~nptDqVL~a~hLLEAs 92 (123)
|...+|++=..+|+- =.+=++-.++|---+..+.-+=...+||.++.|.|-+-| .|+=||.
T Consensus 19 k~~vKrl~~~~~~~~---v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P-------~HireA~ 79 (89)
T 1bh9_B 19 KAAIKRLIQSITGTS---VSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQP-------KHMREAV 79 (89)
T ss_dssp HHHHHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCH-------HHHHHHH
T ss_pred HHHHHHHHHHHcCCC---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc-------HHHHHHH
Confidence 446677764444331 134466778888888888888899999999999887777 6888874
No 7
>4fl4_A Glycoside hydrolase family 9; structural genomics, montreal-kingston bacterial structural initiative, BSGI, dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Probab=35.28 E-value=17 Score=24.84 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=11.0
Q ss_pred cCCCCCchHHHHHHHhHH
Q 045614 72 EGGAINPTEEVLMANLLL 89 (123)
Q Consensus 72 ~~g~~nptDqVL~a~hLL 89 (123)
..|.+|.+|-+++.++++
T Consensus 27 gDG~Vn~~D~~llk~yll 44 (88)
T 4fl4_A 27 DDGKVNSTDLTLLKRYVL 44 (88)
T ss_dssp CSSCCSHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHc
Confidence 346666666666666665
No 8
>4dh2_B Dockerin type 1; cellulosome, cohesin, type I cohesin-dockerin, Pro protein interaction, cell adhesion; 1.75A {Clostridium thermocellum}
Probab=34.05 E-value=19 Score=23.89 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=16.1
Q ss_pred cCCCCCchHHHHHHHhHHH
Q 045614 72 EGGAINPTEEVLMANLLLQ 90 (123)
Q Consensus 72 ~~g~~nptDqVL~a~hLLE 90 (123)
..|.+|.+|-+++.+|++.
T Consensus 12 ~DG~Vn~~D~~llk~yllg 30 (82)
T 4dh2_B 12 ADGVVNISDYVLMKRYILR 30 (82)
T ss_dssp CSSSCSHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHHcC
Confidence 4589999999999999874
No 9
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=29.14 E-value=48 Score=20.39 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045614 90 QASLMGFSLFLAMITDRL 107 (123)
Q Consensus 90 EAsLmG~~LFLal~IDRl 107 (123)
-|-..|..||.++.|-|+
T Consensus 20 maGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 20 MAGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 366789999999999887
No 10
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ...
Probab=21.86 E-value=1e+02 Score=25.63 Aligned_cols=36 Identities=19% Similarity=0.486 Sum_probs=28.0
Q ss_pred HHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 045614 85 ANLLLQAS-LMGFSLFLAMITDRLHYYIKELHLVRQTLEG 123 (123)
Q Consensus 85 a~hLLEAs-LmG~~LFLal~IDRlHhYireLr~lrk~mE~ 123 (123)
=+||+.|- ..|..| +.|-=+|||.++.+..|+++++
T Consensus 331 LhHL~~~~E~l~~~L---ltiHNl~~~~~l~~~iR~aI~~ 367 (386)
T 3bld_A 331 IHHLIRAGEILGAML---MTEHNIAFYQQLMQKIRDSISE 367 (386)
T ss_dssp HHHHHHTTCHHHHHH---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhcccchhhHHH---HHHHHHHHHHHHHHHHHHHHHc
Confidence 36888764 455554 6789999999999999998653
No 11
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=21.33 E-value=27 Score=25.71 Aligned_cols=54 Identities=33% Similarity=0.483 Sum_probs=38.4
Q ss_pred CceeeeehhhHHHHHHHHHHHHH--HHHHhhhccCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045614 41 GPLVAKSVGATVLVVLCSAVYSA--MEIQRRAREGGAINPTEEVLMANLLLQASLMGFSLFLAMITDRLHYYI 111 (123)
Q Consensus 41 GP~~vKTva~TvlVvl~Ss~ySi--~kIq~R~~~~g~~nptDqVL~a~hLLEAsLmG~~LFLal~IDRlHhYi 111 (123)
=|++.+-...++..+.+|-+-++ .+++.|+.+.-. | + |.-=|.|+++||+==++
T Consensus 88 vPlI~~y~~~~m~~v~~sll~tv~Vl~~~~r~~~~~~--p-~--------------~~~k~~a~v~Dr~~l~~ 143 (164)
T 2ksr_A 88 VPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTHT--P-R--------------GGGGYVAMVIDRLFLWI 143 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHTSSCCCCS--S-C--------------CSSSSTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCC--C-C--------------chhhhHHHHHHHHHHHH
Confidence 47888888999999999888665 488888876432 3 1 11267888899875544
Done!