BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045616
(671 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabidopsis thaliana
GN=At5g41620 PE=1 SV=2
Length = 623
Score = 564 bits (1453), Expect = e-159, Method: Compositional matrix adjust.
Identities = 329/644 (51%), Positives = 420/644 (65%), Gaps = 73/644 (11%)
Query: 44 AHDSIIKENSHLSARKLAAALWEFHHYF--------------PISKMHRGVVVNGASDSK 89
AH S + + +S+RKLAAA WEFH Y +KMHRG NG + +
Sbjct: 35 AHISFVPNSIVVSSRKLAAAFWEFHQYHYKDEEDCSYSYLSSASAKMHRGP--NGFAGAS 92
Query: 90 MRRRHHRSQHQYKDKGLDLSHFLADPSPSSPEQPESASSLRRHIAQSLIQHHRAIERNNH 149
RR+ H K+ GLDLS FL DPSP QP+SA SLRR I Q LI+HH++I+RNNH
Sbjct: 93 SRRQRHGKAVAVKENGLDLSQFLRDPSPD--HQPDSAGSLRRQIGQMLIKHHQSIDRNNH 150
Query: 150 ALQPLSPASYGSSMEMAPYNPAAAVTPTSSLDFKGRVG-ESRYNLKTSTELLKVLNRIWS 208
ALQP+SPASYGSS+E+ YN AVTP+SSL+F+GR E YNLKTSTELLKVLNRIWS
Sbjct: 151 ALQPVSPASYGSSLEVTTYN--KAVTPSSSLEFRGRPSREPHYNLKTSTELLKVLNRIWS 208
Query: 209 LEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQD 268
LEEQH SN+SLIKALKTE+ H+RV+IKELLR QQADRHE+D ++KQ+AE+KL+ K+KE +
Sbjct: 209 LEEQHVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEVE 268
Query: 269 RIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEE 328
R+ +AVQSVR LEDERKLRKRSESLHRK+ARELSEVKS+LSN ++ELE +S K++E
Sbjct: 269 RMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKMMEL 328
Query: 329 LCDEFAIGIKDYDQELHALKQKS-DKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYG 387
LCDEFA GIK Y++E+H LK+K+ DK+W G+G D L+LHI+ESWLDERMQM+LE
Sbjct: 329 LCDEFAKGIKSYEEEIHGLKKKNLDKDWAGRGGGDQLVLHIAESWLDERMQMRLEGGDTL 388
Query: 388 LSEKNSIVDKLGFEIEAYLQAKRMSASKRTDNTIPRDRRNSLESVPLNEAVSAPQAVGDE 447
+ S++DKL EIE +LQ KR N IPR+RRNSLESVP N + P+ V E
Sbjct: 389 NGKNRSVLDKLEVEIETFLQEKR--------NEIPRNRRNSLESVPFNTLSAPPRDVDCE 440
Query: 448 EDSAGSDSNCFELDKPRNADLKLQRDEAVNDSVDEAMKHSQTKKNNVSRERTRDRTPTGL 507
EDS GSDSNCFEL KP DE K +Q K+ E+ ++P+
Sbjct: 441 EDSGGSDSNCFELKKP------------AESYGDETKKPNQHNKDGSIDEKP--KSPSSF 486
Query: 508 QVKFEEQMAWAMSCNGNKEPLMVNAEPGKDVEREPPEITPHKPENRGETEHSISGQNKE- 566
QV FE+QMAWA+S NG K+ + ++ + KPEN S NK+
Sbjct: 487 QVNFEDQMAWALSSNGKKKTTRAIEDEEEEEDV--------KPEN--------SNNNKKP 530
Query: 567 HDEVHGSNSNYMIDNLMRNH-ILLSEAGTIRPENDSGEASCSYPARRNQASPVRQWMSKL 625
+E +N N ++ ++R H LLSE I EASC++P+ R QASPVRQW+S+
Sbjct: 531 ENECATTNKNDVMGEMIRTHRRLLSETREI------DEASCNFPSSRRQASPVRQWISRT 584
Query: 626 TPPDIDISESSTKAPPVSKENTLKAKLLEARSKGQRSRFKVFRG 669
PD+ + S K+NTLK KL + +SR ++F+G
Sbjct: 585 VAPDL-LGPSEIAIAHGVKDNTLKTKL----ANSSKSRLRLFKG 623
>sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 OS=Caenorhabditis elegans
GN=ifa-2 PE=1 SV=1
Length = 581
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 18/156 (11%)
Query: 182 FKGRVGESRYNLKT--STELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLR 239
+GR G+S ++K E+ N + + H I+ L+ +LD R K +E R
Sbjct: 106 LQGRFGKSTGSVKVMYEMEITTATNVVKQTGKDHGETEKEIRKLQDQLDELRKKFEEAQR 165
Query: 240 DQQADRHEMDDLM--------------KQIA--EDKLIRKSKEQDRIHAAVQSVRDELED 283
+ DR ++DDL+ ++IA E+++ R KE R+ + +Q VR EL+
Sbjct: 166 GRAEDRLKIDDLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVRIELDQ 225
Query: 284 ERKLRKRSESLHRKLARELSEVKSTLSNALRELEGE 319
E LR +++ + + E+ +K L+EL+ +
Sbjct: 226 ETLLRIDNQNKVKTILEEIDFMKRGFETELKELQAQ 261
>sp|Q91Z79|LIPA3_RAT Liprin-alpha-3 OS=Rattus norvegicus GN=Ppfia3 PE=1 SV=2
Length = 1192
Score = 35.8 bits (81), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 110/250 (44%), Gaps = 44/250 (17%)
Query: 184 GRVGESRYNLKTSTELLKVLNR----IWSLEEQHASNVSLIKALKTEL----------DH 229
G VGES + + EL + L R + L E+ A + L+ EL +
Sbjct: 226 GPVGESS---RRTAELEEALERQRAEVCQLRERLAVLCRQMSQLEEELGTAHRELGKAEE 282
Query: 230 ARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRK 289
A K++ L++ A R +M++ + + E + + +E +H A + +EL + L +
Sbjct: 283 ANSKLQRDLKEALAQREDMEERITTL-EKRYLSAQREATSLHDANDKLENELASKESLYR 341
Query: 290 RSESLHRKLARELSEVKSTLSNALR------ELEGERRSRKL-----------LEELCDE 332
+SE R+LA L + K L L+ E+E + R EE +
Sbjct: 342 QSEEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQ 401
Query: 333 FAIGIKDYDQELHALKQK----SDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGL 388
+++ +QEL +Q+ D N D L+ SES +ER+Q+ L+E L
Sbjct: 402 LEAQLEEKNQELQRARQREKMNDDHNKRLSETVDKLL---SES--NERLQLHLKERMGAL 456
Query: 389 SEKNSIVDKL 398
EKNS+ +++
Sbjct: 457 EEKNSLSEEI 466
>sp|O75145|LIPA3_HUMAN Liprin-alpha-3 OS=Homo sapiens GN=PPFIA3 PE=1 SV=3
Length = 1194
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 27/192 (14%)
Query: 228 DHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKL 287
+ A K++ L++ A R +M++ + + E + + +E +H A + +EL + L
Sbjct: 281 EEANSKLQRDLKEALAQREDMEERITTL-EKRYLSAQREATSLHDANDKLENELASKESL 339
Query: 288 RKRSESLHRKLARELSEVKSTLSNALR------ELEGERRSRKL-----------LEELC 330
++SE R+LA L + K L L+ E+E + R EE
Sbjct: 340 YRQSEEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERL 399
Query: 331 DEFAIGIKDYDQELHALKQK----SDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQY 386
+ +++ +QEL +Q+ D N D L+ SES +ER+Q+ L+E
Sbjct: 400 RQLEAQLEEKNQELQRARQREKMNDDHNKRLSETVDKLL---SES--NERLQLHLKERMG 454
Query: 387 GLSEKNSIVDKL 398
L EKNS+ +++
Sbjct: 455 ALEEKNSLSEEI 466
>sp|P28739|KLPA_EMENI Kinesin-like protein klpA OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=klpA PE=2
SV=3
Length = 770
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 34/219 (15%)
Query: 187 GESRYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKEL---LRDQQA 243
G+ LK + E+ K +R+ LEE + LK ELD ++ ++ E L++ Q
Sbjct: 174 GQESSGLKDALEVYK--SRVGELEEAKSEQTEQNIRLKVELDVSKSRLAEAEDALKNAQR 231
Query: 244 DRHEM--DDLM-KQIAEDKLIR----------KSKEQDRIHAAVQSVRDELEDERKLRKR 290
D HE+ D+LM +Q AE + +R K++ + + + ELEDE+ R R
Sbjct: 232 D-HEIAIDELMSRQRAECESVRYESQKSLDALKAQHESELKELRRQFERELEDEKCARVR 290
Query: 291 S-ESLHRKLA--------------RELSEVKSTLSNALRELEGERRSRKLLEELCDEFAI 335
LH K A +EL+ + L + EL+ ER++ L + D A
Sbjct: 291 ELNQLHSKTALDAQLSQIELDKTIKELAATREDLQSLRTELDRERKNTNNLRQNLDTAAS 350
Query: 336 GIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLD 374
+ + ALK + + +G+ EQ +++ +D
Sbjct: 351 NSVTLESTISALKARIEFLESGREEQSEAFERLNQQMMD 389
>sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 OS=Caenorhabditis elegans
GN=ifa-3 PE=1 SV=1
Length = 581
Score = 33.5 bits (75), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 18/156 (11%)
Query: 182 FKGRVGESRYNLKT--STELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLR 239
+ R G+S ++K E+ N + + H I +K +LD R K +E +
Sbjct: 106 LQSRFGKSTGSVKIMYEMEITTATNVVKETGKDHEEAEKEIGKIKDQLDELRKKFEEAQK 165
Query: 240 DQQADRHEMDDLM--------------KQIA--EDKLIRKSKEQDRIHAAVQSVRDELED 283
+ DR ++D+L+ ++IA E+++ R KE R+ + +Q VR EL+
Sbjct: 166 GRAEDRLKIDELLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVRSELDQ 225
Query: 284 ERKLRKRSESLHRKLARELSEVKSTLSNALRELEGE 319
E LR +++ + E+ +K L++L+ +
Sbjct: 226 ETLLRIDNQNKVTTILEEIDFMKRGFETELKDLQAQ 261
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 249,876,812
Number of Sequences: 539616
Number of extensions: 10738151
Number of successful extensions: 36802
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 1398
Number of HSP's that attempted gapping in prelim test: 33086
Number of HSP's gapped (non-prelim): 3950
length of query: 671
length of database: 191,569,459
effective HSP length: 124
effective length of query: 547
effective length of database: 124,657,075
effective search space: 68187420025
effective search space used: 68187420025
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)