Query 045616
Match_columns 671
No_of_seqs 104 out of 116
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 03:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09726 Macoilin: Transmembra 97.3 0.0059 1.3E-07 71.0 16.7 175 210-410 452-628 (697)
2 PF07888 CALCOCO1: Calcium bin 96.4 0.38 8.2E-06 55.1 21.1 119 291-410 302-441 (546)
3 KOG0977 Nuclear envelope prote 96.3 0.23 4.9E-06 56.9 18.0 187 220-409 115-336 (546)
4 PF09726 Macoilin: Transmembra 96.2 0.1 2.2E-06 61.1 15.4 70 219-293 426-509 (697)
5 PF00038 Filament: Intermediat 96.2 0.24 5.2E-06 51.0 16.6 117 204-320 32-151 (312)
6 KOG0971 Microtubule-associated 95.9 0.92 2E-05 54.6 20.8 143 213-355 271-444 (1243)
7 KOG0161 Myosin class II heavy 95.4 1.1 2.4E-05 57.8 20.5 129 221-349 967-1118(1930)
8 TIGR00606 rad50 rad50. This fa 95.0 1.3 2.8E-05 55.0 19.3 184 218-410 758-968 (1311)
9 TIGR02169 SMC_prok_A chromosom 94.7 3.6 7.7E-05 48.9 21.1 27 15-41 5-31 (1164)
10 KOG0977 Nuclear envelope prote 94.4 6.2 0.00013 45.7 21.4 174 223-409 90-276 (546)
11 KOG0996 Structural maintenance 94.3 3.3 7.1E-05 51.3 19.6 175 231-406 333-513 (1293)
12 PF07888 CALCOCO1: Calcium bin 94.2 14 0.00031 42.8 24.6 135 209-350 295-432 (546)
13 KOG0612 Rho-associated, coiled 94.1 3.4 7.4E-05 51.3 19.4 147 223-378 466-620 (1317)
14 TIGR02169 SMC_prok_A chromosom 93.9 6.5 0.00014 46.8 21.1 27 223-249 292-318 (1164)
15 COG1196 Smc Chromosome segrega 93.5 6.9 0.00015 48.3 20.9 59 198-256 668-726 (1163)
16 TIGR02168 SMC_prok_B chromosom 92.9 13 0.00028 44.1 21.3 6 174-179 648-653 (1179)
17 KOG0163 Myosin class VI heavy 92.1 5.1 0.00011 48.1 16.3 99 187-288 840-940 (1259)
18 KOG0964 Structural maintenance 91.9 12 0.00025 46.2 19.2 162 221-403 254-442 (1200)
19 KOG0933 Structural maintenance 91.8 8.6 0.00019 47.3 18.1 131 217-355 740-870 (1174)
20 PF00038 Filament: Intermediat 91.7 18 0.0004 37.4 19.8 66 218-288 75-140 (312)
21 PRK02224 chromosome segregatio 91.3 12 0.00027 44.1 18.7 26 322-347 614-639 (880)
22 PHA02562 46 endonuclease subun 91.0 16 0.00036 40.6 18.4 139 195-345 148-302 (562)
23 COG1196 Smc Chromosome segrega 90.7 11 0.00024 46.6 18.1 37 368-404 462-499 (1163)
24 PRK09039 hypothetical protein; 90.6 10 0.00022 41.1 16.0 140 220-408 48-187 (343)
25 PRK02224 chromosome segregatio 90.4 34 0.00074 40.6 21.2 39 295-333 358-396 (880)
26 PF09727 CortBP2: Cortactin-bi 89.9 4.6 0.0001 41.1 11.8 166 195-380 11-179 (192)
27 PRK03918 chromosome segregatio 89.8 40 0.00088 39.7 21.1 20 193-212 141-160 (880)
28 PF05701 WEMBL: Weak chloropla 89.6 40 0.00088 38.5 20.2 42 211-252 123-164 (522)
29 KOG0161 Myosin class II heavy 89.5 29 0.00062 45.8 20.8 86 219-304 1246-1333(1930)
30 PF12718 Tropomyosin_1: Tropom 89.4 21 0.00046 34.4 17.3 93 220-317 2-104 (143)
31 PF12128 DUF3584: Protein of u 88.9 39 0.00084 42.3 21.0 54 218-271 635-688 (1201)
32 PF05701 WEMBL: Weak chloropla 88.7 41 0.00088 38.5 19.5 17 269-285 306-322 (522)
33 PF05615 THOC7: Tho complex su 88.6 13 0.00029 34.8 13.2 55 196-250 18-78 (139)
34 KOG0250 DNA repair protein RAD 88.3 15 0.00033 45.5 16.4 161 197-374 319-486 (1074)
35 PF07798 DUF1640: Protein of u 88.2 28 0.0006 34.2 17.7 66 286-353 84-156 (177)
36 PF06705 SF-assemblin: SF-asse 88.0 34 0.00074 35.1 17.1 67 266-334 93-160 (247)
37 PRK04778 septation ring format 87.8 18 0.00038 41.6 16.0 46 218-263 256-306 (569)
38 KOG0976 Rho/Rac1-interacting s 87.8 24 0.00053 42.9 17.2 49 266-314 285-344 (1265)
39 KOG0963 Transcription factor/C 87.6 8 0.00017 45.3 13.1 82 213-312 230-311 (629)
40 PF07798 DUF1640: Protein of u 86.8 23 0.0005 34.8 14.2 94 218-315 58-153 (177)
41 PF06705 SF-assemblin: SF-asse 86.8 33 0.00072 35.1 15.9 65 242-306 95-163 (247)
42 PF10174 Cast: RIM-binding pro 86.4 27 0.00058 42.3 16.9 175 218-408 128-316 (775)
43 PF09731 Mitofilin: Mitochondr 86.3 67 0.0015 36.6 20.4 44 196-239 225-272 (582)
44 KOG0933 Structural maintenance 85.8 1.1E+02 0.0023 38.5 22.0 192 219-413 685-905 (1174)
45 KOG0579 Ste20-like serine/thre 85.4 28 0.00061 41.9 15.9 83 315-408 1089-1171(1187)
46 PF08647 BRE1: BRE1 E3 ubiquit 85.3 25 0.00054 31.7 12.5 87 228-319 9-95 (96)
47 PRK11637 AmiB activator; Provi 85.1 61 0.0013 35.8 17.8 24 295-318 168-191 (428)
48 KOG0612 Rho-associated, coiled 83.9 51 0.0011 41.7 17.9 39 265-303 543-581 (1317)
49 PF10168 Nup88: Nuclear pore c 83.7 36 0.00077 40.8 16.2 31 283-317 633-663 (717)
50 COG0419 SbcC ATPase involved i 83.6 96 0.0021 37.6 20.0 83 319-405 352-436 (908)
51 COG4717 Uncharacterized conser 83.4 1.2E+02 0.0026 37.6 20.2 96 191-288 154-249 (984)
52 PF00901 Orbi_VP5: Orbivirus o 83.1 8.6 0.00019 44.1 10.5 84 283-366 102-185 (508)
53 KOG0996 Structural maintenance 83.0 66 0.0014 40.8 18.2 55 298-352 505-559 (1293)
54 KOG0994 Extracellular matrix g 82.7 1.3E+02 0.0029 38.5 20.3 95 306-409 1653-1747(1758)
55 KOG1029 Endocytic adaptor prot 82.3 33 0.00072 41.7 15.0 115 183-304 457-577 (1118)
56 PHA02562 46 endonuclease subun 80.9 1E+02 0.0022 34.5 22.0 32 220-251 215-246 (562)
57 KOG1853 LIS1-interacting prote 80.9 75 0.0016 34.4 15.7 107 213-338 40-147 (333)
58 TIGR00606 rad50 rad50. This fa 80.4 1.4E+02 0.003 37.9 20.4 34 222-255 892-925 (1311)
59 PRK04863 mukB cell division pr 80.2 1.2E+02 0.0026 39.5 19.8 23 308-330 408-430 (1486)
60 PF12128 DUF3584: Protein of u 79.9 1.8E+02 0.0038 36.8 22.0 65 221-285 631-698 (1201)
61 PF05010 TACC: Transforming ac 79.0 84 0.0018 32.5 17.5 25 298-322 81-105 (207)
62 KOG0995 Centromere-associated 78.9 75 0.0016 37.4 16.1 129 180-316 220-362 (581)
63 PF04111 APG6: Autophagy prote 78.3 5.4 0.00012 42.8 6.7 37 319-355 62-98 (314)
64 cd07652 F-BAR_Rgd1 The F-BAR ( 76.6 50 0.0011 34.0 12.8 104 270-403 91-196 (234)
65 KOG0994 Extracellular matrix g 76.6 1.7E+02 0.0036 37.7 18.6 28 325-352 1609-1636(1758)
66 KOG4787 Uncharacterized conser 76.2 31 0.00068 40.7 12.1 127 220-379 334-460 (852)
67 KOG0250 DNA repair protein RAD 75.9 2.1E+02 0.0045 36.2 19.4 15 28-42 41-55 (1074)
68 PRK00409 recombination and DNA 75.9 54 0.0012 39.5 14.5 51 19-69 287-356 (782)
69 KOG0239 Kinesin (KAR3 subfamil 75.7 54 0.0012 39.1 14.2 137 265-408 175-315 (670)
70 KOG0982 Centrosomal protein Nu 74.7 1.6E+02 0.0036 33.9 16.8 158 209-372 234-444 (502)
71 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.6 77 0.0017 29.8 16.9 98 220-317 5-104 (132)
72 PF13851 GAS: Growth-arrest sp 74.5 1E+02 0.0022 31.3 15.0 59 295-353 57-118 (201)
73 KOG4677 Golgi integral membran 74.0 60 0.0013 37.5 13.3 124 111-255 116-240 (554)
74 TIGR01069 mutS2 MutS2 family p 73.9 49 0.0011 39.8 13.5 57 224-280 524-580 (771)
75 KOG1103 Predicted coiled-coil 73.7 37 0.0008 38.1 11.5 165 217-410 106-293 (561)
76 COG4942 Membrane-bound metallo 72.8 1.8E+02 0.0039 33.3 18.0 26 564-589 342-367 (420)
77 PF01576 Myosin_tail_1: Myosin 72.8 1.2 2.5E-05 53.5 0.0 120 220-339 358-479 (859)
78 PF06428 Sec2p: GDP/GTP exchan 72.7 12 0.00025 34.6 6.4 72 279-350 1-73 (100)
79 KOG0964 Structural maintenance 72.1 1.8E+02 0.0039 36.7 17.3 94 308-404 308-422 (1200)
80 PF12325 TMF_TATA_bd: TATA ele 71.9 94 0.002 29.6 14.2 39 218-256 23-61 (120)
81 TIGR02977 phageshock_pspA phag 71.8 94 0.002 31.5 13.2 104 219-350 32-135 (219)
82 PRK04863 mukB cell division pr 71.7 2.6E+02 0.0056 36.6 19.6 27 15-42 10-36 (1486)
83 PF15236 CCDC66: Coiled-coil d 71.6 87 0.0019 31.3 12.5 66 251-329 63-128 (157)
84 PF05837 CENP-H: Centromere pr 71.3 67 0.0015 29.5 11.0 72 265-336 3-87 (106)
85 TIGR03185 DNA_S_dndD DNA sulfu 71.2 2.1E+02 0.0046 33.4 18.0 19 14-32 5-23 (650)
86 KOG4466 Component of histone d 70.8 83 0.0018 34.2 12.9 20 241-260 18-37 (291)
87 KOG1029 Endocytic adaptor prot 70.7 1.3E+02 0.0029 37.0 15.6 64 288-351 443-509 (1118)
88 TIGR02680 conserved hypothetic 70.2 1.4E+02 0.003 38.4 16.7 117 219-336 876-992 (1353)
89 TIGR01843 type_I_hlyD type I s 70.0 1.5E+02 0.0034 31.4 16.7 20 220-239 83-102 (423)
90 PF15035 Rootletin: Ciliary ro 69.8 1.3E+02 0.0028 30.4 15.0 91 218-320 16-122 (182)
91 KOG0163 Myosin class VI heavy 69.4 1.4E+02 0.0031 36.7 15.5 75 314-396 1001-1076(1259)
92 TIGR02231 conserved hypothetic 68.8 57 0.0012 36.9 12.0 69 219-289 72-148 (525)
93 PF10186 Atg14: UV radiation r 68.7 1.4E+02 0.003 30.3 17.3 19 268-286 73-91 (302)
94 PF14197 Cep57_CLD_2: Centroso 68.4 53 0.0012 28.4 9.1 61 218-283 5-65 (69)
95 KOG0995 Centromere-associated 68.0 2.1E+02 0.0045 34.0 16.2 45 301-345 426-470 (581)
96 PF13851 GAS: Growth-arrest sp 67.9 1.4E+02 0.0031 30.2 19.4 118 195-341 10-127 (201)
97 PRK10884 SH3 domain-containing 67.8 1.1E+02 0.0024 31.5 12.7 27 214-240 89-115 (206)
98 KOG0288 WD40 repeat protein Ti 66.8 1E+02 0.0022 35.3 13.1 34 358-391 106-139 (459)
99 KOG3915 Transcription regulato 66.3 48 0.001 38.3 10.6 58 221-297 510-567 (641)
100 PF09731 Mitofilin: Mitochondr 66.1 2.5E+02 0.0053 32.2 17.4 19 224-242 250-268 (582)
101 PF15070 GOLGA2L5: Putative go 65.3 1.9E+02 0.0042 34.3 15.6 128 221-348 83-215 (617)
102 KOG0976 Rho/Rac1-interacting s 65.1 85 0.0018 38.7 12.7 113 204-320 400-517 (1265)
103 KOG0971 Microtubule-associated 65.0 2.5E+02 0.0055 35.3 16.5 92 220-320 233-326 (1243)
104 PRK14154 heat shock protein Gr 64.7 1.3E+02 0.0028 31.3 12.5 57 213-269 47-103 (208)
105 PF09728 Taxilin: Myosin-like 64.6 1.3E+02 0.0028 32.6 13.1 74 313-401 63-136 (309)
106 KOG4674 Uncharacterized conser 64.1 3.6E+02 0.0077 36.2 18.6 58 215-272 1240-1300(1822)
107 PF11559 ADIP: Afadin- and alp 64.1 1.3E+02 0.0029 28.4 15.3 47 195-241 29-75 (151)
108 PF07926 TPR_MLP1_2: TPR/MLP1/ 64.1 46 0.00099 31.3 8.6 46 213-265 54-99 (132)
109 KOG4593 Mitotic checkpoint pro 63.5 2.3E+02 0.005 34.4 15.7 160 186-348 348-523 (716)
110 PF10473 CENP-F_leu_zip: Leuci 63.3 1.6E+02 0.0034 29.0 14.6 88 220-319 26-116 (140)
111 PF01576 Myosin_tail_1: Myosin 63.3 2.4 5.1E-05 51.0 0.0 139 202-347 677-818 (859)
112 KOG0980 Actin-binding protein 63.0 3.9E+02 0.0085 33.5 19.8 32 220-251 367-398 (980)
113 PF08317 Spc7: Spc7 kinetochor 62.8 2.2E+02 0.0048 30.6 14.9 74 269-345 181-261 (325)
114 smart00498 FH2 Formin Homology 62.2 1.8E+02 0.0039 32.3 14.1 116 218-333 310-431 (432)
115 COG1340 Uncharacterized archae 62.0 2.5E+02 0.0054 30.8 18.7 42 314-355 165-206 (294)
116 TIGR03185 DNA_S_dndD DNA sulfu 61.5 3.2E+02 0.007 32.0 18.3 26 230-255 389-414 (650)
117 PRK11637 AmiB activator; Provi 61.3 2.6E+02 0.0057 30.9 21.6 12 571-582 357-368 (428)
118 COG2433 Uncharacterized conser 61.1 1.1E+02 0.0024 36.4 12.6 26 261-286 470-495 (652)
119 PRK00409 recombination and DNA 60.8 2.8E+02 0.0061 33.7 16.3 15 247-261 517-531 (782)
120 KOG1850 Myosin-like coiled-coi 60.5 1.6E+02 0.0034 33.0 12.8 118 264-401 21-138 (391)
121 PF05700 BCAS2: Breast carcino 59.8 2.1E+02 0.0045 29.3 17.1 116 219-345 98-213 (221)
122 PRK09174 F0F1 ATP synthase sub 58.6 1.9E+02 0.0042 29.4 12.5 73 278-350 90-164 (204)
123 PF04108 APG17: Autophagy prot 58.0 3.1E+02 0.0067 30.7 15.1 33 307-339 346-378 (412)
124 PF00261 Tropomyosin: Tropomyo 56.5 2.4E+02 0.0052 28.9 15.6 140 209-355 83-224 (237)
125 PRK14140 heat shock protein Gr 56.4 2.4E+02 0.0052 28.9 13.3 56 214-269 33-88 (191)
126 COG3524 KpsE Capsule polysacch 55.9 16 0.00035 40.1 4.6 53 183-239 192-244 (372)
127 PF03245 Phage_lysis: Bacterio 55.9 75 0.0016 30.0 8.5 58 264-321 6-63 (125)
128 KOG4807 F-actin binding protei 55.4 1E+02 0.0022 35.2 10.7 88 207-314 374-463 (593)
129 TIGR01069 mutS2 MutS2 family p 54.9 3.8E+02 0.0083 32.6 16.0 15 246-260 511-525 (771)
130 PRK03918 chromosome segregatio 54.7 4.4E+02 0.0095 31.4 20.7 27 15-42 6-32 (880)
131 COG2433 Uncharacterized conser 54.5 2.5E+02 0.0053 33.8 13.8 48 3-50 110-157 (652)
132 PF05667 DUF812: Protein of un 54.5 2.6E+02 0.0056 33.2 14.2 16 447-462 506-523 (594)
133 KOG4403 Cell surface glycoprot 54.4 84 0.0018 36.2 9.9 26 294-319 303-328 (575)
134 KOG0999 Microtubule-associated 54.2 4.6E+02 0.01 31.5 19.6 31 380-410 230-260 (772)
135 PTZ00266 NIMA-related protein 53.9 1.5E+02 0.0033 37.2 12.8 11 59-69 228-238 (1021)
136 PF09727 CortBP2: Cortactin-bi 53.5 2.8E+02 0.006 28.7 12.6 73 234-321 115-190 (192)
137 PF06785 UPF0242: Uncharacteri 53.4 1.3E+02 0.0028 33.8 10.8 66 222-306 110-175 (401)
138 PRK09039 hypothetical protein; 53.3 2E+02 0.0043 31.5 12.4 36 204-239 66-102 (343)
139 COG4477 EzrA Negative regulato 53.1 3.2E+02 0.007 32.4 14.3 149 186-347 241-401 (570)
140 KOG4364 Chromatin assembly fac 53.1 2.9E+02 0.0063 33.6 14.1 42 282-323 296-337 (811)
141 PRK01156 chromosome segregatio 53.0 4.9E+02 0.011 31.4 22.4 31 219-249 470-500 (895)
142 PLN03188 kinesin-12 family pro 52.9 6.5E+02 0.014 32.9 17.8 37 210-246 1057-1093(1320)
143 PF06818 Fez1: Fez1; InterPro 52.9 1.6E+02 0.0034 30.7 10.8 143 220-376 12-172 (202)
144 PF09738 DUF2051: Double stran 52.8 82 0.0018 34.2 9.3 45 361-409 204-249 (302)
145 PRK14139 heat shock protein Gr 52.2 2.8E+02 0.006 28.4 12.5 63 219-281 33-95 (185)
146 PRK14143 heat shock protein Gr 52.1 2.9E+02 0.0063 29.2 12.8 70 219-316 68-137 (238)
147 KOG4661 Hsp27-ERE-TATA-binding 51.8 1.1E+02 0.0025 36.3 10.6 18 47-64 450-467 (940)
148 PF04849 HAP1_N: HAP1 N-termin 51.7 3.7E+02 0.008 29.7 15.4 187 209-410 88-303 (306)
149 cd07653 F-BAR_CIP4-like The F- 51.6 2.7E+02 0.0059 28.1 14.5 76 275-350 94-169 (251)
150 PF02185 HR1: Hr1 repeat; Int 51.5 48 0.001 27.9 5.9 58 292-350 4-62 (70)
151 KOG2072 Translation initiation 51.1 5.4E+02 0.012 32.2 16.1 30 254-283 715-744 (988)
152 TIGR01000 bacteriocin_acc bact 50.9 4E+02 0.0086 29.8 20.1 26 218-243 97-122 (457)
153 KOG0978 E3 ubiquitin ligase in 50.8 5.5E+02 0.012 31.4 18.1 125 222-353 397-528 (698)
154 PF11559 ADIP: Afadin- and alp 50.6 2.3E+02 0.0049 26.9 15.0 110 215-349 35-147 (151)
155 KOG0978 E3 ubiquitin ligase in 50.5 1.6E+02 0.0034 35.7 11.7 87 220-306 526-621 (698)
156 PRK14151 heat shock protein Gr 49.9 2.9E+02 0.0062 27.9 12.4 47 218-264 20-66 (176)
157 PRK14158 heat shock protein Gr 49.6 1.6E+02 0.0034 30.3 10.2 73 214-314 36-108 (194)
158 KOG4348 Adaptor protein CMS/SE 49.4 70 0.0015 36.9 8.3 56 224-301 568-623 (627)
159 PF09744 Jnk-SapK_ap_N: JNK_SA 49.3 2.5E+02 0.0054 27.9 11.3 69 197-267 10-78 (158)
160 KOG1103 Predicted coiled-coil 49.1 3.6E+02 0.0079 30.7 13.5 176 195-383 13-201 (561)
161 PRK10929 putative mechanosensi 48.9 6.9E+02 0.015 32.0 18.0 125 212-348 167-313 (1109)
162 PRK10246 exonuclease subunit S 48.9 6.4E+02 0.014 31.6 19.8 15 150-164 499-513 (1047)
163 PF06785 UPF0242: Uncharacteri 48.9 4.5E+02 0.0096 29.8 16.0 106 277-402 90-203 (401)
164 TIGR02680 conserved hypothetic 48.6 5.5E+02 0.012 33.2 16.7 24 619-644 1315-1338(1353)
165 PF05911 DUF869: Plant protein 48.5 5.1E+02 0.011 31.9 15.7 128 216-350 587-716 (769)
166 KOG0993 Rab5 GTPase effector R 48.4 2.6E+02 0.0057 32.3 12.4 127 220-352 40-172 (542)
167 PF15254 CCDC14: Coiled-coil d 48.4 5.4E+02 0.012 31.9 15.5 75 267-347 382-474 (861)
168 PF05667 DUF812: Protein of un 48.3 5.4E+02 0.012 30.6 17.1 44 219-262 329-372 (594)
169 PF08317 Spc7: Spc7 kinetochor 47.6 3.9E+02 0.0085 28.8 16.2 21 266-286 210-230 (325)
170 PF04156 IncA: IncA protein; 47.3 2.8E+02 0.006 27.0 15.2 20 223-242 79-98 (191)
171 PRK14146 heat shock protein Gr 46.9 3.5E+02 0.0075 28.2 12.3 64 219-282 55-118 (215)
172 PRK14145 heat shock protein Gr 46.6 3.5E+02 0.0076 27.9 12.3 66 217-282 44-109 (196)
173 PTZ00121 MAEBL; Provisional 45.7 9.1E+02 0.02 32.5 17.7 163 228-404 1112-1274(2084)
174 PRK00106 hypothetical protein; 45.6 5.7E+02 0.012 30.1 15.7 9 230-238 40-48 (535)
175 COG1842 PspA Phage shock prote 45.1 3.9E+02 0.0084 28.0 14.8 33 284-316 72-104 (225)
176 PF08614 ATG16: Autophagy prot 44.7 3.3E+02 0.0072 27.1 12.3 84 218-306 102-185 (194)
177 PF05837 CENP-H: Centromere pr 44.7 2.4E+02 0.0052 25.9 9.7 70 222-291 7-77 (106)
178 KOG0804 Cytoplasmic Zn-finger 44.5 5.1E+02 0.011 30.2 14.0 64 225-302 347-412 (493)
179 PRK14156 heat shock protein Gr 44.4 3.5E+02 0.0075 27.5 11.6 48 222-269 31-78 (177)
180 PRK00106 hypothetical protein; 44.3 6E+02 0.013 30.0 18.7 13 228-240 49-61 (535)
181 PF08397 IMD: IRSp53/MIM homol 44.1 3.6E+02 0.0078 27.3 14.8 35 298-332 150-186 (219)
182 PF15254 CCDC14: Coiled-coil d 44.0 6.5E+02 0.014 31.3 15.3 56 286-348 487-542 (861)
183 PF14712 Snapin_Pallidin: Snap 43.7 2.2E+02 0.0048 24.8 10.6 76 217-299 6-81 (92)
184 KOG4302 Microtubule-associated 43.1 6.1E+02 0.013 30.8 14.9 143 194-336 14-200 (660)
185 PF11932 DUF3450: Protein of u 42.6 4E+02 0.0087 27.5 13.0 99 231-338 20-119 (251)
186 PF05103 DivIVA: DivIVA protei 42.6 18 0.0004 32.8 2.2 14 246-259 21-34 (131)
187 PF10454 DUF2458: Protein of u 42.5 3.4E+02 0.0073 26.8 10.9 14 231-244 26-39 (150)
188 TIGR03752 conj_TIGR03752 integ 42.4 3E+02 0.0064 32.1 11.9 69 208-286 51-119 (472)
189 cd07673 F-BAR_FCHO2 The F-BAR 42.3 4.4E+02 0.0095 27.8 17.6 50 204-256 4-53 (269)
190 PF14643 DUF4455: Domain of un 42.3 4.5E+02 0.0097 29.9 13.3 106 218-339 11-119 (473)
191 PRK04778 septation ring format 42.1 6.1E+02 0.013 29.5 17.4 60 263-322 280-339 (569)
192 cd07625 BAR_Vps17p The Bin/Amp 42.1 4.4E+02 0.0095 27.7 14.6 53 252-304 140-193 (230)
193 PF14915 CCDC144C: CCDC144C pr 41.1 5.4E+02 0.012 28.5 13.5 104 218-338 179-288 (305)
194 PRK14162 heat shock protein Gr 41.0 4.2E+02 0.0091 27.3 12.7 47 218-264 39-85 (194)
195 KOG1265 Phospholipase C [Lipid 40.6 6.5E+02 0.014 31.9 14.7 115 289-409 1059-1180(1189)
196 PF14739 DUF4472: Domain of un 40.5 2.1E+02 0.0047 27.1 8.8 95 193-323 6-100 (108)
197 PF07083 DUF1351: Protein of u 40.4 2.7E+02 0.0059 28.5 10.4 58 265-322 42-107 (215)
198 KOG0980 Actin-binding protein 40.3 8.7E+02 0.019 30.7 17.9 37 276-312 449-485 (980)
199 PF13514 AAA_27: AAA domain 40.3 8.5E+02 0.018 30.6 19.1 17 218-234 784-800 (1111)
200 PRK14147 heat shock protein Gr 39.5 1.7E+02 0.0037 29.3 8.6 66 220-313 20-85 (172)
201 PRK14153 heat shock protein Gr 39.4 4.1E+02 0.0088 27.4 11.3 67 220-314 35-101 (194)
202 PF05010 TACC: Transforming ac 39.3 4.6E+02 0.01 27.2 16.9 27 312-338 180-206 (207)
203 PTZ00266 NIMA-related protein 38.8 3.6E+02 0.0078 34.1 12.7 7 202-208 421-427 (1021)
204 PF13863 DUF4200: Domain of un 38.4 3.1E+02 0.0067 24.9 16.4 50 281-330 69-118 (126)
205 PF09763 Sec3_C: Exocyst compl 38.3 2.1E+02 0.0045 33.8 10.3 94 291-408 3-97 (701)
206 PRK13454 F0F1 ATP synthase sub 38.3 4.1E+02 0.0089 26.4 12.4 28 286-313 76-103 (181)
207 PF14523 Syntaxin_2: Syntaxin- 38.2 2.7E+02 0.0059 24.3 9.6 66 231-319 32-97 (102)
208 PF09304 Cortex-I_coil: Cortex 38.1 3.7E+02 0.0079 25.7 14.4 71 218-293 16-86 (107)
209 KOG3433 Protein involved in me 37.9 5E+02 0.011 27.2 12.2 122 227-355 7-143 (203)
210 PF14073 Cep57_CLD: Centrosome 37.9 4.7E+02 0.01 26.9 15.7 150 219-386 2-164 (178)
211 KOG4661 Hsp27-ERE-TATA-binding 37.6 5E+02 0.011 31.4 12.8 32 269-302 638-669 (940)
212 cd07658 F-BAR_NOSTRIN The F-BA 37.5 4.9E+02 0.011 27.0 15.1 7 327-333 195-201 (239)
213 KOG4572 Predicted DNA-binding 37.4 4.6E+02 0.0099 33.0 12.7 44 363-410 1066-1109(1424)
214 PF04111 APG6: Autophagy prote 37.0 5.8E+02 0.013 27.7 13.6 22 385-406 165-186 (314)
215 KOG4674 Uncharacterized conser 36.9 7.9E+02 0.017 33.3 15.5 70 274-343 1027-1103(1822)
216 PF14942 Muted: Organelle biog 36.8 4.2E+02 0.0091 26.1 12.5 54 245-298 20-75 (145)
217 PF13935 Ead_Ea22: Ead/Ea22-li 36.5 3.8E+02 0.0082 25.7 10.1 25 216-240 65-89 (139)
218 PF09798 LCD1: DNA damage chec 35.8 93 0.002 37.2 7.0 49 231-287 3-51 (654)
219 PF14932 HAUS-augmin3: HAUS au 35.8 4.1E+02 0.009 27.8 11.0 84 265-351 68-151 (256)
220 PRK12704 phosphodiesterase; Pr 35.4 7.8E+02 0.017 28.7 17.9 15 284-298 88-102 (520)
221 PF09636 XkdW: XkdW protein; 35.2 13 0.00027 35.2 0.0 39 273-311 66-104 (108)
222 PF14915 CCDC144C: CCDC144C pr 35.1 6.7E+02 0.014 27.8 18.6 93 220-319 8-110 (305)
223 KOG2008 BTK-associated SH3-dom 34.7 7.2E+02 0.016 28.1 17.6 62 200-265 9-75 (426)
224 KOG3915 Transcription regulato 34.5 4.2E+02 0.0091 31.2 11.4 47 275-328 531-577 (641)
225 KOG0249 LAR-interacting protei 34.5 1E+03 0.022 29.7 16.4 66 310-382 219-284 (916)
226 PF11855 DUF3375: Protein of u 34.4 5.9E+02 0.013 29.2 12.8 109 188-304 93-214 (478)
227 PF07200 Mod_r: Modifier of ru 34.3 4E+02 0.0088 25.1 14.8 128 195-350 5-132 (150)
228 cd07598 BAR_FAM92 The Bin/Amph 34.2 5.4E+02 0.012 26.5 17.3 121 196-331 41-164 (211)
229 PF13935 Ead_Ea22: Ead/Ea22-li 34.1 3.1E+02 0.0067 26.2 9.1 67 273-339 68-137 (139)
230 PRK01156 chromosome segregatio 33.7 9.3E+02 0.02 29.1 19.6 16 195-210 147-162 (895)
231 TIGR01843 type_I_hlyD type I s 33.4 6.2E+02 0.013 26.9 15.7 18 222-239 148-165 (423)
232 PF06428 Sec2p: GDP/GTP exchan 33.1 2.4E+02 0.0053 26.2 7.9 62 226-305 2-63 (100)
233 PF14197 Cep57_CLD_2: Centroso 33.1 2.2E+02 0.0047 24.8 7.1 15 336-350 48-62 (69)
234 TIGR00634 recN DNA repair prot 32.8 8.3E+02 0.018 28.3 18.4 63 191-257 138-200 (563)
235 PF00901 Orbi_VP5: Orbivirus o 32.3 7.8E+02 0.017 29.1 13.2 18 229-246 88-105 (508)
236 PF01025 GrpE: GrpE; InterPro 32.3 1E+02 0.0022 29.3 5.6 21 294-314 59-79 (165)
237 cd07673 F-BAR_FCHO2 The F-BAR 32.2 6.3E+02 0.014 26.7 16.8 43 287-333 155-198 (269)
238 KOG2129 Uncharacterized conser 32.1 2.8E+02 0.006 32.2 9.5 18 123-141 42-59 (552)
239 PF13801 Metal_resist: Heavy-m 31.9 1.5E+02 0.0033 25.4 6.2 64 219-286 60-123 (125)
240 PF05700 BCAS2: Breast carcino 31.5 5.5E+02 0.012 26.3 10.9 38 218-255 143-180 (221)
241 PLN02372 violaxanthin de-epoxi 31.5 4.6E+02 0.0099 30.4 11.0 55 276-332 383-440 (455)
242 TIGR01541 tape_meas_lam_C phag 31.4 7.5E+02 0.016 27.3 14.2 13 388-400 135-147 (332)
243 COG3074 Uncharacterized protei 31.2 2.6E+02 0.0057 25.1 7.3 57 215-275 15-74 (79)
244 PRK10698 phage shock protein P 30.8 5.3E+02 0.011 26.6 10.7 93 270-405 29-132 (222)
245 PRK14155 heat shock protein Gr 30.4 6.4E+02 0.014 26.2 12.2 68 221-316 16-83 (208)
246 PF13514 AAA_27: AAA domain 30.3 1.2E+03 0.026 29.3 21.5 32 224-255 617-648 (1111)
247 PF06005 DUF904: Protein of un 30.2 2.3E+02 0.0049 24.9 6.8 60 210-277 10-69 (72)
248 PF11262 Tho2: Transcription f 30.2 1.5E+02 0.0032 31.8 6.8 52 220-271 48-100 (298)
249 PF09036 Bcr-Abl_Oligo: Bcr-Ab 30.2 1.5E+02 0.0033 26.7 5.8 53 209-261 15-69 (79)
250 PRK14160 heat shock protein Gr 30.0 6.6E+02 0.014 26.3 12.8 41 221-261 64-104 (211)
251 PF05615 THOC7: Tho complex su 29.9 2.8E+02 0.006 26.1 7.9 58 282-340 70-127 (139)
252 PF00769 ERM: Ezrin/radixin/mo 29.9 6.7E+02 0.015 26.3 14.5 164 243-465 5-168 (246)
253 PRK13428 F0F1 ATP synthase sub 29.8 8.7E+02 0.019 27.6 14.9 136 259-405 20-157 (445)
254 COG1579 Zn-ribbon protein, pos 29.4 7.2E+02 0.016 26.5 16.5 34 218-251 31-64 (239)
255 COG0419 SbcC ATPase involved i 29.4 1.1E+03 0.025 28.8 21.2 18 26-43 16-35 (908)
256 PF10473 CENP-F_leu_zip: Leuci 29.4 5.6E+02 0.012 25.2 14.2 113 219-350 11-123 (140)
257 PRK14148 heat shock protein Gr 29.3 6.5E+02 0.014 25.9 12.7 44 218-261 40-83 (195)
258 PF09730 BicD: Microtubule-ass 29.2 1.2E+03 0.025 28.8 18.5 210 217-476 33-253 (717)
259 PRK13454 F0F1 ATP synthase sub 29.1 5.8E+02 0.013 25.3 16.1 82 225-312 58-139 (181)
260 KOG2070 Guanine nucleotide exc 29.0 7.3E+02 0.016 29.6 12.2 186 105-298 412-656 (661)
261 KOG0239 Kinesin (KAR3 subfamil 28.9 1.1E+03 0.024 28.5 15.3 100 217-316 181-285 (670)
262 KOG0288 WD40 repeat protein Ti 28.9 9.8E+02 0.021 27.9 14.9 32 300-331 100-131 (459)
263 COG1842 PspA Phage shock prote 28.9 7E+02 0.015 26.2 14.4 110 220-350 33-142 (225)
264 PRK10884 SH3 domain-containing 28.5 4.8E+02 0.01 26.9 9.9 29 291-319 137-165 (206)
265 smart00806 AIP3 Actin interact 28.3 9.8E+02 0.021 27.7 14.3 129 239-410 257-407 (426)
266 PRK14163 heat shock protein Gr 28.3 7.2E+02 0.016 26.1 12.3 62 221-282 43-104 (214)
267 PF09787 Golgin_A5: Golgin sub 28.2 9.7E+02 0.021 27.6 16.7 36 249-284 158-193 (511)
268 COG1322 Predicted nuclease of 28.2 9.8E+02 0.021 27.7 14.8 39 222-260 81-119 (448)
269 PF10174 Cast: RIM-binding pro 28.2 1.2E+03 0.027 28.8 21.4 73 180-252 283-356 (775)
270 PF04778 LMP: LMP repeated reg 27.8 5.1E+02 0.011 26.3 9.5 76 224-300 71-150 (157)
271 KOG1656 Protein involved in gl 27.8 7.6E+02 0.016 26.2 13.7 42 246-288 35-78 (221)
272 KOG2129 Uncharacterized conser 27.6 4E+02 0.0087 31.0 9.8 22 281-302 284-305 (552)
273 PF03962 Mnd1: Mnd1 family; I 27.5 6.6E+02 0.014 25.4 11.7 9 195-203 31-39 (188)
274 TIGR01000 bacteriocin_acc bact 27.4 9.1E+02 0.02 27.0 17.6 11 379-389 298-308 (457)
275 cd07625 BAR_Vps17p The Bin/Amp 27.2 4.7E+02 0.01 27.5 9.7 15 315-329 213-227 (230)
276 PF15035 Rootletin: Ciliary ro 27.1 6.7E+02 0.015 25.4 11.9 68 197-266 60-129 (182)
277 cd07686 F-BAR_Fer The F-BAR (F 27.0 3.2E+02 0.0069 28.8 8.5 36 282-317 101-137 (234)
278 PF12777 MT: Microtubule-bindi 26.8 8.5E+02 0.018 26.5 12.4 89 218-321 15-103 (344)
279 TIGR01005 eps_transp_fam exopo 26.7 1.1E+03 0.025 27.9 16.9 65 285-352 319-386 (754)
280 COG4942 Membrane-bound metallo 26.7 1E+03 0.022 27.4 16.9 30 290-319 147-176 (420)
281 KOG4787 Uncharacterized conser 26.4 6.8E+02 0.015 30.4 11.6 57 279-352 504-561 (852)
282 PF04977 DivIC: Septum formati 26.4 2.4E+02 0.0052 23.3 6.2 35 217-251 16-50 (80)
283 COG5245 DYN1 Dynein, heavy cha 26.2 2.2E+02 0.0047 38.3 8.1 120 289-410 2162-2345(3164)
284 KOG4657 Uncharacterized conser 26.1 8.5E+02 0.018 26.2 14.4 40 266-312 87-126 (246)
285 PF05622 HOOK: HOOK protein; 26.0 30 0.00064 40.8 1.0 57 295-351 234-290 (713)
286 PRK14144 heat shock protein Gr 25.9 4.7E+02 0.01 27.1 9.3 21 294-314 93-113 (199)
287 KOG0979 Structural maintenance 25.8 1.5E+03 0.033 29.1 16.1 183 221-404 191-392 (1072)
288 PRK04654 sec-independent trans 25.7 3.2E+02 0.0069 28.8 8.1 14 273-286 42-55 (214)
289 PF05557 MAD: Mitotic checkpoi 25.3 24 0.00051 41.6 0.0 179 220-406 173-384 (722)
290 PF14931 IFT20: Intraflagellar 25.3 1.3E+02 0.0029 28.6 4.9 82 324-408 23-109 (120)
291 smart00787 Spc7 Spc7 kinetocho 25.3 9.2E+02 0.02 26.4 16.3 53 269-324 176-228 (312)
292 cd07651 F-BAR_PombeCdc15_like 25.0 7.4E+02 0.016 25.2 17.2 46 269-321 57-103 (236)
293 PLN03188 kinesin-12 family pro 25.0 8.7E+02 0.019 31.8 12.8 82 271-355 1078-1175(1320)
294 KOG0999 Microtubule-associated 24.9 1.3E+03 0.028 28.0 15.1 35 302-336 109-143 (772)
295 PRK11281 hypothetical protein; 24.4 9.2E+02 0.02 31.0 13.0 122 217-350 191-335 (1113)
296 PF15294 Leu_zip: Leucine zipp 24.3 9.6E+02 0.021 26.2 15.3 76 272-352 132-207 (278)
297 PF15619 Lebercilin: Ciliary p 24.0 7.9E+02 0.017 25.1 14.7 61 220-283 70-136 (194)
298 PF09787 Golgin_A5: Golgin sub 24.0 1.1E+03 0.025 27.0 20.4 25 383-407 306-330 (511)
299 PF01991 vATP-synt_E: ATP synt 23.8 6.6E+02 0.014 24.1 13.1 14 228-241 4-17 (198)
300 KOG4673 Transcription factor T 23.6 1.5E+03 0.033 28.2 15.8 162 223-405 344-507 (961)
301 PRK07352 F0F1 ATP synthase sub 23.5 7E+02 0.015 24.3 15.5 37 227-263 48-84 (174)
302 COG1340 Uncharacterized archae 23.4 1E+03 0.022 26.3 16.4 38 218-255 165-202 (294)
303 PRK14141 heat shock protein Gr 23.4 8.6E+02 0.019 25.4 11.9 60 223-282 36-95 (209)
304 PRK14147 heat shock protein Gr 23.3 4.1E+02 0.0088 26.7 8.1 36 293-337 50-85 (172)
305 KOG0247 Kinesin-like protein [ 23.2 8.7E+02 0.019 30.1 11.9 94 254-351 497-590 (809)
306 TIGR01005 eps_transp_fam exopo 23.2 1.3E+03 0.028 27.4 14.9 40 218-257 288-327 (754)
307 PRK14474 F0F1 ATP synthase sub 23.2 8.9E+02 0.019 25.4 15.4 127 199-333 26-157 (250)
308 COG4913 Uncharacterized protei 23.1 1.5E+03 0.032 28.6 13.6 47 218-264 691-737 (1104)
309 PF15290 Syntaphilin: Golgi-lo 23.0 1.1E+03 0.023 26.3 11.7 49 220-275 70-118 (305)
310 PF11932 DUF3450: Protein of u 23.0 8.5E+02 0.018 25.1 14.8 28 228-255 38-65 (251)
311 KOG1899 LAR transmembrane tyro 23.0 1.5E+03 0.032 28.0 15.7 34 281-314 162-195 (861)
312 PF13747 DUF4164: Domain of un 22.9 5.7E+02 0.012 23.1 10.3 49 297-345 36-84 (89)
313 PF02841 GBP_C: Guanylate-bind 22.7 9.3E+02 0.02 25.5 12.3 15 272-286 243-257 (297)
314 PF03938 OmpH: Outer membrane 22.7 6.4E+02 0.014 23.6 12.6 36 247-282 58-93 (158)
315 PF13863 DUF4200: Domain of un 22.7 5.8E+02 0.013 23.1 13.0 51 297-347 50-100 (126)
316 PF15070 GOLGA2L5: Putative go 22.6 1.4E+03 0.03 27.5 19.2 42 198-241 18-59 (617)
317 PF02050 FliJ: Flagellar FliJ 22.5 4.9E+02 0.011 22.2 13.2 29 221-249 8-36 (123)
318 PF08703 PLC-beta_C: PLC-beta 22.5 8.7E+02 0.019 25.1 11.4 114 289-410 37-173 (185)
319 PF03915 AIP3: Actin interacti 22.4 7E+02 0.015 28.6 10.6 57 218-274 227-288 (424)
320 TIGR01010 BexC_CtrB_KpsE polys 22.4 5.2E+02 0.011 27.8 9.3 96 204-318 200-303 (362)
321 PF01865 PhoU_div: Protein of 22.3 6.4E+02 0.014 24.8 9.3 124 226-355 41-172 (214)
322 KOG3612 PHD Zn-finger protein 22.3 4.8E+02 0.01 31.1 9.4 61 285-350 463-527 (588)
323 cd07605 I-BAR_IMD Inverse (I)- 22.1 9.2E+02 0.02 25.2 17.8 135 187-338 54-203 (223)
324 PF10168 Nup88: Nuclear pore c 22.0 1.5E+03 0.032 27.6 20.3 21 32-52 298-318 (717)
325 PRK01919 tatB sec-independent 21.9 4E+02 0.0086 27.2 7.7 17 269-285 38-54 (169)
326 KOG0993 Rab5 GTPase effector R 21.8 1.3E+03 0.029 27.0 13.7 126 218-350 345-491 (542)
327 cd04779 HTH_MerR-like_sg4 Heli 21.8 2.1E+02 0.0046 27.4 5.6 47 185-241 51-97 (134)
328 cd07602 BAR_RhoGAP_OPHN1-like 21.8 9.2E+02 0.02 25.1 12.0 25 220-244 4-28 (207)
329 PF01442 Apolipoprotein: Apoli 21.6 6.5E+02 0.014 23.3 19.0 10 297-306 130-139 (202)
330 PF03962 Mnd1: Mnd1 family; I 21.6 8.5E+02 0.018 24.6 12.0 12 248-259 85-96 (188)
331 PRK10361 DNA recombination pro 21.6 1.3E+03 0.029 26.9 13.9 92 220-314 83-179 (475)
332 PRK15178 Vi polysaccharide exp 21.1 4.2E+02 0.0092 30.4 8.6 49 210-258 278-333 (434)
333 cd07675 F-BAR_FNBP1L The F-BAR 21.1 1E+03 0.022 25.4 10.9 40 275-317 98-137 (252)
334 PF13870 DUF4201: Domain of un 21.1 7.8E+02 0.017 24.0 17.3 81 259-339 57-137 (177)
335 CHL00019 atpF ATP synthase CF0 21.0 8.1E+02 0.017 24.2 16.3 8 323-330 166-173 (184)
336 KOG2002 TPR-containing nuclear 21.0 1.5E+03 0.033 28.9 13.5 73 194-277 713-785 (1018)
337 PRK09174 F0F1 ATP synthase sub 20.9 9.1E+02 0.02 24.7 18.0 97 150-284 43-139 (204)
338 TIGR01554 major_cap_HK97 phage 20.8 4.2E+02 0.009 28.7 8.2 17 236-252 3-19 (378)
339 PF05852 DUF848: Gammaherpesvi 20.7 5.3E+02 0.012 25.7 8.1 37 261-297 50-86 (146)
340 smart00502 BBC B-Box C-termina 20.6 5.7E+02 0.012 22.2 14.9 21 265-285 39-59 (127)
341 KOG1265 Phospholipase C [Lipid 20.5 1.5E+03 0.033 29.0 13.3 86 237-332 1080-1165(1189)
342 PF07106 TBPIP: Tat binding pr 20.4 7.9E+02 0.017 23.8 10.9 45 216-260 70-114 (169)
343 PF05529 Bap31: B-cell recepto 20.3 6.8E+02 0.015 24.7 9.0 24 232-255 118-141 (192)
344 PF10147 CR6_interact: Growth 20.2 9.6E+02 0.021 25.4 10.3 76 239-321 117-192 (217)
345 PF04871 Uso1_p115_C: Uso1 / p 20.1 7.9E+02 0.017 23.7 10.0 11 360-370 85-95 (136)
No 1
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.33 E-value=0.0059 Score=70.97 Aligned_cols=175 Identities=23% Similarity=0.329 Sum_probs=104.2
Q ss_pred cccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 045616 210 EEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRK 289 (671)
Q Consensus 210 eeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rr 289 (671)
.......=+-|..|+.|-++.+.++.+|.+.++.++..|..|=|+|++|+..+- ++-.+|..|||.|+
T Consensus 452 ~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~------------~lEkQL~eErk~r~ 519 (697)
T PF09726_consen 452 TNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRA------------SLEKQLQEERKARK 519 (697)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHh
Confidence 333334446688899999999999999999999999999999999999975433 46678999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhh--ccCCccchhhHH
Q 045616 290 RSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNW--TGKGEQDHLILH 367 (671)
Q Consensus 290 r~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~--~ee~eeER~MLq 367 (671)
..|.- -++.++.+.+.-.- -=|.=|..+.=||.-|+.|-+++..-++.+..|..+....+ +.|.+.|-+||.
T Consensus 520 ~ee~~---aar~~~~~~~~r~e---~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~ 593 (697)
T PF09726_consen 520 EEEEK---AARALAQAQATRQE---CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLM 593 (697)
T ss_pred HHHHh---hhhccccchhccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 87763 23221111100000 00111333344555566666666555555555555432111 112345556555
Q ss_pred hhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHhhh
Q 045616 368 ISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKR 410 (671)
Q Consensus 368 mAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k~ 410 (671)
.|=.=. | |--..||...++=.++.-||=.-|...+
T Consensus 594 ~aL~am----q----dk~~~LE~sLsaEtriKldLfsaLg~ak 628 (697)
T PF09726_consen 594 SALSAM----Q----DKNQHLENSLSAETRIKLDLFSALGDAK 628 (697)
T ss_pred HHHHHH----H----HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 443211 1 1123356666666777777777776543
No 2
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.45 E-value=0.38 Score=55.11 Aligned_cols=119 Identities=24% Similarity=0.301 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhhccc----cHHHHHHHhhhchhhhccCCccchhh
Q 045616 291 SESLHRKLARELSEVKSTLSNALRELEGERRSRKLLE-ELCDEFAIGIKD----YDQELHALKQKSDKNWTGKGEQDHLI 365 (671)
Q Consensus 291 ~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE-~vCDELAkgI~e----dkaEVe~LKres~k~~~ee~eeER~M 365 (671)
++.-.-.|++||+++.+.=.+.+.||-.-|-.-.=|. .+|| .+-.+++ ...|...|.+..+..+.+=.+-.+++
T Consensus 302 Sqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad-~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el 380 (546)
T PF07888_consen 302 SQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLAD-ASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSREL 380 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444556777777776666666666665553222221 2222 2222333 33344444443322221111455666
Q ss_pred HHhhhhhhhhhhh----------------hhHHHhhhcccchhhHHHHhhHHHHHHHHhhh
Q 045616 366 LHISESWLDERMQ----------------MKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKR 410 (671)
Q Consensus 366 LqmAEvWREERVQ----------------MKL~eAk~~leeK~s~vdkL~~elEaFL~~k~ 410 (671)
.++++...|||++ +.|+|++-.|.|+.+.+-.++-|=|-+...+.
T Consensus 381 ~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQ 441 (546)
T PF07888_consen 381 QMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQ 441 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777766677764 56666666677777777767767666666655
No 3
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.25 E-value=0.23 Score=56.86 Aligned_cols=187 Identities=23% Similarity=0.335 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh----------------HHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQI----------------AEDKLIRKSKEQDRIHAAVQSVRDELED 283 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql----------------aEEK~awKsKE~eki~aai~slk~ELe~ 283 (671)
|..|+.|++.++.+..+..++....+.+++..+..+ -||....=.+|-.+|...|..++.+|++
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566666666666666666666666666555332222 2344445556788888888888888888
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCC
Q 045616 284 ERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSR----KLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKG 359 (671)
Q Consensus 284 ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaR----ellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~ 359 (671)
|.-+|..++.-..=|-.||.=++.-.+..+.|+-.- .+| ..=+..=+||+.-|.|.+++-+...+...++++..
T Consensus 195 Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~- 272 (546)
T KOG0977|consen 195 ETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESW- 272 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-
Confidence 888888888888888888887777776666554322 122 23356677888888888888777777665555221
Q ss_pred ccchhhHHh----------hhhhhhhhhhhhHH----Hhhh-cccchhhHHHHhhHHHHHHHHhh
Q 045616 360 EQDHLILHI----------SESWLDERMQMKLE----EAQY-GLSEKNSIVDKLGFEIEAYLQAK 409 (671)
Q Consensus 360 eeER~MLqm----------AEvWREERVQMKL~----eAk~-~leeK~s~vdkL~~elEaFL~~k 409 (671)
-.+++=.| ..--|||.+.|+-. -||+ .||..|+.+++...+|+-=|..-
T Consensus 273 -Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~ 336 (546)
T KOG0977|consen 273 -YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDED 336 (546)
T ss_pred -HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhh
Confidence 12222111 22356776666532 2333 36778888888888887766654
No 4
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.23 E-value=0.1 Score=61.12 Aligned_cols=70 Identities=23% Similarity=0.356 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hhhh-------hhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 045616 219 LIKALKTELDHARVKIKELLRD-------QQAD-------RHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDE 284 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E-------~~s~-------~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~E 284 (671)
=|+.|++||.++|..=+||-.. .+.. +++.|.|..++.+= .+.+++=+..++.|-..|.+|
T Consensus 426 dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L-----~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 426 DVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL-----VQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4677888887777655555444 2222 23333333333222 222223335666677777777
Q ss_pred HHHhhhhHH
Q 045616 285 RKLRKRSES 293 (671)
Q Consensus 285 Rk~Rrr~E~ 293 (671)
|+.|..+|.
T Consensus 501 ~~~R~~lEk 509 (697)
T PF09726_consen 501 RRQRASLEK 509 (697)
T ss_pred HHHHHHHHH
Confidence 777766653
No 5
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.20 E-value=0.24 Score=51.04 Aligned_cols=117 Identities=23% Similarity=0.342 Sum_probs=76.3
Q ss_pred HHhhcccccCcccHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHHHHH
Q 045616 204 NRIWSLEEQHASNVS-LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAED--KLIRKSKEQDRIHAAVQSVRDE 280 (671)
Q Consensus 204 nrIW~leeq~~s~~S-lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEE--K~awKsKE~eki~aai~slk~E 280 (671)
..|+.+.+.....++ +-..+..||..+|..|..+..++....-+++.+...+.+= |.....+.+..+..-|..++.+
T Consensus 32 ~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ 111 (312)
T PF00038_consen 32 SEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKD 111 (312)
T ss_dssp HHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 456556666444444 6677888888888888888887776666666555544442 2222245666777788888899
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 281 LEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGER 320 (671)
Q Consensus 281 Le~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ER 320 (671)
|+.+...|-.+|.--.-|-.||.-.+....+-+.+|...-
T Consensus 112 ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 112 LDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 9999988888888888888888777766666666665433
No 6
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.86 E-value=0.92 Score=54.65 Aligned_cols=143 Identities=21% Similarity=0.261 Sum_probs=112.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH---------HHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 045616 213 HASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDD---------LMKQIAEDKLIRKSKEQDRIHAAVQSVRDELED 283 (671)
Q Consensus 213 ~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~---------l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ 283 (671)
.+--|.-+--|+.||.+||...++++.-+..++.+|+. |=|-+||||+--=--|-+-.+.-|++|--+||-
T Consensus 271 kSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEI 350 (1243)
T KOG0971|consen 271 KSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEI 350 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667789999999999999999888888887765 458889999987777777777777777777664
Q ss_pred HHH---------------HhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH
Q 045616 284 ERK---------------LRKRSESLHRKLARELS-------EVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYD 341 (671)
Q Consensus 284 ERk---------------~Rrr~E~ln~KL~~ELs-------E~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edk 341 (671)
=|- --+++|.-|.||-.-|- ..|.-..++.|+||+-+-.-.-|+.+-.-|-+.|...+
T Consensus 351 LKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 351 LKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAE 430 (1243)
T ss_pred HHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 332 24789999999987764 45677788999999988888888888888999988888
Q ss_pred HHHHHHhhhchhhh
Q 045616 342 QELHALKQKSDKNW 355 (671)
Q Consensus 342 aEVe~LKres~k~~ 355 (671)
.-|-.||..-+...
T Consensus 431 s~iadlkEQVDAAl 444 (1243)
T KOG0971|consen 431 STIADLKEQVDAAL 444 (1243)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888887755433
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.36 E-value=1.1 Score=57.78 Aligned_cols=129 Identities=23% Similarity=0.392 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh--HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 045616 221 KALKTELDHARVKIKELLRDQQADRHEMDDLMKQI--AEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKL 298 (671)
Q Consensus 221 ~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql--aEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 298 (671)
+.|+.|+..-+.+|..|.+|++.-...+.+|.-.+ .+||+.--+|...|+...|+++...|+.|++.|..+|...+||
T Consensus 967 ~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkl 1046 (1930)
T KOG0161|consen 967 KNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKL 1046 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555444444444444433 4567777788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---------------------HHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhh
Q 045616 299 ARELSEVKSTL---------------------SNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQ 349 (671)
Q Consensus 299 ~~ELsE~Kss~---------------------~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKr 349 (671)
.-||...+.+. .+....++.|.....-+...-.||..+|.+.+++++..+.
T Consensus 1047 e~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~ 1118 (1930)
T KOG0161|consen 1047 EGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERA 1118 (1930)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88884443332 2333334444444455555566666666666555554443
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.97 E-value=1.3 Score=54.98 Aligned_cols=184 Identities=18% Similarity=0.236 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-------------hhHHHHHHHHhHHHHHHhh----hhHHHHHHHHHHHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQAD-------------RHEMDDLMKQIAEDKLIRK----SKEQDRIHAAVQSVRDE 280 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~-------------~~eie~l~KqlaEEK~awK----sKE~eki~aai~slk~E 280 (671)
.-+..++.+|......+..+..+..+. ..++..+-+++.+-...-. .+.-+.|...|+.+..+
T Consensus 758 ~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~e 837 (1311)
T TIGR00606 758 RDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHE 837 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHH
Confidence 445566666666666666666665444 4455555555543222111 01112333444444444
Q ss_pred HH-------HHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 281 LE-------DERKLRKRSESLHRKL---ARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 281 Le-------~ERk~Rrr~E~ln~KL---~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
|+ .-.....+.+.--..| -.++.+.+..+.+.++....=...-+-+...+.++...|.+.+.+++.|..+
T Consensus 838 l~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~ 917 (1311)
T TIGR00606 838 LDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 43 3344444444444444 4556777777777666555555555555566666666666666666666666
Q ss_pred chhhhccCCccchhhHHhhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHhhh
Q 045616 351 SDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKR 410 (671)
Q Consensus 351 s~k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k~ 410 (671)
-.+.. .++.=+.-...=.++..|+++.. |......+..|..+|+.|+....
T Consensus 918 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~y~~~~~ 968 (1311)
T TIGR00606 918 LEKDQ-----QEKEELISSKETSNKKAQDKVND----IKEKVKNIHGYMKDIENKIQDGK 968 (1311)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCC
Confidence 44333 11111222222223455555543 33445677777777777776543
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.65 E-value=3.6 Score=48.94 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=15.3
Q ss_pred ceeeecccccccceeeEEEEEEeccCC
Q 045616 15 LVFLGFGYCQARATIKFSILIVGLCHP 41 (671)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (671)
|...||.+=.-..+|.|+--+..|+.+
T Consensus 5 l~l~nf~s~~~~~~i~f~~~~~~i~G~ 31 (1164)
T TIGR02169 5 IELENFKSFGKKKVIPFSKGFTVISGP 31 (1164)
T ss_pred EEEeCeeeECCeeEEeecCCeEEEECC
Confidence 456677755556778885433333333
No 10
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.40 E-value=6.2 Score=45.66 Aligned_cols=174 Identities=18% Similarity=0.258 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHH------HHH---HHHHHHHHHHHHHHHHHhhhhHH
Q 045616 223 LKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQ------DRI---HAAVQSVRDELEDERKLRKRSES 293 (671)
Q Consensus 223 Lk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~------eki---~aai~slk~ELe~ERk~Rrr~E~ 293 (671)
-.+||-.||.-|.+-.+++-....+|..|--++.+=|.-|-.+++ +++ ...+-.+.+|+.-=++..+.+|.
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 355666666666666555555555555555555555554544432 233 35677888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc----cccHHHHHHHhhhchhhhccCCccchhhHHhh
Q 045616 294 LHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGI----KDYDQELHALKQKSDKNWTGKGEQDHLILHIS 369 (671)
Q Consensus 294 ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI----~edkaEVe~LKres~k~~~ee~eeER~MLqmA 369 (671)
-...|.+|..-....+..+.+.|+.|.-.|.-++.-|..|-.+| ..++.||+++++...++.. ..-|.
T Consensus 170 e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t---~~~r~----- 241 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT---ADNRE----- 241 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc---ccchH-----
Confidence 99999999999999999999999999998888888887766654 4566888877776544331 12221
Q ss_pred hhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHhh
Q 045616 370 ESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAK 409 (671)
Q Consensus 370 EvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k 409 (671)
..+. ..|+-+-|-+.+++ .++..-+.|||.+.+.|
T Consensus 242 -~F~~-eL~~Ai~eiRaqye---~~~~~nR~diE~~Y~~k 276 (546)
T KOG0977|consen 242 -YFKN-ELALAIREIRAQYE---AISRQNRKDIESWYKRK 276 (546)
T ss_pred -HHHH-HHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHH
Confidence 1111 23333344444433 56667778888887776
No 11
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.26 E-value=3.3 Score=51.30 Aligned_cols=175 Identities=19% Similarity=0.233 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHH--HhhhhHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 045616 231 RVKIKELLRDQQADRHEMDDLMKQIAEDKL--IRKSKEQD-RIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKS 307 (671)
Q Consensus 231 r~~I~eL~~E~~s~~~eie~l~KqlaEEK~--awKsKE~e-ki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Ks 307 (671)
++.|-+...+....+.++...-.++.-++. +.|.+.+. .|+.....++...+..++-++.+|.-+.|+-..|.-+.+
T Consensus 333 ~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~ 412 (1293)
T KOG0996|consen 333 RAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTS 412 (1293)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555542221 22333333 477777888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhH-Hhhhhhhhh--hhhhhHHHh
Q 045616 308 TLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLIL-HISESWLDE--RMQMKLEEA 384 (671)
Q Consensus 308 s~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~ML-qmAEvWREE--RVQMKL~eA 384 (671)
-+.++.+++|+.++.+.-+|..-...-..|.+...|++.|.....+.. .++++.+.-| +=++..++| +.|-.|+..
T Consensus 413 k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~-~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~ 491 (1293)
T KOG0996|consen 413 KIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEE-RELDEILDSLKQETEGIREEIEKLEKELMPL 491 (1293)
T ss_pred HHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999998888888888777777776655544333 2233322222 123333332 234444444
Q ss_pred hhcccchhhHHHHhhHHHHHHH
Q 045616 385 QYGLSEKNSIVDKLGFEIEAYL 406 (671)
Q Consensus 385 k~~leeK~s~vdkL~~elEaFL 406 (671)
...+-+.-+.++-...||+-.+
T Consensus 492 ~~~~n~~~~e~~vaesel~~L~ 513 (1293)
T KOG0996|consen 492 LKQVNEARSELDVAESELDILL 513 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 12
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.16 E-value=14 Score=42.84 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=76.3
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 045616 209 LEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLR 288 (671)
Q Consensus 209 leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~R 288 (671)
+.++..++-.-+..|..||.-|-+.=...+.|-...+-+.+.|-.|+++..+.||.-. .......+.++...+.. +
T Consensus 295 ~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~-~q~~qEk~~l~~~~e~~---k 370 (546)
T PF07888_consen 295 AQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR-SQWAQEKQALQHSAEAD---K 370 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh---H
Confidence 3444444445566666666666666667777777777788888888998888885422 11111112222222111 2
Q ss_pred hhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 289 KRSESLHRKL---ARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 289 rr~E~ln~KL---~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
.+++.|++.| .+-|.|-++.=.++-++|-+|+-++.+ .|-|.-++|.|+++-++.+..|
T Consensus 371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~v---qlsE~~rel~Elks~lrv~qkE 432 (546)
T PF07888_consen 371 DEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRV---QLSENRRELQELKSSLRVAQKE 432 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554444 444555445555666666666666633 4555666777777766655555
No 13
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.10 E-value=3.4 Score=51.31 Aligned_cols=147 Identities=20% Similarity=0.282 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 045616 223 LKTELDHARVKIKELLRDQQA-----DRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRK 297 (671)
Q Consensus 223 Lk~EL~~Ar~~I~eL~~E~~s-----~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 297 (671)
+-.||+.+..+.+-.+.|-+. .++++.- .+||++-...+..++.+-|+.+++||++..+-..++-.-+.|
T Consensus 466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke-----~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~k 540 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQREQKALLQHEQKE-----VEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEK 540 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566665555444444433 2233333 344555555677889999999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcc---ccHHHHHHHhhhchhhhccCCccchhhHHhhhhhhh
Q 045616 298 LARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIK---DYDQELHALKQKSDKNWTGKGEQDHLILHISESWLD 374 (671)
Q Consensus 298 L~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~---edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWRE 374 (671)
+..+..++..+-.-+.-+.+.++|-|...++.|..+-.... +.+.-+..| .++.... -++.+.....+|.-++
T Consensus 541 v~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~l-e~~k~~l---s~~~~~~~~~~e~~~~ 616 (1317)
T KOG0612|consen 541 VNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLL-EESKSKL---SKENKKLRSELEKERR 616 (1317)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHH
Confidence 99998888888888888999999999999999998765544 333332222 2222111 1455556666666665
Q ss_pred hhhh
Q 045616 375 ERMQ 378 (671)
Q Consensus 375 ERVQ 378 (671)
.|.+
T Consensus 617 ~~~~ 620 (1317)
T KOG0612|consen 617 QRTE 620 (1317)
T ss_pred HHHH
Confidence 5544
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.88 E-value=6.5 Score=46.83 Aligned_cols=27 Identities=19% Similarity=0.355 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 045616 223 LKTELDHARVKIKELLRDQQADRHEMD 249 (671)
Q Consensus 223 Lk~EL~~Ar~~I~eL~~E~~s~~~eie 249 (671)
|+.++...+.++..+..+....+.+++
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l~ 318 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELE 318 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.47 E-value=6.9 Score=48.34 Aligned_cols=59 Identities=25% Similarity=0.327 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhH
Q 045616 198 ELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIA 256 (671)
Q Consensus 198 ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla 256 (671)
+|..+..+|=.+..+-.....-+..++.++..+...+.++....+..+.+++.+-++++
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433444433344444444556666666666666666666655555555555554444
No 16
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.89 E-value=13 Score=44.08 Aligned_cols=6 Identities=33% Similarity=0.252 Sum_probs=3.0
Q ss_pred cCCCcc
Q 045616 174 VTPTSS 179 (671)
Q Consensus 174 ~tpt~S 179 (671)
++|.++
T Consensus 648 v~~~G~ 653 (1179)
T TIGR02168 648 VTLDGD 653 (1179)
T ss_pred EecCCE
Confidence 555553
No 17
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=92.13 E-value=5.1 Score=48.07 Aligned_cols=99 Identities=25% Similarity=0.235 Sum_probs=64.4
Q ss_pred ccccccccchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhH
Q 045616 187 GESRYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKE 266 (671)
Q Consensus 187 ~e~~~~L~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE 266 (671)
+-+.--++.|.+..+||.++ .+...--+|-+..+-.+||.+=..|+--.--+.....+.+.+++...+=-..--+|+
T Consensus 840 ~K~~~l~kns~k~~ei~s~l---ke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~ 916 (1259)
T KOG0163|consen 840 RKINALLKNSLKTIEILSRL---KEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKE 916 (1259)
T ss_pred HHHHHHHHhhHHHHHHHHHH---hcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 44556678889999999988 456666667788888889988888874333344455556666665533222223355
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHh
Q 045616 267 QDRIHA--AVQSVRDELEDERKLR 288 (671)
Q Consensus 267 ~eki~a--ai~slk~ELe~ERk~R 288 (671)
+.-|.. -++.+++++|.||+-|
T Consensus 917 ~q~~~e~er~rk~qE~~E~ER~rr 940 (1259)
T KOG0163|consen 917 QQQIEELERLRKIQELAEAERKRR 940 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 554443 3567788888888754
No 18
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.94 E-value=12 Score=46.20 Aligned_cols=162 Identities=19% Similarity=0.266 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHH------HHHHHHHHHHHHHHHhhhhHHH
Q 045616 221 KALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHA------AVQSVRDELEDERKLRKRSESL 294 (671)
Q Consensus 221 ~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~a------ai~slk~ELe~ERk~Rrr~E~l 294 (671)
.-+..+|+.++..+..|..+- .++++.++-+-+||..-+.++.+-++. -|.+++++++.++.-|......
T Consensus 254 ~~~~~~~~~~~d~~~~~~~~i----~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~ 329 (1200)
T KOG0964|consen 254 EQYIDALDKVEDESEDLKCEI----KELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHV 329 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHH
Confidence 345556777777777777665 567777777777877766665554444 4789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHhhH---HHHHHHHHH-HHhhccc-------------cHHHHHHHhhhchh
Q 045616 295 HRKLARELSEVKSTLSNALRELEG----ERRSR---KLLEELCDE-FAIGIKD-------------YDQELHALKQKSDK 353 (671)
Q Consensus 295 n~KL~~ELsE~Kss~~~alkelE~----ERKaR---ellE~vCDE-LAkgI~e-------------dkaEVe~LKres~k 353 (671)
+.++..++.+-+--+++....|.. |.+.+ ..+++--.+ +|+. |. .+.|++.|++--.-
T Consensus 330 l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kq-gr~sqFssk~eRDkwir~ei~~l~~~i~~ 408 (1200)
T KOG0964|consen 330 LQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQ-GRYSQFSSKEERDKWIRSEIEKLKRGIND 408 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-ccccccCcHHHHHHHHHHHHHHHHHHHhh
Confidence 999988877777666665544432 22222 222221111 2221 11 12233333332110
Q ss_pred hhccCCccchhhHHhhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHH
Q 045616 354 NWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIE 403 (671)
Q Consensus 354 ~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE 403 (671)
--=+++-.||-+.+++..+++|...+..|...|.
T Consensus 409 ----------------~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~ 442 (1200)
T KOG0964|consen 409 ----------------TKEQENILQKEIEDLESELKEKLEEIKELESSIN 442 (1200)
T ss_pred ----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 0113566889999999999998888777766554
No 19
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.85 E-value=8.6 Score=47.31 Aligned_cols=131 Identities=18% Similarity=0.294 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 045616 217 VSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHR 296 (671)
Q Consensus 217 ~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~ 296 (671)
+.-+..|..++..++.+|++...-.+....+|.-+=+.+.+.+..+.++-.| ...-|+-.+..++..++-=++.|..-.
T Consensus 740 ~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkd-l~keik~~k~~~e~~~~~~ek~~~e~e 818 (1174)
T KOG0933|consen 740 LDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKD-LEKEIKTAKQRAEESSKELEKRENEYE 818 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777666666555556655555555555444433322 233455666666666666666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhh
Q 045616 297 KLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNW 355 (671)
Q Consensus 297 KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~ 355 (671)
+|.-|..+++.+....-+.|+. ++.-|+.|..+|++.++.|.....+..+..
T Consensus 819 ~l~lE~e~l~~e~~~~k~~l~~-------~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~ 870 (1174)
T KOG0933|consen 819 RLQLEHEELEKEISSLKQQLEQ-------LEKQISSLKSELGNLEAKVDKVEKDVKKAQ 870 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 7777776666555555444433 445566666666666665554444443333
No 20
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.67 E-value=18 Score=37.43 Aligned_cols=66 Identities=29% Similarity=0.399 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLR 288 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~R 288 (671)
.-+..|+.|++..+.+..+..+.+.....++..|-+.+.++.++ +..+..-|+.+++||+.-++..
T Consensus 75 ~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~-----r~~le~~i~~L~eEl~fl~~~h 140 (312)
T PF00038_consen 75 LEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLA-----RVDLENQIQSLKEELEFLKQNH 140 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----HhHHHHHHHHHHHHHHHHHhhh
Confidence 44677777777777777777777777777788877777766543 4445556777777777665543
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=91.35 E-value=12 Score=44.14 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHhhccccHHHHHHH
Q 045616 322 SRKLLEELCDEFAIGIKDYDQELHAL 347 (671)
Q Consensus 322 aRellE~vCDELAkgI~edkaEVe~L 347 (671)
.+..++...+++...+.+-+..+..|
T Consensus 614 ~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 614 KREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 22
>PHA02562 46 endonuclease subunit; Provisional
Probab=91.00 E-value=16 Score=40.55 Aligned_cols=139 Identities=13% Similarity=0.191 Sum_probs=60.8
Q ss_pred chHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHH
Q 045616 195 TSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAV 274 (671)
Q Consensus 195 TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai 274 (671)
+..+-.++|..|.++.-- ..+. ..++..+..++..|.+|..+......+++.+-+.+.+-+.. ....+
T Consensus 148 ~~~er~~il~~l~~~~~~--~~~~--~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~--------~~~~i 215 (562)
T PHA02562 148 SAPARRKLVEDLLDISVL--SEMD--KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKK--------NGENI 215 (562)
T ss_pred ChHhHHHHHHHHhCCHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------HHHHH
Confidence 345667888888765421 1111 22344444445555555544444444444333222222111 11224
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHhhcc
Q 045616 275 QSVRDELEDERKLRKRSESLHRKLARE--------------LSEVKSTLSNALRELEGERRSRKLLEE--LCDEFAIGIK 338 (671)
Q Consensus 275 ~slk~ELe~ERk~Rrr~E~ln~KL~~E--------------LsE~Kss~~~alkelE~ERKaRellE~--vCDELAkgI~ 338 (671)
+.++.+++.-.+.+..++.--.+|-.+ |.+++.....+-.+++.-.+....++. .|.---+.+.
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~ 295 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQIS 295 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCC
Confidence 444444444444443333333333333 333444455555555555555555543 5544444444
Q ss_pred ccHHHHH
Q 045616 339 DYDQELH 345 (671)
Q Consensus 339 edkaEVe 345 (671)
+...++.
T Consensus 296 ~~~~~~~ 302 (562)
T PHA02562 296 EGPDRIT 302 (562)
T ss_pred CcHHHHH
Confidence 4433333
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.66 E-value=11 Score=46.64 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=20.0
Q ss_pred hhhhhhh-hhhhhhHHHhhhcccchhhHHHHhhHHHHH
Q 045616 368 ISESWLD-ERMQMKLEEAQYGLSEKNSIVDKLGFEIEA 404 (671)
Q Consensus 368 mAEvWRE-ERVQMKL~eAk~~leeK~s~vdkL~~elEa 404 (671)
+.+.|++ .+.|.++.+++..+.+....++.|....++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 499 (1163)
T COG1196 462 LKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA 499 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444544 345555666655555555556665555443
No 24
>PRK09039 hypothetical protein; Validated
Probab=90.65 E-value=10 Score=41.07 Aligned_cols=140 Identities=18% Similarity=0.272 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLA 299 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 299 (671)
|+.++.||+...++|.+|=.- |.=| ......+...|..|+.+|+.=+..|.++|.....+.
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~--------------L~le-----~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~ 108 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADL--------------LSLE-----RQGNQDLQDSVANLRASLSAAEAERSRLQALLAELA 108 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHH--------------HHHH-----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 788889999999998774322 2222 122344455555666666655556666666555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhh
Q 045616 300 RELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQM 379 (671)
Q Consensus 300 ~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWREERVQM 379 (671)
....+++..+...-.+|..++. +-.|--..|.-.+++|++||.. =.++|.
T Consensus 109 ~~~~~~~~~~~~l~~~L~~~k~-------~~se~~~~V~~L~~qI~aLr~Q-----------------------la~le~ 158 (343)
T PRK09039 109 GAGAAAEGRAGELAQELDSEKQ-------VSARALAQVELLNQQIAALRRQ-----------------------LAALEA 158 (343)
T ss_pred hhcchHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHH-----------------------HHHHHH
Confidence 4344444333333333333222 1222222233333344433333 123455
Q ss_pred hHHHhhhcccchhhHHHHhhHHHHHHHHh
Q 045616 380 KLEEAQYGLSEKNSIVDKLGFEIEAYLQA 408 (671)
Q Consensus 380 KL~eAk~~leeK~s~vdkL~~elEaFL~~ 408 (671)
-|.+++....+....++.|..+|+.=|..
T Consensus 159 ~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 159 ALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666666666666666544
No 25
>PRK02224 chromosome segregation protein; Provisional
Probab=90.43 E-value=34 Score=40.56 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 045616 295 HRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEF 333 (671)
Q Consensus 295 n~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDEL 333 (671)
+..|-.++++....+..+-..++..+..-.-+++-.+++
T Consensus 358 ~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444455555555555555555554
No 26
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=89.86 E-value=4.6 Score=41.13 Aligned_cols=166 Identities=23% Similarity=0.305 Sum_probs=91.0
Q ss_pred chHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhh-hhHHHHHHHH
Q 045616 195 TSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRK-SKEQDRIHAA 273 (671)
Q Consensus 195 TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awK-sKE~eki~aa 273 (671)
+-+|||+.|+=+ =+|-++-+ -+|.+|++| +++.++.|.+=-...+.+-+.-|--|-.+-. ..+.+ ++
T Consensus 11 Sk~dLL~LLsil--EGELqARD-~vI~~Lkae------r~~~~~~e~~Yg~~~~~dp~~ALqRD~~~~~~~~~~~---~v 78 (192)
T PF09727_consen 11 SKDDLLKLLSIL--EGELQARD-VVIAMLKAE------RKKVFLLEARYGFYNPNDPFLALQRDSEAAGGEKEEE---DV 78 (192)
T ss_pred CHHHHHHHHHHH--HHHHHHHH-HHHHHHHHh------hhhHHHHHHHHcCCCcCcHHHHHHhHHHhcCCCCccC---cc
Confidence 457999999877 35556665 458888876 2333444432111222222222222221111 11111 11
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhc--
Q 045616 274 VQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKS-- 351 (671)
Q Consensus 274 i~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres-- 351 (671)
...=-.+|+ ++--+--..+.|+..-|+.+...-.+.+.|||.||+...-.=.-.|+|.-.. +.|-+.|++..
T Consensus 79 ~~~pl~~Le---~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lL---EkEReRLkq~lE~ 152 (192)
T PF09727_consen 79 YENPLAELE---KLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFTNLL---EKERERLKQQLEQ 152 (192)
T ss_pred hhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH---HHHHHHHHHHHHH
Confidence 222222332 2333444578899999999999999999999999998875555556655553 33444455443
Q ss_pred hhhhccCCccchhhHHhhhhhhhhhhhhh
Q 045616 352 DKNWTGKGEQDHLILHISESWLDERMQMK 380 (671)
Q Consensus 352 ~k~~~ee~eeER~MLqmAEvWREERVQMK 380 (671)
+|.+.+ ..|++.=.+...|.|||++-|
T Consensus 153 Ek~~~~--~~EkE~~K~~~~l~eE~~k~K 179 (192)
T PF09727_consen 153 EKAQQK--KLEKEHKKLVSQLEEERTKLK 179 (192)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 222211 344444566677777877644
No 27
>PRK03918 chromosome segregation protein; Provisional
Probab=89.85 E-value=40 Score=39.75 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=14.8
Q ss_pred ccchHHHHHHHHHhhccccc
Q 045616 193 LKTSTELLKVLNRIWSLEEQ 212 (671)
Q Consensus 193 L~TS~ELlkVLnrIW~leeq 212 (671)
+++.++..++|.+|-+++.-
T Consensus 141 ~~~~~~r~~~~~~~~~~~~~ 160 (880)
T PRK03918 141 LESDESREKVVRQILGLDDY 160 (880)
T ss_pred hcCcHHHHHHHHHHhCCHHH
Confidence 45678899999999765543
No 28
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.60 E-value=40 Score=38.52 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=24.0
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 045616 211 EQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLM 252 (671)
Q Consensus 211 eq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~ 252 (671)
+||+..++-+.+-+.||...|....-+..++-..-...+..+
T Consensus 123 ~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~ 164 (522)
T PF05701_consen 123 EQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAV 164 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666555555544444443
No 29
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=89.53 E-value=29 Score=45.78 Aligned_cols=86 Identities=21% Similarity=0.355 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHH--HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDK--LIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHR 296 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK--~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~ 296 (671)
.++.|+..++.-..++.+|..-.....+++..|-+++.|.. ..--+|....+..-|+.++.+|+.|-|.+--++...+
T Consensus 1246 ~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~ 1325 (1930)
T KOG0161|consen 1246 QLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALR 1325 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666666667777788888888885443 3344566667777788999999999888888888777
Q ss_pred HHHHHHHH
Q 045616 297 KLARELSE 304 (671)
Q Consensus 297 KL~~ELsE 304 (671)
+|-.|+..
T Consensus 1326 ~l~~e~~~ 1333 (1930)
T KOG0161|consen 1326 QLEHELDL 1333 (1930)
T ss_pred HHHHHHHH
Confidence 77777543
No 30
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=89.36 E-value=21 Score=34.37 Aligned_cols=93 Identities=26% Similarity=0.473 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 045616 220 IKALKTELDHARVKI-------KELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSE 292 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I-------~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E 292 (671)
|.+|+.|.+.|..++ ++|.++.-...++|..|-+++.- =-.+-+++...|..++..|+.--+....+|
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~-----lE~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQ-----LEEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 457777777666554 55555555555666666554421 123578899999999999999999999999
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHH
Q 045616 293 SLHRKLA---RELSEVKSTLSNALRELE 317 (671)
Q Consensus 293 ~ln~KL~---~ELsE~Kss~~~alkelE 317 (671)
.||+|+. .||..+...+.-+...|.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999964 577766666655555544
No 31
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.95 E-value=39 Score=42.32 Aligned_cols=54 Identities=28% Similarity=0.394 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIH 271 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~ 271 (671)
..+..++.++.+++..++......+..+.+.+.+-.++.+++...+.+-+..+.
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 688 (1201)
T PF12128_consen 635 KKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLN 688 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888999999998888888888888888887777777777766665555544
No 32
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=88.73 E-value=41 Score=38.51 Aligned_cols=17 Identities=47% Similarity=0.765 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045616 269 RIHAAVQSVRDELEDER 285 (671)
Q Consensus 269 ki~aai~slk~ELe~ER 285 (671)
.++..+.+|+.||+.++
T Consensus 306 ~L~~~vesL~~ELe~~K 322 (522)
T PF05701_consen 306 SLRASVESLRSELEKEK 322 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 33
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=88.59 E-value=13 Score=34.78 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhhcccccC------cccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 045616 196 STELLKVLNRIWSLEEQH------ASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDD 250 (671)
Q Consensus 196 S~ELlkVLnrIW~leeq~------~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~ 250 (671)
.+-|+|.+..+-.+.+.. ...-.+.-.+..+|+.+...+.++..=-.+++.++++
T Consensus 18 l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~ 78 (139)
T PF05615_consen 18 LKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKREREN 78 (139)
T ss_pred HHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777665555432 2334556777777777777777766655555554443
No 34
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.31 E-value=15 Score=45.51 Aligned_cols=161 Identities=20% Similarity=0.246 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhcccccCcc------cHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHH
Q 045616 197 TELLKVLNRIWSLEEQHAS------NVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRI 270 (671)
Q Consensus 197 ~ELlkVLnrIW~leeq~~s------~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki 270 (671)
++.-+.++.+ ..+..+- ....+.+++.|.......|++-...-+..+.+++.+-|++++.+..- ...+
T Consensus 319 teiea~i~~~--~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~----~~~~ 392 (1074)
T KOG0250|consen 319 TEIEAKIGEL--KDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT----NNEL 392 (1074)
T ss_pred hHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhh
Confidence 4666667776 3444322 22333333443333333444444444445555666666666554221 1122
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 271 HAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 271 ~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
..-+..+.++++.=.+-...+|.++.+|..|+-+ +..++..+...+.-++.--..|.+.|..+..++..|+.-
T Consensus 393 ~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~-------~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~ 465 (1074)
T KOG0250|consen 393 GSELEERENKLEQLKKEVEKLEEQINSLREELNE-------VKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKT 465 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222223333333333344455555666666555 456666677777788888899999999999999999876
Q ss_pred -chhhhccCCccchhhHHhhhhhhh
Q 045616 351 -SDKNWTGKGEQDHLILHISESWLD 374 (671)
Q Consensus 351 -s~k~~~ee~eeER~MLqmAEvWRE 374 (671)
..++- -+-..|-++=..-..
T Consensus 466 k~dkvs----~FG~~m~~lL~~I~r 486 (1074)
T KOG0250|consen 466 KTDKVS----AFGPNMPQLLRAIER 486 (1074)
T ss_pred ccchhh----hcchhhHHHHHHHHH
Confidence 34443 355666665444433
No 35
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=88.21 E-value=28 Score=34.23 Aligned_cols=66 Identities=21% Similarity=0.420 Sum_probs=47.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchh
Q 045616 286 KLRKRSESLHRKLARELSEVKSTLSN-------ALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDK 353 (671)
Q Consensus 286 k~Rrr~E~ln~KL~~ELsE~Kss~~~-------alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k 353 (671)
++++..+.++.+|..|+..+++.++- -+++.......+ +.++-.++..+|.+.+.++|.+|-+..+
T Consensus 84 ~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k--i~e~~~ki~~ei~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 84 KLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK--IQELNNKIDTEIANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777788888888888777765542 233333333333 7888889999999999999988877543
No 36
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=87.99 E-value=34 Score=35.05 Aligned_cols=67 Identities=27% Similarity=0.506 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 045616 266 EQDRIHAAVQSVRDELEDERKLRKR-SESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFA 334 (671)
Q Consensus 266 E~eki~aai~slk~ELe~ERk~Rrr-~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELA 334 (671)
--+.+..-|..|...+..|+.-|.. .|.++..|+++|.+...+|..-.. .++.+...++..|++.+.
T Consensus 93 ~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~--~R~erE~~i~krl~e~~~ 160 (247)
T PF06705_consen 93 RLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERN--EREEREENILKRLEEEEN 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 3344555567788888888887776 888889999999877666554322 222233345555555443
No 37
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.84 E-value=18 Score=41.57 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhHHHHHHHHhHHHHHHhh
Q 045616 218 SLIKALKTELDHARVKIKELLRDQ-----QADRHEMDDLMKQIAEDKLIRK 263 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~-----~s~~~eie~l~KqlaEEK~awK 263 (671)
+-|..|+.+|..+...|..|.=+. ..-...|+.|-..|.-|..|.+
T Consensus 256 ~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~ 306 (569)
T PRK04778 256 KEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARK 306 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777766665555553332 2223345555555555554444
No 38
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=87.77 E-value=24 Score=42.93 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 266 EQDRIHAAVQSVRDELEDERKLRK-----------RSESLHRKLARELSEVKSTLSNALR 314 (671)
Q Consensus 266 E~eki~aai~slk~ELe~ERk~Rr-----------r~E~ln~KL~~ELsE~Kss~~~alk 314 (671)
|.--....|..+++||+.+++.|- =++..|.||.++.+++.-++..+..
T Consensus 285 ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarr 344 (1265)
T KOG0976|consen 285 ELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARR 344 (1265)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445568889999999998764 4678899999999988877665543
No 39
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=87.55 E-value=8 Score=45.31 Aligned_cols=82 Identities=23% Similarity=0.327 Sum_probs=54.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 045616 213 HASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSE 292 (671)
Q Consensus 213 ~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E 292 (671)
-+.-.+.|..+-.||+.|+.+|..|++| +++|.-|++...-.-+...-+-|.+...- |.. .+
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e-------~e~L~~ql~~~N~~~~~~~~~~i~~~~~~----L~~-------kd 291 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLERE-------VEQLREQLAKANSSKKLAKIDDIDALGSV----LNQ-------KD 291 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhhhhccCCchHHHHHH----HhH-------HH
Confidence 3445578889999999999999999987 57777777766544333322233333222 322 77
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045616 293 SLHRKLARELSEVKSTLSNA 312 (671)
Q Consensus 293 ~ln~KL~~ELsE~Kss~~~a 312 (671)
++|.+|..++-..++|+.+.
T Consensus 292 ~~i~~L~~di~~~~~S~~~e 311 (629)
T KOG0963|consen 292 SEIAQLSNDIERLEASLVEE 311 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888887777666543
No 40
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=86.84 E-value=23 Score=34.77 Aligned_cols=94 Identities=17% Similarity=0.356 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHH
Q 045616 218 SLIKALKTELDHAR-VKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDEL-EDERKLRKRSESLH 295 (671)
Q Consensus 218 Slv~aLk~EL~~Ar-~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL-e~ERk~Rrr~E~ln 295 (671)
+.++.|+.|+...+ .++..|..+...-+++++.|-.+|.+|-. +-+.-++--+..-|.++ +..+....+...+|
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~----~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~ 133 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEIN----KLRAEVKLDLNLEKGRIREEQAKQELKIQELN 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555666665443 55566666666666666666666655531 11111111112222222 12234556788899
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045616 296 RKLARELSEVKSTLSNALRE 315 (671)
Q Consensus 296 ~KL~~ELsE~Kss~~~alke 315 (671)
.|+..|++.+++.+..+.-+
T Consensus 134 ~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 134 NKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877665433
No 41
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=86.77 E-value=33 Score=35.14 Aligned_cols=65 Identities=18% Similarity=0.360 Sum_probs=39.9
Q ss_pred hhhhhHHHHHHHHhHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHH
Q 045616 242 QADRHEMDDLMKQIAEDKLIRKSKEQDR---IHAAVQSVRDELEDERKLRKRSES-LHRKLARELSEVK 306 (671)
Q Consensus 242 ~s~~~eie~l~KqlaEEK~awKsKE~ek---i~aai~slk~ELe~ERk~Rrr~E~-ln~KL~~ELsE~K 306 (671)
..--..+..|-..+.+|+.-|....... +..-|..+..-++.||..|...|. +-+||+.+...++
T Consensus 95 ~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~ 163 (247)
T PF06705_consen 95 DSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQ 163 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667777777777776665553 555667777777777777765543 4455555544433
No 42
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.36 E-value=27 Score=42.25 Aligned_cols=175 Identities=19% Similarity=0.323 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh----------HHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQI----------AEDKLIR-KSKEQDRIHAAVQSVRDELEDERK 286 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql----------aEEK~aw-KsKE~eki~aai~slk~ELe~ERk 286 (671)
.=+.-|+..|+.++.+|.-+.++......+|+.|.-.| .+.-..| .-.+.+-...-++++.++.+-+..
T Consensus 128 ~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~ 207 (775)
T PF10174_consen 128 RELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHM 207 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33566667777777777777777777777777777655 1111222 223333444445555555555542
Q ss_pred HhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhh
Q 045616 287 LRKRSESLHRKLARELSEVKS-TLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLI 365 (671)
Q Consensus 287 ~Rrr~E~ln~KL~~ELsE~Ks-s~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~M 365 (671)
.=+ +.+++++..+-..++. ++.+++.. +-+ --..|=+.|.+.+.||..|+....-.- .+.++.|
T Consensus 208 ~~r--~~l~~~~~~~~~~a~t~alq~~ie~----Kd~------ki~~lEr~l~~le~Ei~~L~~~~~~~~---~~r~~~~ 272 (775)
T PF10174_consen 208 EAR--EQLHRRLQMERDDAETEALQTVIEE----KDT------KIASLERMLRDLEDEIYRLRSRGELSE---ADRDRLD 272 (775)
T ss_pred hhh--HHHHHHhhcCCCchhHHHHHHHHHH----HHH------HHHHHHHHHHHHHHHHHHHHhcccccc---cchHHHH
Confidence 221 2677777555544433 22222221 111 122455566668889998988753222 2334433
Q ss_pred HHhhhhhhhhhhhhh--HHHhhhcccchhhHHHHhhHHHHHHHHh
Q 045616 366 LHISESWLDERMQMK--LEEAQYGLSEKNSIVDKLGFEIEAYLQA 408 (671)
Q Consensus 366 LqmAEvWREERVQMK--L~eAk~~leeK~s~vdkL~~elEaFL~~ 408 (671)
=+ -|+-+-....|| +..++..|..|.+.+..|+.+|++-...
T Consensus 273 k~-le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~ 316 (775)
T PF10174_consen 273 KQ-LEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQ 316 (775)
T ss_pred HH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23 367777888898 9999999999999999999988865443
No 43
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=86.25 E-value=67 Score=36.62 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhhc-ccccCc---ccHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 196 STELLKVLNRIWS-LEEQHA---SNVSLIKALKTELDHARVKIKELLR 239 (671)
Q Consensus 196 S~ELlkVLnrIW~-leeq~~---s~~Slv~aLk~EL~~Ar~~I~eL~~ 239 (671)
-.+|..++|.++. +.+... ..-++|...+.++++...++.+|..
T Consensus 225 ~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~ 272 (582)
T PF09731_consen 225 VQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKE 272 (582)
T ss_pred HHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888888888863 333333 2335555555555555555555444
No 44
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.84 E-value=1.1e+02 Score=38.55 Aligned_cols=192 Identities=17% Similarity=0.219 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHH-------HHHHHHHHh
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADR---HEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRD-------ELEDERKLR 288 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~---~eie~l~KqlaEEK~awKsKE~eki~aai~slk~-------ELe~ERk~R 288 (671)
-+.+.+.||++.-.+++.|+.-.+-.+ .+++-.+..++=-+--...-+.-++-+.++.+.+ +|...+++=
T Consensus 685 ~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~ 764 (1174)
T KOG0933|consen 685 ELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERAL 764 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666665544333 2344334433332222222333444444444443 333444433
Q ss_pred hhhHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 289 KRSESLHR------------------KLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 289 rr~E~ln~------------------KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
+..+.--. -|.+||..+|.-+...-+++|+-....+.|.--|++|-++|..++..++.+...
T Consensus 765 k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~ 844 (1174)
T KOG0933|consen 765 KKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQ 844 (1174)
T ss_pred HHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222 245566666666667777777777788888899999999999988888877766
Q ss_pred chhhhccCCccchhhHHhhhhhhh-hhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHhhhccc
Q 045616 351 SDKNWTGKGEQDHLILHISESWLD-ERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKRMSA 413 (671)
Q Consensus 351 s~k~~~ee~eeER~MLqmAEvWRE-ERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k~~~~ 413 (671)
....- . +-+-...-+..+-.+ .-+|-+|.+-+.-+-+=+..++.+..+.|.|+..+....
T Consensus 845 ~~~l~-~--e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~ 905 (1174)
T KOG0933|consen 845 ISSLK-S--ELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGE 905 (1174)
T ss_pred HHHHH-H--HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhccc
Confidence 43222 1 112222222222211 234555666555556666778888899999998887543
No 45
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.44 E-value=28 Score=41.93 Aligned_cols=83 Identities=23% Similarity=0.231 Sum_probs=49.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhhhHHHhhhcccchhhH
Q 045616 315 ELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSI 394 (671)
Q Consensus 315 elE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ 394 (671)
++.-|.+-|.|. .-|.+-..++.+..-|-.-|--+++..-.. +.|-.--+|-+.|+| +|.--|..||||..-
T Consensus 1089 ~qKhenqmrdl~-~qce~ni~EL~qlQNEKchlLvEhEtqklK--elde~h~~~~~~w~e-----~l~~rk~~lee~~~~ 1160 (1187)
T KOG0579|consen 1089 DQKHENQMRDLK-EQCEENIIELDQLQNEKCHLLVEHETQKLK--ELDEKHHEMRELWQE-----NLIARKTVLEEKFED 1160 (1187)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----hhhhhhhHHHHHHHH
Confidence 333444444443 357777777777666655444443222212 233444578899976 677788889998654
Q ss_pred HHHhhHHHHHHHHh
Q 045616 395 VDKLGFEIEAYLQA 408 (671)
Q Consensus 395 vdkL~~elEaFL~~ 408 (671)
. -.|+|.|..-
T Consensus 1161 ~---~reqE~f~~m 1171 (1187)
T KOG0579|consen 1161 E---LREQEVFYGM 1171 (1187)
T ss_pred H---HHHHHHHhcc
Confidence 3 3588999753
No 46
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=85.28 E-value=25 Score=31.69 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 045616 228 DHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKS 307 (671)
Q Consensus 228 ~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Ks 307 (671)
.+|.....++...+...-..++..+-++.-|| +|+..+..++-++ ++-|..|.+.=+..-.=|..+..+|.++..
T Consensus 9 ~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek----~kadqkyfa~mr~-~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~ 83 (96)
T PF08647_consen 9 EQAFKELSEQADKKVKELTILEQKKLRLEAEK----AKADQKYFAAMRS-KDALDNEMKKLNTQLSKSSELIEQLKETEK 83 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444444444444556666667777775 6777777777765 556777765555566668889999999999
Q ss_pred HHHHHHHHHHHH
Q 045616 308 TLSNALRELEGE 319 (671)
Q Consensus 308 s~~~alkelE~E 319 (671)
.|...++++|+|
T Consensus 84 ~~~~~l~~~Eke 95 (96)
T PF08647_consen 84 EFVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHHhhcc
Confidence 999999999986
No 47
>PRK11637 AmiB activator; Provisional
Probab=85.08 E-value=61 Score=35.76 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 295 HRKLARELSEVKSTLSNALRELEG 318 (671)
Q Consensus 295 n~KL~~ELsE~Kss~~~alkelE~ 318 (671)
.+++..++.+.+..+....++|+.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~ 191 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEE 191 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 48
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.93 E-value=51 Score=41.73 Aligned_cols=39 Identities=33% Similarity=0.492 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 045616 265 KEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELS 303 (671)
Q Consensus 265 KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELs 303 (671)
+.+..+.++.++++.|.++++|+|++.+.+++.|-.++.
T Consensus 543 ~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 543 SLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhh
Confidence 445566777889999999999999999999999888777
No 49
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.66 E-value=36 Score=40.75 Aligned_cols=31 Identities=23% Similarity=0.527 Sum_probs=17.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 283 DERKLRKRSESLHRKLARELSEVKSTLSNALRELE 317 (671)
Q Consensus 283 ~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE 317 (671)
.||+.++.++.++.+| -..+.++.++.+.++
T Consensus 633 AEr~~~~EL~~~~~~l----~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 633 AEREFKKELERMKDQL----QDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3777777777766664 223445555444433
No 50
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=83.61 E-value=96 Score=37.60 Aligned_cols=83 Identities=25% Similarity=0.252 Sum_probs=42.3
Q ss_pred HHhhHHHHHHHHHHHHhhccccHHHHHH-HhhhchhhhccCCccchhhHHhhhhhh-hhhhhhhHHHhhhcccchhhHHH
Q 045616 319 ERRSRKLLEELCDEFAIGIKDYDQELHA-LKQKSDKNWTGKGEQDHLILHISESWL-DERMQMKLEEAQYGLSEKNSIVD 396 (671)
Q Consensus 319 ERKaRellE~vCDELAkgI~edkaEVe~-LKres~k~~~ee~eeER~MLqmAEvWR-EERVQMKL~eAk~~leeK~s~vd 396 (671)
......+++..|.+|...+..++.+++. +..... .+ ....+.+-.+++.+. -+.+++.+.+....+++-...++
T Consensus 352 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~ 427 (908)
T COG0419 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQ-LE---EAIQELKEELAELSAALEEIQEELEELEKELEELERELE 427 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666652 222211 11 123344444445444 35566666666665555555555
Q ss_pred HhhHHHHHH
Q 045616 397 KLGFEIEAY 405 (671)
Q Consensus 397 kL~~elEaF 405 (671)
++...+..+
T Consensus 428 ~~~~~~~~~ 436 (908)
T COG0419 428 ELEEEIKKL 436 (908)
T ss_pred HHHHHHHHH
Confidence 555444433
No 51
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=83.41 E-value=1.2e+02 Score=37.56 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=65.5
Q ss_pred ccccchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHH
Q 045616 191 YNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRI 270 (671)
Q Consensus 191 ~~L~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki 270 (671)
.+...+++|++|||+.=.-.=.+...=+.|.-+..+|.+-++.|++-.++--.++..++.. ....++++...-+-.++
T Consensus 154 ~G~~~~t~l~~vl~~~~d~LyKP~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~r--~~~~~rl~~l~~elr~~ 231 (984)
T COG4717 154 SGSPASTKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLESR--RAEHARLAELRSELRAD 231 (984)
T ss_pred CCCcchHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHH
Confidence 3455789999999998321222444448899999999999999999999888888877753 33445555555555566
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 045616 271 HAAVQSVRDELEDERKLR 288 (671)
Q Consensus 271 ~aai~slk~ELe~ERk~R 288 (671)
+..|+.+.+.++.=+.++
T Consensus 232 ~~~i~~~~~~v~l~~~lq 249 (984)
T COG4717 232 RDHIRALRDAVELWPRLQ 249 (984)
T ss_pred HHHHHHHHHHHhhHHHHH
Confidence 666666666665544443
No 52
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=83.13 E-value=8.6 Score=44.08 Aligned_cols=84 Identities=14% Similarity=0.256 Sum_probs=48.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccc
Q 045616 283 DERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQD 362 (671)
Q Consensus 283 ~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeE 362 (671)
.|+-.-++.+.+-.|++++|.++...++...+..+.|.+.-++||..-+-+-+=+++....+..|.+-..|.-.++-..|
T Consensus 102 ~d~v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE 181 (508)
T PF00901_consen 102 EDEVREKHNKKIIEKFGNDLEKVYKFMKGQEKVEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDE 181 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 33333445555566677777777777777777777777777777666665555555555555444444333332334556
Q ss_pred hhhH
Q 045616 363 HLIL 366 (671)
Q Consensus 363 R~ML 366 (671)
++|+
T Consensus 182 ~~mv 185 (508)
T PF00901_consen 182 RKMV 185 (508)
T ss_pred HHHH
Confidence 6554
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.95 E-value=66 Score=40.75 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhch
Q 045616 298 LARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSD 352 (671)
Q Consensus 298 L~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~ 352 (671)
.--||...+.....+++.+|.=+.+=.-+..--+|-.-+|.+.+.++..+|.+-.
T Consensus 505 aesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~ 559 (1293)
T KOG0996|consen 505 AESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELK 559 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3346666666777777777777777777777777777788888888888887753
No 54
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=82.71 E-value=1.3e+02 Score=38.50 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhhhHHHhh
Q 045616 306 KSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQ 385 (671)
Q Consensus 306 Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk 385 (671)
|.++..|-+.++.=.+.-++.+++-..=+.|...-++..+.|+.++.+... +--++|=.|-+ ++.+..+-.
T Consensus 1653 ~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~---~a~~kl~~l~d------Le~~y~~~~ 1723 (1758)
T KOG0994|consen 1653 KEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLG---QANEKLDRLKD------LELEYLRNE 1723 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------HHHHHhhhh
Confidence 334444444444444444445555555555555555556666666555441 11112211211 233344445
Q ss_pred hcccchhhHHHHhhHHHHHHHHhh
Q 045616 386 YGLSEKNSIVDKLGFEIEAYLQAK 409 (671)
Q Consensus 386 ~~leeK~s~vdkL~~elEaFL~~k 409 (671)
-+|+.|-++|..|..+|+..|+.-
T Consensus 1724 ~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1724 QALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 567788888999999999888764
No 55
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.32 E-value=33 Score=41.71 Aligned_cols=115 Identities=18% Similarity=0.323 Sum_probs=74.3
Q ss_pred ccccccccccccchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhH-----H
Q 045616 183 KGRVGESRYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIA-----E 257 (671)
Q Consensus 183 k~R~~e~~~~L~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla-----E 257 (671)
-||+.|+...++|-++.+.+++.-. -..||-|+-|+.+|..-+.-...|..|++--.+.+...--... -
T Consensus 457 s~kl~Dvr~~~tt~kt~ie~~~~q~------e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~ 530 (1118)
T KOG1029|consen 457 SGKLQDVRVDITTQKTEIEEVTKQR------ELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRK 530 (1118)
T ss_pred hhhhhhheeccchHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHH
Confidence 3788899999999888887776542 2456788888888888888888888888655544433211111 1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHH
Q 045616 258 DKLIRKSKEQDRIHAAVQSVRDELEDERKLRK-RSESLHRKLARELSE 304 (671)
Q Consensus 258 EK~awKsKE~eki~aai~slk~ELe~ERk~Rr-r~E~ln~KL~~ELsE 304 (671)
.-+-....+++-|+.+|.+-.+||+.|..... .++.+|--| +||.+
T Consensus 531 s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~ql-kelk~ 577 (1118)
T KOG1029|consen 531 SELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQL-KELKE 577 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHH
Confidence 11223345567788888888888888866543 344555443 34443
No 56
>PHA02562 46 endonuclease subunit; Provisional
Probab=80.91 E-value=1e+02 Score=34.53 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDL 251 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l 251 (671)
+..|+.|++.....+..|..+....+.++..+
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444
No 57
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.89 E-value=75 Score=34.40 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=61.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 045616 213 HASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSE 292 (671)
Q Consensus 213 ~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E 292 (671)
|.++--+=.-|.++|+++..+.+.|+.+-+..+.|++.+..++..-.. .-- ..+..|.++|..=+ -.-|
T Consensus 40 QegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~-q~y-------~q~s~Leddlsqt~---aike 108 (333)
T KOG1853|consen 40 QEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRV-QFY-------QQESQLEDDLSQTH---AIKE 108 (333)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHH---HHHH
Confidence 555556677889999999999999999988888887777666533221 111 11223333333222 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHhhcc
Q 045616 293 SLHRKLARELSEVKSTLSNALRELEGERRSRK-LLEELCDEFAIGIK 338 (671)
Q Consensus 293 ~ln~KL~~ELsE~Kss~~~alkelE~ERKaRe-llE~vCDELAkgI~ 338 (671)
.+ +|..+||. ++-.+||+-+++.+ .+|++-..|-..|.
T Consensus 109 ql-~kyiReLE-------QaNDdLErakRati~sleDfeqrLnqAIE 147 (333)
T KOG1853|consen 109 QL-RKYIRELE-------QANDDLERAKRATIYSLEDFEQRLNQAIE 147 (333)
T ss_pred HH-HHHHHHHH-------HhccHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 22 34445553 34456666666655 35666655555543
No 58
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.41 E-value=1.4e+02 Score=37.86 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 045616 222 ALKTELDHARVKIKELLRDQQADRHEMDDLMKQI 255 (671)
Q Consensus 222 aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql 255 (671)
.|..++...+..|+++..+-.....+++.+...+
T Consensus 892 el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 892 ELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3334444444444444444444444444443333
No 59
>PRK04863 mukB cell division protein MukB; Provisional
Probab=80.21 E-value=1.2e+02 Score=39.47 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 045616 308 TLSNALRELEGERRSRKLLEELC 330 (671)
Q Consensus 308 s~~~alkelE~ERKaRellE~vC 330 (671)
.+..-+..|+......+-.+.+|
T Consensus 408 elQ~el~q~qq~i~~Le~~~~~~ 430 (1486)
T PRK04863 408 VQQTRAIQYQQAVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455566666666677777
No 60
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=79.95 E-value=1.8e+02 Score=36.78 Aligned_cols=65 Identities=12% Similarity=0.334 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH---HHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 045616 221 KALKTELDHARVKIKELLRDQQADRHEMDDLM---KQIAEDKLIRKSKEQDRIHAAVQSVRDELEDER 285 (671)
Q Consensus 221 ~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~---KqlaEEK~awKsKE~eki~aai~slk~ELe~ER 285 (671)
++...+++.++..+.++..+-+..+.++..+. .++..+...++.....++...+..+..+|..-.
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 631 KQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444332 233334444555555566666666666555433
No 61
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=78.96 E-value=84 Score=32.48 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 045616 298 LARELSEVKSTLSNALRELEGERRS 322 (671)
Q Consensus 298 L~~ELsE~Kss~~~alkelE~ERKa 322 (671)
+..+|..+..||+...+-||+=|..
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQKEV 105 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7788899999999999999876544
No 62
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.90 E-value=75 Score=37.43 Aligned_cols=129 Identities=18% Similarity=0.284 Sum_probs=79.8
Q ss_pred cccccccccccccc--------cchHHHHHHHHHhhcccccC---cccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 045616 180 LDFKGRVGESRYNL--------KTSTELLKVLNRIWSLEEQH---ASNVSLIKALKTELDHARVKIKELLRDQQADRHEM 248 (671)
Q Consensus 180 l~~k~R~~e~~~~L--------~TS~ELlkVLnrIW~leeq~---~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~ei 248 (671)
-.+|+|+.+...++ +|..+|.--|+-+ +... .+.==..++|+.-+...++-+.++..-.+..-+.|
T Consensus 220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~---ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l 296 (581)
T KOG0995|consen 220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMINER---EKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKL 296 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 56888887665544 3445555555533 2222 11122345577788888888888887765555444
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 045616 249 DDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLH---RKLARELSEVKSTLSNALREL 316 (671)
Q Consensus 249 e~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln---~KL~~ELsE~Kss~~~alkel 316 (671)
+ ++.+|- ..|--|.++|+..++.|+.-++--+=.=...|.+| -+|-++|.++++.+....|+.
T Consensus 297 ~----~l~~Ei-e~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 297 E----MLKSEI-EEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred H----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 444442 23456788888888888888765444444444444 478899998887776666554
No 63
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=78.33 E-value=5.4 Score=42.76 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=24.9
Q ss_pred HHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhh
Q 045616 319 ERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNW 355 (671)
Q Consensus 319 ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~ 355 (671)
..+.=+-||+-+++|.++|.+.+.|...|.++-.+.|
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~ 98 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYW 98 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445677788888888888888887776644333
No 64
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=76.64 E-value=50 Score=33.96 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccc--cHHHHHHH
Q 045616 270 IHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKD--YDQELHAL 347 (671)
Q Consensus 270 i~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~e--dkaEVe~L 347 (671)
|..-|..+..+++..|| ....-+.|+.+.+.++-.++.+ |+..-+..|+|+=+--.. ++.++..+
T Consensus 91 ~~~eL~~l~~~~e~~RK---~~ke~~~k~~k~~~~a~~~leK----------AK~~Y~~~c~e~Ekar~~~~~~~~~~~~ 157 (234)
T cd07652 91 MSDELSSLAKTVEKSRK---SIKETGKRAEKKVQDAEAAAEK----------AKARYDSLADDLERVKTGDPGKKLKFGL 157 (234)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhccCCCccccccc
Confidence 44445566667766655 4677788999998887776644 555566778877222111 21111212
Q ss_pred hhhchhhhccCCccchhhHHhhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHH
Q 045616 348 KQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIE 403 (671)
Q Consensus 348 Kres~k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elE 403 (671)
+.. ..+.+ .||..|-|..+|+.+.-.+....+.++.|+.
T Consensus 158 k~~------------~~~~~-----~Ee~~~~K~~~A~~~Y~~~v~~~n~~q~e~~ 196 (234)
T cd07652 158 KGN------------KSAAQ-----HEDELLRKVQAADQDYASKVNAAQALRQELL 196 (234)
T ss_pred cch------------hhHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11111 2345566666777776666666666666654
No 65
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.57 E-value=1.7e+02 Score=37.67 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhccccHHHHHHHhhhch
Q 045616 325 LLEELCDEFAIGIKDYDQELHALKQKSD 352 (671)
Q Consensus 325 llE~vCDELAkgI~edkaEVe~LKres~ 352 (671)
-.|....--+..|++.+.-|++||.+..
T Consensus 1609 ~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1609 AAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445668888888888888754
No 66
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.20 E-value=31 Score=40.74 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLA 299 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 299 (671)
+.+|+.||++--.+|..|+++. |+|.|+|++=-++-+.-----...-+-.++.-++.|.-.-|.+-..
T Consensus 334 ~~~~~~~~~~~~Tr~Er~Er~~-------D~L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~----- 401 (852)
T KOG4787|consen 334 LELAESQVQHLNTKIERLEKTN-------DHLNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTI----- 401 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHH-----
Confidence 5678888888888888887763 8999999886555443222122233445666677666555443222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhh
Q 045616 300 RELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQM 379 (671)
Q Consensus 300 ~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWREERVQM 379 (671)
.++.+-+-++.-. +|.=+.-+..|.+|.-.-+..+-|+.. +--.|+.|-++.+++=||-
T Consensus 402 ~~~~~~~~~~s~~-------~r~L~~~~~~~~~~~~~~~s~~~Ei~~--------------~QA~M~E~~Dt~~~~dV~~ 460 (852)
T KOG4787|consen 402 SELERKNLELTTQ-------VKQLETKVTPKPNFVVPSGTTTTELRK--------------EQAQMNELKDTVFKSDVQK 460 (852)
T ss_pred HHHHHhcccHHHH-------HHHHhhccccchhhcCCCcchHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 2333333333333 444455678999998777766666641 2234555666666665553
No 67
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.92 E-value=2.1e+02 Score=36.22 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=8.2
Q ss_pred eeeEEEEEEeccCCC
Q 045616 28 TIKFSILIVGLCHPP 42 (671)
Q Consensus 28 ~~~~~~~~~~~~~~~ 42 (671)
+|.-..|+==.||..
T Consensus 41 ~I~sI~L~NFMCHsn 55 (1074)
T KOG0250|consen 41 KIESIHLTNFMCHSN 55 (1074)
T ss_pred eEEEEEEeeeccccc
Confidence 344444555667754
No 68
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=75.86 E-value=54 Score=39.50 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=28.7
Q ss_pred ecccccccceeeEEEEEEeccCCCccccccccccc-------------------cchHHHHHHHhhhccc
Q 045616 19 GFGYCQARATIKFSILIVGLCHPPEAHDSIIKENS-------------------HLSARKLAAALWEFHH 69 (671)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~vSARKLaAtLWEi~~ 69 (671)
.++||...-+-.-.|-|.+.-||--....|+|+.. ++.-|.+|-..|-.+-
T Consensus 287 ~~~~~~P~~~~~~~i~l~~~rHPll~~~~~Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~ 356 (782)
T PRK00409 287 ALKATFPLFNDEGKIDLRQARHPLLDGEKVVPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKS 356 (782)
T ss_pred HCCCccceEcCCCcEEEcCcCCceeccCceECceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHh
Confidence 35677654433344667788776542223443332 6677777766665554
No 69
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=75.69 E-value=54 Score=39.09 Aligned_cols=137 Identities=24% Similarity=0.222 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHH
Q 045616 265 KEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQEL 344 (671)
Q Consensus 265 KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEV 344 (671)
|+.++...-+-.+..+|+..+...-+.+..=.. +.+.+..|..-+..|..-+..-.-++.+|+-.-+.|...++++
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~----~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l 250 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKS----AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQEL 250 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 444555555555556665555444332222111 2222333333333444455566667777888888889999999
Q ss_pred HHHhhhchhhhccCCccchhhHHhhhhhhhhhhh-hhHHHhhhcccchh---hHHHHhhHHHHHHHHh
Q 045616 345 HALKQKSDKNWTGKGEQDHLILHISESWLDERMQ-MKLEEAQYGLSEKN---SIVDKLGFEIEAYLQA 408 (671)
Q Consensus 345 e~LKres~k~~~ee~eeER~MLqmAEvWREERVQ-MKL~eAk~~leeK~---s~vdkL~~elEaFL~~ 408 (671)
..|+++...... +.-..+--+-+.|..-+.| -.|.++...|-+|+ .+.-+|.++|..+...
T Consensus 251 ~~l~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 251 EELKAELKELND---QVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999988654441 3334455567888888884 55777888888898 8888899998877554
No 70
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.72 E-value=1.6e+02 Score=33.90 Aligned_cols=158 Identities=21% Similarity=0.253 Sum_probs=88.1
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHHHH--------------HhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHH---
Q 045616 209 LEEQHASNVSLIKALKTELDHARVKIKELLR--------------DQQADRHEMDDLMKQIAEDKLIRKSKEQDRIH--- 271 (671)
Q Consensus 209 leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~--------------E~~s~~~eie~l~KqlaEEK~awKsKE~eki~--- 271 (671)
|++.+..+--.-+.|+.|--+-..|++.|+. |....++||...+ +-|+..-+-+.+-+++
T Consensus 234 ledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~---eReasle~Enlqmr~qqle 310 (502)
T KOG0982|consen 234 LEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKK---EREASLEKENLQMRDQQLE 310 (502)
T ss_pred hhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4444433334446677776666666655543 2233334443332 2333333333333332
Q ss_pred ----------HHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHh----
Q 045616 272 ----------AAVQSVRDELEDER-KLRKRSESLHRKLARELSEVKSTLSNALRELEGERRS-RKLLEELCDEFAI---- 335 (671)
Q Consensus 272 ----------aai~slk~ELe~ER-k~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKa-RellE~vCDELAk---- 335 (671)
+-+.++.++|+.|+ |+=.++|.+--+|..|-.. +--....|.-.++||++ -+|||++-.||-.
T Consensus 311 eentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l-~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 311 EENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKL-RVRMNDILRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33566677777776 5666777776666655433 33444555556777765 4677777666521
Q ss_pred ---------h-----ccccHHHHHHHhhhchhhhccCCccchhh------HHhhhhh
Q 045616 336 ---------G-----IKDYDQELHALKQKSDKNWTGKGEQDHLI------LHISESW 372 (671)
Q Consensus 336 ---------g-----I~edkaEVe~LKres~k~~~ee~eeER~M------LqmAEvW 372 (671)
| .-+.+.||+.||++.-+.. +..+|+.| +|++--|
T Consensus 390 kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~--eqneelngtilTls~q~lkn~ 444 (502)
T KOG0982|consen 390 KLVLANPVRGRSSAREIELEQEVKRLRQPNRILS--EQNEELNGTILTLSTQFLKNW 444 (502)
T ss_pred HHHhhccccCchhHHHHHHHHHHHHhccccchhh--hhhhhhhhhhhhHHHHHHHHH
Confidence 1 2357789999999987665 35667655 3555555
No 71
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=74.64 E-value=77 Score=29.83 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh--HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQI--AEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRK 297 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql--aEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 297 (671)
+..|+.|+..+...+......-+..+.+++...+.. +.++-..----|-..-..|..++.++..-+.....+..--..
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~ 84 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAES 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888877777777665543 223322222233334445677777777766555555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045616 298 LARELSEVKSTLSNALRELE 317 (671)
Q Consensus 298 L~~ELsE~Kss~~~alkelE 317 (671)
...+|...+.+...--+.|+
T Consensus 85 a~~~l~~~e~sw~~qk~~le 104 (132)
T PF07926_consen 85 AKAELEESEASWEEQKEQLE 104 (132)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 44444444444444333333
No 72
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.46 E-value=1e+02 Score=31.26 Aligned_cols=59 Identities=24% Similarity=0.381 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchh
Q 045616 295 HRKLARELSEVK---STLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDK 353 (671)
Q Consensus 295 n~KL~~ELsE~K---ss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k 353 (671)
|++|..-|..+. ..+.+.++.|++.+.+-.-+..--..+-+.|.+.+-|-+.|.+...+
T Consensus 57 N~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~k 118 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEK 118 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444332 23344455555555554445555555555666666666666655443
No 73
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=74.04 E-value=60 Score=37.45 Aligned_cols=124 Identities=19% Similarity=0.185 Sum_probs=68.1
Q ss_pred ccCCCCCCCCCCCCCccchhhhhhhhhhhhhhhhhccCCCCCCCCcCCcCC-cccccccCCCCccCCCcccccccccccc
Q 045616 111 FLADPSPSSPEQPESASSLRRHIAQSLIQHHRAIERNNHALQPLSPASYGS-SMEMAPYNPAAAVTPTSSLDFKGRVGES 189 (671)
Q Consensus 111 ~l~dp~~~~~~qp~s~~s~rR~v~~sl~qh~r~~~~~~~alqp~Spas~~s-sme~~~~~~~~~~tpt~Sl~~k~R~~e~ 189 (671)
.-++|-|+|..+.++.|-.+-.+..+--+-.-. ...+...+.+.|-+.-| -|.+-.|..+ +.|+.|-+ |-|++++
T Consensus 116 ~n~~Pd~t~t~~~s~ks~~~~~~r~~se~~~~d-~~~~~~~~~~a~d~~~s~~~q~~d~~e~--~~~kdSQl-kvrlqe~ 191 (554)
T KOG4677|consen 116 YNQLPDPTSTYSLSSKSFFRGRTRPGSEQSLSD-ALSDTPAKSYAPDLGRSKGEQYRDYSED--WSPKDSQL-KVRLQEV 191 (554)
T ss_pred hccCCCCCCCccccccchhhhhcccchhhhccc-cccccchhhcccccccchhhhHhhHhhh--cccchhhH-HHHHHHH
Confidence 345666666666555332222222221111111 11112233444444333 2334555555 88888844 7889999
Q ss_pred cccccchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 045616 190 RYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQI 255 (671)
Q Consensus 190 ~~~L~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql 255 (671)
..-|++-.|-|++++ .+..|+.+|..|++-++ .++..+.....-|.+++
T Consensus 192 ~~ll~~Rve~le~~S--------------al~~lq~~L~la~~~~~---~~~e~~i~~~~~f~~r~ 240 (554)
T KOG4677|consen 192 RRLLKGRVESLERFS--------------ALRSLQDKLQLAEEAVS---MHDENVITAVLIFLKRT 240 (554)
T ss_pred HHHHHhhhHHHHHHH--------------HHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHH
Confidence 999999999999883 56677888888887654 23334444444444443
No 74
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=73.89 E-value=49 Score=39.83 Aligned_cols=57 Identities=19% Similarity=0.412 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 045616 224 KTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDE 280 (671)
Q Consensus 224 k~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~E 280 (671)
+.+++..+..+.++.+|-...+.+++...++|.++|..+..+.+++...+|+.++.|
T Consensus 524 ~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~ 580 (771)
T TIGR01069 524 EKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKE 580 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455555555555555444444444444444444433
No 75
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=73.75 E-value=37 Score=38.06 Aligned_cols=165 Identities=24% Similarity=0.295 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHhHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045616 217 VSLIKALKTELDHARVKIKELLRDQQADRH---EMDDLMKQIAEDKLI------RKSKEQDRIHAAVQSVRDELEDERKL 287 (671)
Q Consensus 217 ~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~---eie~l~KqlaEEK~a------wKsKE~eki~aai~slk~ELe~ERk~ 287 (671)
.|++.|+.. +-|--|+.|+.+++..-+ +=|+|.-.|.-|+.. +...|..|..-+-+-|--.|+.||+
T Consensus 106 ~s~LaAaE~---khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~- 181 (561)
T KOG1103|consen 106 ASLLAAAEK---KHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKK- 181 (561)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 355555442 345567777777765322 223333333322211 1111222333333445556788865
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--------------HHhhccccHHHHHHHhhhchh
Q 045616 288 RKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDE--------------FAIGIKDYDQELHALKQKSDK 353 (671)
Q Consensus 288 Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDE--------------LAkgI~edkaEVe~LKres~k 353 (671)
|-|.+.--|.-|- |.++.++ -|.-.|+-+||=++-.+ =-+|+. .++.|+ |
T Consensus 182 --RHeqis~mLilEc---Kka~~Ka---aEegqKA~ei~Lklekdksr~~k~eee~aaERerglq-teaqve-------k 245 (561)
T KOG1103|consen 182 --RHEQISLMLILEC---KKALLKA---AEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQ-TEAQVE-------K 245 (561)
T ss_pred --HHHHHHHHHHHHH---HHHHHHH---HHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccc-hHHHHH-------H
Confidence 3444444454433 3343333 34455666665444332 222221 234443 3
Q ss_pred hhccCCccchhhHHhhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHhhh
Q 045616 354 NWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKR 410 (671)
Q Consensus 354 ~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k~ 410 (671)
.. +|.+.||..|+ |+.=|+|.-|--|-+ -+.-|.+...++|+-+..-+
T Consensus 246 ~i-~EfdiEre~LR-Ael~ree~r~K~lKe-------EmeSLkeiVkdlEA~hQh~~ 293 (561)
T KOG1103|consen 246 LI-EEFDIEREFLR-AELEREEKRQKMLKE-------EMESLKEIVKDLEADHQHLR 293 (561)
T ss_pred HH-HHHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhhhhhcC
Confidence 33 45667777765 667777776644432 23445566667777665543
No 76
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=72.77 E-value=1.8e+02 Score=33.26 Aligned_cols=26 Identities=19% Similarity=0.056 Sum_probs=22.9
Q ss_pred CCccchhccCCCccchhhhhhhhhcc
Q 045616 564 NKEHDEVHGSNSNYMIDNLMRNHILL 589 (671)
Q Consensus 564 K~~~~~~~~~~s~~~~d~~~R~~~ls 589 (671)
=.|++...||+.+=++||+=..|++-
T Consensus 342 VvyA~~l~GYG~vvIldhG~gy~sly 367 (420)
T COG4942 342 VVYADWLRGYGLVVILDHGGGYHSLY 367 (420)
T ss_pred EEechhhccCceEEEEEcCCccEEEe
Confidence 46788899999999999999998884
No 77
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=72.75 E-value=1.2 Score=53.50 Aligned_cols=120 Identities=19% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKS--KEQDRIHAAVQSVRDELEDERKLRKRSESLHRK 297 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKs--KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 297 (671)
|.-|..+|+.+++.+..|.+-++..-..+..+..++.+....+-. ++.....+-|..|+.+|+.-.-..-.++.-|+.
T Consensus 358 leDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~ 437 (859)
T PF01576_consen 358 LEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQ 437 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344666777777777777776666666555555555443322222 223345556777888888887777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Q 045616 298 LARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKD 339 (671)
Q Consensus 298 L~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~e 339 (671)
|..||.++...+..+-+.+-.=.|++..||.--+|+-..+.+
T Consensus 438 L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE 479 (859)
T PF01576_consen 438 LQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEE 479 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887665554333222223333344444444444333
No 78
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=72.71 E-value=12 Score=34.62 Aligned_cols=72 Identities=29% Similarity=0.464 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 279 DELEDERKLRKRSESLHRKLARELSEVKSTL-SNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 279 ~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~-~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
.+|..|+..|..+|....++-.||.+.-.++ ..|=+=.-.+|+.|..+|.=-+.|-+.+.+-+..++.|..+
T Consensus 1 ~~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~q 73 (100)
T PF06428_consen 1 KELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQ 73 (100)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999986665 66666668899999999888888888877766555544433
No 79
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.05 E-value=1.8e+02 Score=36.68 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhHHhhhhhh--------------
Q 045616 308 TLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWL-------------- 373 (671)
Q Consensus 308 s~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWR-------------- 373 (671)
-++..-.+++..++.|.+...+-.++-..|.+-+.|+..++-+-..... ++++.-.+|+..=-
T Consensus 308 ~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~---ee~~~~~rl~~l~~~~~~l~~Kqgr~sq 384 (1200)
T KOG0964|consen 308 KIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVD---EEKRLKKRLAKLEQKQRDLLAKQGRYSQ 384 (1200)
T ss_pred hhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3555666778889999999999999999999999999999988766652 56777777775432
Q ss_pred -------hhhhhhhHHHhhhcccchhhHHHHhhHHHHH
Q 045616 374 -------DERMQMKLEEAQYGLSEKNSIVDKLGFEIEA 404 (671)
Q Consensus 374 -------EERVQMKL~eAk~~leeK~s~vdkL~~elEa 404 (671)
|.=+.-.+.+-+-.+.++...-+.|+.||++
T Consensus 385 Fssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~ 422 (1200)
T KOG0964|consen 385 FSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIED 422 (1200)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3334555555555555555555555555443
No 80
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.92 E-value=94 Score=29.62 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIA 256 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla 256 (671)
|-|+.+..|+...+.++..|.+++.....||-.|++...
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999988888887763
No 81
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=71.81 E-value=94 Score=31.53 Aligned_cols=104 Identities=19% Similarity=0.238 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKL 298 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 298 (671)
+|.-++..|..++..+-.++..++...++++.+-..+ .-| .++...||+.=.+ =|
T Consensus 32 ~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~----~~~----~~~A~~Al~~G~E-----------------dL 86 (219)
T TIGR02977 32 IIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQV----ADW----QEKAELALSKGRE-----------------DL 86 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----HHHHHHHHHCCCH-----------------HH
Confidence 3566666777777777777777766666655544443 223 2344444443222 26
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 299 ARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 299 ~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
|++..+-|..+...+..|+.+-.. +...+++|-..|.+.+.+++.+|..
T Consensus 87 Ar~Al~~k~~~~~~~~~l~~~~~~---~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 87 ARAALIEKQKAQELAEALERELAA---VEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655443 7777888888888888888777655
No 82
>PRK04863 mukB cell division protein MukB; Provisional
Probab=71.70 E-value=2.6e+02 Score=36.63 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=14.6
Q ss_pred ceeeecccccccceeeEEEEEEeccCCC
Q 045616 15 LVFLGFGYCQARATIKFSILIVGLCHPP 42 (671)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (671)
|.+.+|++=... +|.|.--+++|+.++
T Consensus 10 l~l~N~~~~~~~-~~~f~~~~~~l~G~N 36 (1486)
T PRK04863 10 LTLVNWNGFFAR-TFDLDELVTTLSGGN 36 (1486)
T ss_pred EEEecccCccce-EEEecCCeEEEECCC
Confidence 445555555544 677665555554444
No 83
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=71.63 E-value=87 Score=31.32 Aligned_cols=66 Identities=32% Similarity=0.534 Sum_probs=44.6
Q ss_pred HHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 045616 251 LMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEEL 329 (671)
Q Consensus 251 l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~v 329 (671)
+..|| +||...|..|.++ -.++|-+.|+++.+.-+.+-+.+..|....+ -|+.+.-+|...|.+.+
T Consensus 63 i~~Qi-eEk~r~k~~E~er------r~~EE~~EE~Rl~rere~~q~~~E~E~~~~~------~KEe~~~~k~~~l~e~~ 128 (157)
T PF15236_consen 63 IKQQI-EEKRRQKQEEEER------RRREEEEEEERLAREREELQRQFEEEQRKQR------EKEEEQTRKTQELYEAM 128 (157)
T ss_pred HHHHH-HHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 34444 7776666666655 4567777888888888888888888876433 45666667777776644
No 84
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=71.30 E-value=67 Score=29.50 Aligned_cols=72 Identities=24% Similarity=0.385 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhhHHHHHHHHH
Q 045616 265 KEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVK-------------STLSNALRELEGERRSRKLLEELCD 331 (671)
Q Consensus 265 KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~K-------------ss~~~alkelE~ERKaRellE~vCD 331 (671)
.+-.++..++.++.++|.+.++-|.++-..|+.|+.|+-+.+ ..+.+.-++|+.+|+...+|-.|--
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q 82 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888899999999999999999999999999987532 3344444555555555555555554
Q ss_pred HHHhh
Q 045616 332 EFAIG 336 (671)
Q Consensus 332 ELAkg 336 (671)
-+.-|
T Consensus 83 ~lI~g 87 (106)
T PF05837_consen 83 ALIVG 87 (106)
T ss_pred HHHHh
Confidence 44444
No 85
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.21 E-value=2.1e+02 Score=33.44 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=9.4
Q ss_pred cceeeecccccccceeeEE
Q 045616 14 NLVFLGFGYCQARATIKFS 32 (671)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~ 32 (671)
.|.+-+||-=..+.+|.|.
T Consensus 5 ~l~l~nf~~~~~~~~~~~~ 23 (650)
T TIGR03185 5 QLTLENFGPYRGRQTFDLS 23 (650)
T ss_pred EEEEeceEEEcCCceeeee
Confidence 4555666533333455554
No 86
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=70.79 E-value=83 Score=34.23 Aligned_cols=20 Identities=35% Similarity=0.410 Sum_probs=14.7
Q ss_pred hhhhhhHHHHHHHHhHHHHH
Q 045616 241 QQADRHEMDDLMKQIAEDKL 260 (671)
Q Consensus 241 ~~s~~~eie~l~KqlaEEK~ 260 (671)
+.....++.+++++|.+.|.
T Consensus 18 r~~~~~e~~~l~~~f~elke 37 (291)
T KOG4466|consen 18 RANEESEMSNLEKQFSELKE 37 (291)
T ss_pred hhhhhhhhhhhhhhhhHHHH
Confidence 34445678899999988874
No 87
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.66 E-value=1.3e+02 Score=37.01 Aligned_cols=64 Identities=23% Similarity=0.403 Sum_probs=43.9
Q ss_pred hhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhc
Q 045616 288 RKRSESLHRKL---ARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKS 351 (671)
Q Consensus 288 Rrr~E~ln~KL---~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres 351 (671)
-.++|.||-|+ ---|.++..-+.++..++|.=++.|+++-.--++|-..|.|+.+.+-.|-.|.
T Consensus 443 ~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek 509 (1118)
T KOG1029|consen 443 QQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK 509 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34556666664 23455666667777777888888888888888888888888777666554443
No 88
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=70.18 E-value=1.4e+02 Score=38.36 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKL 298 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 298 (671)
.+..++.+|+.++.++.+...+......++..+..++..=...-+ ...+.|.+-|+.++.+|+.=++-+..++..-..+
T Consensus 876 ~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~-~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a 954 (1353)
T TIGR02680 876 RAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVG-AMVDEIRARLAETRAALASGGRELPRLAEALATA 954 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554444444444444443333321111100 0134455555555555554444343343333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 045616 299 ARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIG 336 (671)
Q Consensus 299 ~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkg 336 (671)
..++..+...+..+-..+..+...+.....+-+||+.|
T Consensus 955 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~ 992 (1353)
T TIGR02680 955 EEARGRAEEKRAEADATLDERAEARDHAIGQLREFALT 992 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444444444444444555555555666655
No 89
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=70.01 E-value=1.5e+02 Score=31.36 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLR 239 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~ 239 (671)
+..|+.++.++++++..|..
T Consensus 83 l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 83 AAELESQVLRLEAEVARLRA 102 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444433
No 90
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=69.78 E-value=1.3e+02 Score=30.39 Aligned_cols=91 Identities=20% Similarity=0.362 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh----------------hhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQAD----------------RHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDEL 281 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~----------------~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL 281 (671)
-||..|+..+.+-|.++.+|++--.+. -.+|+.++.+|.||+. ++.+ +..+-.-+++.|
T Consensus 16 ~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqq--R~~~---L~qvN~lLReQL 90 (182)
T PF15035_consen 16 QLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQ--RSEE---LAQVNALLREQL 90 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHH--hHHH---HHHHHHHHHHHH
Confidence 679999999999999999998865221 2578889999988864 3433 333444456667
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 282 EDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGER 320 (671)
Q Consensus 282 e~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ER 320 (671)
|..+ ..|..|..||.-+...+..+..+|+...
T Consensus 91 Eq~~-------~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 91 EQAR-------KANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554 4688888888877777777777776544
No 91
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=69.44 E-value=1.4e+02 Score=36.68 Aligned_cols=75 Identities=25% Similarity=0.263 Sum_probs=34.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhhhHHHhhhcccc-hh
Q 045616 314 RELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSE-KN 392 (671)
Q Consensus 314 kelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~lee-K~ 392 (671)
..+|+||+-+++--.+...=+..|.+--.-+..+--... .+.-+ .||--++.-|- .|--+-+-|++|.. ||
T Consensus 1001 ~~~Eqer~D~~la~RlA~sd~~~v~d~~~~~~~~v~~~~-----~m~P~-k~l~r~~~v~a--~~aa~~~~KYDl~~wky 1072 (1259)
T KOG0163|consen 1001 NQLEQERRDHELALRLANSDGGQVEDSPPVIRALVNDAS-----PMGPN-KMLIRSENVRA--QQAALGKQKYDLSKWKY 1072 (1259)
T ss_pred hHHHHHHHHHHHHHHHhhccCCccccccHHHHhhccccC-----CCCCc-cccccchhhhH--HHHHhccCccccccccH
Confidence 347777777766655555544444443332232222211 11222 23332332221 13334455777776 77
Q ss_pred hHHH
Q 045616 393 SIVD 396 (671)
Q Consensus 393 s~vd 396 (671)
+.|-
T Consensus 1073 aeLR 1076 (1259)
T KOG0163|consen 1073 AELR 1076 (1259)
T ss_pred HHHH
Confidence 7653
No 92
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=68.82 E-value=57 Score=36.87 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHH--------HhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKL--------IRKSKEQDRIHAAVQSVRDELEDERKLRK 289 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~--------awKsKE~eki~aai~slk~ELe~ERk~Rr 289 (671)
-|.+|+.+|+..+..+.++..+.......+..| ..+.+ .. .|....-..+.+.++.+.+++..-+..++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFL-EDIRE-GLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR 148 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh-hhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888777777666433 44432 11 11122335566666666666654443333
No 93
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.73 E-value=1.4e+02 Score=30.30 Aligned_cols=19 Identities=21% Similarity=0.643 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045616 268 DRIHAAVQSVRDELEDERK 286 (671)
Q Consensus 268 eki~aai~slk~ELe~ERk 286 (671)
..++..|+.++.+++..|+
T Consensus 73 ~~l~~~i~~~~~~i~~~r~ 91 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKRE 91 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555543
No 94
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=68.40 E-value=53 Score=28.45 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELED 283 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ 283 (671)
+.|.+|+.-|+++-.++.-...+...-..|=+.++++|.+ +.-+-.++++-+..++.||+.
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~-----a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD-----AYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999988888887777777888888765 245667777777777777653
No 95
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.01 E-value=2.1e+02 Score=34.02 Aligned_cols=45 Identities=22% Similarity=0.155 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHH
Q 045616 301 ELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELH 345 (671)
Q Consensus 301 ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe 345 (671)
.+-+++-.+..+..+++.......=+...-.|+-...+.++.|+-
T Consensus 426 l~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~ 470 (581)
T KOG0995|consen 426 LLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELK 470 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677777777777777777777777777777776665554
No 96
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=67.93 E-value=1.4e+02 Score=30.23 Aligned_cols=118 Identities=22% Similarity=0.283 Sum_probs=65.6
Q ss_pred chHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHH
Q 045616 195 TSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAV 274 (671)
Q Consensus 195 TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai 274 (671)
+..++=.-||-| ...|+.+|+.|+.|+..-+.......+.-.....+...|.. -+
T Consensus 10 af~~iK~YYndI------T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~e-------------------pL 64 (201)
T PF13851_consen 10 AFQEIKNYYNDI------TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSE-------------------PL 64 (201)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------------------HH
Confidence 345555666766 45789999999999988777655544443222222222222 22
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH
Q 045616 275 QSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYD 341 (671)
Q Consensus 275 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edk 341 (671)
..+..|.+ .+++.+.. ..|.-..|..+|+-+...-++|..-+-.-++|+.=|..+-++-.+..
T Consensus 65 ~~a~~e~~---eL~k~L~~-y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 65 KKAEEEVE---ELRKQLKN-YEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111 23333332 33444555666666666666666667777777777777666654433
No 97
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.77 E-value=1.1e+02 Score=31.45 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=18.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 214 ASNVSLIKALKTELDHARVKIKELLRD 240 (671)
Q Consensus 214 ~s~~Slv~aLk~EL~~Ar~~I~eL~~E 240 (671)
++....+..|+.||..+++++.++.++
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344466778888888888777776544
No 98
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=66.84 E-value=1e+02 Score=35.27 Aligned_cols=34 Identities=29% Similarity=0.260 Sum_probs=26.3
Q ss_pred CCccchhhHHhhhhhhhhhhhhhHHHhhhcccch
Q 045616 358 KGEQDHLILHISESWLDERMQMKLEEAQYGLSEK 391 (671)
Q Consensus 358 e~eeER~MLqmAEvWREERVQMKL~eAk~~leeK 391 (671)
.++.+-.|+-+-|.-|+-|.|-.|++|..+|.-|
T Consensus 106 ~~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~ 139 (459)
T KOG0288|consen 106 KAEFENAELALREMRRKMRIAERLAEALKDLGLK 139 (459)
T ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHhhhcchh
Confidence 4678888888888888888888888887666554
No 99
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=66.28 E-value=48 Score=38.33 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 045616 221 KALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRK 297 (671)
Q Consensus 221 ~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 297 (671)
.-|+.-+|.||++-++...|+...+ .-+-+|+ ..-+++-..|-+|||+|.-++.-++|
T Consensus 510 ~llkva~dnar~qekQiq~Ek~ELk-------md~lrer------------elreslekql~~ErklR~~~qkr~kk 567 (641)
T KOG3915|consen 510 GLLKVAIDNARAQEKQIQLEKTELK-------MDFLRER------------ELRESLEKQLAMERKLRAIVQKRLKK 567 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888777776652222 1222222 23345556677788888766654444
No 100
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=66.06 E-value=2.5e+02 Score=32.21 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 045616 224 KTELDHARVKIKELLRDQQ 242 (671)
Q Consensus 224 k~EL~~Ar~~I~eL~~E~~ 242 (671)
..-+.+|+.+|..|.++-.
T Consensus 250 ~~~i~~a~~~i~~L~~~l~ 268 (582)
T PF09731_consen 250 NSLIAHAKERIDALQKELA 268 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445566666666655443
No 101
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=65.34 E-value=1.9e+02 Score=34.33 Aligned_cols=128 Identities=20% Similarity=0.289 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh--HHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 045616 221 KALKTELDHARVKIKELLRDQQADRHEMDDLMKQI--AEDKLIRKSKEQ---DRIHAAVQSVRDELEDERKLRKRSESLH 295 (671)
Q Consensus 221 ~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql--aEEK~awKsKE~---eki~aai~slk~ELe~ERk~Rrr~E~ln 295 (671)
..|+.|+.+-+..+..|...-+..-.+.+.|.+-. -++++.---+.- .--..-...|-+.+.-+|-.=-|+-+-|
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN 162 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQN 162 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhH
Confidence 47788888777777777765544433333332221 122221100000 0000123334445555666666778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHh
Q 045616 296 RKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALK 348 (671)
Q Consensus 296 ~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LK 348 (671)
+.|..-|.|++.+|.+...+-=.=.-+-..-..|-.||++..++++.++..++
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887655211112223333344455555555555555554
No 102
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=65.14 E-value=85 Score=38.66 Aligned_cols=113 Identities=21% Similarity=0.314 Sum_probs=83.8
Q ss_pred HHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH--HHHhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 045616 204 NRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDL--MKQIAEDKLIRKSKEQDRIHAAVQSVRDEL 281 (671)
Q Consensus 204 nrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l--~KqlaEEK~awKsKE~eki~aai~slk~EL 281 (671)
|+|.+++-.... --+.+.||+.|..+...|-.+.-...+..++| ++--++-++.+---++.++-+.|+.+.+-|
T Consensus 400 n~if~~e~~~~d----he~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sl 475 (1265)
T KOG0976|consen 400 NHIFRLEQGKKD----HEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSL 475 (1265)
T ss_pred Hhhhhhhhccch----hHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhCh
Confidence 566666554322 24568999999999999999888888888876 566666666666667779999999999999
Q ss_pred HHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 282 EDERKLRKRSESL---HRKLARELSEVKSTLSNALRELEGER 320 (671)
Q Consensus 282 e~ERk~Rrr~E~l---n~KL~~ELsE~Kss~~~alkelE~ER 320 (671)
+.-||.-+..|.| |.|-++-.+++|-++.+.--||-.|+
T Consensus 476 e~qrKVeqe~emlKaen~rqakkiefmkEeiQethldyR~el 517 (1265)
T KOG0976|consen 476 EKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSEL 517 (1265)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998876 44555556666766666666665443
No 103
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.00 E-value=2.5e+02 Score=35.27 Aligned_cols=92 Identities=25% Similarity=0.377 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLA 299 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 299 (671)
|+-|..+|+-+|.+-.| ....=.|+|.+.=|+ |--..||+| |-..+-+|+.||-++|+.-+.+-..-.++.
T Consensus 233 vrdLtEkLetlR~kR~E----Dk~Kl~Elekmkiql-eqlqEfkSk----im~qqa~Lqrel~raR~e~keaqe~ke~~k 303 (1243)
T KOG0971|consen 233 VRDLTEKLETLRLKRAE----DKAKLKELEKMKIQL-EQLQEFKSK----IMEQQADLQRELKRARKEAKEAQEAKERYK 303 (1243)
T ss_pred HHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555543222 111112333332233 334457764 455567899999999999999999999999
Q ss_pred HHHHHHHHHHHHHH--HHHHHHH
Q 045616 300 RELSEVKSTLSNAL--RELEGER 320 (671)
Q Consensus 300 ~ELsE~Kss~~~al--kelE~ER 320 (671)
.||+|+--++-=+. ||+-.||
T Consensus 304 ~emad~ad~iEmaTldKEmAEER 326 (1243)
T KOG0971|consen 304 EEMADTADAIEMATLDKEMAEER 326 (1243)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999877765443 3444444
No 104
>PRK14154 heat shock protein GrpE; Provisional
Probab=64.71 E-value=1.3e+02 Score=31.31 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=42.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHH
Q 045616 213 HASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDR 269 (671)
Q Consensus 213 ~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~ek 269 (671)
|-+..+-+..|..+|...+.++.+|...-.....+++.+.|....|+...+..--++
T Consensus 47 ~~~~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~ 103 (208)
T PRK14154 47 EGLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQ 103 (208)
T ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556788999999999999999987777777888888888877765444433333
No 105
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=64.65 E-value=1.3e+02 Score=32.57 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=46.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhhhHHHhhhcccchh
Q 045616 313 LRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKN 392 (671)
Q Consensus 313 lkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~ 392 (671)
..|+-+---+|.-||.+|.||-+.-...+.|...+.++- +.-|.- ..+..|.-|.|....+++..
T Consensus 63 ~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ee--------e~kR~e-------l~~kFq~~L~dIq~~~ee~~ 127 (309)
T PF09728_consen 63 QSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREE--------EEKRKE-------LSEKFQATLKDIQAQMEEQS 127 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 334444567889999999999999887777665444432 222222 14566777777777777665
Q ss_pred hHHHHhhHH
Q 045616 393 SIVDKLGFE 401 (671)
Q Consensus 393 s~vdkL~~e 401 (671)
..-.++..|
T Consensus 128 ~~~~k~~~e 136 (309)
T PF09728_consen 128 ERNIKLREE 136 (309)
T ss_pred chhHHHHHH
Confidence 444443333
No 106
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=64.14 E-value=3.6e+02 Score=36.19 Aligned_cols=58 Identities=17% Similarity=0.337 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH---HHHHHhHHHHHHhhhhHHHHHHH
Q 045616 215 SNVSLIKALKTELDHARVKIKELLRDQQADRHEMD---DLMKQIAEDKLIRKSKEQDRIHA 272 (671)
Q Consensus 215 s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie---~l~KqlaEEK~awKsKE~eki~a 272 (671)
++..-+.-|..+++..+.-|-.|..+-..-+.+|. .=++.+.+|---||.+-++-+..
T Consensus 1240 ~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1240 ANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333333333332 22567778888888877765544
No 107
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=64.11 E-value=1.3e+02 Score=28.45 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=31.4
Q ss_pred chHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045616 195 TSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQ 241 (671)
Q Consensus 195 TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~ 241 (671)
+......|+|=||+|.-++-.++..-..|...+..-+..+..|....
T Consensus 29 ~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~ 75 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDV 75 (151)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45677889999998877777776666666666655555555555443
No 108
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=64.05 E-value=46 Score=31.31 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=37.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhh
Q 045616 213 HASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSK 265 (671)
Q Consensus 213 ~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsK 265 (671)
|+.++-.|..|+.|+...+..|.+|..+..+.+. .|...+..|...
T Consensus 54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~-------~l~~~e~sw~~q 99 (132)
T PF07926_consen 54 HAEDIKELQQLREELQELQQEINELKAEAESAKA-------ELEESEASWEEQ 99 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHH
Confidence 8888999999999999999999999888655554 566777778764
No 109
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.52 E-value=2.3e+02 Score=34.37 Aligned_cols=160 Identities=20% Similarity=0.262 Sum_probs=0.0
Q ss_pred cccccccccchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhH---------
Q 045616 186 VGESRYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIA--------- 256 (671)
Q Consensus 186 ~~e~~~~L~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla--------- 256 (671)
+++--+++..+.-++.-+++.|+.+.++++- |--+..-|-+-...++.+.+.+.....++..|++.+-
T Consensus 348 l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~---ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl 424 (716)
T KOG4593|consen 348 LKNKNSTVTSPARGLERARQLLKEELKQVAG---ITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRL 424 (716)
T ss_pred hccccccccCcccchHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q ss_pred HHHHHhhhhHHHHHHHHH-----HHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 045616 257 EDKLIRKSKEQDRIHAAV-----QSVRDELEDERKLRKRSESLHR--KLARELSEVKSTLSNALRELEGERRSRKLLEEL 329 (671)
Q Consensus 257 EEK~awKsKE~eki~aai-----~slk~ELe~ERk~Rrr~E~ln~--KL~~ELsE~Kss~~~alkelE~ERKaRellE~v 329 (671)
.++.-.-.|+.+.+++.| ..+..|-..|--.+.=....++ ||..++.+.++.+...-+++...|+.++++-+-
T Consensus 425 ~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~ 504 (716)
T KOG4593|consen 425 AEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREK 504 (716)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q ss_pred HHHHHhhccccHHHHHHHh
Q 045616 330 CDEFAIGIKDYDQELHALK 348 (671)
Q Consensus 330 CDELAkgI~edkaEVe~LK 348 (671)
-+.+.+++...+.|=..|+
T Consensus 505 i~~~~ke~~~Le~En~rLr 523 (716)
T KOG4593|consen 505 IEQYLKELELLEEENDRLR 523 (716)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 110
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=63.34 E-value=1.6e+02 Score=28.96 Aligned_cols=88 Identities=23% Similarity=0.372 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKL- 298 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL- 298 (671)
|-+|..||+.++..--.++.+--..+.+|..|--++. .+..-+..+..||..=|.-+..+...=.+.
T Consensus 26 v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~------------~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 26 VESLERELEMSQENKECLILDAENSKAEIETLEEELE------------ELTSELNQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666555555555555555555444331 122223333333333332222222222222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHH
Q 045616 299 --ARELSEVKSTLSNALRELEGE 319 (671)
Q Consensus 299 --~~ELsE~Kss~~~alkelE~E 319 (671)
+.||.-..+++.+.++++|.|
T Consensus 94 ~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 94 EKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555555666666666655
No 111
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=63.33 E-value=2.4 Score=50.97 Aligned_cols=139 Identities=22% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHH-HHHHhhh--hHHHHHHHHHHHHH
Q 045616 202 VLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAE-DKLIRKS--KEQDRIHAAVQSVR 278 (671)
Q Consensus 202 VLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaE-EK~awKs--KE~eki~aai~slk 278 (671)
..+..=.+++..--.+.-+..|..||..-|.++..|+..+......|..|--+|.+ |-.+.+. +.--++.+-|+.|-
T Consensus 677 ~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE 756 (859)
T PF01576_consen 677 EQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELE 756 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHH
Confidence 33444345666667778899999999999999999999999999999999888866 3334444 55567888899999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHH
Q 045616 279 DELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHAL 347 (671)
Q Consensus 279 ~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~L 347 (671)
.+|+.|.+-+..+...++|+-+=|.|+ .-.++.+||.-.-+.+++|.|-.-|..||..+++.
T Consensus 757 ~~Le~E~r~~~~~~k~~rk~er~~kEl-------~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eea 818 (859)
T PF01576_consen 757 EELESEQRRRAEAQKQLRKLERRVKEL-------QFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEA 818 (859)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999999998777654 34568899999999999999999999999888754
No 112
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=63.04 E-value=3.9e+02 Score=33.47 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDL 251 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l 251 (671)
+.+|.+||+++|-..++-..|++.-+++...|
T Consensus 367 l~~le~~~~e~q~~~qe~~~e~eqLr~elaql 398 (980)
T KOG0980|consen 367 LLALEGELQEQQREAQENREEQEQLRNELAQL 398 (980)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888877777777776666555544
No 113
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=62.83 E-value=2.2e+02 Score=30.59 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHhhccccH
Q 045616 269 RIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGER-------RSRKLLEELCDEFAIGIKDYD 341 (671)
Q Consensus 269 ki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ER-------KaRellE~vCDELAkgI~edk 341 (671)
++.+....|+.|+...|..-...+.... .||..+|..+...-.+++.-| ....-++.-.+++...+.+.+
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~e~~~~D~---~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~ 257 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVEEIESCDQ---EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELL 257 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555544444333333222 344444444444444444333 333333333444444444444
Q ss_pred HHHH
Q 045616 342 QELH 345 (671)
Q Consensus 342 aEVe 345 (671)
+++.
T Consensus 258 ~eI~ 261 (325)
T PF08317_consen 258 AEIA 261 (325)
T ss_pred HHHH
Confidence 4443
No 114
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=62.17 E-value=1.8e+02 Score=32.33 Aligned_cols=116 Identities=21% Similarity=0.285 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQ-DRIHAAVQSVRDELEDERKLRKRSESLHR 296 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~-eki~aai~slk~ELe~ERk~Rrr~E~ln~ 296 (671)
-+...|..=+..|+.++..|.............+++-|.|+-..-...+- ..+...+...+.-.+++.+.++.-+.-..
T Consensus 310 ~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~ 389 (432)
T smart00498 310 KFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRK 389 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666688899999999999988888899999988887653111111 35555555555555555555555556666
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHH
Q 045616 297 KLARELSEVKST-----LSNALRELEGERRSRKLLEELCDEF 333 (671)
Q Consensus 297 KL~~ELsE~Kss-----~~~alkelE~ERKaRellE~vCDEL 333 (671)
++++|..+-... -.+.+.+...++.....|..||.++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~ 431 (432)
T smart00498 390 QLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEEL 431 (432)
T ss_pred HHHHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhh
Confidence 677777665432 2345677788888888888888875
No 115
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=61.97 E-value=2.5e+02 Score=30.82 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=26.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhh
Q 045616 314 RELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNW 355 (671)
Q Consensus 314 kelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~ 355 (671)
.+....++...-+-+=-.+||.++.+|..++-.+-++.+.++
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~R 206 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELR 206 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444456778888888888777777766555
No 116
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.54 E-value=3.2e+02 Score=32.01 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHh
Q 045616 230 ARVKIKELLRDQQADRHEMDDLMKQI 255 (671)
Q Consensus 230 Ar~~I~eL~~E~~s~~~eie~l~Kql 255 (671)
.+.++.+|..+......+++.+-++|
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555
No 117
>PRK11637 AmiB activator; Provisional
Probab=61.29 E-value=2.6e+02 Score=30.91 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=6.2
Q ss_pred ccCCCccchhhh
Q 045616 571 HGSNSNYMIDNL 582 (671)
Q Consensus 571 ~~~~s~~~~d~~ 582 (671)
.||+..=+|||+
T Consensus 357 ~~~G~~vii~hg 368 (428)
T PRK11637 357 QGYGLVVVVEHG 368 (428)
T ss_pred CCcccEEEEEeC
Confidence 455554455554
No 118
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=61.06 E-value=1.1e+02 Score=36.41 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=12.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045616 261 IRKSKEQDRIHAAVQSVRDELEDERK 286 (671)
Q Consensus 261 awKsKE~eki~aai~slk~ELe~ERk 286 (671)
.|+.+|-+-...-|..|..+|+.+++
T Consensus 470 ~~~~rei~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 470 VRKDREIRARDRRIERLEKELEEKKK 495 (652)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 119
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=60.80 E-value=2.8e+02 Score=33.66 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=8.5
Q ss_pred HHHHHHHHhHHHHHH
Q 045616 247 EMDDLMKQIAEDKLI 261 (671)
Q Consensus 247 eie~l~KqlaEEK~a 261 (671)
+++.|+..|.+++..
T Consensus 517 ~~~~li~~l~~~~~~ 531 (782)
T PRK00409 517 KLNELIASLEELERE 531 (782)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666555543
No 120
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=60.47 E-value=1.6e+02 Score=32.96 Aligned_cols=118 Identities=27% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHH
Q 045616 264 SKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQE 343 (671)
Q Consensus 264 sKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaE 343 (671)
.+-+++|+...++-++-++.-+++-...--|-+|..-+--+ ..-+++|-+---+|.-||.||.||-+-+...+.|
T Consensus 21 ~~~eekik~L~~~~~d~~e~~~~v~~~~kvlq~k~~t~~ke-----k~~~Q~l~kt~larsKLeelCRelQr~nk~~keE 95 (391)
T KOG1850|consen 21 EKVEEKIKKLAESEKDNAELKIKVLDYDKVLQVKDLTEKKE-----KRNNQILLKTELARSKLEELCRELQRANKQTKEE 95 (391)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHH
Q 045616 344 LHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFE 401 (671)
Q Consensus 344 Ve~LKres~k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~e 401 (671)
-=.-.++ ++||+=+-.+- .|.-|-|...+|++-++..++|+.+
T Consensus 96 ~~~q~k~---------eEerRkea~~~------fqvtL~diqktla~~~~~n~klre~ 138 (391)
T KOG1850|consen 96 ACAQMKK---------EEERRKEAVEQ------FQVTLKDIQKTLAEGRSKNDKLRED 138 (391)
T ss_pred HHHHHHH---------HHHHHHHHHHH------HHhHHHHHHHHHHhcchhhHHHHHH
No 121
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=59.82 E-value=2.1e+02 Score=29.28 Aligned_cols=116 Identities=19% Similarity=0.284 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKL 298 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 298 (671)
-+.+.+.=|+.|.++...+.-.. ..+ .||.++... +|+.- -+-+.+.+..+..+|. ++|+.++.+|+.=
T Consensus 98 d~~~w~~al~na~a~lehq~~R~----~NL-eLl~~~g~n--aW~~~-n~~Le~~~~~le~~l~---~~k~~ie~vN~~R 166 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRL----ENL-ELLSKYGEN--AWLIH-NEQLEAMLKRLEKELA---KLKKEIEEVNRER 166 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHhHH--HHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 35666666666666554432221 223 367777664 57532 2344445555555553 4667777777643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHH
Q 045616 299 ARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELH 345 (671)
Q Consensus 299 ~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe 345 (671)
-..=.++..-+...-+....=-...--||-.|-+|-.+|.+.+++..
T Consensus 167 K~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 167 KRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333222222222222223344566677777655544444443
No 122
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=58.60 E-value=1.9e+02 Score=29.44 Aligned_cols=73 Identities=11% Similarity=0.252 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 278 RDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGER--RSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 278 k~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ER--KaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
.+.|+.=.+++..++.+-...-.+|.+++.-....+.+...+- ....+++++=.|+.+-+.+-+.+++..|.+
T Consensus 90 ~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~ 164 (204)
T PRK09174 90 AQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAK 164 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555544444433332 222344444445555555555555544444
No 123
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=57.99 E-value=3.1e+02 Score=30.67 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Q 045616 307 STLSNALRELEGERRSRKLLEELCDEFAIGIKD 339 (671)
Q Consensus 307 ss~~~alkelE~ERKaRellE~vCDELAkgI~e 339 (671)
.+..++|.|+++.|..+.-|+.+-.+++.++..
T Consensus 346 ~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~ 378 (412)
T PF04108_consen 346 SAYDSLLLEVERRRAVRDKMKKIIREANEELDK 378 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666666666555555555443
No 124
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=56.50 E-value=2.4e+02 Score=28.95 Aligned_cols=140 Identities=19% Similarity=0.265 Sum_probs=74.1
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh--HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045616 209 LEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQI--AEDKLIRKSKEQDRIHAAVQSVRDELEDERK 286 (671)
Q Consensus 209 leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql--aEEK~awKsKE~eki~aai~slk~ELe~ERk 286 (671)
|+......-.-|..|...|..|.....+..+--.-....+..+-..| +++| -+.+..-|..|..+|..=..
T Consensus 83 lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR-------~e~~E~ki~eLE~el~~~~~ 155 (237)
T PF00261_consen 83 LENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEER-------AEAAESKIKELEEELKSVGN 155 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhchhHHHHHHHHHHHHH
Confidence 34444444455666677777776666666554433333333333322 2232 33444445555555554444
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhh
Q 045616 287 LRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNW 355 (671)
Q Consensus 287 ~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~ 355 (671)
.-+.+|.--.+...-......-+...-..|..=-..-+..|.-|..|-+.|...+.++...|.+...+.
T Consensus 156 ~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 156 NLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333333333333333333333344566777788888888888888887777765555
No 125
>PRK14140 heat shock protein GrpE; Provisional
Probab=56.37 E-value=2.4e+02 Score=28.91 Aligned_cols=56 Identities=11% Similarity=0.204 Sum_probs=36.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHH
Q 045616 214 ASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDR 269 (671)
Q Consensus 214 ~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~ek 269 (671)
.+..-+|..|+.+|+..+..|.+|...-....-+++.+.|+...|+...+.--.++
T Consensus 33 ~~~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~ 88 (191)
T PRK14140 33 ESEAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQS 88 (191)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888888887766666666667777766666654444333333
No 126
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=55.90 E-value=16 Score=40.08 Aligned_cols=53 Identities=19% Similarity=0.324 Sum_probs=42.0
Q ss_pred ccccccccccccchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 183 KGRVGESRYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLR 239 (671)
Q Consensus 183 k~R~~e~~~~L~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~ 239 (671)
+-|+++++++|.. ..+=|.+..|..|---.|+||+.|+.||-.-+++...+..
T Consensus 192 eerv~kAs~~L~~----yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks 244 (372)
T COG3524 192 EERVKKASNDLTD----YRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKS 244 (372)
T ss_pred HHHHHHHHhHHHH----HHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666653 4677899999999999999999999999988888776654
No 127
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=55.87 E-value=75 Score=30.04 Aligned_cols=58 Identities=19% Similarity=0.394 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045616 264 SKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERR 321 (671)
Q Consensus 264 sKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERK 321 (671)
.++.+.+.+.+......++...+.-+.+-.|-.|..+||+++|........+|-.-.+
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~~ 63 (125)
T PF03245_consen 6 KRQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGNK 63 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCc
Confidence 4556677777888888899999999999999999999999999999888888877643
No 128
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=55.40 E-value=1e+02 Score=35.20 Aligned_cols=88 Identities=31% Similarity=0.371 Sum_probs=58.7
Q ss_pred hcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHH--H
Q 045616 207 WSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELED--E 284 (671)
Q Consensus 207 W~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~--E 284 (671)
|=|-|..++++|.|-|||.--. -.--+||.+-+ +-...++-|.||.-+| |++|+.||+. |
T Consensus 374 rLLAEETAATiSAIEAMKnAhr--EEmeRELeKsq-SvnsdveaLRrQylee---------------lqsvqRELeVLSE 435 (593)
T KOG4807|consen 374 RLLAEETAATISAIEAMKNAHR--EEMERELEKSQ-SVNSDVEALRRQYLEE---------------LQSVQRELEVLSE 435 (593)
T ss_pred hhhhhhhhhhhHHHHHHHHHHH--HHHHHHHHhhh-ccccChHHHHHHHHHH---------------HHHHHHHHHHHHH
Confidence 5577888999999999875211 01112343333 6667788888888776 5677777775 6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 285 RKLRKRSESLHRKLARELSEVKSTLSNALR 314 (671)
Q Consensus 285 Rk~Rrr~E~ln~KL~~ELsE~Kss~~~alk 314 (671)
.=.-|.+| |.-|+..|.+-..++.+|-+
T Consensus 436 QYSQKCLE--nahLaqalEaerqaLRqCQr 463 (593)
T KOG4807|consen 436 QYSQKCLE--NAHLAQALEAERQALRQCQR 463 (593)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 66677776 44577777777777777743
No 129
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.92 E-value=3.8e+02 Score=32.56 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=9.2
Q ss_pred hHHHHHHHHhHHHHH
Q 045616 246 HEMDDLMKQIAEDKL 260 (671)
Q Consensus 246 ~eie~l~KqlaEEK~ 260 (671)
.+++.|+.+|.+++.
T Consensus 511 ~~~~~li~~L~~~~~ 525 (771)
T TIGR01069 511 EEINVLIEKLSALEK 525 (771)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666554
No 130
>PRK03918 chromosome segregation protein; Provisional
Probab=54.74 E-value=4.4e+02 Score=31.42 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=13.5
Q ss_pred ceeeecccccccceeeEEEEEEeccCCC
Q 045616 15 LVFLGFGYCQARATIKFSILIVGLCHPP 42 (671)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (671)
|.+-+|+-.. .++|.|+--+..||.++
T Consensus 6 l~i~nf~~~~-~~~i~f~~g~~~i~G~n 32 (880)
T PRK03918 6 LKIKNFRSHK-SSVVEFDDGINLIIGQN 32 (880)
T ss_pred EEEeCccCcc-CceEecCCCcEEEEcCC
Confidence 4555664222 35788863333344443
No 131
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.53 E-value=2.5e+02 Score=33.77 Aligned_cols=48 Identities=19% Similarity=-0.029 Sum_probs=29.8
Q ss_pred CchhHHHHhhhcceeeecccccccceeeEEEEEEeccCCCcccccccc
Q 045616 3 LKPEAEAIFRQNLVFLGFGYCQARATIKFSILIVGLCHPPEAHDSIIK 50 (671)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (671)
+.|..+|..---|.-+|+||--.--+=+.-|.+-=.-++.+--|+-+-
T Consensus 110 ~~P~eeA~~~A~LA~~GvG~ev~~fEdeT~I~VsR~RS~g~GGwSq~R 157 (652)
T COG2433 110 LNPYEEAYACARLASKGVGTEVSVFEDETKITVSRGRSLGPGGWSQNR 157 (652)
T ss_pred CChHHHHHHHHHHHhcCCCceeEeeeeeeEEEEEecccCCCCCccHHH
Confidence 567788888888888888886554444444444444455555565443
No 132
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=54.53 E-value=2.6e+02 Score=33.17 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=10.4
Q ss_pred CcccccccCccc--ccCC
Q 045616 447 EEDSAGSDSNCF--ELDK 462 (671)
Q Consensus 447 eddS~~SDlh~~--Eln~ 462 (671)
|++.|-+|...+ |+|.
T Consensus 506 eI~KIl~DTr~lQkeiN~ 523 (594)
T PF05667_consen 506 EIEKILSDTRELQKEINS 523 (594)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467777777666 5553
No 133
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=54.36 E-value=84 Score=36.20 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 294 LHRKLARELSEVKSTLSNALRELEGE 319 (671)
Q Consensus 294 ln~KL~~ELsE~Kss~~~alkelE~E 319 (671)
.|..+-+||..+..++.+|-++||--
T Consensus 303 e~e~~rkelE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 303 ENETSRKELEQLRVALEKAEKELEAN 328 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455578888888888887777653
No 134
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.15 E-value=4.6e+02 Score=31.52 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=16.7
Q ss_pred hHHHhhhcccchhhHHHHhhHHHHHHHHhhh
Q 045616 380 KLEEAQYGLSEKNSIVDKLGFEIEAYLQAKR 410 (671)
Q Consensus 380 KL~eAk~~leeK~s~vdkL~~elEaFL~~k~ 410 (671)
+|.+|=.+|..-..+-+-|+.||+.|+....
T Consensus 230 QlEEALeTlq~EReqk~alkkEL~q~~n~e~ 260 (772)
T KOG0999|consen 230 QLEEALETLQQEREQKNALKKELSQYRNAED 260 (772)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcchhh
Confidence 3444444444334444557777777765544
No 135
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=53.95 E-value=1.5e+02 Score=37.23 Aligned_cols=11 Identities=18% Similarity=0.449 Sum_probs=7.1
Q ss_pred HHHHHhhhccc
Q 045616 59 KLAAALWEFHH 69 (671)
Q Consensus 59 KLaAtLWEi~~ 69 (671)
-||..|||+--
T Consensus 228 SLG~ILYELLT 238 (1021)
T PTZ00266 228 ALGCIIYELCS 238 (1021)
T ss_pred HHHHHHHHHHH
Confidence 36777777643
No 136
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=53.47 E-value=2.8e+02 Score=28.75 Aligned_cols=73 Identities=30% Similarity=0.517 Sum_probs=50.7
Q ss_pred HHHHHHHhhhhhhHHH---HHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 045616 234 IKELLRDQQADRHEMD---DLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLS 310 (671)
Q Consensus 234 I~eL~~E~~s~~~eie---~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~ 310 (671)
|.+|+.|++...+.+. +|.--| -+|+++ ++..||.|+.-.++.|.-|+|+...|.|=+.=.+
T Consensus 115 i~eLe~EKrkh~~~~aqgDD~t~lL--------EkEReR-------Lkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K 179 (192)
T PF09727_consen 115 IQELEEEKRKHAEDMAQGDDFTNLL--------EKERER-------LKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLK 179 (192)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHH--------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888766554332 333333 233444 6678999999999999999999888887666666
Q ss_pred HHHHHHHHHHh
Q 045616 311 NALRELEGERR 321 (671)
Q Consensus 311 ~alkelE~ERK 321 (671)
..+--|-+|+|
T Consensus 180 ~~~l~Lv~E~k 190 (192)
T PF09727_consen 180 SFVLMLVKERK 190 (192)
T ss_pred HHHHHHHHHHh
Confidence 66666666665
No 137
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=53.41 E-value=1.3e+02 Score=33.80 Aligned_cols=66 Identities=23% Similarity=0.405 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 045616 222 ALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARE 301 (671)
Q Consensus 222 aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~E 301 (671)
-|+.+|-|+|. +...-....+.+|-++.++.||+. ....-+++++.| .+..|.-+..|-+|
T Consensus 110 kL~nqL~~~~~----vf~k~k~~~q~LE~li~~~~EEn~--------~lqlqL~~l~~e-------~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 110 KLKNQLFHVRE----VFMKTKGDIQHLEGLIRHLREENQ--------CLQLQLDALQQE-------CGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHH----HHHHhcchHHHHHHHHHHHHHHHH--------HHHHhHHHHHHH-------HhHhHHHHHHHHHH
Confidence 35556655554 444455566778888888888763 222333333332 33334445666666
Q ss_pred HHHHH
Q 045616 302 LSEVK 306 (671)
Q Consensus 302 LsE~K 306 (671)
|+|+-
T Consensus 171 LaE~l 175 (401)
T PF06785_consen 171 LAEAL 175 (401)
T ss_pred HHHHH
Confidence 66643
No 138
>PRK09039 hypothetical protein; Validated
Probab=53.29 E-value=2e+02 Score=31.46 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=19.1
Q ss_pred HHhhcccccCcccH-HHHHHHHHHHHHHHHHHHHHHH
Q 045616 204 NRIWSLEEQHASNV-SLIKALKTELDHARVKIKELLR 239 (671)
Q Consensus 204 nrIW~leeq~~s~~-Slv~aLk~EL~~Ar~~I~eL~~ 239 (671)
..+-+++.+....+ .-|..|+.+|..|+++-.+|+.
T Consensus 66 ~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 66 ADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444433332 4566666666666666666655
No 139
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=53.09 E-value=3.2e+02 Score=32.39 Aligned_cols=149 Identities=21% Similarity=0.370 Sum_probs=99.0
Q ss_pred cccccccccchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhh
Q 045616 186 VGESRYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSK 265 (671)
Q Consensus 186 ~~e~~~~L~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsK 265 (671)
|++.+|-|.+ ..+=+-+.+ |.++-..+-++|.. .|||.|..-+..+ +| +|+.|-..|.-|-.|.+.=
T Consensus 241 m~~~gY~l~~-~~id~~~~~---L~~~l~~~~~~l~~--Leld~aeeel~~I-~e------~ie~lYd~lE~EveA~~~V 307 (570)
T COG4477 241 MKEEGYHLEH-VNIDSRLER---LKEQLVENSELLTQ--LELDEAEEELGLI-QE------KIESLYDLLEREVEAKNVV 307 (570)
T ss_pred HHHccCCccc-ccHHHHHHH---HHHHHHHHHhHHHH--hhhhhHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHH
Confidence 5666676766 333333333 34554444455544 4678887766543 33 3777777777777666653
Q ss_pred H---------HHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 045616 266 E---------QDRIHAAVQSVRDELEDERKLRKRSES---LHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEF 333 (671)
Q Consensus 266 E---------~eki~aai~slk~ELe~ERk~Rrr~E~---ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDEL 333 (671)
+ -+|++..-.-+++|++.=++.=+=+|. --+++.+||.+.++.+...+..++....+=-.+.+--.++
T Consensus 308 ~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~ 387 (570)
T COG4477 308 EENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEI 387 (570)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3 456677777777777766655554443 4578999999999999999999999998888888887777
Q ss_pred HhhccccHHHHHHH
Q 045616 334 AIGIKDYDQELHAL 347 (671)
Q Consensus 334 AkgI~edkaEVe~L 347 (671)
-+++.+-+.+-+.+
T Consensus 388 ~~~l~~i~~~q~~~ 401 (570)
T COG4477 388 EKALTDIEDEQEKV 401 (570)
T ss_pred HHHHHHHhhhHHHH
Confidence 77766655554433
No 140
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=53.09 E-value=2.9e+02 Score=33.64 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=19.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 045616 282 EDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSR 323 (671)
Q Consensus 282 e~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaR 323 (671)
..|+|+++..+.--++.-+|=..-|---.++-|+.|+++++.
T Consensus 296 kee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k 337 (811)
T KOG4364|consen 296 KEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAK 337 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444455555555443
No 141
>PRK01156 chromosome segregation protein; Provisional
Probab=53.03 E-value=4.9e+02 Score=31.45 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMD 249 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie 249 (671)
++..+..+|..-..+|.+|..+......+++
T Consensus 470 ~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 470 IINHYNEKKSRLEEKIREIEIEVKDIDEKIV 500 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555556666555544444333
No 142
>PLN03188 kinesin-12 family protein; Provisional
Probab=52.88 E-value=6.5e+02 Score=32.85 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=28.7
Q ss_pred cccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 045616 210 EEQHASNVSLIKALKTELDHARVKIKELLRDQQADRH 246 (671)
Q Consensus 210 eeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~ 246 (671)
.|-+.--|+|.--|++||+-.|..+.+|..|-...++
T Consensus 1057 ~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~ 1093 (1320)
T PLN03188 1057 TEAESKWISLAEELRTELDASRALAEKQKHELDTEKR 1093 (1320)
T ss_pred HHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4455666788888899999888888888877777665
No 143
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=52.87 E-value=1.6e+02 Score=30.68 Aligned_cols=143 Identities=24% Similarity=0.345 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHH--HHHHHHHHHHHHH-HHH-Hhh--hhHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRI--HAAVQSVRDELED-ERK-LRK--RSES 293 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki--~aai~slk~ELe~-ERk-~Rr--r~E~ 293 (671)
|+-||.-|--|++.|..=..| |=.|.-++.+=+..-.+++.... ..++..-.-||+. |-. -|+ ..+.
T Consensus 12 IsLLKqQLke~q~E~~~K~~E-------iv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~l 84 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSE-------IVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAEL 84 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHH
Confidence 566677777777666654444 33333344443333333333222 2222222222221 111 122 2344
Q ss_pred HHHHHHH---HHHHHHHHHHHHH---H-----HHHHHHhhHHHH-HHHHHHHHhhccccHHHHHHHhhhchhhhccCCcc
Q 045616 294 LHRKLAR---ELSEVKSTLSNAL---R-----ELEGERRSRKLL-EELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQ 361 (671)
Q Consensus 294 ln~KL~~---ELsE~Kss~~~al---k-----elE~ERKaRell-E~vCDELAkgI~edkaEVe~LKres~k~~~ee~ee 361 (671)
+..|++. ||++.+..+..+. . ..-.+-+++..- ...-+.|-.++..+++|+...++..+... ...+.
T Consensus 85 Lrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~-~~Fe~ 163 (202)
T PF06818_consen 85 LREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQR-SSFEQ 163 (202)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHH-HHHHH
Confidence 6666655 6777777776651 0 001111222211 33344555566666666666666554444 34566
Q ss_pred chhhHHhhhhhhhhh
Q 045616 362 DHLILHISESWLDER 376 (671)
Q Consensus 362 ER~MLqmAEvWREER 376 (671)
||. +|.||.
T Consensus 164 ER~------~W~eEK 172 (202)
T PF06818_consen 164 ERR------TWQEEK 172 (202)
T ss_pred HHH------HHHHHH
Confidence 776 588885
No 144
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.79 E-value=82 Score=34.24 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred cchhhHHhh-hhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHhh
Q 045616 361 QDHLILHIS-ESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAK 409 (671)
Q Consensus 361 eER~MLqmA-EvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k 409 (671)
+.-.+|.-| +.=+|.|++ ||++-+-.| ..+|-+|..+||..-...
T Consensus 204 e~a~~L~~aG~g~LDvRLk-Kl~~eke~L---~~qv~klk~qLee~~~~~ 249 (302)
T PF09738_consen 204 EAAQLLESAGDGSLDVRLK-KLADEKEEL---LEQVRKLKLQLEERQSEG 249 (302)
T ss_pred hhhhhhcccCCCCHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence 444566666 778888987 677665444 356788888888765443
No 145
>PRK14139 heat shock protein GrpE; Provisional
Probab=52.22 E-value=2.8e+02 Score=28.36 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDEL 281 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL 281 (671)
-+..|+.+|+..+.++.+|...-....-+++.+.|+...|+...+.--.+++-..+-.+.+.|
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnL 95 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSL 95 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 356788888888888888877777777788888888877775554444444333333333333
No 146
>PRK14143 heat shock protein GrpE; Provisional
Probab=52.07 E-value=2.9e+02 Score=29.22 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKL 298 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 298 (671)
-+..|+.+|...+..+.+|...-.+..-+++.+.|+...|+...+. ..+.++
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~----------------------------~a~~~~ 119 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL----------------------------QLKCNT 119 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHH
Confidence 3566777777777777777655555556666666666555433222 345566
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045616 299 ARELSEVKSTLSNALREL 316 (671)
Q Consensus 299 ~~ELsE~Kss~~~alkel 316 (671)
+++|..+--.|..|+.-+
T Consensus 120 ~~~lLpV~DnLerAl~~~ 137 (238)
T PRK14143 120 LSEILPVVDNFERARQQL 137 (238)
T ss_pred HHHHHHHHhHHHHHHhcc
Confidence 666666666666665533
No 147
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=51.79 E-value=1.1e+02 Score=36.31 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=9.5
Q ss_pred ccccccccchHHHHHHHh
Q 045616 47 SIIKENSHLSARKLAAAL 64 (671)
Q Consensus 47 ~~~~~~~~vSARKLaAtL 64 (671)
-|+.-+++.-|-|---.|
T Consensus 450 GfVTMSts~eAtkCI~hL 467 (940)
T KOG4661|consen 450 GFVTMSTSAEATKCIEHL 467 (940)
T ss_pred EEEEecchHHHHHHHHHh
Confidence 455555555555554444
No 148
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=51.67 E-value=3.7e+02 Score=29.66 Aligned_cols=187 Identities=20% Similarity=0.222 Sum_probs=95.3
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhH---HHHHHhhhhHHH---HHHHHHHHHHHHHH
Q 045616 209 LEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIA---EDKLIRKSKEQD---RIHAAVQSVRDELE 282 (671)
Q Consensus 209 leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla---EEK~awKsKE~e---ki~aai~slk~ELe 282 (671)
|.+++..=.--..+|..+|..+..+|.+|.+|-.. | +.|++-++ ||-..--+-.-. .....-..-.--|+
T Consensus 88 Ll~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~-k---deLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le 163 (306)
T PF04849_consen 88 LLEQNQDLSERNEALEEQLGAALEQVEQLRHELSM-K---DELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLE 163 (306)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHhcCcHhhhcccccCCCccccccccccccccchhHH
Confidence 56666555566789999999999999999988632 2 33444443 222111110000 00000000000122
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--------------Hhhccc---cHHHHH
Q 045616 283 DERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEF--------------AIGIKD---YDQELH 345 (671)
Q Consensus 283 ~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDEL--------------AkgI~e---dkaEVe 345 (671)
.=++-=|.+|.-|.+|-.|-+..+.....+ |.+.+.||.+.+.+| |+...+ ...||-
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~------EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt 237 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTY------EEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEIT 237 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhc------cHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333456667777777777666555533 555677776655444 333222 223333
Q ss_pred HHhhhch------hhhccCCccchhhHHhhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHhhh
Q 045616 346 ALKQKSD------KNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKR 410 (671)
Q Consensus 346 ~LKres~------k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k~ 410 (671)
.|..+.. |... .|.|-.-.|+... --.|+.|..==..|.+||+.+-.|=.|-+.=|++-+
T Consensus 238 ~LlsqivdlQ~r~k~~~--~EnEeL~q~L~~s---ke~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 238 SLLSQIVDLQQRCKQLA--AENEELQQHLQAS---KESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHh--hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3322211 1121 2333333333332 235666655555688888888877777776666544
No 149
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=51.58 E-value=2.7e+02 Score=28.14 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 275 QSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 275 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
..|+.=.++-++.||+.+....||.+++...-..+.++.+.|+..-+.-+-...-.........-.+.+++.++..
T Consensus 94 ~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k 169 (251)
T cd07653 94 KELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKAN 169 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 3344444555788899999999999999988888888888887766655554444433333222234455544444
No 150
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=51.54 E-value=48 Score=27.91 Aligned_cols=58 Identities=24% Similarity=0.341 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 292 ESLHRKLARELSEVKSTLSNALRELEGERRS-RKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 292 E~ln~KL~~ELsE~Kss~~~alkelE~ERKa-RellE~vCDELAkgI~edkaEVe~LKre 350 (671)
+.|+++|.+|+. ++..+.+.++-|..-++. +.-++.-.++--+.|.-++.+++.++..
T Consensus 4 ~~L~~~i~~E~k-i~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 4 EELQKKIDKELK-IKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444432 333444444444333333 4444444555555555666666655544
No 151
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=51.12 E-value=5.4e+02 Score=32.22 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=20.2
Q ss_pred HhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 045616 254 QIAEDKLIRKSKEQDRIHAAVQSVRDELED 283 (671)
Q Consensus 254 qlaEEK~awKsKE~eki~aai~slk~ELe~ 283 (671)
++.+++..|-..|+.+|.+++..-..-+.+
T Consensus 715 ~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~ 744 (988)
T KOG2072|consen 715 RQEEDRELYEAREKQRIEAAIAERESAVKD 744 (988)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777888888888888777654444443
No 152
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=50.92 E-value=4e+02 Score=29.78 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQA 243 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s 243 (671)
+-+..|+..|..+++++..|.++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 97 NQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777666643
No 153
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=50.77 E-value=5.5e+02 Score=31.37 Aligned_cols=125 Identities=19% Similarity=0.250 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHH---HhHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHhhhhHHH
Q 045616 222 ALKTELDHARVKIKELLRDQQADRH--EMDDLMK---QIAEDKLIRKSKEQD--RIHAAVQSVRDELEDERKLRKRSESL 294 (671)
Q Consensus 222 aLk~EL~~Ar~~I~eL~~E~~s~~~--eie~l~K---qlaEEK~awKsKE~e--ki~aai~slk~ELe~ERk~Rrr~E~l 294 (671)
.++.|++..+.++..+.++.++... ..+..++ ++++.+-.-+.++.. -+-+-++.+-...+ .++..
T Consensus 397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~e-------d~Qeq 469 (698)
T KOG0978|consen 397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFE-------DMQEQ 469 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 4566666666666666666665554 3444455 333333222222221 11222233333333 37888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchh
Q 045616 295 HRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDK 353 (671)
Q Consensus 295 n~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k 353 (671)
|.||.-||.+.--.--+++.+..+-...-.+|.+-=+.|...|-..++-+..+.....+
T Consensus 470 n~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~ 528 (698)
T KOG0978|consen 470 NQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGK 528 (698)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888777777777777777777777777777766666543
No 154
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=50.56 E-value=2.3e+02 Score=26.90 Aligned_cols=110 Identities=18% Similarity=0.300 Sum_probs=57.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 045616 215 SNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESL 294 (671)
Q Consensus 215 s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~l 294 (671)
.-|.+|..|-.--++-..+-..|....+....++++|-..+.-= ++++...-+.+..-...++.+.+....+
T Consensus 35 ~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL--------~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 35 RVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERL--------KEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666677777777777777666555322 2333333333444444555555544444
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhh
Q 045616 295 HR---KLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQ 349 (671)
Q Consensus 295 n~---KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKr 349 (671)
.. .+..|+.-++. .+..++..++.+|+--+-|++.||.
T Consensus 107 ~~~~k~~kee~~klk~-----------------~~~~~~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 107 EAKLKQEKEELQKLKN-----------------QLQQRKTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33444444444 4444444444444444555665554
No 155
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=50.49 E-value=1.6e+02 Score=35.68 Aligned_cols=87 Identities=24% Similarity=0.271 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHH--HHhh-------hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDK--LIRK-------SKEQDRIHAAVQSVRDELEDERKLRKR 290 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK--~awK-------sKE~eki~aai~slk~ELe~ERk~Rrr 290 (671)
|..|+..+..-+..+.-|++|-.....-++.+-+...+=+ +.|= .+.-+.|.--+.....||+.++..|+|
T Consensus 526 i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~r 605 (698)
T KOG0978|consen 526 IGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKR 605 (698)
T ss_pred HHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554444444444333211 1111 122334455567778899999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 045616 291 SESLHRKLARELSEVK 306 (671)
Q Consensus 291 ~E~ln~KL~~ELsE~K 306 (671)
+|.-+.+|-+.|..++
T Consensus 606 leEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 606 LEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999988887654
No 156
>PRK14151 heat shock protein GrpE; Provisional
Probab=49.91 E-value=2.9e+02 Score=27.89 Aligned_cols=47 Identities=4% Similarity=0.078 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhh
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKS 264 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKs 264 (671)
+-+..|+.+++..+.++.+|...-....-+++.+.|+...|+...+.
T Consensus 20 ~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~ 66 (176)
T PRK14151 20 AAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHK 66 (176)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888888888766666666777777777666543333
No 157
>PRK14158 heat shock protein GrpE; Provisional
Probab=49.62 E-value=1.6e+02 Score=30.25 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=47.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 045616 214 ASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSES 293 (671)
Q Consensus 214 ~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ 293 (671)
+..-.-+..|+.+|.....++.+|...-....-+++.+.|+...|+...+. .
T Consensus 36 ~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~----------------------------~ 87 (194)
T PRK14158 36 VAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLK----------------------------Y 87 (194)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------H
Confidence 344455778888888888888888766666667777777777666532222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045616 294 LHRKLARELSEVKSTLSNALR 314 (671)
Q Consensus 294 ln~KL~~ELsE~Kss~~~alk 314 (671)
...+++++|-.+--.|..|+.
T Consensus 88 a~~~~~~~lLpV~DnLerAl~ 108 (194)
T PRK14158 88 GNESLILEILPAVDNMERALD 108 (194)
T ss_pred HHHHHHHHHHhHHhHHHHHHh
Confidence 445667777666666666643
No 158
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=49.44 E-value=70 Score=36.92 Aligned_cols=56 Identities=32% Similarity=0.496 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 045616 224 KTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARE 301 (671)
Q Consensus 224 k~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~E 301 (671)
+.-|+.-|+||.||..= |+-|-++ |.| -|.-|+.+||.|+++|-++|.--.||.+.
T Consensus 568 k~s~delr~qi~el~~i-------ve~lk~~------------~~k---el~kl~~dleeek~mr~~lemei~~lkka 623 (627)
T KOG4348|consen 568 KNSLDELRAQIIELLCI-------VEALKKD------------HGK---ELEKLRKDLEEEKTMRSNLEMEIEKLKKA 623 (627)
T ss_pred hhhHHHHHHHHHHHHHH-------HHHHHHH------------HHH---HHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 45578889999988653 2222222 222 34457778888888888777655555443
No 159
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=49.32 E-value=2.5e+02 Score=27.95 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHH
Q 045616 197 TELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQ 267 (671)
Q Consensus 197 ~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~ 267 (671)
+|+=+++.+- |.+ -=..=|++|=..-..|+-+.++-++...|-..-+.+.+.|..+...+|..++..|.
T Consensus 10 ~EfE~lId~~-G~e-~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~ 78 (158)
T PF09744_consen 10 KEFERLIDRY-GEE-AVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEE 78 (158)
T ss_pred HHHHHHHHHh-Chh-HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777665 222 11223454444445577666666555555555556667777777777666555543
No 160
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=49.10 E-value=3.6e+02 Score=30.67 Aligned_cols=176 Identities=20% Similarity=0.244 Sum_probs=76.7
Q ss_pred chHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhh-HHHHHHHH
Q 045616 195 TSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSK-EQDRIHAA 273 (671)
Q Consensus 195 TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsK-E~eki~aa 273 (671)
++.|||+.++=+- +|-.+-+ -+|.+|+ |++-+.|.-|-+--+..|.+=+--|..+-+.-+.| +.|||-..
T Consensus 13 Sk~ELl~LfS~lE--GEleARd-~VIdaLK------raqhkd~fiE~kYGK~NinDP~~ALqRDf~~l~Ek~D~EK~p~c 83 (561)
T KOG1103|consen 13 SKDELLKLFSFLE--GELEARD-DVIDALK------RAQHKDLFIEAKYGKLNINDPFAALQRDFAILGEKIDEEKIPQC 83 (561)
T ss_pred chHHHHHHHHHHh--hhhhHHH-HHHHHHH------HHHHHHHHHHHhhcccccCChHHHHHHHHHHHhcccccccccee
Confidence 6789999887662 3333333 4577766 33444555554444444443222222222222111 11222111
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHhhccccHH
Q 045616 274 VQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRK-----------LLEELCDEFAIGIKDYDQ 342 (671)
Q Consensus 274 i~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRe-----------llE~vCDELAkgI~edka 342 (671)
-. .-|+-=.++..+-..+.+..+.-|+-+..--.+.+++||.+|.+.. .||+--+.|-..|.=...
T Consensus 84 t~---spl~iL~~mM~qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~ 160 (561)
T KOG1103|consen 84 TE---SPLDILDKMMAQCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIE 160 (561)
T ss_pred cc---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122223344444444455555555555555566666665554432 344444555555443333
Q ss_pred HHHHHhhhchhhhccCCccch-hhHHhhhhhhhhhhhhhHHH
Q 045616 343 ELHALKQKSDKNWTGKGEQDH-LILHISESWLDERMQMKLEE 383 (671)
Q Consensus 343 EVe~LKres~k~~~ee~eeER-~MLqmAEvWREERVQMKL~e 383 (671)
|+......-.|.- -.+++|| +--||+-.+--||-||-|--
T Consensus 161 e~kK~E~~k~Kl~-~qLeeEk~RHeqis~mLilEcKka~~Ka 201 (561)
T KOG1103|consen 161 EKKKAEIAKDKLE-MQLEEEKKRHEQISLMLILECKKALLKA 201 (561)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322211111111 1123333 23355555556666665443
No 161
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=48.89 E-value=6.9e+02 Score=32.03 Aligned_cols=125 Identities=14% Similarity=0.183 Sum_probs=69.7
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH----
Q 045616 212 QHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKL---- 287 (671)
Q Consensus 212 q~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~---- 287 (671)
..+.+-+..-.|++|+..-.+++..|++|..++.+..+-+-.|... ..++.+...+-|+.+++.+..-|..
T Consensus 167 ~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl-----~~~~~~~l~~~~~~Lq~~in~kR~~~se~ 241 (1109)
T PRK10929 167 NTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSEL-----AKKRSQQLDAYLQALRNQLNSQRQREAER 241 (1109)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556678889999999999999999998887755544444321 1334444445555555544432210
Q ss_pred -hhhhH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHh
Q 045616 288 -RKRSE-----------------SLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALK 348 (671)
Q Consensus 288 -Rrr~E-----------------~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LK 348 (671)
-++++ ..|++|+.+|...-.-+... .+....+++.-|.+.+-...-++.+..|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l-------~~~~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 242 ALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLI-------ASQQRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 01111 34777877776543333333 33344445555555555555555555444
No 162
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=48.89 E-value=6.4e+02 Score=31.61 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=7.7
Q ss_pred CCCCCCcCCcCCccc
Q 045616 150 ALQPLSPASYGSSME 164 (671)
Q Consensus 150 alqp~Spas~~ssme 164 (671)
.|.|=.||.-+.|.+
T Consensus 499 ~L~~GePCPVCGS~~ 513 (1047)
T PRK10246 499 QLQAGQPCPLCGSTS 513 (1047)
T ss_pred hCCCCCCcCCCCccc
Confidence 445555555555543
No 163
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=48.86 E-value=4.5e+02 Score=29.78 Aligned_cols=106 Identities=23% Similarity=0.335 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHhhHHHHHHHHHHHHhhccccHHHHHHHhh
Q 045616 277 VRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALREL---EG----ERRSRKLLEELCDEFAIGIKDYDQELHALKQ 349 (671)
Q Consensus 277 lk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkel---E~----ERKaRellE~vCDELAkgI~edkaEVe~LKr 349 (671)
+++-++.-..--+++..-|.||..+|-.+..-|.++--+. |. -+....-++---|++.++++|.++|...|-|
T Consensus 90 i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr 169 (401)
T PF06785_consen 90 IRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNR 169 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Confidence 3333444444456788889999999999888887763222 11 1111223344445566666666666666655
Q ss_pred hchhhhccCCccchhhHHhhhhhhhhhhhhhH-HHhhhcccchhhHHHHhhHHH
Q 045616 350 KSDKNWTGKGEQDHLILHISESWLDERMQMKL-EEAQYGLSEKNSIVDKLGFEI 402 (671)
Q Consensus 350 es~k~~~ee~eeER~MLqmAEvWREERVQMKL-~eAk~~leeK~s~vdkL~~el 402 (671)
|. ||.. |+|--| .+-+.+|-+-.+++|+=+.-|
T Consensus 170 EL-----------------aE~l---ayqq~L~~eyQatf~eq~~ml~kRQ~yI 203 (401)
T PF06785_consen 170 EL-----------------AEAL---AYQQELNDEYQATFVEQHSMLDKRQAYI 203 (401)
T ss_pred HH-----------------HHHH---HHHHHHHHHhhcccccchhhhHHHHHHH
Confidence 53 2221 233333 344566666666666655444
No 164
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=48.59 E-value=5.5e+02 Score=33.21 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=15.9
Q ss_pred HhhhhcCCCCCCCCCCcCCCCCCCCC
Q 045616 619 RQWMSKLTPPDIDISESSTKAPPVSK 644 (671)
Q Consensus 619 Rqw~~~~~spd~d~se~s~~~p~g~K 644 (671)
+-|.---+.|.+.|-+.. .|++++
T Consensus 1315 ~~Wg~Y~tVp~laI~el~--R~~~~~ 1338 (1353)
T TIGR02680 1315 REWGCYPEVPGLAICQLL--RPDGVD 1338 (1353)
T ss_pred chhccccCCCcceEEEEe--cCCCCC
Confidence 456655577888887775 666654
No 165
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=48.54 E-value=5.1e+02 Score=31.87 Aligned_cols=128 Identities=23% Similarity=0.310 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 045616 216 NVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAED--KLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSES 293 (671)
Q Consensus 216 ~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEE--K~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ 293 (671)
..+....|+.+|+...+...+|+-+-.....+++.++-+|.|= ++.-=..+-+..+..-.-+-.+|+..+-..+-++.
T Consensus 587 ~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~ 666 (769)
T PF05911_consen 587 DTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLET 666 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455667778888888888888887777777888777777431 11111111111111112222233333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 294 LHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 294 ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
-..-+-.|+.++..-+...--+|++||.. |.|+...-.+.+.+++..+++
T Consensus 667 ~~~~~e~E~~~l~~Ki~~Le~Ele~er~~-------~~e~~~kc~~Le~el~r~~~~ 716 (769)
T PF05911_consen 667 RLKDLEAEAEELQSKISSLEEELEKERAL-------SEELEAKCRELEEELERMKKE 716 (769)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------chhhhhHHHHHHHHHHhhhcc
Confidence 33333456666666666666777777764 666666666667777766655
No 166
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.44 E-value=2.6e+02 Score=32.27 Aligned_cols=127 Identities=21% Similarity=0.236 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQ----ADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLH 295 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~----s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln 295 (671)
+.-|+++|+-|++.+.-..+=-- +....|+-..++-.||-++-+.-..+-+...=-.+-.-|+.||..-+ .--
T Consensus 40 l~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~q---q~~ 116 (542)
T KOG0993|consen 40 LGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQ---QNE 116 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHH---HHH
Confidence 56677788877776544332111 11234556666666666555544444444333334445777765443 344
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhch
Q 045616 296 RKLARELSEVKSTLSN--ALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSD 352 (671)
Q Consensus 296 ~KL~~ELsE~Kss~~~--alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~ 352 (671)
.++-+|+...+.-++. ..-+||+|++-+.=.++--.|+.. -.+.||.+||.+..
T Consensus 117 e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~---pmekeI~elk~kl~ 172 (542)
T KOG0993|consen 117 EKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVT---PMEKEINELKKKLA 172 (542)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHh---hHHHHHHHHHHHHH
Confidence 6888888888888887 788899998766555444455543 35567777776643
No 167
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=48.40 E-value=5.4e+02 Score=31.93 Aligned_cols=75 Identities=31% Similarity=0.401 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---------------HHHHHH---HHHHHHHHHHHHHHhhHHHHHH
Q 045616 267 QDRIHAAVQSVRDELEDERKLRKRSESLHRKLAR---------------ELSEVK---STLSNALRELEGERRSRKLLEE 328 (671)
Q Consensus 267 ~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~---------------ELsE~K---ss~~~alkelE~ERKaRellE~ 328 (671)
+--|.=|+|.|+.|-. .||||+-.||..|-. ||.-.+ .+|.+- |..-.|.-++|-.
T Consensus 382 q~EIALA~QplrsENa---qLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~q---l~es~k~~e~lq~ 455 (861)
T PF15254_consen 382 QVEIALAMQPLRSENA---QLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQ---LQESLKSQELLQS 455 (861)
T ss_pred hhhhHhhhhhhhhhhH---HHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHH---HHHHHHhHHHHHH
Confidence 5567778898888865 588999999999854 222222 233333 4445677788888
Q ss_pred HHHHHHhhccccHHHHHHH
Q 045616 329 LCDEFAIGIKDYDQELHAL 347 (671)
Q Consensus 329 vCDELAkgI~edkaEVe~L 347 (671)
.-+||-|-|..-+.|--.|
T Consensus 456 kneellk~~e~q~~Enk~~ 474 (861)
T PF15254_consen 456 KNEELLKVIENQKEENKRL 474 (861)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 8888888877666654433
No 168
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=48.27 E-value=5.4e+02 Score=30.61 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHh
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIR 262 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~aw 262 (671)
-+..|+.+|+..+.+|.++..+-...+.++..+...+.+.+..-
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~ 372 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAEN 372 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777776666665555555554444333
No 169
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=47.63 E-value=3.9e+02 Score=28.78 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045616 266 EQDRIHAAVQSVRDELEDERK 286 (671)
Q Consensus 266 E~eki~aai~slk~ELe~ERk 286 (671)
+-+.+++.|.++..+|+.-|+
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~ 230 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKK 230 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666664443
No 170
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=47.30 E-value=2.8e+02 Score=26.97 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 045616 223 LKTELDHARVKIKELLRDQQ 242 (671)
Q Consensus 223 Lk~EL~~Ar~~I~eL~~E~~ 242 (671)
+..|+..++.++.+|.+|-.
T Consensus 79 ~~~e~~~~~~~l~~l~~el~ 98 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELD 98 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHH
Confidence 33455555555555554433
No 171
>PRK14146 heat shock protein GrpE; Provisional
Probab=46.92 E-value=3.5e+02 Score=28.21 Aligned_cols=64 Identities=20% Similarity=0.301 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELE 282 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe 282 (671)
-+..|+.+|+.++.++.+|...-.+..-+++.+.|+...|+...+.---+++-..+-.+-+-|+
T Consensus 55 ~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~Dnle 118 (215)
T PRK14146 55 TETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLE 118 (215)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 3778889999999999999877778888899999998888776666555555555545555444
No 172
>PRK14145 heat shock protein GrpE; Provisional
Probab=46.57 E-value=3.5e+02 Score=27.93 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 045616 217 VSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELE 282 (671)
Q Consensus 217 ~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe 282 (671)
..-+..|+.+|+.++.++.+|...-....-+++.+.|+...|+...+..--+++-..|-.+.+.|+
T Consensus 44 ~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLe 109 (196)
T PRK14145 44 VDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFE 109 (196)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence 355788999999999999999988888999999999999999988777777776666666666665
No 173
>PTZ00121 MAEBL; Provisional
Probab=45.68 E-value=9.1e+02 Score=32.47 Aligned_cols=163 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 045616 228 DHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKS 307 (671)
Q Consensus 228 ~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Ks 307 (671)
+.+|....+-.+..+..+.+-.+-.....-+-.++|..+.-++.++=+ .+|.-..+..|+.=+..=.+-++.+.+++
T Consensus 1112 ee~r~~ee~~~r~e~arr~eeARrae~~Rr~EeaRKrEeaRraE~aRr--eEEaRr~EEaRraEeArr~EEaRraEE~R- 1188 (2084)
T PTZ00121 1112 EEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARK--AEDARKAEEARKAEDAKKAEAARKAEEVR- 1188 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhhhHHHhhhc
Q 045616 308 TLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYG 387 (671)
Q Consensus 308 s~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~ 387 (671)
-..+++..|.+|++.+.=.. |.++.+.+-+...++.+.+.++.. |+.|+-.--|-.--++| ++.+.+..
T Consensus 1189 -r~EElRraEEaRkaEEaRRl---EE~RraEEARraEEErR~EE~Rra----EEaRK~aEEAkraEEeR---~~EE~Rk~ 1257 (2084)
T PTZ00121 1189 -KAEELRKAEDARKAEAARKA---EEERKAEEARKAEDAKKAEAVKKA----EEAKKDAEEAKKAEEER---NNEEIRKF 1257 (2084)
T ss_pred -HHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_pred ccchhhHHHHhhHHHHH
Q 045616 388 LSEKNSIVDKLGFEIEA 404 (671)
Q Consensus 388 leeK~s~vdkL~~elEa 404 (671)
=+...+...+-..++++
T Consensus 1258 Eear~a~~A~r~aa~k~ 1274 (2084)
T PTZ00121 1258 EEARMAHFARRQAAIKA 1274 (2084)
T ss_pred HHHHHHHHHHHhHhhhh
No 174
>PRK00106 hypothetical protein; Provisional
Probab=45.64 E-value=5.7e+02 Score=30.12 Aligned_cols=9 Identities=22% Similarity=0.102 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 045616 230 ARVKIKELL 238 (671)
Q Consensus 230 Ar~~I~eL~ 238 (671)
|+.+.+++.
T Consensus 40 A~~~A~~Il 48 (535)
T PRK00106 40 AEQEAVNLR 48 (535)
T ss_pred HHHHHHHHH
Confidence 344444444
No 175
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=45.11 E-value=3.9e+02 Score=27.99 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=16.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 284 ERKLRKRSESLHRKLARELSEVKSTLSNALREL 316 (671)
Q Consensus 284 ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkel 316 (671)
|.+.+.=+..-|-.|++++.+.+..+.+.++-+
T Consensus 72 e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~ 104 (225)
T COG1842 72 EEKAELALQAGNEDLAREALEEKQSLEDLAKAL 104 (225)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445556666655555444444333
No 176
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=44.72 E-value=3.3e+02 Score=27.11 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRK 297 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 297 (671)
.-+..|+.++..-..+|.+|..+....+.++..|-..|.+ |.|-.+.+...+.++.-++..=-.-.++++.=|..
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~e-----k~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKE-----KNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778888888888888888887777777776666543 35566777777777777766555555677778888
Q ss_pred HHHHHHHHH
Q 045616 298 LARELSEVK 306 (671)
Q Consensus 298 L~~ELsE~K 306 (671)
|+.-+-+.|
T Consensus 177 Lv~Rwm~~k 185 (194)
T PF08614_consen 177 LVERWMQRK 185 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877775544
No 177
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=44.69 E-value=2.4e+02 Score=25.94 Aligned_cols=70 Identities=14% Similarity=0.248 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHhhhh
Q 045616 222 ALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQ-DRIHAAVQSVRDELEDERKLRKRS 291 (671)
Q Consensus 222 aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~-eki~aai~slk~ELe~ERk~Rrr~ 291 (671)
.+..+..-.+.++..+..++..-+..-..++..+-+-+..++.... .+....|..++.+|..+|+--+=+
T Consensus 7 ~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~ 77 (106)
T PF05837_consen 7 NLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVM 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444455555444444444444 678888888888888887655433
No 178
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=44.49 E-value=5.1e+02 Score=30.25 Aligned_cols=64 Identities=25% Similarity=0.450 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHH--HHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 045616 225 TELDHARVKIKELLRDQQADRHEMDDL--MKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLAREL 302 (671)
Q Consensus 225 ~EL~~Ar~~I~eL~~E~~s~~~eie~l--~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~EL 302 (671)
++|..-+....++++|..+.+.+...+ .+++.|.|+.. ...-+..+..||.+|| -+|.+|.+.+
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q-------~q~k~~k~~kel~~~~-------E~n~~l~knq 412 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQ-------LQTKLKKCQKELKEER-------EENKKLIKNQ 412 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-------HHHHHHHhhH
Confidence 577777777777888777766555544 45566665422 2233445666666666 4566665555
No 179
>PRK14156 heat shock protein GrpE; Provisional
Probab=44.43 E-value=3.5e+02 Score=27.48 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHH
Q 045616 222 ALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDR 269 (671)
Q Consensus 222 aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~ek 269 (671)
++..+|+..+.++.+|...-.....+++.+.|+...|+...+.--.++
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~ 78 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQD 78 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777766666666667777777766654444333333
No 180
>PRK00106 hypothetical protein; Provisional
Probab=44.29 E-value=6e+02 Score=29.97 Aligned_cols=13 Identities=8% Similarity=0.161 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 045616 228 DHARVKIKELLRD 240 (671)
Q Consensus 228 ~~Ar~~I~eL~~E 240 (671)
..|+...+++.++
T Consensus 49 eeAe~eAe~I~ke 61 (535)
T PRK00106 49 GKAERDAEHIKKT 61 (535)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666555533
No 181
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=44.05 E-value=3.6e+02 Score=27.33 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHH
Q 045616 298 LARELSEVKSTLSNALREL--EGERRSRKLLEELCDE 332 (671)
Q Consensus 298 L~~ELsE~Kss~~~alkel--E~ERKaRellE~vCDE 332 (671)
+.....+........+++. |..||=+-+++.+|-=
T Consensus 150 v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~ 186 (219)
T PF08397_consen 150 VTERQSELEEFEKQSLREALLEERRRYCFLVEKHCSV 186 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555553 4445556689999953
No 182
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=43.98 E-value=6.5e+02 Score=31.28 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=34.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHh
Q 045616 286 KLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALK 348 (671)
Q Consensus 286 k~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LK 348 (671)
+.+++.+.-..|+--|+.|+..-+..+--.||.-.|...+|.- .++.-.|||+.|+
T Consensus 487 ~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~i-------tlrQrDaEi~RL~ 542 (861)
T PF15254_consen 487 ENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGI-------TLRQRDAEIERLR 542 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhh-------HHHHHHHHHHHHH
Confidence 4566777777777777777777776666666666665555432 2334446665544
No 183
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=43.72 E-value=2.2e+02 Score=24.77 Aligned_cols=76 Identities=21% Similarity=0.327 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 045616 217 VSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHR 296 (671)
Q Consensus 217 ~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~ 296 (671)
-+++..|.-.|+....+|++|.+.|..-...|+.+-..|.+-.. -+.+.+.+.-+. =...=..+|+++..+|.
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~------~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~ 78 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE------VEQINEPFDLDP-YVKKLVNIKKRMSNLHE 78 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhHHHhhH-HHHHHHHHHHHHHHHHH
Confidence 36788889999999999999999998877777777777755432 122222221111 12222356888888888
Q ss_pred HHH
Q 045616 297 KLA 299 (671)
Q Consensus 297 KL~ 299 (671)
++.
T Consensus 79 ~l~ 81 (92)
T PF14712_consen 79 RLQ 81 (92)
T ss_pred HHH
Confidence 874
No 184
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=43.10 E-value=6.1e+02 Score=30.78 Aligned_cols=143 Identities=22% Similarity=0.372 Sum_probs=74.5
Q ss_pred cchHHHHHHHHHhhc-ccccCcccHHHHHHHHH--------HHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhh-
Q 045616 194 KTSTELLKVLNRIWS-LEEQHASNVSLIKALKT--------ELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRK- 263 (671)
Q Consensus 194 ~TS~ELlkVLnrIW~-leeq~~s~~Slv~aLk~--------EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awK- 263 (671)
+|-..++.-|+-||. ++|...--..++.-|+. =+++|...-..|+++--..+.++..|+..+.+.-..-.
T Consensus 14 ~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~ 93 (660)
T KOG4302|consen 14 ATCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEI 93 (660)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 355667777888887 55554433333333333 35667777777777777777777777777754322111
Q ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH------------------HHHHHHHHHHHH
Q 045616 264 --------SKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEV------------------KSTLSNALRELE 317 (671)
Q Consensus 264 --------sKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~------------------Kss~~~alkelE 317 (671)
.-+-.+|..++..|+...+.=++-=+-+-..-.+|..||..- =-.|..-|++|+
T Consensus 94 ~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~ 173 (660)
T KOG4302|consen 94 SDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQ 173 (660)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHH
Confidence 011223444444443332221111111112223444443322 124677788888
Q ss_pred HHHhhH--------HHHHHHHHHHHhh
Q 045616 318 GERRSR--------KLLEELCDEFAIG 336 (671)
Q Consensus 318 ~ERKaR--------ellE~vCDELAkg 336 (671)
+|+..| +-|..+|+.|--.
T Consensus 174 ~ek~~Rlekv~~~~~~I~~l~~~Lg~~ 200 (660)
T KOG4302|consen 174 KEKSDRLEKVLELKEEIKSLCSVLGLD 200 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888766 3456678876544
No 185
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.64 E-value=4e+02 Score=27.46 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 045616 231 RVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLS 310 (671)
Q Consensus 231 r~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~ 310 (671)
...+.++....+ +....-++..+....|. .|...+.+-++.+..|++.=+.-.++++..-..+-.|+++.+..+.
T Consensus 20 a~~~~~~~~~~~----~~~~~~~~sQ~~id~~~-~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 20 AATLDQAQQVQQ----QWVQAAQQSQKRIDQWD-DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred hccHHHHHHHHH----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554432 23333333333333333 2445555556666666665555555555555555555554433322
Q ss_pred HHHHHHHH-HHhhHHHHHHHHHHHHhhcc
Q 045616 311 NALRELEG-ERRSRKLLEELCDEFAIGIK 338 (671)
Q Consensus 311 ~alkelE~-ERKaRellE~vCDELAkgI~ 338 (671)
.. +. ++.-.-+|.+++++|-.-|.
T Consensus 95 ~~----~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 95 QI----EETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 11 12223455566666655444
No 186
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=42.62 E-value=18 Score=32.80 Aligned_cols=14 Identities=36% Similarity=0.748 Sum_probs=9.4
Q ss_pred hHHHHHHHHhHHHH
Q 045616 246 HEMDDLMKQIAEDK 259 (671)
Q Consensus 246 ~eie~l~KqlaEEK 259 (671)
.+||.|+..|+.+-
T Consensus 21 ~eVD~fl~~l~~~~ 34 (131)
T PF05103_consen 21 DEVDDFLDELAEEL 34 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777776654
No 187
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=42.50 E-value=3.4e+02 Score=26.77 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhhh
Q 045616 231 RVKIKELLRDQQAD 244 (671)
Q Consensus 231 r~~I~eL~~E~~s~ 244 (671)
..+|+.|+++|...
T Consensus 26 ~~~Ir~Li~~Q~~~ 39 (150)
T PF10454_consen 26 LQRIRRLIKEQHDH 39 (150)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777776433
No 188
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.39 E-value=3e+02 Score=32.06 Aligned_cols=69 Identities=25% Similarity=0.389 Sum_probs=45.8
Q ss_pred cccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045616 208 SLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERK 286 (671)
Q Consensus 208 ~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk 286 (671)
+.+...+.+. |..|-.++..-|.++..|+++.+.-+.|-+.|.++- ..-..+|..+|+..+.||..|+.
T Consensus 51 GiegDTP~DT--lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~--------~~id~~i~~av~~~~~~~~~~~~ 119 (472)
T TIGR03752 51 GIEGDTPADT--LRTLVAEVKELRKRLAKLISENEALKAENERLQKRE--------QSIDQQIQQAVQSETQELTKEIE 119 (472)
T ss_pred CCCCCCccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHhhhHHHHHHHH
Confidence 4444444432 577777788888888888888777666666664433 22356788888888877777653
No 189
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.29 E-value=4.4e+02 Score=27.84 Aligned_cols=50 Identities=12% Similarity=0.269 Sum_probs=21.6
Q ss_pred HHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhH
Q 045616 204 NRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIA 256 (671)
Q Consensus 204 nrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla 256 (671)
|..||.. +..--.|+.-|+.-+. +...+-.+++||.....+-..-|++|+
T Consensus 4 ~~Fwg~~--~~G~~~L~~r~k~g~~-~~kel~~f~keRa~iEe~Yak~L~kLa 53 (269)
T cd07673 4 ENFWGEK--NSGFDVLYHNMKHGQI-STKELSDFIRERATIEEAYSRSMTKLA 53 (269)
T ss_pred hcccCCC--CcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667654 3222233333333322 233444455666554444444444443
No 190
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=42.28 E-value=4.5e+02 Score=29.90 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRK 297 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 297 (671)
+.+..|..|+..-...+..++.+- ...|..+|++. -+.|...+..+.+.=.-..-....+..+..+
T Consensus 11 ~~~~~~~~e~~~i~~e~e~~i~~~------~~~l~~~l~~~--------d~~i~~~~~~l~~d~~l~~~~~~~l~~~w~~ 76 (473)
T PF14643_consen 11 KALESFHEELASISEEVEPLILEA------GEDLKQKLAES--------DEEIEEIFSKLEDDSALLEYSIQDLLELWDE 76 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhh--------HHHHHHHHHHhcCchhHHHhhHHHHHHHHHH
Confidence 445566666655555555555443 33444444333 4555566666555544555566666666666
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Q 045616 298 LARELSEVKST---LSNALRELEGERRSRKLLEELCDEFAIGIKD 339 (671)
Q Consensus 298 L~~ELsE~Kss---~~~alkelE~ERKaRellE~vCDELAkgI~e 339 (671)
++....--+.. |...+.++|.+|. .-|..+|..++..+.+
T Consensus 77 v~~~~~~r~~~I~~l~~~L~~~E~~R~--~~l~~~l~~~~~~L~~ 119 (473)
T PF14643_consen 77 VAEHSQKRKQWIKELDEDLEELEKERA--DKLKKVLRKYVEILEK 119 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 66643333333 3345555666654 4456666666655443
No 191
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=42.06 E-value=6.1e+02 Score=29.45 Aligned_cols=60 Identities=23% Similarity=0.274 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045616 263 KSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRS 322 (671)
Q Consensus 263 KsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKa 322 (671)
-...-+.|...|+.|-+-|+.|-..++.++....++..-|..++.....+..+++.=+..
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556788889999999999999999999999999998888888888887777765555
No 192
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.05 E-value=4.4e+02 Score=27.73 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=41.8
Q ss_pred HHHhHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 045616 252 MKQIAEDKLIRKSKE-QDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSE 304 (671)
Q Consensus 252 ~KqlaEEK~awKsKE-~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE 304 (671)
.|+...+|+-++++- .+||..|+++|.+==..|..+..+.+.+-.-|-.|+..
T Consensus 140 ~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~r 193 (230)
T cd07625 140 SKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKE 193 (230)
T ss_pred HHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777888776553 67999999999987788888888888888888888753
No 193
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=41.09 E-value=5.4e+02 Score=28.52 Aligned_cols=104 Identities=19% Similarity=0.371 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh--HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQI--AEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLH 295 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql--aEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln 295 (671)
.++-.++.+|.+|+.+|+|+++--+..+..+...+-+- .||+++ -++.| =-=+|++++.++
T Consensus 179 L~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~--------------QlqsE---N~LLrQQLddA~ 241 (305)
T PF14915_consen 179 LALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLS--------------QLQSE---NMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHH---HHHHHHHHHHHH
Confidence 34667778888888888888887776666665444321 122221 11111 123566666666
Q ss_pred HHHH-HH--HHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHhhcc
Q 045616 296 RKLA-RE--LSEVKSTLSNALRELEGERRSRKL-LEELCDEFAIGIK 338 (671)
Q Consensus 296 ~KL~-~E--LsE~Kss~~~alkelE~ERKaRel-lE~vCDELAkgI~ 338 (671)
.|-- +| +.++.--|...++.|--|.....+ ||+=-.||..+..
T Consensus 242 ~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n 288 (305)
T PF14915_consen 242 NKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECN 288 (305)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6652 44 666666666666665555444443 4544444444433
No 194
>PRK14162 heat shock protein GrpE; Provisional
Probab=41.01 E-value=4.2e+02 Score=27.26 Aligned_cols=47 Identities=15% Similarity=0.252 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhh
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKS 264 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKs 264 (671)
.-+..|+.+|...+.++.+|...-....-+.+.+.|+...|+...+.
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~ 85 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIK 85 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888766666667777777777666544433
No 195
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=40.60 E-value=6.5e+02 Score=31.95 Aligned_cols=115 Identities=22% Similarity=0.177 Sum_probs=70.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh------hHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCcc
Q 045616 289 KRSESLHRKLARELSEVKSTLSNALRE-LEGERR------SRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQ 361 (671)
Q Consensus 289 rr~E~ln~KL~~ELsE~Kss~~~alke-lE~ERK------aRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~ee 361 (671)
.+++..-.+|-+=|.|+...=.++||+ +|+|.| .+..||++-. ++.| -||+|.+.+++|-..-..++.-+
T Consensus 1059 ~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~--~~~~-kdK~e~er~~rE~n~s~i~~~V~ 1135 (1189)
T KOG1265|consen 1059 EHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKV--DKVI-KDKAERERRKRELNSSNIKEFVE 1135 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cccc-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556655556665555555554 444443 3444555544 3333 46899999999864444456678
Q ss_pred chhhHHhhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHhh
Q 045616 362 DHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAK 409 (671)
Q Consensus 362 ER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k 409 (671)
||+=|-++-.=|.|+.+-+-.+-..+|.+--- +|..|++......
T Consensus 1136 e~krL~~~~~k~~e~L~k~~~~~leql~e~~k---al~~e~~~~~e~~ 1180 (1189)
T KOG1265|consen 1136 ERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEK---ALDAEAEQEYEEQ 1180 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH
Confidence 88888888888888888777777666655322 2556666655544
No 196
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=40.47 E-value=2.1e+02 Score=27.11 Aligned_cols=95 Identities=21% Similarity=0.264 Sum_probs=60.6
Q ss_pred ccchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHH
Q 045616 193 LKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHA 272 (671)
Q Consensus 193 L~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~a 272 (671)
|.=||+|+.+==--=.|-|||-+. +--|+.++-.+-.+|-+|+.... +...
T Consensus 6 LqISKeLVDLQIe~~rL~Eq~EaE---~FELk~~vL~lE~rvleLel~~~--------------------------~~~~ 56 (108)
T PF14739_consen 6 LQISKELVDLQIETNRLREQHEAE---KFELKNEVLRLENRVLELELHGD--------------------------KAAP 56 (108)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcc--------------------------hhhH
Confidence 445677765421111246666544 67888888888888888877652 1112
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 045616 273 AVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSR 323 (671)
Q Consensus 273 ai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaR 323 (671)
.++++.+.+. -++...++|+.|+.-.|..+...-++++.|....
T Consensus 57 ~~~~~~~~~~-------~~~~~~~~l~~e~~~l~~~~~a~~k~~~~e~~k~ 100 (108)
T PF14739_consen 57 QIADLRHRLA-------EAQEDRQELQEEYVSLKKNYQALPKAFEAEVAKN 100 (108)
T ss_pred HHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 2223222222 3445677899999999999999999998887654
No 197
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=40.40 E-value=2.7e+02 Score=28.49 Aligned_cols=58 Identities=19% Similarity=0.400 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045616 265 KEQDRIHAAVQSVRDELEDERKLRKR--------SESLHRKLARELSEVKSTLSNALRELEGERRS 322 (671)
Q Consensus 265 KE~eki~aai~slk~ELe~ERk~Rrr--------~E~ln~KL~~ELsE~Kss~~~alkelE~ERKa 322 (671)
++-.+.+|.|..++..|++.|+-=++ .|.-=+.|...+.++-..+..-++++|..+|.
T Consensus 42 k~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~ 107 (215)
T PF07083_consen 42 KDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKE 107 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888888888875433 33344456666666667777777777766654
No 198
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=40.35 E-value=8.7e+02 Score=30.70 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045616 276 SVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNA 312 (671)
Q Consensus 276 slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~a 312 (671)
.+...|+-++..--.++..|.-|..-|.+++.+...+
T Consensus 449 di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~ 485 (980)
T KOG0980|consen 449 DIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRA 485 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555556666666565555555444
No 199
>PF13514 AAA_27: AAA domain
Probab=40.33 E-value=8.5e+02 Score=30.60 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045616 218 SLIKALKTELDHARVKI 234 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I 234 (671)
..+..|+.-|..++...
T Consensus 784 ~~~~~L~~~l~~a~~~~ 800 (1111)
T PF13514_consen 784 EALEALRARLEEAREAQ 800 (1111)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67788888887776543
No 200
>PRK14147 heat shock protein GrpE; Provisional
Probab=39.52 E-value=1.7e+02 Score=29.30 Aligned_cols=66 Identities=27% Similarity=0.340 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLA 299 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 299 (671)
...|..+|+..+.++.+|...-....-+++.+.|+...|+...+ ...+.+++
T Consensus 20 ~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~----------------------------~~a~~~~~ 71 (172)
T PRK14147 20 TDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQAR----------------------------KFANEKLL 71 (172)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Confidence 44577788888888888776666666677777777766653221 22346777
Q ss_pred HHHHHHHHHHHHHH
Q 045616 300 RELSEVKSTLSNAL 313 (671)
Q Consensus 300 ~ELsE~Kss~~~al 313 (671)
++|-.+--.|..|+
T Consensus 72 ~~lLpv~DnlerAl 85 (172)
T PRK14147 72 GELLPVFDSLDAGL 85 (172)
T ss_pred HHHhhhhhHHHHHH
Confidence 77777666666664
No 201
>PRK14153 heat shock protein GrpE; Provisional
Probab=39.38 E-value=4.1e+02 Score=27.41 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLA 299 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 299 (671)
+..+..|++..+.++.+|...-....-+++.+.|+...|+...+. ..+.+++
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~----------------------------~a~~~~~ 86 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRK----------------------------FVLEQVL 86 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHH
Confidence 455566666677777776655555555666666666555432222 2345666
Q ss_pred HHHHHHHHHHHHHHH
Q 045616 300 RELSEVKSTLSNALR 314 (671)
Q Consensus 300 ~ELsE~Kss~~~alk 314 (671)
++|..+--.|..|+.
T Consensus 87 ~~LLpv~DnLerAl~ 101 (194)
T PRK14153 87 LDLLEVTDNFERALE 101 (194)
T ss_pred HHHhhHHhHHHHHHh
Confidence 666666666666654
No 202
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=39.33 E-value=4.6e+02 Score=27.24 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcc
Q 045616 312 ALRELEGERRSRKLLEELCDEFAIGIK 338 (671)
Q Consensus 312 alkelE~ERKaRellE~vCDELAkgI~ 338 (671)
.-..|+...+..+=|-.+||||.-.++
T Consensus 180 Le~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 180 LEESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344667777777888999999986654
No 203
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=38.79 E-value=3.6e+02 Score=34.14 Aligned_cols=7 Identities=14% Similarity=0.335 Sum_probs=3.1
Q ss_pred HHHHhhc
Q 045616 202 VLNRIWS 208 (671)
Q Consensus 202 VLnrIW~ 208 (671)
+++.-|+
T Consensus 421 ~~~g~~g 427 (1021)
T PTZ00266 421 AVNGHYG 427 (1021)
T ss_pred cccCccc
Confidence 3444443
No 204
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=38.39 E-value=3.1e+02 Score=24.93 Aligned_cols=50 Identities=32% Similarity=0.462 Sum_probs=26.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 045616 281 LEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELC 330 (671)
Q Consensus 281 Le~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vC 330 (671)
.+.|++.+...+.-=.+|..+|..+++-..+.-..++.=++=...|+.|.
T Consensus 69 a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~ 118 (126)
T PF13863_consen 69 AEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVV 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555555555555555555555555555555445554443
No 205
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=38.32 E-value=2.1e+02 Score=33.81 Aligned_cols=94 Identities=23% Similarity=0.318 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhHHhhh
Q 045616 291 SESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISE 370 (671)
Q Consensus 291 ~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~MLqmAE 370 (671)
++.+=.+|.+||+.++.+.-+++ ++.|.+...+++.+ |+.-.++.+.+..+. .-+..+.+|.+
T Consensus 3 ad~~~~~L~~eL~~le~~ni~~l--~~s~~~v~~l~~~l-d~a~~e~d~le~~l~--------------~y~~~L~~~~~ 65 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAANIHSL--LESEKQVNSLMEYL-DEALAECDELESWLS--------------LYDVELNSVRD 65 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHH-HHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence 56778899999999999998888 44555666666555 222223222222221 12223333333
Q ss_pred hhhhhhhhhhHHHhhhc-ccchhhHHHHhhHHHHHHHHh
Q 045616 371 SWLDERMQMKLEEAQYG-LSEKNSIVDKLGFEIEAYLQA 408 (671)
Q Consensus 371 vWREERVQMKL~eAk~~-leeK~s~vdkL~~elEaFL~~ 408 (671)
+|..+|.+.. |+-+.+=-..|..||+.+|.+
T Consensus 66 -------di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~ 97 (701)
T PF09763_consen 66 -------DIEYIESQNNGLQVQSANQKLLLNELENLLDT 97 (701)
T ss_pred -------HHHHHHhhcCchhhHHHHHHHHHHHHHHHHHh
Confidence 4555555433 333444455666666666665
No 206
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=38.28 E-value=4.1e+02 Score=26.37 Aligned_cols=28 Identities=7% Similarity=0.326 Sum_probs=11.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045616 286 KLRKRSESLHRKLARELSEVKSTLSNAL 313 (671)
Q Consensus 286 k~Rrr~E~ln~KL~~ELsE~Kss~~~al 313 (671)
+.++.++.+-...-..|.+++.-..+.+
T Consensus 76 ~~~~eA~~~~~eye~~L~~Ar~EA~~ii 103 (181)
T PRK13454 76 ELKQKAVEAEKAYNKALADARAEAQRIV 103 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333333
No 207
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=38.22 E-value=2.7e+02 Score=24.26 Aligned_cols=66 Identities=21% Similarity=0.364 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 045616 231 RVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLS 310 (671)
Q Consensus 231 r~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~ 310 (671)
|.+|+++..+-...-+++..++++|..- ...+-.-+..-....||.+++..+-..|.
T Consensus 32 R~~i~~~~~~~~~l~k~~~~~l~~l~~~-----------------------~~~~~~~~~~k~~~~KL~~df~~~l~~fq 88 (102)
T PF14523_consen 32 REKIHQLIQKTNQLIKEISELLKKLNSL-----------------------SSDRSNDRQQKLQREKLSRDFKEALQEFQ 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------------------H----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544445555555555332 22233334444566789999988888888
Q ss_pred HHHHHHHHH
Q 045616 311 NALRELEGE 319 (671)
Q Consensus 311 ~alkelE~E 319 (671)
++.+.+..-
T Consensus 89 ~~q~~~~~~ 97 (102)
T PF14523_consen 89 KAQRRYAEK 97 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776543
No 208
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=38.09 E-value=3.7e+02 Score=25.71 Aligned_cols=71 Identities=18% Similarity=0.380 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSES 293 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ 293 (671)
.=+.+|..+|+..-..+.+|.+++ .++...+..|-.+..+.-. --.-+.+-|.++...|++|+-.+-.++.
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqk----d~L~~~l~~L~~q~~s~~q-r~~eLqaki~ea~~~le~eK~ak~~l~~ 86 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQK----DQLRNALQSLQAQNASRNQ-RIAELQAKIDEARRNLEDEKQAKLELES 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999997776 4577777777666654433 3344566677777777776555434443
No 209
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=37.95 E-value=5e+02 Score=27.19 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhh-hhHHHHHHHHHHHHHHH--HHHHHH------------Hhhhh
Q 045616 227 LDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRK-SKEQDRIHAAVQSVRDE--LEDERK------------LRKRS 291 (671)
Q Consensus 227 L~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awK-sKE~eki~aai~slk~E--Le~ERk------------~Rrr~ 291 (671)
++.-|.++.++.++- .++..=..=||+.-| .---.-|+.+||+|.+. +.-||= .-+..
T Consensus 7 ~~ekr~~l~eIf~es-------kDff~LkelEKlG~kKgIv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~a~~~~ 79 (203)
T KOG3433|consen 7 SDEKRMILLEIFQES-------KDFFQLKELEKLGSKKGIVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSEAICDR 79 (203)
T ss_pred hHHHHHHHHHHHHhh-------HhHHHHHHHHHhCCccceehhHHHHHHHHHhccchHHHHHhcccccccccchHHHHHH
Confidence 566677777777664 223322333444333 22334456667776653 222221 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhh
Q 045616 292 ESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNW 355 (671)
Q Consensus 292 E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~ 355 (671)
++.-..|-.+|+....-.....+-.|++++.|+--|+--|||++.....+.+++.|+-+..+..
T Consensus 80 ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 80 KSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566667777666666667788999999999999999999998888888888887766554
No 210
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=37.90 E-value=4.7e+02 Score=26.90 Aligned_cols=150 Identities=20% Similarity=0.270 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHH------HHHHHHHHHHHHhhhhH
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQ------SVRDELEDERKLRKRSE 292 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~------slk~ELe~ERk~Rrr~E 292 (671)
+|+||+. -|.-|+.|+=|+.-....+..|.+..+.-|-++.+...++-.+.-. ++-..|. -+|
T Consensus 2 visALK~----LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~-------aAE 70 (178)
T PF14073_consen 2 VISALKN----LQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLS-------AAE 70 (178)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHH-------HHH
Confidence 5666654 4678888988888888888888777777776665433332211111 1111111 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-------ccccHHHHHHHhhhchhhhccCCccchhh
Q 045616 293 SLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIG-------IKDYDQELHALKQKSDKNWTGKGEQDHLI 365 (671)
Q Consensus 293 ~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkg-------I~edkaEVe~LKres~k~~~ee~eeER~M 365 (671)
+=-+.|-+.|.-++.-+..| |.||.+ ++|.- ..|-++ |..--..++.|-+++.+.-..-.--|.+|
T Consensus 71 tRCslLEKQLeyMRkmv~~a----e~er~~--~le~q-~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki 143 (178)
T PF14073_consen 71 TRCSLLEKQLEYMRKMVESA----EKERNA--VLEQQ-VSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKI 143 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhhH--HHHHH-HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555444333333 333322 22221 112122 11112333444445433321112357788
Q ss_pred HHhhhhhhhhhhhhhHHHhhh
Q 045616 366 LHISESWLDERMQMKLEEAQY 386 (671)
Q Consensus 366 LqmAEvWREERVQMKL~eAk~ 386 (671)
-++=+-+.+|-=|-||+..|.
T Consensus 144 ~~LE~KL~eEehqRKlvQdkA 164 (178)
T PF14073_consen 144 KELEEKLQEEEHQRKLVQDKA 164 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888899988988887665
No 211
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=37.55 E-value=5e+02 Score=31.38 Aligned_cols=32 Identities=44% Similarity=0.519 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 045616 269 RIHAAVQSVRDELEDERKLRKRSESLHRKLAREL 302 (671)
Q Consensus 269 ki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~EL 302 (671)
+.++++. ++||+.++..|-|+|.--+||-+|-
T Consensus 638 R~~a~~E--Ree~eRl~~erlrle~qRQrLEREr 669 (940)
T KOG4661|consen 638 RRKAAVE--REELERLKAERLRLERQRQRLERER 669 (940)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 5556666666666666555554444
No 212
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=37.47 E-value=4.9e+02 Score=26.95 Aligned_cols=7 Identities=14% Similarity=0.320 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 045616 327 EELCDEF 333 (671)
Q Consensus 327 E~vCDEL 333 (671)
+.+|..|
T Consensus 195 ~~~~~~l 201 (239)
T cd07658 195 YTCCVRL 201 (239)
T ss_pred HHHHHHH
Confidence 3333333
No 213
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=37.45 E-value=4.6e+02 Score=32.97 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=26.1
Q ss_pred hhhHHhhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHhhh
Q 045616 363 HLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKR 410 (671)
Q Consensus 363 R~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k~ 410 (671)
-+|=.+-+..-+.|-|.|+.+--+ |--.++.|+.|++.+=.--+
T Consensus 1066 aemdeik~~~~edrakqkei~k~L----~ehelenLrnEieklndkIk 1109 (1424)
T KOG4572|consen 1066 AEMDEIKDGKCEDRAKQKEIDKIL----KEHELENLRNEIEKLNDKIK 1109 (1424)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh
Confidence 344455555556666666665433 23456788888888754433
No 214
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=37.03 E-value=5.8e+02 Score=27.71 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=10.8
Q ss_pred hhcccchhhHHHHhhHHHHHHH
Q 045616 385 QYGLSEKNSIVDKLGFEIEAYL 406 (671)
Q Consensus 385 k~~leeK~s~vdkL~~elEaFL 406 (671)
.....|=|+++=++.-=|.+..
T Consensus 165 ~V~W~EINAA~Gq~~LLL~~la 186 (314)
T PF04111_consen 165 PVEWNEINAAWGQTALLLQTLA 186 (314)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHH
Confidence 3444555666666655555543
No 215
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=36.89 E-value=7.9e+02 Score=33.26 Aligned_cols=70 Identities=17% Similarity=0.299 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHH----HhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHH
Q 045616 274 VQSVRDELEDERK----LRKRSE---SLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQE 343 (671)
Q Consensus 274 i~slk~ELe~ERk----~Rrr~E---~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaE 343 (671)
+..++.+|+.+.. .+..-| ..|..+..+|..++..|.+|..+|..=++.+...+..|+++.+-+.+-+.-
T Consensus 1027 ~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~ 1103 (1822)
T KOG4674|consen 1027 IEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDA 1103 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHH
Confidence 4555556655522 222222 246667778888888889999999999999999999999998887764433
No 216
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=36.84 E-value=4.2e+02 Score=26.06 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=35.3
Q ss_pred hhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHH-hhhhHHHHHHH
Q 045616 245 RHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDEL-EDERKL-RKRSESLHRKL 298 (671)
Q Consensus 245 ~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL-e~ERk~-Rrr~E~ln~KL 298 (671)
+-||.+|+|.|.+-+--+-.+--..+...+..+++.+ ..-..+ -.++..++.+|
T Consensus 20 qgEI~~FvkEFE~KRgdRE~~~L~~~~~~~~e~~e~~lp~~~~~~~~~L~~l~~~l 75 (145)
T PF14942_consen 20 QGEIRYFVKEFEEKRGDREVRVLENLTEMISETNEHILPRCIELMQQNLEQLLERL 75 (145)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4578889999976666666666667777777777655 444443 33555555555
No 217
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=36.53 E-value=3.8e+02 Score=25.68 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 216 NVSLIKALKTELDHARVKIKELLRD 240 (671)
Q Consensus 216 ~~Slv~aLk~EL~~Ar~~I~eL~~E 240 (671)
|-..|-||--||++++.+|.+|.++
T Consensus 65 nP~tvLALLDElE~~~~~i~~~~~~ 89 (139)
T PF13935_consen 65 NPATVLALLDELERAQQRIAELEQE 89 (139)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466899999999999999999877
No 218
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=35.83 E-value=93 Score=37.21 Aligned_cols=49 Identities=31% Similarity=0.460 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045616 231 RVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKL 287 (671)
Q Consensus 231 r~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~ 287 (671)
|+++..|.+|++.. +..+..+..+-|. -...|-++++.+||. ||||||-
T Consensus 3 RdkL~~Lq~ek~~E---~~~l~~~~~~lk~-~~~~el~~Lk~~vqk----LEDEKKF 51 (654)
T PF09798_consen 3 RDKLELLQQEKQKE---RQALKSSVEELKE-SHEEELNKLKSEVQK----LEDEKKF 51 (654)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHH-HhHHHHHHHHHHHHH----HHHHHHH
Confidence 66788888887544 4444444433332 223455677777877 7888874
No 219
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=35.76 E-value=4.1e+02 Score=27.79 Aligned_cols=84 Identities=18% Similarity=0.321 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHH
Q 045616 265 KEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQEL 344 (671)
Q Consensus 265 KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEV 344 (671)
.+-+.+...++.++...+.-..+|..+..+-..++.++.........+-+.+.+.-+ .+...|-.++....+.-.+|
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~---~l~~~~~k~~~~l~~l~~~v 144 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQK---ELSAECSKLNNELNQLLGEV 144 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777777777777776666555555544333 37777888887777766666
Q ss_pred HHHhhhc
Q 045616 345 HALKQKS 351 (671)
Q Consensus 345 e~LKres 351 (671)
..+-.+.
T Consensus 145 ~~l~~~~ 151 (256)
T PF14932_consen 145 SKLASEL 151 (256)
T ss_pred HHHHHHH
Confidence 6555543
No 220
>PRK12704 phosphodiesterase; Provisional
Probab=35.40 E-value=7.8e+02 Score=28.71 Aligned_cols=15 Identities=47% Similarity=0.800 Sum_probs=6.5
Q ss_pred HHHHhhhhHHHHHHH
Q 045616 284 ERKLRKRSESLHRKL 298 (671)
Q Consensus 284 ERk~Rrr~E~ln~KL 298 (671)
|+++-+|.+.|++|.
T Consensus 88 E~rL~~Ree~Le~r~ 102 (520)
T PRK12704 88 EKRLLQKEENLDRKL 102 (520)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 221
>PF09636 XkdW: XkdW protein; InterPro: IPR019094 This entry includes the phage SPbeta protein YorD, the function of which is not known, It also contains the protein XkdW (P54342 from SWISSPROT) from the Phage-like element PBSX in Bacillus subtilis. XkdW is approximately 100 residues long and contains two alpha helices and two beta strands, and is probably monomeric. XkdW is expressed in bacteria but is probably viral in origin. Its function is unknown. PBSX, a defective prophage of B. subtilis, is a chromosomally based element which encodes a non-infectious phage-like particle with bactericidal activity. PBSX is induced by agents which elicit the SOS response [].; PDB: 2HG7_A.
Probab=35.23 E-value=13 Score=35.16 Aligned_cols=39 Identities=31% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 045616 273 AVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSN 311 (671)
Q Consensus 273 ai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~ 311 (671)
-++.+..+|..|+=.|+++|.++.-|++||+.+|..+..
T Consensus 66 qle~L~qeLaqekl~rkqle~~~~~Lg~ela~~kLe~l~ 104 (108)
T PF09636_consen 66 QLELLGQELAQEKLARKQLEELINNLGNELANLKLELLS 104 (108)
T ss_dssp ---------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999998876543
No 222
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=35.07 E-value=6.7e+02 Score=27.84 Aligned_cols=93 Identities=24% Similarity=0.407 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhhhhhhHHHHHHH--HhHHHH----HHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 045616 220 IKALKTELDHARVKIKE----LLRDQQADRHEMDDLMK--QIAEDK----LIRKSKEQDRIHAAVQSVRDELEDERKLRK 289 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~e----L~~E~~s~~~eie~l~K--qlaEEK----~awKsKE~eki~aai~slk~ELe~ERk~Rr 289 (671)
|.-|+.||+.-+.+-++ ...+-...+...+.|-+ +|.||. ..+=+.+-.-+.|----+..+|+.|+..+.
T Consensus 8 ia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~ke 87 (305)
T PF14915_consen 8 IAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKE 87 (305)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHH
Confidence 66788888876665443 23333333444444433 234442 334455555566666667889999999888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 290 RSESLHRKLARELSEVKSTLSNALRELEGE 319 (671)
Q Consensus 290 r~E~ln~KL~~ELsE~Kss~~~alkelE~E 319 (671)
|+|. |+.-..+-+..|++|.+.=
T Consensus 88 rLEt-------EiES~rsRLaaAi~d~dqs 110 (305)
T PF14915_consen 88 RLET-------EIESYRSRLAAAIQDHDQS 110 (305)
T ss_pred HHHH-------HHHHHHHHHHHHHhhHHHH
Confidence 7652 3333344444555555543
No 223
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=34.72 E-value=7.2e+02 Score=28.10 Aligned_cols=62 Identities=32% Similarity=0.413 Sum_probs=40.9
Q ss_pred HHHHHHhhc-ccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhH----HHHHHhhhh
Q 045616 200 LKVLNRIWS-LEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIA----EDKLIRKSK 265 (671)
Q Consensus 200 lkVLnrIW~-leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla----EEK~awKsK 265 (671)
-.||++|-+ ||..+-++ -.|....++|+-||....+-.-+ .-.+++-|.|+++ .-|..|--|
T Consensus 9 ~~~l~~I~~eLEkLN~sT-DdIN~~E~~Le~ar~~Fretqv~---~t~kl~el~Kk~~k~I~ksrpf~elk 75 (426)
T KOG2008|consen 9 EEVLPRIQGELEKLNQST-DDINRRETELEDARQKFRETQVE---ATVKLDELVKKIGKAIEKSRPFWELK 75 (426)
T ss_pred hHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 367888876 44444333 45899999999999998876544 3456777776664 344455443
No 224
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=34.52 E-value=4.2e+02 Score=31.19 Aligned_cols=47 Identities=30% Similarity=0.444 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 045616 275 QSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEE 328 (671)
Q Consensus 275 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~ 328 (671)
..|+-|+-+||.+| |+|.+-|+.|..--+ ..-|.|.+|||+|..+.+
T Consensus 531 ~ELkmd~lrerelr---eslekql~~ErklR~----~~qkr~kkEkk~k~k~qe 577 (641)
T KOG3915|consen 531 TELKMDFLRERELR---ESLEKQLAMERKLRA----IVQKRLKKEKKAKRKLQE 577 (641)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 35677777888888 567778888875322 333556678887765543
No 225
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=34.49 E-value=1e+03 Score=29.71 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhhhHH
Q 045616 310 SNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLE 382 (671)
Q Consensus 310 ~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWREERVQMKL~ 382 (671)
....++++.=+|.=+-|+..=|.|...|.+...|+..|++.+ .+++-+|--.-.--.++||+|.+.
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~-------~~~~~~mrd~~~~~~e~~~~~~~~ 284 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSS-------LEKEQELRDHLRTYAERRRETETT 284 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HhhhhhhcchhhhhHHHHHhhcch
Confidence 334445555555555555666778888888888888888421 123334444444455666666555
No 226
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=34.40 E-value=5.9e+02 Score=29.15 Aligned_cols=109 Identities=23% Similarity=0.308 Sum_probs=85.5
Q ss_pred cccccccchHHHHHHHHHhhcccccC-cccHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhhhHHHHHHH----H
Q 045616 188 ESRYNLKTSTELLKVLNRIWSLEEQH-ASNVSLIKALKTELDHA--------RVKIKELLRDQQADRHEMDDLMK----Q 254 (671)
Q Consensus 188 e~~~~L~TS~ELlkVLnrIW~leeq~-~s~~Slv~aLk~EL~~A--------r~~I~eL~~E~~s~~~eie~l~K----q 254 (671)
+..|.|+ ....++|.=+.+|.+.+ ..+-|=+..+-.+|.+. ..+|.+|++++..-..||+.+-. -
T Consensus 93 e~~y~lT--~~a~~Al~~l~~L~~~~~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ 170 (478)
T PF11855_consen 93 EEHYELT--PAAEKALRFLERLEERRFVGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEIDRLEAGDVPV 170 (478)
T ss_pred CeeEEeC--HHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 3445554 46678888888887775 46778888888888875 47899999999999999998843 3
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 045616 255 IAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSE 304 (671)
Q Consensus 255 laEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE 304 (671)
+.++. -.|++..+++-+.+=+.|=|+.+-..+.+|+.|-..+.+
T Consensus 171 ld~~~------~~er~~~i~~la~~L~~DFr~V~~~~r~l~r~lr~~i~~ 214 (478)
T PF11855_consen 171 LDDTQ------ARERARQILQLARELPADFRRVEDNFRELDRALRERIID 214 (478)
T ss_pred CCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33433 478889888888888899999999999999999888765
No 227
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=34.30 E-value=4e+02 Score=25.09 Aligned_cols=128 Identities=15% Similarity=0.228 Sum_probs=62.9
Q ss_pred chHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHH
Q 045616 195 TSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAV 274 (671)
Q Consensus 195 TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai 274 (671)
|..||-..|+.= ..-+.=..+++-|..+..+++...+...+|...--+.+.+++.+..++.+-.. .+
T Consensus 5 S~~eL~~Ll~d~-~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~------------~~ 71 (150)
T PF07200_consen 5 STEELQELLSDE-EKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYE------------EL 71 (150)
T ss_dssp TTHHHHHHHHH--HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH------------HH
T ss_pred CHHHHHHHHcCH-HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH------------HH
Confidence 455666665543 22222344555688888888888888888887766666677776666653211 11
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 275 QSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 275 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
+.++.+... +.++...+..+..-.- ++.-+.. +-.-.|+.|++||...-+.+-.|..+-++
T Consensus 72 ~~L~~~~~~---k~~~~~~l~~~~s~~~--l~~~L~~----------~~~e~eeeSe~lae~fl~g~~d~~~Fl~~ 132 (150)
T PF07200_consen 72 KELESEYQE---KEQQQDELSSNYSPDA--LLARLQA----------AASEAEEESEELAEEFLDGEIDVDDFLKQ 132 (150)
T ss_dssp HHHHHHHHH---HHHHHHHHHHCHHHHH--HHHHHHH----------HHHHHHHHHHHHC-S-SSSHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHccCCHHH--HHHHHHH----------HHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 222222211 1112222222222221 1111222 22335668999999988888888776554
No 228
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.19 E-value=5.4e+02 Score=26.53 Aligned_cols=121 Identities=19% Similarity=0.227 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHH
Q 045616 196 STELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQ 275 (671)
Q Consensus 196 S~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~ 275 (671)
.++|.|.+.-.=.-| +.+|-.+|.. |.-+-+.|..+.+++ ++.+..+|.|.-...-. --.-++.++.
T Consensus 41 ~~~fak~~~~la~~E-----~~~L~~~L~~-lae~~~~i~d~~q~q------v~~l~~~v~epLk~Y~~-l~k~~k~~~K 107 (211)
T cd07598 41 GDELAKSINAYADTE-----NPSLKQGLKN-FAECLAALQDYRQAE------VERLEAKVVQPLALYGT-ICKHARDDLK 107 (211)
T ss_pred HHHHHHHHHHHHhcc-----CHHHHHHHHH-HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 367888887773333 4455555543 556667777666665 55555555544211110 0001111111
Q ss_pred HHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 045616 276 SVRDELEDERKLRKRSESL---HRKLARELSEVKSTLSNALRELEGERRSRKLLEELCD 331 (671)
Q Consensus 276 slk~ELe~ERk~Rrr~E~l---n~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCD 331 (671)
....-=+.|.+.|+++|.+ |+---.++++++..+.++-.|++ |-.+.|.|+|..
T Consensus 108 ~~~~ar~~~~~~~~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~--r~s~~l~ee~~r 164 (211)
T cd07598 108 NTFTARNKELKQLKQLEKLRQKNPSDRQIISQAESELQKASVDAN--RSTKELEEQMDN 164 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 1111223344455666666 11012277788888888877664 455555555543
No 229
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=34.10 E-value=3.1e+02 Score=26.25 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHhhccc
Q 045616 273 AVQSVRDELEDERKLRKRSESL--HRKLARELSEVKSTLSNALREL-EGERRSRKLLEELCDEFAIGIKD 339 (671)
Q Consensus 273 ai~slk~ELe~ERk~Rrr~E~l--n~KL~~ELsE~Kss~~~alkel-E~ERKaRellE~vCDELAkgI~e 339 (671)
.|-.|-+|||.-.+-....+.. |..++..+.+....+..+-+-+ .+--..++..|.+|.++++-|.|
T Consensus 68 tvLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaE 137 (139)
T PF13935_consen 68 TVLALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAE 137 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 3444555555444444444444 4433333333333222222222 11123345667777777765544
No 230
>PRK01156 chromosome segregation protein; Provisional
Probab=33.73 E-value=9.3e+02 Score=29.14 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=10.3
Q ss_pred chHHHHHHHHHhhccc
Q 045616 195 TSTELLKVLNRIWSLE 210 (671)
Q Consensus 195 TS~ELlkVLnrIW~le 210 (671)
++.+..++|.+|-+++
T Consensus 147 ~~~~r~~~ld~~~~~~ 162 (895)
T PRK01156 147 DPAQRKKILDEILEIN 162 (895)
T ss_pred CHHHHHHHHHHHhChH
Confidence 4567777777775544
No 231
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=33.35 E-value=6.2e+02 Score=26.93 Aligned_cols=18 Identities=6% Similarity=0.191 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045616 222 ALKTELDHARVKIKELLR 239 (671)
Q Consensus 222 aLk~EL~~Ar~~I~eL~~ 239 (671)
.|..++...+.+|..+.+
T Consensus 148 ~l~~~i~~~~~~i~~~~~ 165 (423)
T TIGR01843 148 LILAQIKQLEAELAGLQA 165 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 232
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=33.14 E-value=2.4e+02 Score=26.17 Aligned_cols=62 Identities=24% Similarity=0.397 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 045616 226 ELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEV 305 (671)
Q Consensus 226 EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~ 305 (671)
+|...+.+..++++++.....||+.|...|=+|- .. +| .++|+-|-.+|.-|..|.++|.|+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEA-------N~----MV-------a~ar~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEA-------NK----MV-------ADARRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH----HH-------HHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH----HH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888899999999887774 11 22 567888888888888888888654
No 233
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.13 E-value=2.2e+02 Score=24.78 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=10.4
Q ss_pred hccccHHHHHHHhhh
Q 045616 336 GIKDYDQELHALKQK 350 (671)
Q Consensus 336 gI~edkaEVe~LKre 350 (671)
.|.+.++|++.|+++
T Consensus 48 e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 48 ENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355667777777776
No 234
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.84 E-value=8.3e+02 Score=28.26 Aligned_cols=63 Identities=21% Similarity=0.177 Sum_probs=38.5
Q ss_pred ccccchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHH
Q 045616 191 YNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAE 257 (671)
Q Consensus 191 ~~L~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaE 257 (671)
..|-.+..-+.+|.++-++. .-..-+..+..++..++..++++..++....++++.+.-++.|
T Consensus 138 ~~l~~~~~~~~lLD~~~~~~----~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~E 200 (563)
T TIGR00634 138 QLLFRPDEQRQLLDTFAGAN----EKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEE 200 (563)
T ss_pred HHhcCHHHHHHHHHHhcCch----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45556677777777774421 1123345556667777777777777666666777776666543
No 235
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=32.30 E-value=7.8e+02 Score=29.05 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 045616 229 HARVKIKELLRDQQADRH 246 (671)
Q Consensus 229 ~Ar~~I~eL~~E~~s~~~ 246 (671)
.-+..|+||+.|++.++-
T Consensus 88 ~l~~Kl~eLE~e~k~d~v 105 (508)
T PF00901_consen 88 GLQRKLKELEDEQKEDEV 105 (508)
T ss_pred HHHHHHHHHHHHHhhHHH
Confidence 346678888888876653
No 236
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=32.25 E-value=1e+02 Score=29.31 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045616 294 LHRKLARELSEVKSTLSNALR 314 (671)
Q Consensus 294 ln~KL~~ELsE~Kss~~~alk 314 (671)
...++.++|-.+--.|..++.
T Consensus 59 ~~~~~~~~ll~v~D~l~~a~~ 79 (165)
T PF01025_consen 59 ALEKFLKDLLPVLDNLERALE 79 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777666666644
No 237
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=32.15 E-value=6.3e+02 Score=26.69 Aligned_cols=43 Identities=9% Similarity=0.137 Sum_probs=21.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHH
Q 045616 287 LRKRSESLHRKLARELSEVKSTLSNALRELEGERRS-RKLLEELCDEF 333 (671)
Q Consensus 287 ~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKa-RellE~vCDEL 333 (671)
.++.+|.++.|+.+ ++.....+|+.|...+.. -+-|..+|+.|
T Consensus 155 t~k~leK~~~k~~k----a~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~ 198 (269)
T cd07673 155 TQREIEKAAVKSKK----ATESYKLYVEKYALAKADFEQKMTETAQKF 198 (269)
T ss_pred CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777666655 333455555555444321 12344445444
No 238
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=32.05 E-value=2.8e+02 Score=32.19 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=11.0
Q ss_pred CCCccchhhhhhhhhhhhh
Q 045616 123 PESASSLRRHIAQSLIQHH 141 (671)
Q Consensus 123 p~s~~s~rR~v~~sl~qh~ 141 (671)
|.+..++..+| +|+.|..
T Consensus 42 P~~~e~l~~rv-~slsq~N 59 (552)
T KOG2129|consen 42 PSPGESLGARV-SSLSQRN 59 (552)
T ss_pred CCCHHHHHHHH-HHHHhhh
Confidence 45556788885 4566543
No 239
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=31.87 E-value=1.5e+02 Score=25.37 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERK 286 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk 286 (671)
-+..++.++..+|..+..|+.-..-+...|+.+++.+.+-.. .-...+...+-.+.+.|.-|-|
T Consensus 60 ~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~----~l~~~~~~~~~~~~~~LtpeQR 123 (125)
T PF13801_consen 60 EMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQA----ELRQERLEHLLEIRAVLTPEQR 123 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTT-GGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCHHHh
Confidence 466777777777777777777777777777777666655432 2222333334445555554433
No 240
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=31.47 E-value=5.5e+02 Score=26.33 Aligned_cols=38 Identities=21% Similarity=0.457 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQI 255 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql 255 (671)
.++..|..+|...+.+|.++-.+|+..+.+.-.-++.|
T Consensus 143 ~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~L 180 (221)
T PF05700_consen 143 AMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYL 180 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34566666666666666666666666655555555544
No 241
>PLN02372 violaxanthin de-epoxidase
Probab=31.46 E-value=4.6e+02 Score=30.36 Aligned_cols=55 Identities=40% Similarity=0.552 Sum_probs=40.3
Q ss_pred HHHHHHHH-HHHHhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045616 276 SVRDELED-ERKLRKRSESLHRK--LARELSEVKSTLSNALRELEGERRSRKLLEELCDE 332 (671)
Q Consensus 276 slk~ELe~-ERk~Rrr~E~ln~K--L~~ELsE~Kss~~~alkelE~ERKaRellE~vCDE 332 (671)
.+..||+. -+++++..+.+=.+ |+..|.+++.-..+.+++|-+|-+ ++|+++-.|
T Consensus 383 ~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~--~~l~~~~~~ 440 (455)
T PLN02372 383 QIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEK--ELLEKLKME 440 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHH
Confidence 34555554 46788888889999 999999999999999998876644 455544333
No 242
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=31.39 E-value=7.5e+02 Score=27.29 Aligned_cols=13 Identities=23% Similarity=0.023 Sum_probs=5.9
Q ss_pred ccchhhHHHHhhH
Q 045616 388 LSEKNSIVDKLGF 400 (671)
Q Consensus 388 leeK~s~vdkL~~ 400 (671)
+++.|..+|.++.
T Consensus 135 ~~~~y~~~d~~q~ 147 (332)
T TIGR01541 135 LHAYYAAEDALQG 147 (332)
T ss_pred HHHHHHHHHHHHh
Confidence 3444555554443
No 243
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.22 E-value=2.6e+02 Score=25.15 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH---HHHhHHHHHHhhhhHHHHHHHHHH
Q 045616 215 SNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDL---MKQIAEDKLIRKSKEQDRIHAAVQ 275 (671)
Q Consensus 215 s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l---~KqlaEEK~awKsKE~eki~aai~ 275 (671)
..|--|.-|++|++.-.-.-+.|.+|.+..++..+.| -.||-+|-..| |++|++.+-
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~W----QerlrsLLG 74 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGW----QERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHh
Confidence 3445677888888888877788888877666655555 45788888888 456665543
No 244
>PRK10698 phage shock protein PspA; Provisional
Probab=30.81 E-value=5.3e+02 Score=26.65 Aligned_cols=93 Identities=13% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----------cc
Q 045616 270 IHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIG-----------IK 338 (671)
Q Consensus 270 i~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkg-----------I~ 338 (671)
|.-.|+.|.+.|..=|+.--+.=...++|.+++.+....+.+. +++++..|..==++||+. |.
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~------e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEW------QEKAELALRKEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_pred ccHHHHHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHH
Q 045616 339 DYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAY 405 (671)
Q Consensus 339 edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaF 405 (671)
.++.+++.......+.. ..+.+|...|+.+
T Consensus 103 ~l~~~~~~~~~~~~~L~-------------------------------------~~l~~L~~ki~ea 132 (222)
T PRK10698 103 TLEHEVTLVDETLARMK-------------------------------------KEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHHHH
No 245
>PRK14155 heat shock protein GrpE; Provisional
Probab=30.40 E-value=6.4e+02 Score=26.22 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 045616 221 KALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLAR 300 (671)
Q Consensus 221 ~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ 300 (671)
..|..+|+..+.++.+|...-....-+++.+.|+...|+...+ .-...++++
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~----------------------------~~a~~~~~~ 67 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDAR----------------------------AYAIQKFAR 67 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHH
Confidence 5566677777777777766666666666666666665543222 234556777
Q ss_pred HHHHHHHHHHHHHHHH
Q 045616 301 ELSEVKSTLSNALREL 316 (671)
Q Consensus 301 ELsE~Kss~~~alkel 316 (671)
+|..+--.|..|+.-.
T Consensus 68 ~LLpV~DnLerAl~~~ 83 (208)
T PRK14155 68 DLLGAADNLGRATAAS 83 (208)
T ss_pred HHhhHHhhHHHHHhcc
Confidence 7777777777776544
No 246
>PF13514 AAA_27: AAA domain
Probab=30.28 E-value=1.2e+03 Score=29.34 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 045616 224 KTELDHARVKIKELLRDQQADRHEMDDLMKQI 255 (671)
Q Consensus 224 k~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql 255 (671)
..+|+.++..+..+..........+...+..+
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 648 (1111)
T PF13514_consen 617 AEELRAARAELEALRARRAAARAALAAALAAL 648 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555555555555555555555555555443
No 247
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=30.22 E-value=2.3e+02 Score=24.88 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=40.4
Q ss_pred cccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHH
Q 045616 210 EEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSV 277 (671)
Q Consensus 210 eeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~sl 277 (671)
+.+=...|--|..|++|++.-+.....|..+...- ..-..++.+|+.+|+. +|++.|.-|
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L----~~en~~L~~e~~~~~~----rl~~LL~kl 69 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEEL----KEENEQLKQERNAWQE----RLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHH----HHHHHHHhh
Confidence 34444566778999999999988888888666444 4444556688877754 555555544
No 248
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=30.17 E-value=1.5e+02 Score=31.78 Aligned_cols=52 Identities=21% Similarity=0.313 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhh-hhHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRK-SKEQDRIH 271 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awK-sKE~eki~ 271 (671)
+.-.+.|+++....|+.|..|.+....-.+..+++|.+++..|- +...++|.
T Consensus 48 ~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf~~~~~~~i~ 100 (298)
T PF11262_consen 48 ISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWFSSKDPEKIE 100 (298)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCChhhHH
Confidence 45677789999999999999999999999999999999999998 44555655
No 249
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=30.16 E-value=1.5e+02 Score=26.73 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=34.9
Q ss_pred ccccCcccHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHH
Q 045616 209 LEEQHASNVSL--IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLI 261 (671)
Q Consensus 209 leeq~~s~~Sl--v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~a 261 (671)
+-++++-.|.| |.-+..||++.++.|+.|++|--..+-.|-+|---||-||.+
T Consensus 15 fp~~~~p~m~l~svgd~e~eLerCK~sirrLeqevnkERFrmiYLQTlLAkErks 69 (79)
T PF09036_consen 15 FPDSEPPVMELRSVGDIEQELERCKASIRRLEQEVNKERFRMIYLQTLLAKERKS 69 (79)
T ss_dssp STTS-------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred CCccCCcHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33444433332 667899999999999999999877777777777777777643
No 250
>PRK14160 heat shock protein GrpE; Provisional
Probab=30.03 E-value=6.6e+02 Score=26.27 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHH
Q 045616 221 KALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLI 261 (671)
Q Consensus 221 ~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~a 261 (671)
..|+.+|......+.+|...-....-+.+.+.|+.+.|+..
T Consensus 64 ~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 104 (211)
T PRK14160 64 NKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEG 104 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444455555555544433
No 251
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=29.90 E-value=2.8e+02 Score=26.09 Aligned_cols=58 Identities=26% Similarity=0.367 Sum_probs=36.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc
Q 045616 282 EDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDY 340 (671)
Q Consensus 282 e~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~ed 340 (671)
+--.+-+.+-+.++..+-.++..+|.-+..+..+|+..|.-|.-.+ -||.||+.|..+
T Consensus 70 ~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~-eyd~La~~I~~~ 127 (139)
T PF05615_consen 70 EMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE-EYDALAKKINSQ 127 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcC
Confidence 3445555666666666666666666666666666666666666555 566666666553
No 252
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=29.86 E-value=6.7e+02 Score=26.29 Aligned_cols=164 Identities=12% Similarity=0.207 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045616 243 ADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRS 322 (671)
Q Consensus 243 s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKa 322 (671)
..+.+++.-|+++ +|.+..-..+-..-...+..|..++......+..++.--..+-.+...++.......++-+.=-..
T Consensus 5 r~k~Ele~rL~q~-eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e 83 (246)
T PF00769_consen 5 REKQELEERLRQM-EEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE 83 (246)
T ss_dssp HHCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHH
Q 045616 323 RKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEI 402 (671)
Q Consensus 323 RellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~el 402 (671)
..-.+..-..|...+..-..|+..|+.+...++ ....+...+|
T Consensus 84 ~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar-------------------------------------~~~~~ak~~L 126 (246)
T PF00769_consen 84 LREAEAEIARLEEESERKEEEAEELQEELEEAR-------------------------------------EDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHH
Q ss_pred HHHHHhhhccccCCCCCCcchhhhcccccccCCcccCCCCCCCCCcccccccCcccccCCCCC
Q 045616 403 EAYLQAKRMSASKRTDNTIPRDRRNSLESVPLNEAVSAPQAVGDEEDSAGSDSNCFELDKPRN 465 (671)
Q Consensus 403 EaFL~~k~~~~~k~~~~~~~~~~r~sleSv~ln~~~~~p~~~ddeddS~~SDlh~~Eln~~~~ 465 (671)
-.|+.+. .+|-...++.|.+.+.++.+..++-.+.||..++.
T Consensus 127 ~~~~~~~---------------------~~p~~~~v~~~~~~~~~~~~~~~~~~s~dl~~~~~ 168 (246)
T PF00769_consen 127 LEVMSAP---------------------PPPPHHPVAEPDEGDEDENDEENSEYSADLETDGD 168 (246)
T ss_dssp ----HTT---------------------S--GGGS------------------EEEE---T-T
T ss_pred HHHHhcc---------------------ccccccCCCCCCCCCcccccccccccccccccccc
No 253
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=29.83 E-value=8.7e+02 Score=27.59 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHhh
Q 045616 259 KLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSR--KLLEELCDEFAIG 336 (671)
Q Consensus 259 K~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaR--ellE~vCDELAkg 336 (671)
|..|+- -..-+..-=+.|+.+|++=.+.+++++.+..+.-+.|.+++.-....+.+...+-+.. +++++.=.|..+-
T Consensus 20 kfl~~P-i~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i 98 (445)
T PRK13428 20 RFVVPP-VRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERI 98 (445)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccccHHHHHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHH
Q 045616 337 IKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAY 405 (671)
Q Consensus 337 I~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaF 405 (671)
+..-+.+++..|+...... -..|-.+|=.-=+.=++-+|.++..+ ..++|++..+|.+|
T Consensus 99 ~~~a~~~Ie~ek~~a~~el------r~ei~~lAv~~A~kil~~~l~d~~~~----~~lId~~i~~l~~~ 157 (445)
T PRK13428 99 KVQGARQVQLLRAQLTRQL------RLELGHESVRQAGELVRNHVADPAQQ----SATVDRFLDELDAM 157 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHcCCHHHH----HHHHHHHHHHhhcc
No 254
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.45 E-value=7.2e+02 Score=26.52 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDL 251 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l 251 (671)
-.+.++++|+..++..+-.+..+-...+.++-.+
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~ 64 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQL 64 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777777777666666654444444433
No 255
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=29.41 E-value=1.1e+03 Score=28.81 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=9.5
Q ss_pred cceee--EEEEEEeccCCCc
Q 045616 26 RATIK--FSILIVGLCHPPE 43 (671)
Q Consensus 26 ~~~~~--~~~~~~~~~~~~~ 43 (671)
..+|. |.--|..||.++-
T Consensus 16 ~~~~~~~f~~gi~lI~G~nG 35 (908)
T COG0419 16 DIDIEKLFDSGIFLIVGPNG 35 (908)
T ss_pred ccceeecCCCCeEEEECCCC
Confidence 44444 5545556665553
No 256
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=29.39 E-value=5.6e+02 Score=25.22 Aligned_cols=113 Identities=21% Similarity=0.288 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKL 298 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 298 (671)
-++.-+.+-+.-..||--|+++-.....+..++.+.. +--++.|..++++|+.=..-+++ |
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~da------------En~k~eie~L~~el~~lt~el~~-------L 71 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDA------------ENSKAEIETLEEELEELTSELNQ-------L 71 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 3456666666667777777777766666666655544 33445666677776654433333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 299 ARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 299 ~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
--||..+.+--....+++++.+..=.=||..+..|...|.+-+++...++.+
T Consensus 72 ~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~ 123 (140)
T PF10473_consen 72 ELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEE 123 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555556666666555566666666666666555554333333
No 257
>PRK14148 heat shock protein GrpE; Provisional
Probab=29.26 E-value=6.5e+02 Score=25.95 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLI 261 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~a 261 (671)
.-+.+|..+|...+..+.+|...-....-+++.+.|+...|+..
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~ 83 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSN 83 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777666556666666666666655543
No 258
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=29.22 E-value=1.2e+03 Score=28.81 Aligned_cols=210 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 045616 217 VSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHR 296 (671)
Q Consensus 217 ~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~ 296 (671)
+.-|..|+.||.++|..+.....| .|++....+.++.+ -..+|.--+
T Consensus 33 ~~~i~~l~~elk~~~~~~~~~~~e--------------------------~~rl~~~~~~~~~~-------~~~~e~~~~ 79 (717)
T PF09730_consen 33 QQRILELENELKQLRQELSNVQAE--------------------------NERLSQLNQELRKE-------CEDLELERK 79 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHH-------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHhhhchhhhccCCccchhhHHhhhhhh
Q 045616 297 KLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIG---IKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWL 373 (671)
Q Consensus 297 KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkg---I~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWR 373 (671)
+|-.|+.|.|..=.+.++||-.=--...-|-+.-.=|-.. ....|.|+..|.-+.+-.. .-+|+--+.=.|||
T Consensus 80 ~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~-~qlee~~rLk~iae--- 155 (717)
T PF09730_consen 80 RLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLN-SQLEEAARLKEIAE--- 155 (717)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---
Q ss_pred hhhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHhhhccccCCCCCCcchhhhcccccccCCcccCCCCCCCCCcccccc
Q 045616 374 DERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKRMSASKRTDNTIPRDRRNSLESVPLNEAVSAPQAVGDEEDSAGS 453 (671)
Q Consensus 374 EERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k~~~~~k~~~~~~~~~~r~sleSv~ln~~~~~p~~~ddeddS~~S 453 (671)
-+|.||=.+|..=-.+=.-|+-||..|+..-. ........-+++.+.+-.....-..+++|++...+
T Consensus 156 -----~qleEALesl~~EReqk~~LrkEL~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 222 (717)
T PF09730_consen 156 -----KQLEEALESLKSEREQKNALRKELDQHLNIES--------ISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENG 222 (717)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--------cccccchhhcccccccccccccccCCCCchhhhcc
Q ss_pred cCccc--------ccCCCCCccccccccccC
Q 045616 454 DSNCF--------ELDKPRNADLKLQRDEAV 476 (671)
Q Consensus 454 Dlh~~--------Eln~~~~~~~k~~~~~~~ 476 (671)
-+|.+ ..-+.....+......|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 253 (717)
T PF09730_consen 223 GLNGGPGLAKGNGDNRMSTPRKSESFSPAPS 253 (717)
T ss_pred hhhccchhcccccccccCCCCCCCCCCCCCc
No 259
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=29.12 E-value=5.8e+02 Score=25.33 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 045616 225 TELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSE 304 (671)
Q Consensus 225 ~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE 304 (671)
.=|+.=+..|...+.+=...+.+.+.++.++.+.-..+|..-++.+..+......+.+.. .+..+....+.+++
T Consensus 58 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~------~~~A~~e~~~~~ae 131 (181)
T PRK13454 58 AVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVA------IAKADAEIAAKAAE 131 (181)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 336777788888888888888888888888877777676666666666654444443322 23334455555555
Q ss_pred HHHHHHHH
Q 045616 305 VKSTLSNA 312 (671)
Q Consensus 305 ~Kss~~~a 312 (671)
++.-+.+.
T Consensus 132 a~~~I~~~ 139 (181)
T PRK13454 132 SEKRIAEI 139 (181)
T ss_pred HHHHHHHH
Confidence 54444333
No 260
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=29.01 E-value=7.3e+02 Score=29.61 Aligned_cols=186 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCccccCCCCCCCCCC---CCCccchhhhhhhhhhhhhhhhhccCCCCCCC-------------CcCCcCCccccccc
Q 045616 105 GLDLSHFLADPSPSSPEQ---PESASSLRRHIAQSLIQHHRAIERNNHALQPL-------------SPASYGSSMEMAPY 168 (671)
Q Consensus 105 ~~~l~~~l~dp~~~~~~q---p~s~~s~rR~v~~sl~qh~r~~~~~~~alqp~-------------Spas~~ssme~~~~ 168 (671)
+..+--++.-|+|++|+. |++-...-..-|+..+-||.+...-+|..+|- +|..+.+|...-..
T Consensus 412 ~n~~lr~~~~~~~~~ps~p~tPSs~~ads~n~a~~s~a~h~l~~kp~~h~tP~~~~q~~~p~~ppk~~kp~s~S~~~pNm 491 (661)
T KOG2070|consen 412 GNPTLRPHSVPSHTLPSHPVTPSSKHADSKNPAPLSPAYHTLPHKPSHHGTPHTTIQNWGPLEPPKTPKPWSLSCLRPNM 491 (661)
T ss_pred CCcccccccccccCCCCCCCCcccccccCCCCCCCCcccCcCCCCCCCCCCCCCCccccCCCCCCCCCCCcchhhcCCCc
Q ss_pred CCCCccCCCccccccccc----------------------------------ccccccccch---HHHHHHHHHhhcccc
Q 045616 169 NPAAAVTPTSSLDFKGRV----------------------------------GESRYNLKTS---TELLKVLNRIWSLEE 211 (671)
Q Consensus 169 ~~~~~~tpt~Sl~~k~R~----------------------------------~e~~~~L~TS---~ELlkVLnrIW~lee 211 (671)
+-++...|+--+|||-++ +-...++..- -+.||||..-+.=-.
T Consensus 492 Kfa~pL~~saa~g~~~~~ss~~k~stk~n~t~s~~~~~~~~~~~ps~~~~~~r~~t~a~~~~eie~q~lkvle~YCt~~~ 571 (661)
T KOG2070|consen 492 KFAPPLRPSAALGYKEDLSSRNKRSTKSNKTMSKLLPKRKPERKPSDEEFASRKSTAALEEDEIEAQILKVLEAYCTSAK 571 (661)
T ss_pred ccCCCCCcchhhhcCCCCcccccccccCcccHhhcCcccCCCCCCchhhhhhhccccccccccchhHHHHHHHHHhhcCC
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 045616 212 QHASNVSLIKALKTELDHARVKIKELLRDQQA------DRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDER 285 (671)
Q Consensus 212 q~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s------~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ER 285 (671)
.+.+.-+--..-..=+-.--..-+-|+.|-++ ..+.|-.-+.+|-++ -.-++.-.+-|+.-||.|+
T Consensus 572 ~qqt~~~s~~~~~~p~~l~~e~eki~~ee~r~~~~~vleekslvdtvyalkd~--------v~~lqqd~~kmkk~leeEq 643 (661)
T KOG2070|consen 572 TQQTLNSSNRKYSQPQVLLPEEEKILMEETRSNGQSVLEEKSLVDTVYALKDE--------VSELQQDNKKMKKVLEEEQ 643 (661)
T ss_pred CcCCcccchhhcccceehhhhHHHHHHHhcccccceeecccchhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHH
Q 045616 286 KLRKRSESLHRKL 298 (671)
Q Consensus 286 k~Rrr~E~ln~KL 298 (671)
|+|+++|.+=+|+
T Consensus 644 kaRrdLe~ll~k~ 656 (661)
T KOG2070|consen 644 KARRDLEKLLRKM 656 (661)
T ss_pred HHHHHHHHHHHHH
No 261
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=28.92 E-value=1.1e+03 Score=28.54 Aligned_cols=100 Identities=25% Similarity=0.259 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhH-HHHHHhhhhHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 045616 217 VSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIA-EDKLIRKSKEQD----RIHAAVQSVRDELEDERKLRKRS 291 (671)
Q Consensus 217 ~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla-EEK~awKsKE~e----ki~aai~slk~ELe~ERk~Rrr~ 291 (671)
++-+..|..+|.+.+..+.++..+-.+.+.+.+.|-+++. -.....+.+.-+ -++.-|+.++.+|...++.=+.+
T Consensus 181 ~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l 260 (670)
T KOG0239|consen 181 ESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKEL 260 (670)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777788888888888877777776666666655544 001111111111 11112455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 292 ESLHRKLARELSEVKSTLSNALREL 316 (671)
Q Consensus 292 E~ln~KL~~ELsE~Kss~~~alkel 316 (671)
+....++.+|+.+........+++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~L 285 (670)
T KOG0239|consen 261 NDQVSLLTREVQEALKESNTLQSDL 285 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444444333333
No 262
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=28.91 E-value=9.8e+02 Score=27.87 Aligned_cols=32 Identities=38% Similarity=0.487 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 045616 300 RELSEVKSTLSNALRELEGERRSRKLLEELCD 331 (671)
Q Consensus 300 ~ELsE~Kss~~~alkelE~ERKaRellE~vCD 331 (671)
+||.+-+..|.++.--|+.+++.+.+-|.+..
T Consensus 100 r~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~ 131 (459)
T KOG0288|consen 100 RELREQKAEFENAELALREMRRKMRIAERLAE 131 (459)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 56677778888888778878777777776665
No 263
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=28.87 E-value=7e+02 Score=26.15 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLA 299 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 299 (671)
|.-++.+|..|+..+-+++..++....+++.+. .....|.++-+.-+.+.-..|..++=.++
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~----~~~~k~e~~A~~Al~~g~E~LAr~al~~~-------------- 94 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQ----ARAEKLEEKAELALQAGNEDLAREALEEK-------------- 94 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH--------------
Confidence 677788888888888888888877776666543 44445666555555554444444433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 300 RELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 300 ~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
.....-+...-..|..-+...+-|+.--.+|-..|.+.++....++-.
T Consensus 95 ---~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 95 ---QSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222233444444555555556666666666555444
No 264
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.48 E-value=4.8e+02 Score=26.93 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 291 SESLHRKLARELSEVKSTLSNALRELEGE 319 (671)
Q Consensus 291 ~E~ln~KL~~ELsE~Kss~~~alkelE~E 319 (671)
++.-|.+|..||..++.-...+-.+++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666665555444444333
No 265
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=28.31 E-value=9.8e+02 Score=27.70 Aligned_cols=129 Identities=22% Similarity=0.344 Sum_probs=70.2
Q ss_pred HHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 239 RDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEG 318 (671)
Q Consensus 239 ~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ 318 (671)
++-....+++..|-.-+..||-.||.- ..+-++-|-+| +.. =.+..-|+-.| ..||++
T Consensus 257 kdi~~a~keL~~m~~~i~~eKP~WkKi----WE~EL~~VcEE----qqf----L~lQedL~~DL----------~dDL~k 314 (426)
T smart00806 257 KELETARKELKKMEEYIDIEKPIWKKI----WEAELDKVCEE----QQF----LTLQEDLIADL----------KEDLEK 314 (426)
T ss_pred HHHHHHHHHHHHHHHHHhhcChHHHHH----HHHHHHHHHHH----HHH----HHHHHHHHHHH----------HHHHHH
Confidence 334444455555555677889999862 22223333222 222 22333454444 347777
Q ss_pred HHhhHHHHHHHHHHHHhhcc------------------c----cHHHHHHHhhhchhhhccCCccchhhHHhhhhhhhhh
Q 045616 319 ERRSRKLLEELCDEFAIGIK------------------D----YDQELHALKQKSDKNWTGKGEQDHLILHISESWLDER 376 (671)
Q Consensus 319 ERKaRellE~vCDELAkgI~------------------e----dkaEVe~LKres~k~~~ee~eeER~MLqmAEvWREER 376 (671)
-..+=.++|..|.|=.++-+ + .--||..|+-+++.-.+ .+.=||-.|+
T Consensus 315 a~eTf~lVeq~~~eQ~k~~~~~~~~~~~l~i~~pg~~~~~kd~VL~EV~aL~PdHEsRLe--------AIErAEklR~-- 384 (426)
T smart00806 315 AEETFDLVEQCCEEQEKGPSKNRNKPVSLPVPTPGTFNDLKDQVLMEVRALKPDHESRLE--------AIERAEKLRE-- 384 (426)
T ss_pred HHHHHHHHHHHHHHHhhCcccccCCCccCCCCCCCChhHHHHHHHHHHHccCCChHHHHH--------HHHHHHHHHH--
Confidence 77777888888888776311 1 12255555555543221 1222332222
Q ss_pred hhhhHHHhhhcccchhhHHHHhhHHHHHHHHhhh
Q 045616 377 MQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKR 410 (671)
Q Consensus 377 VQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k~ 410 (671)
| |--|.-+|.++.||..|...++
T Consensus 385 ---k--------Ele~r~~d~Fq~ELg~FVe~~k 407 (426)
T smart00806 385 ---K--------ELEYRRVDEFEKELGNFVENGK 407 (426)
T ss_pred ---H--------HHHhccccHHHHHHHHHhccCC
Confidence 1 1125668999999999998865
No 266
>PRK14163 heat shock protein GrpE; Provisional
Probab=28.25 E-value=7.2e+02 Score=26.12 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 045616 221 KALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELE 282 (671)
Q Consensus 221 ~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe 282 (671)
..|+.+|+..+..+.+|...-....-+++.+.|+...|+..-+.--.+++-..|-.+-+.|+
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLe 104 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVG 104 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Confidence 45667777777777777766677777888888888888765555555554444444444443
No 267
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=28.22 E-value=9.7e+02 Score=27.59 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=23.0
Q ss_pred HHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 045616 249 DDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDE 284 (671)
Q Consensus 249 e~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~E 284 (671)
+.|-.++.+.+.+-+...-.-|.+.+..++.-|+.|
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e 193 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKE 193 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666666554
No 268
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=28.18 E-value=9.8e+02 Score=27.67 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHH
Q 045616 222 ALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKL 260 (671)
Q Consensus 222 aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~ 260 (671)
.|...+++.+.++..+++.......+++.++..+.|+.-
T Consensus 81 ~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~ 119 (448)
T COG1322 81 RLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELN 119 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445555555555555543
No 269
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=28.15 E-value=1.2e+03 Score=28.78 Aligned_cols=73 Identities=25% Similarity=0.308 Sum_probs=44.6
Q ss_pred cccccccccccccccchH-HHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 045616 180 LDFKGRVGESRYNLKTST-ELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLM 252 (671)
Q Consensus 180 l~~k~R~~e~~~~L~TS~-ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~ 252 (671)
...|.++-.+.--|.-.+ ||+....++=-+++++...=.-|..|+..|-.++.+..-|..+--.-+.+++.-.
T Consensus 283 ~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~ 356 (775)
T PF10174_consen 283 LAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKN 356 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334555444444444444 7777777775566665544566777777777777777777766655555555433
No 270
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=27.83 E-value=5.1e+02 Score=26.26 Aligned_cols=76 Identities=18% Similarity=0.403 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 045616 224 KTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKS----KEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLA 299 (671)
Q Consensus 224 k~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKs----KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~ 299 (671)
=.||++.|.+|++.+.+-..+- ....|+++|...+-+.++ .-..-|-++=..|++.|....-....+...|+.+-
T Consensus 71 F~eLq~tr~~I~eFi~~~K~Np-nY~~li~~Lt~~kd~k~sVt~SSNKSdI~aAN~~L~qAL~~Ak~~K~~~~~~~ks~K 149 (157)
T PF04778_consen 71 FNELQQTRKQIDEFINKNKNNP-NYAELIKKLTQKKDSKNSVTESSNKSDIEAANQELKQALNKAKTHKEQADNQNKSIK 149 (157)
T ss_pred HHHHHHHHHHHHHHHhhccCCc-cHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3689999999999999885444 566788888777655443 22334455555555555554444444444444333
Q ss_pred H
Q 045616 300 R 300 (671)
Q Consensus 300 ~ 300 (671)
.
T Consensus 150 ~ 150 (157)
T PF04778_consen 150 E 150 (157)
T ss_pred H
Confidence 3
No 271
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.80 E-value=7.6e+02 Score=26.24 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=29.8
Q ss_pred hHHHHHHHHhHHH-HH-HhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 045616 246 HEMDDLMKQIAED-KL-IRKSKEQDRIHAAVQSVRDELEDERKLR 288 (671)
Q Consensus 246 ~eie~l~KqlaEE-K~-awKsKE~eki~aai~slk~ELe~ERk~R 288 (671)
++-++|-+++..| .. +.|..-..| ++||+.|+..--.|..+-
T Consensus 35 KKqe~Le~ki~~e~e~~A~k~~tkNK-R~AlqaLkrKK~~E~qL~ 78 (221)
T KOG1656|consen 35 KKQEFLEKKIEQEVENNARKYGTKNK-RMALQALKRKKRYEKQLA 78 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHH
Confidence 4457888888887 33 666665654 688999888777776653
No 272
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=27.63 E-value=4e+02 Score=30.95 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=19.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH
Q 045616 281 LEDERKLRKRSESLHRKLAREL 302 (671)
Q Consensus 281 Le~ERk~Rrr~E~ln~KL~~EL 302 (671)
++.|+..|...+.+-+||.+||
T Consensus 284 ~~Ee~~~reen~rlQrkL~~e~ 305 (552)
T KOG2129|consen 284 RAEEVDHREENERLQRKLINEL 305 (552)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 5678888888999999999988
No 273
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.51 E-value=6.6e+02 Score=25.41 Aligned_cols=9 Identities=22% Similarity=0.505 Sum_probs=5.6
Q ss_pred chHHHHHHH
Q 045616 195 TSTELLKVL 203 (671)
Q Consensus 195 TS~ELlkVL 203 (671)
+-+|+|+.|
T Consensus 31 ~VKdvlq~L 39 (188)
T PF03962_consen 31 SVKDVLQSL 39 (188)
T ss_pred hHHHHHHHH
Confidence 556666665
No 274
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=27.45 E-value=9.1e+02 Score=27.02 Aligned_cols=11 Identities=27% Similarity=0.226 Sum_probs=4.9
Q ss_pred hhHHHhhhccc
Q 045616 379 MKLEEAQYGLS 389 (671)
Q Consensus 379 MKL~eAk~~le 389 (671)
-+|..++..++
T Consensus 298 ~~l~~~~~~l~ 308 (457)
T TIGR01000 298 QKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 275
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.24 E-value=4.7e+02 Score=27.48 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=8.2
Q ss_pred HHHHHHhhHHHHHHH
Q 045616 315 ELEGERRSRKLLEEL 329 (671)
Q Consensus 315 elE~ERKaRellE~v 329 (671)
.++-||+.=.++|.|
T Consensus 213 ~ie~erk~l~~lE~~ 227 (230)
T cd07625 213 KIEYERKKLSLLERI 227 (230)
T ss_pred HHHHHHHHHHHHHhc
Confidence 345566655556554
No 276
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=27.05 E-value=6.7e+02 Score=25.40 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhcccccCc-ccH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhH
Q 045616 197 TELLKVLNRIWSLEEQHA-SNV-SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKE 266 (671)
Q Consensus 197 ~ELlkVLnrIW~leeq~~-s~~-Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE 266 (671)
.+|-.+|.++ =+|++- ..+ .+-.-|+..|++|+.....|..+-+.-..+.+.+...|...-..|+..+
T Consensus 60 ~dLe~~l~rL--eEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee 129 (182)
T PF15035_consen 60 PDLEEALIRL--EEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEE 129 (182)
T ss_pred ccHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444478887 344443 232 3445588999999999999999999999999999888888778887533
No 277
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=27.04 E-value=3.2e+02 Score=28.83 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=22.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 045616 282 EDERKLRKRSESLHRKLARELSE-VKSTLSNALRELE 317 (671)
Q Consensus 282 e~ERk~Rrr~E~ln~KL~~ELsE-~Kss~~~alkelE 317 (671)
.+.+.+|+....+|.+|..|+.+ +..-+.++.+.|.
T Consensus 101 ~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y~ 137 (234)
T cd07686 101 KDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSYR 137 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44567777777777777777765 4444555544443
No 278
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=26.84 E-value=8.5e+02 Score=26.47 Aligned_cols=89 Identities=21% Similarity=0.411 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRK 297 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 297 (671)
..|..|+.+|..-+..+.+- ..+.+.+|+.+..++. +-++.++.++....+++.+.+ .+......
T Consensus 15 ~~V~~m~~~L~~~~~~L~~k-------~~e~e~ll~~i~~~~~-----~a~~~~~~~~~ee~~~~~~~~---ei~~~~~~ 79 (344)
T PF12777_consen 15 EQVEEMQEELEEKQPELEEK-------QKEAEELLEEIEKEQE-----EAEKKKAIVEEEEEEAEKQAK---EIEEIKEE 79 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-----HHHHHH-HHHHHHHHHHHHHH---HHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 34666666666555443332 2456677777765532 112222333333333333322 23334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 045616 298 LARELSEVKSTLSNALRELEGERR 321 (671)
Q Consensus 298 L~~ELsE~Kss~~~alkelE~ERK 321 (671)
-..+|+++.-++..|...|..=.+
T Consensus 80 a~~~L~~a~P~L~~A~~al~~l~k 103 (344)
T PF12777_consen 80 AEEELAEAEPALEEAQEALKSLDK 103 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCH
Confidence 668888888888888766665444
No 279
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=26.72 E-value=1.1e+03 Score=27.91 Aligned_cols=65 Identities=12% Similarity=0.214 Sum_probs=35.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHhhhch
Q 045616 285 RKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIG---IKDYDQELHALKQKSD 352 (671)
Q Consensus 285 Rk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkg---I~edkaEVe~LKres~ 352 (671)
+.++.+++.++.++..|+..+..++.. +++.-+.....|+.--+++-.. +...+.|...|.|+.+
T Consensus 319 ~~l~~qi~~l~~~i~~e~~~~~~~~~~---~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~ 386 (754)
T TIGR01005 319 VAAKSSLADLDAQIRSELQKITKSLLM---QADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAA 386 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHH
Confidence 346777788888888887766555433 3333333333333333333222 3445666777777743
No 280
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.66 E-value=1e+03 Score=27.44 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 290 RSESLHRKLARELSEVKSTLSNALRELEGE 319 (671)
Q Consensus 290 r~E~ln~KL~~ELsE~Kss~~~alkelE~E 319 (671)
|+-.+.+.|..++.+...++.+.+++|-..
T Consensus 147 R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~ 176 (420)
T COG4942 147 RLAIYYGALNPARAERIDALKATLKQLAAV 176 (420)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 281
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.44 E-value=6.8e+02 Score=30.41 Aligned_cols=57 Identities=30% Similarity=0.299 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc-HHHHHHHhhhch
Q 045616 279 DELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDY-DQELHALKQKSD 352 (671)
Q Consensus 279 ~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~ed-kaEVe~LKres~ 352 (671)
.-||.|.|+ ++.|-++|..|| |--++.+.-+|..|.+|++-.-++ +---+.|+++..
T Consensus 504 K~LE~e~R~---S~~Ls~~L~~El--------------E~~~~~~~~~e~~~evL~~~~~~t~~l~Kq~L~~~~~ 561 (852)
T KOG4787|consen 504 KILELEKRL---SEKLAIDLVSEL--------------EGKIPTIDEIEQCCEVLAAVETQTGRLCKQFLKIDHA 561 (852)
T ss_pred HHHHHHHHH---HHHHHHHHHHHH--------------HhhcCcHhHHHHHHHHHHHHhhhHHHHHHHHHHhccc
Confidence 345555543 444555555555 566788888999999998875554 655666777743
No 282
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.42 E-value=2.4e+02 Score=23.28 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 045616 217 VSLIKALKTELDHARVKIKELLRDQQADRHEMDDL 251 (671)
Q Consensus 217 ~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l 251 (671)
+.-+..++.|+...+.++.+|.++....+.+++.|
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466777777777777777777777666666666
No 283
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=26.17 E-value=2.2e+02 Score=38.29 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=70.1
Q ss_pred hhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh---------------HHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 289 KRSESLHRKLA---RELSEVKSTLSNALRELEGERRS---------------RKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 289 rr~E~ln~KL~---~ELsE~Kss~~~alkelE~ERKa---------------RellE~vCDELAkgI~edkaEVe~LKre 350 (671)
.+.|.+|+|++ ++.+.+|-++..|.+-.-+=+|+ +..||+||+=|--+..+++-+-..||++
T Consensus 2162 ~~ee~vrkrk~svmk~~s~~kPaVLEA~~~V~~ikka~L~EIrs~irpp~~l~i~me~Vc~LLgf~a~~w~~~qQ~LrrD 2241 (3164)
T COG5245 2162 LLEEEVRKRKGSVMKFKSSKKPAVLEAVLFVYKIKKASLREIRSFIRPPGDLCIEMEDVCDLLGFEAKIWFGEQQSLRRD 2241 (3164)
T ss_pred HhHHHHHHHhhhhHhhhhccccHHHHHHHHHHHhhHHHHHHHHHhcCCcccceeeHHHHHHHhcchhHHhhhHHHHhhhh
Confidence 34445555543 56667777777776666666665 3459999987766666666666555543
Q ss_pred c------------------hhhh----------------------------ccCCccchhhHHhhhhhhhhhhhhhHHHh
Q 045616 351 S------------------DKNW----------------------------TGKGEQDHLILHISESWLDERMQMKLEEA 384 (671)
Q Consensus 351 s------------------~k~~----------------------------~ee~eeER~MLqmAEvWREERVQMKL~eA 384 (671)
- .|-+ ....=-=+++|..-+..|+|=-..++. |
T Consensus 2242 Dfi~~i~~y~~e~e~~~~~Rr~~E~~~~Sdp~ft~~~lnRaskacGPl~~Wl~~~cn~skvLE~~~plr~E~kRI~~E-~ 2320 (3164)
T COG5245 2242 DFIRIIGKYPDEIEFDLEARRFREARECSDPSFTGSILNRASKACGPLKRWLVRECNRSKVLEVKIPLREEEKRIDGE-A 2320 (3164)
T ss_pred hHHHHhccCCceeecCHHHHHHHHHHhcCCCcchhHHhhhhhhccCcHHHHHHHHhhHHHhhhhcccchhHHHhhhhH-H
Confidence 1 1111 000001135566667777774443333 1
Q ss_pred hhcccchhhHHHHhhHHHHHHHHhhh
Q 045616 385 QYGLSEKNSIVDKLGFEIEAYLQAKR 410 (671)
Q Consensus 385 k~~leeK~s~vdkL~~elEaFL~~k~ 410 (671)
+--|+....-..|..+|++|+...+
T Consensus 2321 -~~~e~~L~~~~~~s~dl~~~~l~~r 2345 (3164)
T COG5245 2321 -FLVEDRLTLGKGLSSDLMTFKLRRR 2345 (3164)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2235556677788999999987765
No 284
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.09 E-value=8.5e+02 Score=26.25 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045616 266 EQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNA 312 (671)
Q Consensus 266 E~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~a 312 (671)
.+-+|.+-|-+.+.|||. ++..+++|.-|+.+-|.-++..
T Consensus 87 ~q~~ieqeik~~q~elEv-------l~~n~Q~lkeE~dd~keiIs~k 126 (246)
T KOG4657|consen 87 RQMGIEQEIKATQSELEV-------LRRNLQLLKEEKDDSKEIISQK 126 (246)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHH
Confidence 344555555555555543 2233445555555544444443
No 285
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=26.02 E-value=30 Score=40.78 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhc
Q 045616 295 HRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKS 351 (671)
Q Consensus 295 n~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres 351 (671)
+.-++.++++++.-+...-.++++--.++.-++.-|.++-++|.+.+.++++|...+
T Consensus 234 ~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A 290 (713)
T PF05622_consen 234 SQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEA 290 (713)
T ss_dssp ---------------------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677766666666666654434555566667777666666666666666554
No 286
>PRK14144 heat shock protein GrpE; Provisional
Probab=25.85 E-value=4.7e+02 Score=27.13 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045616 294 LHRKLARELSEVKSTLSNALR 314 (671)
Q Consensus 294 ln~KL~~ELsE~Kss~~~alk 314 (671)
...+++++|..+--.|..|+.
T Consensus 93 a~~~~~~~LLpV~DnLerAl~ 113 (199)
T PRK14144 93 GVEKLISALLPVVDSLEQALQ 113 (199)
T ss_pred HHHHHHHHHhhHHhHHHHHHH
Confidence 456788888887777777754
No 287
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=25.80 E-value=1.5e+03 Score=29.09 Aligned_cols=183 Identities=20% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhH-----------HHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHH
Q 045616 221 KALKTELDHARVKIKELLRDQQADRHEMDDLMKQIA-----------EDKLIRKSKEQD--RIHAAVQSVRDELEDERKL 287 (671)
Q Consensus 221 ~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kqla-----------EEK~awKsKE~e--ki~aai~slk~ELe~ERk~ 287 (671)
..|..-|..-..-++.|.++.....++|+.+..... -..+-|+...++ .++.+..-++.+|..=-+.
T Consensus 191 ~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~ 270 (1072)
T KOG0979|consen 191 KSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKE 270 (1072)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhH-
Q 045616 288 RKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLIL- 366 (671)
Q Consensus 288 Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~ML- 366 (671)
-+-.+..-.-|-.|..|+-+-.++.-.++-.--.-..-.=+.-++.-..|.+-+.+.+.+|.+..+-. .+++.-++|+
T Consensus 271 ~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq-~~i~~~~k~i~ 349 (1072)
T KOG0979|consen 271 IKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQ-KRIEKAKKMIL 349 (1072)
T ss_pred hhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_pred ----HhhhhhhhhhhhhhHHHhhhc-ccchhhHHHHhhHHHHH
Q 045616 367 ----HISESWLDERMQMKLEEAQYG-LSEKNSIVDKLGFEIEA 404 (671)
Q Consensus 367 ----qmAEvWREERVQMKL~eAk~~-leeK~s~vdkL~~elEa 404 (671)
.++++=-=|+-|-++.++... ++.|.+.+-..+.++.+
T Consensus 350 ~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~ 392 (1072)
T KOG0979|consen 350 DAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDA 392 (1072)
T ss_pred HHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhH
No 288
>PRK04654 sec-independent translocase; Provisional
Probab=25.75 E-value=3.2e+02 Score=28.82 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 045616 273 AVQSVRDELEDERK 286 (671)
Q Consensus 273 ai~slk~ELe~ERk 286 (671)
.+.++++|+++|=+
T Consensus 42 ~~~~vk~El~~El~ 55 (214)
T PRK04654 42 QWDSVKQELERELE 55 (214)
T ss_pred HHHHHHHHHHHhhh
Confidence 44555555555543
No 289
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=25.34 E-value=24 Score=41.60 Aligned_cols=179 Identities=21% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHH-------HHHHHHHHHHHHHHHHHh----
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRI-------HAAVQSVRDELEDERKLR---- 288 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki-------~aai~slk~ELe~ERk~R---- 288 (671)
+..|+.++..+..+++.|..+....+..++.+.+++ .....+-.+-... ..-|..|..+|....-.-
T Consensus 173 ~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~--~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~k 250 (722)
T PF05557_consen 173 LSELERQAENAESQIQSLESELEELKEQLEELQSEL--QEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEINK 250 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHHH
Q ss_pred ---------hhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhc
Q 045616 289 ---------KRSESLHRKLARELSEVKSTLSNAL---RELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWT 356 (671)
Q Consensus 289 ---------rr~E~ln~KL~~ELsE~Kss~~~al---kelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ 356 (671)
+.+|..|++|..||...+..-.+.- .+...-++.-+.+|.++.+|+ +.+.++..|..+-. .|
T Consensus 251 ~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~----~lq~e~~~Le~el~-sW- 324 (722)
T PF05557_consen 251 ELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELA----ELQLENEKLEDELN-SW- 324 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HH-
Q ss_pred cCCccc-----hhhHHhhhhhhhhhh-----hhhHHHhhhcccchhhHHHHhhHHHHHHH
Q 045616 357 GKGEQD-----HLILHISESWLDERM-----QMKLEEAQYGLSEKNSIVDKLGFEIEAYL 406 (671)
Q Consensus 357 ee~eeE-----R~MLqmAEvWREERV-----QMKL~eAk~~leeK~s~vdkL~~elEaFL 406 (671)
.-+..+ +.--.|+..|...|. ..|+......+.+.-..++.|..++...+
T Consensus 325 ~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~ 384 (722)
T PF05557_consen 325 ESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLL 384 (722)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
No 290
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=25.32 E-value=1.3e+02 Score=28.61 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhHHhhhhh-----hhhhhhhhHHHhhhcccchhhHHHHh
Q 045616 324 KLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESW-----LDERMQMKLEEAQYGLSEKNSIVDKL 398 (671)
Q Consensus 324 ellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvW-----REERVQMKL~eAk~~leeK~s~vdkL 398 (671)
.-|.+.|++|...|.+...=|..+-.-....- +.+|.|+ |--|+-.= -++| +-+.......+.||...|++|
T Consensus 23 ~~Lk~ec~~F~~ki~~F~~iv~~~~~~~~~~A-~~VE~eK-lkAIG~RN~l~s~~k~R-~~~~q~lq~~I~Ek~~eLERl 99 (120)
T PF14931_consen 23 QELKEECKEFVEKISEFQKIVKGFIEILDELA-KRVENEK-LKAIGARNLLKSEAKQR-EAQQQQLQALIAEKKMELERL 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHhHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777776666555544432211 1222222 22222110 1111 123334556688999999999
Q ss_pred hHHHHHHHHh
Q 045616 399 GFEIEAYLQA 408 (671)
Q Consensus 399 ~~elEaFL~~ 408 (671)
+.|.++...-
T Consensus 100 ~~E~~sL~kv 109 (120)
T PF14931_consen 100 RSEYESLQKV 109 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 291
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.25 E-value=9.2e+02 Score=26.37 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 045616 269 RIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRK 324 (671)
Q Consensus 269 ki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRe 324 (671)
.+..-.+.|+.|+... ++..+-++.-=..||..+|..+.....+++.-++.-.
T Consensus 176 ~l~~~~~~L~~e~~~L---~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~ 228 (312)
T smart00787 176 KLRDRKDALEEELRQL---KQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLE 228 (312)
T ss_pred HHHHHHHHHHHHHHHH---HHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555553 3334444433355566666666666666555555433
No 292
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=25.04 E-value=7.4e+02 Score=25.18 Aligned_cols=46 Identities=17% Similarity=0.331 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 045616 269 RIHAAVQSVRDELEDERKLRKRSESLHRKLARELS-EVKSTLSNALRELEGERR 321 (671)
Q Consensus 269 ki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELs-E~Kss~~~alkelE~ERK 321 (671)
-+..++..|..|.+.. -..|..|+..|. ++..-|.++.++++++||
T Consensus 57 sl~~a~~~i~~e~e~~-------a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK 103 (236)
T cd07651 57 GLKNSLDTLRLETESM-------AKSHLKFAKQIRQDLEEKLAAFASSYTQKRK 103 (236)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555432 223444444443 344444455555554443
No 293
>PLN03188 kinesin-12 family protein; Provisional
Probab=24.98 E-value=8.7e+02 Score=31.80 Aligned_cols=82 Identities=18% Similarity=0.336 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-------
Q 045616 271 HAAVQSVRDELEDERKLRKRSESL-------HRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIG------- 336 (671)
Q Consensus 271 ~aai~slk~ELe~ERk~Rrr~E~l-------n~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkg------- 336 (671)
+.-...++-||+-||+.=..+... |.|+..--+|.. -+..+=|++-|+-++=+++|=..-||.
T Consensus 1078 r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~---ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~ 1154 (1320)
T PLN03188 1078 RALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLE---EKHIQLLARHRRIQEGIDDVKKAAARAGVRGAES 1154 (1320)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 335566778888777643222211 223322222222 134444666777777777776666653
Q ss_pred --ccccHHHHHHHhhhchhhh
Q 045616 337 --IKDYDQELHALKQKSDKNW 355 (671)
Q Consensus 337 --I~edkaEVe~LKres~k~~ 355 (671)
|.-.-||+-+||-+-+|.|
T Consensus 1155 ~f~~alaae~s~l~~ereker 1175 (1320)
T PLN03188 1155 KFINALAAEISALKVEREKER 1175 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888877754444
No 294
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.85 E-value=1.3e+03 Score=28.01 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 045616 302 LSEVKSTLSNALRELEGERRSRKLLEELCDEFAIG 336 (671)
Q Consensus 302 LsE~Kss~~~alkelE~ERKaRellE~vCDELAkg 336 (671)
+.+...-+++.-++|.+-+-.++.|+.+..+|-.-
T Consensus 109 I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~ 143 (772)
T KOG0999|consen 109 ILELENELKQLRQELTNVQEENERLEKVHSDLKES 143 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444555555566666666666666666555443
No 295
>PRK11281 hypothetical protein; Provisional
Probab=24.43 E-value=9.2e+02 Score=31.00 Aligned_cols=122 Identities=13% Similarity=0.144 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH------H---
Q 045616 217 VSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERK------L--- 287 (671)
Q Consensus 217 ~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk------~--- 287 (671)
-+..-.|.+|+..-.+++.-+.+|-.++-.-.+-+-.|. .+..++.+....-|+.+++.+..-|. .
T Consensus 191 ~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~-----d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a 265 (1113)
T PRK11281 191 PSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQR-----DYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEA 265 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777776666666665554333222222 12223333333333333333332110 0
Q ss_pred --------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 288 --------------RKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 288 --------------Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
=+..-..|++|+.+|.+.-. .++.-.+....+++.-|.+.+-.+..++.+..|+-.
T Consensus 266 ~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~-------~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s 335 (1113)
T PRK11281 266 QSQDEAARIQANPLVAQELEINLQLSQRLLKATE-------KLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGS 335 (1113)
T ss_pred hhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 01112347777777654333 333334444555555666666666556666555433
No 296
>PF15294 Leu_zip: Leucine zipper
Probab=24.33 E-value=9.6e+02 Score=26.25 Aligned_cols=76 Identities=28% Similarity=0.401 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhc
Q 045616 272 AAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKS 351 (671)
Q Consensus 272 aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres 351 (671)
..|+.|+.|.+ ++|-|+-+++..-+ ...+-|+.+...+++|..+.-.-.-..+++. =+..|.+.+..|..+|-+-
T Consensus 132 kEi~rLq~EN~---kLk~rl~~le~~at-~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~-~~q~l~dLE~k~a~lK~e~ 206 (278)
T PF15294_consen 132 KEIDRLQEENE---KLKERLKSLEKQAT-SALDEKSKLEAQLKELQDEQGDQKGKKDLSF-KAQDLSDLENKMAALKSEL 206 (278)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccccc-cccchhhHHHHHHHHHHHH
Confidence 33444444443 45556666654433 3334466666666666652222111111111 2344666667777666553
Q ss_pred h
Q 045616 352 D 352 (671)
Q Consensus 352 ~ 352 (671)
.
T Consensus 207 e 207 (278)
T PF15294_consen 207 E 207 (278)
T ss_pred H
Confidence 3
No 297
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.03 E-value=7.9e+02 Score=25.14 Aligned_cols=61 Identities=20% Similarity=0.409 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH------HHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDL------MKQIAEDKLIRKSKEQDRIHAAVQSVRDELED 283 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l------~KqlaEEK~awKsKE~eki~aai~slk~ELe~ 283 (671)
|..|+..|-.++..++.+.+.-+-...+|-.+ +++++++|- =-|+++...-|..+..+|++
T Consensus 70 vr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dkn---L~eReeL~~kL~~~~~~l~~ 136 (194)
T PF15619_consen 70 VRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKN---LAEREELQRKLSQLEQKLQE 136 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---chhHHHHHHHHHHHHHHHHH
Confidence 56677777777766666665544333332221 233344332 22345555555555555554
No 298
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=24.02 E-value=1.1e+03 Score=27.02 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=11.0
Q ss_pred HhhhcccchhhHHHHhhHHHHHHHH
Q 045616 383 EAQYGLSEKNSIVDKLGFEIEAYLQ 407 (671)
Q Consensus 383 eAk~~leeK~s~vdkL~~elEaFL~ 407 (671)
|....+......+.+...+++..+.
T Consensus 306 d~e~~~~~~~~~~~~~~~~~~~~~~ 330 (511)
T PF09787_consen 306 DLEAQLEGEQESFREQPQELSQQLE 330 (511)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 299
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=23.76 E-value=6.6e+02 Score=24.13 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHh
Q 045616 228 DHARVKIKELLRDQ 241 (671)
Q Consensus 228 ~~Ar~~I~eL~~E~ 241 (671)
..|+..+.+++.+-
T Consensus 4 ~eA~~ka~~I~~eA 17 (198)
T PF01991_consen 4 EEAQEKAEEIIAEA 17 (198)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666553
No 300
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=23.56 E-value=1.5e+03 Score=28.23 Aligned_cols=162 Identities=21% Similarity=0.172 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 045616 223 LKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLAREL 302 (671)
Q Consensus 223 Lk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~EL 302 (671)
-+.|||..-.+|+.|..--.... -.-..-++-+|.+..-..-+..|-.-|+-.++.|.-|..|.
T Consensus 344 ~q~eLdK~~~~i~~Ln~~leaRe----------------aqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~ 407 (961)
T KOG4673|consen 344 VQLELDKTKKEIKMLNNALEARE----------------AQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEY 407 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHH
Confidence 48899998888888765432111 11122334455565555556666667777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhccccH-HHHHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhhh
Q 045616 303 SEVKSTLSNALRELEGERRS-RKLLEELCDEFAIGIKDYD-QELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMK 380 (671)
Q Consensus 303 sE~Kss~~~alkelE~ERKa-RellE~vCDELAkgI~edk-aEVe~LKres~k~~~ee~eeER~MLqmAEvWREERVQMK 380 (671)
-.-=+.+-+-++-+=+||-+ |.=+-.+-+|||-.|-.|+ +|-.++-+..+ .|+.+--+..||=+-.-+-=|.+-|
T Consensus 408 ~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm---~EGEkLSK~ql~qs~iIkKLRAk~k 484 (961)
T KOG4673|consen 408 HQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLM---AEGEKLSKKQLAQSAIIKKLRAKIK 484 (961)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 66666666666666666654 4445556666666655433 22222222111 1122334556666655555555544
Q ss_pred HHHhhhcccchhhHHHHhhHHHHHH
Q 045616 381 LEEAQYGLSEKNSIVDKLGFEIEAY 405 (671)
Q Consensus 381 L~eAk~~leeK~s~vdkL~~elEaF 405 (671)
-.| .-++.|+..+-+|..|.+..
T Consensus 485 e~e--tl~~K~ge~i~~L~sE~~~l 507 (961)
T KOG4673|consen 485 EAE--TLEEKKGELITKLQSEENKL 507 (961)
T ss_pred hhh--HHHHHhhhHHHHHHHHHHHH
Confidence 333 22233445677777665543
No 301
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=23.53 E-value=7e+02 Score=24.34 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhh
Q 045616 227 LDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRK 263 (671)
Q Consensus 227 L~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awK 263 (671)
|+.=+..|..-+.+=...+.+.+.++......-..++
T Consensus 48 l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~ 84 (174)
T PRK07352 48 LEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQ 84 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433333333
No 302
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=23.40 E-value=1e+03 Score=26.26 Aligned_cols=38 Identities=29% Similarity=0.345 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQI 255 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql 255 (671)
+-|.+|+.++.-=+-.|.+|..+-+.++.+|--+++..
T Consensus 165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~ 202 (294)
T COG1340 165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEA 202 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566666666666665555554443
No 303
>PRK14141 heat shock protein GrpE; Provisional
Probab=23.36 E-value=8.6e+02 Score=25.37 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 045616 223 LKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELE 282 (671)
Q Consensus 223 Lk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe 282 (671)
|..+|+..+.++.+|...-....-+++.+.|+...|+...+..-.+++-..|-.+.+-|+
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLe 95 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLR 95 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Confidence 444555555666666555555566788888888877766666555555555555555444
No 304
>PRK14147 heat shock protein GrpE; Provisional
Probab=23.26 E-value=4.1e+02 Score=26.70 Aligned_cols=36 Identities=19% Similarity=0.500 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Q 045616 293 SLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGI 337 (671)
Q Consensus 293 ~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI 337 (671)
...+++.+|..+++ .+-.++=.+.||+ |+|-|-+.+
T Consensus 50 N~rkR~~kE~e~~~--------~~a~~~~~~~lLp-v~DnlerAl 85 (172)
T PRK14147 50 NQRKRIARDVEQAR--------KFANEKLLGELLP-VFDSLDAGL 85 (172)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHhh-hhhHHHHHH
Confidence 34455666665532 2222333444444 667666654
No 305
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=23.18 E-value=8.7e+02 Score=30.13 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=55.0
Q ss_pred HhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 045616 254 QIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEF 333 (671)
Q Consensus 254 qlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDEL 333 (671)
++-||..++-.++..++-....+++.++-.+..+--..+. ..|.-+|++-|..+.+.-.+.|+=.+.+-++|.==+=+
T Consensus 497 ~llee~~~~~~~~~~~~l~~~~~~k~~~~~q~~~~~~~~~--~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~ 574 (809)
T KOG0247|consen 497 QLLEELEKRILLRTKEILQNNKSLKEKECRQKLMNAQLES--QMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEIL 574 (809)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 3334444555555555555666666666655555444444 67888888888888777666665555555554322222
Q ss_pred HhhccccHHHHHHHhhhc
Q 045616 334 AIGIKDYDQELHALKQKS 351 (671)
Q Consensus 334 AkgI~edkaEVe~LKres 351 (671)
-.. +++.+++.|..+.
T Consensus 575 E~~--~~~~~i~~l~~el 590 (809)
T KOG0247|consen 575 EST--EYEEEIEALDQEL 590 (809)
T ss_pred hcc--hhhhhhHHHHHHH
Confidence 222 6677777777664
No 306
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=23.18 E-value=1.3e+03 Score=27.41 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAE 257 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaE 257 (671)
++|..|+.+|...+.++.+|...=...+-.|-.+-.++++
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~ 327 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLAD 327 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 6788888888888888888877544444444444444433
No 307
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=23.16 E-value=8.9e+02 Score=25.43 Aligned_cols=127 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHH
Q 045616 199 LLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVR 278 (671)
Q Consensus 199 LlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk 278 (671)
|+|-+..+ +++....-..-+..-..-...|.....+..+.....+.+...++.+...+....+.+-.+..+.-++.++
T Consensus 26 l~kPi~~~--l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~ 103 (250)
T PRK14474 26 LYKPIIQV--MKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATAR 103 (250)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH-----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 045616 279 DELE-----DERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEF 333 (671)
Q Consensus 279 ~ELe-----~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDEL 333 (671)
.+-. ...+..+.+..--..|+-++++ +.++++=.+..-+.+++..|++|
T Consensus 104 ~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~------kiL~~~~d~~~~~~lid~~i~~l 157 (250)
T PRK14474 104 DEWLEQLEREKQEFFKALQQQTGQQMVKIIR------AALADLANATLEQQIVGIFIARL 157 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhcCHHHHHHHHHHHHHHh
No 308
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.06 E-value=1.5e+03 Score=28.59 Aligned_cols=47 Identities=28% Similarity=0.321 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhh
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKS 264 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKs 264 (671)
+.+.-++.-|+.|+++++.|+.-.+..-++---+|+++.---+.|+.
T Consensus 691 ~~~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k 737 (1104)
T COG4913 691 SDIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRK 737 (1104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666677788899999999888887777777888877655555654
No 309
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.98 E-value=1.1e+03 Score=26.28 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQ 275 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~ 275 (671)
|.-|++-|-.+..++++= .-||+.|..||+-=+.-|=--|..+|.|-+.
T Consensus 70 iRHLkakLkes~~~l~dR-------etEI~eLksQL~RMrEDWIEEECHRVEAQLA 118 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDR-------ETEIDELKSQLARMREDWIEEECHRVEAQLA 118 (305)
T ss_pred HHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788787777777762 3479999999998888898888888776553
No 310
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.97 E-value=8.5e+02 Score=25.12 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 045616 228 DHARVKIKELLRDQQADRHEMDDLMKQI 255 (671)
Q Consensus 228 ~~Ar~~I~eL~~E~~s~~~eie~l~Kql 255 (671)
.+++.+|.++..|++....+++.|.+++
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~ 65 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREI 65 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666655555555555554
No 311
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=22.96 E-value=1.5e+03 Score=27.97 Aligned_cols=34 Identities=29% Similarity=0.291 Sum_probs=24.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 281 LEDERKLRKRSESLHRKLARELSEVKSTLSNALR 314 (671)
Q Consensus 281 Le~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alk 314 (671)
|.+|=-.|.-+|.----|-.|+++.|.-+...-|
T Consensus 162 LQqellsrtsLETqKlDLmaevSeLKLkltalEk 195 (861)
T KOG1899|consen 162 LQQELLSRTSLETQKLDLMAEVSELKLKLTALEK 195 (861)
T ss_pred HHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 4444456777888777788999998876665543
No 312
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.86 E-value=5.7e+02 Score=23.10 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHH
Q 045616 297 KLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELH 345 (671)
Q Consensus 297 KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe 345 (671)
.|..|+..+..=-++.-++|.+=...-.-||.+|.|+.+.+..--..|+
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR 84 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443333333333444444444457789999999888765444444
No 313
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=22.72 E-value=9.3e+02 Score=25.51 Aligned_cols=15 Identities=20% Similarity=0.689 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHH
Q 045616 272 AAVQSVRDELEDERK 286 (671)
Q Consensus 272 aai~slk~ELe~ERk 286 (671)
.-+..|...|+.||+
T Consensus 243 e~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 243 EHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556666666665
No 314
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=22.67 E-value=6.4e+02 Score=23.60 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=14.3
Q ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 045616 247 EMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELE 282 (671)
Q Consensus 247 eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe 282 (671)
+++.+.++|..++..+-..+..+....++....+|.
T Consensus 58 el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~ 93 (158)
T PF03938_consen 58 ELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQ 93 (158)
T ss_dssp HHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 315
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.66 E-value=5.8e+02 Score=23.13 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHH
Q 045616 297 KLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHAL 347 (671)
Q Consensus 297 KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~L 347 (671)
++-+=|.+...-...|++..+.|++.+.-.+.--..|...|...++++..+
T Consensus 50 ~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 50 KFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666677777888888888877666655555555555544444433
No 316
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=22.61 E-value=1.4e+03 Score=27.49 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045616 198 ELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQ 241 (671)
Q Consensus 198 ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~ 241 (671)
+=||--+.+|. +...-...-|..|+.|.++.-.+|.+|+..-
T Consensus 18 ~~lk~e~a~~q--qr~~qmseev~~L~eEk~~~~~~V~eLE~sL 59 (617)
T PF15070_consen 18 QQLKEESAQWQ--QRMQQMSEEVRTLKEEKEHDISRVQELERSL 59 (617)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555662 2222222557888888888888888888764
No 317
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=22.49 E-value=4.9e+02 Score=22.19 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 045616 221 KALKTELDHARVKIKELLRDQQADRHEMD 249 (671)
Q Consensus 221 ~aLk~EL~~Ar~~I~eL~~E~~s~~~eie 249 (671)
.....++..+..++..|..+...+...+.
T Consensus 8 ~~~~~~~~~~~~~l~~L~~~~~~~~~~~~ 36 (123)
T PF02050_consen 8 AEAQQELQEAEEQLEQLQQERQEYQEQLS 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666655544333
No 318
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=22.48 E-value=8.7e+02 Score=25.06 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh------hHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCcc
Q 045616 289 KRSESLHRKLARELSEVKSTLSNALRE-LEGERR------SRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQ 361 (671)
Q Consensus 289 rr~E~ln~KL~~ELsE~Kss~~~alke-lE~ERK------aRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~ee 361 (671)
.|+..+..||..=+.+..++=.+.|++ .|+|.+ .+..++.+. --+.-||++.+.+|++-.+-..+++-.
T Consensus 37 ~H~~e~~~kl~el~~e~Q~~QlK~LKe~~EkE~KElkK~L~~kr~e~I~----~k~~~dK~e~er~KrEin~s~I~e~V~ 112 (185)
T PF08703_consen 37 EHLKEQFQKLEELARECQAAQLKKLKETCEKETKELKKKLDRKRLESIK----EKKTKDKDEQERLKREINRSHIQEVVQ 112 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTT---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH----HhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444444444445544 344432 333344444 345556777777777754333222222
Q ss_pred ch----------------hhHHhhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHhhh
Q 045616 362 DH----------------LILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKR 410 (671)
Q Consensus 362 ER----------------~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k~ 410 (671)
++ ..-.+-+...|+|-||+- ++...+ -+.+..|-.||-.||...-
T Consensus 113 ~ikrL~~~qekrqekL~~kh~e~lq~i~ee~~k~q~-~l~~ey---e~k~~~L~~Ei~~~v~~~~ 173 (185)
T PF08703_consen 113 EIKRLEEKQEKRQEKLEEKHEEVLQQIEEEEKKLQA-ELEQEY---EEKMKRLPQEIRESVQECM 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHhhhHHHHHHHHHHH
Confidence 22 222333445566655543 222222 2556777788888888753
No 319
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=22.44 E-value=7e+02 Score=28.59 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHH
Q 045616 218 SLIKALKTELDHARV-----KIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAV 274 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~-----~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai 274 (671)
-+|-.|+...-+=+. ++..+..+-....+++..|--.+..+|-.||.--..-+..++
T Consensus 227 D~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~ 288 (424)
T PF03915_consen 227 DLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVC 288 (424)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 346667666655444 345566777777788888888888999999875544444443
No 320
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.40 E-value=5.2e+02 Score=27.77 Aligned_cols=96 Identities=19% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 045616 204 NRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELED 283 (671)
Q Consensus 204 nrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ 283 (671)
|.+-.++++....+.++..|+.+|..+++++.+|.. ...-.+=+--.+++-++.++..|..
T Consensus 200 ~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~-------------------~~~~~~P~v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 200 NKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRS-------------------ITPEQNPQVPSLQARIKSLRKQIDE 260 (362)
T ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------hCCCCCCchHHHHHHHHHHHHHHHH
Q ss_pred HHHHh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 284 ERKLR--------KRSESLHRKLARELSEVKSTLSNALRELEG 318 (671)
Q Consensus 284 ERk~R--------rr~E~ln~KL~~ELsE~Kss~~~alkelE~ 318 (671)
|++.- -....-...|.+|+.-++..+..++..++.
T Consensus 261 e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~ 303 (362)
T TIGR01010 261 QRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQ 303 (362)
T ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 321
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=22.30 E-value=6.4e+02 Score=24.83 Aligned_cols=124 Identities=18% Similarity=0.244 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHH-----hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHH
Q 045616 226 ELDHARVKIKELLRDQQADRHEMDDLMKQ-----IAEDKLIRKSKEQDRIHAAVQSVRDELEDERK-LRKRSESLHRKLA 299 (671)
Q Consensus 226 EL~~Ar~~I~eL~~E~~s~~~eie~l~Kq-----laEEK~awKsKE~eki~aai~slk~ELe~ERk-~Rrr~E~ln~KL~ 299 (671)
++.....+|++|+.+--.-+++|...+-+ +.-|=..-=....|.|-..++++...|.--+- .-..+...=..|+
T Consensus 41 ~~~~~~~~i~~lE~~aD~i~~~i~~~L~~~fitP~dRedi~~L~~~lD~I~d~i~~~a~~l~~~~~~~~~~~~~~~~~l~ 120 (214)
T PF01865_consen 41 DVEELLEEIKELEHEADEIKREIREELYKSFITPFDREDILRLISSLDDIADYIEDAAKRLSLYKVEIPEELREEFQELA 120 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHH
Confidence 34445556666666655555555444333 22233344456788999999998888876541 0122222334455
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhh
Q 045616 300 RELSEVKSTLSNALRELEG--ERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNW 355 (671)
Q Consensus 300 ~ELsE~Kss~~~alkelE~--ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~ 355 (671)
..+.++=..+..++..|.. +..-+.. +.+++|..++.++..+.++..+..
T Consensus 121 ~~~~~~~~~l~~~i~~l~~~~~~~~~~~------~~~~~I~~~E~~~D~l~~~~~~~l 172 (214)
T PF01865_consen 121 EIVVEAIEELVEAIEELKSILESSFEEK------ELIKEINKLEEEADKLYRRLIKKL 172 (214)
T ss_dssp HHHHHHHHHHHHHHCCCCCCCCS-HCCH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556655554 2222211 677788999999999998875443
No 322
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=22.25 E-value=4.8e+02 Score=31.07 Aligned_cols=61 Identities=25% Similarity=0.332 Sum_probs=32.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 285 RKLRKRSESLHRKLARELSEV----KSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 285 Rk~Rrr~E~ln~KL~~ELsE~----Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
++||+..|.++.+.-+||.+. +-.+...-+.||.+.+. .+-++|..|+ .+.+.+|.+-|++
T Consensus 463 ~kL~~E~e~~q~~~~~~l~~~~~~~~~em~~~r~tlE~k~~~--n~~e~~kkl~---~~~qr~l~etKkK 527 (588)
T KOG3612|consen 463 EKLRQEFEELQQTSRRELPVPLRNFELEMAEMRKTLEQKHAE--NIKEEIKKLA---EEHQRALAETKKK 527 (588)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHH--HHHHHHHHHH---HHHHHHHHHHHHH
Confidence 366667777777777777544 34444445556555442 2223343333 2345555555554
No 323
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=22.08 E-value=9.2e+02 Score=25.24 Aligned_cols=135 Identities=28% Similarity=0.340 Sum_probs=68.9
Q ss_pred ccccccccchHHHHHHHHHhhccccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhh
Q 045616 187 GESRYNLKTSTELLKVLNRIWSLEEQ-HASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSK 265 (671)
Q Consensus 187 ~e~~~~L~TS~ELlkVLnrIW~leeq-~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsK 265 (671)
.+...+..+|++|--+|-+|...--. +..--...++|..|| |..|++.-....+.|..+-|...-|
T Consensus 54 a~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~l------i~pLe~k~e~d~k~i~~~~K~y~~E------- 120 (223)
T cd07605 54 GELASQSRGSQELGEALKQIVDTHKSIEASLEQVAKAFHGEL------ILPLEKKLELDQKVINKFEKDYKKE------- 120 (223)
T ss_pred HHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHHHHHH-------
Confidence 33333344678888888887421111 111112344444444 4456666556666666666666544
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 045616 266 EQDRIHAAVQSVRDELE-------------DERKLRKRSESLHRKLARELSE-VKSTLSNALRELEGERRSRKLLEELCD 331 (671)
Q Consensus 266 E~eki~aai~slk~ELe-------------~ERk~Rrr~E~ln~KL~~ELsE-~Kss~~~alkelE~ERKaRellE~vCD 331 (671)
+...++.|+-...||. .+-+++..+|.+|.|-. ||.+ .+.++..|| +|..|+=.-+++..|-
T Consensus 121 -~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~-ele~~~~~~lr~al--~EERrRyc~lv~~~c~ 196 (223)
T cd07605 121 -YKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQK-ELEAFVSQGLRDAL--LEERRRYCFLVDKHCS 196 (223)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 2222223332233322 23344445777777653 2222 234444443 3556677789999997
Q ss_pred HHHhhcc
Q 045616 332 EFAIGIK 338 (671)
Q Consensus 332 ELAkgI~ 338 (671)
=+=.++.
T Consensus 197 v~~~e~~ 203 (223)
T cd07605 197 VAKHEIA 203 (223)
T ss_pred HHHHHHH
Confidence 6555444
No 324
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.99 E-value=1.5e+03 Score=27.65 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=12.2
Q ss_pred EEEEEeccCCCcccccccccc
Q 045616 32 SILIVGLCHPPEAHDSIIKEN 52 (671)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~ 52 (671)
.||||+-+.|.--|-=++..+
T Consensus 298 ~~~via~~~G~l~h~i~l~~~ 318 (717)
T PF10168_consen 298 PVLVIATSNGKLYHCILLEAE 318 (717)
T ss_pred CEEEEEecCCeEEEEEEeccc
Confidence 466666666665555554433
No 325
>PRK01919 tatB sec-independent translocase; Provisional
Probab=21.88 E-value=4e+02 Score=27.23 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045616 269 RIHAAVQSVRDELEDER 285 (671)
Q Consensus 269 ki~aai~slk~ELe~ER 285 (671)
+++.++.++++|+++|=
T Consensus 38 k~Rr~~~d~K~ev~~E~ 54 (169)
T PRK01919 38 RAQRYINDVKAEVSREI 54 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556667777777663
No 326
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.83 E-value=1.3e+03 Score=26.97 Aligned_cols=126 Identities=19% Similarity=0.287 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhh----------HHHHHHHHHHHHHHHHH----H
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSK----------EQDRIHAAVQSVRDELE----D 283 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsK----------E~eki~aai~slk~ELe----~ 283 (671)
-|+-.|..++-+|+.+|++-+++--..+.-|.+-.++|.++.-.-..+ |-.-..++|..++.=+- +
T Consensus 345 ~ll~tlq~~iSqaq~~vq~qma~lv~a~e~i~~e~~rl~q~nd~l~~~~~l~t~~Qq~e~~~lp~ave~l~ql~~~~r~~ 424 (542)
T KOG0993|consen 345 DLLVTLQAEISQAQSEVQKQMARLVVASETIADEDSRLRQINDLLTTVGELETQVQQAEVQNLPAAVEQLAQLYKQRRTS 424 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhHhhhhcchhhHHHHHHHHHHHHHH
Confidence 356788899999999998888877666666666666666655443332 22223333333322211 1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHhhccccHHHHHHHhhh
Q 045616 284 ERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEE-------LCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 284 ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~-------vCDELAkgI~edkaEVe~LKre 350 (671)
=+.-+.-+|-.-.+|.+|+--.+ ..||+|+-++.-||. -|.++---|...|.|.+.+++.
T Consensus 425 ~~~~l~a~ehv~e~l~~ei~~L~-------eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~qq 491 (542)
T KOG0993|consen 425 LQQELDASEHVQEDLVKEIQSLQ-------EQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLHQQ 491 (542)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 12223345666677777764322 347888888887774 4666666777778888877754
No 327
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.81 E-value=2.1e+02 Score=27.37 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=28.0
Q ss_pred ccccccccccchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045616 185 RVGESRYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQ 241 (671)
Q Consensus 185 R~~e~~~~L~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~ 241 (671)
++++.+.+|+..++++...... + .....+..+++.-..+|.+|++..
T Consensus 51 ~lr~~G~sL~eI~~~l~~~~~~----~------~~~~~~~~~~~~l~~~i~~Le~~l 97 (134)
T cd04779 51 HLKGQRLSLAEIKDQLEEVQRS----D------KEQREVAQEVQLVCDQIDGLEHRL 97 (134)
T ss_pred HHHHCCCCHHHHHHHHHhhccc----c------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888877554331 0 112345555666666666665544
No 328
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=21.81 E-value=9.2e+02 Score=25.11 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 045616 220 IKALKTELDHARVKIKELLRDQQAD 244 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~ 244 (671)
|.....||++...+|++|++..+..
T Consensus 4 l~~~E~ele~l~~~ikkLiK~ck~~ 28 (207)
T cd07602 4 LHEHEAELERTNKAIKELIKECKNL 28 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888877443
No 329
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=21.62 E-value=6.5e+02 Score=23.27 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 045616 297 KLARELSEVK 306 (671)
Q Consensus 297 KL~~ELsE~K 306 (671)
++...|.+++
T Consensus 130 ~i~~~l~~~~ 139 (202)
T PF01442_consen 130 KIEERLEELS 139 (202)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 330
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.59 E-value=8.5e+02 Score=24.62 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=4.9
Q ss_pred HHHHHHHhHHHH
Q 045616 248 MDDLMKQIAEDK 259 (671)
Q Consensus 248 ie~l~KqlaEEK 259 (671)
+..|-..+.+.+
T Consensus 85 i~~l~~~i~~~~ 96 (188)
T PF03962_consen 85 IEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHH
Confidence 333434444443
No 331
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=21.59 E-value=1.3e+03 Score=26.92 Aligned_cols=92 Identities=12% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKE-----QDRIHAAVQSVRDELEDERKLRKRSESL 294 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE-----~eki~aai~slk~ELe~ERk~Rrr~E~l 294 (671)
+..|++.|+..|....+-++.-...+.++..=++.||.+-+.-|++. ++.|.+.|.-+++.|+ +.+++++.+
T Consensus 83 ~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~---~f~~~v~~~ 159 (475)
T PRK10361 83 LREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLD---GFRRQVQDS 159 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045616 295 HRKLARELSEVKSTLSNALR 314 (671)
Q Consensus 295 n~KL~~ELsE~Kss~~~alk 314 (671)
+..=+++-...+.-+.+..+
T Consensus 160 ~~~~~~~~~~L~~qi~~L~~ 179 (475)
T PRK10361 160 FGKEAQERHTLAHEIRNLQQ 179 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 332
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=21.15 E-value=4.2e+02 Score=30.44 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=29.7
Q ss_pred cccCcccHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhhHHHHHHHHhHHH
Q 045616 210 EEQHASNVSLIKALKTELDHARVKIKELLRDQ-------QADRHEMDDLMKQIAED 258 (671)
Q Consensus 210 eeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~-------~s~~~eie~l~KqlaEE 258 (671)
+-+-.+.+.+|..|+.||-.++++...|..-- ..-+.+|..|-+|+++|
T Consensus 278 ~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~e 333 (434)
T PRK15178 278 KETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQ 333 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 33345666788888888888888887776531 22334455555555444
No 333
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.12 E-value=1e+03 Score=25.41 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 275 QSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELE 317 (671)
Q Consensus 275 ~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE 317 (671)
..+..+|+.|||.- -.-.+||-++|.-.-..+.++-+.|+
T Consensus 98 ~~~~~~l~~~rk~~---~~~~~klqk~l~~~~~~leksKk~Y~ 137 (252)
T cd07675 98 MRYSHDLKGERKMH---LQEGRKAQQYLDMCWKQMDNSKKKFE 137 (252)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666655432 34455555555444444444444444
No 334
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.10 E-value=7.8e+02 Score=24.01 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=65.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcc
Q 045616 259 KLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIK 338 (671)
Q Consensus 259 K~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~ 338 (671)
|..-|++|-.+++..+-..-.-|..-|.-..-+..-+..|..+|.+.+..+.++-.++-..+..|.-+...-.+|...-|
T Consensus 57 kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 57 KIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33335778888888887777788888888888888899999999999999999999998888888888888888876544
Q ss_pred c
Q 045616 339 D 339 (671)
Q Consensus 339 e 339 (671)
.
T Consensus 137 ~ 137 (177)
T PF13870_consen 137 L 137 (177)
T ss_pred C
Confidence 4
No 335
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=21.05 E-value=8.1e+02 Score=24.16 Aligned_cols=8 Identities=0% Similarity=-0.047 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 045616 323 RKLLEELC 330 (671)
Q Consensus 323 RellE~vC 330 (671)
+.++++.+
T Consensus 166 ~~lid~~i 173 (184)
T CHL00019 166 LRTINANI 173 (184)
T ss_pred HHHHHHHH
Confidence 33333333
No 336
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=21.00 E-value=1.5e+03 Score=28.93 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHH
Q 045616 194 KTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAA 273 (671)
Q Consensus 194 ~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aa 273 (671)
+|..++|.-|.|+|---++ +-.++..=|--.+....+. +-+-++--+++++++.-+.-..+--|.|..+
T Consensus 713 ~~~~~vl~~Lara~y~~~~------~~eak~~ll~a~~~~p~~~-----~v~FN~a~v~kkla~s~lr~~k~t~eev~~a 781 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGK------LQEAKEALLKARHLAPSNT-----SVKFNLALVLKKLAESILRLEKRTLEEVLEA 781 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHhCCccc-----hHHhHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 4678899999999832222 2222222111111111111 1233455666777766554444444555555
Q ss_pred HHHH
Q 045616 274 VQSV 277 (671)
Q Consensus 274 i~sl 277 (671)
++.+
T Consensus 782 ~~~l 785 (1018)
T KOG2002|consen 782 VKEL 785 (1018)
T ss_pred HHHH
Confidence 5443
No 337
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=20.87 E-value=9.1e+02 Score=24.71 Aligned_cols=97 Identities=15% Similarity=0.230 Sum_probs=60.5
Q ss_pred CCCCCCcCCcCCcccccccCCCCccCCCcccccccccccccccccchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHH
Q 045616 150 ALQPLSPASYGSSMEMAPYNPAAAVTPTSSLDFKGRVGESRYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDH 229 (671)
Q Consensus 150 alqp~Spas~~ssme~~~~~~~~~~tpt~Sl~~k~R~~e~~~~L~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~ 229 (671)
.+.||++.+|.+.|=.... +.-=|+-||+++. ++-+..=|+.
T Consensus 43 ~~p~~~~~~~~~~l~w~~I--------------------------~FliL~~lL~k~~------------~~pI~~vLe~ 84 (204)
T PRK09174 43 VFPPFDSTHYASQLLWLAI--------------------------TFGLFYLFMSRVI------------LPRIGGIIET 84 (204)
T ss_pred CCCCCcchhccHHHHHHHH--------------------------HHHHHHHHHHHHH------------HHHHHHHHHH
Confidence 4888998888664432221 3335666777752 2333334777
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 045616 230 ARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDE 284 (671)
Q Consensus 230 Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~E 284 (671)
=+..|..-+.+-...+.+.+.++.+..+.-..=|.+-++.+..+....+.+.+.+
T Consensus 85 R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~ 139 (204)
T PRK09174 85 RRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAE 139 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888888866665555555555555544444444333
No 338
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=20.80 E-value=4.2e+02 Score=28.73 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=6.3
Q ss_pred HHHHHhhhhhhHHHHHH
Q 045616 236 ELLRDQQADRHEMDDLM 252 (671)
Q Consensus 236 eL~~E~~s~~~eie~l~ 252 (671)
||.+.+...+.++..|+
T Consensus 3 el~~~~~~~~~~~r~l~ 19 (378)
T TIGR01554 3 ELKEQREEIVAEIRSLL 19 (378)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 339
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=20.74 E-value=5.3e+02 Score=25.73 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=22.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 045616 261 IRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRK 297 (671)
Q Consensus 261 awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 297 (671)
..+.+++..++..|.++..+|..=++.+-.+-..|+|
T Consensus 50 ~~~~r~~~~~~~~v~~~~~~i~~k~~El~~L~~~d~~ 86 (146)
T PF05852_consen 50 HNSLREECEIKNKVSSLETEISEKKKELSHLKKFDRK 86 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3445666677777777777776666555555555544
No 340
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=20.59 E-value=5.7e+02 Score=22.22 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 045616 265 KEQDRIHAAVQSVRDELEDER 285 (671)
Q Consensus 265 KE~eki~aai~slk~ELe~ER 285 (671)
..+..|.+.++.+..-|+.++
T Consensus 39 ~~~~~I~~~f~~l~~~L~~~e 59 (127)
T smart00502 39 DVEAQIKAAFDELRNALNKRK 59 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665443
No 341
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=20.51 E-value=1.5e+03 Score=28.96 Aligned_cols=86 Identities=20% Similarity=0.317 Sum_probs=43.2
Q ss_pred HHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 237 LLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALREL 316 (671)
Q Consensus 237 L~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkel 316 (671)
+.+=+.+..++-..|++++..-+ ++.|+. -..+++.-+.||+.|.=..+--.+.+.|..-.+..+++-...|
T Consensus 1080 ~k~LK~~~e~e~kElk~~l~kkr-------~e~ik~-~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L 1151 (1189)
T KOG1265|consen 1080 TKALKESLEKETKELKKKLDKKR-------MEDIKV-DKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQL 1151 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHhhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555666654332 455553 3356677777777775444444444444444444444444444
Q ss_pred HHHHhhHHHHHHHHHH
Q 045616 317 EGERRSRKLLEELCDE 332 (671)
Q Consensus 317 E~ERKaRellE~vCDE 332 (671)
. ++--+.+|.+.++
T Consensus 1152 ~--k~~~~~leql~e~ 1165 (1189)
T KOG1265|consen 1152 V--KKHLEVLEQLAEE 1165 (1189)
T ss_pred H--HHHHHHHHHHHHh
Confidence 3 3344455555444
No 342
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.39 E-value=7.9e+02 Score=23.79 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHH
Q 045616 216 NVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKL 260 (671)
Q Consensus 216 ~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~ 260 (671)
+..-+..|..|+..-+.++.+|..+....+.++..|.+.++.+-+
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el 114 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEEL 114 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 345588999999999999999999999999999999999887754
No 343
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.31 E-value=6.8e+02 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHh
Q 045616 232 VKIKELLRDQQADRHEMDDLMKQI 255 (671)
Q Consensus 232 ~~I~eL~~E~~s~~~eie~l~Kql 255 (671)
.++.-++.+-...+.+++.+.+|.
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~ 141 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQA 141 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555554
No 344
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=20.19 E-value=9.6e+02 Score=25.36 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=48.5
Q ss_pred HHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 239 RDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEG 318 (671)
Q Consensus 239 ~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ 318 (671)
+......++|..-|.++-.=.+-|+.+..++-.. ..-+.+|+.| .+|-+-+.+|-.+.=--.-|...|+++|+
T Consensus 117 ~k~~~Rek~Ia~nM~Kmpk~i~e~~~~~~kk~~~------~~~~k~rker-l~eEvre~fGy~vDprdprF~eml~~kEk 189 (217)
T PF10147_consen 117 EKRLAREKEIAKNMAKMPKWIAEWKAKIAKKEAK------AQAAKERKER-LIEEVREHFGYKVDPRDPRFQEMLQEKEK 189 (217)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHH-HHHHHHHHhCCcCCCCChHHHHHHHHHHH
Confidence 3333445678888888888888888777666221 1223333333 34777777777776666677788888887
Q ss_pred HHh
Q 045616 319 ERR 321 (671)
Q Consensus 319 ERK 321 (671)
|.|
T Consensus 190 eeK 192 (217)
T PF10147_consen 190 EEK 192 (217)
T ss_pred HHH
Confidence 765
No 345
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=20.10 E-value=7.9e+02 Score=23.71 Aligned_cols=11 Identities=27% Similarity=0.598 Sum_probs=6.4
Q ss_pred ccchhhHHhhh
Q 045616 360 EQDHLILHISE 370 (671)
Q Consensus 360 eeER~MLqmAE 370 (671)
+.|=+|+-|++
T Consensus 85 EldDLL~ll~D 95 (136)
T PF04871_consen 85 ELDDLLVLLGD 95 (136)
T ss_pred hHHHHHHHHHh
Confidence 45556666665
Done!