Query 045616
Match_columns 671
No_of_seqs 104 out of 116
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 06:07:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ocy_A RAB guanine nucleotide 97.3 0.0072 2.5E-07 57.6 15.6 130 196-348 5-135 (154)
2 2eqb_B RAB guanine nucleotide 96.0 0.076 2.6E-06 47.3 11.7 91 223-339 3-94 (97)
3 3oja_B Anopheles plasmodium-re 95.8 0.11 3.7E-06 55.7 14.0 122 222-351 453-574 (597)
4 2e7s_A RAB guanine nucleotide 93.0 0.44 1.5E-05 44.7 9.2 106 221-342 11-117 (135)
5 1i84_S Smooth muscle myosin he 92.2 0.4 1.4E-05 56.9 10.0 21 220-240 859-879 (1184)
6 1i84_S Smooth muscle myosin he 92.1 0.87 3E-05 54.1 12.6 46 273-318 893-938 (1184)
7 1c1g_A Tropomyosin; contractIl 92.0 7.1 0.00024 35.7 21.5 15 223-237 11-25 (284)
8 3u59_A Tropomyosin beta chain; 90.8 3.4 0.00012 36.1 12.0 75 220-298 11-95 (101)
9 2hg7_A Phage-like element PBSX 89.6 0.064 2.2E-06 48.1 0.0 39 273-311 64-102 (110)
10 3u1c_A Tropomyosin alpha-1 cha 89.2 5.4 0.00018 35.0 12.0 74 220-298 11-95 (101)
11 2dfs_A Myosin-5A; myosin-V, in 88.6 2.1 7.1E-05 50.9 11.6 21 269-289 957-977 (1080)
12 1c1g_A Tropomyosin; contractIl 87.7 16 0.00056 33.3 21.5 8 397-404 269-276 (284)
13 2dfs_A Myosin-5A; myosin-V, in 86.7 8.2 0.00028 46.0 15.1 13 361-373 1042-1054(1080)
14 3oja_A Leucine-rich immune mol 86.5 8.6 0.0003 40.4 13.7 67 284-350 412-478 (487)
15 3oja_B Anopheles plasmodium-re 83.4 18 0.0006 38.7 14.5 85 268-352 473-568 (597)
16 3ol1_A Vimentin; structural ge 81.5 30 0.001 31.1 14.3 100 221-349 16-115 (119)
17 2v71_A Nuclear distribution pr 80.5 35 0.0012 33.5 14.1 40 213-252 37-76 (189)
18 2eqb_B RAB guanine nucleotide 80.4 32 0.0011 30.7 12.8 79 220-305 7-95 (97)
19 2ocy_A RAB guanine nucleotide 80.3 26 0.0009 33.4 12.8 81 226-306 38-128 (154)
20 2i1j_A Moesin; FERM, coiled-co 80.1 2.4 8.1E-05 47.1 6.5 104 237-352 291-401 (575)
21 2w6b_A RHO guanine nucleotide 78.0 5.4 0.00019 32.5 6.3 36 299-334 16-51 (56)
22 3na7_A HP0958; flagellar bioge 76.3 63 0.0021 31.9 17.6 123 220-352 41-167 (256)
23 3vkg_A Dynein heavy chain, cyt 74.9 66 0.0022 42.9 18.1 33 227-259 1929-1968(3245)
24 3iyk_A VP5; icosahedral virus; 74.5 14 0.00047 41.1 10.3 16 229-244 94-109 (526)
25 3swk_A Vimentin; cytoskeleton, 71.3 22 0.00076 30.5 8.9 56 295-350 16-78 (86)
26 3oja_A Leucine-rich immune mol 68.3 48 0.0017 34.8 12.6 23 326-348 433-455 (487)
27 2p22_C Protein SRN2; endosome, 66.1 97 0.0033 30.2 13.2 25 326-350 140-166 (192)
28 2v4h_A NF-kappa-B essential mo 65.4 43 0.0015 30.6 9.8 34 310-350 72-105 (110)
29 3vkg_A Dynein heavy chain, cyt 65.3 87 0.003 41.8 16.2 101 251-355 1903-2003(3245)
30 1cii_A Colicin IA; bacteriocin 64.8 48 0.0016 36.9 11.8 54 227-280 358-413 (602)
31 3na7_A HP0958; flagellar bioge 64.7 1.1E+02 0.0038 30.1 17.6 34 314-347 97-130 (256)
32 3o0z_A RHO-associated protein 64.5 1.1E+02 0.0036 29.7 14.8 48 265-312 62-116 (168)
33 3tnu_B Keratin, type II cytosk 62.4 88 0.003 28.1 12.0 61 220-281 31-91 (129)
34 3i00_A HIP-I, huntingtin-inter 62.2 47 0.0016 30.3 9.6 66 218-305 15-80 (120)
35 2e7s_A RAB guanine nucleotide 61.8 40 0.0014 31.6 9.2 89 218-306 18-116 (135)
36 3l4f_A RHO guanine nucleotide 61.8 18 0.00061 30.0 6.1 41 298-338 12-52 (61)
37 2fxo_A Myosin heavy chain, car 60.9 95 0.0033 28.0 14.2 63 277-339 53-122 (129)
38 2fxo_A Myosin heavy chain, car 59.0 1E+02 0.0035 27.7 16.3 31 274-304 22-52 (129)
39 2w6b_A RHO guanine nucleotide 58.3 20 0.00068 29.3 5.6 24 277-300 29-52 (56)
40 2b5u_A Colicin E3; high resolu 57.0 1.4E+02 0.0049 33.4 13.8 69 267-345 344-426 (551)
41 3tnu_A Keratin, type I cytoske 53.5 1.1E+02 0.0039 27.5 10.6 62 219-281 32-93 (131)
42 3ok8_A Brain-specific angiogen 52.6 1.9E+02 0.0066 28.9 15.3 134 186-342 60-205 (222)
43 2v0o_A FCHO2, FCH domain only 52.4 1.6E+02 0.0056 28.1 13.9 22 296-317 125-146 (276)
44 3cl3_D NF-kappa-B essential mo 51.1 44 0.0015 31.2 7.5 92 220-318 4-101 (130)
45 1f5n_A Interferon-induced guan 49.7 3.2E+02 0.011 30.6 19.0 94 312-408 485-582 (592)
46 3ol1_A Vimentin; structural ge 48.5 1.5E+02 0.0051 26.5 15.0 84 218-306 20-103 (119)
47 3u06_A Protein claret segregat 46.9 34 0.0012 36.6 7.1 32 221-252 6-37 (412)
48 4ani_A Protein GRPE; chaperone 44.6 2.3E+02 0.008 28.1 12.1 64 219-282 60-123 (213)
49 3mq7_A Bone marrow stromal ant 44.1 2E+02 0.0068 26.6 11.1 40 221-260 28-67 (121)
50 2b5u_A Colicin E3; high resolu 43.4 4E+02 0.014 30.0 16.4 71 334-409 362-432 (551)
51 1m1j_B Fibrinogen beta chain; 42.1 1.4E+02 0.0047 32.9 10.8 56 197-255 103-158 (464)
52 1k1f_A Breakpoint cluster regi 41.3 37 0.0013 28.8 4.9 53 209-261 15-69 (72)
53 1ic2_A Tropomyosin alpha chain 40.6 1.6E+02 0.0054 24.5 9.3 22 220-241 8-29 (81)
54 3a7p_A Autophagy protein 16; c 40.1 2.6E+02 0.0087 26.8 12.8 77 219-304 59-135 (152)
55 3o0z_A RHO-associated protein 38.5 2.8E+02 0.0096 26.8 16.2 85 220-304 43-129 (168)
56 4etp_A Kinesin-like protein KA 33.4 93 0.0032 33.0 7.7 21 220-240 5-25 (403)
57 3ghg_C Fibrinogen gamma chain; 32.0 62 0.0021 35.1 6.2 34 182-215 43-76 (411)
58 3hnw_A Uncharacterized protein 29.5 3.4E+02 0.012 25.0 12.6 78 267-345 57-134 (138)
59 2j1d_G DAAM1, disheveled-assoc 29.1 2.7E+02 0.0094 30.0 10.6 154 180-350 242-401 (483)
60 2i1j_A Moesin; FERM, coiled-co 29.0 1.1E+02 0.0039 33.8 7.8 21 332-352 409-429 (575)
61 3i00_A HIP-I, huntingtin-inter 28.8 2.4E+02 0.0081 25.7 8.5 6 277-282 73-78 (120)
62 3l4f_A RHO guanine nucleotide 28.6 84 0.0029 26.1 5.0 27 277-303 26-52 (61)
63 2l7b_A Apolipoprotein E, APO-E 28.4 98 0.0034 32.0 6.7 15 198-212 33-47 (307)
64 3ok8_A Brain-specific angiogen 27.0 3.5E+02 0.012 27.1 10.1 84 274-365 103-186 (222)
65 2ykt_A Brain-specific angiogen 25.9 5.1E+02 0.017 25.9 13.8 148 200-353 24-187 (253)
66 4e61_A Protein BIM1; EB1-like 25.8 1.1E+02 0.0039 27.6 5.8 34 217-250 3-36 (106)
67 1h7c_A Tubulin-specific chaper 25.5 2.2E+02 0.0074 25.4 7.6 29 227-255 9-37 (108)
68 3mq9_A Bone marrow stromal ant 25.4 1.1E+02 0.0036 32.0 6.4 43 218-260 397-439 (471)
69 1jad_A PLC-beta, phospholipase 24.2 5.8E+02 0.02 26.0 18.5 126 278-408 92-240 (251)
70 4gkw_A Spindle assembly abnorm 23.6 4.4E+02 0.015 25.0 9.4 94 301-400 26-119 (167)
71 3ghg_A Fibrinogen alpha chain; 23.1 2.5E+02 0.0085 31.7 8.9 107 265-411 57-163 (562)
72 2j69_A Bacterial dynamin-like 23.0 7.9E+02 0.027 27.5 13.2 72 245-332 598-669 (695)
73 3q8t_A Beclin-1; autophagy, AT 21.8 2.6E+02 0.009 24.3 7.2 26 330-355 34-59 (96)
74 2jee_A YIIU; FTSZ, septum, coi 21.8 2.6E+02 0.0089 24.2 7.0 51 215-265 17-70 (81)
75 3vem_A Helicase protein MOM1; 21.7 4.7E+02 0.016 24.0 9.6 38 276-319 61-98 (115)
76 3jsv_C NF-kappa-B essential mo 21.6 2.3E+02 0.0079 25.2 6.8 74 255-353 13-86 (94)
77 3hnw_A Uncharacterized protein 21.3 4.8E+02 0.017 24.0 11.4 45 214-258 55-101 (138)
78 3bas_A Myosin heavy chain, str 21.1 3.8E+02 0.013 22.7 11.6 64 270-347 19-82 (89)
79 2j69_A Bacterial dynamin-like 20.9 9.1E+02 0.031 27.0 14.5 51 360-410 600-654 (695)
80 2d1l_A Metastasis suppressor p 20.6 6.7E+02 0.023 25.3 13.4 67 184-258 62-132 (253)
81 4ad8_A DNA repair protein RECN 20.3 7.9E+02 0.027 26.1 15.3 36 222-257 183-218 (517)
82 3mq9_A Bone marrow stromal ant 20.0 7.4E+02 0.025 25.6 15.1 19 293-311 397-415 (471)
No 1
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=97.30 E-value=0.0072 Score=57.59 Aligned_cols=130 Identities=19% Similarity=0.347 Sum_probs=100.6
Q ss_pred hHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHH
Q 045616 196 STELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQ 275 (671)
Q Consensus 196 S~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~ 275 (671)
|+.|+..+|+.=.|+|. +..++.+|..++.+|++|+..+. +++.+. .++ .-+.+-+.
T Consensus 5 StKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~----~~~~l~----~~~--------~~~~~e~~ 61 (154)
T 2ocy_A 5 STQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKE----DYNTLK----REL--------SDRDDEVK 61 (154)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHH----HHHHHH----THH--------HHHHHHHH
T ss_pred HHHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----HHH--------hhhhHHHH
Confidence 68999999999767764 67889999999999999998764 233332 221 23566677
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHh
Q 045616 276 SVRDELEDERKLRKRSESLHRKLARELSEVKST-LSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALK 348 (671)
Q Consensus 276 slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss-~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LK 348 (671)
.|.++|..|+..|..+|.-..++-.||.+.-.| |..|=+=.-.+|+.+..+|.=-+.|-+.+++-+.-++.|-
T Consensus 62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq 135 (154)
T 2ocy_A 62 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLT 135 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999997554 5555555567899999999888888888777655555443
No 2
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.01 E-value=0.076 Score=47.34 Aligned_cols=91 Identities=18% Similarity=0.360 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 045616 223 LKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLAREL 302 (671)
Q Consensus 223 Lk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~EL 302 (671)
|..+|+.+|.+|++|..+... +.+-+..|+.+|..|+..|..+|.-..++-.||
T Consensus 3 ~~~~~e~lre~l~~le~~~~~--------------------------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSD--------------------------RDDEVKRLREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788888888888866533 333445578888899999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Q 045616 303 SEVKST-LSNALRELEGERRSRKLLEELCDEFAIGIKD 339 (671)
Q Consensus 303 sE~Kss-~~~alkelE~ERKaRellE~vCDELAkgI~e 339 (671)
.+.-.| |..|=+=.=.+|+.+..+|.--+.|...|+|
T Consensus 57 EeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 57 EDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887544 4555555556788888888777777666654
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.77 E-value=0.11 Score=55.65 Aligned_cols=122 Identities=17% Similarity=0.176 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 045616 222 ALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARE 301 (671)
Q Consensus 222 aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~E 301 (671)
.|+.|+.+-+..|+.|+.+.......+..+..++.+.+..+.....+. . ..++.|+ +..++.+..+.++.++
T Consensus 453 ~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~-~----~~~~~l~---~~~~~~~~~~~~~~~~ 524 (597)
T 3oja_B 453 QLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGL-A----RSSDNLN---KVFTHLKERQAFKLRE 524 (597)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS-S----CHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcccccc-C----CHHHHHH---HHHHHHHhhhhhhHHH
Confidence 345566666666666666655544444444444443333332110000 0 0001111 1122333455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhc
Q 045616 302 LSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKS 351 (671)
Q Consensus 302 LsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres 351 (671)
+...+.++..-.++|++-++.++.||..+++.-+.+.+.+.|+..++++-
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 66666666677777777778888888888877777777777776666653
No 4
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.95 E-value=0.44 Score=44.68 Aligned_cols=106 Identities=15% Similarity=0.307 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 045616 221 KALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLAR 300 (671)
Q Consensus 221 ~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ 300 (671)
..++.+|.-.+.+|++|+..+. +.+.+.+.+ ..+..-+..+..+|..|+..|..+|.-..++-.
T Consensus 11 ~~~r~~l~~~~~~~~~le~l~~----~l~~l~~~l------------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ 74 (135)
T 2e7s_A 11 NKSLKTIASQKAAIENYNQLKE----DYNTLKREL------------SDRDDEVKRLREDIAKENELRTKAEEEADKLNK 74 (135)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH----HHHHHHHHT------------TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888764 233333333 133344666899999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHH
Q 045616 301 ELSEVKST-LSNALRELEGERRSRKLLEELCDEFAIGIKDYDQ 342 (671)
Q Consensus 301 ELsE~Kss-~~~alkelE~ERKaRellE~vCDELAkgI~edka 342 (671)
||.+.-+| |..|=+=.-.+|+.+..+|.=-+.|-..+++-+.
T Consensus 75 ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 75 EVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDM 117 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997554 5566555667899999888888888777766433
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.22 E-value=0.4 Score=56.86 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRD 240 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E 240 (671)
+..|+.||...+..+..+..+
T Consensus 859 l~~L~~eL~el~~~L~~le~~ 879 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAE 879 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444443
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.15 E-value=0.87 Score=54.08 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 273 AVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEG 318 (671)
Q Consensus 273 ai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ 318 (671)
.+..++.+|..|+.....++....+|..++.+.+..+...-.+++.
T Consensus 893 e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 893 EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444454444444444444444444444444444443333333
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=92.03 E-value=7.1 Score=35.68 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 045616 223 LKTELDHARVKIKEL 237 (671)
Q Consensus 223 Lk~EL~~Ar~~I~eL 237 (671)
|+.+++.+...+.+|
T Consensus 11 l~~~~~~~~~~~~~l 25 (284)
T 1c1g_A 11 LKLDKENALDRADEA 25 (284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 333333333333333
No 8
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=90.84 E-value=3.4 Score=36.08 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHHhh----
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSK------EQDRIHAAVQSVRDELEDERKLRK---- 289 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsK------E~eki~aai~slk~ELe~ERk~Rr---- 289 (671)
|.+|+.|.+.|..++.++....+.... -..++.+|-.+.+.| +.+++...+......|+...+.+-
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~----~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAED----RCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999888776533322 222333333222222 346677777777888888888777
Q ss_pred hhHHHHHHH
Q 045616 290 RSESLHRKL 298 (671)
Q Consensus 290 r~E~ln~KL 298 (671)
...+||||+
T Consensus 87 evasLnRri 95 (101)
T 3u59_A 87 EVASLNRRI 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445566665
No 9
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=89.64 E-value=0.064 Score=48.09 Aligned_cols=39 Identities=36% Similarity=0.526 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 045616 273 AVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSN 311 (671)
Q Consensus 273 ai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~ 311 (671)
-|..+..||..|+-+||++|.+|.-|++||+.+|..+..
T Consensus 64 q~~~laqels~eklarkqleeln~~Lg~Els~iKl~lL~ 102 (110)
T 2hg7_A 64 QVELLAQELSQEKLARKQLEELNKTLGNELSDIKLSLLS 102 (110)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788889999999999999999999999999977643
No 10
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.25 E-value=5.4 Score=35.03 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-------hHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh---
Q 045616 220 IKALKTELDHARVKIKELLRDQQADR-------HEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRK--- 289 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~-------~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rr--- 289 (671)
|.+|+.|.+.|..++.++....+... .+|..|-+++.- =--+-|++...+...+..|+...+.+-
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~-----lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRV-----TEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999988888876543322 233333333210 011356777777777888888888777
Q ss_pred -hhHHHHHHH
Q 045616 290 -RSESLHRKL 298 (671)
Q Consensus 290 -r~E~ln~KL 298 (671)
...+||||+
T Consensus 86 ~ev~~L~Rri 95 (101)
T 3u1c_A 86 SEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 555666665
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.65 E-value=2.1 Score=50.92 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 045616 269 RIHAAVQSVRDELEDERKLRK 289 (671)
Q Consensus 269 ki~aai~slk~ELe~ERk~Rr 289 (671)
+...-+..|+.++++..++-+
T Consensus 957 ~~~~e~~~L~~~l~~le~~~~ 977 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMSEE 977 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455556555555555433
No 12
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=87.67 E-value=16 Score=33.27 Aligned_cols=8 Identities=13% Similarity=0.302 Sum_probs=2.9
Q ss_pred HhhHHHHH
Q 045616 397 KLGFEIEA 404 (671)
Q Consensus 397 kL~~elEa 404 (671)
++..+++.
T Consensus 269 ~~~~~~~~ 276 (284)
T 1c1g_A 269 AISEELDH 276 (284)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.73 E-value=8.2 Score=45.95 Aligned_cols=13 Identities=8% Similarity=-0.023 Sum_probs=6.3
Q ss_pred cchhhHHhhhhhh
Q 045616 361 QDHLILHISESWL 373 (671)
Q Consensus 361 eER~MLqmAEvWR 373 (671)
-+..++..++.|.
T Consensus 1042 l~~~~~~~~~~~~ 1054 (1080)
T 2dfs_A 1042 LNRRIHDQAKEIT 1054 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555444
No 14
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.46 E-value=8.6 Score=40.41 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=40.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 284 ERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 284 ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
..+..++.|.+-.++-.|...++.-....-.+.++.++....++.+-+|+-..|.+.++.+-.+.+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 3444555555555555555555555555555666666666667777777777777666666554443
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.44 E-value=18 Score=38.72 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHhh
Q 045616 268 DRIHAAVQSVRDELEDERKLRK----RSESLHRKLARELSEVKSTLSNALRELEGERRSR-------KLLEELCDEFAIG 336 (671)
Q Consensus 268 eki~aai~slk~ELe~ERk~Rr----r~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaR-------ellE~vCDELAkg 336 (671)
....+.++.++.+++..+..-+ .++....+|.+++..++.-......++.+.+++. +-+++-.+++=+.
T Consensus 473 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 552 (597)
T 3oja_B 473 IQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQ 552 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHH
Confidence 3455567777777776655433 2333335555555555555555555555444444 3344455555555
Q ss_pred ccccHHHHHHHhhhch
Q 045616 337 IKDYDQELHALKQKSD 352 (671)
Q Consensus 337 I~edkaEVe~LKres~ 352 (671)
+.+.++.+.+++++..
T Consensus 553 ~~~~~~~~~~l~~e~~ 568 (597)
T 3oja_B 553 LDNKRAKQAELRQETS 568 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHH
Confidence 6666666666666543
No 16
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=81.45 E-value=30 Score=31.09 Aligned_cols=100 Identities=22% Similarity=0.387 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 045616 221 KALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLAR 300 (671)
Q Consensus 221 ~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ 300 (671)
.....+|...|.+|..+..++....-+ -+.++.+++.+|...|.|-..|..+|.--..|-+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~le-------------------ldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK 76 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVE-------------------RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQ 76 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 445677888888888888776433332 3445566777777788888888777754444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhh
Q 045616 301 ELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQ 349 (671)
Q Consensus 301 ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKr 349 (671)
.|-++- +.+ -||| .+ +|.+-+||.--=..+++||.+|..
T Consensus 77 ~lD~~~--l~r--~dLE--~~----iesL~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 77 DVDNAS--LAR--LDLE--RK----VESLQEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHH--HHH--HHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccHHH--HHH--HHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443311 111 1222 22 344555555544556666666653
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=80.53 E-value=35 Score=33.51 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=22.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 045616 213 HASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLM 252 (671)
Q Consensus 213 ~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~ 252 (671)
+.++=-|=..|..||+++..++++|.......+.+++.+.
T Consensus 37 qesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k 76 (189)
T 2v71_A 37 QEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALK 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666666666666666665544444444443
No 18
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.42 E-value=32 Score=30.74 Aligned_cols=79 Identities=22% Similarity=0.398 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHH--HHHHHHHHHHHHH--------HHHHHHhh
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQD--RIHAAVQSVRDEL--------EDERKLRK 289 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~e--ki~aai~slk~EL--------e~ERk~Rr 289 (671)
...|+.+|.++..++.....| +..|+..|.+|+..+..-|.+ +|..-|..|-.-| -++|+.|-
T Consensus 7 ~e~lre~l~~le~~~~~~~~e-------~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~ 79 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDE-------VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKY 79 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777776666 345666666666655554333 3333333333322 34688899
Q ss_pred hhHHHHHHHHHHHHHH
Q 045616 290 RSESLHRKLARELSEV 305 (671)
Q Consensus 290 r~E~ln~KL~~ELsE~ 305 (671)
.+|.-|.+|..+|.|.
T Consensus 80 ~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 80 AIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999998764
No 19
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.29 E-value=26 Score=33.41 Aligned_cols=81 Identities=22% Similarity=0.396 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHH--HHHHHHHHHHHHH--------HHHHHHhhhhHHHH
Q 045616 226 ELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQD--RIHAAVQSVRDEL--------EDERKLRKRSESLH 295 (671)
Q Consensus 226 EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~e--ki~aai~slk~EL--------e~ERk~Rrr~E~ln 295 (671)
.|+.++.++.+|..+......++..|+..+++|+..+..-|++ +|..-|..|-.-| -++|+.|-.+|.-|
T Consensus 38 ~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~ 117 (154)
T 2ocy_A 38 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILN 117 (154)
T ss_dssp TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888778889999999999999887764444 4444555444433 35788899999999
Q ss_pred HHHHHHHHHHH
Q 045616 296 RKLARELSEVK 306 (671)
Q Consensus 296 ~KL~~ELsE~K 306 (671)
.+|-..|.|..
T Consensus 118 ~~L~~ql~e~~ 128 (154)
T 2ocy_A 118 KRLTEQLREKD 128 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887754
No 20
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=80.08 E-value=2.4 Score=47.06 Aligned_cols=104 Identities=16% Similarity=0.297 Sum_probs=43.2
Q ss_pred HHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 237 LLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALREL 316 (671)
Q Consensus 237 L~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkel 316 (671)
....++.+.-+|..+-.|..|||. .|..|+++ |..|+++|..+|.--.-|-.-|...+..+.++-.+|
T Consensus 291 f~~~r~~d~~e~qqm~~~a~e~~~-~~~~e~~~-----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (575)
T 2i1j_A 291 YMRRRKPDTIDVQQMKAQAREEKL-AKQAQREK-----------LQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANL 358 (575)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHH-HHHHHHTT-----------CCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCcHHHHHHHHHHHHHHH-HHHHHHHH-----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666654 33334333 555777777777666666666666666666666666
Q ss_pred HHHH-hhHHHH------HHHHHHHHhhccccHHHHHHHhhhch
Q 045616 317 EGER-RSRKLL------EELCDEFAIGIKDYDQELHALKQKSD 352 (671)
Q Consensus 317 E~ER-KaRell------E~vCDELAkgI~edkaEVe~LKres~ 352 (671)
++-. +++.|- |+-...|.+.-.+.+++.+.|+..+.
T Consensus 359 ~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~ 401 (575)
T 2i1j_A 359 LEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKN 401 (575)
T ss_dssp HHHHHC-------------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433 333222 22344455555555555555555543
No 21
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=78.03 E-value=5.4 Score=32.47 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 045616 299 ARELSEVKSTLSNALRELEGERRSRKLLEELCDEFA 334 (671)
Q Consensus 299 ~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELA 334 (671)
..|+.+.+.-+++.-+-||.|.|||.-||.+-..+.
T Consensus 16 kDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~ 51 (56)
T 2w6b_A 16 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVL 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556666777777777777766553
No 22
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.26 E-value=63 Score=31.88 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLI----RKSKEQDRIHAAVQSVRDELEDERKLRKRSESLH 295 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~a----wKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln 295 (671)
+..|+..+..++..|.++..+......+|+.+..++...+.. ..+|| ++.+..|++.=.+-...+|.--
T Consensus 41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE-------~~aL~kEie~~~~~i~~lE~ei 113 (256)
T 3na7_A 41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERE-------LRSLNIEEDIAKERSNQANREI 113 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555554444333211 12233 3445555554433333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhch
Q 045616 296 RKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSD 352 (671)
Q Consensus 296 ~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~ 352 (671)
..+..++.+.+..+..+-..++. .+.-++..-.++...+.+.++++..|..+..
T Consensus 114 le~~e~ie~~~~~l~~~~~~l~~---~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~ 167 (256)
T 3na7_A 114 ENLQNEIKRKSEKQEDLKKEMLE---LEKLALELESLVENEVKNIKETQQIIFKKKE 167 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333322222222221 1224455555666666666677766655543
No 23
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.90 E-value=66 Score=42.93 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhhhh-------hhHHHHHHHHhHHHH
Q 045616 227 LDHARVKIKELLRDQQAD-------RHEMDDLMKQIAEDK 259 (671)
Q Consensus 227 L~~Ar~~I~eL~~E~~s~-------~~eie~l~KqlaEEK 259 (671)
|..|..+|.+|..+-... ..+.+.+|.++..++
T Consensus 1929 L~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~ 1968 (3245)
T 3vkg_A 1929 LRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQ 1968 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555544433222 234556666666554
No 24
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=74.51 E-value=14 Score=41.12 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhhh
Q 045616 229 HARVKIKELLRDQQAD 244 (671)
Q Consensus 229 ~Ar~~I~eL~~E~~s~ 244 (671)
.-+..|+||+.|++.+
T Consensus 94 ~~~~Kl~eLE~e~k~d 109 (526)
T 3iyk_A 94 GIQAKLKELEDEQRNE 109 (526)
T ss_pred HHHHHHHHHHHHHhhH
Confidence 4566666666665443
No 25
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=71.28 E-value=22 Score=30.46 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-------ccccHHHHHHHhhh
Q 045616 295 HRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIG-------IKDYDQELHALKQK 350 (671)
Q Consensus 295 n~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkg-------I~edkaEVe~LKre 350 (671)
|.+|.-|+-.++.++-.+..-||.|-..|.-+|.-..-|-+. --+.++.|+.|+.+
T Consensus 16 ~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 16 KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666665443333333 33455566665554
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.33 E-value=48 Score=34.75 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhccccHHHHHHHh
Q 045616 326 LEELCDEFAIGIKDYDQELHALK 348 (671)
Q Consensus 326 lE~vCDELAkgI~edkaEVe~LK 348 (671)
++..+++...+|...++|-+.++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~ 455 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLK 455 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhh
Confidence 44444444444444444433333
No 27
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=66.08 E-value=97 Score=30.16 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhcccc--HHHHHHHhhh
Q 045616 326 LEELCDEFAIGIKDY--DQELHALKQK 350 (671)
Q Consensus 326 lE~vCDELAkgI~ed--kaEVe~LKre 350 (671)
.|+.|++++....+. +-+|..+-++
T Consensus 140 ~eeeS~~l~~~F~~~~~e~dv~~Fl~~ 166 (192)
T 2p22_C 140 LDEESSQLETTTRSIDSADDLDQFIKN 166 (192)
T ss_dssp HHHHHHHHHHSCSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccchHHHHHHH
Confidence 567899999888775 7788766655
No 28
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=65.36 E-value=43 Score=30.58 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh
Q 045616 310 SNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK 350 (671)
Q Consensus 310 ~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre 350 (671)
.=+-.|.+.||.+|+-+ +-++.+++.+++.|.++
T Consensus 72 ~IY~~DF~aERadREkl-------~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 72 DIYKADFQAERHAREKL-------VEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchhhHHHH-------HhHHHHHHHHHHHHHHH
Confidence 34556777777777644 33344444555555554
No 29
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.28 E-value=87 Score=41.83 Aligned_cols=101 Identities=14% Similarity=0.218 Sum_probs=49.3
Q ss_pred HHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 045616 251 LMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELC 330 (671)
Q Consensus 251 l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vC 330 (671)
+.+++-.+|..--...++++..-|+-|.+=-+.=-.+.+.++.+- .+|.+.+..+.+.|++++.++..-+--.+.+
T Consensus 1903 ~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~----~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v 1978 (3245)
T 3vkg_A 1903 QVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKN----RELDVKNEQANQKLKQMVQDQQAAEIKQKDA 1978 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666555555555555554444332222222222222222 2344444445555555555554444444455
Q ss_pred HHHHhhccccHHHHHHHhhhchhhh
Q 045616 331 DEFAIGIKDYDQELHALKQKSDKNW 355 (671)
Q Consensus 331 DELAkgI~edkaEVe~LKres~k~~ 355 (671)
.+....+..-.+|+.+.|.+++++.
T Consensus 1979 ~~~~~~~~~~~~ei~~~k~~~e~dL 2003 (3245)
T 3vkg_A 1979 RELQVQLDVRNKEIAVQKVKAYADL 2003 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555566666666665554
No 30
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=64.85 E-value=48 Score=36.88 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHH--HHHhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 045616 227 LDHARVKIKELLRDQQADRHEMDDL--MKQIAEDKLIRKSKEQDRIHAAVQSVRDE 280 (671)
Q Consensus 227 L~~Ar~~I~eL~~E~~s~~~eie~l--~KqlaEEK~awKsKE~eki~aai~slk~E 280 (671)
|+.||+.|..+.....+-+..+... -.|-+++.+.-+-||++.++.++-.++..
T Consensus 358 lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 4444444444444443333333322 13445555555556666676676666655
No 31
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=64.72 E-value=1.1e+02 Score=30.07 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=14.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHH
Q 045616 314 RELEGERRSRKLLEELCDEFAIGIKDYDQELHAL 347 (671)
Q Consensus 314 kelE~ERKaRellE~vCDELAkgI~edkaEVe~L 347 (671)
++++.-++....+|+-=-++...|...++++..+
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~ 130 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDL 130 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444434333333
No 32
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=64.48 E-value=1.1e+02 Score=29.72 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHHHHHHHHHHHH
Q 045616 265 KEQDRIHAAVQSVRDELEDERKLRKRSESLH-------RKLARELSEVKSTLSNA 312 (671)
Q Consensus 265 KE~eki~aai~slk~ELe~ERk~Rrr~E~ln-------~KL~~ELsE~Kss~~~a 312 (671)
..++.+..-+..|+..|+.||+.|.+.+-+. .-|--||..+|....++
T Consensus 62 ~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~ 116 (168)
T 3o0z_A 62 NSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV 116 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666666666555422 23444555555544444
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.36 E-value=88 Score=28.07 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDEL 281 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL 281 (671)
+..-+.|+-..|..|+.|..|-.+.+.....|-..+++=. .+-..+-..+.+.|..+..+|
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e-~~~~~~l~~~q~~i~~lE~eL 91 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE-QRGELALKDARNKLAELEEAL 91 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhH
Confidence 5566777777777888888877777776677766675433 233444445555555555444
No 34
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=62.22 E-value=47 Score=30.35 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRK 297 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 297 (671)
.+|-.|+.|++.-+..+..|..|.+..-. .|..+ |-.|..||+.=|+.++.+-.-|..
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~---ql~~~-------------------i~~Le~eL~e~r~~~q~a~~e~e~ 72 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVL---QLKGH-------------------VSELEADLAEQQHLRQQAADDCEF 72 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999888755433 33333 334555566656555555555555
Q ss_pred HHHHHHHH
Q 045616 298 LARELSEV 305 (671)
Q Consensus 298 L~~ELsE~ 305 (671)
|-.|+.+.
T Consensus 73 Lr~e~~~l 80 (120)
T 3i00_A 73 LRAELDEL 80 (120)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555543
No 35
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.83 E-value=40 Score=31.62 Aligned_cols=89 Identities=21% Similarity=0.341 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHH--HHHHHHHHHHHHH--------HHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQD--RIHAAVQSVRDEL--------EDERKL 287 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~e--ki~aai~slk~EL--------e~ERk~ 287 (671)
+-.++=-.+|+..+.+.++|..+......++..|...+++|+..+..-|.+ +|..-|..|-.-| .++|+.
T Consensus 18 ~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~ 97 (135)
T 2e7s_A 18 ASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARME 97 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777888888888877777788999999999999887766554 4444455444443 346888
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 045616 288 RKRSESLHRKLARELSEVK 306 (671)
Q Consensus 288 Rrr~E~ln~KL~~ELsE~K 306 (671)
|-.+|.-|.+|-..|.|..
T Consensus 98 ~~~~e~r~~~L~~ql~e~e 116 (135)
T 2e7s_A 98 KYAIEILNKRLTEQLREKD 116 (135)
T ss_dssp HHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888999888887754
No 36
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=61.81 E-value=18 Score=30.00 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcc
Q 045616 298 LARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIK 338 (671)
Q Consensus 298 L~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~ 338 (671)
|..|+.+.+.-..+.-+=+|.|.|+|.-||.+|-.+.+...
T Consensus 12 lkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 12 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45566666666667777788889999999999888877643
No 37
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=60.88 E-value=95 Score=27.96 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHhhccc
Q 045616 277 VRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRK-------LLEELCDEFAIGIKD 339 (671)
Q Consensus 277 lk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRe-------llE~vCDELAkgI~e 339 (671)
|...|..|+-+-.-+|....+|...-.+...-+.-+-..|+.+..... -|++-|++|=+.|.+
T Consensus 53 L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 53 LQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443344444444444333322 345555555555544
No 38
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=59.03 E-value=1e+02 Score=27.75 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 045616 274 VQSVRDELEDERKLRKRSESLHRKLARELSE 304 (671)
Q Consensus 274 i~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE 304 (671)
|..+++.|+.+-+.|+.+|.-|.+|..|..+
T Consensus 22 l~~lke~l~k~e~~r~ele~~~~~l~~Ek~~ 52 (129)
T 2fxo_A 22 FTRLKEALEKSEARRKELEEKMVSLLQEKND 52 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555544
No 39
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=58.34 E-value=20 Score=29.27 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Q 045616 277 VRDELEDERKLRKRSESLHRKLAR 300 (671)
Q Consensus 277 lk~ELe~ERk~Rrr~E~ln~KL~~ 300 (671)
|+.=||.|.|.||++|.+=+|+.+
T Consensus 29 m~k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 29 MKKSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444588999999999999999843
No 40
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=57.00 E-value=1.4e+02 Score=33.38 Aligned_cols=69 Identities=20% Similarity=0.157 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhhHHHHHHHHHH
Q 045616 267 QDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSN--------------ALRELEGERRSRKLLEELCDE 332 (671)
Q Consensus 267 ~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~--------------alkelE~ERKaRellE~vCDE 332 (671)
+.+-..++++++.||+. +|..|+.-+++++.-... +.-...+-.-.=..++..-|+
T Consensus 344 ~~~t~~~~~~~~~~~~~----------~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~ 413 (551)
T 2b5u_A 344 QAKAVQVYNSRKSELDA----------ANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDA 413 (551)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHh----------hhhHHHHHHHhhhhhhhhccChhhccchhhhhccchhhhhhhhhhhHHHHHHH
Confidence 35666889999999954 899999888876533200 010111111123456778889
Q ss_pred HHhhccccHHHHH
Q 045616 333 FAIGIKDYDQELH 345 (671)
Q Consensus 333 LAkgI~edkaEVe 345 (671)
+++++.++++++-
T Consensus 414 ~~~~~s~~~~~ls 426 (551)
T 2b5u_A 414 AAKEKSDADAALS 426 (551)
T ss_dssp HHHHHHHHHHHHH
T ss_pred Hhhcccchhhhhh
Confidence 9999988888765
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.52 E-value=1.1e+02 Score=27.45 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDEL 281 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~EL 281 (671)
.+...+.|+-..|..|+.|..|-.+.+..-..|-..|++=. .+-..+...+.+.|..+..+|
T Consensus 32 ~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e-~~~~~~l~~~q~~i~~lE~eL 93 (131)
T 3tnu_A 32 LVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETK-GRYCMQLAQIQEMIGSVEEQL 93 (131)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888888887777766666666665432 233444445555555544444
No 42
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=52.59 E-value=1.9e+02 Score=28.94 Aligned_cols=134 Identities=21% Similarity=0.261 Sum_probs=67.8
Q ss_pred cccccccccchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHH-HHH----HHHHHHHHhhhhhhHHHHHHHHhHHHHH
Q 045616 186 VGESRYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDH-ARV----KIKELLRDQQADRHEMDDLMKQIAEDKL 260 (671)
Q Consensus 186 ~~e~~~~L~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~-Ar~----~I~eL~~E~~s~~~eie~l~KqlaEEK~ 260 (671)
+.|.-.+-.+|+||-.||-+|- + .-+.|..+|+. .++ -|.+|+.--..+.+-|....|++.-|-
T Consensus 60 ige~A~~S~~skeLG~vL~qis---~-------~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~~e~- 128 (222)
T 3ok8_A 60 IGEQALQSSTSQILGEILVQMS---D-------TQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEY- 128 (222)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhccCCchhHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3333333336789999999993 2 23445555544 222 355555555556666666677665442
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHH-HHHhh----hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHH
Q 045616 261 IRKSKEQDRIHAAVQSVRDELEDE-RKLRK----RSESLHRKLARELSEVKSTLSNALRE--LEGERRSRKLLEELCDEF 333 (671)
Q Consensus 261 awKsKE~eki~aai~slk~ELe~E-Rk~Rr----r~E~ln~KL~~ELsE~Kss~~~alke--lE~ERKaRellE~vCDEL 333 (671)
|. +.. .+.-.+.||..= ||..+ -.|.++.+= +|....+...+++ +|..||=+-|+|.-|- |
T Consensus 129 --k~----~~~-~leK~~~elkK~~rksqk~~~k~~e~v~~~q----~el~~f~~~s~r~Al~EErRRYcFL~ekhc~-~ 196 (222)
T 3ok8_A 129 --RH----RAA-NLEKCMSELWRMERKRDKNAREMKESVNRLH----AQMQAFVSESKRAAELEEKRRYRFLAEKHLL-L 196 (222)
T ss_dssp --HH----HHH-HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred --hH----HHH-HHHHHHHHHHHhhhhhccChHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 22 211 233333344222 22211 134443322 2333333333333 5777888899999995 4
Q ss_pred HhhccccHH
Q 045616 334 AIGIKDYDQ 342 (671)
Q Consensus 334 AkgI~edka 342 (671)
++-+-.|=.
T Consensus 197 ~~~~~~~h~ 205 (222)
T 3ok8_A 197 SNTFLQFLG 205 (222)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444333
No 43
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=52.40 E-value=1.6e+02 Score=28.07 Aligned_cols=22 Identities=5% Similarity=0.194 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045616 296 RKLARELSEVKSTLSNALRELE 317 (671)
Q Consensus 296 ~KL~~ELsE~Kss~~~alkelE 317 (671)
.++.+++.++...+.++.+.|+
T Consensus 125 ~~~~~~~~~~~~~l~Kak~~Y~ 146 (276)
T 2v0o_A 125 LEAVQTIQSITQALQKSKENYN 146 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555544443
No 44
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=51.06 E-value=44 Score=31.23 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh---HHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQI---AEDKLIRK---SKEQDRIHAAVQSVRDELEDERKLRKRSES 293 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql---aEEK~awK---sKE~eki~aai~slk~ELe~ERk~Rrr~E~ 293 (671)
|.+|-.||+.|+....+-+.++++.....-.+-+++ ..|.-..| .=.-++++=-+++|..+|.-||.. +..
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~---~~e 80 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQA---ASE 80 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 567888999999999999999888776554443332 22222211 123466777788999999888764 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 294 LHRKLARELSEVKSTLSNALRELEG 318 (671)
Q Consensus 294 ln~KL~~ELsE~Kss~~~alkelE~ 318 (671)
--+| |+..+.|..+..+||.+
T Consensus 81 EKrk----LAqLQ~AY~~LfqeYd~ 101 (130)
T 3cl3_D 81 EKRK----LAQLQVAYHQLFQEYDN 101 (130)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHH
Confidence 2233 56678888888888877
No 45
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=49.69 E-value=3.2e+02 Score=30.60 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhh---chhhhccCCccchhh-HHhhhhhhhhhhhhhHHHhhhc
Q 045616 312 ALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQK---SDKNWTGKGEQDHLI-LHISESWLDERMQMKLEEAQYG 387 (671)
Q Consensus 312 alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKre---s~k~~~ee~eeER~M-LqmAEvWREERVQMKL~eAk~~ 387 (671)
.-|+++.|+..++.+|.-...|..-..+.++-++.-++. ..+...+.+|+||.. ++=-+.-.+.++|.+-.-.+.+
T Consensus 485 ~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g 564 (592)
T 1f5n_A 485 KEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 564 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999888888877766666656544333 223333445666653 3333444455555544444555
Q ss_pred ccchhhHHHHhhHHHHHHHHh
Q 045616 388 LSEKNSIVDKLGFEIEAYLQA 408 (671)
Q Consensus 388 leeK~s~vdkL~~elEaFL~~ 408 (671)
|.+|. +.|..||+.+=+.
T Consensus 565 ~~~~~---~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 565 FQKES---RIMKNEIQDLQTK 582 (592)
T ss_dssp CHHHH---HHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHh
Confidence 66554 4555666665443
No 46
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=48.46 E-value=1.5e+02 Score=26.50 Aligned_cols=84 Identities=15% Similarity=0.252 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRK 297 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~K 297 (671)
+.|..|+..|+.+-..=-.|.-|....+..++.|..++.+|... +..+.+.|..++..++++-=.|-.+|.--.-
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~-----r~~~E~di~~lrK~lD~~~l~r~dLE~~ies 94 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQ-----REEAENTLQSFRQDVDNASLARLDLERKVES 94 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 35888888888888888888888888888999999999888654 3446677888888898888777777777777
Q ss_pred HHHHHHHHH
Q 045616 298 LARELSEVK 306 (671)
Q Consensus 298 L~~ELsE~K 306 (671)
|..||.=.|
T Consensus 95 L~eEl~FLK 103 (119)
T 3ol1_A 95 LQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776444
No 47
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=46.88 E-value=34 Score=36.57 Aligned_cols=32 Identities=34% Similarity=0.453 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 045616 221 KALKTELDHARVKIKELLRDQQADRHEMDDLM 252 (671)
Q Consensus 221 ~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~ 252 (671)
..|+.||+..+.++++|+++.+..+.+++.+-
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888887655444444443
No 48
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=44.60 E-value=2.3e+02 Score=28.06 Aligned_cols=64 Identities=11% Similarity=0.185 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELE 282 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe 282 (671)
-+..|..+|...+.++.+|...-.+..-+++.+.|+...|+...+.--.+++-..|-.+-+-|+
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnle 123 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFE 123 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3578888999999999999888888888999999999999887777777776666666666664
No 49
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.08 E-value=2e+02 Score=26.64 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHH
Q 045616 221 KALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKL 260 (671)
Q Consensus 221 ~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~ 260 (671)
.-|+.+|-+|+.-.++-+.+--+-.+-|..|+.-|.+||+
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~eka 67 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA 67 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888877777777888999999987775
No 50
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=43.37 E-value=4e+02 Score=29.96 Aligned_cols=71 Identities=8% Similarity=0.113 Sum_probs=40.4
Q ss_pred HhhccccHHHHHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHhh
Q 045616 334 AIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAK 409 (671)
Q Consensus 334 AkgI~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k 409 (671)
-+-+.+..+++..+-+- .+ +=++-...|-||+- |--.|-|.+|--++.+|.+=....+.-..+|-.-|..+
T Consensus 362 n~~~~~~~~~~~~f~~~---n~-~p~~~Gh~~w~~~~-~~~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~R 432 (551)
T 2b5u_A 362 NKTLADAIAEIKQFNRF---AH-DPMAGGHRMWQMAG-LKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESR 432 (551)
T ss_dssp HHHHHHHHHHHHHHGGG---TT-CTTSTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhhhhh---cc-Chhhccchhhhhcc-chhhhhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 33344444444444332 22 23567789999987 88888887766665555543333344455555555544
No 51
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=42.07 E-value=1.4e+02 Score=32.91 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 045616 197 TELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQI 255 (671)
Q Consensus 197 ~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~Kql 255 (671)
.+|=..|.+| +....+.--+|.+|+..|...+.++.+++.--+.+..+|+...+.+
T Consensus 103 qeLe~~l~~l---sn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 103 RDLKDRVAKF---SDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 4555555555 3333333457888888888888888887776555555566555544
No 52
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=41.28 E-value=37 Score=28.77 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=39.7
Q ss_pred ccccCcccHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHH
Q 045616 209 LEEQHASNVSL--IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLI 261 (671)
Q Consensus 209 leeq~~s~~Sl--v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~a 261 (671)
+-++++..|.+ |--+..||+++++.|+.|++|--..+-.|=+|---||-||.+
T Consensus 15 fp~~epp~m~l~~vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTlLAkerks 69 (72)
T 1k1f_A 15 FPDSEPPRMELRSVGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKEKKS 69 (72)
T ss_dssp CTTSCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CCCCCCcHhHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 44554444433 677899999999999999999887777788888778777644
No 53
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=40.62 E-value=1.6e+02 Score=24.54 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 045616 220 IKALKTELDHARVKIKELLRDQ 241 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~ 241 (671)
|.+|+.|++.|..++.++...-
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l 29 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADK 29 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999988887765
No 54
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=40.14 E-value=2.6e+02 Score=26.78 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 045616 219 LIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKL 298 (671)
Q Consensus 219 lv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL 298 (671)
+|+.++++++ .|..|..|....+.+|..|-.-+ .=|+|--+.+...+.+++-++..=-.-.++++.-|.+|
T Consensus 59 ~vs~~~~~~~----~I~~L~~El~~l~~ki~dLeeel-----~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 59 IVSHDDALLN----TLAILQKELKSKEQEIRRLKEVI-----ALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHH----HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665533 56666666655555554442222 23466677888888888888776555666777778877
Q ss_pred HHHHHH
Q 045616 299 ARELSE 304 (671)
Q Consensus 299 ~~ELsE 304 (671)
+.=+-.
T Consensus 130 V~RWM~ 135 (152)
T 3a7p_A 130 VARWLK 135 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766644
No 55
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=38.53 E-value=2.8e+02 Score=26.81 Aligned_cols=85 Identities=12% Similarity=0.181 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKLIRKSKEQ--DRIHAAVQSVRDELEDERKLRKRSESLHRK 297 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~awKsKE~--eki~aai~slk~ELe~ERk~Rrr~E~ln~K 297 (671)
++++..-+.--+..+..|...+-.-.+++..|--+|..||..|.-... --...-|.+|..||+.=|-.-.+++.-|++
T Consensus 43 ~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~ 122 (168)
T 3o0z_A 43 ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKE 122 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555455556778888888888899999999999999988876544 233456889999999988888899999999
Q ss_pred HHHHHHH
Q 045616 298 LARELSE 304 (671)
Q Consensus 298 L~~ELsE 304 (671)
|..-|++
T Consensus 123 L~Ekl~~ 129 (168)
T 3o0z_A 123 AQDMLNH 129 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888764
No 56
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.35 E-value=93 Score=33.02 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045616 220 IKALKTELDHARVKIKELLRD 240 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E 240 (671)
|.+|+.||...+.++.+|+++
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~ 25 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEK 25 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444444
No 57
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=31.96 E-value=62 Score=35.06 Aligned_cols=34 Identities=9% Similarity=0.209 Sum_probs=25.1
Q ss_pred cccccccccccccchHHHHHHHHHhhcccccCcc
Q 045616 182 FKGRVGESRYNLKTSTELLKVLNRIWSLEEQHAS 215 (671)
Q Consensus 182 ~k~R~~e~~~~L~TS~ELlkVLnrIW~leeq~~s 215 (671)
.+..|.++++.-.+..++++.|.-+|...+.+..
T Consensus 43 L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~ 76 (411)
T 3ghg_C 43 LEDILHQVENKTSEVKQLIKAIQLTYNPDESSKP 76 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCC
Confidence 3445667777777889999999999977666544
No 58
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.53 E-value=3.4e+02 Score=25.02 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHH
Q 045616 267 QDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELH 345 (671)
Q Consensus 267 ~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe 345 (671)
+--|=+||. +.+||-..++--..++.....+.+|+.+.|.-+..+--.+|.-++.-+=+.+--++|-+.|...+++++
T Consensus 57 r~aVLaALN-iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 57 LRTDMMYLN-IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445554 677887777777777777777788888887777776666655555444444444444444444444443
No 59
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=29.12 E-value=2.7e+02 Score=29.95 Aligned_cols=154 Identities=16% Similarity=0.250 Sum_probs=67.3
Q ss_pred cccccccccccccccchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHH
Q 045616 180 LDFKGRVGESRYNLKTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDK 259 (671)
Q Consensus 180 l~~k~R~~e~~~~L~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK 259 (671)
|+.=.+|.++..+....+-||+.|-.+ ++++.+.-..+..-|..=-.-|+..+.+|..+-...++.+..+-+.+..-+
T Consensus 242 L~sL~KL~d~Ks~~d~k~TLLhylv~~--v~~~~p~l~~f~~eL~~v~~Askv~~~~l~~~~~~L~~~l~~v~~~l~~~~ 319 (483)
T 2j1d_G 242 ISSLNKIADTKSSIDKNITLLHYLITI--VENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQK 319 (483)
T ss_dssp GGGGGGGGGSBCSSCTTCBHHHHHHHH--HHHHCGGGGGHHHHTTTHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhcccCCCCCccHHHHHHHH--HHHhCchhhchHHHHhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444456777766544455588888777 344443322222212111123444455555554444444433333332111
Q ss_pred HH---hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HH
Q 045616 260 LI---RKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCD---EF 333 (671)
Q Consensus 260 ~a---wKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCD---EL 333 (671)
.. -..+=.+++...+.....+++ .|...+.+++..|..++.-+= |--...-.++++. +|
T Consensus 320 ~~~~~~~d~f~~~m~~Fl~~a~~~~~--------------~L~~~~~~~~~~~~~l~~yFG-Ed~~~~~~~~fF~~~~~F 384 (483)
T 2j1d_G 320 SQPPQPGDKFVSVVSQFITVASFSFS--------------DVEDLLAEAKDLFTKAVKHFG-EEAGKIQPDEFFGIFDQF 384 (483)
T ss_dssp TSCCCTTCCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHTT-CCTTSCCHHHHHHHHHHH
T ss_pred ccCCCchhhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhC-CCCCCCCHHHHHHHHHHH
Confidence 00 000113345555555444443 344455556666666655542 2211112344443 33
Q ss_pred HhhccccHHHHHHHhhh
Q 045616 334 AIGIKDYDQELHALKQK 350 (671)
Q Consensus 334 AkgI~edkaEVe~LKre 350 (671)
+.....-..|++.++++
T Consensus 385 ~~~f~~A~~en~~~~~~ 401 (483)
T 2j1d_G 385 LQAVSEAKQENENMRKK 401 (483)
T ss_dssp HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444555555444
No 60
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=29.01 E-value=1.1e+02 Score=33.82 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHhhccccHHHHHHHhhhch
Q 045616 332 EFAIGIKDYDQELHALKQKSD 352 (671)
Q Consensus 332 ELAkgI~edkaEVe~LKres~ 352 (671)
.|+.++.+++.++..|..++.
T Consensus 409 ~l~~~~~~~~~~~~~~~~~~~ 429 (575)
T 2i1j_A 409 KLEDEIRAKQEEVSRIQQEVE 429 (575)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888887777754
No 61
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=28.77 E-value=2.4e+02 Score=25.71 Aligned_cols=6 Identities=50% Similarity=0.916 Sum_probs=2.2
Q ss_pred HHHHHH
Q 045616 277 VRDELE 282 (671)
Q Consensus 277 lk~ELe 282 (671)
|+.|++
T Consensus 73 Lr~e~~ 78 (120)
T 3i00_A 73 LRAELD 78 (120)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 62
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=28.63 E-value=84 Score=26.06 Aligned_cols=27 Identities=33% Similarity=0.604 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 045616 277 VRDELEDERKLRKRSESLHRKLARELS 303 (671)
Q Consensus 277 lk~ELe~ERk~Rrr~E~ln~KL~~ELs 303 (671)
++.=|+.|.|.|+++|.+=+|+.+...
T Consensus 26 ~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 26 MKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444588899999999999999987654
No 63
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=28.41 E-value=98 Score=31.99 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=8.7
Q ss_pred HHHHHHHHhhccccc
Q 045616 198 ELLKVLNRIWSLEEQ 212 (671)
Q Consensus 198 ELlkVLnrIW~leeq 212 (671)
-|=.|.+.+|..-++
T Consensus 33 ~~e~v~~~fwdY~~~ 47 (307)
T 2l7b_A 33 RWELALGRFWDYLRW 47 (307)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 344566677765544
No 64
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=27.02 E-value=3.5e+02 Score=27.11 Aligned_cols=84 Identities=13% Similarity=0.174 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchh
Q 045616 274 VQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDK 353 (671)
Q Consensus 274 i~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k 353 (671)
|..|...++...|- +....++...|.-.--.++.+|..+|.+-+|... .++ .+.-..|.....|++..-+++-|
T Consensus 103 I~pLE~k~e~D~k~---i~~~~K~y~~e~k~~~~~leK~~~elkK~~rksq--k~~-~k~~e~v~~~q~el~~f~~~s~r 176 (222)
T 3ok8_A 103 LQHMEKNTKLDMQF---IKDSCQHYEIEYRHRAANLEKCMSELWRMERKRD--KNA-REMKESVNRLHAQMQAFVSESKR 176 (222)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--TTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhc--cCh-HHHHHHHHHHHhHHHHHHHHHHH
Confidence 44444444444433 5555677777777777778888888877644332 111 22223345566677777777655
Q ss_pred hhccCCccchhh
Q 045616 354 NWTGKGEQDHLI 365 (671)
Q Consensus 354 ~~~ee~eeER~M 365 (671)
.-. +||.|+-
T Consensus 177 ~Al--~EErRRY 186 (222)
T 3ok8_A 177 AAE--LEEKRRY 186 (222)
T ss_dssp HHH--HHHHHHH
T ss_pred HHH--HHHHHHH
Confidence 442 3455543
No 65
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=25.94 E-value=5.1e+02 Score=25.91 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=79.2
Q ss_pred HHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHH------HHHhhhhhhHHHHHHHHhHHHHHHhhhhHHHHHHHH
Q 045616 200 LKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKEL------LRDQQADRHEMDDLMKQIAEDKLIRKSKEQDRIHAA 273 (671)
Q Consensus 200 lkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL------~~E~~s~~~eie~l~KqlaEEK~awKsKE~eki~aa 273 (671)
++-.|=+| ++--...-.+.+||++=...+.+=+.-| -..-++. ++|-..+-++++--..-.++-..-.++.
T Consensus 24 m~~~~P~~--e~li~~~~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs-~elG~~L~~i~~~~r~ie~~l~~~~~~~ 100 (253)
T 2ykt_A 24 MEQFNPSL--RNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGS-KELGDVLFQMAEVHRQIQNQLEEMLKSF 100 (253)
T ss_dssp HHTHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454 4443344456677766666655444433 2222343 6777777777765444444444444454
Q ss_pred ----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHhhccccHHH
Q 045616 274 ----VQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRK------LLEELCDEFAIGIKDYDQE 343 (671)
Q Consensus 274 ----i~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRe------llE~vCDELAkgI~edkaE 343 (671)
|..|+..+|.-.|. +-.+-++..+|......++.++..|+.+=+|.+. ..++.-++....|.+-+.+
T Consensus 101 ~~~li~pL~~kie~d~K~---v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~KK~k~gk~~~~~~~~~~~~~e~v~~~~~~ 177 (253)
T 2ykt_A 101 HNELLTQLEQKVELDSRY---LSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGE 177 (253)
T ss_dssp HTTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 66666666655443 3445567777777777777777766655554332 1122224444445555556
Q ss_pred HHHHhhhchh
Q 045616 344 LHALKQKSDK 353 (671)
Q Consensus 344 Ve~LKres~k 353 (671)
++..-+++.+
T Consensus 178 le~~~~~~lr 187 (253)
T 2ykt_A 178 LENYVSDGYK 187 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6555555443
No 66
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.76 E-value=1.1e+02 Score=27.57 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 045616 217 VSLIKALKTELDHARVKIKELLRDQQADRHEMDD 250 (671)
Q Consensus 217 ~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~ 250 (671)
++-+.||..||..++.+|.+|.++-...+-.++.
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~ 36 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVST 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557899999999999999988876444433333
No 67
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=25.52 E-value=2.2e+02 Score=25.35 Aligned_cols=29 Identities=10% Similarity=0.207 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q 045616 227 LDHARVKIKELLRDQQADRHEMDDLMKQI 255 (671)
Q Consensus 227 L~~Ar~~I~eL~~E~~s~~~eie~l~Kql 255 (671)
|--.-.-|+.|.+|..+|++|++..-.++
T Consensus 9 LkIkt~~vkRL~KE~~~Y~kE~~~q~~ri 37 (108)
T 1h7c_A 9 IKIKTGVVRRLVKERVMYEKEAKQQEEKI 37 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667888888888888887655554
No 68
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.44 E-value=1.1e+02 Score=32.03 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDKL 260 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK~ 260 (671)
.....|+..|+++|.-..++++.--+-.+-+--|+.-|.-++.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA 439 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence 5578899999999999999888777777777777777655543
No 69
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=24.24 E-value=5.8e+02 Score=26.00 Aligned_cols=126 Identities=14% Similarity=0.136 Sum_probs=75.3
Q ss_pred HHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH------hhHHHHHHHHHHHHhhccccHHHHHHHhh
Q 045616 278 RDELEDERKL-RKRSESLHRKLARELSEVKSTLSNALR-ELEGER------RSRKLLEELCDEFAIGIKDYDQELHALKQ 349 (671)
Q Consensus 278 k~ELe~ERk~-Rrr~E~ln~KL~~ELsE~Kss~~~alk-elE~ER------KaRellE~vCDELAkgI~edkaEVe~LKr 349 (671)
.+..+.|+.+ +.|+...+.+|..=+-++..+=.+.|+ -.|+|. .++.-+| -+.+.... .-+++|-+..++
T Consensus 92 ~~q~~eE~~~k~~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~kks~e-~i~e~~~k-tK~K~e~Er~~r 169 (251)
T 1jad_A 92 EEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLD-RIQVMMRS-TSDKAAQERLKK 169 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTT-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-cchHHHHHHHHH
Confidence 3334555544 567888888887666666666555555 235544 2344444 33344432 267776666666
Q ss_pred hchhhhccCCccchhhHHhhhhhhhhhhhhhHHHhh---------------hcccchhhHHHHhhHHHHHHHHh
Q 045616 350 KSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQ---------------YGLSEKNSIVDKLGFEIEAYLQA 408 (671)
Q Consensus 350 es~k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk---------------~~leeK~s~vdkL~~elEaFL~~ 408 (671)
+-..-...++-++|.-|.|+-.|+.|++.-+=.+-- ..+++| +..|-.||..|++.
T Consensus 170 Ein~s~ike~veerkrl~~kQ~k~qEkL~~~h~e~le~l~~e~~k~~~~~~~~~q~~---~~~l~~ei~e~~~~ 240 (251)
T 1jad_A 170 EINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEK---LKTLTVEVQEMVKN 240 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HhcChHHHHHHHHH
Confidence 654444455678999999999999998865433322 222333 34566688777754
No 70
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=23.55 E-value=4.4e+02 Score=24.99 Aligned_cols=94 Identities=23% Similarity=0.173 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchhhhccCCccchhhHHhhhhhhhhhhhhh
Q 045616 301 ELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDKNWTGKGEQDHLILHISESWLDERMQMK 380 (671)
Q Consensus 301 ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k~~~ee~eeER~MLqmAEvWREERVQMK 380 (671)
||.|.+--+-=..+=|+.|+-.-.-|-+--.---++|+-..||+..+.|+-+|..- .--|.=+|-..--.|=| |
T Consensus 26 eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~---~Lkrn~~qQnQQSlDiR---K 99 (167)
T 4gkw_A 26 QLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQ---LLKRNSQQQNQQSLDMR---K 99 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHH---HHHhhhHHHhHhhhhHH---H
Confidence 33344444444444444454433333333333456777788888887777665441 22233333332222222 6
Q ss_pred HHHhhhcccchhhHHHHhhH
Q 045616 381 LEEAQYGLSEKNSIVDKLGF 400 (671)
Q Consensus 381 L~eAk~~leeK~s~vdkL~~ 400 (671)
|-+-..+|-||-+.|+-|-.
T Consensus 100 LrELEADLKEKDsMVe~LT~ 119 (167)
T 4gkw_A 100 LGELEADLKEKDSMVESLTE 119 (167)
T ss_dssp THHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHhHHhhhhHHHHHHHH
Confidence 77778888999999887644
No 71
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.07 E-value=2.5e+02 Score=31.70 Aligned_cols=107 Identities=11% Similarity=0.156 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHH
Q 045616 265 KEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQEL 344 (671)
Q Consensus 265 KE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEV 344 (671)
|...-+...|..|+.+|++=.+.++-++..-+-+..+| .+.+..-.--...+-++-+||-+.|...|.+|
T Consensus 57 kqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~L----------r~rq~q~~dNdNtynE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 57 EVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEIL----------RGDFSSANNRDNTYNRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT----------SSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH----------HHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhchhhhccCCccchhhHHhhhhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHhhhc
Q 045616 345 HALKQKSDKNWTGKGEQDHLILHISESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQAKRM 411 (671)
Q Consensus 345 e~LKres~k~~~ee~eeER~MLqmAEvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~k~~ 411 (671)
.... ...+++ +..|++=...|.||..+|.+=|++.++
T Consensus 127 dnQl-snIrvL-----------------------------QsnLedq~~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 127 IEKV-QHIQLL-----------------------------QKNVRAQLVDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHH-HHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHH-HHHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHhccc
No 72
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=23.04 E-value=7.9e+02 Score=27.51 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=36.4
Q ss_pred hhHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 045616 245 RHEMDDLMKQIAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRK 324 (671)
Q Consensus 245 ~~eie~l~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRe 324 (671)
+.+++.-+.+++.|. .+.|+.+|+..-++.+.| ++.||-..+..++.++.+++.+.+......+
T Consensus 598 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 661 (695)
T 2j69_A 598 KKELVKHLPQVAHEQ-------SQVVYNAVKECFDSYERE---------VSKRINDDIVSRKSELDNLVKQKQTREINRE 661 (695)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 344555555555443 334444444444433332 4556666666666666666666665544444
Q ss_pred HHHHHHHH
Q 045616 325 LLEELCDE 332 (671)
Q Consensus 325 llE~vCDE 332 (671)
..-+-++-
T Consensus 662 ~~~~~l~~ 669 (695)
T 2j69_A 662 SEFNRLKN 669 (695)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33333333
No 73
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=21.78 E-value=2.6e+02 Score=24.26 Aligned_cols=26 Identities=15% Similarity=0.113 Sum_probs=19.3
Q ss_pred HHHHHhhccccHHHHHHHhhhchhhh
Q 045616 330 CDEFAIGIKDYDQELHALKQKSDKNW 355 (671)
Q Consensus 330 CDELAkgI~edkaEVe~LKres~k~~ 355 (671)
..+++.+|...++|.+.|..+-.+-|
T Consensus 34 ~~~l~~el~~le~E~~~L~~eE~~~w 59 (96)
T 3q8t_A 34 RKVVAENLEKVQAEAERLDQEEAQYQ 59 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 35678888888888888877765555
No 74
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.75 E-value=2.6e+02 Score=24.18 Aligned_cols=51 Identities=18% Similarity=0.291 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHhHHHHHHhhhh
Q 045616 215 SNVSLIKALKTELDHARVKIKELLRDQQADRH---EMDDLMKQIAEDKLIRKSK 265 (671)
Q Consensus 215 s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~---eie~l~KqlaEEK~awKsK 265 (671)
..|-.|.-|++|++.-+..-..|.++.+..+. .++.=..++.+|...|..+
T Consensus 17 ~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 17 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777666666666555433 3445567788999999664
No 75
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=21.71 E-value=4.7e+02 Score=24.00 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 276 SVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGE 319 (671)
Q Consensus 276 slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~E 319 (671)
-|+.|+|.| +|.+.+|.-.-|-|+.+++.+-.++++.-
T Consensus 61 qLkse~e~E------~ae~k~KYD~~lqe~ese~~~kkK~le~~ 98 (115)
T 3vem_A 61 ILKAELERK------MAEVQAEFRRKFHEVEAEHNTRTTKIEKD 98 (115)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666655 88888888888888888888887777754
No 76
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=21.64 E-value=2.3e+02 Score=25.19 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=42.8
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 045616 255 IAEDKLIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFA 334 (671)
Q Consensus 255 laEEK~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELA 334 (671)
.+||.++-|..+-++++..+.-.+..++.=--+ |.-+.=+-.|.+.||.+|+-| +
T Consensus 13 ~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vL------------------k~Qv~IY~~DF~aERadREkl-------~ 67 (94)
T 3jsv_C 13 QAEEALVAKQELIDKLKEEAEQHKIVMETVPVL------------------KAQADIYKADFQAERHAREKL-------V 67 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH-------H
Confidence 356666666555555555444444333221111 333344567889999999854 5
Q ss_pred hhccccHHHHHHHhhhchh
Q 045616 335 IGIKDYDQELHALKQKSDK 353 (671)
Q Consensus 335 kgI~edkaEVe~LKres~k 353 (671)
.++.++...++.|.++..+
T Consensus 68 ~eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 68 EKKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp HTTSHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5666777777777776543
No 77
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.30 E-value=4.8e+02 Score=23.97 Aligned_cols=45 Identities=18% Similarity=0.132 Sum_probs=32.3
Q ss_pred cccHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHH
Q 045616 214 ASNVSLIKAL--KTELDHARVKIKELLRDQQADRHEMDDLMKQIAED 258 (671)
Q Consensus 214 ~s~~Slv~aL--k~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEE 258 (671)
...++++.|| --||-.++..+.+|.++-....+++..|-..+..-
T Consensus 55 ~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~ 101 (138)
T 3hnw_A 55 AELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAA 101 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666664 46888888888888888777777777776666544
No 78
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=21.11 E-value=3.8e+02 Score=22.72 Aligned_cols=64 Identities=16% Similarity=0.262 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHH
Q 045616 270 IHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHAL 347 (671)
Q Consensus 270 i~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~L 347 (671)
...-+..+++.|+.+-+.|+.+|.-+.+|..|-.+.... -.=+|+.|+.|...-.+.+..|..|
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q--------------l~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS--------------MKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788999999999999999999999888765544 2334667777776665666666555
No 79
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=20.93 E-value=9.1e+02 Score=27.02 Aligned_cols=51 Identities=8% Similarity=0.066 Sum_probs=31.5
Q ss_pred ccchhhHHhhhhhh---hhhhhhhHHHhhhcccchh-hHHHHhhHHHHHHHHhhh
Q 045616 360 EQDHLILHISESWL---DERMQMKLEEAQYGLSEKN-SIVDKLGFEIEAYLQAKR 410 (671)
Q Consensus 360 eeER~MLqmAEvWR---EERVQMKL~eAk~~leeK~-s~vdkL~~elEaFL~~k~ 410 (671)
+-++..-||+.-.. ..||.--+..-+..+++|. ..++..+.+|+.-+.-|+
T Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 654 (695)
T 2j69_A 600 ELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQ 654 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666663333 4566665666666666664 566777777777766665
No 80
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=20.64 E-value=6.7e+02 Score=25.33 Aligned_cols=67 Identities=21% Similarity=0.217 Sum_probs=34.4
Q ss_pred ccccccccccc-chHHHHHHHHHhhcccccC---cccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHH
Q 045616 184 GRVGESRYNLK-TSTELLKVLNRIWSLEEQH---ASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAED 258 (671)
Q Consensus 184 ~R~~e~~~~L~-TS~ELlkVLnrIW~leeq~---~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEE 258 (671)
.++.+...+.. +|+||-.+|-+|.. -+. ..--..+++|..|| |..|++--...++.|..+-|.++-+
T Consensus 62 qKvad~A~~s~g~s~elG~~L~~i~~--~hr~ie~~l~~~~k~~~~el------i~pLe~k~e~d~k~~~~~~K~~~~~ 132 (253)
T 2d1l_A 62 QKVADMATNTRGGTREIGSALTRMCM--RHRSIEAKLRQFSSALIDCL------INPLQEQMEEWKKVANQLDKDHAKE 132 (253)
T ss_dssp HHHHHHHHTSSTHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccCCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455444444 68999999999941 110 11113344444444 3444444444555555555555444
No 81
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=20.31 E-value=7.9e+02 Score=26.05 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHH
Q 045616 222 ALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAE 257 (671)
Q Consensus 222 aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaE 257 (671)
..-.++.++..+.+.|..+......+++.+-.|+.|
T Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~e 218 (517)
T 4ad8_A 183 AAHAAWREAVSRLERLQASQRERARQIDLLAFQVQE 218 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333445555555555555544444455555555543
No 82
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.01 E-value=7.4e+02 Score=25.63 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045616 293 SLHRKLARELSEVKSTLSN 311 (671)
Q Consensus 293 ~ln~KL~~ELsE~Kss~~~ 311 (671)
..++=|-+.|.+++..|.+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~ 415 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQD 415 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHH
Confidence 3333344444444444443
Done!