Query 045616
Match_columns 671
No_of_seqs 104 out of 116
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 06:07:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045616.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045616hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efla1 a.238.1.4 (A:1-288) Fo 69.7 35 0.0026 29.9 17.2 80 274-353 99-178 (288)
2 d1gs9a_ a.24.1.1 (A:) Apolipop 67.0 15 0.0011 31.1 9.5 31 286-316 71-101 (144)
3 d2efka1 a.238.1.4 (A:10-288) C 64.0 45 0.0033 29.1 16.4 202 191-408 11-231 (279)
4 d2efla1 a.238.1.4 (A:1-288) Fo 52.3 72 0.0053 27.7 15.0 13 399-411 262-274 (288)
5 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 36.7 23 0.0017 27.8 4.9 39 220-258 28-66 (67)
6 d1y2oa1 a.238.1.3 (A:1-248) BA 23.3 1.7E+02 0.012 25.6 9.3 15 320-334 192-206 (248)
7 d1j1ja_ a.118.16.1 (A:) Transl 23.0 2.2E+02 0.016 25.1 10.0 42 270-311 3-44 (217)
8 d1gs9a_ a.24.1.1 (A:) Apolipop 20.0 1.1E+02 0.008 25.3 6.8 29 288-316 95-123 (144)
9 d1fxka_ a.2.5.1 (A:) Prefoldin 20.0 80 0.0058 25.3 5.6 40 218-258 8-47 (107)
10 d2p90a1 c.56.8.1 (A:6-274) Hyp 17.8 1.4E+02 0.01 27.0 7.5 58 194-258 207-264 (269)
No 1
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.74 E-value=35 Score=29.91 Aligned_cols=80 Identities=11% Similarity=0.182 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHhhhchh
Q 045616 274 VQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKDYDQELHALKQKSDK 353 (671)
Q Consensus 274 i~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKres~k 353 (671)
++.+..-+.+-++.||.+...-.|+.+++......+.++.+.|..--+.-+-+...+........--+.+++.++....+
T Consensus 99 ~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~k~~~ 178 (288)
T d2efla1 99 IVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQI 178 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHH
Confidence 44455555666777788888888888888888888888888886655444444444444545555556666666655443
No 2
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=67.04 E-value=15 Score=31.13 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=19.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 286 KLRKRSESLHRKLARELSEVKSTLSNALREL 316 (671)
Q Consensus 286 k~Rrr~E~ln~KL~~ELsE~Kss~~~alkel 316 (671)
++.+.++.|-.+|..+|.|++.-+...+.++
T Consensus 71 ~l~~~~e~lr~~l~~~lee~r~kl~~~~eel 101 (144)
T d1gs9a_ 71 RLSKELQAAQARLGADMEDVRGRLVQYRGEV 101 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677777777777777666655554444
No 3
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.99 E-value=45 Score=29.08 Aligned_cols=202 Identities=10% Similarity=0.087 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHHhhcccccCcccHHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHH
Q 045616 191 YNLKTSTELLKVLNRIWSLEEQHASNVSLI-----------KALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAEDK 259 (671)
Q Consensus 191 ~~L~TS~ELlkVLnrIW~leeq~~s~~Slv-----------~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEEK 259 (671)
++++..+++.+.+..-=.+|+..+..+.-+ .....+.-...+ ...++.+-...-.....+..+|..+
T Consensus 11 ~g~~~~~~~~~~~~eRa~iE~~Yak~L~kL~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~a~~~~~~~~~l~~~- 88 (279)
T d2efka1 11 WGLDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQS-FVQILQEVNDFAGQRELVAENLSVR- 88 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CTTSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Q 045616 260 LIRKSKEQDRIHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSNALRELEGERRSRKLLEELCDEFAIGIKD 339 (671)
Q Consensus 260 ~awKsKE~eki~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~alkelE~ERKaRellE~vCDELAkgI~e 339 (671)
+++.|..-+..-++.|+....--.++.++|.+....+.++.+.|..-.+.-+-+......+.....-
T Consensus 89 -------------i~~~l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~~~~~~ 155 (279)
T d2efka1 89 -------------VCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINA 155 (279)
T ss_dssp -------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q ss_pred cHHHHHHHhhhchhhhccCCccchhhHHhh--------hhhhhhhhhhhHHHhhhcccchhhHHHHhhHHHHHHHHh
Q 045616 340 YDQELHALKQKSDKNWTGKGEQDHLILHIS--------ESWLDERMQMKLEEAQYGLSEKNSIVDKLGFEIEAYLQA 408 (671)
Q Consensus 340 dkaEVe~LKres~k~~~ee~eeER~MLqmA--------EvWREERVQMKL~eAk~~leeK~s~vdkL~~elEaFL~~ 408 (671)
-+.++..++.+..+.. ..++.-+.-+..+ +.|.++-|--=|..-+...++.+..+...-..+-.+...
T Consensus 156 ~~~~~~K~~~~~~~~~-~~~~~~~~~y~~~l~~~n~~~~~~~~~~~p~~l~~lq~~e~~r~~~lk~~l~~~~~~~~~ 231 (279)
T d2efka1 156 TKADVEKAKQQAHLRS-HMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELE 231 (279)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 4
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.30 E-value=72 Score=27.74 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=8.6
Q ss_pred hHHHHHHHHhhhc
Q 045616 399 GFEIEAYLQAKRM 411 (671)
Q Consensus 399 ~~elEaFL~~k~~ 411 (671)
..|++.|+...+.
T Consensus 262 ~~D~~~fi~~~~t 274 (288)
T d2efla1 262 KNDSQLVIEAYKS 274 (288)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC
Confidence 5567777776653
No 5
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.66 E-value=23 Score=27.78 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHH
Q 045616 220 IKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAED 258 (671)
Q Consensus 220 v~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEE 258 (671)
|-.+..||++.++.|+.|+++--..+-.+-+|---||-|
T Consensus 28 V~diE~eLerCk~~irrLeqel~~ErF~~iYLQt~LA~e 66 (67)
T d1k1fa_ 28 VGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKE 66 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 788999999999999999999666665566665555433
No 6
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.33 E-value=1.7e+02 Score=25.58 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=7.7
Q ss_pred HhhHHHHHHHHHHHH
Q 045616 320 RRSRKLLEELCDEFA 334 (671)
Q Consensus 320 RKaRellE~vCDELA 334 (671)
+|-..+++.+|.=+-
T Consensus 192 kr~~~lv~~l~~~~~ 206 (248)
T d1y2oa1 192 RRFCFLVEKQCAVAK 206 (248)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333345677775443
No 7
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.04 E-value=2.2e+02 Score=25.12 Aligned_cols=42 Identities=14% Similarity=0.258 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 045616 270 IHAAVQSVRDELEDERKLRKRSESLHRKLARELSEVKSTLSN 311 (671)
Q Consensus 270 i~aai~slk~ELe~ERk~Rrr~E~ln~KL~~ELsE~Kss~~~ 311 (671)
|.++..+++++|+.+-..|.++-.+-|.+.+.-..+-.++.+
T Consensus 3 ~~~~F~~~~~~Ld~~~d~RE~lik~sRdI~~~sk~~I~~Lhr 44 (217)
T d1j1ja_ 3 VSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQG 44 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999998888888777776666655
No 8
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=20.03 E-value=1.1e+02 Score=25.35 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045616 288 RKRSESLHRKLARELSEVKSTLSNALREL 316 (671)
Q Consensus 288 Rrr~E~ln~KL~~ELsE~Kss~~~alkel 316 (671)
-.+++.+..++...+.+++..+.-.+.+|
T Consensus 95 ~~~~eel~~~~~~~~ee~r~~l~p~~eel 123 (144)
T d1gs9a_ 95 VQYRGEVQAMLGQSTEELRVRLASHLRKL 123 (144)
T ss_dssp HHHHHHHHTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554444444444
No 9
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.01 E-value=80 Score=25.27 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHH
Q 045616 218 SLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAED 258 (671)
Q Consensus 218 Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEE 258 (671)
.-+..|+.||+....++.+|..+.+-...-++.| ..+.++
T Consensus 8 ~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL-~~l~~d 47 (107)
T d1fxka_ 8 AQFQQLQQQAQAISVQKQTVEMQINETQKALEEL-SRAADD 47 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcc
Confidence 3467889999999999999999886555544443 334444
No 10
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=17.79 E-value=1.4e+02 Score=27.02 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHH
Q 045616 194 KTSTELLKVLNRIWSLEEQHASNVSLIKALKTELDHARVKIKELLRDQQADRHEMDDLMKQIAED 258 (671)
Q Consensus 194 ~TS~ELlkVLnrIW~leeq~~s~~Slv~aLk~EL~~Ar~~I~eL~~E~~s~~~eie~l~KqlaEE 258 (671)
+++..||++|+.|.+++=.. +.|..+-+..+.+|++|+++-....+-|+.|-+++-+.
T Consensus 207 ~AA~~lL~~l~~~~gl~id~-------~~L~e~Ae~~e~~i~~l~e~~~e~~~~v~~LE~~yD~~ 264 (269)
T d2p90a1 207 AATLKLLQSIADSADLNLPL-------LALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDSE 264 (269)
T ss_dssp HHHHHHHHHHHHHHTCCCCC-------HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCh-------HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhHhhh
Done!