BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>045617
MALIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRK
WDGHVYAQNRVVVLREVLDHLDYDETVDQLKNTGSKL

High Scoring Gene Products

Symbol, full name Information P value
ECI1
AT1G65520
protein from Arabidopsis thaliana 4.9e-21
HCD1
AT4G14440
protein from Arabidopsis thaliana 1.6e-13
IBR10
AT4G14430
protein from Arabidopsis thaliana 2.1e-13

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045617
        (97 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2034178 - symbol:ECI1 ""delta(3), delta(2)-eno...   247  4.9e-21   1
TAIR|locus:2129740 - symbol:HCD1 "3-hydroxyacyl-CoA dehyd...   176  1.6e-13   1
TAIR|locus:2129730 - symbol:IBR10 "indole-3-butyric acid ...   175  2.1e-13   1


>TAIR|locus:2034178 [details] [associations]
            symbol:ECI1 ""delta(3), delta(2)-enoyl CoA isomerase 1""
            species:3702 "Arabidopsis thaliana" [GO:0003824 "catalytic
            activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0008152 "metabolic process" evidence=IEA;ISS] [GO:0008809
            "carnitine racemase activity" evidence=ISS] [GO:0005777
            "peroxisome" evidence=IDA] [GO:0004165 "dodecenoyl-CoA
            delta-isomerase activity" evidence=IGI] [GO:0009062 "fatty acid
            catabolic process" evidence=IMP] [GO:0006635 "fatty acid
            beta-oxidation" evidence=RCA] [GO:0015824 "proline transport"
            evidence=RCA] InterPro:IPR001753 Pfam:PF00378 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005777 GO:GO:0004165
            eggNOG:COG1024 GO:GO:0009062 EMBL:AC001229 EMBL:BT010695
            EMBL:BT012425 IPI:IPI00520660 PIR:A96680 RefSeq:NP_176730.1
            UniGene:At.35874 ProteinModelPortal:O04469 SMR:O04469 PaxDb:O04469
            PRIDE:O04469 EnsemblPlants:AT1G65520.1 GeneID:842864
            KEGG:ath:AT1G65520 TAIR:At1g65520 HOGENOM:HOG000080529
            InParanoid:O04469 OMA:CILAMSH PhylomeDB:O04469 ProtClustDB:PLN02267
            BioCyc:MetaCyc:AT1G65520-MONOMER Genevestigator:O04469
            Uniprot:O04469
        Length = 240

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 52/99 (52%), Positives = 72/99 (72%)

Query:     1 MALIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRK 60
             MA+I  K+G+P ARR+++L AAK+ A   V+ GI+D+AY SA ETV+AA+KLGEE+V R 
Sbjct:   142 MAVIRGKIGSPAARRDVMLTAAKVTADVGVKMGIVDSAYGSAAETVEAAIKLGEEIVQRG 201

Query:    61 WDGHVYAQNRVVVLREVLDHL--DYDETVDQLKNTGSKL 97
              DGHVY + R  +LREVL H   +Y+     +++TGSKL
Sbjct:   202 GDGHVYGKMRESLLREVLIHTIGEYESGSSVVRSTGSKL 240


>TAIR|locus:2129740 [details] [associations]
            symbol:HCD1 "3-hydroxyacyl-CoA dehydratase 1"
            species:3702 "Arabidopsis thaliana" [GO:0003824 "catalytic
            activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0008152 "metabolic process" evidence=IEA;ISS] [GO:0008809
            "carnitine racemase activity" evidence=ISS] [GO:0004165
            "dodecenoyl-CoA delta-isomerase activity" evidence=IGI;IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005777 "peroxisome"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009062
            "fatty acid catabolic process" evidence=IMP] [GO:0080167 "response
            to karrikin" evidence=IEP] InterPro:IPR001753 Pfam:PF00378
            GO:GO:0005829 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0080167 GO:GO:0004165 EMBL:Z97336 EMBL:AL161539 GO:GO:0009062
            OMA:DWIDATH HOGENOM:HOG000080529 ProtClustDB:PLN02267
            eggNOG:NOG248067 EMBL:AY072398 EMBL:BT006275 IPI:IPI00541508
            PIR:E71406 RefSeq:NP_193180.1 UniGene:At.27640
            ProteinModelPortal:O23300 SMR:O23300 IntAct:O23300 STRING:O23300
            PaxDb:O23300 PRIDE:O23300 EnsemblPlants:AT4G14440.1 GeneID:827089
            KEGG:ath:AT4G14440 TAIR:At4g14440 InParanoid:O23300
            PhylomeDB:O23300 BioCyc:MetaCyc:AT4G14440-MONOMER
            Genevestigator:O23300 Uniprot:O23300
        Length = 238

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 40/82 (48%), Positives = 53/82 (64%)

Query:     2 ALIECKVGNPTARREMVLKAAKLMAKEAVERGIID-AAYDSAEETVKAAVKLGEELVNRK 60
             AL+  KVG+  ARRE++L   KL  +EAV  GI+D AA+DSAE  V+A V LGE L  +K
Sbjct:   146 ALVVAKVGSGIARRELLLSGKKLKGEEAVALGIVDSAAHDSAEGVVEATVSLGESLAAKK 205

Query:    61 WDGHVYAQNRVVVLREVLDHLD 82
             W+G VYA  R  +  E+   +D
Sbjct:   206 WNGEVYATIRKSLYPELCRMVD 227


>TAIR|locus:2129730 [details] [associations]
            symbol:IBR10 "indole-3-butyric acid response 10"
            species:3702 "Arabidopsis thaliana" [GO:0003824 "catalytic
            activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0008152 "metabolic process" evidence=IEA;ISS] [GO:0005777
            "peroxisome" evidence=IDA] [GO:0004165 "dodecenoyl-CoA
            delta-isomerase activity" evidence=IGI;IDA] [GO:0009062 "fatty acid
            catabolic process" evidence=RCA;IMP] [GO:0080024 "indolebutyric
            acid metabolic process" evidence=IMP] [GO:0080026 "response to
            indolebutyric acid stimulus" evidence=IMP] [GO:0048767 "root hair
            elongation" evidence=IMP] [GO:0006635 "fatty acid beta-oxidation"
            evidence=RCA] [GO:0007165 "signal transduction" evidence=RCA]
            [GO:0009407 "toxin catabolic process" evidence=RCA] [GO:0009414
            "response to water deprivation" evidence=RCA] [GO:0009723 "response
            to ethylene stimulus" evidence=RCA] [GO:0009733 "response to auxin
            stimulus" evidence=RCA] [GO:0009738 "abscisic acid mediated
            signaling pathway" evidence=RCA] [GO:0009753 "response to jasmonic
            acid stimulus" evidence=RCA] [GO:0042538 "hyperosmotic salinity
            response" evidence=RCA] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=RCA]
            [GO:0051788 "response to misfolded protein" evidence=RCA]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA]
            InterPro:IPR001753 Pfam:PF00378 EMBL:CP002687
            GenomeReviews:CT486007_GR GO:GO:0005777 GO:GO:0048767 GO:GO:0004165
            EMBL:Z97336 EMBL:AL161539 GO:GO:0009062 GO:GO:0080026 GO:GO:0080024
            HOGENOM:HOG000080529 ProtClustDB:PLN02267 EMBL:AF380640
            EMBL:AY056091 EMBL:AK229431 IPI:IPI00538164 PIR:D71406
            RefSeq:NP_193179.1 UniGene:At.25366 ProteinModelPortal:O23299
            SMR:O23299 IntAct:O23299 STRING:O23299 PaxDb:O23299 PRIDE:O23299
            ProMEX:O23299 EnsemblPlants:AT4G14430.1 GeneID:827088
            KEGG:ath:AT4G14430 TAIR:At4g14430 eggNOG:NOG248067
            InParanoid:O23299 OMA:MCTLEQR PhylomeDB:O23299
            BioCyc:ARA:AT4G14430-MONOMER BioCyc:MetaCyc:AT4G14430-MONOMER
            ArrayExpress:O23299 Genevestigator:O23299 Uniprot:O23299
        Length = 240

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 39/87 (44%), Positives = 53/87 (60%)

Query:     2 ALIECKVGNPTARREMVLKAAKLMAKEAVERGIID-AAYDSAEETVKAAVKLGEELVNRK 60
             AL+  K+G   ARRE++L   K+  +EAV  GI+D AAYDS E  V A+V+LGE+L  +K
Sbjct:   148 ALVRAKIGTSAARRELLLSGKKIRGEEAVGLGIVDSAAYDSEEGVVVASVRLGEKLAAKK 207

Query:    61 WDGHVYAQNRVVVLREVLDHLDYDETV 87
             W G VYA  R  +  E+   L  +  V
Sbjct:   208 WSGEVYASIRKSLYPELCGILGLETRV 234


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.358    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       97        97   0.00091  102 3  11 23  0.40    30
                                                     29  0.44    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  532 (57 KB)
  Total size of DFA:  103 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.61u 0.14s 10.75t   Elapsed:  00:00:00
  Total cpu time:  10.61u 0.14s 10.75t   Elapsed:  00:00:00
  Start:  Tue May 21 02:44:26 2013   End:  Tue May 21 02:44:26 2013

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