BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045617
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase
pdb|1DCI|B Chain B, Dienoyl-Coa Isomerase
pdb|1DCI|C Chain C, Dienoyl-Coa Isomerase
Length = 275
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 8 VGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYA 67
+GN + E+ A K+MA EA++ G++ + + + AA L ++ ++ V
Sbjct: 163 IGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSK---SPVAV 219
Query: 68 QNRVVVLREVLDHLDYDETVDQL 90
Q + L DH DE++D +
Sbjct: 220 QGSKINLIYSRDH-SVDESLDYM 241
>pdb|1QQI|A Chain A, Solution Structure Of The Dna-Binding And Transactivation
Domain Of Phob From Escherichia Coli
pdb|2Z33|A Chain A, Solution Structure Of The Dna Complex Of Phob Dna-
BindingTRANSACTIVATION DOMAIN
Length = 104
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 10 NPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQN 69
+PT+ R M +E +E G + T V E+L+N W +VY ++
Sbjct: 15 DPTSHRVMA-------GEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVED 67
Query: 70 RVV-----VLREVLDHLDYDETVDQLKNTGSKL 97
R V LR+ L+ +D V ++ TG +
Sbjct: 68 RTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 100
>pdb|1GXP|A Chain A, Phob Effector Domain In Complex With Pho Box Dna.
pdb|1GXP|B Chain B, Phob Effector Domain In Complex With Pho Box Dna.
pdb|1GXP|E Chain E, Phob Effector Domain In Complex With Pho Box Dna.
pdb|1GXP|F Chain F, Phob Effector Domain In Complex With Pho Box Dna.
pdb|1GXQ|A Chain A, Crystal Structure Of The Phob Effector Domain
Length = 106
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 10 NPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQN 69
+PT+ R M +E +E G + T V E+L+N W +VY ++
Sbjct: 17 DPTSHRVMA-------GEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVED 69
Query: 70 RVV-----VLREVLDHLDYDETVDQLKNTGSKL 97
R V LR+ L+ +D V ++ TG +
Sbjct: 70 RTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 102
>pdb|3T72|A Chain A, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|B Chain B, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|E Chain E, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|F Chain F, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|I Chain I, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|J Chain J, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|M Chain M, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|N Chain N, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|R Chain R, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|S Chain S, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|V Chain V, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|W Chain W, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|Z Chain Z, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|1 Chain 1, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|4 Chain 4, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|5 Chain 5, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|8 Chain 8, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|9 Chain 9, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|CC Chain c, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|DD Chain d, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|GG Chain g, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|HH Chain h, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|KK Chain k, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
pdb|3T72|LL Chain l, Phob(E)-Sigma70(4)-(Rnap-Betha-Flap-Tip-Helix)-Dna
Transcription Activation Sub-Complex
Length = 102
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 10 NPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQN 69
+PT+ R M +E +E G + T V E+L+N W +VY ++
Sbjct: 13 DPTSHRVMA-------GEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVED 65
Query: 70 RVV-----VLREVLDHLDYDETVDQLKNTGSKL 97
R V LR+ L+ +D V ++ TG +
Sbjct: 66 RTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 98
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
pdb|1VDK|B Chain B, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
Length = 466
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 2 ALIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKW 61
+L ++G R + + A M K+A R ++ + EE KA ++ EE+V KW
Sbjct: 28 SLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELG-ELPEEIAKAIIQAAEEVVQGKW 86
Query: 62 DGHV 65
D H
Sbjct: 87 DDHF 90
>pdb|2J4C|A Chain A, Structure Of Human Butyrylcholinesterase In Complex With
10mm Hgcl2
Length = 529
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAA 49
IE G P RR+ KA +++++ V+R A Y + +ET A+
Sbjct: 442 IEFVFGLPLERRDQYTKAEEILSRSIVKRWANFAKYGNPQETQNAS 487
>pdb|1P0I|A Chain A, Crystal Structure Of Human Butyryl Cholinesterase
pdb|1P0M|A Chain A, Crystal Structure Of Human Butyryl Cholinesterase In
Complex With A Choline Molecule
pdb|1P0P|A Chain A, Crystal Structure Of Soman-Aged Human Butyryl
Cholinesterase In Complex With The Substrate Analog
Butyrylthiocholine
pdb|1P0Q|A Chain A, Crystal Structure Of Soman-Aged Human Butyryl
Cholinesterase
Length = 529
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEET 45
IE G P RR+ KA +++++ V+R A Y + +ET
Sbjct: 442 IEFVFGLPLERRDQYTKAEEILSRSIVKRWANFAKYGNPQET 483
>pdb|4B0O|A Chain A, Crystal Structure Of Soman-Aged Human
Butyrylcholinesterase In Complex With Benzyl
Pyridinium-4-Methyltrichloroacetimidate
pdb|4B0P|A Chain A, Crystal Structure Of Soman-Aged Human
Butyrylcholinesterase In Complex With Methyl
2-(Pentafluorobenzyloxyimino) Pyridinium
Length = 529
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEET 45
IE G P RR+ KA +++++ V+R A Y + +ET
Sbjct: 442 IEFVFGLPLERRDQYTKAEEILSRSIVKRWANFAKYGNPQET 483
>pdb|4AXB|A Chain A, Crystal Structure Of Soman-aged Human
Butyrylcholinesterase In Complex With 2-pam
Length = 527
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEET 45
IE G P RR+ KA +++++ V+R A Y + +ET
Sbjct: 440 IEFVFGLPLERRDQYTKAEEILSRSIVKRWANFAKYGNPQET 481
>pdb|2Y1K|A Chain A, Structure Of Human Butyrylcholinesterase Inhibited By Cbdp
( 12h Soak): Phosphoserine Adduct
Length = 529
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEET 45
IE G P RR+ KA +++++ V+R A Y + +ET
Sbjct: 442 IEFVFGLPLERRDQYTKAEEILSRSIVKRWANFAKYGNPQET 483
>pdb|2XQF|A Chain A, X-Ray Structure Of Human Butyrylcholinesterase Inhibited
By Racemic Vx
pdb|2XQG|A Chain A, X-Ray Structure Of Human Butyrylcholinesterase Inhibited
By Racemic Vr
pdb|2XQI|A Chain A, X-Ray Structure Of Human Butyrylcholinesterase Inhibited
By Racemic Cvx
pdb|2XQJ|A Chain A, X-Ray Structure Of Human Butyrylcholinesterase Inhibited
By Pure Enantiomer Vx-(R)
pdb|2XQK|A Chain A, X-Ray Structure Of Human Butyrylcholinesterase Inhibited
By Pure Enantiomer Vx-(S)
Length = 527
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEET 45
IE G P RR+ KA +++++ V+R A Y + +ET
Sbjct: 440 IEFVFGLPLERRDQYTKAEEILSRSIVKRWANFAKYGNPQET 481
>pdb|2XMB|A Chain A, G117h Mutant Of Human Butyrylcholinesterase In Complex
With Sulfate
pdb|2XMC|A Chain A, G117h Mutant Of Human Butyrylcholinesterase In Complex
With Fluoride Anion
pdb|2XMD|A Chain A, G117h Mutant Of Human Butyrylcholinesterase In Complex
With Echothiophate
pdb|2XMG|A Chain A, G117h Mutant Of Human Butyrylcholinesterase In Complex
With Vx
Length = 529
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEET 45
IE G P RR+ KA +++++ V+R A Y + +ET
Sbjct: 442 IEFVFGLPLERRDQYTKAEEILSRSIVKRWANFAKYGNPQET 483
>pdb|2WSL|A Chain A, Aged Form Of Human Butyrylcholinesterase Inhibited By
Tabun Analogue Ta4
pdb|1XLU|A Chain A, X-Ray Structure Of Di-Isopropyl-Phosphoro-Fluoridate (Dfp)
Inhibited Butyrylcholinesterase After Aging
pdb|1XLV|A Chain A, Ethylphosphorylated Butyrylcholinesterase (Aged) Obtained
By Reaction With Echothiophate
pdb|1XLW|A Chain A, Diethylphosphorylated Butyrylcholinesterase (Nonaged)
Obtained By Reaction With Echothiophate
Length = 529
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEET 45
IE G P RR+ KA +++++ V+R A Y + +ET
Sbjct: 442 IEFVFGLPLERRDQYTKAEEILSRSIVKRWANFAKYGNPQET 483
>pdb|2WIF|A Chain A, Aged Form Of Human Butyrylcholinesterase Inhibited By
Tabun Analogue Ta1
pdb|2WIJ|A Chain A, Nonaged Form Of Human Butyrylcholinesterase Inhibited By
Tabun Analogue Ta5
pdb|2WIK|A Chain A, Nonaged Form Of Human Butyrylcholinesterase Inhibited By
Tabun Analogue Ta6
pdb|4BBZ|A Chain A, Structure Of Human Butyrylcholinesterase Inhibited By Cbdp
( 2-min Soak): Cresyl-phosphoserine Adduct
Length = 529
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEET 45
IE G P RR+ KA +++++ V+R A Y + +ET
Sbjct: 442 IEFVFGLPLERRDQYTKAEEILSRSIVKRWANFAKYGNPQET 483
>pdb|2WID|A Chain A, Nonaged Form Of Human Butyrylcholinesterase Inhibited By
Tabun Analogue Ta1
pdb|2WIG|A Chain A, Nonaged Form Of Human Butyrylcholinesterase Inhibited By
Tabun Analogue Ta4
Length = 529
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEET 45
IE G P RR+ KA +++++ V+R A Y + +ET
Sbjct: 442 IEFVFGLPLERRDQYTKAEEILSRSIVKRWANFAKYGNPQET 483
>pdb|3DJY|A Chain A, Nonaged Form Of Human Butyrylcholinesterase Inhibited By
Tabun
pdb|3DKK|A Chain A, Aged Form Of Human Butyrylcholinesterase Inhibited By
Tabun
Length = 529
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEET 45
IE G P RR+ KA +++++ V+R A Y + +ET
Sbjct: 442 IEFVFGLPLERRDQYTKAEEILSRSIVKRWANFAKYGNPQET 483
>pdb|2PM8|A Chain A, Crystal Structure Of Recombinant Full Length Human
Butyrylcholinesterase
pdb|2PM8|B Chain B, Crystal Structure Of Recombinant Full Length Human
Butyrylcholinesterase
Length = 574
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEET 45
IE G P RR+ KA +++++ V+R A Y + +ET
Sbjct: 442 IEFVFGLPLERRDQYTKAEEILSRSIVKRWANFAKYGNPQET 483
>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
pdb|2VRE|B Chain B, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
pdb|2VRE|C Chain C, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
Length = 296
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 8 VGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAE 43
+GN + E+ A K+MA EA+ G++ + E
Sbjct: 190 IGNQSLVNELAFTARKMMADEALGSGLVSRVFPDKE 225
>pdb|2WIL|A Chain A, Aged Form Of Human Butyrylcholinesterase Inhibited By
Tabun Analogue Ta5
pdb|2WIL|B Chain B, Aged Form Of Human Butyrylcholinesterase Inhibited By
Tabun Analogue Ta5
Length = 529
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEET 45
IE G P RR+ KA +++++ V+R A Y + +ET
Sbjct: 442 IEFVFGLPLERRDNYTKAEEILSRSIVKRWANFAKYGNPQET 483
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 12 TARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRK--WDGHVYAQN 69
T EM+L + + A+E G+IDA A E V A + ++V R+ W V +
Sbjct: 161 TKALEMILTSKPVKAEEGHSLGLIDAVVPPA-ELVTTARRWALDIVGRRKPWVSSVSKTD 219
Query: 70 RVVVLREVLDHLDY 83
++ L E + L +
Sbjct: 220 KLPPLGEAREILTF 233
>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein
pdb|2GTR|B Chain B, Human Chromodomain Y-Like Protein
pdb|2GTR|C Chain C, Human Chromodomain Y-Like Protein
Length = 261
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 7 KVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGE 54
K+ + EM+L KL A+EA +G++ + T + V++ E
Sbjct: 155 KIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKE 202
>pdb|3E3B|X Chain X, Crystal Structure Of Catalytic Subunit Of Human Protein
Kinase Ck2alpha Prime With A Potent Indazole-Derivative
Inhibitor
Length = 339
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 59 RKWDGHVYAQNRVVVLREVLDHLD 82
++W+ ++++NR +V E LD LD
Sbjct: 285 KRWENFIHSENRHLVSPEALDLLD 308
>pdb|3OFM|A Chain A, Structure Of A Human Ck2alpha Prime, The Paralog Isoform
Of The Catalytic Subunit Of Protein Kinase Ck2 From Homo
Sapiens
Length = 350
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 59 RKWDGHVYAQNRVVVLREVLDHLD 82
++W+ ++++NR +V E LD LD
Sbjct: 280 KRWENFIHSENRHLVSPEALDLLD 303
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 33 GIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVV 73
G +D A++ E++K KLG W G+ +V V
Sbjct: 1 GAMDPAWEIPRESIKLVKKLGAGQFGEVWMGYYNNSTKVAV 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,596,767
Number of Sequences: 62578
Number of extensions: 82434
Number of successful extensions: 352
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 39
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)