BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045617
(97 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P45605|PHOB_KLEPN Phosphate regulon transcriptional regulatory protein PhoB
OS=Klebsiella pneumoniae GN=phoB PE=3 SV=1
Length = 229
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 54 EELVNRKWDGHVYAQNRVV-----VLREVLDHLDYDETVDQLKNTGSKL 97
E+L+N W +VY ++R V LR+ L+H +D V ++ TG +
Sbjct: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225
>sp|O35459|ECH1_MOUSE Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Mus
musculus GN=Ech1 PE=2 SV=1
Length = 327
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 8 VGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYA 67
+GN + E+ A K+MA EA++ G++ + + + AA L ++ ++ V
Sbjct: 215 IGNQSLVNELTFSARKMMADEALDSGLVSRVFQDKDAMLNAAFALAADISSKS---PVAV 271
Query: 68 QNRVVVLREVLDHLDYDETVDQL 90
Q + L DH DE++D +
Sbjct: 272 QGSKINLIYSRDH-SVDESLDYM 293
>sp|P45607|PHOB_SHIFL Phosphate regulon transcriptional regulatory protein PhoB
OS=Shigella flexneri GN=phoB PE=3 SV=2
Length = 229
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 10 NPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQN 69
NPT+ R M +E +E G + T V E+L+N W +VY ++
Sbjct: 140 NPTSHRVMA-------GEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVED 192
Query: 70 RVV-----VLREVLDHLDYDETVDQLKNTGSKL 97
R V LR+ L+ +D V ++ TG +
Sbjct: 193 RTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225
>sp|Q62651|ECH1_RAT Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial
OS=Rattus norvegicus GN=Ech1 PE=1 SV=2
Length = 327
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 8 VGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYA 67
+GN + E+ A K+MA EA++ G++ + + + AA L ++ ++ V
Sbjct: 215 IGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS---PVAV 271
Query: 68 QNRVVVLREVLDHLDYDETVDQL 90
Q + L DH DE++D +
Sbjct: 272 QGSKINLIYSRDH-SVDESLDYM 293
>sp|Q8IV76|PASD1_HUMAN PAS domain-containing protein 1 OS=Homo sapiens GN=PASD1 PE=2 SV=1
Length = 773
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 38 AYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLREVLDHL 81
AYD + ++ KL E+L R W H QN+ L ++DHL
Sbjct: 366 AYDIISQELELMKKLKEQLEERTWLLHDAIQNQQNALELMMDHL 409
>sp|A1K7B7|TRUB_AZOSB tRNA pseudouridine synthase B OS=Azoarcus sp. (strain BH72) GN=truB
PE=3 SV=1
Length = 300
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 42 AEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLREVLDHL--DYDETVDQLKNTGSKL 97
A++T +A VKLG DG+V A++ V V RE L+ + + +DQL S L
Sbjct: 71 ADKTYEAGVKLGTTTDTGDADGNVVAEHPVSVTREALEEVLSRFRGEIDQLPPMYSAL 128
>sp|Q66431|L_DUGBA RNA-directed RNA polymerase L OS=Dugbe virus (isolate ArD44313)
GN=L PE=3 SV=1
Length = 4036
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 5/44 (11%)
Query: 42 AEETVKAAVKLGEELVNRKWDGHV---YAQNRVVVLREVLDHLD 82
+E T + +LG +L+ R D H+ YA++++ V R+++DHLD
Sbjct: 274 SEATSISLRQLGHKLLTR--DRHIKMEYARSKLYVTRDLIDHLD 315
>sp|Q18CH4|RL18_CLOD6 50S ribosomal protein L18 OS=Clostridium difficile (strain 630)
GN=rplR PE=3 SV=1
Length = 122
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 10 NPTARREMVLKAAKLMAKEAVERGIIDAAYD 40
N T +E K +L+AK+AVE+GI + +D
Sbjct: 68 NHTGNKEAAKKVGELVAKKAVEKGITEVVFD 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,473,794
Number of Sequences: 539616
Number of extensions: 1050916
Number of successful extensions: 4859
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 4848
Number of HSP's gapped (non-prelim): 37
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)