Query 045617
Match_columns 97
No_of_seqs 110 out of 748
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:47:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02267 enoyl-CoA hydratase/i 99.7 5.6E-17 1.2E-21 119.6 9.1 93 3-97 146-239 (239)
2 PRK06213 enoyl-CoA hydratase; 99.4 5.1E-13 1.1E-17 97.5 8.2 78 3-84 143-220 (229)
3 PRK05869 enoyl-CoA hydratase; 99.4 5.1E-13 1.1E-17 97.6 7.6 69 3-75 150-218 (222)
4 TIGR03210 badI 2-ketocyclohexa 99.4 4.9E-13 1.1E-17 99.2 7.6 70 3-76 145-214 (256)
5 PRK06144 enoyl-CoA hydratase; 99.4 5.5E-13 1.2E-17 99.2 7.7 70 3-76 154-223 (262)
6 TIGR02280 PaaB1 phenylacetate 99.4 5.9E-13 1.3E-17 98.5 7.6 70 3-76 144-213 (256)
7 PRK08150 enoyl-CoA hydratase; 99.4 6E-13 1.3E-17 98.8 7.7 70 3-76 143-212 (255)
8 PLN03214 probable enoyl-CoA hy 99.4 6.4E-13 1.4E-17 100.0 7.8 70 3-76 159-228 (278)
9 PLN02888 enoyl-CoA hydratase 99.4 6.5E-13 1.4E-17 99.2 7.8 70 3-76 150-219 (265)
10 PLN02600 enoyl-CoA hydratase 99.4 6.3E-13 1.4E-17 98.4 7.6 70 3-76 139-208 (251)
11 TIGR01929 menB naphthoate synt 99.4 5.4E-13 1.2E-17 99.1 7.1 70 3-76 148-217 (259)
12 PRK07110 polyketide biosynthes 99.4 6E-13 1.3E-17 98.4 7.3 72 3-78 145-216 (249)
13 PRK08140 enoyl-CoA hydratase; 99.4 6.7E-13 1.5E-17 98.4 7.6 70 3-76 150-219 (262)
14 PRK08252 enoyl-CoA hydratase; 99.4 6.8E-13 1.5E-17 98.2 7.5 70 3-76 142-211 (254)
15 PRK08259 enoyl-CoA hydratase; 99.4 7.3E-13 1.6E-17 98.3 7.6 69 4-76 145-213 (254)
16 PRK09120 p-hydroxycinnamoyl Co 99.4 6.9E-13 1.5E-17 99.5 7.5 70 3-76 155-224 (275)
17 PRK06143 enoyl-CoA hydratase; 99.4 8.4E-13 1.8E-17 98.0 7.8 70 3-76 150-219 (256)
18 PRK11423 methylmalonyl-CoA dec 99.4 7.5E-13 1.6E-17 98.5 7.3 69 3-75 147-215 (261)
19 PRK06190 enoyl-CoA hydratase; 99.4 8.7E-13 1.9E-17 98.3 7.7 70 3-76 145-214 (258)
20 PRK07938 enoyl-CoA hydratase; 99.4 7.7E-13 1.7E-17 97.9 7.2 70 3-76 142-211 (249)
21 PRK07260 enoyl-CoA hydratase; 99.4 9.7E-13 2.1E-17 97.3 7.6 71 3-77 149-219 (255)
22 PRK05864 enoyl-CoA hydratase; 99.4 8.6E-13 1.9E-17 98.8 7.3 70 3-76 161-230 (276)
23 PRK07799 enoyl-CoA hydratase; 99.4 1E-12 2.2E-17 97.6 7.7 69 4-76 152-220 (263)
24 PLN02664 enoyl-CoA hydratase/d 99.4 1.3E-12 2.8E-17 97.8 8.0 71 3-76 162-232 (275)
25 PRK08258 enoyl-CoA hydratase; 99.4 9.9E-13 2.2E-17 98.5 7.4 70 3-76 165-234 (277)
26 PRK07396 dihydroxynaphthoic ac 99.4 1E-12 2.3E-17 98.3 7.5 70 3-76 158-227 (273)
27 PRK08139 enoyl-CoA hydratase; 99.4 1.2E-12 2.6E-17 97.7 7.6 69 4-76 155-223 (266)
28 PRK05980 enoyl-CoA hydratase; 99.4 1.3E-12 2.8E-17 96.8 7.8 70 3-76 151-220 (260)
29 PRK06494 enoyl-CoA hydratase; 99.4 1.1E-12 2.5E-17 97.3 7.3 70 3-76 145-214 (259)
30 PRK05674 gamma-carboxygeranoyl 99.4 1E-12 2.3E-17 98.0 7.1 70 3-76 151-220 (265)
31 PRK06563 enoyl-CoA hydratase; 99.4 1.3E-12 2.7E-17 96.7 7.5 69 4-76 144-212 (255)
32 PRK07327 enoyl-CoA hydratase; 99.4 1.3E-12 2.7E-17 97.6 7.5 69 3-75 157-225 (268)
33 PRK05995 enoyl-CoA hydratase; 99.4 1.3E-12 2.8E-17 96.9 7.5 70 3-76 149-218 (262)
34 PRK08138 enoyl-CoA hydratase; 99.4 1.6E-12 3.5E-17 96.5 7.9 70 3-76 149-218 (261)
35 KOG1680 Enoyl-CoA hydratase [L 99.4 1.4E-12 2.9E-17 99.1 7.0 68 4-75 179-246 (290)
36 PRK09076 enoyl-CoA hydratase; 99.4 2.1E-12 4.6E-17 95.8 7.9 70 3-76 146-215 (258)
37 PRK06142 enoyl-CoA hydratase; 99.4 2.2E-12 4.7E-17 96.3 8.0 71 3-76 160-230 (272)
38 PRK03580 carnitinyl-CoA dehydr 99.4 1.9E-12 4E-17 96.2 7.6 70 3-76 145-214 (261)
39 PRK05981 enoyl-CoA hydratase; 99.4 1.7E-12 3.8E-17 96.4 7.4 70 3-76 154-223 (266)
40 PRK09245 enoyl-CoA hydratase; 99.4 1.7E-12 3.8E-17 96.4 7.4 70 3-76 154-223 (266)
41 PRK06127 enoyl-CoA hydratase; 99.4 1.8E-12 3.8E-17 96.8 7.4 70 3-76 157-226 (269)
42 PRK06495 enoyl-CoA hydratase; 99.4 2E-12 4.2E-17 95.9 7.4 70 3-76 145-214 (257)
43 PRK07511 enoyl-CoA hydratase; 99.4 2.3E-12 4.9E-17 95.5 7.7 70 3-76 149-218 (260)
44 PRK05862 enoyl-CoA hydratase; 99.4 2.2E-12 4.7E-17 95.6 7.6 70 3-76 145-214 (257)
45 PRK12478 enoyl-CoA hydratase; 99.4 2E-12 4.4E-17 98.2 7.5 67 6-76 163-229 (298)
46 PLN02921 naphthoate synthase 99.4 1.9E-12 4.2E-17 99.8 7.4 70 3-76 212-281 (327)
47 PRK08272 enoyl-CoA hydratase; 99.4 2.2E-12 4.7E-17 97.8 7.5 69 4-76 176-244 (302)
48 PRK08321 naphthoate synthase; 99.4 1.9E-12 4.2E-17 98.3 7.2 69 3-75 187-255 (302)
49 PRK09674 enoyl-CoA hydratase-i 99.4 2.5E-12 5.4E-17 95.2 7.6 69 4-76 144-212 (255)
50 PRK07658 enoyl-CoA hydratase; 99.4 2.8E-12 6E-17 94.8 7.7 69 4-76 146-214 (257)
51 PRK06210 enoyl-CoA hydratase; 99.4 2.4E-12 5.2E-17 95.9 7.4 71 3-76 159-229 (272)
52 PRK08290 enoyl-CoA hydratase; 99.3 3.1E-12 6.8E-17 96.6 7.6 69 4-76 168-236 (288)
53 PRK07657 enoyl-CoA hydratase; 99.3 3.6E-12 7.8E-17 94.5 7.7 70 3-76 148-217 (260)
54 PRK05809 3-hydroxybutyryl-CoA 99.3 3.7E-12 7.9E-17 94.4 7.8 70 3-76 148-217 (260)
55 PRK06023 enoyl-CoA hydratase; 99.3 3.5E-12 7.6E-17 94.3 7.5 69 3-75 148-216 (251)
56 PRK08260 enoyl-CoA hydratase; 99.3 3.5E-12 7.5E-17 96.5 7.6 71 3-76 164-234 (296)
57 PRK05870 enoyl-CoA hydratase; 99.3 4.3E-12 9.3E-17 93.7 7.8 68 3-76 146-213 (249)
58 PRK07659 enoyl-CoA hydratase; 99.3 5.3E-12 1.1E-16 93.7 8.1 69 3-76 149-217 (260)
59 PRK06688 enoyl-CoA hydratase; 99.3 6.7E-12 1.5E-16 92.7 7.5 70 3-76 147-216 (259)
60 PRK07468 enoyl-CoA hydratase; 99.3 6.8E-12 1.5E-16 93.3 7.4 68 5-76 152-219 (262)
61 PF00378 ECH: Enoyl-CoA hydrat 99.3 4E-12 8.7E-17 93.0 5.1 70 3-76 141-210 (245)
62 PRK08788 enoyl-CoA hydratase; 99.3 1.1E-11 2.3E-16 94.2 6.6 71 3-75 172-242 (287)
63 PRK07509 enoyl-CoA hydratase; 99.2 3.7E-11 8.1E-16 89.0 8.1 68 3-76 153-220 (262)
64 COG1024 CaiD Enoyl-CoA hydrata 99.2 8.3E-11 1.8E-15 87.0 7.7 71 3-77 149-219 (257)
65 TIGR03189 dienoyl_CoA_hyt cycl 99.2 8.7E-11 1.9E-15 87.1 7.7 68 3-76 139-207 (251)
66 PRK07112 polyketide biosynthes 99.2 1.2E-10 2.6E-15 86.4 7.4 67 3-75 146-212 (255)
67 PRK07854 enoyl-CoA hydratase; 99.1 1.6E-10 3.4E-15 85.3 7.5 65 3-75 137-201 (243)
68 PRK08184 benzoyl-CoA-dihydrodi 99.1 1.5E-10 3.2E-15 94.8 7.6 68 4-75 430-500 (550)
69 COG0447 MenB Dihydroxynaphthoi 99.1 6.9E-11 1.5E-15 88.1 5.0 71 2-76 166-236 (282)
70 KOG1681 Enoyl-CoA isomerase [L 99.1 5.9E-11 1.3E-15 89.0 4.0 69 4-74 178-246 (292)
71 TIGR03222 benzo_boxC benzoyl-C 99.1 1.9E-10 4.2E-15 94.1 7.3 68 4-75 426-496 (546)
72 PRK07827 enoyl-CoA hydratase; 99.1 3.9E-10 8.4E-15 83.7 6.1 65 7-77 155-219 (260)
73 PRK06072 enoyl-CoA hydratase; 99.0 1.1E-09 2.5E-14 80.8 7.4 65 4-76 141-205 (248)
74 PRK05617 3-hydroxyisobutyryl-C 99.0 1.7E-09 3.8E-14 83.7 6.7 62 12-76 158-281 (342)
75 PRK11154 fadJ multifunctional 98.8 1.1E-08 2.3E-13 85.7 7.3 51 3-55 154-204 (708)
76 TIGR03222 benzo_boxC benzoyl-C 98.8 5.2E-09 1.1E-13 85.7 5.4 69 6-76 178-251 (546)
77 PRK11730 fadB multifunctional 98.8 1E-08 2.2E-13 85.9 7.2 54 4-59 154-207 (715)
78 PLN02874 3-hydroxyisobutyryl-C 98.8 1E-08 2.2E-13 80.5 6.7 41 4-47 157-197 (379)
79 TIGR02440 FadJ fatty oxidation 98.8 2.2E-08 4.7E-13 83.8 7.4 50 3-54 149-198 (699)
80 TIGR03200 dearomat_oah 6-oxocy 98.8 1.9E-08 4.2E-13 78.9 6.7 86 3-90 175-272 (360)
81 PRK08184 benzoyl-CoA-dihydrodi 98.8 1.1E-08 2.5E-13 83.8 5.5 54 6-61 182-235 (550)
82 PLN02157 3-hydroxyisobutyryl-C 98.7 2.5E-08 5.4E-13 79.1 6.7 66 4-75 185-250 (401)
83 KOG0016 Enoyl-CoA hydratase/is 98.7 7.7E-08 1.7E-12 72.7 7.8 74 4-81 159-232 (266)
84 KOG1682 Enoyl-CoA isomerase [L 98.7 7.2E-08 1.6E-12 71.7 6.9 68 6-77 178-245 (287)
85 cd06558 crotonase-like Crotona 98.7 3.6E-08 7.7E-13 69.1 4.8 51 3-55 144-194 (195)
86 PLN02988 3-hydroxyisobutyryl-C 98.5 4.2E-07 9.2E-12 71.6 6.3 65 4-74 157-221 (381)
87 TIGR02441 fa_ox_alpha_mit fatt 98.4 3.3E-07 7.1E-12 77.3 5.8 55 3-58 161-227 (737)
88 KOG1679 Enoyl-CoA hydratase [L 98.4 3.3E-07 7E-12 68.6 4.9 70 4-76 176-248 (291)
89 TIGR02437 FadB fatty oxidation 98.4 3.9E-07 8.4E-12 76.6 5.6 53 4-58 154-206 (714)
90 cd07020 Clp_protease_NfeD_1 No 98.2 1.7E-06 3.7E-11 61.6 3.5 45 4-48 127-172 (187)
91 PLN02851 3-hydroxyisobutyryl-C 97.8 6.1E-05 1.3E-09 60.1 6.9 51 4-58 190-240 (407)
92 cd07014 S49_SppA Signal peptid 97.1 0.00036 7.9E-09 49.0 2.7 36 11-47 139-174 (177)
93 TIGR00705 SppA_67K signal pept 96.5 0.0031 6.7E-08 52.3 4.1 41 14-59 484-524 (584)
94 cd07016 S14_ClpP_1 Caseinolyti 96.1 0.0048 1E-07 42.4 2.6 35 4-38 125-160 (160)
95 cd07015 Clp_protease_NfeD Nodu 95.6 0.016 3.5E-07 41.4 3.5 38 10-47 134-171 (172)
96 cd00394 Clp_protease_like Case 95.3 0.012 2.7E-07 40.2 2.1 28 11-38 134-161 (161)
97 TIGR00706 SppA_dom signal pept 94.9 0.045 9.7E-07 39.4 4.1 39 11-51 166-204 (207)
98 PRK12553 ATP-dependent Clp pro 94.7 0.029 6.3E-07 40.8 2.7 34 11-44 172-205 (207)
99 PRK14512 ATP-dependent Clp pro 94.4 0.048 1E-06 39.5 3.2 37 11-47 158-194 (197)
100 PF01343 Peptidase_S49: Peptid 94.4 0.023 5.1E-07 39.1 1.5 36 16-52 115-150 (154)
101 PRK10949 protease 4; Provision 93.8 0.091 2E-06 44.2 4.2 40 11-52 500-539 (618)
102 cd07022 S49_Sppa_36K_type Sign 93.8 0.074 1.6E-06 38.4 3.3 33 11-46 178-210 (214)
103 cd07013 S14_ClpP Caseinolytic 93.4 0.079 1.7E-06 37.0 2.8 28 11-38 135-162 (162)
104 cd07019 S49_SppA_1 Signal pept 93.1 0.11 2.4E-06 37.5 3.2 35 11-47 174-208 (211)
105 PRK11778 putative inner membra 92.9 0.1 2.2E-06 40.9 3.0 37 15-52 260-296 (330)
106 cd07017 S14_ClpP_2 Caseinolyti 92.6 0.12 2.6E-06 36.2 2.7 28 11-38 144-171 (171)
107 CHL00028 clpP ATP-dependent Cl 91.7 0.15 3.3E-06 37.1 2.5 31 11-41 166-196 (200)
108 cd07018 S49_SppA_67K_type Sign 91.4 0.26 5.6E-06 35.9 3.4 36 11-48 184-219 (222)
109 PRK00277 clpP ATP-dependent Cl 90.6 0.23 5.1E-06 35.8 2.6 31 11-41 166-196 (200)
110 TIGR00493 clpP ATP-dependent C 90.5 0.24 5.2E-06 35.6 2.5 30 11-40 161-190 (191)
111 cd07021 Clp_protease_NfeD_like 90.4 0.29 6.3E-06 34.8 2.9 25 23-47 153-177 (178)
112 PF00574 CLP_protease: Clp pro 90.3 0.13 2.7E-06 36.0 1.0 31 11-41 151-181 (182)
113 PRK14513 ATP-dependent Clp pro 90.1 0.27 5.9E-06 35.9 2.6 31 11-41 162-192 (201)
114 PRK12551 ATP-dependent Clp pro 90.1 0.29 6.3E-06 35.6 2.7 31 11-41 160-190 (196)
115 PRK14514 ATP-dependent Clp pro 89.9 0.29 6.3E-06 36.3 2.6 30 11-40 189-218 (221)
116 cd07023 S49_Sppa_N_C Signal pe 88.8 0.31 6.7E-06 34.9 2.0 31 16-47 175-205 (208)
117 smart00250 PLEC Plectin repeat 86.1 0.5 1.1E-05 25.4 1.4 18 20-37 18-35 (38)
118 PF00681 Plectin: Plectin repe 86.0 0.3 6.4E-06 27.3 0.5 20 20-39 18-37 (45)
119 PRK12552 ATP-dependent Clp pro 85.0 0.83 1.8E-05 34.0 2.6 31 11-41 184-214 (222)
120 COG0740 ClpP Protease subunit 82.5 0.63 1.4E-05 34.2 1.0 26 16-41 167-192 (200)
121 KOG0840 ATP-dependent Clp prot 81.6 0.92 2E-05 34.8 1.7 22 20-41 236-257 (275)
122 COG0616 SppA Periplasmic serin 80.9 1.5 3.2E-05 33.8 2.6 37 15-52 236-272 (317)
123 KOG1684 Enoyl-CoA hydratase [L 77.5 1.5 3.2E-05 35.3 1.7 35 6-41 188-222 (401)
124 PF00610 DEP: Domain found in 66.9 7.5 0.00016 23.0 2.7 35 21-60 15-52 (74)
125 cd04438 DEP_dishevelled DEP (D 63.0 11 0.00025 23.7 3.1 34 22-60 28-63 (84)
126 COG1030 NfeD Membrane-bound se 62.7 11 0.00025 30.8 3.8 40 10-49 157-196 (436)
127 cd04448 DEP_PIKfyve DEP (Dishe 57.2 18 0.00038 22.6 3.2 34 22-60 27-61 (81)
128 smart00049 DEP Domain found in 56.8 14 0.00031 21.9 2.7 37 20-60 17-53 (77)
129 cd04443 DEP_GPR155 DEP (Dishev 55.5 20 0.00043 22.5 3.3 34 22-60 29-63 (83)
130 cd04449 DEP_DEPDC5-like DEP (D 54.3 19 0.00041 22.4 3.0 39 19-60 25-63 (83)
131 cd04371 DEP DEP domain, named 53.8 18 0.00038 21.5 2.8 35 22-60 27-61 (81)
132 cd04450 DEP_RGS7-like DEP (Dis 51.5 20 0.00044 22.4 2.9 35 22-60 27-61 (88)
133 TIGR00705 SppA_67K signal pept 50.9 15 0.00033 30.7 2.8 28 23-51 251-278 (584)
134 PRK10949 protease 4; Provision 49.2 18 0.00039 30.7 2.9 28 23-51 270-297 (618)
135 cd04439 DEP_1_P-Rex DEP (Dishe 48.7 25 0.00054 22.0 2.9 35 22-60 27-61 (81)
136 cd04444 DEP_PLEK2 DEP (Disheve 48.6 37 0.00079 22.7 3.8 45 22-70 30-74 (109)
137 CHL00198 accA acetyl-CoA carbo 44.6 22 0.00048 27.9 2.7 22 21-42 250-271 (322)
138 PRK12319 acetyl-CoA carboxylas 41.2 1E+02 0.0023 23.2 5.8 19 23-41 196-214 (256)
139 cd04441 DEP_2_DEP6 DEP (Dishev 40.3 34 0.00074 21.7 2.6 34 23-60 32-65 (85)
140 PRK05724 acetyl-CoA carboxylas 35.2 1.5E+02 0.0033 23.2 6.0 20 22-41 248-267 (319)
141 cd04442 DEP_1_DEP6 DEP (Dishev 34.5 50 0.0011 20.7 2.7 34 23-60 28-61 (82)
142 PLN03230 acetyl-coenzyme A car 34.0 1.7E+02 0.0036 24.1 6.2 19 23-41 319-337 (431)
143 cd04437 DEP_Epac DEP (Dishevel 32.7 62 0.0013 22.0 3.1 34 22-60 29-64 (125)
144 PF09371 Tex_N: Tex-like prote 32.0 2E+02 0.0043 20.8 7.0 60 14-76 117-178 (193)
145 PLN03229 acetyl-coenzyme A car 30.7 1.9E+02 0.0042 25.5 6.3 21 21-41 338-358 (762)
146 TIGR00513 accA acetyl-CoA carb 30.3 51 0.0011 25.8 2.6 21 22-42 248-268 (316)
147 KOG3952 Uncharacterized conser 28.9 49 0.0011 25.5 2.2 30 62-91 271-303 (304)
148 COG0825 AccA Acetyl-CoA carbox 28.4 32 0.0007 27.0 1.2 23 20-42 245-267 (317)
149 cd04446 DEP_DEPDC4 DEP (Dishev 27.2 72 0.0016 20.7 2.6 38 22-60 26-68 (95)
150 PF08338 DUF1731: Domain of un 26.1 21 0.00045 20.1 -0.1 32 4-38 6-37 (48)
151 cd04447 DEP_BRCC3 DEP (Disheve 25.0 2E+02 0.0044 18.6 4.3 34 4-38 10-43 (92)
152 TIGR01004 PulS_OutS lipoprotei 24.3 2.4E+02 0.0053 19.4 5.2 42 39-84 61-102 (128)
No 1
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=99.71 E-value=5.6e-17 Score=119.59 Aligned_cols=93 Identities=57% Similarity=0.814 Sum_probs=83.0
Q ss_pred hhhhhhCcHHHH-HHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHhc
Q 045617 3 LIECKVGNPTAR-REMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLREVLDHL 81 (97)
Q Consensus 3 l~r~kig~~~~a-~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~~l~~~ 81 (97)
.+..++| +.++ ++++|||++|+|+||+++||||+++|+.+++++.|.++|++++.+++++.++..+|+.+|+++|+++
T Consensus 146 ~l~~~vG-~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~~~~~~ 224 (239)
T PLN02267 146 LLRAKIG-SPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEVCGKL 224 (239)
T ss_pred HHHHHcC-hHHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHh
Confidence 4677898 6666 6999999999999999999999999865789999999999999988889999999999999999999
Q ss_pred cCchhhhhhhhccCCC
Q 045617 82 DYDETVDQLKNTGSKL 97 (97)
Q Consensus 82 ~~~~~~~~~~~~~~~~ 97 (97)
..++++.+-. |-|||
T Consensus 225 ~~~~~~~~~~-~~~~~ 239 (239)
T PLN02267 225 GLDEEVEESH-TTSKL 239 (239)
T ss_pred cchhhhhhhh-cccCC
Confidence 9999998864 44554
No 2
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.44 E-value=5.1e-13 Score=97.46 Aligned_cols=78 Identities=22% Similarity=0.269 Sum_probs=68.5
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHhcc
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLREVLDHLD 82 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~~l~~~~ 82 (97)
+++.++| +..+++++++|++|+|+||+++||||+++|+ +++.+.+.++|++++.. ++.++..+|+.++......+.
T Consensus 143 ~l~~~~g-~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~~~~~l~ 218 (229)
T PRK06213 143 LARDRLT-PSAFQRAVINAEMFDPEEAVAAGFLDEVVPP-EQLLARAQAAARELAGL--NMGAHAATKLKVRAAALEAIR 218 (229)
T ss_pred HHHHHcC-HHHHHHHHHcCcccCHHHHHHCCCceeccCh-HHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHH
Confidence 4677898 7778999999999999999999999999985 88999999999999987 688999999999887655544
Q ss_pred Cc
Q 045617 83 YD 84 (97)
Q Consensus 83 ~~ 84 (97)
..
T Consensus 219 ~~ 220 (229)
T PRK06213 219 AA 220 (229)
T ss_pred hc
Confidence 43
No 3
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.43 E-value=5.1e-13 Score=97.58 Aligned_cols=69 Identities=20% Similarity=0.335 Sum_probs=63.5
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLR 75 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~ 75 (97)
.+.+++| +..++++++||++|+|+||+++||||+++|+ +++++++.++|+++++. +|.++..+|+.++.
T Consensus 150 ~l~~~ig-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~--~~~a~~~~K~~~~~ 218 (222)
T PRK05869 150 RLTRAAG-PSRAKELVFSGRFFDAEEALALGLIDEMVAP-DDVYDAAAAWARRFLDG--PPHALAAAKAGISD 218 (222)
T ss_pred HHHHHhC-HHHHHHHHHcCCCcCHHHHHHCCCCCEeeCc-hHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 4678899 8889999999999999999999999999985 89999999999999988 68899999999864
No 4
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.43 E-value=4.9e-13 Score=99.20 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=64.3
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..++++++||++|+|+||++|||||+++|+ +++++++.++|++++.. +|.++..+|+.++..
T Consensus 145 ~l~~~vG-~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~--~~~a~~~~K~~l~~~ 214 (256)
T TIGR03210 145 LLARVVG-EKKAREIWYLCRRYTAQEALAMGLVNAVVPH-DQLDAEVQKWCDEIVEK--SPTAIAIAKRSFNMD 214 (256)
T ss_pred HHHHHhC-HHHHHHHHHhCCCcCHHHHHHcCCceeeeCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh
Confidence 4678899 8889999999999999999999999999985 89999999999999988 688999999998754
No 5
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.42 E-value=5.5e-13 Score=99.20 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=64.4
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|||++|+|+||+++||||+++|+ +++++++.++|++++.+ +|.++..+|+.++..
T Consensus 154 ~l~~~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~--~~~a~~~~K~~l~~~ 223 (262)
T PRK06144 154 RLVALLG-AARVKDMLFTARLLEAEEALAAGLVNEVVED-AALDARADALAELLAAH--APLTLRATKEALRRL 223 (262)
T ss_pred HHHHHhC-HHHHHHHHHcCCCcCHHHHHHcCCcCeecCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh
Confidence 4678899 8889999999999999999999999999986 89999999999999988 688999999998754
No 6
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.42 E-value=5.9e-13 Score=98.54 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=64.0
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|+|++|+|+||++|||||+++|+ +++++++.++|++++.. +|.++..+|+.++..
T Consensus 144 ~l~~~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~~~~~~K~~l~~~ 213 (256)
T TIGR02280 144 SLPRLVG-RARAMGLAMLGEKLDARTAASWGLIWQVVDD-AALMDEAQALAVHLAAQ--PTRGLALTKRAIQAA 213 (256)
T ss_pred HHHHHhC-HHHHHHHHHcCCCCCHHHHHHcCCcceeeCh-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhh
Confidence 4677899 8889999999999999999999999999986 79999999999999988 688999999998754
No 7
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.42 E-value=6e-13 Score=98.77 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=63.7
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|||++|+|+||++|||||+++|+ +++++.+.++|++++.. +|.++..+|+.++..
T Consensus 143 ~l~~~iG-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 212 (255)
T PRK08150 143 RVPRLIG-VARMTDMMLTGRVYDAQEGERLGLAQYLVPA-GEALDKAMELARRIAQN--APLTNFAVLNALPRI 212 (255)
T ss_pred HHHHHhC-HHHHHHHHHcCCcCCHHHHHHcCCccEeeCc-hHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh
Confidence 3667899 8889999999999999999999999999986 78999999999999988 688999999998753
No 8
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.42 E-value=6.4e-13 Score=99.95 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=64.7
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +.++++++|||++|+|+||++|||||+++|+ +++++.+.+++++++.. ++.++..+|+.++..
T Consensus 159 ~l~~~~G-~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~--~~~a~~~~K~~l~~~ 228 (278)
T PLN03214 159 FMGRVID-RKVAESLLLRGRLVRPAEAKQLGLIDEVVPA-AALMEAAASAMERALKL--PSAARAATKALLREE 228 (278)
T ss_pred HHHHhcC-HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhh
Confidence 4678899 8889999999999999999999999999986 89999999999999987 688999999998765
No 9
>PLN02888 enoyl-CoA hydratase
Probab=99.42 E-value=6.5e-13 Score=99.16 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=64.3
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +.++++++|||++|+|+||+++||||++||+ ++++++|.++|++++.. +|.++..+|+.++..
T Consensus 150 ~l~~~vG-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 219 (265)
T PLN02888 150 KLSRIIG-ANRAREVSLTAMPLTAETAERWGLVNHVVEE-SELLKKAREVAEAIIKN--NQGMVLRYKSVINDG 219 (265)
T ss_pred HHHHHhC-HHHHHHHHHhCCccCHHHHHHcCCccEeeCh-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh
Confidence 4778899 8889999999999999999999999999986 78999999999999988 678999999999754
No 10
>PLN02600 enoyl-CoA hydratase
Probab=99.42 E-value=6.3e-13 Score=98.37 Aligned_cols=70 Identities=16% Similarity=0.291 Sum_probs=64.2
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|||++|+|+||+++||||+++|+ ++++++++++|++++.. +|.++..+|+.++..
T Consensus 139 ~l~~~~G-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~la~~--~p~a~~~~K~~l~~~ 208 (251)
T PLN02600 139 RLPRLVG-RSRAKELIFTGRRIGAREAASMGLVNYCVPA-GEAYEKALELAQEINQK--GPLAIKMAKKAINEG 208 (251)
T ss_pred HHHHHhC-HHHHHHHHHhCCccCHHHHHHcCCCcEeeCh-hHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 4778899 8889999999999999999999999999986 89999999999999988 688999999998754
No 11
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.41 E-value=5.4e-13 Score=99.08 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=64.2
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|+|++|+|+||++|||||+++|+ +++.+++.++|++++.. +|.++..+|+.++..
T Consensus 148 ~l~~~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 217 (259)
T TIGR01929 148 YLARIVG-QKKAREIWFLCRQYDAEQALDMGLVNTVVPL-ADLEKETVRWCREILQK--SPMAIRMLKAALNAD 217 (259)
T ss_pred HHHHHhH-HHHHHHHHHhCCccCHHHHHHcCCcccccCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhh
Confidence 4677898 8889999999999999999999999999985 89999999999999988 689999999998753
No 12
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.41 E-value=6e-13 Score=98.36 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=65.7
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLREVL 78 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~~l 78 (97)
.++.++| +..++++++||++|+|+||+++||||+++|+ ++++++|.++|++++.+ ++.++..+|+.++....
T Consensus 145 ~l~~~~g-~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~~~ 216 (249)
T PRK07110 145 ILPEKLG-LALGQEMLLTARYYRGAELKKRGVPFPVLPR-AEVLEKALELARSLAEK--PRHSLVLLKDHLVADRR 216 (249)
T ss_pred HHHHHhC-HHHHHHHHHcCCccCHHHHHHcCCCeEEeCh-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhhh
Confidence 4778899 8889999999999999999999999999985 78999999999999988 67899999999986643
No 13
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.41 E-value=6.7e-13 Score=98.41 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=64.1
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+..++| +..+++++|||++|+|+||++|||||+++|+ +++++++.++|++++.. +|.++..+|+.++..
T Consensus 150 ~l~~~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~--~~~a~~~~K~~l~~~ 219 (262)
T PRK08140 150 FLPRLVG-MARALGLALLGEKLSAEQAEQWGLIWRVVDD-AALADEAQQLAAHLATQ--PTRGLALIKQAMNAS 219 (262)
T ss_pred HHHHHhC-HHHHHHHHHcCCCcCHHHHHHcCCccEeeCh-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh
Confidence 4678899 8889999999999999999999999999986 78999999999999988 688999999998754
No 14
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.41 E-value=6.8e-13 Score=98.22 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=64.1
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|+|++|+|+||+++||||+++|+ +++++++.+++++++.. +|.++..+|+.++..
T Consensus 142 ~l~~~vg-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~--~~~a~~~~K~~l~~~ 211 (254)
T PRK08252 142 RLPRRIP-YHIAMELALTGDMLTAERAHELGLVNRLTEP-GQALDAALELAERIAAN--GPLAVAASKRIVVES 211 (254)
T ss_pred HHHHHcC-HHHHHHHHHcCCccCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh
Confidence 4677899 8889999999999999999999999999986 79999999999999987 688999999998754
No 15
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.41 E-value=7.3e-13 Score=98.26 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=63.6
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
+.+++| +..+++++|+|++|+|+||++|||||+++|+ ++++++|.++|+++++. +|.++..+|+.++..
T Consensus 145 l~~~iG-~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~~~~~ 213 (254)
T PRK08259 145 LPRLIG-HSRAMDLILTGRPVDADEALAIGLANRVVPK-GQARAAAEELAAELAAF--PQTCLRADRLSALEQ 213 (254)
T ss_pred HHHHhC-HHHHHHHHHcCCccCHHHHHHcCCCCEeeCh-hHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh
Confidence 667898 8889999999999999999999999999986 89999999999999988 688999999998753
No 16
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.41 E-value=6.9e-13 Score=99.46 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=64.5
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+..++| +..+++++|||++|+|+||++||||++++|+ +++.+++.++|++++.. +|.++..+|+.++..
T Consensus 155 ~l~~~iG-~~~a~~llltg~~~~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~p~a~~~~K~~l~~~ 224 (275)
T PRK09120 155 AMADTVG-HRDALYYIMTGETFTGRKAAEMGLVNESVPL-AQLRARTRELAAKLLEK--NPVVLRAAKDGFKRV 224 (275)
T ss_pred HHHHHcC-HHHHHHHHhcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 4678899 8889999999999999999999999999985 89999999999999988 689999999998754
No 17
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.41 E-value=8.4e-13 Score=98.04 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=64.3
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|+|++|+|+||++|||||+++|+ +++.+++.++|++++.. +|.++..+|+.++..
T Consensus 150 ~l~~~iG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 219 (256)
T PRK06143 150 LLPRLIG-WARTRWLLLTGETIDAAQALAWGLVDRVVPL-AELDAAVERLAASLAGC--GPQALRQQKRLLREW 219 (256)
T ss_pred HHHHhcC-HHHHHHHHHcCCcCCHHHHHHCCCcCeecCH-HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 4678899 8889999999999999999999999999985 89999999999999988 688999999998754
No 18
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.40 E-value=7.5e-13 Score=98.54 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=63.3
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLR 75 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~ 75 (97)
.+.+++| ++++++++|+|++++|+||++|||||+++|+ +++++.+.+++++++.+ +|.++..+|+.++.
T Consensus 147 ~l~~~vg-~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~l~~~--~~~a~~~~K~~~~~ 215 (261)
T PRK11423 147 NFTNDAG-FHIVKEMFFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEK--APLAIAVIKEQLRV 215 (261)
T ss_pred HHHHHhH-HHHHHHHHHcCCCcCHHHHHHcCCcCcccCH-HHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHh
Confidence 3667898 8999999999999999999999999999985 89999999999999988 68899999999863
No 19
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=99.40 E-value=8.7e-13 Score=98.34 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=64.3
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|||++|+|+||+++||||+++|+ ++++++|.+++++++.+ +|.++..+|+.++..
T Consensus 145 ~l~r~vG-~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 214 (258)
T PRK06190 145 RLPQKVG-IGRARRMSLTGDFLDAADALRAGLVTEVVPH-DELLPRARRLAASIAGN--NPAAVRALKASYDDG 214 (258)
T ss_pred HHHHHhC-HHHHHHHHHhCCccCHHHHHHcCCCeEecCH-hHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Confidence 4678899 8889999999999999999999999999985 79999999999999988 689999999998754
No 20
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.40 E-value=7.7e-13 Score=97.89 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=63.8
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+..++| +..+++++|||++|+|+||++|||||++||+ +++++.|.++|++++.. +|.++..+|+.++..
T Consensus 142 ~l~~~vg-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 211 (249)
T PRK07938 142 HLQRLVP-QHLMRALFFTAATITAAELHHFGSVEEVVPR-DQLDEAALEVARKIAAK--DTRVIRAAKEALNGI 211 (249)
T ss_pred HHHHhcC-HHHHHHHHHhCCcCCHHHHHHCCCccEEeCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhh
Confidence 3567898 8889999999999999999999999999985 89999999999999988 688999999998753
No 21
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.40 E-value=9.7e-13 Score=97.34 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=64.7
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLREV 77 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~~ 77 (97)
.+..++| +..+++++|+|++|+|+||+++||||+++|+ +++++.+.+++++++.. +|.++..+|+.++...
T Consensus 149 ~l~~~vg-~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~~~~~~ 219 (255)
T PRK07260 149 LLTRAIG-LNRATHLAMTGEALTAEKALEYGFVYRVAES-EKLEKTCEQLLKKLRRG--SSNSYAAIKSLVWESF 219 (255)
T ss_pred hhHHhhC-HHHHHHHHHhCCccCHHHHHHcCCcceecCH-hHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHh
Confidence 3667798 7789999999999999999999999999985 78999999999999988 6899999999998764
No 22
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.40 E-value=8.6e-13 Score=98.81 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=63.7
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|+|++|+|+||+++||||+++|+ +++++++.++|++++.. +|.++..+|+.++..
T Consensus 161 ~l~~~vG-~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~p~a~~~~K~~l~~~ 230 (276)
T PRK05864 161 LLPRAIG-SSRAFEIMLTGRDVDAEEAERIGLVSRQVPD-EQLLDTCYAIAARMAGF--SRPGIELTKRTLWSG 230 (276)
T ss_pred ehHhhhC-HHHHHHHHHcCCccCHHHHHHcCCcceeeCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhh
Confidence 3677899 8889999999999999999999999999985 89999999999999988 678999999998753
No 23
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.40 E-value=1e-12 Score=97.57 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=63.4
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
+.+.+| +..+++++|||++|+|+||+++||||+++|+ +++++++++++++++.. +|.++..+|+.++..
T Consensus 152 l~r~vG-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~~~~--~~~a~~~~K~~l~~~ 220 (263)
T PRK07799 152 LVRQIP-YTVACDLLLTGRHITAAEAKEIGLIGHVVPD-GQALDKALELAELINAN--GPLAVQAILRTIRET 220 (263)
T ss_pred HHHHhC-HHHHHHHHHcCCCCCHHHHHHcCCccEecCc-chHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHh
Confidence 567798 8889999999999999999999999999986 78999999999999988 688999999998754
No 24
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.39 E-value=1.3e-12 Score=97.82 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=63.9
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+..++| ++++++++|||++|+|+||++|||||+++|+.+++.+.+.++|++++.+ +|.++..+|+.++..
T Consensus 162 ~l~~~vG-~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~--~p~a~~~~K~~l~~~ 232 (275)
T PLN02664 162 RLPSIVG-YGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAK--SPLAVTGTKAVLLRS 232 (275)
T ss_pred HHHHHhC-HHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 3678899 8889999999999999999999999999985478999999999999998 688999999998754
No 25
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.39 E-value=9.9e-13 Score=98.51 Aligned_cols=70 Identities=17% Similarity=0.266 Sum_probs=64.2
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +.++++++|+|++|+|+||++|||||+++|+ +++++.+.++|++++.. +|.++..+|+.++..
T Consensus 165 ~l~~~vG-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 234 (277)
T PRK08258 165 LLPRIIG-QGRASELLYTGRSMSAEEGERWGFFNRLVEP-EELLAEAQALARRLAAG--PTFAHGMTKTMLHQE 234 (277)
T ss_pred HHHHHhC-HHHHHHHHHcCCCCCHHHHHHcCCCcEecCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhh
Confidence 4778899 8889999999999999999999999999985 78999999999999988 688999999998764
No 26
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.39 E-value=1e-12 Score=98.32 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=64.0
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +.++++++|||++|+|+||+++||||+++|+ +++++++.++|++++.+ +|.++..+|+.++..
T Consensus 158 ~l~~~vG-~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 227 (273)
T PRK07396 158 YLARIVG-QKKAREIWFLCRQYDAQEALDMGLVNTVVPL-ADLEKETVRWCREMLQN--SPMALRCLKAALNAD 227 (273)
T ss_pred HHHHHhh-HHHHHHHHHhCCCcCHHHHHHcCCcCeecCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhh
Confidence 3677898 8889999999999999999999999999985 89999999999999988 688999999998754
No 27
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.39 E-value=1.2e-12 Score=97.69 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=63.3
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
+.+++| +..+++++|||++|+|+||++|||||+++|+ +++.+.+.++|++++.. +|.++..+|+.++..
T Consensus 155 l~r~vG-~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 223 (266)
T PRK08139 155 LSRNVP-RKQAMEMLLTGEFIDAATAREWGLVNRVVPA-DALDAAVARLAAVIAAK--SPAAVRIGKEAFYRQ 223 (266)
T ss_pred HHHHhC-HHHHHHHHHcCCccCHHHHHHcCCccEeeCh-hHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh
Confidence 567798 8889999999999999999999999999985 78999999999999988 688999999998754
No 28
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.39 E-value=1.3e-12 Score=96.78 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=63.7
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|+|++|+|+||+++||||+++|+ +++++++.++|++++.. +|.++..+|+.++..
T Consensus 151 ~l~~~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~p~a~~~~K~~~~~~ 220 (260)
T PRK05980 151 RLPRLAG-RKRALELLLTGDAFSAERALEIGLVNAVVPH-EELLPAARALARRIIRH--SPVAVAAILTAVTRG 220 (260)
T ss_pred HHHhhcC-HHHHHHHHHcCCccCHHHHHHcCCCCcccCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 4678899 8889999999999999999999999999986 78999999999999988 678999999988754
No 29
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.39 E-value=1.1e-12 Score=97.27 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=63.9
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|||++|+|+||+++||||+++|+ +++++.+.++|++++.. +|.++..+|+.++..
T Consensus 145 ~l~~~vg-~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 214 (259)
T PRK06494 145 RLPRQIG-LKRAMGMILTGRRVTAREGLELGFVNEVVPA-GELLAAAERWADDILAC--SPLSIRASKQAVYRG 214 (259)
T ss_pred HHHHHcC-HHHHHHHHHcCCcCCHHHHHHcCCCcEecCH-hHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh
Confidence 3667899 8889999999999999999999999999985 78999999999999988 688999999998753
No 30
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.39 E-value=1e-12 Score=97.95 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=63.6
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +.++++++|||++|+|+||+++||||+++|+ +++++++.++|++++.. +|.++..+|+.++..
T Consensus 151 ~l~~~vG-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~p~a~~~~K~~l~~~ 220 (265)
T PRK05674 151 FVVKAIG-ERAARRYALTAERFDGRRARELGLLAESYPA-AELEAQVEAWIANLLLN--SPQALRASKDLLREV 220 (265)
T ss_pred HHHHHhC-HHHHHHHHHhCcccCHHHHHHCCCcceecCH-HHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh
Confidence 3567799 8889999999999999999999999999985 89999999999999988 688999999988653
No 31
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.39 E-value=1.3e-12 Score=96.73 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=63.1
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
+..++| ++.+++++|||++|+|+||+++||||+++|+ ++++++|.+++++++.. +|.++..+|+.++..
T Consensus 144 l~~~vG-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~~~~~ 212 (255)
T PRK06563 144 FPQAAG-WGNAMRYLLTGDEFDAQEALRLGLVQEVVPP-GEQLERAIELAERIARA--APLGVQATLASARAA 212 (255)
T ss_pred HHHHhh-HHHHHHHHHcCCCcCHHHHHHcCCCcEeeCH-HHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHh
Confidence 567898 8889999999999999999999999999986 89999999999999987 688999999988754
No 32
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.39 E-value=1.3e-12 Score=97.56 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=63.2
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLR 75 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~ 75 (97)
.+...+| +..+++++|||++|+|+||+++||||+++|+ ++++++|.++|+++++. +|.++..+|+.++.
T Consensus 157 ~l~~~vG-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~ 225 (268)
T PRK07327 157 VWPLLCG-MAKAKYYLLLCEPVSGEEAERIGLVSLAVDD-DELLPKALEVAERLAAG--SQTAIRWTKYALNN 225 (268)
T ss_pred HHHHHhC-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 3567788 8889999999999999999999999999985 89999999999999988 68899999999875
No 33
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.38 E-value=1.3e-12 Score=96.87 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=63.7
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|+|++|+|+||+++||||+++|+ +++.+++.++|++++.. +|.++..+|+.++..
T Consensus 149 ~l~~~vg-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 218 (262)
T PRK05995 149 YVIRAMG-ERAARRYFLTAERFDAAEALRLGLVHEVVPA-EALDAKVDELLAALVAN--SPQAVRAGKRLVRDV 218 (262)
T ss_pred HHHHHhC-HHHHHHHHHcCCccCHHHHHHcCCCCeecCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhh
Confidence 3567899 8889999999999999999999999999985 78999999999999988 688999999998754
No 34
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.38 E-value=1.6e-12 Score=96.51 Aligned_cols=70 Identities=26% Similarity=0.302 Sum_probs=63.4
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|+|++|+|+||++|||||+++|+ ++++++|.++|++++.. ++.++..+|+.++..
T Consensus 149 ~l~~~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~--~~~a~~~~K~~l~~~ 218 (261)
T PRK08138 149 RLVRAVG-KFKAMRMALTGCMVPAPEALAIGLVSEVVED-EQTLPRALELAREIARM--PPLALAQIKEVVLAG 218 (261)
T ss_pred HHHHHhC-HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 3667799 8889999999999999999999999999986 78999999999999977 578999999998754
No 35
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.37 E-value=1.4e-12 Score=99.12 Aligned_cols=68 Identities=26% Similarity=0.353 Sum_probs=63.4
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLR 75 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~ 75 (97)
+.+.|| +..|+|+++||++++|+||+++|||++|+|. ++++.+|++++.+|++. ++.++...|+.+|.
T Consensus 179 l~r~vG-~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~-~~~l~eAv~l~~~Ia~~--~~~~v~~~K~svn~ 246 (290)
T KOG1680|consen 179 LPRIVG-KSRALEMILTGRRLGAQEAKKIGLVNKVVPS-GDALGEAVKLAEQIAKN--SPLVVRADKESVNA 246 (290)
T ss_pred HHHHhC-hHHHHHHHHhcCcccHHHHHhCCceeEeecc-hhHHHHHHHHHHHHHhC--CHHHHHHHHHHHHH
Confidence 566798 8889999999999999999999999999996 78999999999999998 68999999999986
No 36
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.37 E-value=2.1e-12 Score=95.79 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=63.8
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|||++|+|+||++|||||+++|+ +++++++.++|++++.. +|.++..+|+.++..
T Consensus 146 ~l~~~iG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~--~~~a~~~~K~~l~~~ 215 (258)
T PRK09076 146 NLPWLVG-EGWAKRMILCGERVDAATALRIGLVEEVVEK-GEAREAALALAQKVANQ--SPSAVAACKTLIQAA 215 (258)
T ss_pred HHHHHhC-HHHHHHHHHcCCcCCHHHHHHCCCCceecCc-hhHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 3678899 8888999999999999999999999999986 78999999999999988 688999999998753
No 37
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.37 E-value=2.2e-12 Score=96.27 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=64.4
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+..++| +.++++++++|++|+|+||+++||||+++|+.+++++++.+++++++.. +|.++..+|+.++..
T Consensus 160 ~l~~~~G-~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~--~~~a~~~~K~~l~~~ 230 (272)
T PRK06142 160 RLPRIIG-DGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAK--SPLAVRGTKEVLDYM 230 (272)
T ss_pred HHHHHhC-HHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh
Confidence 3667898 8889999999999999999999999999985578999999999999988 688999999998754
No 38
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.37 E-value=1.9e-12 Score=96.22 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=63.8
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|+|++|+|+||+++||||+++|+ ++++++|.+++++++.. +|.++..+|+.++..
T Consensus 145 ~l~~~vg-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 214 (261)
T PRK03580 145 RLPKRLP-PAIANEMVMTGRRMDAEEALRWGIVNRVVPQ-AELMDRARELAQQLVNS--APLAIAALKEIYRET 214 (261)
T ss_pred HHHHHhC-HHHHHHHHHhCCccCHHHHHHcCCCcEecCH-hHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 4667899 8889999999999999999999999999985 89999999999999988 688999999998753
No 39
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.37 E-value=1.7e-12 Score=96.37 Aligned_cols=70 Identities=27% Similarity=0.331 Sum_probs=64.1
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|+|++|+|+||+++||||+++|+ +++++++.++|++++.+ ++.++..+|+.++..
T Consensus 154 ~l~~~vg-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~--~~~a~~~~K~~~~~~ 223 (266)
T PRK05981 154 LLPRLVG-KARAMELSLLGEKLPAETALQWGLVNRVVDD-AELMAEAMKLAHELANG--PTVALGLIRKLYWDS 223 (266)
T ss_pred HHHHHhH-HHHHHHHHHhCCCcCHHHHHHcCCceEeeCH-hHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Confidence 4778898 8889999999999999999999999999985 78999999999999987 578999999998764
No 40
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.37 E-value=1.7e-12 Score=96.38 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=63.9
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++++|++|+|+||++|||||+++|+ +++++.+.+++++++.. +|.++..+|+.++..
T Consensus 154 ~l~~~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~--~~~a~~~~K~~l~~~ 223 (266)
T PRK09245 154 LLPRIIG-MARAAEMAFTGDAIDAATALEWGLVSRVVPA-DQLLPAARALAERIAAN--PPHALRLTKRLLREG 223 (266)
T ss_pred hHHHHhh-HHHHHHHHHcCCCcCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh
Confidence 4677898 8889999999999999999999999999985 78999999999999998 678999999998754
No 41
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.37 E-value=1.8e-12 Score=96.80 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=64.0
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +.++++++|||++|+|+||+++||||+++|+ +++++++.++|++++.. +|.++..+|+.++..
T Consensus 157 ~l~~~vG-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~--~~~a~~~~K~~l~~~ 226 (269)
T PRK06127 157 NLVDLVG-PSAAKDLFYTARRFDAAEALRIGLVHRVTAA-DDLETALADYAATIAGN--APLTLRAAKRAIAEL 226 (269)
T ss_pred HHHHHhC-HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh
Confidence 4778899 8889999999999999999999999999985 89999999999999987 688999999998754
No 42
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.37 E-value=2e-12 Score=95.91 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=63.8
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +.++++++|+|++|+|+||+++||||+++|+ +++++.+.+++++++.. +|.++..+|+.++..
T Consensus 145 ~l~~~~g-~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~~~~~a~~~a~~l~~~--~~~a~~~~K~~l~~~ 214 (257)
T PRK06495 145 HAMRLFG-HSLTRRMMLTGYRVPAAELYRRGVIEACLPP-EELMPEAMEIAREIASK--SPLATRLAKDALNTI 214 (257)
T ss_pred HHHHHhC-HHHHHHHHHcCCeeCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 3667898 8889999999999999999999999999985 88999999999999988 688999999998753
No 43
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.36 E-value=2.3e-12 Score=95.48 Aligned_cols=70 Identities=11% Similarity=0.246 Sum_probs=63.9
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| ++.+++++|||++|+|+||+++||||+++|+ +++++++.+++++++.+ +|.++..+|+.++..
T Consensus 149 ~l~~~vg-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~--~~~~~~~~K~~l~~~ 218 (260)
T PRK07511 149 FLARALP-RQLATELLLEGKPISAERLHALGVVNRLAEP-GQALAEALALADQLAAG--SPNALARIKSLIADA 218 (260)
T ss_pred HHHHHhC-HHHHHHHHHhCCCCCHHHHHHcCCccEeeCc-hHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhh
Confidence 4778899 8889999999999999999999999999986 78999999999999987 578999999998754
No 44
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.36 E-value=2.2e-12 Score=95.58 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=63.8
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|||++|+|+||++|||||+++|+ ++++++|.+++++++.. ++.++..+|+.++..
T Consensus 145 ~l~~~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~--~~~a~~~~K~~l~~~ 214 (257)
T PRK05862 145 RLTRAVG-KAKAMDLCLTGRMMDAAEAERAGLVSRVVPA-DKLLDEALAAATTIASF--SLPAVMMAKEAVNRA 214 (257)
T ss_pred HHHHHhC-HHHHHHHHHhCCccCHHHHHHcCCCCEeeCH-hHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 4677898 8889999999999999999999999999985 89999999999999987 688999999998754
No 45
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.36 E-value=2e-12 Score=98.15 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=61.7
Q ss_pred hhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 6 CKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 6 ~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.++| +.++++++|||++|+|+||+++||||++||+ +++++++.++|++++.+ +|.++..+|+.++..
T Consensus 163 ~~vG-~~~A~~llltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~--~p~a~~~~K~~l~~~ 229 (298)
T PRK12478 163 YRLS-LAKVKWHSLTGRPLTGVQAAEAELINEAVPF-ERLEARVAEVATELARI--PLSQLQAQKLIVNQA 229 (298)
T ss_pred HHhh-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 4698 8889999999999999999999999999985 89999999999999987 689999999998753
No 46
>PLN02921 naphthoate synthase
Probab=99.36 E-value=1.9e-12 Score=99.81 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=64.0
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|+|++|+|+||++|||||+++|+ +++.+++.++|++++.+ +|.++..+|+.++..
T Consensus 212 ~L~rliG-~~~A~ellltG~~~~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~--~p~al~~~K~~l~~~ 281 (327)
T PLN02921 212 IMARLVG-QKKAREMWFLARFYTASEALKMGLVNTVVPL-DELEGETVKWCREILRN--SPTAIRVLKSALNAA 281 (327)
T ss_pred HHHHHhC-HHHHHHHHHcCCcCCHHHHHHCCCceEEeCH-HHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh
Confidence 3667899 8889999999999999999999999999985 89999999999999988 688999999998753
No 47
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.36 E-value=2.2e-12 Score=97.81 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=62.9
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
+..++| ++++++++|||++|+|+||++|||||+++|+ +++.+++.++|++++.. +|.++..+|+.++..
T Consensus 176 ~~~~vG-~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~la~~ia~~--~~~a~~~~K~~l~~~ 244 (302)
T PRK08272 176 WAYRLG-PQRAKRLLFTGDCITGAQAAEWGLAVEAVPP-EELDERTERLVERIAAV--PVNQLAMVKLAVNSA 244 (302)
T ss_pred HHHHhh-HHHHHHHHHcCCccCHHHHHHcCCCceecCH-HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence 455798 8889999999999999999999999999985 89999999999999988 688999999988753
No 48
>PRK08321 naphthoate synthase; Validated
Probab=99.36 E-value=1.9e-12 Score=98.35 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=63.6
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLR 75 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~ 75 (97)
.+.+++| +.++++++|||++|+|+||+++||||+++|+ +++++++.++|++++.+ ++.++..+|+.++.
T Consensus 187 ~L~r~vG-~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~ 255 (302)
T PRK08321 187 YLARQVG-QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH-AELETEALEWAREINGK--SPTAMRMLKYAFNL 255 (302)
T ss_pred HHHHHhC-HHHHHHHHHcCCccCHHHHHHCCCceEeeCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHh
Confidence 4778899 8889999999999999999999999999985 78999999999999988 68899999999864
No 49
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.36 E-value=2.5e-12 Score=95.24 Aligned_cols=69 Identities=17% Similarity=0.332 Sum_probs=63.1
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
+.+++| +..+++++|+|++|+|+||+++||||+++|+ +++++.|.++|++++.. +|.++..+|+.++..
T Consensus 144 l~~~ig-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~--~~~a~~~~K~~l~~~ 212 (255)
T PRK09674 144 LIRSVG-KSLASQMVLTGESITAQQAQQAGLVSEVFPP-ELTLERALQLASKIARH--SPLALRAAKQALRQS 212 (255)
T ss_pred HHHHhC-HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh
Confidence 567798 8889999999999999999999999999986 78999999999999988 688999999998753
No 50
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.36 E-value=2.8e-12 Score=94.78 Aligned_cols=69 Identities=17% Similarity=0.293 Sum_probs=63.0
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
+.+++| +..+++++++|++|+|+||+++||||+++|+ ++++++|.++|++++.+ +|.++..+|+.++..
T Consensus 146 l~~~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~--~~~a~~~~K~~l~~~ 214 (257)
T PRK07658 146 LPRYVG-KAKALEMMLTSEPITGAEALKWGLVNGVFPE-ETLLDDAKKLAKKIAGK--SPATTRAVLELLQTT 214 (257)
T ss_pred HHHHhC-HHHHHHHHHcCCCcCHHHHHHcCCcCeecCh-hHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 667898 8888999999999999999999999999985 89999999999999987 578999999998754
No 51
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.36 E-value=2.4e-12 Score=95.89 Aligned_cols=71 Identities=17% Similarity=0.296 Sum_probs=63.6
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+..++| +..+++++|||++|+|+||+++||||+++|+ +++++++.++|++++... +|.++..+|+.++..
T Consensus 159 ~l~~~ig-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~-~p~a~~~~K~~l~~~ 229 (272)
T PRK06210 159 ILPRLVG-HANALDLLLSARTFYAEEALRLGLVNRVVPP-DELMERTLAYAEDLARNV-SPASMAVIKRQLYED 229 (272)
T ss_pred hhHhhhC-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhc
Confidence 3667888 8889999999999999999999999999986 789999999999999742 578999999999865
No 52
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.35 E-value=3.1e-12 Score=96.64 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=63.2
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
+..++| +..+++++|||++|+|+||+++||||+++|+ +++.+.+.+++++++.. ++.++..+|+.++..
T Consensus 168 l~~~iG-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~~~~~ 236 (288)
T PRK08290 168 HPWELG-PRKAKELLFTGDRLTADEAHRLGMVNRVVPR-DELEAETLELARRIAAM--PPFGLRLTKRAVNQT 236 (288)
T ss_pred HHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 456799 8889999999999999999999999999985 78999999999999988 688999999998754
No 53
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.34 E-value=3.6e-12 Score=94.52 Aligned_cols=70 Identities=14% Similarity=0.249 Sum_probs=63.9
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| ++.+++++|||++|+|+||+++||||+++|+ +++++.+.+++++++.. ++.++..+|+.++..
T Consensus 148 ~l~~~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~--~~~a~~~~K~~l~~~ 217 (260)
T PRK07657 148 RLPRLIG-VGRAKELIYTGRRISAQEAKEIGLVEFVVPA-HLLEEKAIEIAEKIASN--GPIAVRQAKEAISNG 217 (260)
T ss_pred HHHHHhC-HHHHHHHHHhCCCCCHHHHHHcCCCCeecCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHh
Confidence 3677898 8889999999999999999999999999985 89999999999999988 688999999998754
No 54
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.34 E-value=3.7e-12 Score=94.38 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=63.8
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..++++++||++++|+||+++||||+++|+ +++++.|.+++++++.. +|.++..+|+.++..
T Consensus 148 ~l~~~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 217 (260)
T PRK05809 148 RLARIVG-PGKAKELIYTGDMINAEEALRIGLVNKVVEP-EKLMEEAKALANKIAAN--APIAVKLCKDAINRG 217 (260)
T ss_pred HHHHHhC-HHHHHHHHHhCCCCCHHHHHHcCCCCcccCh-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 3667898 8889999999999999999999999999985 89999999999999988 688999999998754
No 55
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.34 E-value=3.5e-12 Score=94.26 Aligned_cols=69 Identities=20% Similarity=0.191 Sum_probs=62.8
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLR 75 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~ 75 (97)
.+...+| +..+++++++|++|+|+||++|||||+++|+ +++.+++.++|++++.. +|.++..+|+.++.
T Consensus 148 ~l~~~~g-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~--~~~a~~~~K~~l~~ 216 (251)
T PRK06023 148 LAPRLMG-HQRAFALLALGEGFSAEAAQEAGLIWKIVDE-EAVEAETLKAAEELAAK--PPQALQIARDLMRG 216 (251)
T ss_pred HHHHHHh-HHHHHHHHHhCCCCCHHHHHHcCCcceeeCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHh
Confidence 3567788 8888999999999999999999999999985 88999999999999988 68899999999864
No 56
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.34 E-value=3.5e-12 Score=96.46 Aligned_cols=71 Identities=23% Similarity=0.284 Sum_probs=63.6
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +.++++++|||++|+|+||+++||||+++|+ ++++++|.++|++++.+. +|.++..+|+.++..
T Consensus 164 ~l~r~vG-~~~A~~llltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~i~~~~-~~~a~~~~K~~l~~~ 234 (296)
T PRK08260 164 FLPRLVG-LQTALEWVYSGRVFDAQEALDGGLVRSVHPP-DELLPAARALAREIADNT-SPVSVALTRQMMWRM 234 (296)
T ss_pred hHHHhhC-HHHHHHHHHcCCccCHHHHHHCCCceeecCH-HHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhc
Confidence 3677899 8889999999999999999999999999985 799999999999999742 578999999998754
No 57
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.34 E-value=4.3e-12 Score=93.71 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=61.9
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +.++++++|||++|+|+||++|||||+++ +++++++.++|++++.. +|.++..+|+.++..
T Consensus 146 ~l~~~~G-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv---~~l~~~a~~~a~~la~~--~~~a~~~~K~~~~~~ 213 (249)
T PRK05870 146 MLQRAVG-PQVARAALLFGMRFDAEAAVRHGLALMVA---DDPVAAALELAAGPAAA--PRELVLATKASMRAT 213 (249)
T ss_pred eHHhhhC-HHHHHHHHHhCCccCHHHHHHcCCHHHHH---hhHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhc
Confidence 3677898 88899999999999999999999999999 36999999999999988 689999999998754
No 58
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.33 E-value=5.3e-12 Score=93.73 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=63.1
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+..++| +..+++++|||++|+|+||+++||||+++ + +++.+++.+++++++.+ ++.++..+|+.++..
T Consensus 149 ~L~~~vg-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~-~~~~~~a~~~a~~l~~~--~~~a~~~~K~~l~~~ 217 (260)
T PRK07659 149 FLQKRVG-ENKAKQIIWEGKKLSATEALDLGLIDEVI-G-GDFQTAAKQKISEWLQK--PLKAMIETKQIYCEL 217 (260)
T ss_pred hHHHhcC-HHHHHHHHHhCCccCHHHHHHcCChHHHh-h-hHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhh
Confidence 4778899 88899999999999999999999999999 5 68999999999999988 688999999988754
No 59
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=6.7e-12 Score=92.70 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=63.6
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++++|++|+|+||+++||||+++|+ +++++.|.++|++++.. ++.++..+|+.++..
T Consensus 147 ~l~~~~G-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~i~~~--~~~a~~~~K~~l~~~ 216 (259)
T PRK06688 147 LLPRLIG-RARAAEMLLLGEPLSAEEALRIGLVNRVVPA-AELDAEADAQAAKLAAG--PASALRYTKRAINAA 216 (259)
T ss_pred HHHHHhh-HHHHHHHHHhCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhh
Confidence 3677898 8889999999999999999999999999985 78999999999999987 678999999998764
No 60
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=6.8e-12 Score=93.26 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=61.4
Q ss_pred hhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 5 ECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 5 r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
..++| +..+++|+|||++|+|+||+++||||+++|+ +++.+.+.+++++++.. +|.++..+|+.++..
T Consensus 152 ~~~vG-~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~~~~~a~~l~~~--~~~a~~~~K~~l~~~ 219 (262)
T PRK07468 152 VARMG-EANARRVFMSARLFDAEEAVRLGLLSRVVPA-ERLDAAVEAEVTPYLSC--APGAVAAAKALVRAL 219 (262)
T ss_pred Hhhcc-HHHHHHHHHhCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhh
Confidence 35598 8889999999999999999999999999985 78999999999999988 688999999988643
No 61
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.29 E-value=4e-12 Score=92.98 Aligned_cols=70 Identities=24% Similarity=0.404 Sum_probs=64.9
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|+|++|+|+||+++||||+++|+ +++.+.+.+++++++.. ++.++..+|+.++..
T Consensus 141 ~l~r~~g-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~--~~~a~~~~K~~~~~~ 210 (245)
T PF00378_consen 141 RLPRLIG-PSRARELLLTGEPISAEEALELGLVDEVVPD-EELDEEALELAKRLAAK--PPSALRATKKALNRA 210 (245)
T ss_dssp HHHHHHH-HHHHHHHHHHTCEEEHHHHHHTTSSSEEESG-GGHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHH
T ss_pred ccceeee-cccccccccccccchhHHHHhhcceeEEcCc-hhhhHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 5778898 8889999999999999999999999999996 67999999999999998 689999999999876
No 62
>PRK08788 enoyl-CoA hydratase; Validated
Probab=99.27 E-value=1.1e-11 Score=94.23 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=59.7
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLR 75 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~ 75 (97)
.+..++| +.++++++|||++|+|+||++|||||+++|+ +++.+++.+++++++.++.++.+...+|+.++.
T Consensus 172 ~l~~~vG-~~~A~ellltG~~l~A~eA~~~GLV~~vv~~-~el~~~a~~~a~~ia~~~~~~~a~k~~~~~~~~ 242 (287)
T PRK08788 172 FLARRVG-PKLAEELILSGKLYTAEELHDMGLVDVLVED-GQGEAAVRTFIRKSKRKLNGWRAMLRARRRVNP 242 (287)
T ss_pred HHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHHHHHHHHHHHhcCccHHHHHHHHHHhhcc
Confidence 4778999 8889999999999999999999999999986 789999999999999764345555556655543
No 63
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=3.7e-11 Score=88.97 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=61.6
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|||++|+|+||+++||||+++++ +.+++.++|++++.. +|.++..+|+.++..
T Consensus 153 ~l~~~~g-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~---~~~~a~~~a~~l~~~--~~~~~~~~K~~l~~~ 220 (262)
T PRK07509 153 SLRGLVR-KDVARELTYTARVFSAEEALELGLVTHVSDD---PLAAALALAREIAQR--SPDAIAAAKRLINRS 220 (262)
T ss_pred HHHHHhC-HHHHHHHHHcCCCcCHHHHHHcCChhhhhch---HHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 5788899 8889999999999999999999999999953 689999999999988 688999999998764
No 64
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=99.19 E-value=8.3e-11 Score=87.00 Aligned_cols=71 Identities=24% Similarity=0.345 Sum_probs=63.5
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLREV 77 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~~ 77 (97)
.+...+| ...++++++||++|+++||+++|||++++++.+++++.+.+++++++. +|.++..+|+.++...
T Consensus 149 ~l~r~~G-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~---~~~a~~~~k~~~~~~~ 219 (257)
T COG1024 149 RLPRLLG-RGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA---PPLALAATKRLVRAAL 219 (257)
T ss_pred HHHHhcC-HHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhh
Confidence 4567788 888999999999999999999999999998657999999999999997 5789999999988653
No 65
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.18 E-value=8.7e-11 Score=87.11 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=58.4
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHH-HHHHhcCCCChhHHHHHHHHHhHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKL-GEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~l-A~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
.+.+++| +..+++++|||++|+|+||++||||++++|+ ++ +.+.++ +++++.. +|.++..+|+.++..
T Consensus 139 ~l~~~vg-~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-~~--~~a~~~~a~~la~~--~p~a~~~~K~~l~~~ 207 (251)
T TIGR03189 139 LLPERMG-RVAAEDLLYSGRSIDGAEGARIGLANAVAED-PE--NAALAWFDEHPAKL--SASSLRFAVRAARLG 207 (251)
T ss_pred HHHHHhC-HHHHHHHHHcCCCCCHHHHHHCCCcceecCc-HH--HHHHHHHHHHHHhC--CHHHHHHHHHHHHhh
Confidence 4778899 8889999999999999999999999999975 33 577787 6889988 678999999988754
No 66
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.16 E-value=1.2e-10 Score=86.37 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=58.2
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLR 75 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~ 75 (97)
.+..++| +..+++++|+|++|+|+||++|||||+++|+. +. .+.+++++++.. +|.++..+|+.++.
T Consensus 146 ~l~~~vg-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~-~~--~~~~~a~~l~~~--~p~a~~~~K~~~~~ 212 (255)
T PRK07112 146 FLIRRIG-TQKAHYMTLMTQPVTAQQAFSWGLVDAYGANS-DT--LLRKHLLRLRCL--NKAAVARYKSYAST 212 (255)
T ss_pred HHHHHhC-HHHHHHHHHhCCcccHHHHHHcCCCceecCcH-HH--HHHHHHHHHHhC--CHHHHHHHHHHHHH
Confidence 4677899 88899999999999999999999999999863 42 467899999988 68899999998864
No 67
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.14 E-value=1.6e-10 Score=85.30 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=57.7
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLR 75 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~ 75 (97)
.+..++| +..+++++|||++|+|+||+++||||++++ ++++.++|++++.+ +|.++..+|+.++.
T Consensus 137 ~l~~~~G-~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~-----~~~a~~~a~~l~~~--~~~a~~~~K~~l~~ 201 (243)
T PRK07854 137 RLSSLVG-GGRARAMLLGAEKLTAEQALATGMANRIGT-----LADAQAWAAEIAGL--APLALQHAKRVLND 201 (243)
T ss_pred HHHHHhC-HHHHHHHHHcCCCcCHHHHHHCCCcccccC-----HHHHHHHHHHHHhC--CHHHHHHHHHHHHc
Confidence 4678899 888999999999999999999999999974 23889999999988 68899999999874
No 68
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.13 E-value=1.5e-10 Score=94.78 Aligned_cols=68 Identities=16% Similarity=0.031 Sum_probs=60.7
Q ss_pred hhhh-hCcHHHHHHH--HhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 045617 4 IECK-VGNPTARREM--VLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLR 75 (97)
Q Consensus 4 ~r~k-ig~~~~a~el--~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~ 75 (97)
+..+ +| ++.++++ ++||++|+|+||++||||++++|+ +++++++.++|++++++ +|.+++.+|+.++.
T Consensus 430 L~r~~vG-~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~ia~~--~p~a~~~~K~~l~~ 500 (550)
T PRK08184 430 LARRFYG-EPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD-IDWEDEVRIALEERASL--SPDALTGMEANLRF 500 (550)
T ss_pred hHHHhcC-hHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh-HHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHh
Confidence 4445 79 7778887 599999999999999999999986 79999999999999998 68999999999865
No 69
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.13 E-value=6.9e-11 Score=88.12 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=64.8
Q ss_pred hhhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 2 ALIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 2 al~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
+.+-+.+| ...|||+.+.+|.|+|+||+++|+||.|+|- ++|-+++++++++|..+ ||.+++.+|-.+|.+
T Consensus 166 ~ylar~VG-qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~-~~LE~e~v~W~~E~l~k--SP~AlR~LK~Afnad 236 (282)
T COG0447 166 SYLARIVG-QKKAREIWFLCRQYDAEEALDMGLVNTVVPH-ADLEKETVQWAREMLAK--SPTALRMLKAAFNAD 236 (282)
T ss_pred HHHHHHhh-hhhhHHhhhhhhhccHHHHHhcCceeeeccH-HHHHHHHHHHHHHHHhc--ChHHHHHHHHHhcCC
Confidence 45677898 8889999999999999999999999999985 89999999999999999 788999999888755
No 70
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=99.11 E-value=5.9e-11 Score=88.96 Aligned_cols=69 Identities=23% Similarity=0.402 Sum_probs=64.7
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVL 74 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~ 74 (97)
+...+|+..-++|+.||+|+|+|.||++.|||.+++|+-++|++.++.+|..|+++ +|.++..+|..|+
T Consensus 178 lpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~K--SpvaVqgTK~~L~ 246 (292)
T KOG1681|consen 178 LPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASK--SPVAVQGTKENLL 246 (292)
T ss_pred hhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccC--CceeeechHHHHH
Confidence 56678988999999999999999999999999999999999999999999999999 7899999998874
No 71
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.11 E-value=1.9e-10 Score=94.07 Aligned_cols=68 Identities=16% Similarity=0.001 Sum_probs=60.0
Q ss_pred hhhhh-CcHHHH--HHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 045617 4 IECKV-GNPTAR--REMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLR 75 (97)
Q Consensus 4 ~r~ki-g~~~~a--~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~ 75 (97)
+...+ | ..++ ++++|||++|+|+||++||||++++|+ +++++++.++|++++++ +|.+++.+|+.++.
T Consensus 426 L~~~v~G-~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~--~p~a~~~~K~~l~~ 496 (546)
T TIGR03222 426 LATRFYA-EPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD-IDWEDEIRIALEERASF--SPDALTGLEANLRF 496 (546)
T ss_pred HHHHhcC-chhHHHHHHHHhCCCCCHHHHHHcCCcccccCc-hHHHHHHHHHHHHHHhc--CHHHHHHHHHHHhh
Confidence 45566 7 6666 569999999999999999999999986 78999999999999998 68999999988764
No 72
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=99.05 E-value=3.9e-10 Score=83.66 Aligned_cols=65 Identities=25% Similarity=0.298 Sum_probs=57.7
Q ss_pred hhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 045617 7 KVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLREV 77 (97)
Q Consensus 7 kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~~ 77 (97)
+++ +..+++++|+|++|+|+||+++||||++++ ++.+.+.++++++++. ++.++..+|+.++...
T Consensus 155 ~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~---~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~~ 219 (260)
T PRK07827 155 RLS-PRAAARYYLTGEKFGAAEAARIGLVTAAAD---DVDAAVAALLADLRRG--SPQGLAESKALTTAAV 219 (260)
T ss_pred hhh-HHHHHHHHHhCCccCHHHHHHcCCcccchH---HHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhhh
Confidence 456 567899999999999999999999999973 4899999999999988 6889999999998754
No 73
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.02 E-value=1.1e-09 Score=80.84 Aligned_cols=65 Identities=14% Similarity=0.211 Sum_probs=56.3
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
+...+| + ++++++|||++|+|+||+++||||. ++ +++++|.++|++++.. +|.++..+|+.++..
T Consensus 141 l~~~~g-~-~a~~lll~g~~~~a~eA~~~Glv~~-~~---~~~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 205 (248)
T PRK06072 141 LLKLTG-Q-RFYEILVLGGEFTAEEAERWGLLKI-SE---DPLSDAEEMANRISNG--PFQSYIAAKRMINLV 205 (248)
T ss_pred HHHHhh-H-HHHHHHHhCCccCHHHHHHCCCccc-cc---hHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 556677 6 6799999999999999999999995 32 4789999999999987 688999999999765
No 74
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.96 E-value=1.7e-09 Score=83.66 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=55.4
Q ss_pred HHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHH-------------------------------------------
Q 045617 12 TARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKA------------------------------------------- 48 (97)
Q Consensus 12 ~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~------------------------------------------- 48 (97)
..+++++|||++|+|+||+++|||++++|+ +++.+.
T Consensus 158 ~~a~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 236 (342)
T PRK05617 158 ALGTYLALTGARISAADALYAGLADHFVPS-ADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECF 236 (342)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCH-HHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHh
Confidence 468999999999999999999999999985 788776
Q ss_pred -------------------HHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 49 -------------------AVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 49 -------------------A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
|.++|++++.+ +|.++..+|+.++..
T Consensus 237 ~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~--sp~a~~~~k~~l~~~ 281 (342)
T PRK05617 237 AGDTVEDIIAALEADGGEFAAKTADTLRSR--SPTSLKVTLEQLRRA 281 (342)
T ss_pred CCCCHHHHHHHHHhccHHHHHHHHHHHHhC--CcHHHHHHHHHHHHh
Confidence 88999999988 688999999998753
No 75
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.83 E-value=1.1e-08 Score=85.71 Aligned_cols=51 Identities=24% Similarity=0.392 Sum_probs=47.1
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEE 55 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~ 55 (97)
.+.+.+| +..+++|+|||++|+|+||++|||||+++|+ ++++++|.++|++
T Consensus 154 ~L~r~vG-~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~~A~~ 204 (708)
T PRK11154 154 RLPRLIG-VSTALDMILTGKQLRAKQALKLGLVDDVVPH-SILLEVAVELAKK 204 (708)
T ss_pred HHHhhcC-HHHHHHHHHhCCcCCHHHHHHCCCCcEecCh-HHHHHHHHHHHHh
Confidence 3667898 8889999999999999999999999999986 7999999999998
No 76
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=98.82 E-value=5.2e-09 Score=85.73 Aligned_cols=69 Identities=12% Similarity=0.027 Sum_probs=57.4
Q ss_pred hhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCCh-----hHHHHHHHHHhHH
Q 045617 6 CKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDG-----HVYAQNRVVVLRE 76 (97)
Q Consensus 6 ~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~-----~a~~~~K~~l~~~ 76 (97)
.++| ...+++++|||++|+|+||++|||||++||+ +++++++.++|++++..++.| +.+..+++++..+
T Consensus 178 ~~vg-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~p~~~~~~~~~~~~~~~~~~~~ 251 (546)
T TIGR03222 178 RRVR-RDHADIFCTIEEGVRGKRAKEWRLVDEVVKP-SQFDAAIAERAAELAAQSDRPADAKGVQLTPLERTIDED 251 (546)
T ss_pred chhC-HHHHHHHHHcCCCccHHHHHHcCCceEEeCh-HHHHHHHHHHHHHHHhCCCCCcCCCceeeeehhhhcccC
Confidence 4677 7788999999999999999999999999985 789999999999999886544 4455566655433
No 77
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.82 E-value=1e-08 Score=85.90 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=50.0
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcC
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNR 59 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~ 59 (97)
+.+++| ...+++++|||++|+|+||+++||||+++|+ ++++++|.++|++++.+
T Consensus 154 L~rlvG-~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~ 207 (715)
T PRK11730 154 LPRLIG-ADNALEWIAAGKDVRAEDALKVGAVDAVVAP-EKLQEAALALLKQAIAG 207 (715)
T ss_pred HHHhcC-HHHHHHHHHcCCcCCHHHHHHCCCCeEecCH-HHHHHHHHHHHHHHhhc
Confidence 567898 8889999999999999999999999999985 89999999999999965
No 78
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.82 E-value=1e-08 Score=80.46 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=34.6
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHH
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVK 47 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~ 47 (97)
+.+.+| . .+++++|||++|+|+||+++|||+++||+ +++++
T Consensus 157 L~rl~g-~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~ 197 (379)
T PLN02874 157 LSRLPG-H-LGEYLALTGARLNGKEMVACGLATHFVPS-EKLPE 197 (379)
T ss_pred HHhhhH-H-HHHHHHHcCCcccHHHHHHcCCccEEeCH-HHHHH
Confidence 445555 5 67999999999999999999999999985 67765
No 79
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.77 E-value=2.2e-08 Score=83.77 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=46.3
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGE 54 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~ 54 (97)
.+.+.+| ...+++++|||++|+|+||+++||||+++|+ ++++++|.++|+
T Consensus 149 ~L~r~vG-~~~A~~llltG~~~~a~eA~~~GLV~~vv~~-~~l~~~a~~~A~ 198 (699)
T TIGR02440 149 RLPRLIG-VSTALDMILTGKQLRAKQALKLGLVDDVVPQ-SILLDTAVEMAL 198 (699)
T ss_pred HHHHhcC-HHHHHHHHHcCCcCCHHHHHhCCCCcEecCh-hHHHHHHHHHHH
Confidence 3677898 8889999999999999999999999999986 799999999998
No 80
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.77 E-value=1.9e-08 Score=78.93 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=64.5
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHH------------HHHHHHHHHHHhcCCCChhHHHHHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEET------------VKAAVKLGEELVNRKWDGHVYAQNR 70 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~l------------l~~A~~lA~~la~~~~~~~a~~~~K 70 (97)
.+...+| ...+++++++|++|+|+||+++||||+++|+ +++ .+..-++++.+.+.+..+......|
T Consensus 175 rLprlvG-~~rA~~llltGe~~sA~EA~~~GLVd~VVp~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k 252 (360)
T TIGR03200 175 FLPLMIG-CEQAMVSGTLCEPWSAHKAKRLGIIMDVVPA-LKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGK 252 (360)
T ss_pred HHHHhhC-HHHHHHHHHhCCcCcHHHHHHcCChheecCc-hhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHH
Confidence 3667898 8889999999999999999999999999986 677 6677777888888765555777777
Q ss_pred HHHhHHHHHhccCchhhhhh
Q 045617 71 VVVLREVLDHLDYDETVDQL 90 (97)
Q Consensus 71 ~~l~~~~l~~~~~~~~~~~~ 90 (97)
..+.....+.-..++++++|
T Consensus 253 ~~~~~~~~~~~~l~~~~~~l 272 (360)
T TIGR03200 253 ELIKQGTIDLSLLDEAVEAL 272 (360)
T ss_pred HHHhcccchHhHHHHHHHHH
Confidence 66544323333344454444
No 81
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.76 E-value=1.1e-08 Score=83.80 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=49.5
Q ss_pred hhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCC
Q 045617 6 CKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKW 61 (97)
Q Consensus 6 ~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~ 61 (97)
.++| +..+++++|||++|+|+||++|||||++||+ +++.+++.++|++++.+++
T Consensus 182 ~~vg-~~~A~~llltG~~i~AeeA~~~GLVd~vv~~-d~l~~~a~~~A~~ia~~~~ 235 (550)
T PRK08184 182 RKVR-RDLADIFCTIEEGVRGKRAVDWRLVDEVVKP-SKFDAKVAERAAELAAASD 235 (550)
T ss_pred hhcC-HHHHHHHHHhCCcccHHHHHHcCCccEeeCH-HHHHHHHHHHHHHHHhCCC
Confidence 5687 8888999999999999999999999999985 8999999999999998754
No 82
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.74 E-value=2.5e-08 Score=79.13 Aligned_cols=66 Identities=18% Similarity=0.109 Sum_probs=56.4
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhH
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLR 75 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~ 75 (97)
+.+.+| . .+++++|||++++|+||+++|||++++|+ +++ +++.+++.+++.. +|.++..+|+.++.
T Consensus 185 L~rl~G-~-~a~~L~LTG~~i~A~eA~~~GLv~~vVp~-~~l-~~~~~~~~~i~~~--~p~av~~~k~~~~~ 250 (401)
T PLN02157 185 LSHLPG-R-LGEYLGLTGLKLSGAEMLACGLATHYIRS-EEI-PVMEEQLKKLLTD--DPSVVESCLEKCAE 250 (401)
T ss_pred HHHhhh-H-HHHHHHHcCCcCCHHHHHHcCCceEEeCH-hHH-HHHHHHHHHHHcC--CHHHHHHHHHHHhc
Confidence 555666 5 57999999999999999999999999986 676 7888999999886 57889999987753
No 83
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=98.70 E-value=7.7e-08 Score=72.70 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=66.2
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHhc
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLREVLDHL 81 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~~l~~~ 81 (97)
+..++| ...|.|++|.|++++|+||++.|||++++++ ..+-+.+++-++++++. +|.++..+|+.++....+.+
T Consensus 159 ~p~imG-~~~A~E~ll~~~kltA~Ea~~~glVskif~~-~tf~~~v~~~ikq~s~l--~p~sl~~~K~L~rs~~k~~l 232 (266)
T KOG0016|consen 159 LPKIMG-SASANEMLLFGEKLTAQEACEKGLVSKIFPA-ETFNEEVLKKIKQYSKL--SPESLLGMKKLLRSNIKEEL 232 (266)
T ss_pred ehHhhc-hhhHHHHHHhCCcccHHHHHhcCchhhhcCh-HHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHH
Confidence 567898 8889999999999999999999999999986 79999999999999986 78999999999877665544
No 84
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.67 E-value=7.2e-08 Score=71.72 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=60.0
Q ss_pred hhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHH
Q 045617 6 CKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLREV 77 (97)
Q Consensus 6 ~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~~ 77 (97)
+.++ ..++.+|+|||.+++++||+.-|||.++||+ +|+..++.+++..+..+ ++.+...-|+-.|...
T Consensus 178 Ravp-Rkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~-~el~~e~~~i~~~i~~~--srav~slgk~f~y~q~ 245 (287)
T KOG1682|consen 178 RAVP-RKVAAYMLMTGLPITGEEALISGLVSKVVPA-EELDKEIEEITNAIKAK--SRAVISLGKEFYYKQL 245 (287)
T ss_pred hhcc-hhHHHHHHHhCCCCchHHHHHhhhhhhcCCH-HHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHH
Confidence 4476 7788999999999999999999999999995 89999999999999887 6778888888777654
No 85
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.66 E-value=3.6e-08 Score=69.13 Aligned_cols=51 Identities=33% Similarity=0.543 Sum_probs=46.4
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHH
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEE 55 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~ 55 (97)
.+.+++| +..+++++++|++++|+||+++|||++++++ +++.+.+.+++++
T Consensus 144 ~l~~~~g-~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~-~~l~~~a~~~a~~ 194 (195)
T cd06558 144 RLPRLVG-PARARELLLTGRRISAEEALELGLVDEVVPD-EELLAAALELARR 194 (195)
T ss_pred HHHHHhC-HHHHHHHHHcCCccCHHHHHHcCCCCeecCh-hHHHHHHHHHHhh
Confidence 4677888 8888999999999999999999999999986 8899999998875
No 86
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.46 E-value=4.2e-07 Score=71.64 Aligned_cols=65 Identities=14% Similarity=0.025 Sum_probs=52.3
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHh
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVL 74 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~ 74 (97)
+.+.+| . .+++++|||++++|+||+++|||++++|+ +++.+.+.+++ +++.+ +|.+...+|+.+.
T Consensus 157 L~rl~G-~-~~~~l~LTG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~la-~~~~~--~p~~~~~~~~~~~ 221 (381)
T PLN02988 157 LSRLPG-F-FGEYVGLTGARLDGAEMLACGLATHFVPS-TRLTALEADLC-RIGSN--DPTFASTILDAYT 221 (381)
T ss_pred HHHHHH-H-HHHHHHHcCCCCCHHHHHHcCCceEecCH-hHHHHHHHHHH-Hhhcc--CHHHHHHHHHHhh
Confidence 444455 4 57899999999999999999999999985 78998888888 66665 4666777777654
No 87
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.45 E-value=3.3e-07 Score=77.29 Aligned_cols=55 Identities=31% Similarity=0.361 Sum_probs=47.4
Q ss_pred hhhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCCh------------HHHHHHHHHHHHHHhc
Q 045617 3 LIECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSA------------EETVKAAVKLGEELVN 58 (97)
Q Consensus 3 l~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~------------~~ll~~A~~lA~~la~ 58 (97)
.+.+.+| ...+++++|||++|+|+||++|||||+++|+. +++++.|.+++++++.
T Consensus 161 rLprliG-~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~ 227 (737)
T TIGR02441 161 RLPKLTG-VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLAN 227 (737)
T ss_pred hHHHhhC-HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhc
Confidence 3567788 88889999999999999999999999999851 5688999999988764
No 88
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.43 E-value=3.3e-07 Score=68.65 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=59.9
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCC---hHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDS---AEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~---~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
+.+.+| +..++|++||||++++.||...|+||.++.. +|.....|+++|+++..+ .|.++...|..++..
T Consensus 176 LpR~vg-~alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~--gPiavr~aKlAIn~G 248 (291)
T KOG1679|consen 176 LPRIVG-VALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQ--GPIAVRLAKLAINLG 248 (291)
T ss_pred hHHHHh-HHHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccC--CchhhhHHHHHhccC
Confidence 456688 8899999999999999999999999999953 246888899999999988 478899999776654
No 89
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.42 E-value=3.9e-07 Score=76.60 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=47.7
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhc
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVN 58 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~ 58 (97)
+.+.+| ...++++++||++++|+||+++||||+++|+ +++++.|.+++.++..
T Consensus 154 L~rliG-~~~A~~llltG~~~~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~~~~ 206 (714)
T TIGR02437 154 LPRVIG-ADNALEWIASGKENRAEDALKVGAVDAVVTA-DKLGAAALQLLKDAIN 206 (714)
T ss_pred HHHHhC-HHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh-hHHHHHHHHHHHHHhh
Confidence 566788 8888999999999999999999999999985 7899999999988553
No 90
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=98.17 E-value=1.7e-06 Score=61.61 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=36.6
Q ss_pred hhhhhCc-HHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHH
Q 045617 4 IECKVGN-PTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKA 48 (97)
Q Consensus 4 ~r~kig~-~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~ 48 (97)
+.+++|. +..+++++++|++|+|+||+++||||+++++.+++++.
T Consensus 127 l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 127 LAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred HHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence 4456662 36789999999999999999999999999874466644
No 91
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.83 E-value=6.1e-05 Score=60.12 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=39.6
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhc
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVN 58 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~ 58 (97)
+.+..| . .+++++|||++++|+||+++|||+.++|+ +++ +.+.+.+.++..
T Consensus 190 L~rl~g-~-~g~~L~LTG~~i~a~eA~~~GLa~~~v~~-~~l-~~l~~~l~~~~~ 240 (407)
T PLN02851 190 LSRLPG-Y-LGEYLALTGQKLNGVEMIACGLATHYCLN-ARL-PLIEERLGKLLT 240 (407)
T ss_pred HHHhcC-H-HHHHHHHhCCcCCHHHHHHCCCceeecCH-hhH-HHHHHHHHhhcc
Confidence 334444 4 47999999999999999999999999986 555 666676666544
No 92
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=97.13 E-value=0.00036 Score=48.97 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=31.6
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHH
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVK 47 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~ 47 (97)
+...++++.+|..|+|+||++.||||++.+ .+++.+
T Consensus 139 ~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~-~~e~~~ 174 (177)
T cd07014 139 PEQQIDKIAQGGVWTGQDAKANGLVDSLGS-FDDAVA 174 (177)
T ss_pred HHHhHHHhcCcCeEeHHHHHHcCCcccCCC-HHHHHH
Confidence 677899999999999999999999999997 466654
No 93
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=96.53 E-value=0.0031 Score=52.33 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=35.2
Q ss_pred HHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcC
Q 045617 14 RREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNR 59 (97)
Q Consensus 14 a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~ 59 (97)
..+.+++|+.|+|+||+++||||++.. +++|++.|.++++.
T Consensus 484 ~v~~ia~Grv~tg~eA~~~GLVD~ig~-----~~~Ai~~a~~la~~ 524 (584)
T TIGR00705 484 QVDKVAQGRVWTGEDAVSNGLVDALGG-----LDEAVAKAAKLAHC 524 (584)
T ss_pred HHHHHHhCCCcCHHHHHHcCCcccCCC-----HHHHHHHHHHHcCC
Confidence 478889999999999999999999952 47788888888876
No 94
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=96.12 E-value=0.0048 Score=42.44 Aligned_cols=35 Identities=29% Similarity=0.247 Sum_probs=28.0
Q ss_pred hhhhhCc-HHHHHHHHhcccCCCHHHHHHccchhhh
Q 045617 4 IECKVGN-PTARREMVLKAAKLMAKEAVERGIIDAA 38 (97)
Q Consensus 4 ~r~kig~-~~~a~el~ltGrr~tA~EA~~~GlVd~v 38 (97)
+....|. +...++++.++..++++||+++||||++
T Consensus 125 ~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 125 YAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred HHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 4455653 4777888888888999999999999975
No 95
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=95.56 E-value=0.016 Score=41.36 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=32.6
Q ss_pred cHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHH
Q 045617 10 NPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVK 47 (97)
Q Consensus 10 ~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~ 47 (97)
++..+..++-....+|++||++.|+||.++++.++|+.
T Consensus 134 ~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll~ 171 (172)
T cd07015 134 NATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLK 171 (172)
T ss_pred CHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHhh
Confidence 36677888888899999999999999999998777664
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=95.29 E-value=0.012 Score=40.16 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=24.3
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhh
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAA 38 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v 38 (97)
+....+.+.+|..|+++||+++||||++
T Consensus 134 ~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 134 TEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred HHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 4556788889999999999999999975
No 97
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=94.88 E-value=0.045 Score=39.45 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=29.8
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHH
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVK 51 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~ 51 (97)
+...++ ++.|+.|++++|++.||||++.. .+++.+.+.+
T Consensus 166 ~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~-~~~~~~~~~~ 204 (207)
T TIGR00706 166 VEDVKK-FADGRVFTGRQALKLRLVDKLGT-EDDALKWLAE 204 (207)
T ss_pred HHHHHH-HhcCCcccHHHHHHcCCCcccCC-HHHHHHHHHH
Confidence 554444 47899999999999999999995 4666655443
No 98
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=94.67 E-value=0.029 Score=40.81 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=28.3
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcCChHH
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYDSAEE 44 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ 44 (97)
+....+++-.+..+||+||++.||||+++++.++
T Consensus 172 ~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~d 205 (207)
T PRK12553 172 VEKIRKDTDRDKWLTAEEAKDYGLVDQIITSYRD 205 (207)
T ss_pred HHHHHHHHhcCccccHHHHHHcCCccEEcCchhh
Confidence 5566777778899999999999999999986544
No 99
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=94.36 E-value=0.048 Score=39.53 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=29.8
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHH
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVK 47 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~ 47 (97)
+....+++-....+||+||+++||||+++++.+++..
T Consensus 158 ~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~~ 194 (197)
T PRK14512 158 LDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELEE 194 (197)
T ss_pred HHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhHh
Confidence 5556777777788899999999999999987666553
No 100
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=94.36 E-value=0.023 Score=39.12 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=28.9
Q ss_pred HHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHH
Q 045617 16 EMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKL 52 (97)
Q Consensus 16 el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~l 52 (97)
+-++.|+.|+|++|++.||||++.. .++++..+.+.
T Consensus 115 ~~~~~~~~~~~~~A~~~GLiD~i~~-~~~~~~~l~~~ 150 (154)
T PF01343_consen 115 EEIADGGVFTAQQALELGLIDEIGT-FDEAIARLAKL 150 (154)
T ss_dssp HCHHCCHEEEHHHHHHTTSSSEETS-HHHHHHHHHHH
T ss_pred HHHHhhccccHHHHHHcCchhhcCC-HHHHHHHHHHH
Confidence 4468999999999999999999985 46766655443
No 101
>PRK10949 protease 4; Provisional
Probab=93.77 E-value=0.091 Score=44.17 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=28.8
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHH
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKL 52 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~l 52 (97)
+...+ -+..|+.|+|++|++.||||++.. .++.++.|.++
T Consensus 500 ~~~v~-~ia~Grv~tg~~A~~~GLVD~lG~-~~~ai~~a~~~ 539 (618)
T PRK10949 500 PEQID-KIAQGHVWTGQDAKANGLVDSLGD-FDDAVAKAAEL 539 (618)
T ss_pred HHHHH-HHhcCCcccHHHHHHcCCCccCCC-HHHHHHHHHHH
Confidence 44434 467999999999999999999984 34444444443
No 102
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=93.77 E-value=0.074 Score=38.43 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=26.3
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHH
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETV 46 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll 46 (97)
+...++++ |+.|+|++|++.||||++.. .++++
T Consensus 178 ~~~~~~~~--~~~~~~~~Al~~gLvD~i~~-~~~~~ 210 (214)
T cd07022 178 AAAVRATE--GGVFRGQEAVAAGLADAVGT-LDDAL 210 (214)
T ss_pred HHHHHHhh--cCeeeHHHHHHcCCCcccCC-HHHHH
Confidence 55556666 99999999999999999985 35544
No 103
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=93.43 E-value=0.079 Score=36.97 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=22.7
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhh
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAA 38 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v 38 (97)
....++++-.+..|+|+||++.||||++
T Consensus 135 ~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 135 EEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 5566677777777799999999999974
No 104
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=93.10 E-value=0.11 Score=37.53 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=27.3
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHH
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVK 47 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~ 47 (97)
+...+. +..|+.|+++||++.||||++.. .++++.
T Consensus 174 ~~~l~~-~~~~~~~~~~~A~~~GLvD~i~~-~~~~~~ 208 (211)
T cd07019 174 PEQIDK-IAQGHVWTGQDAKANGLVDSLGD-FDDAVA 208 (211)
T ss_pred HHHHHH-hcCCcEEeHHHHHHcCCcccCCC-HHHHHH
Confidence 554344 67899999999999999999985 455554
No 105
>PRK11778 putative inner membrane peptidase; Provisional
Probab=92.90 E-value=0.1 Score=40.88 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=30.0
Q ss_pred HHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHH
Q 045617 15 REMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKL 52 (97)
Q Consensus 15 ~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~l 52 (97)
.+-+.+|+.|+|++|++.||||++.. .++++..+.+.
T Consensus 260 ~~~va~G~v~~g~~Al~~GLVD~Ig~-~dd~i~~~~~~ 296 (330)
T PRK11778 260 IDKVATGEHWYGQQALELGLVDEIQT-SDDYLLELMKE 296 (330)
T ss_pred HHHHHhCCCcCHHHHHHCCCCCcCCC-HHHHHHHHHhc
Confidence 34567899999999999999999997 47777666554
No 106
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=92.58 E-value=0.12 Score=36.21 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=24.2
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhh
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAA 38 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v 38 (97)
.....+++-.+..++++||+++||||++
T Consensus 144 ~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 144 LEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 4666778888999999999999999975
No 107
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=91.69 E-value=0.15 Score=37.09 Aligned_cols=31 Identities=23% Similarity=0.108 Sum_probs=25.8
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcCC
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYDS 41 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~ 41 (97)
.....+.+-.-..+||+||+++||||++.++
T Consensus 166 ~e~i~~~~~r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 166 LWVISEDMERDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred HHHHHHHhhcCccCCHHHHHHcCCCcEEeec
Confidence 4555677777788899999999999999864
No 108
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=91.39 E-value=0.26 Score=35.86 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=27.4
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHH
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKA 48 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~ 48 (97)
+... +-+..|+.|+|++|++.||||++.. .+++.+.
T Consensus 184 ~~~~-~~~~~~~~~~~~~A~~~GLvD~i~~-~~e~~~~ 219 (222)
T cd07018 184 PDAL-EALIDLGGDSAEEALEAGLVDGLAY-RDELEAR 219 (222)
T ss_pred HHHH-HHHHHcCCcHHHHHHHCCCCCcCCc-HHHHHHH
Confidence 4443 3445699999999999999999995 4666544
No 109
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=90.58 E-value=0.23 Score=35.84 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=26.1
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcCC
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYDS 41 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~ 41 (97)
+....+++-.+..++|+||++.||||+++.+
T Consensus 166 ~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 166 LEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence 5566677777888999999999999999864
No 110
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=90.49 E-value=0.24 Score=35.59 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=25.7
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcC
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYD 40 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~ 40 (97)
+....+.+-.+..+||+||+++||||++..
T Consensus 161 ~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 161 LEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred HHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 566777788888899999999999999863
No 111
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=90.39 E-value=0.29 Score=34.85 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.2
Q ss_pred CCCHHHHHHccchhhhcCChHHHHH
Q 045617 23 KLMAKEAVERGIIDAAYDSAEETVK 47 (97)
Q Consensus 23 r~tA~EA~~~GlVd~v~~~~~~ll~ 47 (97)
.+|++||++.|++|.++++.++|+.
T Consensus 153 ~lta~eA~~~g~~d~ia~~~~~ll~ 177 (178)
T cd07021 153 TLTADEALKVGYAEGIAGSLDELLV 177 (178)
T ss_pred eeCHHHHHHhCCeEEEECCHHHHhh
Confidence 6999999999999999998777664
No 112
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=90.34 E-value=0.13 Score=36.05 Aligned_cols=31 Identities=35% Similarity=0.424 Sum_probs=25.5
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcCC
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYDS 41 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~ 41 (97)
+....+++-...-++++||+++||||++..+
T Consensus 151 ~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 151 KEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 5666777777777799999999999999853
No 113
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=90.09 E-value=0.27 Score=35.91 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=25.7
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcCC
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYDS 41 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~ 41 (97)
.....+++-.-..|||+||++.||||++.++
T Consensus 162 ~~~I~~~~~rd~~msa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 162 HEKLLRDMERDYFMSPEEAKAYGLIDSVIEP 192 (201)
T ss_pred HHHHHHHhccCcccCHHHHHHcCCCcEEecc
Confidence 4555677777778899999999999999964
No 114
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=90.06 E-value=0.29 Score=35.55 Aligned_cols=31 Identities=29% Similarity=0.255 Sum_probs=25.3
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcCC
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYDS 41 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~ 41 (97)
.....+.+-.-..+||+||++.||||++++.
T Consensus 160 ~~~i~~~~~rd~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 160 LERIQEDTDRDFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred HHHHHHHhhcCcCCCHHHHHHcCCCcEEecc
Confidence 4455677777778899999999999999864
No 115
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=89.89 E-value=0.29 Score=36.33 Aligned_cols=30 Identities=23% Similarity=0.082 Sum_probs=25.0
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcC
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYD 40 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~ 40 (97)
.....+.+-....+||+||++.||||+|++
T Consensus 189 ~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~ 218 (221)
T PRK14514 189 FDKVWADSDRDYWMTAQEAKEYGMIDEVLI 218 (221)
T ss_pred HHHHHHHhhcCccCCHHHHHHcCCccEEee
Confidence 455566777788889999999999999985
No 116
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=88.79 E-value=0.31 Score=34.89 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=25.3
Q ss_pred HHHhcccCCCHHHHHHccchhhhcCChHHHHH
Q 045617 16 EMVLKAAKLMAKEAVERGIIDAAYDSAEETVK 47 (97)
Q Consensus 16 el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~ 47 (97)
+-++.|..|++++|++.||||++.. .++.+.
T Consensus 175 ~~~~~~~~~~a~~A~~~gLiD~i~~-~~~~~~ 205 (208)
T cd07023 175 DKLADGRVWTGRQALELGLVDELGG-LDDAIA 205 (208)
T ss_pred HHhcCCcEEEHHHHHHcCCCcccCC-HHHHHH
Confidence 4467899999999999999999985 355543
No 117
>smart00250 PLEC Plectin repeat.
Probab=86.06 E-value=0.5 Score=25.36 Aligned_cols=18 Identities=44% Similarity=0.719 Sum_probs=16.9
Q ss_pred cccCCCHHHHHHccchhh
Q 045617 20 KAAKLMAKEAVERGIIDA 37 (97)
Q Consensus 20 tGrr~tA~EA~~~GlVd~ 37 (97)
||+++|-.||.+.||||.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 799999999999999985
No 118
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=86.05 E-value=0.3 Score=27.27 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=17.2
Q ss_pred cccCCCHHHHHHccchhhhc
Q 045617 20 KAAKLMAKEAVERGIIDAAY 39 (97)
Q Consensus 20 tGrr~tA~EA~~~GlVd~v~ 39 (97)
||++++-++|.+.|+||.-.
T Consensus 18 tg~~lsv~~A~~~glId~~~ 37 (45)
T PF00681_consen 18 TGERLSVEEAIQRGLIDSDT 37 (45)
T ss_dssp TTEEEEHHHHHHTTSS-HHH
T ss_pred CCeEEcHHHHHHCCCcCHHH
Confidence 69999999999999999765
No 119
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=85.01 E-value=0.83 Score=33.98 Aligned_cols=31 Identities=26% Similarity=0.226 Sum_probs=23.8
Q ss_pred HHHHHHHHhcccCCCHHHHHHccchhhhcCC
Q 045617 11 PTARREMVLKAAKLMAKEAVERGIIDAAYDS 41 (97)
Q Consensus 11 ~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~ 41 (97)
.....+.+=.-..+||+||++.||||++..+
T Consensus 184 ~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 184 VEKLSKDTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence 3444555556667899999999999999864
No 120
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=82.52 E-value=0.63 Score=34.21 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=20.7
Q ss_pred HHHhcccCCCHHHHHHccchhhhcCC
Q 045617 16 EMVLKAAKLMAKEAVERGIIDAAYDS 41 (97)
Q Consensus 16 el~ltGrr~tA~EA~~~GlVd~v~~~ 41 (97)
..+=....++|+||+++||||+|...
T Consensus 167 ~d~drd~~msa~eA~~yGLiD~V~~~ 192 (200)
T COG0740 167 KDTDRDTWMSAEEAKEYGLIDKVIES 192 (200)
T ss_pred HhhcccccCCHHHHHHcCCcceeccc
Confidence 33344567799999999999999865
No 121
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.64 E-value=0.92 Score=34.80 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=18.9
Q ss_pred cccCCCHHHHHHccchhhhcCC
Q 045617 20 KAAKLMAKEAVERGIIDAAYDS 41 (97)
Q Consensus 20 tGrr~tA~EA~~~GlVd~v~~~ 41 (97)
.-+.++++||.+.||||.|.++
T Consensus 236 Rd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 236 RDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred ccccCCHHHHHHhcchhhhhcC
Confidence 4467899999999999999963
No 122
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=80.95 E-value=1.5 Score=33.85 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=29.1
Q ss_pred HHHHhcccCCCHHHHHHccchhhhcCChHHHHHHHHHH
Q 045617 15 REMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKL 52 (97)
Q Consensus 15 ~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~l 52 (97)
..-+.+|+.|++++|++.||||++... ++.+..+.+.
T Consensus 236 ~~~~a~g~v~~g~~A~~~gLVDelg~~-~~av~~~~~~ 272 (317)
T COG0616 236 VDKLATGRVWTGQQALELGLVDELGGL-DDAVKDAAEL 272 (317)
T ss_pred HHHHhccceecHHHhhhcCCchhcCCH-HHHHHHHHHh
Confidence 567789999999999999999999963 4555554444
No 123
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=77.49 E-value=1.5 Score=35.30 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=30.1
Q ss_pred hhhCcHHHHHHHHhcccCCCHHHHHHccchhhhcCC
Q 045617 6 CKVGNPTARREMVLKAAKLMAKEAVERGIIDAAYDS 41 (97)
Q Consensus 6 ~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~ 41 (97)
.+++ ......+.|||.|++|.+|+..||...-|++
T Consensus 188 srlp-g~lg~YLgLTG~rl~GaD~~~~GlATHyv~S 222 (401)
T KOG1684|consen 188 SRLP-GYLGLYLGLTGQRLSGADALRCGLATHYVPS 222 (401)
T ss_pred hhCc-cHHHHhhhhccceecchHHHHhcchhhccch
Confidence 3454 4666899999999999999999999999986
No 124
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=66.88 E-value=7.5 Score=23.01 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=25.5
Q ss_pred ccCCCHHHHHHccchhhh---cCChHHHHHHHHHHHHHHhcCC
Q 045617 21 AAKLMAKEAVERGIIDAA---YDSAEETVKAAVKLGEELVNRK 60 (97)
Q Consensus 21 Grr~tA~EA~~~GlVd~v---~~~~~~ll~~A~~lA~~la~~~ 60 (97)
-.-|+|.|+.+| |++.+ +.+ .++|+.+++.+...+
T Consensus 15 ~~~F~G~e~v~W-L~~~~~~~~~~----r~eA~~l~q~Ll~~g 52 (74)
T PF00610_consen 15 PNCFTGSEAVDW-LMDNFEGFVRD----REEAVQLGQELLDHG 52 (74)
T ss_dssp CCEEEHHHHHHH-HHHTSCTSTSS----HHHHHHHHHHHHHCT
T ss_pred CCEeEhHHHHHH-HHHhccccccC----HHHHHHHHHHHHHCC
Confidence 356899999999 88632 444 668888888877553
No 125
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=63.01 E-value=11 Score=23.70 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=26.5
Q ss_pred cCCCHHHHHHccchhhh--cCChHHHHHHHHHHHHHHhcCC
Q 045617 22 AKLMAKEAVERGIIDAA--YDSAEETVKAAVKLGEELVNRK 60 (97)
Q Consensus 22 rr~tA~EA~~~GlVd~v--~~~~~~ll~~A~~lA~~la~~~ 60 (97)
.-|.|.|+.+| |++.. +.+ .++|+.+++.|...+
T Consensus 28 ~~F~GsdlVdW-L~~~~~~~~~----R~eAv~~g~~Ll~~G 63 (84)
T cd04438 28 NSFIGSDLVDW-LLSHVEGLTD----RREARKYASSLLKLG 63 (84)
T ss_pred ccccchHHHHH-HHHhCCCCCC----HHHHHHHHHHHHHCC
Confidence 34689999999 98866 333 578999999988764
No 126
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=62.75 E-value=11 Score=30.76 Aligned_cols=40 Identities=33% Similarity=0.422 Sum_probs=33.9
Q ss_pred cHHHHHHHHhcccCCCHHHHHHccchhhhcCChHHHHHHH
Q 045617 10 NPTARREMVLKAAKLMAKEAVERGIIDAAYDSAEETVKAA 49 (97)
Q Consensus 10 ~~~~a~el~ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A 49 (97)
++..+.+++-...-++++||++.|++|-+..+..+++...
T Consensus 157 N~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~ 196 (436)
T COG1030 157 NPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKL 196 (436)
T ss_pred ChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHHHc
Confidence 5777888999999999999999999999998866666443
No 127
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=57.21 E-value=18 Score=22.55 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=25.4
Q ss_pred cCCCHHHHHHccchhhh-cCChHHHHHHHHHHHHHHhcCC
Q 045617 22 AKLMAKEAVERGIIDAA-YDSAEETVKAAVKLGEELVNRK 60 (97)
Q Consensus 22 rr~tA~EA~~~GlVd~v-~~~~~~ll~~A~~lA~~la~~~ 60 (97)
.-|+|.|+.+| |++.. +.+ .++|+.+++.|..++
T Consensus 27 ~cF~GselVdW-L~~~~~~~~----R~eAv~~gq~Ll~~g 61 (81)
T cd04448 27 NCILGKELVNW-LIRQGKAAT----RVQAIAIGQALLDAG 61 (81)
T ss_pred cccChHHHHHH-HHHcCCCCC----HHHHHHHHHHHHHCC
Confidence 45799999999 88653 222 678899999888664
No 128
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=56.79 E-value=14 Score=21.93 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=26.6
Q ss_pred cccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCC
Q 045617 20 KAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRK 60 (97)
Q Consensus 20 tGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~ 60 (97)
.-.-|+|.||.+| |++..... -.++|+++++.+...+
T Consensus 17 ~~~~F~G~e~v~w-L~~~~~~~---~r~eA~~l~~~ll~~g 53 (77)
T smart00049 17 YPNCFTGSELVDW-LMDNLEII---DREEAVHLGQLLLDEG 53 (77)
T ss_pred CcceeEcHHHHHH-HHHcCCcC---CHHHHHHHHHHHHHCC
Confidence 3456899999999 88765421 1578888988877653
No 129
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=55.54 E-value=20 Score=22.55 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=25.2
Q ss_pred cCCCHHHHHHccchhh-hcCChHHHHHHHHHHHHHHhcCC
Q 045617 22 AKLMAKEAVERGIIDA-AYDSAEETVKAAVKLGEELVNRK 60 (97)
Q Consensus 22 rr~tA~EA~~~GlVd~-v~~~~~~ll~~A~~lA~~la~~~ 60 (97)
.-|+|.|+.+| |++. .+.+ -++|+.+++.+...+
T Consensus 29 ~cF~GselVdW-L~~~~~~~s----R~eAv~lg~~Ll~~G 63 (83)
T cd04443 29 GVFCGCDLVSW-LIEVGLAQD----RGEAVLYGRRLLQGG 63 (83)
T ss_pred ccccHHHHHHH-HHHcCCCCC----HHHHHHHHHHHHHCC
Confidence 34699999999 8863 2333 578999999988664
No 130
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=54.26 E-value=19 Score=22.36 Aligned_cols=39 Identities=36% Similarity=0.488 Sum_probs=27.6
Q ss_pred hcccCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCC
Q 045617 19 LKAAKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRK 60 (97)
Q Consensus 19 ltGrr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~ 60 (97)
.-..-|+|.|+..| |++..-. -.-.++|+++++.|...+
T Consensus 25 ~~~~cF~G~e~VdW-L~~~~~~--~~~r~eAv~lgq~Ll~~g 63 (83)
T cd04449 25 LPSNCFIGSEAVSW-LINNFED--VDTREEAVELGQELMNEG 63 (83)
T ss_pred cCCcceEhHHHHHH-HHHhCCC--CCCHHHHHHHHHHHHHCC
Confidence 33456789999999 8886421 123678999999887664
No 131
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=53.81 E-value=18 Score=21.54 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=25.9
Q ss_pred cCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCC
Q 045617 22 AKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRK 60 (97)
Q Consensus 22 rr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~ 60 (97)
.-|+|.|+.+| |.+..-.. -.++|.++++.+...+
T Consensus 27 ~~F~G~e~v~W-L~~~~~~~---~r~ea~~~~~~ll~~g 61 (81)
T cd04371 27 NCFTGSELVDW-LLDNLEAI---TREEAVELGQALLKHG 61 (81)
T ss_pred ceeEcHHHHHH-HHHhCCCC---CHHHHHHHHHHHHHCC
Confidence 46789999999 88766422 3678888888877553
No 132
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=51.51 E-value=20 Score=22.38 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=25.4
Q ss_pred cCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCC
Q 045617 22 AKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRK 60 (97)
Q Consensus 22 rr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~ 60 (97)
.-|+|.++.+| |++..-.. =.++|.++|..+...+
T Consensus 27 ~~F~G~~~v~W-L~~~~~~~---~~~EA~~~~~~ll~~g 61 (88)
T cd04450 27 YAFTGKAIVQW-LMDCTDVV---DPSEALEIAALFVKYG 61 (88)
T ss_pred ceeEhHHHHHH-HHHCCCCC---CHHHHHHHHHHHHHCC
Confidence 35789999999 88765311 2678889998887654
No 133
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=50.92 E-value=15 Score=30.71 Aligned_cols=28 Identities=21% Similarity=0.048 Sum_probs=21.7
Q ss_pred CCCHHHHHHccchhhhcCChHHHHHHHHH
Q 045617 23 KLMAKEAVERGIIDAAYDSAEETVKAAVK 51 (97)
Q Consensus 23 r~tA~EA~~~GlVd~v~~~~~~ll~~A~~ 51 (97)
.+++++|++.||||++.. .+++.+...+
T Consensus 251 g~~a~~A~~~gLVD~l~~-~de~~~~l~~ 278 (584)
T TIGR00705 251 GDGARYALAEKLVTAVCS-YAEAGKALKF 278 (584)
T ss_pred CchHHHHHHCCCcccCCC-HHHHHHHHHH
Confidence 458999999999999996 4676655443
No 134
>PRK10949 protease 4; Provisional
Probab=49.15 E-value=18 Score=30.70 Aligned_cols=28 Identities=32% Similarity=0.278 Sum_probs=21.8
Q ss_pred CCCHHHHHHccchhhhcCChHHHHHHHHH
Q 045617 23 KLMAKEAVERGIIDAAYDSAEETVKAAVK 51 (97)
Q Consensus 23 r~tA~EA~~~GlVd~v~~~~~~ll~~A~~ 51 (97)
.++|++|++.||||++.. .+++.+...+
T Consensus 270 ~~~a~~Al~~GLVD~l~~-~de~~~~l~~ 297 (618)
T PRK10949 270 GDTAKYALDNKLVDALAS-SAEIEKALTK 297 (618)
T ss_pred CccHHHHHHCCCCCcCCC-HHHHHHHHHH
Confidence 468999999999999996 4666655443
No 135
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=48.65 E-value=25 Score=21.98 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=25.5
Q ss_pred cCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCC
Q 045617 22 AKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRK 60 (97)
Q Consensus 22 rr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~ 60 (97)
.-|+|+|+.+| |++...-+ . .++|+.+++.|...+
T Consensus 27 ~cF~GselVdW-L~~~~~~~--~-r~eAv~lg~~Ll~~G 61 (81)
T cd04439 27 KCFLGNEFVSW-LLEIGEIS--K-PEEGVNLGQALLENG 61 (81)
T ss_pred ceeEhHHHHHH-HHHcCCCC--C-HHHHHHHHHHHHHCC
Confidence 34689999999 77654322 1 578999999988764
No 136
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=48.58 E-value=37 Score=22.73 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=32.2
Q ss_pred cCCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 045617 22 AKLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRKWDGHVYAQNR 70 (97)
Q Consensus 22 rr~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K 70 (97)
+-|+|.|+..| ||+.-..- -..+|+.+++.+...+.-..+....|
T Consensus 30 ~CF~Gse~VDW-Lv~~~~~i---~R~EAv~l~q~Lmd~gli~hV~~~s~ 74 (109)
T cd04444 30 KTFLGSALVDW-LISNSFAA---SRLEAVTLASMLMEENFLRPVGVRSM 74 (109)
T ss_pred ccccchHHHHH-HHHCCCCC---CHHHHHHHHHHHHhCCchhhHHHHhh
Confidence 45689999999 88875432 37889999999887765544444444
No 137
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=44.60 E-value=22 Score=27.91 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.2
Q ss_pred ccCCCHHHHHHccchhhhcCCh
Q 045617 21 AAKLMAKEAVERGIIDAAYDSA 42 (97)
Q Consensus 21 Grr~tA~EA~~~GlVd~v~~~~ 42 (97)
.-++||++.++.|+||.++|.+
T Consensus 250 ~~~ita~dL~~~giiD~ii~Ep 271 (322)
T CHL00198 250 ALKITSEDLKVLGIIDEIIPEP 271 (322)
T ss_pred HcCCCHHHHHhCCCCeEeccCC
Confidence 4589999999999999999753
No 138
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=41.20 E-value=1e+02 Score=23.22 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=17.6
Q ss_pred CCCHHHHHHccchhhhcCC
Q 045617 23 KLMAKEAVERGIIDAAYDS 41 (97)
Q Consensus 23 r~tA~EA~~~GlVd~v~~~ 41 (97)
++|+.++++.|+||.++|.
T Consensus 196 ~~~a~~l~~~g~iD~ii~e 214 (256)
T PRK12319 196 KITAGELLEMGVVDKVIPE 214 (256)
T ss_pred CCCHHHHHHCCCCcEecCC
Confidence 7799999999999999974
No 139
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=40.32 E-value=34 Score=21.71 Aligned_cols=34 Identities=18% Similarity=0.409 Sum_probs=25.0
Q ss_pred CCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCC
Q 045617 23 KLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRK 60 (97)
Q Consensus 23 r~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~ 60 (97)
-|.|.|+.+| |++.. + -.--++|+.+++.+..++
T Consensus 32 cF~GsElVdW-L~~~~-~--~~sR~eAv~lgq~Ll~~g 65 (85)
T cd04441 32 TFVGSEFIDW-LLQEG-E--AESRREAVQLCRRLLEHG 65 (85)
T ss_pred EeEchHHHHH-HHHcC-C--CCCHHHHHHHHHHHHHCC
Confidence 4679999999 88865 2 123778889998887654
No 140
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=35.21 E-value=1.5e+02 Score=23.25 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=18.1
Q ss_pred cCCCHHHHHHccchhhhcCC
Q 045617 22 AKLMAKEAVERGIIDAAYDS 41 (97)
Q Consensus 22 rr~tA~EA~~~GlVd~v~~~ 41 (97)
-++|+.++++.|+||.|++.
T Consensus 248 ~~ita~~l~~~g~iD~II~E 267 (319)
T PRK05724 248 MKITAQDLKELGIIDEIIPE 267 (319)
T ss_pred cCCCHHHHHHCCCceEeccC
Confidence 46899999999999999975
No 141
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=34.47 E-value=50 Score=20.73 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=24.6
Q ss_pred CCCHHHHHHccchhhhcCChHHHHHHHHHHHHHHhcCC
Q 045617 23 KLMAKEAVERGIIDAAYDSAEETVKAAVKLGEELVNRK 60 (97)
Q Consensus 23 r~tA~EA~~~GlVd~v~~~~~~ll~~A~~lA~~la~~~ 60 (97)
-|.|.|+.+| |++..-. .--++|+.+++.+...+
T Consensus 28 cF~GselVdW-L~~~~~~---~sR~eAv~lgq~Ll~~g 61 (82)
T cd04442 28 CFVGKELIDW-LIEHKEA---SDRETAIKIMQKLLDHS 61 (82)
T ss_pred eeEcHHHHHH-HHHcCCC---CCHHHHHHHHHHHHHCC
Confidence 4689999999 8775421 23778889988877654
No 142
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=33.97 E-value=1.7e+02 Score=24.15 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=17.9
Q ss_pred CCCHHHHHHccchhhhcCC
Q 045617 23 KLMAKEAVERGIIDAAYDS 41 (97)
Q Consensus 23 r~tA~EA~~~GlVd~v~~~ 41 (97)
++|+.++++.|+||.+++.
T Consensus 319 kitA~dL~~~GiID~II~E 337 (431)
T PLN03230 319 RITAAELVKLGVVDEIVPE 337 (431)
T ss_pred CCCHHHHHhCCCCeEeccC
Confidence 8999999999999999975
No 143
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=32.73 E-value=62 Score=21.96 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=25.1
Q ss_pred cCCCHHHHHHccchhhh--cCChHHHHHHHHHHHHHHhcCC
Q 045617 22 AKLMAKEAVERGIIDAA--YDSAEETVKAAVKLGEELVNRK 60 (97)
Q Consensus 22 rr~tA~EA~~~GlVd~v--~~~~~~ll~~A~~lA~~la~~~ 60 (97)
+-|.|.|+.+| |++.. +.+ -++|+.+++.+..++
T Consensus 29 ~cF~GsElVdW-Ll~~~~~v~s----R~eAv~lgq~Ll~~g 64 (125)
T cd04437 29 QCCVGTELVDW-LLQQSPCVQS----RSQAVGMWQVLLEEG 64 (125)
T ss_pred cccccHHHHHH-HHHcCCCCCC----HHHHHHHHHHHHhCC
Confidence 34689999999 88874 223 568888988877654
No 144
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=31.95 E-value=2e+02 Score=20.80 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=41.1
Q ss_pred HHHHHhcccCCCHHHHHHccchhhh--cCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHH
Q 045617 14 RREMVLKAAKLMAKEAVERGIIDAA--YDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLRE 76 (97)
Q Consensus 14 a~el~ltGrr~tA~EA~~~GlVd~v--~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~ 76 (97)
..+.++.+...+.+ ...-.+|+.- +++.++++..|..+..+..+. ++.....+++.++..
T Consensus 117 lA~~il~~~~~~~~-~~a~~~v~~~~gv~s~e~al~Ga~dIiAE~is~--d~~~r~~lr~~~~~~ 178 (193)
T PF09371_consen 117 LADKILEQPESDPE-VEAKKFVNEEKGVPSVEEALAGAQDIIAERISE--DPELREKLRKLLWKN 178 (193)
T ss_dssp HHHHHHH-TTS-HH-HHHHTT-BGGGTB-SHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccchH-HHHHHHhCcccCCCCHHHHHHhHHHHHHHHHHc--CHHHHHHHHHHHHhc
Confidence 35666767665443 3444578866 777889999999998887777 788999999888765
No 145
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=30.67 E-value=1.9e+02 Score=25.53 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=18.7
Q ss_pred ccCCCHHHHHHccchhhhcCC
Q 045617 21 AAKLMAKEAVERGIIDAAYDS 41 (97)
Q Consensus 21 Grr~tA~EA~~~GlVd~v~~~ 41 (97)
.-++||++.++.|+||.++|.
T Consensus 338 ~lkiTa~dL~~lGiiD~IIpE 358 (762)
T PLN03229 338 KLRITAQELCRLQIADGIIPE 358 (762)
T ss_pred HcCCCHHHHHhCCCCeeeccC
Confidence 458999999999999999975
No 146
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=30.30 E-value=51 Score=25.84 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=18.3
Q ss_pred cCCCHHHHHHccchhhhcCCh
Q 045617 22 AKLMAKEAVERGIIDAAYDSA 42 (97)
Q Consensus 22 rr~tA~EA~~~GlVd~v~~~~ 42 (97)
-++|+.++++.|+||.++|.+
T Consensus 248 ~~~ta~~l~~~G~iD~II~ep 268 (316)
T TIGR00513 248 MKITAPDLKELGLIDSIIPEP 268 (316)
T ss_pred ccCCHHHHHHCCCCeEeccCC
Confidence 477899999999999999753
No 147
>KOG3952 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.94 E-value=49 Score=25.47 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=24.3
Q ss_pred ChhHHHHHHHHHhHHHHH---hccCchhhhhhh
Q 045617 62 DGHVYAQNRVVVLREVLD---HLDYDETVDQLK 91 (97)
Q Consensus 62 ~~~a~~~~K~~l~~~~l~---~~~~~~~~~~~~ 91 (97)
-|.+|-.+|+.+|+++|+ +.++-+..|||.
T Consensus 271 LplAYnlLkrnlFAeIie~hLanRsqenidqla 303 (304)
T KOG3952|consen 271 LPLAYNLLKRNLFAEIIELHLANRSQENIDQLA 303 (304)
T ss_pred HHHHHHhhcHhHHHHHHHHHHhccchhhhhhhc
Confidence 478999999999999987 466777778773
No 148
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=28.37 E-value=32 Score=27.02 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=19.7
Q ss_pred cccCCCHHHHHHccchhhhcCCh
Q 045617 20 KAAKLMAKEAVERGIIDAAYDSA 42 (97)
Q Consensus 20 tGrr~tA~EA~~~GlVd~v~~~~ 42 (97)
..-++||.+.++.||||.++|.+
T Consensus 245 e~mkita~dLk~lgiID~II~Ep 267 (317)
T COG0825 245 EAMKITAHDLKELGIIDGIIPEP 267 (317)
T ss_pred HHcCCCHHHHHhCCCcceeccCC
Confidence 35589999999999999999753
No 149
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=27.15 E-value=72 Score=20.68 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=25.2
Q ss_pred cCCCHHHHHHccchhhhcC-----ChHHHHHHHHHHHHHHhcCC
Q 045617 22 AKLMAKEAVERGIIDAAYD-----SAEETVKAAVKLGEELVNRK 60 (97)
Q Consensus 22 rr~tA~EA~~~GlVd~v~~-----~~~~ll~~A~~lA~~la~~~ 60 (97)
.=|+|.||.+| |++-... +.+---++|+++++.+...+
T Consensus 26 ~CF~GsEaVDw-L~~~l~~n~~f~~~~~tR~~Av~l~q~Ll~~g 68 (95)
T cd04446 26 DCFLGSEAVDV-VLAHLMQNKYFGDVDVPRAKAVRLCQALMDCR 68 (95)
T ss_pred cccchHHHHHH-HHHHHhhccccCcccCCHHHHHHHHHHHHHcC
Confidence 34789999998 6654421 11224778889988887654
No 150
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=26.08 E-value=21 Score=20.13 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=15.4
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhh
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAA 38 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v 38 (97)
++-.+| ..+ ++++.|.++..+...+.|+.-+-
T Consensus 6 lkl~lG--e~a-~lll~~q~v~P~kL~~~GF~F~~ 37 (48)
T PF08338_consen 6 LKLLLG--EMA-ELLLASQRVSPKKLLEAGFQFRY 37 (48)
T ss_dssp ----------G-GGGG-EEEE--HHHHHTT---S-
T ss_pred HHHHHH--HHH-HHHhCCCeecChHHHHCCCcccC
Confidence 455555 334 99999999999999999987643
No 151
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=24.95 E-value=2e+02 Score=18.62 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=21.0
Q ss_pred hhhhhCcHHHHHHHHhcccCCCHHHHHHccchhhh
Q 045617 4 IECKVGNPTARREMVLKAAKLMAKEAVERGIIDAA 38 (97)
Q Consensus 4 ~r~kig~~~~a~el~ltGrr~tA~EA~~~GlVd~v 38 (97)
++.-++-..+-..+=.-..=|+|.||.+| |++..
T Consensus 10 ~r~g~~vk~rR~~lr~y~~CF~gsEAVDw-L~~~l 43 (92)
T cd04447 10 FRAGMPLRKHRQHFKSYENCFTASEAVDW-LHELL 43 (92)
T ss_pred HHccCChHHHHHhcccCccccchHHHHHH-HHHHH
Confidence 45555523333344445667899999999 77765
No 152
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family. This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae, the OutS protein of Erwinia chrysanthemi and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.
Probab=24.26 E-value=2.4e+02 Score=19.35 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=26.8
Q ss_pred cCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHhHHHHHhccCc
Q 045617 39 YDSAEETVKAAVKLGEELVNRKWDGHVYAQNRVVVLREVLDHLDYD 84 (97)
Q Consensus 39 ~~~~~~ll~~A~~lA~~la~~~~~~~a~~~~K~~l~~~~l~~~~~~ 84 (97)
.|+.+.+...|+.+|.+ ++|+...|..+++. ..+....|...
T Consensus 61 iPd~~~I~raai~~A~~---~gWd~~~y~~l~~~-se~~Yq~L~~d 102 (128)
T TIGR01004 61 LPDDGSILKTANNVAIG---KGWDSGRQEDLPQH-SDDLYQGLLKD 102 (128)
T ss_pred CCcHHHHHHHHHHHHHH---cCCchhhHHHHHHH-HHHHHHHHhcc
Confidence 36633388888888876 77777788877743 44444444433
Done!