Query 045618
Match_columns 349
No_of_seqs 205 out of 2133
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:48:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-46 4.2E-51 379.2 20.0 284 12-302 180-496 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.7E-44 5.9E-49 379.5 28.9 323 11-341 207-541 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 8.2E-38 1.8E-42 284.4 8.4 245 10-263 18-279 (287)
4 PRK04841 transcriptional regul 99.6 3.2E-13 6.8E-18 141.6 23.2 203 95-305 120-336 (903)
5 COG2909 MalT ATP-dependent tra 99.1 5E-09 1.1E-13 103.5 17.2 199 96-308 129-345 (894)
6 COG3903 Predicted ATPase [Gene 99.1 1.3E-10 2.9E-15 106.3 4.7 281 11-305 14-318 (414)
7 TIGR00635 ruvB Holliday juncti 98.8 1.5E-07 3.2E-12 86.4 16.3 184 88-287 100-294 (305)
8 PRK00080 ruvB Holliday junctio 98.8 6.3E-08 1.4E-12 89.7 12.4 154 124-286 151-314 (328)
9 TIGR03015 pepcterm_ATPase puta 98.6 4.1E-06 8.8E-11 75.3 16.8 170 16-199 48-242 (269)
10 PRK00411 cdc6 cell division co 98.6 2.3E-05 5E-10 74.5 22.8 252 16-282 60-358 (394)
11 PF05729 NACHT: NACHT domain 98.6 3.7E-07 8.1E-12 75.4 8.9 71 94-164 79-163 (166)
12 PF01637 Arch_ATPase: Archaeal 98.2 9.2E-06 2E-10 71.0 10.5 97 96-194 118-233 (234)
13 TIGR02928 orc1/cdc6 family rep 98.2 0.0008 1.7E-08 63.3 23.1 256 16-282 45-350 (365)
14 COG3899 Predicted ATPase [Gene 98.1 6.9E-05 1.5E-09 77.6 15.7 205 94-301 152-386 (849)
15 PRK06893 DNA replication initi 97.9 9.7E-05 2.1E-09 64.8 10.1 94 98-193 93-201 (229)
16 PF13173 AAA_14: AAA domain 97.8 0.00012 2.6E-09 58.0 8.3 69 87-155 52-126 (128)
17 PRK13342 recombination factor 97.8 0.0006 1.3E-08 65.3 13.9 101 94-197 90-198 (413)
18 TIGR03420 DnaA_homol_Hda DnaA 97.7 0.00054 1.2E-08 59.8 11.3 98 98-197 92-203 (226)
19 COG2256 MGS1 ATPase related to 97.7 0.00079 1.7E-08 62.2 12.2 97 91-190 99-207 (436)
20 PRK14963 DNA polymerase III su 97.6 0.0032 6.9E-08 61.6 16.7 96 95-192 115-214 (504)
21 PRK12323 DNA polymerase III su 97.6 0.0044 9.5E-08 61.6 16.5 97 94-192 122-222 (700)
22 PRK07471 DNA polymerase III su 97.5 0.0051 1.1E-07 57.7 16.2 95 95-195 140-238 (365)
23 PRK09087 hypothetical protein; 97.4 0.0016 3.6E-08 56.9 10.9 92 99-194 90-194 (226)
24 PRK07003 DNA polymerase III su 97.4 0.0014 3.1E-08 65.8 11.2 98 95-194 118-220 (830)
25 PF13401 AAA_22: AAA domain; P 97.4 0.00023 5.1E-09 56.2 4.6 111 16-133 9-125 (131)
26 PRK05564 DNA polymerase III su 97.3 0.0066 1.4E-07 55.9 13.3 93 95-193 92-188 (313)
27 TIGR00678 holB DNA polymerase 97.2 0.0053 1.1E-07 52.0 11.4 88 95-190 95-186 (188)
28 PRK14960 DNA polymerase III su 97.2 0.0018 4E-08 64.3 9.4 97 94-192 116-216 (702)
29 PRK14961 DNA polymerase III su 97.2 0.006 1.3E-07 57.4 12.2 95 95-191 118-216 (363)
30 PRK14949 DNA polymerase III su 97.1 0.0069 1.5E-07 62.2 12.3 98 94-193 117-218 (944)
31 PRK13341 recombination factor 97.0 0.0079 1.7E-07 61.3 12.4 92 95-189 108-211 (725)
32 PRK08727 hypothetical protein; 97.0 0.0092 2E-07 52.5 11.4 91 98-190 95-199 (233)
33 PRK05707 DNA polymerase III su 97.0 0.0018 4E-08 59.8 6.9 92 96-193 106-201 (328)
34 PRK07994 DNA polymerase III su 97.0 0.0032 6.9E-08 63.0 8.9 97 94-192 117-217 (647)
35 PRK14956 DNA polymerase III su 97.0 0.0033 7.1E-08 60.5 8.6 96 94-191 119-218 (484)
36 PRK07940 DNA polymerase III su 97.0 0.011 2.4E-07 56.0 11.9 91 95-192 116-210 (394)
37 PRK09112 DNA polymerase III su 96.9 0.014 3E-07 54.5 12.2 96 95-194 140-239 (351)
38 PRK06645 DNA polymerase III su 96.9 0.018 3.9E-07 56.3 13.3 96 94-191 126-225 (507)
39 PF14516 AAA_35: AAA-like doma 96.9 0.28 6.2E-06 45.5 20.7 55 142-202 192-246 (331)
40 PRK08691 DNA polymerase III su 96.9 0.0028 6.1E-08 63.4 7.7 96 95-192 118-217 (709)
41 PRK12402 replication factor C 96.9 0.035 7.6E-07 51.4 14.8 95 96-192 125-223 (337)
42 PRK04195 replication factor C 96.9 0.083 1.8E-06 51.7 17.9 95 95-193 97-200 (482)
43 PRK08903 DnaA regulatory inact 96.9 0.016 3.4E-07 50.6 11.7 101 97-199 91-203 (227)
44 TIGR01242 26Sp45 26S proteasom 96.9 0.019 4.2E-07 54.0 12.8 92 95-189 214-328 (364)
45 PRK07764 DNA polymerase III su 96.8 0.06 1.3E-06 55.8 16.6 96 93-190 117-216 (824)
46 PRK08084 DNA replication initi 96.8 0.0085 1.8E-07 52.7 9.2 92 98-192 99-206 (235)
47 PRK06620 hypothetical protein; 96.8 0.013 2.7E-07 50.8 10.2 87 98-188 87-182 (214)
48 PRK14951 DNA polymerase III su 96.8 0.022 4.7E-07 57.0 12.9 96 95-192 123-222 (618)
49 PRK14964 DNA polymerase III su 96.8 0.0048 1E-07 59.9 8.1 94 95-190 115-212 (491)
50 PRK14087 dnaA chromosomal repl 96.8 0.02 4.4E-07 55.3 12.2 109 88-197 199-321 (450)
51 PLN03025 replication factor C 96.8 0.026 5.6E-07 52.1 12.5 93 95-189 98-194 (319)
52 PRK00440 rfc replication facto 96.7 0.13 2.9E-06 47.1 17.0 94 96-191 102-199 (319)
53 cd00009 AAA The AAA+ (ATPases 96.7 0.01 2.2E-07 47.0 8.5 44 92-135 80-131 (151)
54 PRK14957 DNA polymerase III su 96.7 0.029 6.2E-07 55.3 12.9 100 94-195 117-221 (546)
55 PRK14958 DNA polymerase III su 96.7 0.0041 8.9E-08 60.9 6.9 96 95-192 118-217 (509)
56 PRK05642 DNA replication initi 96.6 0.037 8.1E-07 48.6 12.0 92 99-192 100-205 (234)
57 PF05496 RuvB_N: Holliday junc 96.6 0.013 2.8E-07 50.6 8.4 67 126-194 152-220 (233)
58 TIGR02397 dnaX_nterm DNA polym 96.5 0.049 1.1E-06 50.9 12.7 99 95-195 116-218 (355)
59 PF00308 Bac_DnaA: Bacterial d 96.5 0.029 6.2E-07 48.8 10.0 98 88-190 90-203 (219)
60 PRK14969 DNA polymerase III su 96.4 0.035 7.6E-07 54.8 11.4 95 94-190 117-215 (527)
61 PRK05896 DNA polymerase III su 96.4 0.057 1.2E-06 53.6 12.6 99 96-196 119-222 (605)
62 PRK14962 DNA polymerase III su 96.3 0.048 1E-06 53.0 11.8 102 95-198 116-222 (472)
63 COG1373 Predicted ATPase (AAA+ 96.3 0.14 3.1E-06 48.7 14.7 167 96-281 94-269 (398)
64 PRK14955 DNA polymerase III su 96.3 0.061 1.3E-06 51.2 12.3 96 95-192 126-225 (397)
65 PRK14954 DNA polymerase III su 96.3 0.089 1.9E-06 52.8 13.7 95 94-190 125-223 (620)
66 TIGR00362 DnaA chromosomal rep 96.3 0.072 1.6E-06 50.9 12.6 100 89-191 193-306 (405)
67 cd01128 rho_factor Transcripti 96.3 0.0018 4E-08 57.3 1.4 78 16-108 21-115 (249)
68 PRK09111 DNA polymerase III su 96.2 0.28 6E-06 49.2 16.7 98 95-194 131-232 (598)
69 TIGR02903 spore_lon_C ATP-depe 96.2 0.077 1.7E-06 53.4 12.8 110 87-198 283-398 (615)
70 COG2812 DnaX DNA polymerase II 96.2 0.13 2.9E-06 50.0 13.6 92 96-189 119-214 (515)
71 PRK14950 DNA polymerase III su 96.1 0.2 4.4E-06 50.2 15.4 99 95-195 119-221 (585)
72 PRK14959 DNA polymerase III su 96.1 0.087 1.9E-06 52.6 12.4 103 94-198 117-224 (624)
73 PRK04132 replication factor C 96.1 0.17 3.8E-06 52.3 14.8 94 96-191 630-727 (846)
74 PRK06871 DNA polymerase III su 96.0 0.044 9.6E-07 50.5 9.3 89 95-190 106-198 (325)
75 PRK14952 DNA polymerase III su 96.0 0.19 4E-06 50.2 13.9 94 95-190 117-214 (584)
76 PRK14088 dnaA chromosomal repl 95.9 0.12 2.7E-06 49.8 12.4 99 89-189 187-299 (440)
77 PRK14953 DNA polymerase III su 95.9 0.036 7.9E-07 54.1 8.6 98 95-194 118-219 (486)
78 PRK03992 proteasome-activating 95.9 0.092 2E-06 49.9 11.0 91 95-189 223-337 (389)
79 TIGR02881 spore_V_K stage V sp 95.9 0.089 1.9E-06 47.0 10.4 69 97-165 106-192 (261)
80 PRK00149 dnaA chromosomal repl 95.9 0.13 2.8E-06 50.0 12.2 100 89-191 205-318 (450)
81 TIGR02880 cbbX_cfxQ probable R 95.9 0.11 2.4E-06 47.0 11.1 68 97-164 122-208 (284)
82 PRK09376 rho transcription ter 95.9 0.009 1.9E-07 55.9 3.9 79 16-109 174-269 (416)
83 PRK12422 chromosomal replicati 95.8 0.24 5.2E-06 47.8 13.8 96 89-187 196-305 (445)
84 PRK08769 DNA polymerase III su 95.8 0.11 2.3E-06 47.9 10.9 91 95-193 112-206 (319)
85 PHA02544 44 clamp loader, smal 95.8 0.42 9.1E-06 43.9 14.8 69 95-163 99-172 (316)
86 COG2255 RuvB Holliday junction 95.7 0.13 2.7E-06 45.9 10.3 153 127-288 155-317 (332)
87 PRK06090 DNA polymerase III su 95.7 0.27 6E-06 45.2 13.0 91 95-195 107-201 (319)
88 PRK08451 DNA polymerase III su 95.7 0.063 1.4E-06 52.8 9.1 96 95-192 116-215 (535)
89 PRK06647 DNA polymerase III su 95.6 0.17 3.7E-06 50.3 12.0 97 94-192 117-217 (563)
90 PTZ00112 origin recognition co 95.5 1.1 2.4E-05 46.6 17.2 142 16-165 786-950 (1164)
91 PRK07133 DNA polymerase III su 95.5 0.33 7.1E-06 49.4 13.7 98 95-194 117-219 (725)
92 CHL00181 cbbX CbbX; Provisiona 95.2 0.37 8E-06 43.7 12.1 69 97-165 123-210 (287)
93 PF05621 TniB: Bacterial TniB 95.2 0.24 5.1E-06 44.8 10.5 172 16-192 66-258 (302)
94 COG1474 CDC6 Cdc6-related prot 95.2 0.72 1.6E-05 43.4 14.2 252 16-283 47-335 (366)
95 PRK14970 DNA polymerase III su 95.2 0.45 9.8E-06 44.8 13.1 94 95-190 107-204 (367)
96 PRK05563 DNA polymerase III su 95.2 0.31 6.7E-06 48.6 12.3 96 94-191 117-216 (559)
97 PRK06305 DNA polymerase III su 95.1 0.81 1.7E-05 44.4 14.7 94 95-190 120-217 (451)
98 PRK14948 DNA polymerase III su 95.1 0.51 1.1E-05 47.6 13.6 97 95-193 120-220 (620)
99 PRK14086 dnaA chromosomal repl 95.1 0.37 8E-06 48.1 12.3 97 89-188 371-481 (617)
100 PRK14965 DNA polymerase III su 95.0 0.071 1.5E-06 53.3 7.4 98 95-194 118-220 (576)
101 PRK14971 DNA polymerase III su 95.0 0.33 7.2E-06 48.9 12.0 94 95-190 120-217 (614)
102 PTZ00454 26S protease regulato 95.0 0.25 5.3E-06 47.0 10.6 96 90-189 232-351 (398)
103 PRK08116 hypothetical protein; 95.0 0.11 2.5E-06 46.5 8.0 46 88-134 171-221 (268)
104 PRK06526 transposase; Provisio 94.9 0.066 1.4E-06 47.7 6.1 16 16-31 103-118 (254)
105 PRK07993 DNA polymerase III su 94.9 0.073 1.6E-06 49.4 6.5 89 95-190 107-199 (334)
106 PRK06964 DNA polymerase III su 94.8 1 2.2E-05 41.9 13.8 88 95-192 131-222 (342)
107 KOG2028 ATPase related to the 94.8 0.52 1.1E-05 43.6 11.4 144 18-189 169-330 (554)
108 PF00004 AAA: ATPase family as 94.6 0.067 1.5E-06 41.8 4.9 18 17-34 4-21 (132)
109 TIGR01241 FtsH_fam ATP-depende 94.6 0.48 1E-05 46.6 11.8 99 88-189 139-260 (495)
110 PRK07399 DNA polymerase III su 94.5 0.72 1.6E-05 42.4 12.1 95 95-194 123-220 (314)
111 CHL00176 ftsH cell division pr 94.5 0.56 1.2E-05 47.4 12.2 99 87-188 266-387 (638)
112 TIGR00767 rho transcription te 94.5 0.056 1.2E-06 50.9 4.8 79 16-109 173-268 (415)
113 TIGR03689 pup_AAA proteasome A 94.3 0.11 2.3E-06 50.9 6.5 71 94-164 287-378 (512)
114 PRK08699 DNA polymerase III su 94.3 0.27 5.8E-06 45.5 8.8 86 96-191 113-202 (325)
115 COG0593 DnaA ATPase involved i 94.2 0.47 1E-05 45.0 10.2 79 88-168 169-261 (408)
116 PRK08181 transposase; Validate 94.1 0.14 3.1E-06 45.8 6.5 16 16-31 111-126 (269)
117 KOG0741 AAA+-type ATPase [Post 94.1 0.39 8.5E-06 46.5 9.6 107 88-199 590-716 (744)
118 PRK09183 transposase/IS protei 93.7 0.17 3.7E-06 45.2 6.2 16 16-31 107-122 (259)
119 CHL00195 ycf46 Ycf46; Provisio 93.4 0.25 5.4E-06 48.2 7.2 95 94-189 316-429 (489)
120 TIGR02639 ClpA ATP-dependent C 93.3 0.29 6.3E-06 50.5 7.8 68 95-164 273-358 (731)
121 KOG0735 AAA+-type ATPase [Post 93.1 0.84 1.8E-05 45.9 10.2 155 16-195 436-616 (952)
122 COG3267 ExeA Type II secretory 92.8 2.4 5.3E-05 37.3 11.6 171 16-197 56-247 (269)
123 COG0542 clpA ATP-binding subun 92.8 0.33 7.2E-06 49.5 7.2 32 88-119 584-618 (786)
124 PRK08058 DNA polymerase III su 92.8 0.39 8.4E-06 44.5 7.2 69 95-163 109-181 (329)
125 KOG2543 Origin recognition com 92.6 0.2 4.3E-06 46.5 4.9 129 19-164 38-193 (438)
126 TIGR03345 VI_ClpV1 type VI sec 92.3 1.2 2.6E-05 46.7 10.8 68 95-164 279-363 (852)
127 PTZ00361 26 proteosome regulat 92.2 0.28 6.1E-06 47.1 5.7 94 92-189 272-389 (438)
128 TIGR01243 CDC48 AAA family ATP 91.9 1.3 2.8E-05 45.8 10.5 95 92-189 542-657 (733)
129 TIGR02639 ClpA ATP-dependent C 91.7 1.4 3E-05 45.6 10.4 31 88-118 544-577 (731)
130 smart00382 AAA ATPases associa 91.3 0.84 1.8E-05 35.3 6.8 16 16-31 7-22 (148)
131 CHL00095 clpC Clp protease ATP 91.0 0.67 1.4E-05 48.6 7.4 67 95-163 270-353 (821)
132 PF01695 IstB_IS21: IstB-like 91.0 0.17 3.7E-06 42.5 2.5 16 16-31 52-67 (178)
133 COG1484 DnaC DNA replication p 90.7 0.67 1.4E-05 41.3 6.1 16 16-31 110-125 (254)
134 TIGR03346 chaperone_ClpB ATP-d 90.6 0.81 1.7E-05 48.2 7.6 17 16-32 600-616 (852)
135 PRK11034 clpA ATP-dependent Cl 90.4 0.97 2.1E-05 46.7 7.7 68 95-164 277-362 (758)
136 TIGR02640 gas_vesic_GvpN gas v 90.2 6.1 0.00013 35.2 12.0 17 16-32 26-42 (262)
137 PF07728 AAA_5: AAA domain (dy 90.2 0.066 1.4E-06 42.7 -0.7 18 17-34 5-22 (139)
138 PRK07952 DNA replication prote 89.6 1 2.2E-05 39.8 6.4 16 16-31 104-119 (244)
139 PRK12377 putative replication 89.6 1.2 2.6E-05 39.5 6.8 16 16-31 106-121 (248)
140 PRK08939 primosomal protein Dn 89.6 1.1 2.5E-05 41.0 6.8 18 16-33 161-178 (306)
141 PLN00020 ribulose bisphosphate 89.5 2.1 4.5E-05 40.1 8.4 65 122-190 266-333 (413)
142 TIGR01243 CDC48 AAA family ATP 89.4 1.6 3.4E-05 45.2 8.5 96 91-189 266-381 (733)
143 PRK08118 topology modulation p 89.3 0.78 1.7E-05 38.0 5.1 31 16-46 6-38 (167)
144 PRK10865 protein disaggregatio 89.3 2.9 6.2E-05 44.1 10.3 18 16-33 603-620 (857)
145 CHL00095 clpC Clp protease ATP 89.0 0.97 2.1E-05 47.4 6.6 32 88-119 602-636 (821)
146 cd01125 repA Hexameric Replica 88.8 3.5 7.5E-05 36.2 9.2 15 16-30 6-20 (239)
147 PF03969 AFG1_ATPase: AFG1-lik 88.7 0.85 1.8E-05 42.8 5.4 46 86-134 117-167 (362)
148 PRK10865 protein disaggregatio 88.7 1.8 3.8E-05 45.6 8.3 68 95-164 270-354 (857)
149 COG1222 RPT1 ATP-dependent 26S 88.7 6.6 0.00014 36.5 10.8 160 9-199 175-371 (406)
150 PF13177 DNA_pol3_delta2: DNA 88.5 1.7 3.7E-05 35.7 6.5 58 95-152 101-162 (162)
151 PRK10733 hflB ATP-dependent me 88.4 3.6 7.8E-05 41.9 10.1 78 89-166 237-337 (644)
152 TIGR03345 VI_ClpV1 type VI sec 87.8 0.95 2.1E-05 47.5 5.6 39 95-133 667-718 (852)
153 TIGR00763 lon ATP-dependent pr 87.4 3.3 7.2E-05 43.2 9.3 21 144-164 485-505 (775)
154 TIGR01069 mutS2 MutS2 family p 87.3 1.5 3.3E-05 45.4 6.8 112 95-215 401-521 (771)
155 COG4618 ArpD ABC-type protease 86.7 2.1 4.5E-05 41.5 6.7 49 88-139 482-537 (580)
156 PRK10787 DNA-binding ATP-depen 86.7 2.6 5.7E-05 43.8 8.0 70 96-165 416-507 (784)
157 PF04665 Pox_A32: Poxvirus A32 86.1 2.7 5.8E-05 37.0 6.7 17 16-32 18-34 (241)
158 TIGR00602 rad24 checkpoint pro 86.1 5.2 0.00011 40.5 9.5 71 94-164 193-287 (637)
159 cd03238 ABC_UvrA The excision 86.0 4.3 9.3E-05 33.9 7.7 59 88-148 97-161 (176)
160 PRK06921 hypothetical protein; 85.7 1.7 3.6E-05 39.0 5.4 16 16-31 122-137 (266)
161 TIGR03346 chaperone_ClpB ATP-d 85.5 2.7 5.9E-05 44.3 7.6 68 95-164 265-349 (852)
162 PRK06835 DNA replication prote 85.5 1.9 4.1E-05 39.9 5.7 16 16-31 188-203 (329)
163 PRK07276 DNA polymerase III su 84.9 9.7 0.00021 34.6 9.9 68 94-162 102-173 (290)
164 KOG2228 Origin recognition com 84.4 6.6 0.00014 36.2 8.4 139 16-164 54-219 (408)
165 KOG0989 Replication factor C, 83.8 7.5 0.00016 35.4 8.4 89 98-188 131-223 (346)
166 COG1419 FlhF Flagellar GTP-bin 83.2 2.8 6.2E-05 39.5 5.8 83 14-106 206-291 (407)
167 PF13671 AAA_33: AAA domain; P 82.9 1.7 3.6E-05 34.5 3.8 18 17-34 5-22 (143)
168 PRK11034 clpA ATP-dependent Cl 82.2 2.6 5.7E-05 43.6 5.7 31 88-118 548-581 (758)
169 PF05673 DUF815: Protein of un 82.0 8.5 0.00018 33.9 7.9 44 95-138 105-155 (249)
170 COG0470 HolB ATPase involved i 81.3 5.8 0.00012 36.2 7.3 60 94-153 107-170 (325)
171 PRK00409 recombination and DNA 80.3 4.2 9.1E-05 42.4 6.4 113 95-215 406-526 (782)
172 PTZ00202 tuzin; Provisional 79.8 4.6 9.9E-05 38.9 5.9 131 16-163 291-433 (550)
173 KOG1051 Chaperone HSP104 and r 79.2 7.3 0.00016 40.8 7.6 75 16-108 596-672 (898)
174 PRK11331 5-methylcytosine-spec 79.0 3 6.5E-05 40.2 4.5 17 16-32 199-215 (459)
175 KOG1969 DNA replication checkp 78.8 3.8 8.2E-05 41.5 5.3 18 17-34 332-349 (877)
176 PRK05800 cobU adenosylcobinami 78.5 4.1 9E-05 33.8 4.8 15 16-30 6-20 (170)
177 PRK12608 transcription termina 78.5 6.6 0.00014 36.9 6.5 15 94-108 218-232 (380)
178 COG0464 SpoVK ATPases of the A 77.8 23 0.00049 34.8 10.5 81 85-165 324-424 (494)
179 TIGR00708 cobA cob(I)alamin ad 77.2 15 0.00032 30.6 7.7 48 88-135 88-141 (173)
180 cd00544 CobU Adenosylcobinamid 76.9 6.1 0.00013 32.7 5.4 75 17-105 5-82 (169)
181 cd03228 ABCC_MRP_Like The MRP 76.1 8.9 0.00019 31.6 6.2 51 88-138 106-159 (171)
182 COG1136 SalX ABC-type antimicr 75.5 22 0.00049 30.9 8.6 58 88-148 152-215 (226)
183 KOG2383 Predicted ATPase [Gene 75.5 4.4 9.5E-05 38.2 4.4 48 85-135 182-234 (467)
184 PRK13531 regulatory ATPase Rav 75.4 7.6 0.00016 37.9 6.2 65 99-163 110-193 (498)
185 PF13207 AAA_17: AAA domain; P 75.3 1.8 4E-05 33.2 1.7 18 16-33 4-21 (121)
186 cd03247 ABCC_cytochrome_bd The 75.0 6.7 0.00015 32.5 5.2 51 88-138 108-161 (178)
187 PRK11889 flhF flagellar biosyn 74.8 14 0.00029 35.3 7.5 17 13-29 243-259 (436)
188 cd01133 F1-ATPase_beta F1 ATP 74.4 10 0.00022 34.1 6.4 21 88-108 152-175 (274)
189 COG0466 Lon ATP-dependent Lon 74.1 17 0.00037 37.0 8.3 130 16-166 355-510 (782)
190 PRK07261 topology modulation p 74.0 1.6 3.4E-05 36.2 1.1 17 15-31 4-20 (171)
191 COG2401 ABC-type ATPase fused 72.7 6.7 0.00015 37.3 4.9 56 88-143 517-577 (593)
192 cd01131 PilT Pilus retraction 72.5 6.5 0.00014 33.4 4.6 51 83-136 61-111 (198)
193 PRK13538 cytochrome c biogenes 71.9 14 0.00031 31.3 6.6 54 88-141 139-196 (204)
194 PF13730 HTH_36: Helix-turn-he 71.6 11 0.00024 24.4 4.6 48 232-279 2-55 (55)
195 cd03223 ABCD_peroxisomal_ALDP 71.6 19 0.00041 29.5 7.1 48 88-137 101-151 (166)
196 KOG0991 Replication factor C, 70.9 34 0.00073 30.1 8.3 38 180-217 229-267 (333)
197 cd01122 GP4d_helicase GP4d_hel 70.7 25 0.00053 31.3 8.2 14 17-30 36-49 (271)
198 COG1192 Soj ATPases involved i 70.2 2 4.3E-05 38.2 0.9 10 20-29 12-21 (259)
199 COG1223 Predicted ATPase (AAA+ 70.1 19 0.00041 32.2 6.8 102 85-189 199-319 (368)
200 PF12775 AAA_7: P-loop contain 70.1 1.5 3.2E-05 39.5 0.0 18 16-33 38-55 (272)
201 PF02463 SMC_N: RecF/RecN/SMC 69.8 4.4 9.6E-05 34.9 3.0 46 95-140 157-205 (220)
202 PRK04296 thymidine kinase; Pro 69.5 3.1 6.7E-05 35.2 1.9 40 95-136 77-118 (190)
203 PRK09361 radB DNA repair and r 68.7 6.5 0.00014 34.0 3.8 15 16-30 28-42 (225)
204 PF00910 RNA_helicase: RNA hel 68.5 2.8 6E-05 31.7 1.3 14 17-30 4-17 (107)
205 TIGR03499 FlhF flagellar biosy 68.5 16 0.00035 33.0 6.5 16 14-29 197-212 (282)
206 COG1485 Predicted ATPase [Gene 68.3 16 0.00035 33.9 6.3 48 84-134 118-170 (367)
207 PRK12723 flagellar biosynthesi 68.1 26 0.00057 33.2 8.0 14 16-29 179-192 (388)
208 PF13191 AAA_16: AAA ATPase do 68.1 2.9 6.4E-05 34.5 1.5 16 16-31 29-44 (185)
209 PHA02518 ParA-like protein; Pr 67.9 2.5 5.5E-05 35.9 1.1 10 20-29 10-19 (211)
210 KOG1970 Checkpoint RAD17-RFC c 67.6 67 0.0015 31.9 10.5 15 15-29 114-128 (634)
211 PHA02244 ATPase-like protein 66.3 32 0.0007 32.4 8.0 17 17-33 125-141 (383)
212 cd02042 ParA ParA and ParB of 66.2 3 6.5E-05 31.0 1.1 11 19-29 8-18 (104)
213 KOG0733 Nuclear AAA ATPase (VC 66.2 64 0.0014 32.5 10.1 81 84-164 270-374 (802)
214 TIGR01425 SRP54_euk signal rec 66.1 29 0.00062 33.5 7.8 14 16-29 105-118 (429)
215 PF02374 ArsA_ATPase: Anion-tr 66.0 2.4 5.2E-05 38.8 0.6 13 17-29 7-19 (305)
216 KOG2035 Replication factor C, 65.9 84 0.0018 28.5 9.9 118 96-215 126-259 (351)
217 TIGR02858 spore_III_AA stage I 65.8 32 0.00068 30.9 7.7 39 95-136 193-231 (270)
218 PF01656 CbiA: CobQ/CobB/MinD/ 65.8 3 6.4E-05 34.9 1.1 13 17-29 5-17 (195)
219 KOG0733 Nuclear AAA ATPase (VC 65.6 99 0.0021 31.3 11.2 155 7-189 533-718 (802)
220 cd00561 CobA_CobO_BtuR ATP:cor 65.4 7.1 0.00015 32.0 3.2 48 88-135 86-139 (159)
221 KOG0728 26S proteasome regulat 65.4 53 0.0012 29.2 8.6 43 122-164 284-331 (404)
222 CHL00059 atpA ATP synthase CF1 65.2 17 0.00036 35.5 6.1 14 94-107 231-244 (485)
223 COG2842 Uncharacterized ATPase 65.0 15 0.00032 33.2 5.3 77 16-108 99-177 (297)
224 cd03214 ABC_Iron-Siderophores_ 64.9 16 0.00034 30.4 5.3 50 88-137 107-161 (180)
225 COG0194 Gmk Guanylate kinase [ 64.8 4 8.7E-05 34.3 1.6 18 16-33 9-26 (191)
226 PF10443 RNA12: RNA12 protein; 64.7 1.2E+02 0.0026 29.2 11.5 104 94-201 146-284 (431)
227 TIGR01610 phage_O_Nterm phage 64.5 17 0.00037 26.8 4.8 63 228-290 18-89 (95)
228 TIGR01281 DPOR_bchL light-inde 64.3 3 6.6E-05 37.2 0.9 12 18-29 7-18 (268)
229 COG1875 NYN ribonuclease and A 64.2 16 0.00036 34.1 5.5 36 97-135 352-389 (436)
230 cd02040 NifH NifH gene encodes 64.1 3.2 7E-05 36.9 1.1 12 18-29 8-19 (270)
231 cd03246 ABCC_Protease_Secretio 64.0 13 0.00029 30.6 4.7 49 88-138 106-160 (173)
232 COG0003 ArsA Predicted ATPase 64.0 3.5 7.6E-05 38.0 1.2 14 17-30 8-21 (322)
233 cd01132 F1_ATPase_alpha F1 ATP 63.9 20 0.00043 32.3 5.9 15 94-108 159-173 (274)
234 PRK13849 putative crown gall t 63.5 3.5 7.5E-05 36.1 1.1 10 20-29 11-20 (231)
235 PRK06762 hypothetical protein; 63.4 23 0.00049 28.8 6.0 17 16-32 7-23 (166)
236 cd01123 Rad51_DMC1_radA Rad51_ 63.2 11 0.00025 32.6 4.3 16 16-31 24-39 (235)
237 KOG0731 AAA+-type ATPase conta 63.1 1.9E+02 0.0042 30.1 13.2 102 88-191 395-520 (774)
238 KOG0735 AAA+-type ATPase [Post 63.1 1.2E+02 0.0025 31.4 11.3 144 17-189 707-870 (952)
239 PF12802 MarR_2: MarR family; 63.0 20 0.00044 23.5 4.7 52 232-283 2-55 (62)
240 COG1386 scpB Chromosome segreg 63.0 89 0.0019 26.3 9.3 60 233-295 90-156 (184)
241 TIGR02203 MsbA_lipidA lipid A 62.9 16 0.00034 36.5 5.8 59 88-148 479-540 (571)
242 cd03221 ABCF_EF-3 ABCF_EF-3 E 62.9 25 0.00054 28.0 5.9 49 88-138 80-131 (144)
243 TIGR02524 dot_icm_DotB Dot/Icm 62.8 9.3 0.0002 35.9 3.9 45 83-131 199-243 (358)
244 PRK13235 nifH nitrogenase redu 62.7 3.5 7.5E-05 37.0 1.0 12 18-29 8-19 (274)
245 PRK13233 nifH nitrogenase redu 62.7 3.6 7.7E-05 36.9 1.0 11 19-29 10-20 (275)
246 PRK12724 flagellar biosynthesi 62.7 27 0.00058 33.6 6.9 14 16-29 228-241 (432)
247 KOG1968 Replication factor C, 62.4 38 0.00081 35.8 8.4 46 89-136 421-471 (871)
248 PF00485 PRK: Phosphoribulokin 62.3 3.1 6.8E-05 35.2 0.6 18 15-32 3-20 (194)
249 PF12780 AAA_8: P-loop contain 62.3 14 0.00029 33.2 4.7 72 16-114 36-109 (268)
250 cd02036 MinD Bacterial cell di 62.0 3.9 8.4E-05 33.7 1.1 13 17-29 6-18 (179)
251 smart00346 HTH_ICLR helix_turn 62.0 55 0.0012 23.3 8.0 66 239-304 9-76 (91)
252 PRK13232 nifH nitrogenase redu 61.8 3.7 8E-05 36.8 1.0 12 18-29 8-19 (273)
253 PF13238 AAA_18: AAA domain; P 61.6 3.5 7.5E-05 31.7 0.7 15 16-30 3-17 (129)
254 COG0396 sufC Cysteine desulfur 61.5 47 0.001 29.1 7.5 55 88-144 154-214 (251)
255 PRK05917 DNA polymerase III su 61.5 83 0.0018 28.6 9.5 57 95-151 94-154 (290)
256 PRK13230 nitrogenase reductase 61.3 3.8 8.2E-05 36.9 0.9 12 18-29 8-19 (279)
257 PRK05480 uridine/cytidine kina 61.3 4 8.7E-05 34.9 1.1 20 13-32 8-27 (209)
258 COG0563 Adk Adenylate kinase a 61.3 18 0.00039 30.2 5.0 26 16-41 5-30 (178)
259 KOG2004 Mitochondrial ATP-depe 61.2 48 0.001 34.0 8.4 129 17-166 444-598 (906)
260 KOG0744 AAA+-type ATPase [Post 61.1 18 0.00039 33.3 5.1 77 17-107 183-261 (423)
261 PF06564 YhjQ: YhjQ protein; 60.7 4 8.6E-05 36.0 0.9 10 20-29 11-20 (243)
262 PRK10037 cell division protein 60.5 4 8.6E-05 36.1 0.9 10 20-29 11-20 (250)
263 KOG0736 Peroxisome assembly fa 60.4 1.1E+02 0.0023 31.9 10.7 163 17-213 711-898 (953)
264 PRK13231 nitrogenase reductase 60.4 4.2 9.2E-05 36.2 1.1 11 19-29 10-20 (264)
265 PRK08233 hypothetical protein; 60.1 4.5 9.7E-05 33.5 1.1 17 15-31 7-23 (182)
266 TIGR02237 recomb_radB DNA repa 59.9 16 0.00035 31.0 4.6 15 16-30 17-31 (209)
267 KOG1514 Origin recognition com 59.9 1.3E+02 0.0028 30.9 11.1 104 20-131 431-546 (767)
268 COG1121 ZnuC ABC-type Mn/Zn tr 59.8 17 0.00037 32.2 4.7 49 88-138 149-203 (254)
269 KOG0730 AAA+-type ATPase [Post 59.8 86 0.0019 31.8 9.9 71 96-166 527-617 (693)
270 cd02023 UMPK Uridine monophosp 59.4 4.5 9.7E-05 34.2 1.0 17 15-31 3-19 (198)
271 PRK05703 flhF flagellar biosyn 59.4 27 0.00059 33.6 6.4 15 15-29 225-239 (424)
272 TIGR01287 nifH nitrogenase iro 59.2 4.5 9.8E-05 36.2 1.1 13 17-29 6-18 (275)
273 TIGR00235 udk uridine kinase. 59.2 4.6 9.9E-05 34.5 1.1 19 14-32 9-27 (207)
274 PRK13185 chlL protochlorophyll 58.6 4.7 0.0001 36.0 1.1 11 19-29 10-20 (270)
275 cd01393 recA_like RecA is a b 58.6 12 0.00027 32.1 3.7 15 16-30 24-38 (226)
276 PF03215 Rad17: Rad17 cell cyc 58.0 64 0.0014 32.0 8.9 15 15-29 49-63 (519)
277 PF08477 Miro: Miro-like prote 57.7 5.2 0.00011 30.3 1.1 17 16-32 4-20 (119)
278 PRK13768 GTPase; Provisional 57.1 5.4 0.00012 35.4 1.2 14 16-29 7-20 (253)
279 cd02037 MRP-like MRP (Multiple 57.1 5.1 0.00011 32.9 1.0 12 18-29 7-18 (169)
280 TIGR01969 minD_arch cell divis 57.0 4.9 0.00011 35.2 0.9 12 18-29 8-19 (251)
281 PTZ00301 uridine kinase; Provi 56.8 5.4 0.00012 34.4 1.1 17 14-30 6-22 (210)
282 cd02032 Bchl_like This family 56.8 5 0.00011 35.8 0.9 12 18-29 7-18 (267)
283 TIGR02525 plasmid_TraJ plasmid 56.4 15 0.00032 34.7 4.0 35 83-117 212-246 (372)
284 PRK12727 flagellar biosynthesi 56.3 25 0.00055 34.8 5.6 14 16-29 355-368 (559)
285 TIGR02868 CydC thiol reductant 56.2 22 0.00048 35.1 5.5 19 88-106 480-498 (529)
286 cd01983 Fer4_NifH The Fer4_Nif 56.0 6.5 0.00014 28.1 1.3 14 17-30 5-18 (99)
287 PF07724 AAA_2: AAA domain (Cd 55.9 6.9 0.00015 32.5 1.6 17 16-32 8-24 (171)
288 PRK09281 F0F1 ATP synthase sub 55.9 23 0.0005 34.8 5.4 14 95-108 253-266 (502)
289 CHL00072 chlL photochlorophyll 55.6 5.4 0.00012 36.2 0.9 13 17-29 6-18 (290)
290 COG4608 AppF ABC-type oligopep 55.6 16 0.00035 32.6 3.8 52 88-140 119-176 (268)
291 PF06144 DNA_pol3_delta: DNA p 55.3 68 0.0015 26.0 7.5 97 95-193 56-164 (172)
292 PRK00279 adk adenylate kinase; 55.3 54 0.0012 28.0 7.2 25 16-40 5-29 (215)
293 TIGR01420 pilT_fam pilus retra 55.2 18 0.00039 33.7 4.4 48 83-133 182-229 (343)
294 cd01129 PulE-GspE PulE/GspE Th 55.0 21 0.00046 31.9 4.6 34 84-117 137-170 (264)
295 PF14532 Sigma54_activ_2: Sigm 54.9 31 0.00068 27.1 5.2 39 96-134 69-110 (138)
296 KOG2227 Pre-initiation complex 54.9 2.1E+02 0.0047 27.9 11.3 57 143-200 317-373 (529)
297 cd03111 CpaE_like This protein 54.7 6.4 0.00014 29.7 1.1 11 19-29 8-18 (106)
298 COG2607 Predicted ATPase (AAA+ 54.7 45 0.00098 29.5 6.3 47 89-135 130-184 (287)
299 PRK13343 F0F1 ATP synthase sub 54.5 23 0.00049 34.8 5.0 15 94-108 252-266 (502)
300 cd03282 ABC_MSH4_euk MutS4 hom 54.5 54 0.0012 28.0 6.9 45 94-140 106-157 (204)
301 PRK13657 cyclic beta-1,2-gluca 54.3 44 0.00096 33.6 7.4 59 88-148 481-542 (588)
302 cd02117 NifH_like This family 54.3 6.2 0.00014 33.8 1.1 12 18-29 7-18 (212)
303 TIGR03375 type_I_sec_LssB type 54.1 19 0.00041 37.1 4.7 19 88-106 611-629 (694)
304 COG5635 Predicted NTPase (NACH 53.8 19 0.00042 37.9 4.8 124 89-216 298-449 (824)
305 cd02025 PanK Pantothenate kina 53.7 6.8 0.00015 34.0 1.2 17 15-31 3-19 (220)
306 TIGR01817 nifA Nif-specific re 53.4 1.4E+02 0.003 29.7 10.5 17 17-33 225-241 (534)
307 PRK11176 lipid transporter ATP 53.3 17 0.00036 36.5 4.1 59 88-148 490-551 (582)
308 PRK12726 flagellar biosynthesi 53.3 71 0.0015 30.4 7.8 14 16-29 211-224 (407)
309 COG0488 Uup ATPase components 52.7 34 0.00073 34.0 6.0 60 88-150 449-511 (530)
310 TIGR03324 alt_F1F0_F1_al alter 52.6 48 0.001 32.6 6.8 14 94-107 252-265 (497)
311 cd03110 Fer4_NifH_child This p 52.4 7 0.00015 32.3 1.1 13 17-29 6-18 (179)
312 PRK06696 uridine kinase; Valid 52.1 7 0.00015 33.9 1.1 19 13-31 24-42 (223)
313 PF13545 HTH_Crp_2: Crp-like h 52.1 27 0.00059 24.0 4.0 45 248-293 26-71 (76)
314 cd03281 ABC_MSH5_euk MutS5 hom 52.0 45 0.00097 28.7 6.1 49 92-140 104-160 (213)
315 PRK10818 cell division inhibit 51.6 6.9 0.00015 34.9 1.0 11 19-29 11-21 (270)
316 PF08423 Rad51: Rad51; InterP 51.6 6.9 0.00015 34.8 0.9 14 16-29 43-56 (256)
317 TIGR02788 VirB11 P-type DNA tr 51.4 50 0.0011 30.2 6.6 33 83-115 205-237 (308)
318 TIGR03371 cellulose_yhjQ cellu 50.6 7.2 0.00016 34.1 0.9 11 19-29 10-20 (246)
319 KOG0743 AAA+-type ATPase [Post 50.6 63 0.0014 31.1 7.1 71 124-199 338-413 (457)
320 cd00880 Era_like Era (E. coli 50.5 10 0.00022 29.7 1.7 17 17-33 2-18 (163)
321 PF07015 VirC1: VirC1 protein; 50.5 7.9 0.00017 33.8 1.1 10 20-29 11-20 (231)
322 CHL00175 minD septum-site dete 50.1 7.8 0.00017 34.8 1.1 11 19-29 24-34 (281)
323 PF02082 Rrf2: Transcriptional 50.1 76 0.0016 22.5 6.1 53 237-289 10-67 (83)
324 COG0572 Udk Uridine kinase [Nu 50.1 9.7 0.00021 32.9 1.6 19 14-32 11-29 (218)
325 PRK13236 nitrogenase reductase 50.1 7.4 0.00016 35.4 0.9 14 16-29 11-24 (296)
326 smart00419 HTH_CRP helix_turn_ 49.9 46 0.00099 20.3 4.4 39 251-290 9-48 (48)
327 TIGR01968 minD_bact septum sit 49.7 8 0.00017 34.0 1.1 12 18-29 9-20 (261)
328 PRK14722 flhF flagellar biosyn 49.5 38 0.00083 32.0 5.5 15 16-30 142-156 (374)
329 TIGR01846 type_I_sec_HlyB type 49.3 33 0.00071 35.3 5.6 51 88-138 603-656 (694)
330 PRK11174 cysteine/glutathione 49.3 37 0.0008 34.1 5.9 47 88-134 495-545 (588)
331 PF00448 SRP54: SRP54-type pro 49.2 7 0.00015 33.3 0.6 14 16-29 6-19 (196)
332 PRK09280 F0F1 ATP synthase sub 49.2 48 0.001 32.3 6.2 20 88-107 227-249 (463)
333 TIGR01313 therm_gnt_kin carboh 49.1 13 0.00027 30.2 2.1 17 16-32 3-19 (163)
334 cd03287 ABC_MSH3_euk MutS3 hom 49.1 28 0.00061 30.2 4.3 44 95-139 109-159 (222)
335 PRK14737 gmk guanylate kinase; 48.9 10 0.00023 31.8 1.6 18 16-33 9-26 (186)
336 TIGR01128 holA DNA polymerase 48.8 1.6E+02 0.0035 26.3 9.6 98 94-193 44-151 (302)
337 TIGR02322 phosphon_PhnN phosph 48.7 9 0.00019 31.7 1.2 17 16-32 6-22 (179)
338 COG1428 Deoxynucleoside kinase 48.6 8.7 0.00019 32.9 1.1 15 16-30 9-23 (216)
339 PF00392 GntR: Bacterial regul 48.6 58 0.0013 21.7 5.1 37 251-287 24-62 (64)
340 PF07726 AAA_3: ATPase family 48.6 8.2 0.00018 30.4 0.8 15 19-33 7-21 (131)
341 cd02021 GntK Gluconate kinase 48.6 13 0.00028 29.6 2.1 18 16-33 4-21 (150)
342 COG1100 GTPase SAR1 and relate 48.5 8.5 0.00018 32.8 1.0 20 13-32 7-26 (219)
343 cd04139 RalA_RalB RalA/RalB su 48.3 8.1 0.00018 30.9 0.8 18 15-32 4-21 (164)
344 CHL00206 ycf2 Ycf2; Provisiona 48.1 2E+02 0.0044 33.5 11.2 66 95-160 1731-1813(2281)
345 COG1117 PstB ABC-type phosphat 48.1 51 0.0011 28.7 5.5 46 88-135 159-210 (253)
346 COG3640 CooC CO dehydrogenase 48.1 8.5 0.00018 33.6 0.9 16 15-30 4-19 (255)
347 PRK13409 putative ATPase RIL; 48.0 47 0.001 33.5 6.3 136 14-150 368-529 (590)
348 KOG0062 ATPase component of AB 48.0 47 0.001 32.6 5.9 50 88-139 208-260 (582)
349 KOG0058 Peptide exporter, ABC 47.7 57 0.0012 33.3 6.6 47 88-136 614-666 (716)
350 COG3355 Predicted transcriptio 47.6 74 0.0016 24.9 5.9 60 222-283 15-76 (126)
351 TIGR00554 panK_bact pantothena 47.6 9.2 0.0002 34.7 1.1 19 12-30 63-81 (290)
352 PF13479 AAA_24: AAA domain 47.6 9.2 0.0002 32.9 1.1 16 16-31 8-23 (213)
353 PRK00131 aroK shikimate kinase 47.6 13 0.00029 30.2 2.0 19 16-34 9-27 (175)
354 PRK11545 gntK gluconate kinase 47.5 16 0.00035 29.9 2.5 25 18-42 2-26 (163)
355 TIGR01192 chvA glucan exporter 47.4 41 0.00089 33.9 5.8 59 88-148 481-542 (585)
356 PHA00729 NTP-binding motif con 47.4 9.6 0.00021 33.2 1.2 18 15-32 21-38 (226)
357 PLN03130 ABC transporter C fam 47.2 59 0.0013 37.2 7.4 20 88-107 750-769 (1622)
358 TIGR00962 atpA proton transloc 47.1 42 0.0009 33.1 5.6 15 94-108 251-265 (501)
359 PF03266 NTPase_1: NTPase; In 47.1 11 0.00024 31.2 1.4 18 16-33 4-21 (168)
360 TIGR02857 CydD thiol reductant 46.9 88 0.0019 30.9 8.1 49 88-136 468-519 (529)
361 PRK13234 nifH nitrogenase redu 46.5 9.6 0.00021 34.7 1.1 12 18-29 11-22 (295)
362 COG1124 DppF ABC-type dipeptid 46.3 9.7 0.00021 33.4 1.0 17 15-31 37-53 (252)
363 PRK06547 hypothetical protein; 46.2 10 0.00022 31.5 1.1 17 16-32 20-36 (172)
364 cd01864 Rab19 Rab19 subfamily. 45.8 7.7 0.00017 31.4 0.3 19 13-31 5-23 (165)
365 PF04079 DUF387: Putative tran 45.5 1.1E+02 0.0025 25.0 7.1 94 185-283 9-127 (159)
366 cd00820 PEPCK_HprK Phosphoenol 45.2 11 0.00024 28.6 1.1 16 16-31 20-35 (107)
367 PRK10078 ribose 1,5-bisphospho 45.2 11 0.00024 31.5 1.2 18 16-33 7-24 (186)
368 PRK12597 F0F1 ATP synthase sub 45.0 65 0.0014 31.4 6.5 20 88-107 226-248 (461)
369 cd00464 SK Shikimate kinase (S 45.0 15 0.00034 29.2 2.0 25 16-40 4-28 (154)
370 COG2274 SunT ABC-type bacterio 44.9 55 0.0012 33.8 6.3 19 88-106 619-637 (709)
371 cd00071 GMPK Guanosine monopho 44.9 11 0.00025 29.8 1.2 17 16-32 4-20 (137)
372 TIGR01360 aden_kin_iso1 adenyl 44.9 15 0.00033 30.3 2.0 17 16-32 8-24 (188)
373 cd02034 CooC The accessory pro 44.9 12 0.00025 28.9 1.2 15 16-30 4-18 (116)
374 cd02024 NRK1 Nicotinamide ribo 44.8 11 0.00024 31.8 1.1 19 15-33 3-21 (187)
375 PRK06581 DNA polymerase III su 44.8 1.9E+02 0.0041 25.7 8.6 71 94-164 87-161 (263)
376 TIGR02016 BchX chlorophyllide 44.6 11 0.00023 34.4 1.1 12 18-29 7-18 (296)
377 PRK13947 shikimate kinase; Pro 44.5 16 0.00036 29.8 2.1 22 16-37 6-27 (171)
378 COG4088 Predicted nucleotide k 44.5 27 0.00058 30.1 3.3 14 16-29 6-19 (261)
379 PRK14721 flhF flagellar biosyn 44.1 79 0.0017 30.4 6.8 16 14-29 194-209 (420)
380 COG4639 Predicted kinase [Gene 44.1 23 0.0005 29.0 2.7 20 17-36 8-27 (168)
381 KOG0730 AAA+-type ATPase [Post 44.1 2E+02 0.0044 29.2 9.7 103 84-189 265-386 (693)
382 PRK00300 gmk guanylate kinase; 44.1 12 0.00025 31.8 1.2 18 15-32 9-26 (205)
383 smart00173 RAS Ras subfamily o 44.1 12 0.00026 30.1 1.2 16 16-31 5-20 (164)
384 cd01918 HprK_C HprK/P, the bif 43.9 13 0.00027 30.2 1.3 14 16-29 19-32 (149)
385 PRK05439 pantothenate kinase; 43.8 11 0.00025 34.5 1.1 18 13-30 88-105 (311)
386 PF03193 DUF258: Protein of un 43.8 11 0.00024 30.9 0.9 17 16-32 40-56 (161)
387 TIGR02782 TrbB_P P-type conjug 43.7 37 0.00081 30.9 4.5 33 84-116 192-224 (299)
388 TIGR01842 type_I_sec_PrtD type 43.7 60 0.0013 32.3 6.3 59 88-148 464-526 (544)
389 PRK13705 plasmid-partitioning 43.6 11 0.00024 35.8 1.0 10 20-29 116-125 (388)
390 PRK07667 uridine kinase; Provi 43.6 12 0.00025 31.7 1.1 19 13-31 19-37 (193)
391 cd02019 NK Nucleoside/nucleoti 43.5 14 0.00031 25.3 1.3 15 17-31 5-19 (69)
392 PRK08927 fliI flagellum-specif 43.5 42 0.00091 32.4 4.9 14 94-107 246-259 (442)
393 cd02027 APSK Adenosine 5'-phos 43.3 94 0.002 24.8 6.4 17 17-33 5-21 (149)
394 PF01978 TrmB: Sugar-specific 43.2 27 0.00058 23.7 2.7 51 232-283 5-56 (68)
395 PRK11160 cysteine/glutathione 43.2 91 0.002 31.3 7.5 19 88-106 485-503 (574)
396 PRK10141 DNA-binding transcrip 43.1 1.5E+02 0.0032 22.9 7.0 70 229-299 9-83 (117)
397 PHA02519 plasmid partition pro 43.0 11 0.00024 35.8 1.0 10 20-29 116-125 (387)
398 cd04119 RJL RJL (RabJ-Like) su 43.0 15 0.00032 29.5 1.6 17 16-32 5-21 (168)
399 TIGR01039 atpD ATP synthase, F 43.0 78 0.0017 30.8 6.6 20 88-107 226-248 (461)
400 PRK10790 putative multidrug tr 43.0 51 0.0011 33.1 5.8 16 16-31 372-387 (592)
401 cd03114 ArgK-like The function 42.9 14 0.0003 29.8 1.3 15 15-29 3-17 (148)
402 PRK06002 fliI flagellum-specif 42.7 24 0.00052 34.1 3.2 15 94-108 252-266 (450)
403 TIGR01193 bacteriocin_ABC ABC- 42.7 38 0.00082 35.0 4.9 47 88-134 621-670 (708)
404 cd01130 VirB11-like_ATPase Typ 42.6 13 0.00028 31.2 1.2 34 83-116 87-120 (186)
405 COG1618 Predicted nucleotide k 42.4 12 0.00026 30.8 0.9 18 15-32 9-26 (179)
406 TIGR03453 partition_RepA plasm 42.2 11 0.00025 35.6 0.9 10 20-29 114-123 (387)
407 cd04103 Centaurin_gamma Centau 42.2 13 0.00029 30.1 1.2 16 15-30 4-19 (158)
408 cd00227 CPT Chloramphenicol (C 42.1 13 0.00029 30.7 1.2 17 16-32 7-23 (175)
409 PRK14738 gmk guanylate kinase; 42.1 13 0.00028 31.8 1.1 17 16-32 18-34 (206)
410 cd04113 Rab4 Rab4 subfamily. 42.0 13 0.00029 29.7 1.2 16 16-31 5-20 (161)
411 cd03284 ABC_MutS1 MutS1 homolo 41.5 1E+02 0.0022 26.5 6.7 43 95-138 108-157 (216)
412 TIGR03796 NHPM_micro_ABC1 NHPM 41.5 27 0.00059 36.0 3.6 47 88-135 625-674 (710)
413 PF00071 Ras: Ras family; Int 41.4 12 0.00025 30.1 0.7 16 16-31 4-19 (162)
414 PF00437 T2SE: Type II/IV secr 41.4 78 0.0017 28.1 6.2 47 81-131 182-228 (270)
415 cd00092 HTH_CRP helix_turn_hel 41.3 77 0.0017 20.9 4.8 41 251-291 26-67 (67)
416 TIGR00064 ftsY signal recognit 41.2 14 0.0003 33.2 1.2 14 16-29 77-90 (272)
417 PRK06217 hypothetical protein; 41.1 14 0.0003 30.8 1.2 15 16-30 6-20 (183)
418 TIGR00958 3a01208 Conjugate Tr 41.0 1.3E+02 0.0028 31.1 8.4 19 88-106 627-645 (711)
419 TIGR01359 UMP_CMP_kin_fam UMP- 40.9 20 0.00044 29.6 2.2 18 16-33 4-21 (183)
420 COG3598 RepA RecA-family ATPas 40.9 27 0.00058 32.2 2.9 13 17-29 95-107 (402)
421 PRK14723 flhF flagellar biosyn 40.8 88 0.0019 32.6 6.9 40 95-134 294-335 (767)
422 cd04123 Rab21 Rab21 subfamily. 40.8 15 0.00032 29.2 1.2 19 15-33 4-22 (162)
423 cd02028 UMPK_like Uridine mono 40.7 14 0.00029 30.9 1.0 17 15-31 3-19 (179)
424 cd04101 RabL4 RabL4 (Rab-like4 40.6 13 0.00027 29.9 0.8 16 15-30 4-19 (164)
425 TIGR03263 guanyl_kin guanylate 40.6 14 0.00031 30.4 1.2 17 16-32 6-22 (180)
426 COG2109 BtuR ATP:corrinoid ade 40.6 44 0.00095 28.2 3.9 48 88-135 113-166 (198)
427 TIGR01618 phage_P_loop phage n 40.6 14 0.00031 32.0 1.2 16 16-31 17-32 (220)
428 cd01120 RecA-like_NTPases RecA 40.5 15 0.00032 29.2 1.2 16 16-31 4-19 (165)
429 PLN03232 ABC transporter C fam 40.5 82 0.0018 35.8 7.3 20 88-107 750-769 (1495)
430 TIGR01818 ntrC nitrogen regula 40.1 1.2E+02 0.0027 29.1 7.8 16 18-33 164-179 (463)
431 COG1131 CcmA ABC-type multidru 40.1 64 0.0014 29.3 5.4 50 88-139 146-202 (293)
432 TIGR02768 TraA_Ti Ti-type conj 39.8 88 0.0019 32.6 7.0 34 96-131 439-474 (744)
433 cd04120 Rab12 Rab12 subfamily. 39.8 15 0.00032 31.4 1.1 16 16-31 5-20 (202)
434 PF10662 PduV-EutP: Ethanolami 39.7 16 0.00034 29.4 1.2 18 16-33 6-23 (143)
435 cd04150 Arf1_5_like Arf1-Arf5- 39.6 14 0.00029 29.9 0.9 16 16-31 5-20 (159)
436 cd04110 Rab35 Rab35 subfamily. 39.5 15 0.00033 31.0 1.2 19 13-31 8-26 (199)
437 TIGR03815 CpaE_hom_Actino heli 39.4 14 0.00029 34.1 0.9 10 20-29 103-112 (322)
438 PRK09270 nucleoside triphospha 39.3 15 0.00032 32.0 1.1 19 13-31 35-53 (229)
439 cd01121 Sms Sms (bacterial rad 39.3 67 0.0015 30.3 5.6 13 19-31 90-102 (372)
440 PRK15429 formate hydrogenlyase 39.3 1E+02 0.0022 31.8 7.3 17 17-33 405-421 (686)
441 cd01860 Rab5_related Rab5-rela 39.3 18 0.00039 28.9 1.6 18 16-33 6-23 (163)
442 PRK03839 putative kinase; Prov 39.0 22 0.00048 29.4 2.1 18 16-33 5-22 (180)
443 PRK13869 plasmid-partitioning 38.9 14 0.0003 35.4 0.9 10 20-29 131-140 (405)
444 cd04115 Rab33B_Rab33A Rab33B/R 38.7 16 0.00035 29.7 1.2 18 15-32 6-23 (170)
445 KOG0651 26S proteasome regulat 38.7 57 0.0012 30.0 4.6 19 16-34 171-189 (388)
446 cd04138 H_N_K_Ras_like H-Ras/N 38.6 16 0.00035 29.0 1.2 16 16-31 6-21 (162)
447 cd02038 FleN-like FleN is a me 38.6 1.9E+02 0.0041 22.7 7.4 13 17-29 6-18 (139)
448 cd01862 Rab7 Rab7 subfamily. 38.2 15 0.00032 29.7 0.8 18 15-32 4-21 (172)
449 cd01135 V_A-ATPase_B V/A-type 38.1 91 0.002 28.1 5.9 15 94-108 164-178 (276)
450 cd04162 Arl9_Arfrp2_like Arl9/ 38.0 17 0.00036 29.6 1.2 17 16-32 4-20 (164)
451 PRK07132 DNA polymerase III su 37.9 3.2E+02 0.0069 24.9 13.1 93 95-195 89-185 (299)
452 PRK13695 putative NTPase; Prov 37.9 20 0.00043 29.5 1.6 17 16-32 5-21 (174)
453 cd00879 Sar1 Sar1 subfamily. 37.7 15 0.00032 30.5 0.8 19 14-32 22-40 (190)
454 COG0542 clpA ATP-binding subun 37.6 79 0.0017 32.9 6.0 69 95-164 261-346 (786)
455 cd04117 Rab15 Rab15 subfamily. 37.5 17 0.00037 29.3 1.1 15 16-30 5-19 (161)
456 cd04124 RabL2 RabL2 subfamily. 37.5 17 0.00037 29.3 1.2 16 16-31 5-20 (161)
457 cd04140 ARHI_like ARHI subfami 37.5 15 0.00033 29.6 0.9 17 15-31 5-21 (165)
458 PF13521 AAA_28: AAA domain; P 37.4 16 0.00034 29.7 0.9 18 16-33 4-21 (163)
459 TIGR02204 MsbA_rel ABC transpo 37.3 79 0.0017 31.6 6.1 19 88-106 486-504 (576)
460 TIGR00281 segregation and cond 37.3 1.5E+02 0.0032 25.1 6.7 47 233-282 85-131 (186)
461 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 37.3 17 0.00038 29.2 1.2 17 15-31 6-22 (166)
462 cd04135 Tc10 TC10 subfamily. 37.2 17 0.00038 29.5 1.2 14 16-29 5-18 (174)
463 PRK11670 antiporter inner memb 37.2 16 0.00034 34.5 0.9 10 20-29 117-126 (369)
464 PRK12338 hypothetical protein; 37.0 24 0.00051 32.5 2.1 25 16-40 9-33 (319)
465 TIGR03305 alt_F1F0_F1_bet alte 37.0 24 0.00052 34.2 2.2 20 88-107 221-243 (449)
466 PRK13918 CRP/FNR family transc 37.0 1.1E+02 0.0024 25.4 6.2 41 251-292 150-191 (202)
467 TIGR02528 EutP ethanolamine ut 36.9 16 0.00035 28.6 0.9 16 15-30 4-19 (142)
468 TIGR00455 apsK adenylylsulfate 36.9 1.7E+02 0.0037 24.1 7.2 17 16-32 23-39 (184)
469 PTZ00133 ADP-ribosylation fact 36.8 18 0.00038 30.1 1.2 18 14-31 20-37 (182)
470 PRK10751 molybdopterin-guanine 36.3 19 0.0004 30.0 1.2 17 14-30 9-25 (173)
471 PF13412 HTH_24: Winged helix- 36.2 1.1E+02 0.0023 18.9 4.8 45 235-280 3-48 (48)
472 PRK00625 shikimate kinase; Pro 36.1 26 0.00057 29.1 2.1 18 16-33 5-22 (173)
473 smart00174 RHO Rho (Ras homolo 36.0 19 0.00041 29.3 1.2 15 16-30 3-17 (174)
474 COG2894 MinD Septum formation 36.0 14 0.00029 32.1 0.3 14 16-29 8-21 (272)
475 PRK03731 aroL shikimate kinase 35.8 27 0.00058 28.5 2.1 22 16-37 7-28 (171)
476 cd04136 Rap_like Rap-like subf 35.7 19 0.00042 28.7 1.2 15 16-30 6-20 (163)
477 PF00625 Guanylate_kin: Guanyl 35.7 25 0.00053 29.3 1.9 16 16-31 7-22 (183)
478 cd04146 RERG_RasL11_like RERG/ 35.6 17 0.00037 29.3 0.8 15 16-30 4-18 (165)
479 PF00142 Fer4_NifH: 4Fe-4S iro 35.4 19 0.0004 32.2 1.1 15 15-29 4-18 (273)
480 PF00693 Herpes_TK: Thymidine 35.2 20 0.00044 32.2 1.3 13 18-30 1-13 (281)
481 cd01876 YihA_EngB The YihA (En 35.2 18 0.00038 28.8 0.9 18 15-32 3-20 (170)
482 cd00882 Ras_like_GTPase Ras-li 35.2 25 0.00055 26.8 1.8 17 17-33 2-18 (157)
483 PRK07721 fliI flagellum-specif 35.0 55 0.0012 31.7 4.3 13 94-106 246-258 (438)
484 PTZ00132 GTP-binding nuclear p 34.9 17 0.00036 31.1 0.7 18 12-29 10-27 (215)
485 PRK15115 response regulator Gl 34.8 50 0.0011 31.7 4.1 18 17-34 163-180 (444)
486 cd04131 Rnd Rnd subfamily. Th 34.7 20 0.00044 29.7 1.2 15 16-30 6-20 (178)
487 cd04141 Rit_Rin_Ric Rit/Rin/Ri 34.5 21 0.00045 29.3 1.2 16 16-31 7-22 (172)
488 TIGR03697 NtcA_cyano global ni 34.5 1.6E+02 0.0034 24.3 6.7 42 250-292 143-185 (193)
489 PRK11920 rirA iron-responsive 34.5 1.3E+02 0.0028 24.3 5.8 61 236-296 9-82 (153)
490 cd04129 Rho2 Rho2 subfamily. 34.5 18 0.00039 30.1 0.9 18 14-31 4-21 (187)
491 PF03849 Tfb2: Transcription f 34.4 1.9E+02 0.0042 27.2 7.8 76 228-304 23-105 (366)
492 COG1066 Sms Predicted ATP-depe 34.4 80 0.0017 30.2 5.0 23 84-106 156-178 (456)
493 PRK06936 type III secretion sy 34.3 35 0.00076 32.9 2.8 15 94-108 250-264 (439)
494 smart00534 MUTSac ATPase domai 34.2 94 0.002 25.8 5.2 43 96-139 78-127 (185)
495 cd01394 radB RadB. The archaea 34.0 23 0.00049 30.3 1.4 15 16-30 24-38 (218)
496 cd04154 Arl2 Arl2 subfamily. 33.9 21 0.00046 29.1 1.2 18 15-32 18-35 (173)
497 PRK08972 fliI flagellum-specif 33.9 31 0.00067 33.3 2.4 15 94-108 250-264 (444)
498 cd04127 Rab27A Rab27a subfamil 33.8 21 0.00046 29.2 1.2 17 14-30 7-23 (180)
499 COG1116 TauB ABC-type nitrate/ 33.7 21 0.00046 31.4 1.2 20 88-107 140-159 (248)
500 PRK06731 flhF flagellar biosyn 33.6 2.4E+02 0.0053 25.3 7.9 14 16-29 80-93 (270)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-46 Score=379.17 Aligned_cols=284 Identities=24% Similarity=0.298 Sum_probs=238.0
Q ss_pred hhcccCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccC-CCC---CCHHH
Q 045618 12 AELNRATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQ-IRT---PNLPE 87 (349)
Q Consensus 12 ~~~~~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~-~~~---~~~~~ 87 (349)
+.++..||||+||||||+..|+.... + .+.|..+.||.+++..+...++.+|+..+..... ... .....
T Consensus 180 ~iv~i~GMGGvGKTTL~~qi~N~~~~--v-----~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~ 252 (889)
T KOG4658|consen 180 GIVGIYGMGGVGKTTLARQIFNKFDE--V-----GNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELAS 252 (889)
T ss_pred CEEEEECCCcccHHHHHHHHhcccch--h-----cccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHH
Confidence 56778999999999999966543221 1 1222444445555555999999999998833222 222 12333
Q ss_pred HHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchhhcc-cCcccEEEcCCCChHhHHHHHHHhhcc
Q 045618 88 YVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRVLDN-FGVGNIYKVNGLKYREALELFCNCAFK 166 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~a~~ 166 (349)
.+.+.|+++|+||||||||+..+|+.+...++...+||+|++|||++.++.. ++....++++.|+++|||+||++.++.
T Consensus 253 ~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~ 332 (889)
T KOG4658|consen 253 KLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGP 332 (889)
T ss_pred HHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcc
Confidence 9999999999999999999999999999999888889999999999999988 777789999999999999999999977
Q ss_pred CC-CCChhHHHHHHHHHHHcCCCchHHHHHhHHhccC-CHHHHHHHHHHhhcC-----C--CCcHHHHHHHhHhcCChhH
Q 045618 167 EN-HCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQK-SKLDWESALDNLKRI-----S--DPDIYDVLKISYNEIKAEE 237 (349)
Q Consensus 167 ~~-~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~-~~~~~~~~l~~l~~~-----~--~~~l~~~l~~s~~~L~~~~ 237 (349)
.. ...+..+++|++++++|+|+|||+.++|+.|+.+ +..+|..+.+.+... + ...+..++.+||+.||++.
T Consensus 333 ~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~l 412 (889)
T KOG4658|consen 333 NTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEEL 412 (889)
T ss_pred ccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHH
Confidence 63 4445589999999999999999999999999985 678999999988665 1 3568899999999999889
Q ss_pred HHHHHHhcccCCC--CCHHHHHHHhccc-c------------cHHHhHHHHhhCcceEEcCC----CeEEecHHHHHHHH
Q 045618 238 KSLFLDIACFFNG--QDKDSVLKMIGDS-S------------FAHYGLNVLVDKSLVTVSRG----NQLQMHDLLQEMGR 298 (349)
Q Consensus 238 ~~~f~~la~fp~~--~~~~~l~~~~~~~-~------------~~~~~l~~L~~~sLl~~~~~----~~~~mH~lv~~~a~ 298 (349)
|.||+|||+||++ ++++.++.+|.++ + .+..++++|++++|+..... .++.|||+||++|.
T Consensus 413 K~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al 492 (889)
T KOG4658|consen 413 KSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMAL 492 (889)
T ss_pred HHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHH
Confidence 9999999999999 9999999999998 3 45678999999999997642 56999999999999
Q ss_pred HHHh
Q 045618 299 EIVR 302 (349)
Q Consensus 299 ~~~~ 302 (349)
++++
T Consensus 493 ~ias 496 (889)
T KOG4658|consen 493 WIAS 496 (889)
T ss_pred HHhc
Confidence 9999
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.7e-44 Score=379.47 Aligned_cols=323 Identities=33% Similarity=0.522 Sum_probs=267.5
Q ss_pred HhhcccCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhh----------hccHHHHHHHHHHHhhcccCC
Q 045618 11 LAELNRATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESR----------SIMNQRVSNKFLGWLVEQEQI 80 (349)
Q Consensus 11 ~~~~~~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~----------~~~~~~l~~~il~~l~~~~~~ 80 (349)
.+..+..||||+||||||+..|....- .+....|.. ..++.... ......++++++.++.+....
T Consensus 207 ~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~----~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~ 281 (1153)
T PLN03210 207 VRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFID----RAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI 281 (1153)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEee----ccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc
Confidence 345678899999999999977654221 111111110 00111110 112345677778777655444
Q ss_pred CCCCHHHHHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchhhcccCcccEEEcCCCChHhHHHHH
Q 045618 81 RTPNLPEYVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRVLDNFGVGNIYKVNGLKYREALELF 160 (349)
Q Consensus 81 ~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~~~~~~~l~~L~~~ea~~L~ 160 (349)
..... ..+++.|.++|+||||||||+..+|+.+.....+.++|++||||||++.++...+...+|+++.|+.++|++||
T Consensus 282 ~~~~~-~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF 360 (1153)
T PLN03210 282 KIYHL-GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMF 360 (1153)
T ss_pred ccCCH-HHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHH
Confidence 44333 46889999999999999999999999998877777899999999999999877767789999999999999999
Q ss_pred HHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhccCCHHHHHHHHHHhhcCCCCcHHHHHHHhHhcCCh-hHHH
Q 045618 161 CNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQKSKLDWESALDNLKRISDPDIYDVLKISYNEIKA-EEKS 239 (349)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~-~~~~ 239 (349)
++.||+...++..+.+++++|+++|+|+||||+++|++|++++..+|+++++++++..+..+..+|++||+.|++ ..|.
T Consensus 361 ~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~ 440 (1153)
T PLN03210 361 CRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKA 440 (1153)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhh
Confidence 999998877777889999999999999999999999999999999999999999988888899999999999986 5899
Q ss_pred HHHHhcccCCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHHHHHHHHHHHhhhcCCCCCCeeeeccc
Q 045618 240 LFLDIACFFNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDLLQEMGREIVRQESIEQPGKRSRLWYY 318 (349)
Q Consensus 240 ~f~~la~fp~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~lv~~~a~~~~~~e~~~~~~~~~rl~~~ 318 (349)
||+++|+|+++.+.+.+..++... ..++..++.|+++||++.. .++|.||||+|++|++++++++ ..|++|+|+|..
T Consensus 441 ~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~ 518 (1153)
T PLN03210 441 IFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDA 518 (1153)
T ss_pred hhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCH
Confidence 999999999998888877777666 7788889999999999987 6789999999999999999987 689999999999
Q ss_pred hhHHHHHhcccccceEEeeeeec
Q 045618 319 EDVYNVLKKTKVRIYLAFVATVI 341 (349)
Q Consensus 319 ~d~~~~~~~~~~~~~~~~~~~~~ 341 (349)
+|+++++.+++|++.+.++....
T Consensus 519 ~di~~vl~~~~g~~~v~~i~l~~ 541 (1153)
T PLN03210 519 KDICDVLEDNTGTKKVLGITLDI 541 (1153)
T ss_pred HHHHHHHHhCcccceeeEEEecc
Confidence 99999999999988888776543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8.2e-38 Score=284.41 Aligned_cols=245 Identities=29% Similarity=0.416 Sum_probs=181.6
Q ss_pred HHhhcccCCCCCchhhHHHHHHhhh-hcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccC-C-CCCCHH
Q 045618 10 LLAELNRATSCGIVKIRRCLMVFRL-CSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQ-I-RTPNLP 86 (349)
Q Consensus 10 ~~~~~~~~~~gGiGKT~la~~~f~~-~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~-~-~~~~~~ 86 (349)
....+...||||+|||+||..++.. ....++.. ..|+......+...++.+|+..+..... . ...+..
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~---------v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 88 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDG---------VIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIE 88 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTE---------EEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHH
T ss_pred CeEEEEEEcCCcCCcceeeeeccccccccccccc---------ccccccccccccccccccccccccccccccccccccc
Confidence 3444557889999999999976633 11122222 2345555555668888999999854422 1 223333
Q ss_pred ---HHHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchhhcccCc-ccEEEcCCCChHhHHHHHHH
Q 045618 87 ---EYVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRVLDNFGV-GNIYKVNGLKYREALELFCN 162 (349)
Q Consensus 87 ---~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~~-~~~~~l~~L~~~ea~~L~~~ 162 (349)
..+++.|.++++||||||||+...|+.+...++....+++||||||++.++...+. ...+++++|+.+||++||.+
T Consensus 89 ~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~ 168 (287)
T PF00931_consen 89 ELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKK 168 (287)
T ss_dssp HHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHH
T ss_pred cccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 38999999999999999999999998888777666779999999999988876643 67899999999999999999
Q ss_pred hhccCC-CCChhHHHHHHHHHHHcCCCchHHHHHhHHhcc-CCHHHHHHHHHHhhcCC------CCcHHHHHHHhHhcCC
Q 045618 163 CAFKEN-HCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQ-KSKLDWESALDNLKRIS------DPDIYDVLKISYNEIK 234 (349)
Q Consensus 163 ~a~~~~-~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~-~~~~~~~~~l~~l~~~~------~~~l~~~l~~s~~~L~ 234 (349)
.++... ...+...+.+.+|++.|+|+||||+++|++|+. .+..+|..+++++.... ...+..++.+||+.|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~ 248 (287)
T PF00931_consen 169 RAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLP 248 (287)
T ss_dssp HHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCC
Confidence 987655 334445677899999999999999999999965 25688999988876552 3569999999999999
Q ss_pred hhHHHHHHHhcccCCC--CCHHHHHHHhccc
Q 045618 235 AEEKSLFLDIACFFNG--QDKDSVLKMIGDS 263 (349)
Q Consensus 235 ~~~~~~f~~la~fp~~--~~~~~l~~~~~~~ 263 (349)
++.|+||.+||+||.+ ++.+.++.+|.++
T Consensus 249 ~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e 279 (287)
T PF00931_consen 249 DELRRCFLYLSIFPEGVPIPRERLIRLWVAE 279 (287)
T ss_dssp TCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-
T ss_pred ccHHHHHhhCcCCCCCceECHHHHHHHHHHC
Confidence 9999999999999998 8899999999997
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.57 E-value=3.2e-13 Score=141.56 Aligned_cols=203 Identities=16% Similarity=0.220 Sum_probs=136.0
Q ss_pred CCceEEEEecCCCch--hHHHHH-cccCCCCCCcEEEEEeCcchhhcc--c-CcccEEEcC----CCChHhHHHHHHHhh
Q 045618 95 RTKVLIVLDDVNKVG--QLEYLI-GGLERFGPGSRIIVTTRDRRVLDN--F-GVGNIYKVN----GLKYREALELFCNCA 164 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~--~~~~l~-~~~~~~~~~~~IlvTTR~~~~~~~--~-~~~~~~~l~----~L~~~ea~~L~~~~a 164 (349)
+.+++|||||++... .+..++ ..+....++.++|||||...-... + ......++. +|+.+|+.++|....
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 678999999998542 222222 222223467789899998532211 1 112245555 899999999998765
Q ss_pred ccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhccCCHHHHHHHHHHhhcCCCCcHHHHHHHh-HhcCChhHHHHHHH
Q 045618 165 FKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQKSKLDWESALDNLKRISDPDIYDVLKIS-YNEIKAEEKSLFLD 243 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~~~~~~~~~l~~l~~~~~~~l~~~l~~s-~~~L~~~~~~~f~~ 243 (349)
+.. . ..+.+.+|.+.|+|+|+++..++..++..+. ........+...+...+...+.-. ++.||++.++++..
T Consensus 200 ~~~-~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~ 273 (903)
T PRK04841 200 SSP-I----EAAESSRLCDDVEGWATALQLIALSARQNNS-SLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLR 273 (903)
T ss_pred CCC-C----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCC-chhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 221 1 2345678999999999999999987754321 011122222221233455554444 78999999999999
Q ss_pred hcccCCCCCHHHHHHHhcccccHHHhHHHHhhCcceEEc-C--CCeEEecHHHHHHHHHHHhhhc
Q 045618 244 IACFFNGQDKDSVLKMIGDSSFAHYGLNVLVDKSLVTVS-R--GNQLQMHDLLQEMGREIVRQES 305 (349)
Q Consensus 244 la~fp~~~~~~~l~~~~~~~~~~~~~l~~L~~~sLl~~~-~--~~~~~mH~lv~~~a~~~~~~e~ 305 (349)
+|+++ .++.+.+..+... ......++.|.+.+|+... + ..+|+.|++++++.+.....+.
T Consensus 274 ~a~~~-~~~~~l~~~l~~~-~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~ 336 (903)
T PRK04841 274 CSVLR-SMNDALIVRVTGE-ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWEL 336 (903)
T ss_pred hcccc-cCCHHHHHHHcCC-CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcC
Confidence 99986 7887777766654 3567889999999997642 2 3479999999999999886553
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.08 E-value=5e-09 Score=103.54 Aligned_cols=199 Identities=17% Similarity=0.233 Sum_probs=129.9
Q ss_pred CceEEEEecCCCc---hh---HHHHHcccCCCCCCcEEEEEeCcchhhcccC---cccEEEcC----CCChHhHHHHHHH
Q 045618 96 TKVLIVLDDVNKV---GQ---LEYLIGGLERFGPGSRIIVTTRDRRVLDNFG---VGNIYKVN----GLKYREALELFCN 162 (349)
Q Consensus 96 ~~~LlVlDdv~~~---~~---~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~---~~~~~~l~----~L~~~ea~~L~~~ 162 (349)
++..+||||.+-. .. ++.|+.. ..++-.++||||+..-..... ....++++ .++.+|+.++|..
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~ 205 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKH---APENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLND 205 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHh---CCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHH
Confidence 5789999999733 22 3444333 356889999999985332211 11233333 3889999999987
Q ss_pred hhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhcc-CCHHHHHHHHHHhhcCCCCcHHH-HHHHhHhcCChhHHHH
Q 045618 163 CAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQ-KSKLDWESALDNLKRISDPDIYD-VLKISYNEIKAEEKSL 240 (349)
Q Consensus 163 ~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~-~~~~~~~~~l~~l~~~~~~~l~~-~l~~s~~~L~~~~~~~ 240 (349)
.. +.. -....+..|.+..+|.+-|+.+++=.+++ .+...-.. .+... ...+.. ..+--++.||++.|..
T Consensus 206 ~~-~l~----Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~---~LsG~-~~~l~dYL~eeVld~Lp~~l~~F 276 (894)
T COG2909 206 RG-SLP----LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR---GLSGA-ASHLSDYLVEEVLDRLPPELRDF 276 (894)
T ss_pred cC-CCC----CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh---hccch-HHHHHHHHHHHHHhcCCHHHHHH
Confidence 64 111 12345778999999999999999998884 23322221 11111 011111 1223478999999999
Q ss_pred HHHhcccCCCCCHHHHHHHhcccccHHHhHHHHhhCcceEEc---CCCeEEecHHHHHHHHHHHhhhcCCC
Q 045618 241 FLDIACFFNGQDKDSVLKMIGDSSFAHYGLNVLVDKSLVTVS---RGNQLQMHDLLQEMGREIVRQESIEQ 308 (349)
Q Consensus 241 f~~la~fp~~~~~~~l~~~~~~~~~~~~~l~~L~~~sLl~~~---~~~~~~mH~lv~~~a~~~~~~e~~~~ 308 (349)
++-+|+++. +.-+-..++.+. ..+...+++|.+++|.-.. ++++|+.|.+..+|.+.....+.+..
T Consensus 277 Ll~~svl~~-f~~eL~~~Ltg~-~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~ 345 (894)
T COG2909 277 LLQTSVLSR-FNDELCNALTGE-ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAAR 345 (894)
T ss_pred HHHHHhHHH-hhHHHHHHHhcC-CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCc
Confidence 999998733 333333333333 4667789999999998843 26789999999999999988875443
No 6
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.06 E-value=1.3e-10 Score=106.35 Aligned_cols=281 Identities=20% Similarity=0.182 Sum_probs=182.6
Q ss_pred HhhcccCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHHHHH
Q 045618 11 LAELNRATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPEYVR 90 (349)
Q Consensus 11 ~~~~~~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~ 90 (349)
.+.+-..++||||||+++..+-... ..| .....+++...-.+.. +.--++....+.....-++.-..+.
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~~~------~~~----~~~v~~vdl~pitD~~-~v~~~~ag~~gl~~~~g~~~~~~~~ 82 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAHAA------SEY----ADGVAFVDLAPITDPA-LVFPTLAGALGLHVQPGDSAVDTLV 82 (414)
T ss_pred hheeeeeccCccceehhhhhhHhHh------hhc----ccceeeeeccccCchh-HhHHHHHhhcccccccchHHHHHHH
Confidence 3344466779999999987443210 011 0011122222222332 3333333323434433333444688
Q ss_pred HHhCCCceEEEEecCCCch-hHHHHHcccCCCCCCcEEEEEeCcchhhcccCcccEEEcCCCChH-hHHHHHHHhhccCC
Q 045618 91 ERLRRTKVLIVLDDVNKVG-QLEYLIGGLERFGPGSRIIVTTRDRRVLDNFGVGNIYKVNGLKYR-EALELFCNCAFKEN 168 (349)
Q Consensus 91 ~~L~~~~~LlVlDdv~~~~-~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~~~~~~~l~~L~~~-ea~~L~~~~a~~~~ 168 (349)
....+++.++|+||+.+.. ....+...+...++.-.|+.|+|+.... ..+..+.+++|+.. ++.++|...+....
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhc
Confidence 8889999999999998764 3444444554446777899999987432 24557888888875 78899887663322
Q ss_pred ---CCChhHHHHHHHHHHHcCCCchHHHHHhHHhccCCHHHHHHHHHH----hhcC------CCCcHHHHHHHhHhcCCh
Q 045618 169 ---HCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQKSKLDWESALDN----LKRI------SDPDIYDVLKISYNEIKA 235 (349)
Q Consensus 169 ---~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~~~~~~~~~l~~----l~~~------~~~~l~~~l~~s~~~L~~ 235 (349)
...........+|+++..|.|++|..+++..+.....+....++. +... ........+.+||.-|+.
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 223344677889999999999999999999988655555444432 2222 235678899999999999
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHH-hcc----c-ccHHHhHHHHhhCcceEEcC---CCeEEecHHHHHHHHHHHhhhc
Q 045618 236 EEKSLFLDIACFFNGQDKDSVLKM-IGD----S-SFAHYGLNVLVDKSLVTVSR---GNQLQMHDLLQEMGREIVRQES 305 (349)
Q Consensus 236 ~~~~~f~~la~fp~~~~~~~l~~~-~~~----~-~~~~~~l~~L~~~sLl~~~~---~~~~~mH~lv~~~a~~~~~~e~ 305 (349)
-.+-.|..++.|...|+.+..... ..+ + +.....+-.|+++|++.... .-.|+.-+-+|.|+....++..
T Consensus 240 we~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 240 WERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG 318 (414)
T ss_pred HHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999888777632222 111 2 34556678999999998664 2348888888988888777654
No 7
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.84 E-value=1.5e-07 Score=86.36 Aligned_cols=184 Identities=14% Similarity=0.102 Sum_probs=113.7
Q ss_pred HHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchhhccc--CcccEEEcCCCChHhHHHHHHHhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRVLDNF--GVGNIYKVNGLKYREALELFCNCAF 165 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~a~ 165 (349)
.++..+.+.+..+|+++..+...+.... .+.+-|..||+...+...+ .....+.+++++.++..+++.+.+.
T Consensus 100 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 100 LLYPAMEDFRLDIVIGKGPSARSVRLDL------PPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred HhhHHHhhhheeeeeccCccccceeecC------CCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHH
Confidence 4555555555556666554443332211 2245566677765443322 1234688999999999999998875
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhccCCHHHHHHHHHHhhcC-CC----CcHHHHHHHhHhcCChhHHHH
Q 045618 166 KENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQKSKLDWESALDNLKRI-SD----PDIYDVLKISYNEIKAEEKSL 240 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~~~~~~~~~l~~l~~~-~~----~~l~~~l~~s~~~L~~~~~~~ 240 (349)
..... -.++.+..|++.|+|.|-.+..+...+. ... ...... .. ......+...|..++...+..
T Consensus 174 ~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~~a-~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~ 243 (305)
T TIGR00635 174 LLNVE--IEPEAALEIARRSRGTPRIANRLLRRVR-------DFA-QVRGQKIINRDIALKALEMLMIDELGLDEIDRKL 243 (305)
T ss_pred HhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHH-------HHH-HHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 43322 2245678899999999976654444321 100 000000 00 011222455678888888777
Q ss_pred HH-HhcccCCC-CCHHHHHHHhccc-ccHHHhHH-HHhhCcceEEcCCCeE
Q 045618 241 FL-DIACFFNG-QDKDSVLKMIGDS-SFAHYGLN-VLVDKSLVTVSRGNQL 287 (349)
Q Consensus 241 f~-~la~fp~~-~~~~~l~~~~~~~-~~~~~~l~-~L~~~sLl~~~~~~~~ 287 (349)
+. .++.+.++ +..+.+...++.. ...+..++ .|++++||.....|++
T Consensus 244 L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~ 294 (305)
T TIGR00635 244 LSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRI 294 (305)
T ss_pred HHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchhh
Confidence 76 55777665 8889999999888 78888889 6999999987655554
No 8
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.80 E-value=6.3e-08 Score=89.71 Aligned_cols=154 Identities=14% Similarity=0.099 Sum_probs=100.4
Q ss_pred CcEEEEEeCcchhhccc--CcccEEEcCCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhcc
Q 045618 124 GSRIIVTTRDRRVLDNF--GVGNIYKVNGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQ 201 (349)
Q Consensus 124 ~~~IlvTTR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~ 201 (349)
.+-|..||+...+...+ .....+++++++.++..+++.+.+....... .++.+..|++.|+|.|-.+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~--~~~~~~~ia~~~~G~pR~a~~~l~~~~- 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI--DEEGALEIARRSRGTPRIANRLLRRVR- 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHcCCCchHHHHHHHHHH-
Confidence 34566666655443322 1234689999999999999998875443222 245688999999999954444443221
Q ss_pred CCHHHHHHHHHHhhcCCC----CcHHHHHHHhHhcCChhHHHHHH-HhcccCCC-CCHHHHHHHhccc-ccHHHhHH-HH
Q 045618 202 KSKLDWESALDNLKRISD----PDIYDVLKISYNEIKAEEKSLFL-DIACFFNG-QDKDSVLKMIGDS-SFAHYGLN-VL 273 (349)
Q Consensus 202 ~~~~~~~~~l~~l~~~~~----~~l~~~l~~s~~~L~~~~~~~f~-~la~fp~~-~~~~~l~~~~~~~-~~~~~~l~-~L 273 (349)
.|..... ..... ......+...+..|++..+..+. .+..|+++ +..+.+...++.. ...+..++ .|
T Consensus 228 ----~~a~~~~--~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~L 301 (328)
T PRK00080 228 ----DFAQVKG--DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYL 301 (328)
T ss_pred ----HHHHHcC--CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHH
Confidence 1211100 00000 11223345567788888888876 66777766 8999999999988 78888888 99
Q ss_pred hhCcceEEcCCCe
Q 045618 274 VDKSLVTVSRGNQ 286 (349)
Q Consensus 274 ~~~sLl~~~~~~~ 286 (349)
++.+|++....|+
T Consensus 302 i~~~li~~~~~gr 314 (328)
T PRK00080 302 IQQGFIQRTPRGR 314 (328)
T ss_pred HHcCCcccCCchH
Confidence 9999998665554
No 9
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.57 E-value=4.1e-06 Score=75.32 Aligned_cols=170 Identities=12% Similarity=0.064 Sum_probs=95.6
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHH---HHHHH-
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLP---EYVRE- 91 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~---~~l~~- 91 (349)
..|+.|.||||+++..+....- ..+. . ..+ .....+..++...|+..+ |.+... .+.. ..+..
T Consensus 48 l~G~~G~GKTtl~~~l~~~l~~----~~~~-----~-~~~-~~~~~~~~~~l~~i~~~l-G~~~~~-~~~~~~~~~l~~~ 114 (269)
T TIGR03015 48 ITGEVGAGKTTLIRNLLKRLDQ----ERVV-----A-AKL-VNTRVDAEDLLRMVAADF-GLETEG-RDKAALLRELEDF 114 (269)
T ss_pred EEcCCCCCHHHHHHHHHHhcCC----CCeE-----E-eee-eCCCCCHHHHHHHHHHHc-CCCCCC-CCHHHHHHHHHHH
Confidence 5778999999999966543110 0000 0 000 111224556677777665 322211 1111 12222
Q ss_pred ----HhCCCceEEEEecCCCch--hHHHHH---cccCCCCCCcEEEEEeCcchhhccc----------CcccEEEcCCCC
Q 045618 92 ----RLRRTKVLIVLDDVNKVG--QLEYLI---GGLERFGPGSRIIVTTRDRRVLDNF----------GVGNIYKVNGLK 152 (349)
Q Consensus 92 ----~L~~~~~LlVlDdv~~~~--~~~~l~---~~~~~~~~~~~IlvTTR~~~~~~~~----------~~~~~~~l~~L~ 152 (349)
...+++.+||+|+++... .++.+. ...........|++|.... ....+ .....+++++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 236788999999998653 344432 2111112233455555432 11111 113367899999
Q ss_pred hHhHHHHHHHhhccCCC--CChhHHHHHHHHHHHcCCCchHHHHHhHHh
Q 045618 153 YREALELFCNCAFKENH--CPEDLLVHSKRILDYANGNPLAVRVLGSFL 199 (349)
Q Consensus 153 ~~ea~~L~~~~a~~~~~--~~~~~~~~~~~i~~~c~glPLAl~~~a~~l 199 (349)
.+|..+++...+..... ...-..+....|.+.++|.|..|..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999988876633221 111234778899999999999999988776
No 10
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.57 E-value=2.3e-05 Score=74.55 Aligned_cols=252 Identities=14% Similarity=0.048 Sum_probs=136.0
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCC-CCHH---HHHHH
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRT-PNLP---EYVRE 91 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~-~~~~---~~l~~ 91 (349)
..|+.|+|||++++.+++...-.. ..+ .+..+......+...+...++.++.+...+.. .+.. +.+.+
T Consensus 60 I~G~~GtGKT~l~~~v~~~l~~~~--~~~------~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 131 (394)
T PRK00411 60 IYGPPGTGKTTTVKKVFEELEEIA--VKV------VYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAE 131 (394)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhc--CCc------EEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 567789999999997765321000 000 11112222223566778888888754222211 1222 35555
Q ss_pred HhC--CCceEEEEecCCCch------hHHHHHcccCCC-CCCcEEEEEeCcchhhcccC-------cccEEEcCCCChHh
Q 045618 92 RLR--RTKVLIVLDDVNKVG------QLEYLIGGLERF-GPGSRIIVTTRDRRVLDNFG-------VGNIYKVNGLKYRE 155 (349)
Q Consensus 92 ~L~--~~~~LlVlDdv~~~~------~~~~l~~~~~~~-~~~~~IlvTTR~~~~~~~~~-------~~~~~~l~~L~~~e 155 (349)
.+. ++..+||||+++... .+..+...+... +.+..+|.++........+. ....+.+++++.++
T Consensus 132 ~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e 211 (394)
T PRK00411 132 YLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADE 211 (394)
T ss_pred HHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHH
Confidence 655 356899999998632 344443322211 11333666666554322211 12468899999999
Q ss_pred HHHHHHHhhccC---C-CCChhHHHHHHHHHHHcCCCchHHHHHhHHhc-----c---CCHHHHHHHHHHhhcCCCCcHH
Q 045618 156 ALELFCNCAFKE---N-HCPEDLLVHSKRILDYANGNPLAVRVLGSFLR-----Q---KSKLDWESALDNLKRISDPDIY 223 (349)
Q Consensus 156 a~~L~~~~a~~~---~-~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~-----~---~~~~~~~~~l~~l~~~~~~~l~ 223 (349)
..+++...+... . ......+.+++......|..+.|+.++-.... + -+...+..+++.. -.
T Consensus 212 ~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~-------~~ 284 (394)
T PRK00411 212 IFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS-------EI 284 (394)
T ss_pred HHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH-------HH
Confidence 999998776321 1 11222222222222224567777776643221 1 1345555555544 12
Q ss_pred HHHHHhHhcCChhHHHHHHHhcccC----CCCCHHHHHHH-------hccc----ccHHHhHHHHhhCcceEEc
Q 045618 224 DVLKISYNEIKAEEKSLFLDIACFF----NGQDKDSVLKM-------IGDS----SFAHYGLNVLVDKSLVTVS 282 (349)
Q Consensus 224 ~~l~~s~~~L~~~~~~~f~~la~fp----~~~~~~~l~~~-------~~~~----~~~~~~l~~L~~~sLl~~~ 282 (349)
....-.+..||.+.+..+..++-.. ..+....+... .... .....+++.|...+||...
T Consensus 285 ~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 285 VHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 3344568899998887776665332 23555555432 2221 2345679999999999954
No 11
>PF05729 NACHT: NACHT domain
Probab=98.55 E-value=3.7e-07 Score=75.42 Aligned_cols=71 Identities=20% Similarity=0.390 Sum_probs=49.8
Q ss_pred CCCceEEEEecCCCchh---------HHHHHcccCC--CCCCcEEEEEeCcchh---hcccCcccEEEcCCCChHhHHHH
Q 045618 94 RRTKVLIVLDDVNKVGQ---------LEYLIGGLER--FGPGSRIIVTTRDRRV---LDNFGVGNIYKVNGLKYREALEL 159 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~~~---------~~~l~~~~~~--~~~~~~IlvTTR~~~~---~~~~~~~~~~~l~~L~~~ea~~L 159 (349)
..++++||+|++++... +..++..+.. ..++++++||+|.... .........+++.+|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 56899999999975432 2222222221 2468999999998766 23334446899999999999999
Q ss_pred HHHhh
Q 045618 160 FCNCA 164 (349)
Q Consensus 160 ~~~~a 164 (349)
+.+..
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 97764
No 12
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.24 E-value=9.2e-06 Score=70.95 Aligned_cols=97 Identities=21% Similarity=0.232 Sum_probs=51.6
Q ss_pred CceEEEEecCCCch-----------hHHHHHcccCCCCCCcEEEEEeCcchhhcc--------cCcccEEEcCCCChHhH
Q 045618 96 TKVLIVLDDVNKVG-----------QLEYLIGGLERFGPGSRIIVTTRDRRVLDN--------FGVGNIYKVNGLKYREA 156 (349)
Q Consensus 96 ~~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~--------~~~~~~~~l~~L~~~ea 156 (349)
++++||+|++.... .+..+...... .....+++++........ .+....+.+++++.+++
T Consensus 118 ~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~ 196 (234)
T PF01637_consen 118 KKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEA 196 (234)
T ss_dssp CCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHH
T ss_pred CcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHH
Confidence 45999999997544 12222222222 233445555544433322 22334599999999999
Q ss_pred HHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 045618 157 LELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRV 194 (349)
Q Consensus 157 ~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~ 194 (349)
.+++....-.. ...+.......+|...+||+|..|..
T Consensus 197 ~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 197 REFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 99999865332 11112356678999999999988754
No 13
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.19 E-value=0.0008 Score=63.29 Aligned_cols=256 Identities=15% Similarity=0.065 Sum_probs=130.6
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhh--cccCCCC-CCHH---HHH
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLV--EQEQIRT-PNLP---EYV 89 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~--~~~~~~~-~~~~---~~l 89 (349)
..|+.|+|||++++..+....-..-....+ ..+..+.-....+...+...|+.++. +...+.. .+.. +.+
T Consensus 45 I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~----~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 120 (365)
T TIGR02928 45 IYGKTGTGKTAVTKYVMKELEEAAEDRDVR----VVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRL 120 (365)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhhccCCc----eEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHH
Confidence 467789999999986654321000000000 01111222222345667777887774 2221111 1222 245
Q ss_pred HHHhC--CCceEEEEecCCCch-----hHHHHHcc--cCC-CCCCcEEEEEeCcchhhcccC-------cccEEEcCCCC
Q 045618 90 RERLR--RTKVLIVLDDVNKVG-----QLEYLIGG--LER-FGPGSRIIVTTRDRRVLDNFG-------VGNIYKVNGLK 152 (349)
Q Consensus 90 ~~~L~--~~~~LlVlDdv~~~~-----~~~~l~~~--~~~-~~~~~~IlvTTR~~~~~~~~~-------~~~~~~l~~L~ 152 (349)
.+.+. +++++||||+++... .+..+... ... .+....+|.+|........+. ....+.++|++
T Consensus 121 ~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~ 200 (365)
T TIGR02928 121 YKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYD 200 (365)
T ss_pred HHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCC
Confidence 55553 467899999998651 12333222 111 113345555665443221111 12468899999
Q ss_pred hHhHHHHHHHhhcc---CCCCChhHHHHHHHHHHHcCCCch-HHHHHhHHh----c-c---CCHHHHHHHHHHhhcCCCC
Q 045618 153 YREALELFCNCAFK---ENHCPEDLLVHSKRILDYANGNPL-AVRVLGSFL----R-Q---KSKLDWESALDNLKRISDP 220 (349)
Q Consensus 153 ~~ea~~L~~~~a~~---~~~~~~~~~~~~~~i~~~c~glPL-Al~~~a~~l----~-~---~~~~~~~~~l~~l~~~~~~ 220 (349)
.++-.+++...+.. .....++.-+.+..++....|-|- |+.++-... . + -+.+......+.+
T Consensus 201 ~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~------ 274 (365)
T TIGR02928 201 AEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI------ 274 (365)
T ss_pred HHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH------
Confidence 99999999987631 111222222344556666678774 333222111 1 1 1233444444433
Q ss_pred cHHHHHHHhHhcCChhHHHHHHHhccc---C-CCCCHHHHHHHhc---c----c----ccHHHhHHHHhhCcceEEc
Q 045618 221 DIYDVLKISYNEIKAEEKSLFLDIACF---F-NGQDKDSVLKMIG---D----S----SFAHYGLNVLVDKSLVTVS 282 (349)
Q Consensus 221 ~l~~~l~~s~~~L~~~~~~~f~~la~f---p-~~~~~~~l~~~~~---~----~----~~~~~~l~~L~~~sLl~~~ 282 (349)
-.....-++..||.+.+.++..++.. . ..+....+...+. . . .....+++.|...|||...
T Consensus 275 -~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 275 -EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 12334456788888887666655422 1 1255555544221 1 1 2456789999999999965
No 14
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.13 E-value=6.9e-05 Score=77.61 Aligned_cols=205 Identities=16% Similarity=0.231 Sum_probs=128.3
Q ss_pred CCCceEEEEecCC--Cchh---HHHHHcccC---CCCCCcEEEEEeCcc--hhhcccCcccEEEcCCCChHhHHHHHHHh
Q 045618 94 RRTKVLIVLDDVN--KVGQ---LEYLIGGLE---RFGPGSRIIVTTRDR--RVLDNFGVGNIYKVNGLKYREALELFCNC 163 (349)
Q Consensus 94 ~~~~~LlVlDdv~--~~~~---~~~l~~~~~---~~~~~~~IlvTTR~~--~~~~~~~~~~~~~l~~L~~~ea~~L~~~~ 163 (349)
+.++.++|+||+. |... ++.+..... ...+..-.+.|.+.. .+.........+.|.||+..+.-.+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 3469999999995 3322 333333321 001122233333332 11222234468999999999999999887
Q ss_pred hccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhccC-------CHHHHHHHHHHhhcCCC-CcHHHHHHHhHhcCCh
Q 045618 164 AFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQK-------SKLDWESALDNLKRISD-PDIYDVLKISYNEIKA 235 (349)
Q Consensus 164 a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~-------~~~~~~~~l~~l~~~~~-~~l~~~l~~s~~~L~~ 235 (349)
........ .+....|+++..|.|+-+..+-..+... ....|..-...+..... +++...+..-.+.||.
T Consensus 232 l~~~~~~~---~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 232 LGCTKLLP---APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred hCCccccc---chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCH
Confidence 74422222 3567799999999999999998888663 23344433333322211 2344467788999999
Q ss_pred hHHHHHHHhcccCCCCCHHHHHHHhccc--ccHHHhHHHHhhCcceEEcC-------CCeE---EecHHHHHHHHHHH
Q 045618 236 EEKSLFLDIACFFNGQDKDSVLKMIGDS--SFAHYGLNVLVDKSLVTVSR-------GNQL---QMHDLLQEMGREIV 301 (349)
Q Consensus 236 ~~~~~f~~la~fp~~~~~~~l~~~~~~~--~~~~~~l~~L~~~sLl~~~~-------~~~~---~mH~lv~~~a~~~~ 301 (349)
..|..+...||+.+.|+.+.|..++... ..+....+.|.....+..++ .... ..|+.+|+.|-...
T Consensus 309 ~t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 309 TTREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred HHHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccC
Confidence 9999999999999889999999999865 45555555555544443221 1112 56888887775443
No 15
>PRK06893 DNA replication initiation factor; Validated
Probab=97.90 E-value=9.7e-05 Score=64.81 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=56.5
Q ss_pred eEEEEecCCCc---hhHH-HHHcccCCC-CCCcEEEE-EeCc---------chhhcccCcccEEEcCCCChHhHHHHHHH
Q 045618 98 VLIVLDDVNKV---GQLE-YLIGGLERF-GPGSRIIV-TTRD---------RRVLDNFGVGNIYKVNGLKYREALELFCN 162 (349)
Q Consensus 98 ~LlVlDdv~~~---~~~~-~l~~~~~~~-~~~~~Ilv-TTR~---------~~~~~~~~~~~~~~l~~L~~~ea~~L~~~ 162 (349)
-+|+|||++.. ..|+ .+...+... ..++.+|| |++. +++...+.....+++++++.++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 58999999853 3343 222222111 23555554 4443 23344444556899999999999999998
Q ss_pred hhccCCCCChhHHHHHHHHHHHcCCCchHHH
Q 045618 163 CAFKENHCPEDLLVHSKRILDYANGNPLAVR 193 (349)
Q Consensus 163 ~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~ 193 (349)
.+.......+ ++...-|++.+.|-.-.+.
T Consensus 173 ~a~~~~l~l~--~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 173 NAYQRGIELS--DEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHcCCCCC--HHHHHHHHHhccCCHHHHH
Confidence 8864442222 3556677777776654443
No 16
>PF13173 AAA_14: AAA domain
Probab=97.81 E-value=0.00012 Score=58.05 Aligned_cols=69 Identities=26% Similarity=0.365 Sum_probs=50.3
Q ss_pred HHHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchhhcc-----c-CcccEEEcCCCChHh
Q 045618 87 EYVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRVLDN-----F-GVGNIYKVNGLKYRE 155 (349)
Q Consensus 87 ~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~-----~-~~~~~~~l~~L~~~e 155 (349)
+.+.+....++.+++||++.....|...+..+....+..+|++|+++...... + +-...+++.||+..|
T Consensus 52 ~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 52 EYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 33444454578899999999888888887777665677899999998765432 1 223468899999876
No 17
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.76 E-value=0.0006 Score=65.26 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=61.9
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEE--EeCcch--hhccc-CcccEEEcCCCChHhHHHHHHHhhcc
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIV--TTRDRR--VLDNF-GVGNIYKVNGLKYREALELFCNCAFK 166 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~Ilv--TTR~~~--~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~ 166 (349)
.+++.+|++|+++.. .+.+.|++.+. .+..+++ ||.+.. +...+ .-...+.+++++.++...++.+.+..
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 457889999999854 34556665543 2444444 344432 11111 12357899999999999999886532
Q ss_pred CCCCC-hhHHHHHHHHHHHcCCCchHHHHHhH
Q 045618 167 ENHCP-EDLLVHSKRILDYANGNPLAVRVLGS 197 (349)
Q Consensus 167 ~~~~~-~~~~~~~~~i~~~c~glPLAl~~~a~ 197 (349)
..... .-..+....|++.|+|.|..+..+..
T Consensus 167 ~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 167 KERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred hhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11111 12245677889999999876654443
No 18
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.68 E-value=0.00054 Score=59.78 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=57.5
Q ss_pred eEEEEecCCCch---h-HHHHHcccCC-CCCCcEEEEEeCcchh---------hcccCcccEEEcCCCChHhHHHHHHHh
Q 045618 98 VLIVLDDVNKVG---Q-LEYLIGGLER-FGPGSRIIVTTRDRRV---------LDNFGVGNIYKVNGLKYREALELFCNC 163 (349)
Q Consensus 98 ~LlVlDdv~~~~---~-~~~l~~~~~~-~~~~~~IlvTTR~~~~---------~~~~~~~~~~~l~~L~~~ea~~L~~~~ 163 (349)
-+||+||++... . .+.+...+.. ...+..+|+||+.... ...+.....+++++++.++-..++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 489999997532 2 2333322211 1234578888875421 111222357899999999989988876
Q ss_pred hccCCCCChhHHHHHHHHHHHcCCCchHHHHHhH
Q 045618 164 AFKENHCPEDLLVHSKRILDYANGNPLAVRVLGS 197 (349)
Q Consensus 164 a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~ 197 (349)
+-..... -.++....|++.+.|.|..+..+..
T Consensus 172 ~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 172 AARRGLQ--LPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 5322211 1235566777788888876665543
No 19
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.66 E-value=0.00079 Score=62.24 Aligned_cols=97 Identities=15% Similarity=0.248 Sum_probs=60.7
Q ss_pred HHhCCCceEEEEecCCC--chhHHHHHcccCCCCCCcEEEE--EeCcchhh---cccCcccEEEcCCCChHhHHHHHHHh
Q 045618 91 ERLRRTKVLIVLDDVNK--VGQLEYLIGGLERFGPGSRIIV--TTRDRRVL---DNFGVGNIYKVNGLKYREALELFCNC 163 (349)
Q Consensus 91 ~~L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~Ilv--TTR~~~~~---~~~~~~~~~~l~~L~~~ea~~L~~~~ 163 (349)
....+++.+|.+|.|+. ..+-+.|+|.. -+|..|+| ||-|+... ....-..++.+++|+.+|-.+++.+.
T Consensus 99 ~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 99 NRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred HHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHH
Confidence 34458999999999984 45567777775 45666666 44444311 11123568999999999999999884
Q ss_pred hccCCCC-----ChhHHHHHHHHHHHcCCCch
Q 045618 164 AFKENHC-----PEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 164 a~~~~~~-----~~~~~~~~~~i~~~c~glPL 190 (349)
+...... ..-.++....+++.++|---
T Consensus 176 ~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 176 LLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 4222111 11123455667777777543
No 20
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.0032 Score=61.59 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=63.7
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCc-chhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRD-RRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. ..+..|+..+......+.+|++|.. ..+...+ .....+++.+++.++..+.+.+.+-.....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45678999999854 4467777666554455555555543 3333333 234589999999999999998876433322
Q ss_pred ChhHHHHHHHHHHHcCCCchHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl 192 (349)
. ..+.+..|++.++|.+--+
T Consensus 195 i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 195 A--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred C--CHHHHHHHHHHcCCCHHHH
Confidence 1 2456778899999988544
No 21
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.0044 Score=61.57 Aligned_cols=97 Identities=10% Similarity=0.084 Sum_probs=64.3
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCc-chhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRD-RRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.++.-++|||+++.. ...+.|+..+..-..++++|++|.+ ..+...+ .-...+.++.++.++..+.+.+.+.....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 456679999999854 4577777777654556665555554 4444333 22357999999999999988877633222
Q ss_pred CChhHHHHHHHHHHHcCCCchHH
Q 045618 170 CPEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPLAl 192 (349)
.. ..+....|++.++|.|...
T Consensus 202 ~~--d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 202 AH--EVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred CC--CHHHHHHHHHHcCCCHHHH
Confidence 11 2344577899999988644
No 22
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0051 Score=57.73 Aligned_cols=95 Identities=12% Similarity=0.121 Sum_probs=63.1
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+..-++|+|+++.. .....|+..+.....++.+|++|.+.. +...+ .-...+.+++++.++..+++...... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--~- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--L- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--C-
Confidence 45678999999844 446666666654455677777777664 32222 23458999999999999999876411 1
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRVL 195 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~~ 195 (349)
. ......+++.++|.|+....+
T Consensus 217 ~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 217 P---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 122257889999999755443
No 23
>PRK09087 hypothetical protein; Validated
Probab=97.44 E-value=0.0016 Score=56.86 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=56.8
Q ss_pred EEEEecCCCc----hhHHHHHcccCCCCCCcEEEEEeCcc---------hhhcccCcccEEEcCCCChHhHHHHHHHhhc
Q 045618 99 LIVLDDVNKV----GQLEYLIGGLERFGPGSRIIVTTRDR---------RVLDNFGVGNIYKVNGLKYREALELFCNCAF 165 (349)
Q Consensus 99 LlVlDdv~~~----~~~~~l~~~~~~~~~~~~IlvTTR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~a~ 165 (349)
+|++||+... ..+-.+..... ..|..||+|++.+ ++...+.....+++++++.++-..++.+.+-
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 7889999632 22222222222 3467799988743 2333334556899999999999999998874
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 045618 166 KENHCPEDLLVHSKRILDYANGNPLAVRV 194 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~i~~~c~glPLAl~~ 194 (349)
...... .++...-|++.+.|-.-++..
T Consensus 168 ~~~~~l--~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 168 DRQLYV--DPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HcCCCC--CHHHHHHHHHHhhhhHHHHHH
Confidence 432211 135566777777766655543
No 24
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.0014 Score=65.83 Aligned_cols=98 Identities=12% Similarity=0.081 Sum_probs=66.2
Q ss_pred CCceEEEEecCCCch--hHHHHHcccCCCCCCcEEEEEeCcchh-hccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKVG--QLEYLIGGLERFGPGSRIIVTTRDRRV-LDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IlvTTR~~~~-~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
++.-++|||+++... .++.|+..+.......++|++|++..- ...+ .-...+++++++.++..+.+.+.+......
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 455689999999654 477777766655667888887777543 2222 223579999999999999998876433322
Q ss_pred ChhHHHHHHHHHHHcCCCc-hHHHH
Q 045618 171 PEDLLVHSKRILDYANGNP-LAVRV 194 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glP-LAl~~ 194 (349)
. ..+....|++.++|-. -|+.+
T Consensus 198 i--d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 198 F--EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 2455678888898855 35544
No 25
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.39 E-value=0.00023 Score=56.24 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=64.8
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCC--CCCCHHHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQI--RTPNLPEYVRERL 93 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~--~~~~~~~~l~~~L 93 (349)
..|+.|+|||+++............... ...+.++......+...+...++..+...... ....+.+.+.+.+
T Consensus 9 i~G~~G~GKT~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 9 ISGPPGSGKTTLIKRLARQLNAEAEIKN-----HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp EEE-TTSSHHHHHHHHHHHHHHHHHHCC-----CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhHHhhhccC-----CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 5677899999999865543221000000 11223466666668889999999998433332 1222333666667
Q ss_pred CCCce-EEEEecCCCc-h--hHHHHHcccCCCCCCcEEEEEeCc
Q 045618 94 RRTKV-LIVLDDVNKV-G--QLEYLIGGLERFGPGSRIIVTTRD 133 (349)
Q Consensus 94 ~~~~~-LlVlDdv~~~-~--~~~~l~~~~~~~~~~~~IlvTTR~ 133 (349)
...+. +||+|+++.. . .++.+..... ..+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 66554 9999999865 2 2444433222 567777777665
No 26
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0066 Score=55.90 Aligned_cols=93 Identities=18% Similarity=0.213 Sum_probs=63.6
Q ss_pred CCceEEEEecCC--CchhHHHHHcccCCCCCCcEEEEEeCcchhh-ccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVN--KVGQLEYLIGGLERFGPGSRIIVTTRDRRVL-DNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~-~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++ +.+.++.|+..+.+..+++.+|++|.+.+.. ..+ .-...+++.++++++....+.+... ..
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~--~~- 168 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN--DI- 168 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc--CC-
Confidence 455667777776 4556888888887767788888888766432 222 2245899999999999888766531 11
Q ss_pred ChhHHHHHHHHHHHcCCCchHHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAVR 193 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~ 193 (349)
..+.+..++..++|.|.-+.
T Consensus 169 ---~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 169 ---KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ---CHHHHHHHHHHcCCCHHHHH
Confidence 12346678899999886443
No 27
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.22 E-value=0.0053 Score=51.99 Aligned_cols=88 Identities=16% Similarity=0.239 Sum_probs=60.6
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+.+-++|+|+++.. ...+.|+..+....+.+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G--I- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C--C-
Confidence 45678999999854 34566666665545567777777654 222222 23458999999999998888776 1 1
Q ss_pred ChhHHHHHHHHHHHcCCCch
Q 045618 171 PEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPL 190 (349)
.++.+..|++.++|.|.
T Consensus 170 ---~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 ---SEEAAELLLALAGGSPG 186 (188)
T ss_pred ---CHHHHHHHHHHcCCCcc
Confidence 13567899999999885
No 28
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.0018 Score=64.26 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=63.7
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.++.-++|+|+++.. .....|+..+....++.++|++|.+.. +...+ .-...+++.+++.++..+.+.+.+-....
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI 195 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI 195 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC
Confidence 356678999999854 456667666655456677777776543 22221 23458999999999999888877643332
Q ss_pred CChhHHHHHHHHHHHcCCCchHH
Q 045618 170 CPEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPLAl 192 (349)
.. .......|++.++|-+-.+
T Consensus 196 ~i--d~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 196 AA--DQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred CC--CHHHHHHHHHHcCCCHHHH
Confidence 21 2345677888888876433
No 29
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.006 Score=57.38 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=62.5
Q ss_pred CCceEEEEecCCCch--hHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKVG--QLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++... .++.++..+....+..++|++|.+.. +...+ .-...+++++++.++-.+.+...+-.....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 456699999998654 46667666655456666777665543 33222 223579999999999998888766332211
Q ss_pred ChhHHHHHHHHHHHcCCCchH
Q 045618 171 PEDLLVHSKRILDYANGNPLA 191 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLA 191 (349)
. .++.+..|++.++|-|-.
T Consensus 198 i--~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 198 T--DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred C--CHHHHHHHHHHcCCCHHH
Confidence 1 234567788899998753
No 30
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0069 Score=62.21 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=65.5
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.+++-++|||+++.. ...+.|+..+.......++|++|.+.. +...+ .-...|++++|+.++....+.+.+-....
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 467789999999854 556777776655455666666665543 33222 22358999999999999888886633221
Q ss_pred CChhHHHHHHHHHHHcCCCchHHH
Q 045618 170 CPEDLLVHSKRILDYANGNPLAVR 193 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPLAl~ 193 (349)
.-..+.+..|++.++|.|-.+.
T Consensus 197 --~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 197 --PFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHH
Confidence 1224557789999999885433
No 31
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.05 E-value=0.0079 Score=61.31 Aligned_cols=92 Identities=16% Similarity=0.299 Sum_probs=53.4
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEE--eCcch--hhccc-CcccEEEcCCCChHhHHHHHHHhhccC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVT--TRDRR--VLDNF-GVGNIYKVNGLKYREALELFCNCAFKE 167 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvT--TR~~~--~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~ 167 (349)
+++.+|+||+++.. .+.+.+++.+. .+..++++ |.++. +...+ .-...+.+++++.++...++.+.+-..
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 46779999999743 44566666543 34555553 33321 11111 123479999999999999998766310
Q ss_pred -----CCCChhHHHHHHHHHHHcCCCc
Q 045618 168 -----NHCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 168 -----~~~~~~~~~~~~~i~~~c~glP 189 (349)
.....-.++....|++.+.|..
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 1111112345567777777653
No 32
>PRK08727 hypothetical protein; Validated
Probab=97.04 E-value=0.0092 Score=52.45 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=53.5
Q ss_pred eEEEEecCCCch---hHH-HHHcccCC-CCCCcEEEEEeCcchh---------hcccCcccEEEcCCCChHhHHHHHHHh
Q 045618 98 VLIVLDDVNKVG---QLE-YLIGGLER-FGPGSRIIVTTRDRRV---------LDNFGVGNIYKVNGLKYREALELFCNC 163 (349)
Q Consensus 98 ~LlVlDdv~~~~---~~~-~l~~~~~~-~~~~~~IlvTTR~~~~---------~~~~~~~~~~~l~~L~~~ea~~L~~~~ 163 (349)
-+||+||+.... .++ .+...+.. ...+..||+||+...- ...+.....+++++++.++-.+++.+.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 489999997331 222 22222111 1246679999986432 112223458999999999999999987
Q ss_pred hccCCCCChhHHHHHHHHHHHcCCCch
Q 045618 164 AFKENHCPEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 164 a~~~~~~~~~~~~~~~~i~~~c~glPL 190 (349)
+....... .++...-|++.++|-.-
T Consensus 175 a~~~~l~l--~~e~~~~La~~~~rd~r 199 (233)
T PRK08727 175 AQRRGLAL--DEAAIDWLLTHGERELA 199 (233)
T ss_pred HHHcCCCC--CHHHHHHHHHhCCCCHH
Confidence 64332211 23455667777765443
No 33
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.0018 Score=59.79 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=60.5
Q ss_pred CceEEEEecCCC--chhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCCC
Q 045618 96 TKVLIVLDDVNK--VGQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHCP 171 (349)
Q Consensus 96 ~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~ 171 (349)
++-++|+|+++. .+....|+..+..-..++.+|+||.+.. +...+ .-...+.+.+++.+++.+.+.... .. .
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~-~-- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE-S-- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc-C--
Confidence 344557799985 4456777666655456777777777764 33333 224579999999999998887653 11 1
Q ss_pred hhHHHHHHHHHHHcCCCchHHH
Q 045618 172 EDLLVHSKRILDYANGNPLAVR 193 (349)
Q Consensus 172 ~~~~~~~~~i~~~c~glPLAl~ 193 (349)
..+.+..++..++|.|+...
T Consensus 182 --~~~~~~~~l~la~Gsp~~A~ 201 (328)
T PRK05707 182 --DERERIELLTLAGGSPLRAL 201 (328)
T ss_pred --ChHHHHHHHHHcCCCHHHHH
Confidence 12335577889999996443
No 34
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.00 E-value=0.0032 Score=62.99 Aligned_cols=97 Identities=12% Similarity=0.088 Sum_probs=63.3
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.+++-++|+|+++.. ...+.|+..+......+++|.+|.+. .+...+ .-...+++++++.++..+.+.+.+-....
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 466779999999854 45677766665545565555555554 333332 22458999999999999888876532222
Q ss_pred CChhHHHHHHHHHHHcCCCchHH
Q 045618 170 CPEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPLAl 192 (349)
.. .......|++.++|.+-..
T Consensus 197 ~~--e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 197 PF--EPRALQLLARAADGSMRDA 217 (647)
T ss_pred CC--CHHHHHHHHHHcCCCHHHH
Confidence 11 2345678889999977633
No 35
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.0033 Score=60.49 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=62.3
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCc-chhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRD-RRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.++.-++|+|+++.. ..++.|+..+........+|.+|.+ ..+...+ .-...|.+.+++.++-.+.+.+.+-....
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 456679999999854 4577777776544455555545544 3343333 22347999999999988888877633222
Q ss_pred CChhHHHHHHHHHHHcCCCchH
Q 045618 170 CPEDLLVHSKRILDYANGNPLA 191 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPLA 191 (349)
. -..+....|++.++|-+.-
T Consensus 199 ~--~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 199 Q--YDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred C--CCHHHHHHHHHHcCChHHH
Confidence 1 1245567888888888743
No 36
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.011 Score=55.99 Aligned_cols=91 Identities=11% Similarity=0.119 Sum_probs=59.8
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. .....|+..+....+++.+|++|.+.. +...+ .-...+.+++++.++..+.+.... + .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~--~- 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G--V- 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C--C-
Confidence 45568888999854 344556665554455666666666643 33333 224589999999999988887432 1 1
Q ss_pred ChhHHHHHHHHHHHcCCCchHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl 192 (349)
. .+.+..++..++|.|...
T Consensus 192 ~---~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 192 D---PETARRAARASQGHIGRA 210 (394)
T ss_pred C---HHHHHHHHHHcCCCHHHH
Confidence 1 344678899999998643
No 37
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.014 Score=54.50 Aligned_cols=96 Identities=10% Similarity=0.114 Sum_probs=61.3
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. ...+.++..+.....++.+|++|..+ .+...+ .-...+++++++.++..+++...... ..
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC-
Confidence 46679999999854 34556665554434455544444443 333333 22358999999999999999874311 11
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRV 194 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~ 194 (349)
-..+.+..+++.++|.|.....
T Consensus 218 --~~~~~~~~i~~~s~G~pr~Al~ 239 (351)
T PRK09112 218 --SDGEITEALLQRSKGSVRKALL 239 (351)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHH
Confidence 1134467889999999975443
No 38
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.93 E-value=0.018 Score=56.27 Aligned_cols=96 Identities=18% Similarity=0.249 Sum_probs=63.2
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEe-Ccchhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTT-RDRRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTT-R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.+++-++|+|+++.. ..+..|+..+....+.+.+|++| +...+...+ .....+++.+++.++..+.+.+.+-....
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 356778999999864 45777776665545566655544 444444333 22357999999999999999888743332
Q ss_pred CChhHHHHHHHHHHHcCCCchH
Q 045618 170 CPEDLLVHSKRILDYANGNPLA 191 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPLA 191 (349)
.. ..+....|++.++|-+--
T Consensus 206 ~i--e~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 206 KT--DIEALRIIAYKSEGSARD 225 (507)
T ss_pred CC--CHHHHHHHHHHcCCCHHH
Confidence 21 234566788888887643
No 39
>PF14516 AAA_35: AAA-like domain
Probab=96.92 E-value=0.28 Score=45.47 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=43.4
Q ss_pred cccEEEcCCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhccC
Q 045618 142 VGNIYKVNGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQK 202 (349)
Q Consensus 142 ~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~ 202 (349)
....+.|++++.+|..+|+.++-.. . ......+|...+||+|.-+..++..+...
T Consensus 192 Ig~~i~L~~Ft~~ev~~L~~~~~~~--~----~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 192 IGQPIELPDFTPEEVQELAQRYGLE--F----SQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cccceeCCCCCHHHHHHHHHhhhcc--C----CHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3457899999999999998876422 1 12237899999999999999999999763
No 40
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.92 E-value=0.0028 Score=63.42 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=61.1
Q ss_pred CCceEEEEecCCCch--hHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKVG--QLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++... ....|+..+......+++|++|.+.. +...+ .-...+++.+++.++-...+.+.+-.....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 466789999998654 35556555544345666776665443 22222 223467888999999998888776433322
Q ss_pred ChhHHHHHHHHHHHcCCCchHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl 192 (349)
. .......|++.++|-+.-+
T Consensus 198 i--d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 198 Y--EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred c--CHHHHHHHHHHhCCCHHHH
Confidence 1 2355678889998887443
No 41
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.91 E-value=0.035 Score=51.45 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=57.9
Q ss_pred CceEEEEecCCCch--hHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCCC
Q 045618 96 TKVLIVLDDVNKVG--QLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHCP 171 (349)
Q Consensus 96 ~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~ 171 (349)
.+-+||+||++... ....+...+......+++|+||.+.. +...+ .....+.+.+++.++....+...+......
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~- 203 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD- 203 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 44589999997542 23334433333345677777775432 22222 223478889999999988888876333322
Q ss_pred hhHHHHHHHHHHHcCCCchHH
Q 045618 172 EDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 172 ~~~~~~~~~i~~~c~glPLAl 192 (349)
-..+....+++.++|.+-.+
T Consensus 204 -~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 204 -YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred -CCHHHHHHHHHHcCCCHHHH
Confidence 12456778888888765443
No 42
>PRK04195 replication factor C large subunit; Provisional
Probab=96.91 E-value=0.083 Score=51.71 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=57.9
Q ss_pred CCceEEEEecCCCch------hHHHHHcccCCCCCCcEEEEEeCcch-hhc-cc-CcccEEEcCCCChHhHHHHHHHhhc
Q 045618 95 RTKVLIVLDDVNKVG------QLEYLIGGLERFGPGSRIIVTTRDRR-VLD-NF-GVGNIYKVNGLKYREALELFCNCAF 165 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~-~~-~~~~~~~l~~L~~~ea~~L~~~~a~ 165 (349)
.++-+||+|+++... .+..+...+. ..++.||+|+.+.. ... .+ .....+.+++++..+....+...+.
T Consensus 97 ~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 97 ARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICR 174 (482)
T ss_pred CCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHH
Confidence 367899999997542 2455544433 23344566664432 111 12 2345789999999999888887764
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCchHHH
Q 045618 166 KENHCPEDLLVHSKRILDYANGNPLAVR 193 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~i~~~c~glPLAl~ 193 (349)
...... ..+....|++.++|-.-.+.
T Consensus 175 ~egi~i--~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 175 KEGIEC--DDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred HcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 433222 14567788888888655443
No 43
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.90 E-value=0.016 Score=50.63 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=56.6
Q ss_pred ceEEEEecCCCch--hHHHHHcccCCC-CCCc-EEEEEeCcchhhc--------ccCcccEEEcCCCChHhHHHHHHHhh
Q 045618 97 KVLIVLDDVNKVG--QLEYLIGGLERF-GPGS-RIIVTTRDRRVLD--------NFGVGNIYKVNGLKYREALELFCNCA 164 (349)
Q Consensus 97 ~~LlVlDdv~~~~--~~~~l~~~~~~~-~~~~-~IlvTTR~~~~~~--------~~~~~~~~~l~~L~~~ea~~L~~~~a 164 (349)
.-+||+||++... ....+...+... ..+. .+|+|++...... .+.....+++++++.++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 4478999997432 222232222110 1233 4666666543221 11223578999999988777776654
Q ss_pred ccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHh
Q 045618 165 FKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFL 199 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l 199 (349)
....... .++....|++.+.|.+..+..+-..+
T Consensus 171 ~~~~v~l--~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGLQL--ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCCCC--CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2222111 23566778888888887776665544
No 44
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.87 E-value=0.019 Score=53.98 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=54.8
Q ss_pred CCceEEEEecCCCc----------------hhHHHHHcccCC--CCCCcEEEEEeCcchhhcc-c----CcccEEEcCCC
Q 045618 95 RTKVLIVLDDVNKV----------------GQLEYLIGGLER--FGPGSRIIVTTRDRRVLDN-F----GVGNIYKVNGL 151 (349)
Q Consensus 95 ~~~~LlVlDdv~~~----------------~~~~~l~~~~~~--~~~~~~IlvTTR~~~~~~~-~----~~~~~~~l~~L 151 (349)
....+|+||+++.. ..+..++..+.. ...+..||.||...+.... + .....+.++..
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 45689999998642 112333322221 1346778888876543221 1 12457899999
Q ss_pred ChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCc
Q 045618 152 KYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 152 ~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glP 189 (349)
+.++..++|..++.+...... .....+++.+.|..
T Consensus 294 ~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 294 DFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 999999999988744332211 11346777777764
No 45
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.82 E-value=0.06 Score=55.81 Aligned_cols=96 Identities=10% Similarity=0.053 Sum_probs=61.2
Q ss_pred hCCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhccc-CcccEEEcCCCChHhHHHHHHHhhccCC
Q 045618 93 LRRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNF-GVGNIYKVNGLKYREALELFCNCAFKEN 168 (349)
Q Consensus 93 L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~ 168 (349)
..++.-++|||+++.. ...+.|+..+.+-...+.+|++|.+. .+...+ .-...|++..++.++-.+.+.+..-...
T Consensus 117 ~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG 196 (824)
T PRK07764 117 AESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG 196 (824)
T ss_pred hcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 3456668899999854 44666666665555666666555443 344333 2345799999999998888877652222
Q ss_pred CCChhHHHHHHHHHHHcCCCch
Q 045618 169 HCPEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 169 ~~~~~~~~~~~~i~~~c~glPL 190 (349)
... .......|++.++|-+.
T Consensus 197 v~i--d~eal~lLa~~sgGdlR 216 (824)
T PRK07764 197 VPV--EPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCC--CHHHHHHHHHHcCCCHH
Confidence 211 23445678888888774
No 46
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.81 E-value=0.0085 Score=52.75 Aligned_cols=92 Identities=15% Similarity=0.143 Sum_probs=53.4
Q ss_pred eEEEEecCCCc---hhHHHH----HcccCCCCCCcEEEEEeCcchh---------hcccCcccEEEcCCCChHhHHHHHH
Q 045618 98 VLIVLDDVNKV---GQLEYL----IGGLERFGPGSRIIVTTRDRRV---------LDNFGVGNIYKVNGLKYREALELFC 161 (349)
Q Consensus 98 ~LlVlDdv~~~---~~~~~l----~~~~~~~~~~~~IlvTTR~~~~---------~~~~~~~~~~~l~~L~~~ea~~L~~ 161 (349)
-+|++||+... ..|+.. ...... ..+.++|+||+.+.- ...+....++++++++.++-.+++.
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 47999999643 233222 111111 123479999986632 2223345689999999999999988
Q ss_pred HhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 045618 162 NCAFKENHCPEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 162 ~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl 192 (349)
+.+...... -.++...-|++.+.|-.-++
T Consensus 178 ~~a~~~~~~--l~~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 178 LRARLRGFE--LPEDVGRFLLKRLDREMRTL 206 (235)
T ss_pred HHHHHcCCC--CCHHHHHHHHHhhcCCHHHH
Confidence 766333211 12355666677666554433
No 47
>PRK06620 hypothetical protein; Validated
Probab=96.81 E-value=0.013 Score=50.83 Aligned_cols=87 Identities=8% Similarity=-0.043 Sum_probs=49.1
Q ss_pred eEEEEecCCCchh--HHHHHcccCCCCCCcEEEEEeCcchhh-------cccCcccEEEcCCCChHhHHHHHHHhhccCC
Q 045618 98 VLIVLDDVNKVGQ--LEYLIGGLERFGPGSRIIVTTRDRRVL-------DNFGVGNIYKVNGLKYREALELFCNCAFKEN 168 (349)
Q Consensus 98 ~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IlvTTR~~~~~-------~~~~~~~~~~l~~L~~~ea~~L~~~~a~~~~ 168 (349)
-+|++||++..++ +-.+...+. ..|..||+|++.+.-. ..+...-++++++++.++-..++.+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 4788999985432 222222222 3466899998865431 1122344799999999988888877763222
Q ss_pred CCChhHHHHHHHHHHHcCCC
Q 045618 169 HCPEDLLVHSKRILDYANGN 188 (349)
Q Consensus 169 ~~~~~~~~~~~~i~~~c~gl 188 (349)
... .+++..-|++.+.|-
T Consensus 165 l~l--~~ev~~~L~~~~~~d 182 (214)
T PRK06620 165 VTI--SRQIIDFLLVNLPRE 182 (214)
T ss_pred CCC--CHHHHHHHHHHccCC
Confidence 111 134455555555443
No 48
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.022 Score=56.97 Aligned_cols=96 Identities=14% Similarity=0.110 Sum_probs=62.0
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCc-chhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRD-RRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
++.-++|||+++.. ...+.|+..+..-...+++|++|.+ ..+...+ .-...+++++++.++-.+.+.+.+......
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 45568999999854 4567777666554556666655544 3333222 234579999999999988888776433322
Q ss_pred ChhHHHHHHHHHHHcCCCchHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl 192 (349)
. ..+....|++.++|-+-.+
T Consensus 203 i--e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 203 A--EPQALRLLARAARGSMRDA 222 (618)
T ss_pred C--CHHHHHHHHHHcCCCHHHH
Confidence 2 2345677888888866443
No 49
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.0048 Score=59.86 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=61.9
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCc-chhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRD-RRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
++.-++|+|+++.. ...+.|+..+....+.+++|++|.+ ..+...+ .-...+++.+++.++-.+.+.+.+......
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 45668999999854 3466676666554566666666644 3343333 234579999999999998888877443322
Q ss_pred ChhHHHHHHHHHHHcCCCch
Q 045618 171 PEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPL 190 (349)
- .++.+..|++.++|-+-
T Consensus 195 i--~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 195 H--DEESLKLIAENSSGSMR 212 (491)
T ss_pred C--CHHHHHHHHHHcCCCHH
Confidence 1 23456678888888765
No 50
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.77 E-value=0.02 Score=55.32 Aligned_cols=109 Identities=13% Similarity=0.164 Sum_probs=64.3
Q ss_pred HHHHHhCCCceEEEEecCCCch---h-HHHHHcccCC-CCCCcEEEEEeCcch-hh--------cccCcccEEEcCCCCh
Q 045618 88 YVRERLRRTKVLIVLDDVNKVG---Q-LEYLIGGLER-FGPGSRIIVTTRDRR-VL--------DNFGVGNIYKVNGLKY 153 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~~~~IlvTTR~~~-~~--------~~~~~~~~~~l~~L~~ 153 (349)
.+++.+.. .-+||+||+.... . .+.|...+.. ...+..||+||.... .. ..+...-.+.+++++.
T Consensus 199 ~~~~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~ 277 (450)
T PRK14087 199 QFKNEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDN 277 (450)
T ss_pred HHHHHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCH
Confidence 34444443 3478899996431 2 2233222211 123456888876542 11 1223445788999999
Q ss_pred HhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhH
Q 045618 154 REALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGS 197 (349)
Q Consensus 154 ~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~ 197 (349)
++-..++.+.+-.......-.++...-|++.+.|.|-.+.-+..
T Consensus 278 e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 278 KTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 99999999887432211112256678888999998877665543
No 51
>PLN03025 replication factor C subunit; Provisional
Probab=96.76 E-value=0.026 Score=52.10 Aligned_cols=93 Identities=14% Similarity=0.181 Sum_probs=56.9
Q ss_pred CCceEEEEecCCCch--hHHHHHcccCCCCCCcEEEEEeCcc-hhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKVG--QLEYLIGGLERFGPGSRIIVTTRDR-RVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
++.-++|||+++... ....+...+......+++++++... .+...+ .-...+++++++.++-...+...+-.....
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 456799999998643 2334443333334566677766443 222222 123478999999999998888877433322
Q ss_pred ChhHHHHHHHHHHHcCCCc
Q 045618 171 PEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glP 189 (349)
.. ++....|++.++|-.
T Consensus 178 i~--~~~l~~i~~~~~gDl 194 (319)
T PLN03025 178 YV--PEGLEAIIFTADGDM 194 (319)
T ss_pred CC--HHHHHHHHHHcCCCH
Confidence 21 345678888888755
No 52
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.73 E-value=0.13 Score=47.11 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=58.3
Q ss_pred CceEEEEecCCCch--hHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCCC
Q 045618 96 TKVLIVLDDVNKVG--QLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHCP 171 (349)
Q Consensus 96 ~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~ 171 (349)
.+-++++|+++... ....+...+....+.+.+|+++.... +...+ .....+++++++.++....+...+......-
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 35689999997542 34445444444445667777764432 22211 1234689999999999888887764333211
Q ss_pred hhHHHHHHHHHHHcCCCchH
Q 045618 172 EDLLVHSKRILDYANGNPLA 191 (349)
Q Consensus 172 ~~~~~~~~~i~~~c~glPLA 191 (349)
.++.+..+++.++|-+--
T Consensus 182 --~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 182 --TDDALEAIYYVSEGDMRK 199 (319)
T ss_pred --CHHHHHHHHHHcCCCHHH
Confidence 245677888889887654
No 53
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.73 E-value=0.01 Score=47.05 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=26.5
Q ss_pred HhCCCceEEEEecCCCc--h---hHHHHHcccCCC---CCCcEEEEEeCcch
Q 045618 92 RLRRTKVLIVLDDVNKV--G---QLEYLIGGLERF---GPGSRIIVTTRDRR 135 (349)
Q Consensus 92 ~L~~~~~LlVlDdv~~~--~---~~~~l~~~~~~~---~~~~~IlvTTR~~~ 135 (349)
....+..++|+||++.. . .+..+....... ..+..||+||....
T Consensus 80 ~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 80 AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 34456789999999853 2 233333332221 35778888887653
No 54
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.029 Score=55.33 Aligned_cols=100 Identities=16% Similarity=0.102 Sum_probs=62.0
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.+++-++|+|+++.. ...+.|+..+......+.+|++|.+. .+...+ .-...+++.+++.++-...+.+.+-....
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi 196 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI 196 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 356779999999854 44667776665544566555555443 333222 23458999999999988877775533221
Q ss_pred CChhHHHHHHHHHHHcCCCch-HHHHH
Q 045618 170 CPEDLLVHSKRILDYANGNPL-AVRVL 195 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPL-Al~~~ 195 (349)
. -.+.....|++.++|-+- |+..+
T Consensus 197 ~--~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 197 N--SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 123456678888888653 44443
No 55
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.0041 Score=60.93 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=59.2
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
++.-++|+|+++.. ...+.++..+....+.+++|++|.++ .+...+ .-...+++++++.++-...+...+-.....
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 56678999999854 45666666665545567666665443 333222 223468899999998777666655332222
Q ss_pred ChhHHHHHHHHHHHcCCCchHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl 192 (349)
. .......|++.++|-+..+
T Consensus 198 ~--~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 198 F--ENAALDLLARAANGSVRDA 217 (509)
T ss_pred C--CHHHHHHHHHHcCCcHHHH
Confidence 1 1344567888888877543
No 56
>PRK05642 DNA replication initiation factor; Validated
Probab=96.64 E-value=0.037 Score=48.62 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=52.0
Q ss_pred EEEEecCCCc---hhHHH-HHcccCC-CCCCcEEEEEeCcchh-hc--------ccCcccEEEcCCCChHhHHHHHHHhh
Q 045618 99 LIVLDDVNKV---GQLEY-LIGGLER-FGPGSRIIVTTRDRRV-LD--------NFGVGNIYKVNGLKYREALELFCNCA 164 (349)
Q Consensus 99 LlVlDdv~~~---~~~~~-l~~~~~~-~~~~~~IlvTTR~~~~-~~--------~~~~~~~~~l~~L~~~ea~~L~~~~a 164 (349)
+||+||+... ..|+. +...+.. ...|..+|+||+...- .. .+.....+.+++++.++-..++.+++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6789999632 23332 3222211 1346778888876432 11 11233578899999999999998665
Q ss_pred ccCCCCChhHHHHHHHHHHHcCCCchHH
Q 045618 165 FKENHCPEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~c~glPLAl 192 (349)
.......+ ++...-|++.+.|-.-.+
T Consensus 180 ~~~~~~l~--~ev~~~L~~~~~~d~r~l 205 (234)
T PRK05642 180 SRRGLHLT--DEVGHFILTRGTRSMSAL 205 (234)
T ss_pred HHcCCCCC--HHHHHHHHHhcCCCHHHH
Confidence 33321111 355556666666554333
No 57
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.58 E-value=0.013 Score=50.55 Aligned_cols=67 Identities=18% Similarity=0.062 Sum_probs=41.3
Q ss_pred EEEEEeCcchhhcccC--cccEEEcCCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 045618 126 RIIVTTRDRRVLDNFG--VGNIYKVNGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRV 194 (349)
Q Consensus 126 ~IlvTTR~~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~ 194 (349)
-|=.|||.-.+...+. ..-..++...+.+|-.++..+.+..-.. +-.++.+.+|+++|.|-|--..-
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiAnr 220 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIANR 220 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHHHH
Confidence 3556777765554443 2335689999999999999887633332 22357789999999999954433
No 58
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.50 E-value=0.049 Score=50.88 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=63.4
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. .....++..+....+.+.+|++|.+.. +...+ .....+++++++.++..+.+...+-.....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45568999999754 445666666544445667667765544 22222 223478899999999988888766332221
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRVL 195 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~~ 195 (349)
. .++.+..+++.++|-|..+...
T Consensus 196 i--~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 196 I--EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred C--CHHHHHHHHHHcCCChHHHHHH
Confidence 1 1356778899999988655443
No 59
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.46 E-value=0.029 Score=48.80 Aligned_cols=98 Identities=14% Similarity=0.156 Sum_probs=53.1
Q ss_pred HHHHHhCCCceEEEEecCCCch---hHHH-H---HcccCCCCCCcEEEEEeCcchh-hc--------ccCcccEEEcCCC
Q 045618 88 YVRERLRRTKVLIVLDDVNKVG---QLEY-L---IGGLERFGPGSRIIVTTRDRRV-LD--------NFGVGNIYKVNGL 151 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~~---~~~~-l---~~~~~~~~~~~~IlvTTR~~~~-~~--------~~~~~~~~~l~~L 151 (349)
.+++.+.+ -=+|++||++... .|+. + ...+. ..|.+||+|++.... .. .+...-.+++.++
T Consensus 90 ~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~p 166 (219)
T PF00308_consen 90 EFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPP 166 (219)
T ss_dssp HHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE---
T ss_pred hhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCC
Confidence 46666664 4468899997532 2221 1 12211 346789999965532 21 1224458999999
Q ss_pred ChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCch
Q 045618 152 KYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 152 ~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPL 190 (349)
+.++-..++.+.+....... .++++.-|++.+.+..-
T Consensus 167 d~~~r~~il~~~a~~~~~~l--~~~v~~~l~~~~~~~~r 203 (219)
T PF00308_consen 167 DDEDRRRILQKKAKERGIEL--PEEVIEYLARRFRRDVR 203 (219)
T ss_dssp -HHHHHHHHHHHHHHTT--S---HHHHHHHHHHTTSSHH
T ss_pred CHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHhhcCCHH
Confidence 99999999998885444222 23445556665554443
No 60
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.035 Score=54.79 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=60.3
Q ss_pred CCCceEEEEecCCCch--hHHHHHcccCCCCCCcEEEEEeCcc-hhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNKVG--QLEYLIGGLERFGPGSRIIVTTRDR-RVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.+++-++|+|+++... ..+.|+..+......+.+|.+|.++ .+...+ .-...+++++++.++-.+.+.+.+.....
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi 196 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI 196 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 3567799999998654 3666666665544566666555443 333222 12347899999999988888776533222
Q ss_pred CChhHHHHHHHHHHHcCCCch
Q 045618 170 CPEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPL 190 (349)
.. ....+..|++.++|.+-
T Consensus 197 ~~--~~~al~~la~~s~Gslr 215 (527)
T PRK14969 197 PF--DATALQLLARAAAGSMR 215 (527)
T ss_pred CC--CHHHHHHHHHHcCCCHH
Confidence 11 23456788889999775
No 61
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.39 E-value=0.057 Score=53.59 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=60.0
Q ss_pred CceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCc-chhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCCC
Q 045618 96 TKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRD-RRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHCP 171 (349)
Q Consensus 96 ~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~ 171 (349)
++-++|+|+++.. ..+..|+..+......+.+|++|.. ..+...+ .-...+++.+++.++....+...+.......
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I 198 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI 198 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3446999999853 4456666655443445555555543 3333222 2245799999999999888887663322111
Q ss_pred hhHHHHHHHHHHHcCCCch-HHHHHh
Q 045618 172 EDLLVHSKRILDYANGNPL-AVRVLG 196 (349)
Q Consensus 172 ~~~~~~~~~i~~~c~glPL-Al~~~a 196 (349)
.++.+..+++.++|-+- |+..+-
T Consensus 199 --s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 199 --EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred --CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 13456788899998654 444333
No 62
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.35 E-value=0.048 Score=53.01 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=62.7
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. .....|+..+....+...+|++|.++ .+...+ .....+++.+++.++-...+.+.+......
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 56679999999854 34566666655434455555455443 332222 233589999999999888888876332221
Q ss_pred ChhHHHHHHHHHHHcC-CCchHHHHHhHH
Q 045618 171 PEDLLVHSKRILDYAN-GNPLAVRVLGSF 198 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~-glPLAl~~~a~~ 198 (349)
- .++....|++.++ +++.++..+-..
T Consensus 196 i--~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 196 I--DREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred C--CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1 1345667887775 456676666543
No 63
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.34 E-value=0.14 Score=48.73 Aligned_cols=167 Identities=22% Similarity=0.185 Sum_probs=98.5
Q ss_pred CceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchhhcc-----c-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 96 TKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRVLDN-----F-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 96 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~-----~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
++..++||.|.....|...+..+.+.++. +|++|+.+...... + +-...+++-||+..|-..+-.... .
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----~ 168 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----E 168 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----c
Confidence 78899999999999999998888776766 88988887754322 2 234579999999998766532000 0
Q ss_pred CChhHHHHHHHHHHHcCCCchHHHHHhHHhccCCHHHHHHHHHHhhcCCCCcHHHHHHHhHhcCChhHHHHHHHhcccCC
Q 045618 170 CPEDLLVHSKRILDYANGNPLAVRVLGSFLRQKSKLDWESALDNLKRISDPDIYDVLKISYNEIKAEEKSLFLDIACFFN 249 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~~~~~~~~~l~~l~~~~~~~l~~~l~~s~~~L~~~~~~~f~~la~fp~ 249 (349)
...... .-+-.-..||.|.++..-...-. .......++.+ .+....-..=+...++.+.+++-..+
T Consensus 169 -~~~~~~-~f~~Yl~~GGfP~~v~~~~~~~~--~~~~~~~~~~~----------Di~~~~~~~~~~~~k~i~~~l~~~~g 234 (398)
T COG1373 169 -PSKLEL-LFEKYLETGGFPESVKADLSEKK--LKEYLDTILKR----------DIIERGKIENADLMKRILRFLASNIG 234 (398)
T ss_pred -hhHHHH-HHHHHHHhCCCcHHHhCcchhhH--HHHHHHHHHHH----------HHHHHcCcccHHHHHHHHHHHHhhcC
Confidence 001111 22223457999977743222111 00111111110 01111100001344666666655544
Q ss_pred C-CCHHHHHHHh-ccc-ccHHHhHHHHhhCcceEE
Q 045618 250 G-QDKDSVLKMI-GDS-SFAHYGLNVLVDKSLVTV 281 (349)
Q Consensus 250 ~-~~~~~l~~~~-~~~-~~~~~~l~~L~~~sLl~~ 281 (349)
. +....+...+ .-+ .....+++.|.+.-++..
T Consensus 235 ~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 235 SPISYSSLARELKGISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred CccCHHHHHHHHhccchHHHHHHHHHHHHhhheEE
Confidence 4 9999999988 454 677788888888888773
No 64
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.061 Score=51.23 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=61.2
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEe-Ccchhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTT-RDRRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTT-R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+.+-++|+|+++.. ..++.++..+.+..+.+.+|++| +...+...+ .....+++++++.++..+.+...+-.....
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~ 205 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS 205 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999854 35667766665545566666555 333333332 123478899999999888887765222211
Q ss_pred ChhHHHHHHHHHHHcCCCchHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl 192 (349)
-.++.+..|++.++|.+--+
T Consensus 206 --i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 206 --VDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred --CCHHHHHHHHHHcCCCHHHH
Confidence 12456778999999977533
No 65
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.089 Score=52.77 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=59.1
Q ss_pred CCCceEEEEecCCCch--hHHHHHcccCCCCCCcEEEEEe-Ccchhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNKVG--QLEYLIGGLERFGPGSRIIVTT-RDRRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IlvTT-R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.+.+-++|+|+++... ..+.|+..+..-.+.+.+|++| +...+...+ .....+++.+++.++....+.+.+-....
T Consensus 125 ~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi 204 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI 204 (620)
T ss_pred cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 3456678999998653 4666666665444555555444 433343332 23568999999999988877765532221
Q ss_pred CChhHHHHHHHHHHHcCCCch
Q 045618 170 CPEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPL 190 (349)
.. ..+.+..|++.++|-.-
T Consensus 205 ~I--~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 205 QI--DADALQLIARKAQGSMR 223 (620)
T ss_pred CC--CHHHHHHHHHHhCCCHH
Confidence 11 23557788899998554
No 66
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.29 E-value=0.072 Score=50.90 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=55.7
Q ss_pred HHHHhCCCceEEEEecCCCch---h-HHHHHcccCC-CCCCcEEEEEeCcch-hh--------cccCcccEEEcCCCChH
Q 045618 89 VRERLRRTKVLIVLDDVNKVG---Q-LEYLIGGLER-FGPGSRIIVTTRDRR-VL--------DNFGVGNIYKVNGLKYR 154 (349)
Q Consensus 89 l~~~L~~~~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~~~~IlvTTR~~~-~~--------~~~~~~~~~~l~~L~~~ 154 (349)
+.+.+.+ .-+|+|||++... . .+.+...+.. ...+..+|+||.... .. ..+.....+.+++.+.+
T Consensus 193 ~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~ 271 (405)
T TIGR00362 193 FKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLE 271 (405)
T ss_pred HHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHH
Confidence 3444443 3488999997421 1 1222222211 023556788776432 11 11223346899999999
Q ss_pred hHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchH
Q 045618 155 EALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLA 191 (349)
Q Consensus 155 ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLA 191 (349)
+-..++.+.+....... .++....|++.+.|.+-.
T Consensus 272 ~r~~il~~~~~~~~~~l--~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 272 TRLAILQKKAEEEGLEL--PDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHH
Confidence 99999998874433222 135566777777765543
No 67
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.25 E-value=0.0018 Score=57.29 Aligned_cols=78 Identities=12% Similarity=0.058 Sum_probs=42.0
Q ss_pred cCCCCCchhhHHHHHHhhh--------hcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcc-cCCCCCC-H
Q 045618 16 RATSCGIVKIRRCLMVFRL--------CSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQ-EQIRTPN-L 85 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~--------~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~-~~~~~~~-~ 85 (349)
..+++|.|||||++..++. +.|+++.++ +.....++++++...+.-. .+..... .
T Consensus 21 I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e---------------r~~ev~el~~~I~~~~v~~~~~~~~~~~~ 85 (249)
T cd01128 21 IVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE---------------RPEEVTDMQRSVKGEVIASTFDEPPERHV 85 (249)
T ss_pred EECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC---------------CCccHHHHHHHhccEEEEecCCCCHHHHH
Confidence 5677999999999865532 334333332 1136777777773333111 1111000 0
Q ss_pred H------HHHHH-HhCCCceEEEEecCCCc
Q 045618 86 P------EYVRE-RLRRTKVLIVLDDVNKV 108 (349)
Q Consensus 86 ~------~~l~~-~L~~~~~LlVlDdv~~~ 108 (349)
. +.... .-.+++.++++|++...
T Consensus 86 ~~~~~~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 86 QVAEMVLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECHHHh
Confidence 0 01111 23479999999999643
No 68
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.23 E-value=0.28 Score=49.19 Aligned_cols=98 Identities=16% Similarity=0.092 Sum_probs=62.7
Q ss_pred CCceEEEEecCCCch--hHHHHHcccCCCCCCcEEEEEe-Ccchhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKVG--QLEYLIGGLERFGPGSRIIVTT-RDRRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IlvTT-R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++... ..+.|+..+..-...+++|++| ....+...+ .-...+++.+++.++....+.+.+-.....
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 455679999998553 4666666665445566666555 333333333 234579999999999998888876333222
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRV 194 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~ 194 (349)
. ..+.+..|++.++|-+.-+..
T Consensus 211 i--~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 211 V--EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHH
Confidence 1 135567888889988765443
No 69
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.20 E-value=0.077 Score=53.43 Aligned_cols=110 Identities=17% Similarity=0.081 Sum_probs=64.2
Q ss_pred HHHHHHhCCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEE--EeCcchh-hccc-CcccEEEcCCCChHhHHHHH
Q 045618 87 EYVRERLRRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIV--TTRDRRV-LDNF-GVGNIYKVNGLKYREALELF 160 (349)
Q Consensus 87 ~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~Ilv--TTR~~~~-~~~~-~~~~~~~l~~L~~~ea~~L~ 160 (349)
..+...+++++++++-|+.|.. ..|+.+...+....+...+++ ||++... ...+ .-...+.+++++.+|.+.++
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il 362 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHH
Confidence 3788888888888887766643 346665544444444445555 5665432 1111 12236788999999999999
Q ss_pred HHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHH
Q 045618 161 CNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSF 198 (349)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~ 198 (349)
.+.+....... .++....|.+.+..-+-|+..++..
T Consensus 363 ~~~a~~~~v~l--s~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 363 LNAAEKINVHL--AAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHcCCCC--CHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 98774322111 1334445555554446666655433
No 70
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.13 Score=50.02 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=60.0
Q ss_pred CceEEEEecCC--CchhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCCC
Q 045618 96 TKVLIVLDDVN--KVGQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHCP 171 (349)
Q Consensus 96 ~~~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~ 171 (349)
+.=..|+|.|+ ....+..|+..+..--...+.|..|.+++ +.... .-.+.|.++.++.++-...+...+.......
T Consensus 119 ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~ 198 (515)
T COG2812 119 RYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI 198 (515)
T ss_pred cceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCcc
Confidence 44578999998 45678899888866566777777777664 33322 3345799999999988888887774433222
Q ss_pred hhHHHHHHHHHHHcCCCc
Q 045618 172 EDLLVHSKRILDYANGNP 189 (349)
Q Consensus 172 ~~~~~~~~~i~~~c~glP 189 (349)
.++....|++.-+|..
T Consensus 199 --e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 199 --EEDALSLIARAAEGSL 214 (515)
T ss_pred --CHHHHHHHHHHcCCCh
Confidence 2333445555555533
No 71
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.2 Score=50.21 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=62.9
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. ...+.|+..+......+.+|++|.+. .+...+ .....+.+.+++..+....+...+......
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45678999999854 44666666655444566666666443 333322 223478899999999888888776433322
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRVL 195 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~~ 195 (349)
. ..+.+..|++.++|.+..+...
T Consensus 199 i--~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 199 L--EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 2355778899999988654433
No 72
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.087 Score=52.58 Aligned_cols=103 Identities=12% Similarity=0.098 Sum_probs=65.0
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCc-chhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRD-RRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.+++-++|+|+++.. .....|+..+........+|++|.+ ..+...+ .-...+++++++.++..+.+...+.....
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 456679999999854 4466666665443445556665554 3333232 22347899999999999888876643322
Q ss_pred CChhHHHHHHHHHHHcCCCc-hHHHHHhHH
Q 045618 170 CPEDLLVHSKRILDYANGNP-LAVRVLGSF 198 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glP-LAl~~~a~~ 198 (349)
.. ..+.+..|++.++|-+ .|+..+...
T Consensus 197 ~i--d~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 197 DY--DPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred CC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 2355678888888854 566666543
No 73
>PRK04132 replication factor C small subunit; Provisional
Probab=96.11 E-value=0.17 Score=52.34 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=62.0
Q ss_pred CceEEEEecCCCch--hHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCCC
Q 045618 96 TKVLIVLDDVNKVG--QLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHCP 171 (349)
Q Consensus 96 ~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~ 171 (349)
+.-++|+|+++... ....|+..+......+++|.++.+.. +...+ .-...+++++++.++-.+.+...+-......
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 45799999999653 56666666655456667776666543 33333 2245899999999998888877653222111
Q ss_pred hhHHHHHHHHHHHcCCCchH
Q 045618 172 EDLLVHSKRILDYANGNPLA 191 (349)
Q Consensus 172 ~~~~~~~~~i~~~c~glPLA 191 (349)
..+....|++.++|-+..
T Consensus 710 --~~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 710 --TEEGLQAILYIAEGDMRR 727 (846)
T ss_pred --CHHHHHHHHHHcCCCHHH
Confidence 134677889999997743
No 74
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.04 E-value=0.044 Score=50.47 Aligned_cols=89 Identities=12% Similarity=0.191 Sum_probs=60.8
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhcccC-cccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNFG-VGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~~-~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++=.+|+|+++.. .....|+..+.+-.+++.+|++|.++ .+...+. -...+.+.+++.++..+.+.... ..
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~-~~--- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQS-SA--- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHh-cc---
Confidence 45667889999854 45677777666556677777777665 3444432 24589999999999998887753 11
Q ss_pred ChhHHHHHHHHHHHcCCCch
Q 045618 171 PEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPL 190 (349)
. ...+...+..++|.|+
T Consensus 182 ~---~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 182 E---ISEILTALRINYGRPL 198 (325)
T ss_pred C---hHHHHHHHHHcCCCHH
Confidence 1 1225567788999995
No 75
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.19 Score=50.19 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=59.3
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeC-cchhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTR-DRRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR-~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. ...+.|+..+......+.+|++|. ...+...+ .-...+++.+++.++..+.+.+.+......
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999843 456666666655455665555554 34443332 224579999999999888887766332221
Q ss_pred ChhHHHHHHHHHHHcCCCch
Q 045618 171 PEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPL 190 (349)
. ....+..|++..+|-+-
T Consensus 197 i--~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 197 V--DDAVYPLVIRAGGGSPR 214 (584)
T ss_pred C--CHHHHHHHHHHcCCCHH
Confidence 1 13445677888888764
No 76
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.95 E-value=0.12 Score=49.83 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=54.8
Q ss_pred HHHHhCCCceEEEEecCCCc---hhH-HHHHcccCC-CCCCcEEEEEeC-cchhhc--------ccCcccEEEcCCCChH
Q 045618 89 VRERLRRTKVLIVLDDVNKV---GQL-EYLIGGLER-FGPGSRIIVTTR-DRRVLD--------NFGVGNIYKVNGLKYR 154 (349)
Q Consensus 89 l~~~L~~~~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~~~~IlvTTR-~~~~~~--------~~~~~~~~~l~~L~~~ 154 (349)
+++......-+|++||+... ... +.+...+.. ...+..||+||. .+.-.. .+.....+.+++.+.+
T Consensus 187 f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e 266 (440)
T PRK14088 187 FREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_pred HHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHH
Confidence 34444444568999999732 111 122221110 023457888875 332211 1223447889999999
Q ss_pred hHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCc
Q 045618 155 EALELFCNCAFKENHCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 155 ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glP 189 (349)
+-..++.+.+....... .++.+..|++.+.|..
T Consensus 267 ~r~~IL~~~~~~~~~~l--~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 267 TRKKIARKMLEIEHGEL--PEEVLNFVAENVDDNL 299 (440)
T ss_pred HHHHHHHHHHHhcCCCC--CHHHHHHHHhccccCH
Confidence 99999998874332221 1355666777666643
No 77
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.91 E-value=0.036 Score=54.06 Aligned_cols=98 Identities=10% Similarity=0.069 Sum_probs=59.7
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCc-chhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRD-RRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. ...+.|+..+....+...+|++|.+ ..+...+ .....+.+.+++.++-...+...+-.....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~ 197 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE 197 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 56679999999854 3455665555443445555555543 3333222 223478999999999888888765332221
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRV 194 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~ 194 (349)
. .++.+..|++.++|.+..+..
T Consensus 198 i--d~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 198 Y--EEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHH
Confidence 1 235566788888887654433
No 78
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.88 E-value=0.092 Score=49.89 Aligned_cols=91 Identities=19% Similarity=0.266 Sum_probs=52.6
Q ss_pred CCceEEEEecCCCc------------hh----HHHHHcccCC--CCCCcEEEEEeCcchhhcc-c----CcccEEEcCCC
Q 045618 95 RTKVLIVLDDVNKV------------GQ----LEYLIGGLER--FGPGSRIIVTTRDRRVLDN-F----GVGNIYKVNGL 151 (349)
Q Consensus 95 ~~~~LlVlDdv~~~------------~~----~~~l~~~~~~--~~~~~~IlvTTR~~~~~~~-~----~~~~~~~l~~L 151 (349)
....+|+||+++.. .. +..++..+.. ...+..||.||...+.... + .....+++++.
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 45789999999743 11 2223322221 1235667777766543221 1 12457999999
Q ss_pred ChHhHHHHHHHhhccCCCCC-hhHHHHHHHHHHHcCCCc
Q 045618 152 KYREALELFCNCAFKENHCP-EDLLVHSKRILDYANGNP 189 (349)
Q Consensus 152 ~~~ea~~L~~~~a~~~~~~~-~~~~~~~~~i~~~c~glP 189 (349)
+.++-.++|+.+..+..... .. ...+++.+.|.-
T Consensus 303 ~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 303 DEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 99999999998764333221 22 345666666643
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.87 E-value=0.089 Score=47.04 Aligned_cols=69 Identities=10% Similarity=0.081 Sum_probs=42.1
Q ss_pred ceEEEEecCCC----------chhHHHHHcccCCCCCCcEEEEEeCcchhhc------cc--CcccEEEcCCCChHhHHH
Q 045618 97 KVLIVLDDVNK----------VGQLEYLIGGLERFGPGSRIIVTTRDRRVLD------NF--GVGNIYKVNGLKYREALE 158 (349)
Q Consensus 97 ~~LlVlDdv~~----------~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~------~~--~~~~~~~l~~L~~~ea~~ 158 (349)
..+|++|+++. .+....+............+++++....... .+ .....+++++++.++-.+
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~ 185 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELME 185 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHH
Confidence 35899999974 2245556555544444445566654432211 11 123468899999999999
Q ss_pred HHHHhhc
Q 045618 159 LFCNCAF 165 (349)
Q Consensus 159 L~~~~a~ 165 (349)
++.+.+.
T Consensus 186 Il~~~~~ 192 (261)
T TIGR02881 186 IAERMVK 192 (261)
T ss_pred HHHHHHH
Confidence 9987763
No 80
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.87 E-value=0.13 Score=49.96 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=57.1
Q ss_pred HHHHhCCCceEEEEecCCCc---h-hHHHHHcccCC-CCCCcEEEEEeCcch--h-------hcccCcccEEEcCCCChH
Q 045618 89 VRERLRRTKVLIVLDDVNKV---G-QLEYLIGGLER-FGPGSRIIVTTRDRR--V-------LDNFGVGNIYKVNGLKYR 154 (349)
Q Consensus 89 l~~~L~~~~~LlVlDdv~~~---~-~~~~l~~~~~~-~~~~~~IlvTTR~~~--~-------~~~~~~~~~~~l~~L~~~ 154 (349)
+.+.+. +.-+|+|||++.. . ..+.+...+.. ...+..||+||.... + ...+.....+++++++.+
T Consensus 205 ~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~ 283 (450)
T PRK00149 205 FKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLE 283 (450)
T ss_pred HHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHH
Confidence 444444 3448999999632 1 11222221110 023455788776542 1 122333457999999999
Q ss_pred hHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchH
Q 045618 155 EALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLA 191 (349)
Q Consensus 155 ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLA 191 (349)
+-..++.+.+-...... .++...-|++.+.|-.-.
T Consensus 284 ~r~~il~~~~~~~~~~l--~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 284 TRIAILKKKAEEEGIDL--PDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHHHHHHHHcCCCC--CHHHHHHHHcCcCCCHHH
Confidence 99999999874432211 235567777777776553
No 81
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.86 E-value=0.11 Score=47.02 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=42.8
Q ss_pred ceEEEEecCCCc-----------hhHHHHHcccCCCCCCcEEEEEeCcchhhcc--c------CcccEEEcCCCChHhHH
Q 045618 97 KVLIVLDDVNKV-----------GQLEYLIGGLERFGPGSRIIVTTRDRRVLDN--F------GVGNIYKVNGLKYREAL 157 (349)
Q Consensus 97 ~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~--~------~~~~~~~l~~L~~~ea~ 157 (349)
.-+|+||++... +.+..|...+.....+.+||+++........ . .....+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 368999999622 2244555555444456677777654322111 1 11346899999999999
Q ss_pred HHHHHhh
Q 045618 158 ELFCNCA 164 (349)
Q Consensus 158 ~L~~~~a 164 (349)
+++...+
T Consensus 202 ~I~~~~l 208 (284)
T TIGR02880 202 VIAGLML 208 (284)
T ss_pred HHHHHHH
Confidence 9988876
No 82
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.85 E-value=0.009 Score=55.91 Aligned_cols=79 Identities=11% Similarity=-0.020 Sum_probs=43.0
Q ss_pred cCCCCCchhhHHHHHHh--------hhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHH
Q 045618 16 RATSCGIVKIRRCLMVF--------RLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPE 87 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f--------~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~ 87 (349)
..+++|.|||||++..+ +.+.|+++.+++. -...+++++++..+.-.........+.
T Consensus 174 IvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~---------------~EVtdiqrsIlg~vv~st~d~~~~~~~ 238 (416)
T PRK09376 174 IVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP---------------EEVTDMQRSVKGEVVASTFDEPAERHV 238 (416)
T ss_pred EeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch---------------hHHHHHHHHhcCcEEEECCCCCHHHHH
Confidence 45668999999998544 4445655555541 144566666654332111111100000
Q ss_pred -------HHHHH--hCCCceEEEEecCCCch
Q 045618 88 -------YVRER--LRRTKVLIVLDDVNKVG 109 (349)
Q Consensus 88 -------~l~~~--L~~~~~LlVlDdv~~~~ 109 (349)
...+. -.+++++|++|++....
T Consensus 239 ~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 239 QVAEMVIEKAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEChHHHH
Confidence 11111 36799999999997543
No 83
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.83 E-value=0.24 Score=47.85 Aligned_cols=96 Identities=10% Similarity=0.082 Sum_probs=50.7
Q ss_pred HHHHhCCCceEEEEecCCCch----hHHHHHcccCC-CCCCcEEEEEeCcc-hh--------hcccCcccEEEcCCCChH
Q 045618 89 VRERLRRTKVLIVLDDVNKVG----QLEYLIGGLER-FGPGSRIIVTTRDR-RV--------LDNFGVGNIYKVNGLKYR 154 (349)
Q Consensus 89 l~~~L~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~~~~IlvTTR~~-~~--------~~~~~~~~~~~l~~L~~~ 154 (349)
++.... ..-+|++||+.... ..+.+...+.. ...+..||+||... .. ...+.....+.+++++.+
T Consensus 196 f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e 274 (445)
T PRK12422 196 FRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKE 274 (445)
T ss_pred HHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHH
Confidence 444444 34578889986431 11222221110 02355788888553 11 112233457889999999
Q ss_pred hHHHHHHHhhccCCCCChhHHHHHHHHHHHcCC
Q 045618 155 EALELFCNCAFKENHCPEDLLVHSKRILDYANG 187 (349)
Q Consensus 155 ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~g 187 (349)
+-..++.+.+-...... ..+...-|+..+.+
T Consensus 275 ~r~~iL~~k~~~~~~~l--~~evl~~la~~~~~ 305 (445)
T PRK12422 275 GLRSFLERKAEALSIRI--EETALDFLIEALSS 305 (445)
T ss_pred HHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCC
Confidence 99999988774332111 12334445555443
No 84
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.83 E-value=0.11 Score=47.86 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=61.2
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhcccC-cccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNFG-VGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~~-~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. .....|+..+.+-..++.+|++|.++ .+...+. -...+.+.+++.+++.+.+.... ..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC
Confidence 45678999999854 44566666665555677777777654 3444432 24578999999999988886531 11
Q ss_pred ChhHHHHHHHHHHHcCCCchHHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAVR 193 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~ 193 (349)
...+..++..++|.|+...
T Consensus 188 ----~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 188 ----ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred ----hHHHHHHHHHcCCCHHHHH
Confidence 2235678999999997553
No 85
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.77 E-value=0.42 Score=43.87 Aligned_cols=69 Identities=12% Similarity=0.242 Sum_probs=39.9
Q ss_pred CCceEEEEecCCCc--h-hHHHHHcccCCCCCCcEEEEEeCcchh-hccc-CcccEEEcCCCChHhHHHHHHHh
Q 045618 95 RTKVLIVLDDVNKV--G-QLEYLIGGLERFGPGSRIIVTTRDRRV-LDNF-GVGNIYKVNGLKYREALELFCNC 163 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~-~~~~l~~~~~~~~~~~~IlvTTR~~~~-~~~~-~~~~~~~l~~L~~~ea~~L~~~~ 163 (349)
+.+-++|+|+++.. . ....+...+.....++.+|+||..... ...+ .....+.++..+.++..+++...
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHH
Confidence 34568999999854 2 223333333333567788888865432 1111 12236777778888877766543
No 86
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.74 E-value=0.13 Score=45.92 Aligned_cols=153 Identities=15% Similarity=0.168 Sum_probs=89.3
Q ss_pred EEEEeCcchhhccc--CcccEEEcCCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhccCCH
Q 045618 127 IIVTTRDRRVLDNF--GVGNIYKVNGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQKSK 204 (349)
Q Consensus 127 IlvTTR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~~~ 204 (349)
|=.|||.-.+...+ ...-+.++.-.+.+|-.++..+.+.--.. +-.++.+.+|+++..|-|- ++.+.|++.
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPR---IAnRLLrRV-- 227 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPR---IANRLLRRV-- 227 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcH---HHHHHHHHH--
Confidence 44677765444433 23446788889999998888887722221 1224568899999999994 444444331
Q ss_pred HHHHHHHHHhhcCCC----CcHHHHHHHhHhcCChhHHHHHHHhcc-cCCC-CCHHHHHHHhccc-ccHHHhHH-HHhhC
Q 045618 205 LDWESALDNLKRISD----PDIYDVLKISYNEIKAEEKSLFLDIAC-FFNG-QDKDSVLKMIGDS-SFAHYGLN-VLVDK 276 (349)
Q Consensus 205 ~~~~~~l~~l~~~~~----~~l~~~l~~s~~~L~~~~~~~f~~la~-fp~~-~~~~~l~~~~~~~-~~~~~~l~-~L~~~ 276 (349)
.++..+... .... ......+.+--..|..-.++.+..+.- |.++ +-.+.+....+.+ ...++.++ .|+..
T Consensus 228 RDfa~V~~~--~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~ 305 (332)
T COG2255 228 RDFAQVKGD--GDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQ 305 (332)
T ss_pred HHHHHHhcC--CcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHh
Confidence 122211110 0000 112223333334455555555554443 4333 8888888888877 66666555 79999
Q ss_pred cceEEcCCCeEE
Q 045618 277 SLVTVSRGNQLQ 288 (349)
Q Consensus 277 sLl~~~~~~~~~ 288 (349)
+|+++...|+..
T Consensus 306 gfi~RTpRGR~a 317 (332)
T COG2255 306 GFIQRTPRGRIA 317 (332)
T ss_pred chhhhCCCccee
Confidence 999998877754
No 87
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.70 E-value=0.27 Score=45.17 Aligned_cols=91 Identities=16% Similarity=0.217 Sum_probs=61.6
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhcccC-cccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNFG-VGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~~-~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-.+|+|+++.. .....|+..+.+-.+++.+|.+|.++ .+...+. -...+.+++++.++..+.+.... ..
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~~ 182 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----IT 182 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----Cc
Confidence 44568899999854 45677777666556677776666665 4444442 24579999999999998886542 11
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRVL 195 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~~ 195 (349)
.+..+++.++|.|+.....
T Consensus 183 ------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 ------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ------hHHHHHHHcCCCHHHHHHH
Confidence 1346788999999865433
No 88
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.66 E-value=0.063 Score=52.77 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=62.1
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. +..+.|+..+....+.+.+|++|.++. +...+ .-...+++.+++.++....+...+......
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999854 345666666654455677676666542 22222 224589999999999988888766333222
Q ss_pred ChhHHHHHHHHHHHcCCCchHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl 192 (349)
. .++.+..|++.++|-+.-+
T Consensus 196 i--~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 196 Y--EPEALEILARSGNGSLRDT 215 (535)
T ss_pred C--CHHHHHHHHHHcCCcHHHH
Confidence 1 2356678888888887443
No 89
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.57 E-value=0.17 Score=50.32 Aligned_cols=97 Identities=11% Similarity=0.108 Sum_probs=62.3
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.+++-++|+|+++.. ..++.|+..+....+.+.+|.+|.+. .+...+ .-...+++.+++.++-.+.+...+.....
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 356678999999854 34667777665545566666665443 333222 22346899999999988888876633332
Q ss_pred CChhHHHHHHHHHHHcCCCchHH
Q 045618 170 CPEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPLAl 192 (349)
.. .++.+..|++.++|-+-.+
T Consensus 197 ~i--d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 197 KY--EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred CC--CHHHHHHHHHHcCCCHHHH
Confidence 21 2455677888888877533
No 90
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.51 E-value=1.1 Score=46.56 Aligned_cols=142 Identities=8% Similarity=0.019 Sum_probs=70.7
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeeh--hhhccHHHHHHHHHHHhhcccCCCCCCHHH---HHH
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRE--SRSIMNQRVSNKFLGWLVEQEQIRTPNLPE---YVR 90 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~--~~~~~~~~l~~~il~~l~~~~~~~~~~~~~---~l~ 90 (349)
..|+-|.|||+.++.+.+...-.. .. .....+.++.+ ..-.....+...|..++.+..........+ .+.
T Consensus 786 IyG~PGTGKTATVK~VLrELqeea-eq----k~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF 860 (1164)
T PTZ00112 786 ISGMPGTGKTATVYSVIQLLQHKT-KQ----KLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLF 860 (1164)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHH-hh----ccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHH
Confidence 356679999999997654321000 00 00011223333 222355666677777774433322222222 444
Q ss_pred HHhCC---CceEEEEecCCCch-----hHHHHHcccCCCCCCcEEEE--EeCcchh--------hcccCcccEEEcCCCC
Q 045618 91 ERLRR---TKVLIVLDDVNKVG-----QLEYLIGGLERFGPGSRIIV--TTRDRRV--------LDNFGVGNIYKVNGLK 152 (349)
Q Consensus 91 ~~L~~---~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~Ilv--TTR~~~~--------~~~~~~~~~~~l~~L~ 152 (349)
..+.. ...+||||+++... .+-.|..... ..+++|+| +|..-+. ...++ ...+..+|++
T Consensus 861 ~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYT 937 (1164)
T PTZ00112 861 NQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYK 937 (1164)
T ss_pred hhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCC
Confidence 44422 24699999998432 1222222111 23444433 3332111 11122 1236679999
Q ss_pred hHhHHHHHHHhhc
Q 045618 153 YREALELFCNCAF 165 (349)
Q Consensus 153 ~~ea~~L~~~~a~ 165 (349)
.++-.+++..++.
T Consensus 938 aEQL~dILk~RAe 950 (1164)
T PTZ00112 938 GDEIEKIIKERLE 950 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998874
No 91
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.51 E-value=0.33 Score=49.43 Aligned_cols=98 Identities=16% Similarity=0.108 Sum_probs=60.5
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEE-EEeCcchhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRII-VTTRDRRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~Il-vTTR~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. ..+..|+..+......+.+| +|++...+...+ .-...+++.+++.++-...+...+-.....
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 56678999999854 45666766554434455544 454444443332 223589999999999888887755322211
Q ss_pred ChhHHHHHHHHHHHcCCCch-HHHH
Q 045618 171 PEDLLVHSKRILDYANGNPL-AVRV 194 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPL-Al~~ 194 (349)
. ....+..|++.++|-+- |+..
T Consensus 197 i--d~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 197 Y--EKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 13456788888988664 4433
No 92
>CHL00181 cbbX CbbX; Provisional
Probab=95.24 E-value=0.37 Score=43.72 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=44.1
Q ss_pred ceEEEEecCCCc-----------hhHHHHHcccCCCCCCcEEEEEeCcchhhcc------c--CcccEEEcCCCChHhHH
Q 045618 97 KVLIVLDDVNKV-----------GQLEYLIGGLERFGPGSRIIVTTRDRRVLDN------F--GVGNIYKVNGLKYREAL 157 (349)
Q Consensus 97 ~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~------~--~~~~~~~l~~L~~~ea~ 157 (349)
.-+|+||++... +..+.|...+.....+..||.++........ + .....+.+++++.+|-.
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 358999999642 2344555544444556777777754332111 1 12447999999999999
Q ss_pred HHHHHhhc
Q 045618 158 ELFCNCAF 165 (349)
Q Consensus 158 ~L~~~~a~ 165 (349)
+++...+-
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 99888773
No 93
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.20 E-value=0.24 Score=44.84 Aligned_cols=172 Identities=12% Similarity=0.005 Sum_probs=93.6
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHH---HHHHH
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPE---YVRER 92 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~---~l~~~ 92 (349)
.+|.+|+|||++++...+. .-..... .....-+..+..-..++...+...||..+.-... .-.+..+ .....
T Consensus 66 ivG~snnGKT~Ii~rF~~~-hp~~~d~---~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~-~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 66 IVGDSNNGKTMIIERFRRL-HPPQSDE---DAERIPVVYVQMPPEPDERRFYSAILEALGAPYR-PRDRVAKLEQQVLRL 140 (302)
T ss_pred EecCCCCcHHHHHHHHHHH-CCCCCCC---CCccccEEEEecCCCCChHHHHHHHHHHhCcccC-CCCCHHHHHHHHHHH
Confidence 4566899999999643332 2212111 1111233446666778999999999999833222 2223322 55566
Q ss_pred hCC-CceEEEEecCCCc-----hhHHHH---HcccCCCCCCcEEEEEeCcchhhcccC-----cccEEEcCCCChHh-HH
Q 045618 93 LRR-TKVLIVLDDVNKV-----GQLEYL---IGGLERFGPGSRIIVTTRDRRVLDNFG-----VGNIYKVNGLKYRE-AL 157 (349)
Q Consensus 93 L~~-~~~LlVlDdv~~~-----~~~~~l---~~~~~~~~~~~~IlvTTR~~~~~~~~~-----~~~~~~l~~L~~~e-a~ 157 (349)
++. +--+||+|.+++. .+-+.+ +..+.+.-.-+-|.|-|++.--+-... -..++.++.-..++ ..
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~ 220 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFR 220 (302)
T ss_pred HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHH
Confidence 665 4568999999753 222222 233333344566777776653322111 12356666655443 44
Q ss_pred HHHHHhhcc---CCCCChhHHHHHHHHHHHcCCCchHH
Q 045618 158 ELFCNCAFK---ENHCPEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 158 ~L~~~~a~~---~~~~~~~~~~~~~~i~~~c~glPLAl 192 (349)
.|+...... .....-...+++..|...++|+.--+
T Consensus 221 ~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 221 RLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 454432211 11122234678899999999987443
No 94
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.72 Score=43.38 Aligned_cols=252 Identities=14% Similarity=0.113 Sum_probs=124.8
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCC--HHHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPN--LPEYVRERL 93 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~--~~~~l~~~L 93 (349)
.+|+-|.|||..++.+++...-..-... +..|.-....++-.+..+|+.++.+.+...... ..+.+.+.+
T Consensus 47 iyG~~GTGKT~~~~~v~~~l~~~~~~~~--------~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~ 118 (366)
T COG1474 47 IYGPTGTGKTATVKFVMEELEESSANVE--------VVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNL 118 (366)
T ss_pred EECCCCCCHhHHHHHHHHHHHhhhccCc--------eEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHH
Confidence 4566899999999977654332111110 122333334477788888888875333333322 233666666
Q ss_pred CC--CceEEEEecCCCch-----hHHHHHcccCCCCCCcEEEEEeCcchhh--------cccCcccEEEcCCCChHhHHH
Q 045618 94 RR--TKVLIVLDDVNKVG-----QLEYLIGGLERFGPGSRIIVTTRDRRVL--------DNFGVGNIYKVNGLKYREALE 158 (349)
Q Consensus 94 ~~--~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~IlvTTR~~~~~--------~~~~~~~~~~l~~L~~~ea~~ 158 (349)
.. +..++|||+++... .+-.|............+|..+-+-... ..++. ..+..+|-+.+|-.+
T Consensus 119 ~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~ 197 (366)
T COG1474 119 SKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYD 197 (366)
T ss_pred HhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHH
Confidence 55 78999999997432 2333333322221122233333333222 12222 247789999999999
Q ss_pred HHHHhhcc---CCCCChhHHHHHHHHHHHcC-CCchHHHHHhHH--hccC------CHHHHHHHHHHhhcCCCCcHHHHH
Q 045618 159 LFCNCAFK---ENHCPEDLLVHSKRILDYAN-GNPLAVRVLGSF--LRQK------SKLDWESALDNLKRISDPDIYDVL 226 (349)
Q Consensus 159 L~~~~a~~---~~~~~~~~~~~~~~i~~~c~-glPLAl~~~a~~--l~~~------~~~~~~~~l~~l~~~~~~~l~~~l 226 (349)
++...+-. .....+..-+.+..++..-+ --=.||.++-.. +... +...-....+.. -....
T Consensus 198 Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~-------~~~~~ 270 (366)
T COG1474 198 ILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI-------ERDVL 270 (366)
T ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh-------hHHHH
Confidence 99877632 22222222222223333333 222333322221 1110 111111111110 11122
Q ss_pred HHhHhcCChhHHHHHHHhcccCCCCCHHHHHHHhccc-----c---cHHHhHHHHhhCcceEEcC
Q 045618 227 KISYNEIKAEEKSLFLDIACFFNGQDKDSVLKMIGDS-----S---FAHYGLNVLVDKSLVTVSR 283 (349)
Q Consensus 227 ~~s~~~L~~~~~~~f~~la~fp~~~~~~~l~~~~~~~-----~---~~~~~l~~L~~~sLl~~~~ 283 (349)
.-....|+.+.+-.+..++.--.++....+......- . ...+.+.+|...++|....
T Consensus 271 ~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~~ii~~L~~lgiv~~~~ 335 (366)
T COG1474 271 EEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFSDIISELEGLGIVSASL 335 (366)
T ss_pred HHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHHHHHHHHHhcCeEEeee
Confidence 3346778877766554443332446655555443322 2 3456788999999998653
No 95
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.19 E-value=0.45 Score=44.75 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=56.9
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCc-chhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRD-RRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. ..++.+...+......+.+|++|.. ..+...+ .....+++++++.++....+...+......
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 45568999999754 3356665544333345555555533 3333222 223478999999999888888766433321
Q ss_pred ChhHHHHHHHHHHHcCCCch
Q 045618 171 PEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPL 190 (349)
- .++.+..|++.++|-+-
T Consensus 187 i--~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 187 F--EDDALHIIAQKADGALR 204 (367)
T ss_pred C--CHHHHHHHHHhCCCCHH
Confidence 1 13566778888887554
No 96
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.16 E-value=0.31 Score=48.58 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=59.0
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.++.-++|+|+++.. ..+..|+..+......+.+|++|.+. .+...+ .-...+++.+++.++..+.+...+-....
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 346678899999854 45667766655434455555555433 333322 22457889999999988888876633222
Q ss_pred CChhHHHHHHHHHHHcCCCchH
Q 045618 170 CPEDLLVHSKRILDYANGNPLA 191 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPLA 191 (349)
.. ....+..|++.++|-+..
T Consensus 197 ~i--~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 197 EY--EDEALRLIARAAEGGMRD 216 (559)
T ss_pred CC--CHHHHHHHHHHcCCCHHH
Confidence 11 134566778888876653
No 97
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.12 E-value=0.81 Score=44.38 Aligned_cols=94 Identities=12% Similarity=0.109 Sum_probs=58.3
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCc-chhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRD-RRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+.+-++|+|+++.. ...+.|+..+......+.+|++|.+ ..+...+ .....+++.++++++-...+...+-.....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 56778999999754 3455555555443456666666543 3333332 234579999999999888887765332211
Q ss_pred ChhHHHHHHHHHHHcCCCch
Q 045618 171 PEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPL 190 (349)
. .++.+..|++.++|-+-
T Consensus 200 i--~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 200 T--SREALLPIARAAQGSLR 217 (451)
T ss_pred C--CHHHHHHHHHHcCCCHH
Confidence 1 23556788888888653
No 98
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.08 E-value=0.51 Score=47.58 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=59.6
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. +....|+..+......+.+|++|.+. .+...+ .-...+++.+++.++....+...+......
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 45668999999854 44666766665444455555555443 333332 224578888999998888777665332211
Q ss_pred ChhHHHHHHHHHHHcCCCchHHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAVR 193 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~ 193 (349)
. ..+.+..|++.++|.+..+.
T Consensus 200 i--s~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 200 I--EPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred C--CHHHHHHHHHHcCCCHHHHH
Confidence 1 12456788888988775443
No 99
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.07 E-value=0.37 Score=48.07 Aligned_cols=97 Identities=15% Similarity=0.211 Sum_probs=54.8
Q ss_pred HHHHhCCCceEEEEecCCCc---hhH-HHHHcccCC-CCCCcEEEEEeCcch---------hhcccCcccEEEcCCCChH
Q 045618 89 VRERLRRTKVLIVLDDVNKV---GQL-EYLIGGLER-FGPGSRIIVTTRDRR---------VLDNFGVGNIYKVNGLKYR 154 (349)
Q Consensus 89 l~~~L~~~~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~~~~IlvTTR~~~---------~~~~~~~~~~~~l~~L~~~ 154 (349)
+++.+.. -=+|||||+... ..+ +.|...+.. ...+..|||||+... +...+...-.+++.+.+.+
T Consensus 371 f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~E 449 (617)
T PRK14086 371 FRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELE 449 (617)
T ss_pred HHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHH
Confidence 4444443 357888999633 112 222222211 123567888887632 2222334568999999999
Q ss_pred hHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCC
Q 045618 155 EALELFCNCAFKENHCPEDLLVHSKRILDYANGN 188 (349)
Q Consensus 155 ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~gl 188 (349)
.-..++.+++-......+ ++++.-|++.+.+.
T Consensus 450 tR~aIL~kka~~r~l~l~--~eVi~yLa~r~~rn 481 (617)
T PRK14086 450 TRIAILRKKAVQEQLNAP--PEVLEFIASRISRN 481 (617)
T ss_pred HHHHHHHHHHHhcCCCCC--HHHHHHHHHhccCC
Confidence 999999988744332221 34555666655544
No 100
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.04 E-value=0.071 Score=53.30 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=58.6
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEe-Ccchhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTT-RDRRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTT-R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. ...+.|+..+....+.+.+|++| ....+...+ .-...+++.+++.++....+...+-.....
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 45568999999854 34566666555444565555555 444444333 223478889999998888777655332221
Q ss_pred ChhHHHHHHHHHHHcCCCc-hHHHH
Q 045618 171 PEDLLVHSKRILDYANGNP-LAVRV 194 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glP-LAl~~ 194 (349)
. .++.+..|++.++|-. .|+..
T Consensus 198 i--~~~al~~la~~a~G~lr~al~~ 220 (576)
T PRK14965 198 I--SDAALALVARKGDGSMRDSLST 220 (576)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1345667788888755 34433
No 101
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.33 Score=48.88 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=60.2
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEe-Ccchhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTT-RDRRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTT-R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. ...+.|+..+..-...+.+|++| ....+...+ .-...+++.+++.++-...+.+.+-.....
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 35568899999864 34666666655444556655544 444444433 234589999999999988888766333322
Q ss_pred ChhHHHHHHHHHHHcCCCch
Q 045618 171 PEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPL 190 (349)
. ..+.+..|++.++|-.-
T Consensus 200 i--~~~al~~La~~s~gdlr 217 (614)
T PRK14971 200 A--EPEALNVIAQKADGGMR 217 (614)
T ss_pred C--CHHHHHHHHHHcCCCHH
Confidence 1 13456788888888654
No 102
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.99 E-value=0.25 Score=47.04 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=54.6
Q ss_pred HHHhCCCceEEEEecCCCc------------h----hHHHHHcccCC--CCCCcEEEEEeCcchhhcc--c---CcccEE
Q 045618 90 RERLRRTKVLIVLDDVNKV------------G----QLEYLIGGLER--FGPGSRIIVTTRDRRVLDN--F---GVGNIY 146 (349)
Q Consensus 90 ~~~L~~~~~LlVlDdv~~~------------~----~~~~l~~~~~~--~~~~~~IlvTTR~~~~~~~--~---~~~~~~ 146 (349)
.......+++|+||+++.. . .+..++..+.. ...+..||.||...+.... . .....+
T Consensus 232 ~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I 311 (398)
T PTZ00454 232 RLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKI 311 (398)
T ss_pred HHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEE
Confidence 3334457899999998632 1 12233332221 1245678888876654322 1 134568
Q ss_pred EcCCCChHhHHHHHHHhhccCCC-CChhHHHHHHHHHHHcCCCc
Q 045618 147 KVNGLKYREALELFCNCAFKENH-CPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 147 ~l~~L~~~ea~~L~~~~a~~~~~-~~~~~~~~~~~i~~~c~glP 189 (349)
+++..+.++..++|......... .... ..++++...|.-
T Consensus 312 ~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 312 EFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred EeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 89999999988888876533221 1112 345666666654
No 103
>PRK08116 hypothetical protein; Validated
Probab=94.98 E-value=0.11 Score=46.54 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=25.0
Q ss_pred HHHHHhCCCceEEEEecCC--CchhH--HHHHcccCC-CCCCcEEEEEeCcc
Q 045618 88 YVRERLRRTKVLIVLDDVN--KVGQL--EYLIGGLER-FGPGSRIIVTTRDR 134 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~--~~~~~--~~l~~~~~~-~~~~~~IlvTTR~~ 134 (349)
.+.+.+.+-. ||||||+. ....| ..+...+.. ...+..+|+||...
T Consensus 171 ~~~~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 171 EIIRSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HHHHHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4555566555 89999994 33333 222222211 13456788888644
No 104
>PRK06526 transposase; Provisional
Probab=94.90 E-value=0.066 Score=47.65 Aligned_cols=16 Identities=13% Similarity=-0.058 Sum_probs=13.0
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|.|||.||...
T Consensus 103 l~Gp~GtGKThLa~al 118 (254)
T PRK06526 103 FLGPPGTGKTHLAIGL 118 (254)
T ss_pred EEeCCCCchHHHHHHH
Confidence 5667899999999843
No 105
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.85 E-value=0.073 Score=49.37 Aligned_cols=89 Identities=13% Similarity=0.087 Sum_probs=60.4
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhcccC-cccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNFG-VGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~~-~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-.+|+|+++.. +....|+..+.+-..++.+|.+|.++. +...+. -...+.+++++.++..+.+.... + .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~--~- 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T--M- 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C--C-
Confidence 56678999999854 456777776655566777776666644 444432 23478999999999988886542 1 1
Q ss_pred ChhHHHHHHHHHHHcCCCch
Q 045618 171 PEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPL 190 (349)
+ .+.+..++..++|.|.
T Consensus 183 ~---~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 183 S---QDALLAALRLSAGAPG 199 (334)
T ss_pred C---HHHHHHHHHHcCCCHH
Confidence 1 2335678899999995
No 106
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.78 E-value=1 Score=41.93 Aligned_cols=88 Identities=18% Similarity=0.210 Sum_probs=58.4
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhcccC-cccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNFG-VGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~~-~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. +....|+..+.+-.+++.+|.+|.++ .+...+. -...+.+++++.++..+.+.... ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 45568899999854 45777777776556677666666554 4444432 24589999999999998887652 11
Q ss_pred ChhHHHHHHHHHHHcCCCchHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAV 192 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl 192 (349)
. ...++..++|.|+..
T Consensus 207 ~------~~~~l~~~~Gsp~~A 222 (342)
T PRK06964 207 D------ADALLAEAGGAPLAA 222 (342)
T ss_pred h------HHHHHHHcCCCHHHH
Confidence 1 123577789999643
No 107
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.75 E-value=0.52 Score=43.62 Aligned_cols=144 Identities=9% Similarity=0.096 Sum_probs=80.5
Q ss_pred CCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhCCCc
Q 045618 18 TSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPEYVRERLRRTK 97 (349)
Q Consensus 18 ~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~~~ 97 (349)
||-|.|||+||+..-...- +.. ..+|+.+.......=.+.|..+- +=...+.++|
T Consensus 169 GppG~GKTtlArlia~tsk----~~S--------yrfvelSAt~a~t~dvR~ife~a-------------q~~~~l~krk 223 (554)
T KOG2028|consen 169 GPPGTGKTTLARLIASTSK----KHS--------YRFVELSATNAKTNDVRDIFEQA-------------QNEKSLTKRK 223 (554)
T ss_pred cCCCCchHHHHHHHHhhcC----CCc--------eEEEEEeccccchHHHHHHHHHH-------------HHHHhhhcce
Confidence 3469999999985443211 111 24555554322222223333221 1223456788
Q ss_pred eEEEEecCCC--chhHHHHHcccCCCCCCcEEEE--EeCcchhh---cccCcccEEEcCCCChHhHHHHHHHhhc--c-C
Q 045618 98 VLIVLDDVNK--VGQLEYLIGGLERFGPGSRIIV--TTRDRRVL---DNFGVGNIYKVNGLKYREALELFCNCAF--K-E 167 (349)
Q Consensus 98 ~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~Ilv--TTR~~~~~---~~~~~~~~~~l~~L~~~ea~~L~~~~a~--~-~ 167 (349)
..|.+|.|+. ..+-+.|+|.. .+|..++| ||-++... ..+.-..++-|++|..++-..++.+..- + .
T Consensus 224 TilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~ds 300 (554)
T KOG2028|consen 224 TILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDS 300 (554)
T ss_pred eEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccc
Confidence 9999999974 45556676765 35665555 56555421 1123345889999999999998887331 1 1
Q ss_pred C-----CCC---hhHHHHHHHHHHHcCCCc
Q 045618 168 N-----HCP---EDLLVHSKRILDYANGNP 189 (349)
Q Consensus 168 ~-----~~~---~~~~~~~~~i~~~c~glP 189 (349)
. .+. .-...+..-++..|.|-.
T Consensus 301 er~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 301 ERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred cccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 1 111 123455666667777643
No 108
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.58 E-value=0.067 Score=41.82 Aligned_cols=18 Identities=11% Similarity=-0.055 Sum_probs=14.4
Q ss_pred CCCCCchhhHHHHHHhhh
Q 045618 17 ATSCGIVKIRRCLMVFRL 34 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~~ 34 (349)
.|+-|.|||++|+.....
T Consensus 4 ~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQY 21 (132)
T ss_dssp ESSTTSSHHHHHHHHHHH
T ss_pred ECcCCCCeeHHHHHHHhh
Confidence 577899999999966544
No 109
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.56 E-value=0.48 Score=46.58 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=54.8
Q ss_pred HHHHHhCCCceEEEEecCCCch----------------hHHHHHcccCC--CCCCcEEEEEeCcchhhcc-c----Cccc
Q 045618 88 YVRERLRRTKVLIVLDDVNKVG----------------QLEYLIGGLER--FGPGSRIIVTTRDRRVLDN-F----GVGN 144 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~~~~IlvTTR~~~~~~~-~----~~~~ 144 (349)
.+.......+++|+||+++... .+..++..+.. ...+..||.||..++.... + ....
T Consensus 139 ~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~ 218 (495)
T TIGR01241 139 LFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDR 218 (495)
T ss_pred HHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceE
Confidence 3344444567899999995321 12233322221 1234456666655442221 1 2345
Q ss_pred EEEcCCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCc
Q 045618 145 IYKVNGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 145 ~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glP 189 (349)
.+.++..+.++-.++|.......... . ......+++.+.|.-
T Consensus 219 ~i~i~~Pd~~~R~~il~~~l~~~~~~-~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 219 QVVVDLPDIKGREEILKVHAKNKKLA-P--DVDLKAVARRTPGFS 260 (495)
T ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCC-c--chhHHHHHHhCCCCC
Confidence 78899999999999998876332221 1 122447777777743
No 110
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.52 E-value=0.72 Score=42.44 Aligned_cols=95 Identities=18% Similarity=0.260 Sum_probs=59.7
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcchhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRRVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHCP 171 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~ 171 (349)
+.+-++|+|+++.. .....|+..+..-.+..-|++|+....+...+ .-...+++++++.++..+.+.+.... ..
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~-~~-- 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE-EI-- 199 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc-cc--
Confidence 46778999999854 34556665554434333444444444444444 23468999999999999999876421 11
Q ss_pred hhHHHHHHHHHHHcCCCchHHHH
Q 045618 172 EDLLVHSKRILDYANGNPLAVRV 194 (349)
Q Consensus 172 ~~~~~~~~~i~~~c~glPLAl~~ 194 (349)
.......++..++|-|.....
T Consensus 200 --~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 200 --LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred --chhHHHHHHHHcCCCHHHHHH
Confidence 111135788999999965544
No 111
>CHL00176 ftsH cell division protein; Validated
Probab=94.48 E-value=0.56 Score=47.40 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=57.8
Q ss_pred HHHHHHhCCCceEEEEecCCCc----------------hhHHHHHcccCC--CCCCcEEEEEeCcchhhcc-c----Ccc
Q 045618 87 EYVRERLRRTKVLIVLDDVNKV----------------GQLEYLIGGLER--FGPGSRIIVTTRDRRVLDN-F----GVG 143 (349)
Q Consensus 87 ~~l~~~L~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~--~~~~~~IlvTTR~~~~~~~-~----~~~ 143 (349)
+.+.......+++|+||+++.. ..+..++..+.. ...+..||.||...+.... + ...
T Consensus 266 ~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd 345 (638)
T CHL00176 266 DLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFD 345 (638)
T ss_pred HHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCc
Confidence 3455555678899999999632 113333333221 1235566667766543221 1 133
Q ss_pred cEEEcCCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCC
Q 045618 144 NIYKVNGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGN 188 (349)
Q Consensus 144 ~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~gl 188 (349)
..+.++..+.++-.++|+.++...... .......+++.+.|.
T Consensus 346 ~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 346 RQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPGF 387 (638)
T ss_pred eEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCCC
Confidence 578899999999999998887432211 123355677777773
No 112
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.47 E-value=0.056 Score=50.88 Aligned_cols=79 Identities=14% Similarity=0.058 Sum_probs=44.2
Q ss_pred cCCCCCchhhHHHHHHhh--------hhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHH-
Q 045618 16 RATSCGIVKIRRCLMVFR--------LCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLP- 86 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~--------~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~- 86 (349)
.+++.|.|||+++...+. ...|+.+.++ +.....+++++++..+.-..........
T Consensus 173 IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE---------------R~~EVtDLqrsIlg~Vvast~d~p~~~~~ 237 (415)
T TIGR00767 173 IVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE---------------RPEEVTDMQRSVKGEVVASTFDEPASRHV 237 (415)
T ss_pred EECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC---------------CCccHHHHHHHhhceEEEecCCCChHHHH
Confidence 456679999999885443 2345444433 1126777888886555221111111111
Q ss_pred ---H----HH-HHHhCCCceEEEEecCCCch
Q 045618 87 ---E----YV-RERLRRTKVLIVLDDVNKVG 109 (349)
Q Consensus 87 ---~----~l-~~~L~~~~~LlVlDdv~~~~ 109 (349)
+ .. +..-.+++++|++|.+....
T Consensus 238 ~va~~v~e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 238 QVAEMVIEKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEChhHHH
Confidence 1 11 22245799999999997554
No 113
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.31 E-value=0.11 Score=50.86 Aligned_cols=71 Identities=11% Similarity=0.259 Sum_probs=43.2
Q ss_pred CCCceEEEEecCCCc---------hh-----HHHHHcccCCC--CCCcEEEEEeCcchhhcc-c----CcccEEEcCCCC
Q 045618 94 RRTKVLIVLDDVNKV---------GQ-----LEYLIGGLERF--GPGSRIIVTTRDRRVLDN-F----GVGNIYKVNGLK 152 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~---------~~-----~~~l~~~~~~~--~~~~~IlvTTR~~~~~~~-~----~~~~~~~l~~L~ 152 (349)
.+++++|+||+++.. .+ +..|+..+... ..+..||.||..++.... + .....++++..+
T Consensus 287 ~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd 366 (512)
T TIGR03689 287 DGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPD 366 (512)
T ss_pred cCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCC
Confidence 357899999999732 11 23343333211 234556666655543221 1 123468999999
Q ss_pred hHhHHHHHHHhh
Q 045618 153 YREALELFCNCA 164 (349)
Q Consensus 153 ~~ea~~L~~~~a 164 (349)
.++..++|..+.
T Consensus 367 ~e~r~~Il~~~l 378 (512)
T TIGR03689 367 AEAAADIFSKYL 378 (512)
T ss_pred HHHHHHHHHHHh
Confidence 999999999886
No 114
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.28 E-value=0.27 Score=45.48 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=49.8
Q ss_pred CceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCCC
Q 045618 96 TKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHCP 171 (349)
Q Consensus 96 ~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~ 171 (349)
++-++|+|+++.. .....++..+.....++.+|++|.+.. +...+ .-...+.+.+++.++..+.+.... ...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~ 188 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VAE 188 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CCc
Confidence 3444566888743 344555544443344566777777754 33332 224578899999999988886541 111
Q ss_pred hhHHHHHHHHHHHcCCCchH
Q 045618 172 EDLLVHSKRILDYANGNPLA 191 (349)
Q Consensus 172 ~~~~~~~~~i~~~c~glPLA 191 (349)
. . ..+..++|-|+.
T Consensus 189 -~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 189 -P-E----ERLAFHSGAPLF 202 (325)
T ss_pred -H-H----HHHHHhCCChhh
Confidence 1 1 123568898854
No 115
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.18 E-value=0.47 Score=44.96 Aligned_cols=79 Identities=14% Similarity=0.218 Sum_probs=46.8
Q ss_pred HHHHHhCCCceEEEEecCCCc---hhH-HHHHcccC-CCCCCcEEEEEeCcchh---------hcccCcccEEEcCCCCh
Q 045618 88 YVRERLRRTKVLIVLDDVNKV---GQL-EYLIGGLE-RFGPGSRIIVTTRDRRV---------LDNFGVGNIYKVNGLKY 153 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~---~~~-~~l~~~~~-~~~~~~~IlvTTR~~~~---------~~~~~~~~~~~l~~L~~ 153 (349)
.+++.. .-=++++||++-. +.+ +.+...+. -...|..||+|++..+- ...+...-.+++.+++.
T Consensus 169 ~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~ 246 (408)
T COG0593 169 KFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDD 246 (408)
T ss_pred HHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCH
Confidence 455555 3448899999632 111 22222111 11234589999966532 22233456899999999
Q ss_pred HhHHHHHHHhhccCC
Q 045618 154 REALELFCNCAFKEN 168 (349)
Q Consensus 154 ~ea~~L~~~~a~~~~ 168 (349)
+....++.+.+-...
T Consensus 247 e~r~aiL~kka~~~~ 261 (408)
T COG0593 247 ETRLAILRKKAEDRG 261 (408)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998764433
No 116
>PRK08181 transposase; Validated
Probab=94.14 E-value=0.14 Score=45.85 Aligned_cols=16 Identities=13% Similarity=-0.164 Sum_probs=12.8
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|.|||.||...
T Consensus 111 l~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 111 LFGPPGGGKSHLAAAI 126 (269)
T ss_pred EEecCCCcHHHHHHHH
Confidence 5677899999998743
No 117
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.39 Score=46.48 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=62.0
Q ss_pred HHHHHhCCCceEEEEecCCCchhHHHHHc---------------ccCCCCCCcEEEEEeCcchhhcccC----cccEEEc
Q 045618 88 YVRERLRRTKVLIVLDDVNKVGQLEYLIG---------------GLERFGPGSRIIVTTRDRRVLDNFG----VGNIYKV 148 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~~~~~~l~~---------------~~~~~~~~~~IlvTTR~~~~~~~~~----~~~~~~l 148 (349)
...+.-+..-..||+||++..-+|-.+.| ..++.+..--|+-||....+...++ ....+++
T Consensus 590 ~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred HHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 34444555678899999976544433222 2344444555777888888877664 3457999
Q ss_pred CCCCh-HhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHh
Q 045618 149 NGLKY-REALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFL 199 (349)
Q Consensus 149 ~~L~~-~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l 199 (349)
+.++. ++..+.++..- .-.+...+..+.+...+| +-..|+.+-..+
T Consensus 670 pnl~~~~~~~~vl~~~n---~fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEELN---IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred CccCchHHHHHHHHHcc---CCCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 99987 66677766543 112233445555665555 333344444333
No 118
>PRK09183 transposase/IS protein; Provisional
Probab=93.72 E-value=0.17 Score=45.20 Aligned_cols=16 Identities=13% Similarity=0.164 Sum_probs=12.9
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|.|||+||...
T Consensus 107 l~Gp~GtGKThLa~al 122 (259)
T PRK09183 107 LLGPSGVGKTHLAIAL 122 (259)
T ss_pred EEeCCCCCHHHHHHHH
Confidence 4577899999999843
No 119
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.39 E-value=0.25 Score=48.25 Aligned_cols=95 Identities=14% Similarity=0.075 Sum_probs=52.7
Q ss_pred CCCceEEEEecCCCch--------------hHHHHHcccCCCCCCcEEEEEeCcchhhcc-c----CcccEEEcCCCChH
Q 045618 94 RRTKVLIVLDDVNKVG--------------QLEYLIGGLERFGPGSRIIVTTRDRRVLDN-F----GVGNIYKVNGLKYR 154 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~-~----~~~~~~~l~~L~~~ 154 (349)
...+++|++|+++... .+..++..+.....+.-||.||.+.+.... + .....+.++..+.+
T Consensus 316 ~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 316 ALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred hcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 3478999999996320 122233322222344556667766543221 1 23457889999999
Q ss_pred hHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCc
Q 045618 155 EALELFCNCAFKENHCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 155 ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glP 189 (349)
+-.++|..+..+...... .......+++.+.|.-
T Consensus 396 eR~~Il~~~l~~~~~~~~-~~~dl~~La~~T~GfS 429 (489)
T CHL00195 396 EREKIFKIHLQKFRPKSW-KKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHHHhhcCCCcc-cccCHHHHHhhcCCCC
Confidence 999999887744221110 0112346666666654
No 120
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.26 E-value=0.29 Score=50.51 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=39.2
Q ss_pred CCceEEEEecCCCc-----------hhHHHHHcccCCCCCCcEEEEEeCcchhhc------cc-CcccEEEcCCCChHhH
Q 045618 95 RTKVLIVLDDVNKV-----------GQLEYLIGGLERFGPGSRIIVTTRDRRVLD------NF-GVGNIYKVNGLKYREA 156 (349)
Q Consensus 95 ~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~------~~-~~~~~~~l~~L~~~ea 156 (349)
.++++|++|+++.. +.-+.+.+.+.. + .-++|-+|..+.... .+ .--..+.+++++.++.
T Consensus 273 ~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~ 350 (731)
T TIGR02639 273 EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEET 350 (731)
T ss_pred cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHH
Confidence 45789999999722 112334444431 2 234444444322111 11 1124789999999999
Q ss_pred HHHHHHhh
Q 045618 157 LELFCNCA 164 (349)
Q Consensus 157 ~~L~~~~a 164 (349)
.+++....
T Consensus 351 ~~il~~~~ 358 (731)
T TIGR02639 351 VKILKGLK 358 (731)
T ss_pred HHHHHHHH
Confidence 99998654
No 121
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=0.84 Score=45.86 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=76.5
Q ss_pred cCCCCCchhhHHHHHHhhhhcceee-ccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhC
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECL-SEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPEYVRERLR 94 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~-~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~ 94 (349)
..|+.|.|||.||+..|+....-.. ...| ..+...+.. ...++|+.+-. -..+.+.
T Consensus 436 l~G~~GsGKT~L~kal~~~~~k~~~~hv~~-----v~Cs~l~~~---~~e~iQk~l~~---------------vfse~~~ 492 (952)
T KOG0735|consen 436 LNGPKGSGKTNLVKALFDYYSKDLIAHVEI-----VSCSTLDGS---SLEKIQKFLNN---------------VFSEALW 492 (952)
T ss_pred EeCCCCCCHhHHHHHHHHHhccccceEEEE-----Eechhccch---hHHHHHHHHHH---------------HHHHHHh
Confidence 4566899999999988775442100 0011 111111111 23333333221 3556677
Q ss_pred CCceEEEEecCCCc--------hh-------HHHHH----cccCCCCCCcEEEEEeCcchhhcc-c----CcccEEEcCC
Q 045618 95 RTKVLIVLDDVNKV--------GQ-------LEYLI----GGLERFGPGSRIIVTTRDRRVLDN-F----GVGNIYKVNG 150 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--------~~-------~~~l~----~~~~~~~~~~~IlvTTR~~~~~~~-~----~~~~~~~l~~ 150 (349)
....++||||++.. .+ +..++ ..+...+..-.+|.|......... + -......++.
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 78999999999621 11 11111 111111222244555544332211 1 1234688899
Q ss_pred CChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCC-CchHHHHH
Q 045618 151 LKYREALELFCNCAFKENHCPEDLLVHSKRILDYANG-NPLAVRVL 195 (349)
Q Consensus 151 L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~g-lPLAl~~~ 195 (349)
+...+-.++++... ...... .......-+..+|+| .|..+.+.
T Consensus 573 p~~~~R~~IL~~~~-s~~~~~-~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 573 PAVTRRKEILTTIF-SKNLSD-ITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred cchhHHHHHHHHHH-Hhhhhh-hhhHHHHHHHHhcCCccchhHHHH
Confidence 99888888887664 222211 122233347777776 45555443
No 122
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.83 E-value=2.4 Score=37.35 Aligned_cols=171 Identities=13% Similarity=0.056 Sum_probs=89.5
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHH----HHHH
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPE----YVRE 91 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~----~l~~ 91 (349)
..|..|-|||.+.+ +-....- +. ....++-.....+...+...+..++...+.......-+ .+..
T Consensus 56 vtGevGsGKTv~~R-al~~s~~----~d------~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 56 VTGEVGSGKTVLRR-ALLASLN----ED------QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred EEecCCCchhHHHH-HHHHhcC----CC------ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 34557999999988 2211110 00 00111222333466667777777775533333333322 4444
Q ss_pred Hh-CCCc-eEEEEecCCCch--hHHHH---HcccCCCCCCcEEEEEeCcch-------hhcccC-cccE-EEcCCCChHh
Q 045618 92 RL-RRTK-VLIVLDDVNKVG--QLEYL---IGGLERFGPGSRIIVTTRDRR-------VLDNFG-VGNI-YKVNGLKYRE 155 (349)
Q Consensus 92 ~L-~~~~-~LlVlDdv~~~~--~~~~l---~~~~~~~~~~~~IlvTTR~~~-------~~~~~~-~~~~-~~l~~L~~~e 155 (349)
.. ++++ ..++.|++++.. ..+.+ ...-..++.--+|+..-..+- +....+ -..+ |+++|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 43 3566 899999998542 23322 222111122222333322111 011111 1123 8999999998
Q ss_pred HHHHHHHhhccCCCCCh-hHHHHHHHHHHHcCCCchHHHHHhH
Q 045618 156 ALELFCNCAFKENHCPE-DLLVHSKRILDYANGNPLAVRVLGS 197 (349)
Q Consensus 156 a~~L~~~~a~~~~~~~~-~~~~~~~~i~~~c~glPLAl~~~a~ 197 (349)
....++....+...+.+ -..+....|.....|.|.+|..++.
T Consensus 205 t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 88777776644332221 2245567888899999999988764
No 123
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=0.33 Score=49.55 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=23.7
Q ss_pred HHHHHhCCCce-EEEEecCC--CchhHHHHHcccC
Q 045618 88 YVRERLRRTKV-LIVLDDVN--KVGQLEYLIGGLE 119 (349)
Q Consensus 88 ~l~~~L~~~~~-LlVlDdv~--~~~~~~~l~~~~~ 119 (349)
.|-+.++.+.| ++.||.++ +++.++-|+..+.
T Consensus 584 ~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 584 QLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred chhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 67788888866 88899998 4566666666553
No 124
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.78 E-value=0.39 Score=44.54 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=47.1
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHh
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNC 163 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~ 163 (349)
+.+-++|+|+++.. +..+.|+..+.+-.+++.+|.+|.++. +...+ .-...+++.+++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 45567999999854 345667666665566777777776543 33333 23458999999999998888653
No 125
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=92.63 E-value=0.2 Score=46.50 Aligned_cols=129 Identities=13% Similarity=0.107 Sum_probs=72.1
Q ss_pred CCCchhhHHHHHHhhhh----cceeeccccccccccCcceeehhhhccHHHHHHHHHHHhh--cccCCCCCCHHH-----
Q 045618 19 SCGIVKIRRCLMVFRLC----STECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLV--EQEQIRTPNLPE----- 87 (349)
Q Consensus 19 ~gGiGKT~la~~~f~~~----~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~--~~~~~~~~~~~~----- 87 (349)
-.|-|||.++++.|+.. .|++.-+-| +...++.+|+.+.. .......+...+
T Consensus 38 ~sgTGKT~~~r~~l~~~n~~~vw~n~~ecf-----------------t~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~ 100 (438)
T KOG2543|consen 38 HSGTGKTYLVRQLLRKLNLENVWLNCVECF-----------------TYAILLEKILNKSQLADKDGDKVEGDAENFSDF 100 (438)
T ss_pred cCCCchhHHHHHHHhhcCCcceeeehHHhc-----------------cHHHHHHHHHHHhccCCCchhhhhhHHHHHHHH
Confidence 36999999999988754 466555555 88888899998873 212222222112
Q ss_pred --HHHH--HhC--CCceEEEEecCCCchhHHHH-----HcccCCCCCCcEEEEEeCcchh---hcccCc--ccEEEcCCC
Q 045618 88 --YVRE--RLR--RTKVLIVLDDVNKVGQLEYL-----IGGLERFGPGSRIIVTTRDRRV---LDNFGV--GNIYKVNGL 151 (349)
Q Consensus 88 --~l~~--~L~--~~~~LlVlDdv~~~~~~~~l-----~~~~~~~~~~~~IlvTTR~~~~---~~~~~~--~~~~~l~~L 151 (349)
.+.+ ... ++.++|||||++...+.+.. .....-......+|+++-...- ...++. ..++..+..
T Consensus 101 i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Y 180 (438)
T KOG2543|consen 101 IYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQY 180 (438)
T ss_pred HHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCC
Confidence 2222 122 35899999999865543222 1110000112334444432211 111222 236778889
Q ss_pred ChHhHHHHHHHhh
Q 045618 152 KYREALELFCNCA 164 (349)
Q Consensus 152 ~~~ea~~L~~~~a 164 (349)
+.+|-.+++.+.-
T Consensus 181 s~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 181 SVEETQVILSRDN 193 (438)
T ss_pred CHHHHHHHHhcCC
Confidence 9999888886654
No 126
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.25 E-value=1.2 Score=46.74 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=40.3
Q ss_pred CCceEEEEecCCCch---------hH-HHHHcccCCCCCCcEEEEEeCcchhhcc------c-CcccEEEcCCCChHhHH
Q 045618 95 RTKVLIVLDDVNKVG---------QL-EYLIGGLERFGPGSRIIVTTRDRRVLDN------F-GVGNIYKVNGLKYREAL 157 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~---------~~-~~l~~~~~~~~~~~~IlvTTR~~~~~~~------~-~~~~~~~l~~L~~~ea~ 157 (349)
+.+++|++|+++... +. ..|.|.+. ...-++|-||........ + .-...+.+++++.++..
T Consensus 279 ~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~ 356 (852)
T TIGR03345 279 PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAI 356 (852)
T ss_pred CCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHH
Confidence 468999999996431 22 23445443 223456656654322111 1 12248999999999999
Q ss_pred HHHHHhh
Q 045618 158 ELFCNCA 164 (349)
Q Consensus 158 ~L~~~~a 164 (349)
++++...
T Consensus 357 ~iL~~~~ 363 (852)
T TIGR03345 357 RMLRGLA 363 (852)
T ss_pred HHHHHHH
Confidence 9975443
No 127
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=92.23 E-value=0.28 Score=47.14 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=53.0
Q ss_pred HhCCCceEEEEecCCCc------------h----hHHHHHcccCC--CCCCcEEEEEeCcchhhccc-----CcccEEEc
Q 045618 92 RLRRTKVLIVLDDVNKV------------G----QLEYLIGGLER--FGPGSRIIVTTRDRRVLDNF-----GVGNIYKV 148 (349)
Q Consensus 92 ~L~~~~~LlVlDdv~~~------------~----~~~~l~~~~~~--~~~~~~IlvTTR~~~~~~~~-----~~~~~~~l 148 (349)
...+.+++|+||+++.. . .+..++..+.. ...+..||.||...+..... .....+++
T Consensus 272 A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~ 351 (438)
T PTZ00361 272 AEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEF 351 (438)
T ss_pred HHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEe
Confidence 33456789999997521 0 11222222211 13356788888765543321 12457899
Q ss_pred CCCChHhHHHHHHHhhccCCC-CChhHHHHHHHHHHHcCCCc
Q 045618 149 NGLKYREALELFCNCAFKENH-CPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 149 ~~L~~~ea~~L~~~~a~~~~~-~~~~~~~~~~~i~~~c~glP 189 (349)
+..+.++..++|..+...... .... ...++..+.|+-
T Consensus 352 ~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 352 PNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 999999999999977633221 1112 345566666554
No 128
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.86 E-value=1.3 Score=45.84 Aligned_cols=95 Identities=14% Similarity=0.174 Sum_probs=54.1
Q ss_pred HhCCCceEEEEecCCCc--------------hhHHHHHcccCC--CCCCcEEEEEeCcchhhccc-----CcccEEEcCC
Q 045618 92 RLRRTKVLIVLDDVNKV--------------GQLEYLIGGLER--FGPGSRIIVTTRDRRVLDNF-----GVGNIYKVNG 150 (349)
Q Consensus 92 ~L~~~~~LlVlDdv~~~--------------~~~~~l~~~~~~--~~~~~~IlvTTR~~~~~~~~-----~~~~~~~l~~ 150 (349)
.-....++|++|+++.. ..+..++..+.. ...+..||.||..++..... .....+.++.
T Consensus 542 A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~ 621 (733)
T TIGR01243 542 ARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPP 621 (733)
T ss_pred HHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCC
Confidence 33456799999998531 123334333321 12355666677665543221 2345788999
Q ss_pred CChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCc
Q 045618 151 LKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 151 L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glP 189 (349)
.+.++-.++|+....+..... . .....+++.+.|.-
T Consensus 622 Pd~~~R~~i~~~~~~~~~~~~-~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 622 PDEEARKEIFKIHTRSMPLAE-D--VDLEELAEMTEGYT 657 (733)
T ss_pred cCHHHHHHHHHHHhcCCCCCc-c--CCHHHHHHHcCCCC
Confidence 999999999987653222111 1 11346777777754
No 129
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.70 E-value=1.4 Score=45.63 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=19.0
Q ss_pred HHHHHhCC-CceEEEEecCCC--chhHHHHHccc
Q 045618 88 YVRERLRR-TKVLIVLDDVNK--VGQLEYLIGGL 118 (349)
Q Consensus 88 ~l~~~L~~-~~~LlVlDdv~~--~~~~~~l~~~~ 118 (349)
.+.+.++. ...+++||+++. .+.+..|+..+
T Consensus 544 ~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~l 577 (731)
T TIGR02639 544 LLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVM 577 (731)
T ss_pred HHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhh
Confidence 34445444 456999999984 34455555544
No 130
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.31 E-value=0.84 Score=35.32 Aligned_cols=16 Identities=13% Similarity=-0.101 Sum_probs=13.1
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+-|.|||+++...
T Consensus 7 l~G~~G~GKTtl~~~l 22 (148)
T smart00382 7 IVGPPGSGKTTLARAL 22 (148)
T ss_pred EECCCCCcHHHHHHHH
Confidence 4678899999999843
No 131
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.05 E-value=0.67 Score=48.57 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=37.7
Q ss_pred CCceEEEEecCCCc---------hhH-HHHHcccCCCCCCcEEEEEeCcchhhc------cc-CcccEEEcCCCChHhHH
Q 045618 95 RTKVLIVLDDVNKV---------GQL-EYLIGGLERFGPGSRIIVTTRDRRVLD------NF-GVGNIYKVNGLKYREAL 157 (349)
Q Consensus 95 ~~~~LlVlDdv~~~---------~~~-~~l~~~~~~~~~~~~IlvTTR~~~~~~------~~-~~~~~~~l~~L~~~ea~ 157 (349)
.++.+|++|+++.. .+. .-|.+.+. ...-++|-+|....... .+ .....+.+++.+.++..
T Consensus 270 ~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~ 347 (821)
T CHL00095 270 NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETI 347 (821)
T ss_pred cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHH
Confidence 46899999999621 122 33334432 12345555555443211 11 12346788889999888
Q ss_pred HHHHHh
Q 045618 158 ELFCNC 163 (349)
Q Consensus 158 ~L~~~~ 163 (349)
.+++..
T Consensus 348 aILr~l 353 (821)
T CHL00095 348 EILFGL 353 (821)
T ss_pred HHHHHH
Confidence 887643
No 132
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.03 E-value=0.17 Score=42.45 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=12.6
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|.|||.||...
T Consensus 52 l~G~~G~GKThLa~ai 67 (178)
T PF01695_consen 52 LYGPPGTGKTHLAVAI 67 (178)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EEhhHhHHHHHHHHHH
Confidence 4566899999998744
No 133
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=90.72 E-value=0.67 Score=41.25 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=12.5
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|+|||-||...
T Consensus 110 l~G~~G~GKThLa~Ai 125 (254)
T COG1484 110 LLGPPGVGKTHLAIAI 125 (254)
T ss_pred EECCCCCcHHHHHHHH
Confidence 4566799999998743
No 134
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.60 E-value=0.81 Score=48.15 Aligned_cols=17 Identities=12% Similarity=-0.021 Sum_probs=13.4
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..||.|+|||.+|+...
T Consensus 600 f~Gp~GvGKt~lA~~La 616 (852)
T TIGR03346 600 FLGPTGVGKTELAKALA 616 (852)
T ss_pred EEcCCCCCHHHHHHHHH
Confidence 46778999999998443
No 135
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.37 E-value=0.97 Score=46.68 Aligned_cols=68 Identities=10% Similarity=0.130 Sum_probs=39.1
Q ss_pred CCceEEEEecCCCc----------hhHH-HHHcccCCCCCCcEEEEEeCcchhhcc------c-CcccEEEcCCCChHhH
Q 045618 95 RTKVLIVLDDVNKV----------GQLE-YLIGGLERFGPGSRIIVTTRDRRVLDN------F-GVGNIYKVNGLKYREA 156 (349)
Q Consensus 95 ~~~~LlVlDdv~~~----------~~~~-~l~~~~~~~~~~~~IlvTTR~~~~~~~------~-~~~~~~~l~~L~~~ea 156 (349)
..+.+|++|+++.. .+.. .+.+.+. ...-++|-+|..+..... + .--..+.+++++.++.
T Consensus 277 ~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~ 354 (758)
T PRK11034 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEET 354 (758)
T ss_pred cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHH
Confidence 46789999999732 1222 2334332 123445545544332111 1 1124799999999999
Q ss_pred HHHHHHhh
Q 045618 157 LELFCNCA 164 (349)
Q Consensus 157 ~~L~~~~a 164 (349)
.+++....
T Consensus 355 ~~IL~~~~ 362 (758)
T PRK11034 355 VQIINGLK 362 (758)
T ss_pred HHHHHHHH
Confidence 99998653
No 136
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.22 E-value=6.1 Score=35.25 Aligned_cols=17 Identities=18% Similarity=0.061 Sum_probs=13.2
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|.|||++|+...
T Consensus 26 L~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 26 LRGPAGTGKTTLAMHVA 42 (262)
T ss_pred EEcCCCCCHHHHHHHHH
Confidence 35678999999998543
No 137
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.18 E-value=0.066 Score=42.67 Aligned_cols=18 Identities=17% Similarity=-0.027 Sum_probs=14.3
Q ss_pred CCCCCchhhHHHHHHhhh
Q 045618 17 ATSCGIVKIRRCLMVFRL 34 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~~ 34 (349)
.|+-|+|||++|+.....
T Consensus 5 ~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 5 VGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EESSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 577899999999965544
No 138
>PRK07952 DNA replication protein DnaC; Validated
Probab=89.64 E-value=1 Score=39.76 Aligned_cols=16 Identities=13% Similarity=-0.060 Sum_probs=12.5
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|++|.|||.|+...
T Consensus 104 l~G~~GtGKThLa~ai 119 (244)
T PRK07952 104 FSGKPGTGKNHLAAAI 119 (244)
T ss_pred EECCCCCCHHHHHHHH
Confidence 4566899999998743
No 139
>PRK12377 putative replication protein; Provisional
Probab=89.62 E-value=1.2 Score=39.47 Aligned_cols=16 Identities=13% Similarity=-0.060 Sum_probs=12.2
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+-|.|||.||...
T Consensus 106 l~G~~GtGKThLa~AI 121 (248)
T PRK12377 106 FSGKPGTGKNHLAAAI 121 (248)
T ss_pred EECCCCCCHHHHHHHH
Confidence 3466799999998744
No 140
>PRK08939 primosomal protein DnaI; Reviewed
Probab=89.58 E-value=1.1 Score=40.95 Aligned_cols=18 Identities=11% Similarity=-0.077 Sum_probs=13.4
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|+|||.|+.....
T Consensus 161 L~G~~G~GKThLa~Aia~ 178 (306)
T PRK08939 161 LYGDFGVGKSYLLAAIAN 178 (306)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456679999999885443
No 141
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=89.54 E-value=2.1 Score=40.15 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=34.9
Q ss_pred CCCcEEEEEeCcchhhcc--cCccc-EEEcCCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCch
Q 045618 122 GPGSRIIVTTRDRRVLDN--FGVGN-IYKVNGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 122 ~~~~~IlvTTR~~~~~~~--~~~~~-~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPL 190 (349)
.++..||+||..++.... ....+ .-.+...+.++-.++++... +..... .....+|++...|-|+
T Consensus 266 ~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~-r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 266 IPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIF-RDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHh-ccCCCC---HHHHHHHHHcCCCCCc
Confidence 456778999977764322 12111 11233456677777777665 222222 2345567777777664
No 142
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.38 E-value=1.6 Score=45.23 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=49.1
Q ss_pred HHhCCCceEEEEecCCCc-------------hhHHHHHcccCCC-CCCcEEEE-EeCcchhh-ccc----CcccEEEcCC
Q 045618 91 ERLRRTKVLIVLDDVNKV-------------GQLEYLIGGLERF-GPGSRIIV-TTRDRRVL-DNF----GVGNIYKVNG 150 (349)
Q Consensus 91 ~~L~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~-~~~~~Ilv-TTR~~~~~-~~~----~~~~~~~l~~ 150 (349)
........+|+||+++.. .....|...+... ..+..++| ||...... ..+ .....+.++.
T Consensus 266 ~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~ 345 (733)
T TIGR01243 266 EAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRV 345 (733)
T ss_pred HHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCC
Confidence 334456789999998532 1123333333211 22334444 44433211 111 1234678888
Q ss_pred CChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCc
Q 045618 151 LKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 151 L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glP 189 (349)
.+.++-.+++....-..... . ......+++.+.|.-
T Consensus 346 P~~~~R~~Il~~~~~~~~l~-~--d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 346 PDKRARKEILKVHTRNMPLA-E--DVDLDKLAEVTHGFV 381 (733)
T ss_pred cCHHHHHHHHHHHhcCCCCc-c--ccCHHHHHHhCCCCC
Confidence 88888888888654221111 1 112456777777764
No 143
>PRK08118 topology modulation protein; Reviewed
Probab=89.33 E-value=0.78 Score=37.97 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=20.9
Q ss_pred cCCCCCchhhHHHHHHhhhh--cceeecccccc
Q 045618 16 RATSCGIVKIRRCLMVFRLC--STECLSEALWK 46 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~--~w~~~~~~f~~ 46 (349)
..|++|.||||+|+...... -.++++.-+|.
T Consensus 6 I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 6 LIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 56889999999999655432 23455555653
No 144
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.30 E-value=2.9 Score=44.08 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=13.9
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..||-|.|||++|+....
T Consensus 603 f~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 603 FLGPTGVGKTELCKALAN 620 (857)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 557789999999985443
No 145
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.96 E-value=0.97 Score=47.38 Aligned_cols=32 Identities=19% Similarity=0.441 Sum_probs=20.1
Q ss_pred HHHHHhCCCc-eEEEEecCCC--chhHHHHHcccC
Q 045618 88 YVRERLRRTK-VLIVLDDVNK--VGQLEYLIGGLE 119 (349)
Q Consensus 88 ~l~~~L~~~~-~LlVlDdv~~--~~~~~~l~~~~~ 119 (349)
.+.+.++.++ .+++||+++. .+.++.|+..+.
T Consensus 602 ~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 602 QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 4555555554 6899999984 444555555543
No 146
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=88.78 E-value=3.5 Score=36.19 Aligned_cols=15 Identities=20% Similarity=0.062 Sum_probs=12.7
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
.++++|.|||+|+..
T Consensus 6 l~g~~G~GKS~lal~ 20 (239)
T cd01125 6 LVAPGGTGKSSLLLV 20 (239)
T ss_pred EEcCCCCCHHHHHHH
Confidence 467899999999873
No 147
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=88.72 E-value=0.85 Score=42.80 Aligned_cols=46 Identities=24% Similarity=0.417 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCceEEEEecCC--Cchh---HHHHHcccCCCCCCcEEEEEeCcc
Q 045618 86 PEYVRERLRRTKVLIVLDDVN--KVGQ---LEYLIGGLERFGPGSRIIVTTRDR 134 (349)
Q Consensus 86 ~~~l~~~L~~~~~LlVlDdv~--~~~~---~~~l~~~~~~~~~~~~IlvTTR~~ 134 (349)
-..+.+.+.++..||+||.+. |..+ +..|+..+. ..| .|||+|.|.
T Consensus 117 l~~va~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~g-vvlVaTSN~ 167 (362)
T PF03969_consen 117 LPQVADELAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRG-VVLVATSNR 167 (362)
T ss_pred HHHHHHHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCC-CEEEecCCC
Confidence 345677888888899999875 4433 455555443 234 466666654
No 148
>PRK10865 protein disaggregation chaperone; Provisional
Probab=88.68 E-value=1.8 Score=45.62 Aligned_cols=68 Identities=9% Similarity=0.034 Sum_probs=38.8
Q ss_pred CCceEEEEecCCCch---------h-HHHHHcccCCCCCCcEEEEEeCcchhhcc------c-CcccEEEcCCCChHhHH
Q 045618 95 RTKVLIVLDDVNKVG---------Q-LEYLIGGLERFGPGSRIIVTTRDRRVLDN------F-GVGNIYKVNGLKYREAL 157 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~---------~-~~~l~~~~~~~~~~~~IlvTTR~~~~~~~------~-~~~~~~~l~~L~~~ea~ 157 (349)
+.+++|++|+++... + -+-|.|.+. ...-++|-+|........ + .--..+.++..+.++..
T Consensus 270 ~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~ 347 (857)
T PRK10865 270 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTI 347 (857)
T ss_pred CCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHH
Confidence 468999999997432 2 233444442 223455555554432111 1 11225778888999999
Q ss_pred HHHHHhh
Q 045618 158 ELFCNCA 164 (349)
Q Consensus 158 ~L~~~~a 164 (349)
.+++...
T Consensus 348 ~iL~~l~ 354 (857)
T PRK10865 348 AILRGLK 354 (857)
T ss_pred HHHHHHh
Confidence 9887654
No 149
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=6.6 Score=36.48 Aligned_cols=160 Identities=17% Similarity=0.165 Sum_probs=88.4
Q ss_pred hHHhhcccCCC--------CCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCC
Q 045618 9 DLLAELNRATS--------CGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQI 80 (349)
Q Consensus 9 d~~~~~~~~~~--------gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~ 80 (349)
+....++.-+| =|-|||-||+.+... ++..|+++..+ ++.++..|...
T Consensus 175 ElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~---------------T~AtFIrvvgS--------ElVqKYiGEGa- 230 (406)
T COG1222 175 ELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ---------------TDATFIRVVGS--------ELVQKYIGEGA- 230 (406)
T ss_pred HHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc---------------cCceEEEeccH--------HHHHHHhccch-
Confidence 45555665555 489999999966543 22344666533 13333333111
Q ss_pred CCCCHHHHHHHHhCC-CceEEEEecCCCc------------hh----HHHHHcccCCC--CCCcEEEEEeCcchhhccc-
Q 045618 81 RTPNLPEYVRERLRR-TKVLIVLDDVNKV------------GQ----LEYLIGGLERF--GPGSRIIVTTRDRRVLDNF- 140 (349)
Q Consensus 81 ~~~~~~~~l~~~L~~-~~~LlVlDdv~~~------------~~----~~~l~~~~~~~--~~~~~IlvTTR~~~~~~~~- 140 (349)
.+-..+++.-+. ..+.|.+|.++.. .. +-.|+..+.-+ ..+.|||..|...++....
T Consensus 231 ---RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPAL 307 (406)
T COG1222 231 ---RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPAL 307 (406)
T ss_pred ---HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhh
Confidence 122234444444 5899999998521 11 22333443322 3467899888877765432
Q ss_pred -C---cccEEEcCCCChHhHHHHHHHhhccCC-CCChhHHHHHHHHHHHcCCCc----hHHHHHhHHh
Q 045618 141 -G---VGNIYKVNGLKYREALELFCNCAFKEN-HCPEDLLVHSKRILDYANGNP----LAVRVLGSFL 199 (349)
Q Consensus 141 -~---~~~~~~l~~L~~~ea~~L~~~~a~~~~-~~~~~~~~~~~~i~~~c~glP----LAl~~~a~~l 199 (349)
. ..+.++++..+.+.-.++|+-++..-+ ...-+ .+.|++.|.|.- -|+..=|+++
T Consensus 308 LRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 308 LRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred cCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHHHHHHHhHH
Confidence 2 345788887777777788887773322 12223 346777777765 3344444444
No 150
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=88.45 E-value=1.7 Score=35.75 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=35.0
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLK 152 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~ 152 (349)
++.=++|+||++.. +....|+..+.....++.+|++|++.. +...+ .-...+.+++++
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 35668999999854 456777766665577888888888765 33333 223466666654
No 151
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=88.40 E-value=3.6 Score=41.91 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=45.2
Q ss_pred HHHHhCCCceEEEEecCCCch----------------hHHHHHcccCCC--CCCcEEEEEeCcchhhccc-----CcccE
Q 045618 89 VRERLRRTKVLIVLDDVNKVG----------------QLEYLIGGLERF--GPGSRIIVTTRDRRVLDNF-----GVGNI 145 (349)
Q Consensus 89 l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~~IlvTTR~~~~~~~~-----~~~~~ 145 (349)
+........++|++|+++... .+..++..+... ..+..+|.||..++..... .....
T Consensus 237 f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~ 316 (644)
T PRK10733 237 FEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQ 316 (644)
T ss_pred HHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceE
Confidence 333344567899999996431 123333222211 2344556677666543321 13457
Q ss_pred EEcCCCChHhHHHHHHHhhcc
Q 045618 146 YKVNGLKYREALELFCNCAFK 166 (349)
Q Consensus 146 ~~l~~L~~~ea~~L~~~~a~~ 166 (349)
+.++..+.++-.+++..+...
T Consensus 317 i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 317 VVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred EEcCCCCHHHHHHHHHHHhhc
Confidence 888888988888888887633
No 152
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.79 E-value=0.95 Score=47.51 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=23.5
Q ss_pred CCceEEEEecCCC--chhHHHHHcccCCCC-----------CCcEEEEEeCc
Q 045618 95 RTKVLIVLDDVNK--VGQLEYLIGGLERFG-----------PGSRIIVTTRD 133 (349)
Q Consensus 95 ~~~~LlVlDdv~~--~~~~~~l~~~~~~~~-----------~~~~IlvTTR~ 133 (349)
....+|+||+++. ...++.|...+..+. .++.||+||..
T Consensus 667 ~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 667 KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 4568999999973 344555554443221 34566666654
No 153
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=87.37 E-value=3.3 Score=43.16 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.2
Q ss_pred cEEEcCCCChHhHHHHHHHhh
Q 045618 144 NIYKVNGLKYREALELFCNCA 164 (349)
Q Consensus 144 ~~~~l~~L~~~ea~~L~~~~a 164 (349)
..+++++++.++-.+++..+.
T Consensus 485 ~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 485 EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred eEEecCCCCHHHHHHHHHHHH
Confidence 478999999998888887654
No 154
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=87.33 E-value=1.5 Score=45.40 Aligned_cols=112 Identities=12% Similarity=0.099 Sum_probs=58.6
Q ss_pred CCceEEEEecCCC---chhHH----HHHcccCCCCCCcEEEEEeCcchhhccc-CcccEEEcCCCChH-hHHHHHHHhhc
Q 045618 95 RTKVLIVLDDVNK---VGQLE----YLIGGLERFGPGSRIIVTTRDRRVLDNF-GVGNIYKVNGLKYR-EALELFCNCAF 165 (349)
Q Consensus 95 ~~~~LlVlDdv~~---~~~~~----~l~~~~~~~~~~~~IlvTTR~~~~~~~~-~~~~~~~l~~L~~~-ea~~L~~~~a~ 165 (349)
..+.|+++|..-. +..-. .++..+. ..|+.+|+||....+.... ....+.. ..+..+ +... +.....
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~-~~~~~d~~~l~-p~Ykl~ 476 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVEN-ASVLFDEETLS-PTYKLL 476 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEE-eEEEEcCCCCc-eEEEEC
Confidence 4789999999863 22222 2233332 3578899999987764322 1111111 111111 1111 111111
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhccCCHHHHHHHHHHhh
Q 045618 166 KENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQKSKLDWESALDNLK 215 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~~~~~~~~~l~~l~ 215 (349)
.+ .+. ...|-+|++++ |+|-.|.--|..+......++.++++.|.
T Consensus 477 ~G-~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 477 KG-IPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred CC-CCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 111 24577788776 78888888887776654556666666654
No 155
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=86.67 E-value=2.1 Score=41.49 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=30.9
Q ss_pred HHHHHhCCCceEEEEecCCCc----h---hHHHHHcccCCCCCCcEEEEEeCcchhhcc
Q 045618 88 YVRERLRRTKVLIVLDDVNKV----G---QLEYLIGGLERFGPGSRIIVTTRDRRVLDN 139 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~----~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~ 139 (349)
-|.+.+-+..+|+|||.-... . -.+.+... ...|+.+|+.|..+.+...
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~---k~rG~~vvviaHRPs~L~~ 537 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA---KARGGTVVVIAHRPSALAS 537 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHH---HHcCCEEEEEecCHHHHhh
Confidence 788999999999999987521 1 12233222 1356666666666655544
No 156
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=86.66 E-value=2.6 Score=43.80 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=39.5
Q ss_pred CceEEEEecCCCchh------HHHHHcccCCC---------------CCCcEEEEEeCcchhhccc-CcccEEEcCCCCh
Q 045618 96 TKVLIVLDDVNKVGQ------LEYLIGGLERF---------------GPGSRIIVTTRDRRVLDNF-GVGNIYKVNGLKY 153 (349)
Q Consensus 96 ~~~LlVlDdv~~~~~------~~~l~~~~~~~---------------~~~~~IlvTTR~~~~~~~~-~~~~~~~l~~L~~ 153 (349)
.+-+++||.++.... ...|...+... -++..+|.|+..-.+...+ .-..++++.+++.
T Consensus 416 ~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~ 495 (784)
T PRK10787 416 KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTE 495 (784)
T ss_pred CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCH
Confidence 455789999974321 24444433211 1344455555443322221 2234789999999
Q ss_pred HhHHHHHHHhhc
Q 045618 154 REALELFCNCAF 165 (349)
Q Consensus 154 ~ea~~L~~~~a~ 165 (349)
+|-.++.+++..
T Consensus 496 eek~~Ia~~~L~ 507 (784)
T PRK10787 496 DEKLNIAKRHLL 507 (784)
T ss_pred HHHHHHHHHhhh
Confidence 998888777663
No 157
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=86.14 E-value=2.7 Score=37.01 Aligned_cols=17 Identities=12% Similarity=-0.060 Sum_probs=13.6
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|-|||+++...+
T Consensus 18 iIG~sGSGKT~li~~lL 34 (241)
T PF04665_consen 18 IIGKSGSGKTTLIKSLL 34 (241)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56778999999988444
No 158
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.06 E-value=5.2 Score=40.48 Aligned_cols=71 Identities=10% Similarity=0.119 Sum_probs=38.3
Q ss_pred CCCceEEEEecCCCc-----hhHHHHHc-ccCCCCCCcEEEEEeCcch--------hhc-------cc---CcccEEEcC
Q 045618 94 RRTKVLIVLDDVNKV-----GQLEYLIG-GLERFGPGSRIIVTTRDRR--------VLD-------NF---GVGNIYKVN 149 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~-----~~~~~l~~-~~~~~~~~~~IlvTTR~~~--------~~~-------~~---~~~~~~~l~ 149 (349)
.+++.+|++|++... ..+..++. .....+.-.-|++||-+.. ... .+ .....+.+.
T Consensus 193 ~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~Fn 272 (637)
T TIGR00602 193 MTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFN 272 (637)
T ss_pred CCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeC
Confidence 357789999999432 23444444 2222233344555552211 000 11 012358899
Q ss_pred CCChHhHHHHHHHhh
Q 045618 150 GLKYREALELFCNCA 164 (349)
Q Consensus 150 ~L~~~ea~~L~~~~a 164 (349)
|++..+-.+.+...+
T Consensus 273 Pia~t~l~K~L~rIl 287 (637)
T TIGR00602 273 PIAPTIMKKFLNRIV 287 (637)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999777666655
No 159
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=86.01 E-value=4.3 Score=33.90 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=33.3
Q ss_pred HHHHHhCCC--ceEEEEecCCC---chhHHHHHcccCC-CCCCcEEEEEeCcchhhcccCcccEEEc
Q 045618 88 YVRERLRRT--KVLIVLDDVNK---VGQLEYLIGGLER-FGPGSRIIVTTRDRRVLDNFGVGNIYKV 148 (349)
Q Consensus 88 ~l~~~L~~~--~~LlVlDdv~~---~~~~~~l~~~~~~-~~~~~~IlvTTR~~~~~~~~~~~~~~~l 148 (349)
.+...+..+ .-++++|..-. ....+.+...+.. ...+..||++|.+.+.... ...++.+
T Consensus 97 ~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 97 KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 556666667 78889999853 2223333222211 1246778888888765432 3444544
No 160
>PRK06921 hypothetical protein; Provisional
Probab=85.75 E-value=1.7 Score=39.00 Aligned_cols=16 Identities=13% Similarity=-0.170 Sum_probs=12.2
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+-|.|||.|+...
T Consensus 122 l~G~~G~GKThLa~ai 137 (266)
T PRK06921 122 LLGQPGSGKTHLLTAA 137 (266)
T ss_pred EECCCCCcHHHHHHHH
Confidence 4456799999998743
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.48 E-value=2.7 Score=44.25 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=38.5
Q ss_pred CCceEEEEecCCCch----------hHHHHHcccCCCCCCcEEEEEeCcchhhcc------c-CcccEEEcCCCChHhHH
Q 045618 95 RTKVLIVLDDVNKVG----------QLEYLIGGLERFGPGSRIIVTTRDRRVLDN------F-GVGNIYKVNGLKYREAL 157 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~------~-~~~~~~~l~~L~~~ea~ 157 (349)
+++.+|++|+++... ..+.|.+.+ ..+ .-++|-+|.....-.. + .--..+.++..+.++..
T Consensus 265 ~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l-~~g-~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~ 342 (852)
T TIGR03346 265 EGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL-ARG-ELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTI 342 (852)
T ss_pred CCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh-hcC-ceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHH
Confidence 468999999997331 123333333 222 2344444444332110 1 12236889999999999
Q ss_pred HHHHHhh
Q 045618 158 ELFCNCA 164 (349)
Q Consensus 158 ~L~~~~a 164 (349)
.++....
T Consensus 343 ~iL~~~~ 349 (852)
T TIGR03346 343 SILRGLK 349 (852)
T ss_pred HHHHHHH
Confidence 9887653
No 162
>PRK06835 DNA replication protein DnaC; Validated
Probab=85.47 E-value=1.9 Score=39.95 Aligned_cols=16 Identities=13% Similarity=-0.141 Sum_probs=12.4
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|.|||.||...
T Consensus 188 l~G~~GtGKThLa~aI 203 (329)
T PRK06835 188 FYGNTGTGKTFLSNCI 203 (329)
T ss_pred EECCCCCcHHHHHHHH
Confidence 4566899999998743
No 163
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=84.90 E-value=9.7 Score=34.56 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=43.8
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhcccC-cccEEEcCCCChHhHHHHHHH
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNFG-VGNIYKVNGLKYREALELFCN 162 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~~-~~~~~~l~~L~~~ea~~L~~~ 162 (349)
.+++-++|+|+++.. .....|+..+.+-.+++.+|.+|.++ .+...+. -...+.+++ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 356678999999854 45677777776556667777766655 4555442 234677766 66666666643
No 164
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=84.35 E-value=6.6 Score=36.22 Aligned_cols=139 Identities=18% Similarity=0.096 Sum_probs=73.9
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhh-----hccHHHHHHHHHHHhhcc--cCCCCCCHHHH
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESR-----SIMNQRVSNKFLGWLVEQ--EQIRTPNLPEY 88 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~-----~~~~~~l~~~il~~l~~~--~~~~~~~~~~~ 88 (349)
.+||-|-|||.|.-..... --.+.++| ..++... ...+..+.+++..++... ......+.-++
T Consensus 54 iigprgsgkT~li~~~Ls~--~q~~~E~~--------l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~ 123 (408)
T KOG2228|consen 54 IIGPRGSGKTILIDTRLSD--IQENGENF--------LLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSK 123 (408)
T ss_pred EEccCCCCceEeeHHHHhh--HHhcCCeE--------EEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHH
Confidence 6778899999997643322 11223333 2333322 223444555554444211 11222233335
Q ss_pred HHHHhCC------CceEEEEecCCCc----hh--HHHHHc-ccCCCCCCcEEEEEeCcchh-------hcccCcccEEEc
Q 045618 89 VRERLRR------TKVLIVLDDVNKV----GQ--LEYLIG-GLERFGPGSRIIVTTRDRRV-------LDNFGVGNIYKV 148 (349)
Q Consensus 89 l~~~L~~------~~~LlVlDdv~~~----~~--~~~l~~-~~~~~~~~~~IlvTTR~~~~-------~~~~~~~~~~~l 148 (349)
+...|+. -++.+|+|.++-- .+ +-.+.. .-....|-|.|-+|||-... -..+....++-+
T Consensus 124 lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~ 203 (408)
T KOG2228|consen 124 LLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFML 203 (408)
T ss_pred HHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeecc
Confidence 6566654 3689999888621 11 222222 22334678899999986532 112222235666
Q ss_pred CCCChHhHHHHHHHhh
Q 045618 149 NGLKYREALELFCNCA 164 (349)
Q Consensus 149 ~~L~~~ea~~L~~~~a 164 (349)
++++-++-.+++++..
T Consensus 204 ~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 204 PSLPLGDYVDLYRKLL 219 (408)
T ss_pred CCCChHHHHHHHHHHh
Confidence 7788888888888765
No 165
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=83.77 E-value=7.5 Score=35.37 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=56.8
Q ss_pred eEEEEecCCCc--hhHHHHHcccCCCCCCcE-EEEEeCcchhhcccC-cccEEEcCCCChHhHHHHHHHhhccCCCCChh
Q 045618 98 VLIVLDDVNKV--GQLEYLIGGLERFGPGSR-IIVTTRDRRVLDNFG-VGNIYKVNGLKYREALELFCNCAFKENHCPED 173 (349)
Q Consensus 98 ~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~-IlvTTR~~~~~~~~~-~~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~ 173 (349)
=.+|||+++.. +.|..+..........++ |+||+--..+...+. -..-|..++|..++..+-++..+-.....-
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~-- 208 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI-- 208 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC--
Confidence 37899999854 568888777665455554 555554443333321 223688899999999998888874433322
Q ss_pred HHHHHHHHHHHcCCC
Q 045618 174 LLVHSKRILDYANGN 188 (349)
Q Consensus 174 ~~~~~~~i~~~c~gl 188 (349)
..+....|++.++|-
T Consensus 209 d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 209 DDDALKLIAKISDGD 223 (346)
T ss_pred CHHHHHHHHHHcCCc
Confidence 234566777777663
No 166
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=83.20 E-value=2.8 Score=39.52 Aligned_cols=83 Identities=13% Similarity=0.032 Sum_probs=41.5
Q ss_pred cccCCCCCchhh-HHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHH--HHH
Q 045618 14 LNRATSCGIVKI-RRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPE--YVR 90 (349)
Q Consensus 14 ~~~~~~gGiGKT-~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~--~l~ 90 (349)
...+||-|+||| |||+.++....- .... .+.+++.-....-..=|-++..++.+-+-.-..+..+ .-.
T Consensus 206 i~LVGPTGVGKTTTlAKLAar~~~~---~~~~------kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 206 IALVGPTGVGKTTTLAKLAARYVML---KKKK------KVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhh---ccCc------ceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 346788999995 567766544310 1111 2222332222222333455666666666555555555 333
Q ss_pred HHhCCCceEEEEecCC
Q 045618 91 ERLRRTKVLIVLDDVN 106 (349)
Q Consensus 91 ~~L~~~~~LlVlDdv~ 106 (349)
..+.+. =++.+|-+-
T Consensus 277 ~~l~~~-d~ILVDTaG 291 (407)
T COG1419 277 EALRDC-DVILVDTAG 291 (407)
T ss_pred HHhhcC-CEEEEeCCC
Confidence 344444 345557664
No 167
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=82.90 E-value=1.7 Score=34.48 Aligned_cols=18 Identities=11% Similarity=-0.110 Sum_probs=14.3
Q ss_pred CCCCCchhhHHHHHHhhh
Q 045618 17 ATSCGIVKIRRCLMVFRL 34 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~~ 34 (349)
.|+-|-||||+|+.....
T Consensus 5 ~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 5 CGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 467799999999976643
No 168
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=82.24 E-value=2.6 Score=43.59 Aligned_cols=31 Identities=13% Similarity=0.415 Sum_probs=18.6
Q ss_pred HHHHHhCC-CceEEEEecCCCc--hhHHHHHccc
Q 045618 88 YVRERLRR-TKVLIVLDDVNKV--GQLEYLIGGL 118 (349)
Q Consensus 88 ~l~~~L~~-~~~LlVlDdv~~~--~~~~~l~~~~ 118 (349)
.+.+.+.. ...+|+||+++.. +.++.|+..+
T Consensus 548 ~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 548 LLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred hHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 34444443 4579999999843 4455555443
No 169
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=81.96 E-value=8.5 Score=33.90 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=24.6
Q ss_pred CCceEEEEecCC---CchhHHHHHccc----CCCCCCcEEEEEeCcchhhc
Q 045618 95 RTKVLIVLDDVN---KVGQLEYLIGGL----ERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 95 ~~~~LlVlDdv~---~~~~~~~l~~~~----~~~~~~~~IlvTTR~~~~~~ 138 (349)
..|++|.+||.. +......|...+ .....+..|..||..+++..
T Consensus 105 ~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 105 PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred CCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 469999999995 333345544433 22223455555665555543
No 170
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=81.30 E-value=5.8 Score=36.23 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=36.9
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhcccC-cccEEEcCCCCh
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNFG-VGNIYKVNGLKY 153 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~~-~~~~~~l~~L~~ 153 (349)
.++.-++|+|+++.. +....+...+......+.+|++|... .+...+. -...+++++.+.
T Consensus 107 ~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 107 EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCCchH
Confidence 356778999999854 34566666655556677777777643 3333332 234677766333
No 171
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.28 E-value=4.2 Score=42.37 Aligned_cols=113 Identities=14% Similarity=0.063 Sum_probs=58.6
Q ss_pred CCceEEEEecCCC---chhH----HHHHcccCCCCCCcEEEEEeCcchhhcccCcc-cEEEcCCCChHhHHHHHHHhhcc
Q 045618 95 RTKVLIVLDDVNK---VGQL----EYLIGGLERFGPGSRIIVTTRDRRVLDNFGVG-NIYKVNGLKYREALELFCNCAFK 166 (349)
Q Consensus 95 ~~~~LlVlDdv~~---~~~~----~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~~~-~~~~l~~L~~~ea~~L~~~~a~~ 166 (349)
..+.|+++|..-. +..- ..++..+. ..++.+|+||....+....... .+......-..+... +......
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~-~~Ykl~~ 482 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEETLR-PTYRLLI 482 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCc-EEEEEee
Confidence 4778999999963 2222 22233322 2478999999987765443211 111111000111111 1111111
Q ss_pred CCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhccCCHHHHHHHHHHhh
Q 045618 167 ENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQKSKLDWESALDNLK 215 (349)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~~~~~~~~~l~~l~ 215 (349)
+ .+. ...|-+|++++ |+|-.+.--|..+..........+++.|.
T Consensus 483 G-~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 483 G-IPG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred C-CCC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1 111 34467788877 78888887777776655556666666654
No 172
>PTZ00202 tuzin; Provisional
Probab=79.79 E-value=4.6 Score=38.92 Aligned_cols=131 Identities=12% Similarity=0.014 Sum_probs=69.6
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHH-----HHH
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPE-----YVR 90 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~-----~l~ 90 (349)
..|+.|.|||++++..... .... . .++... +..++++.++.++.-.+.....++.. .+.
T Consensus 291 LtG~~G~GKTTLlR~~~~~---l~~~-q---------L~vNpr---g~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~ 354 (550)
T PTZ00202 291 FTGFRGCGKSSLCRSAVRK---EGMP-A---------VFVDVR---GTEDTLRSVVKALGVPNVEACGDLLDFISEACRR 354 (550)
T ss_pred EECCCCCCHHHHHHHHHhc---CCce-E---------EEECCC---CHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Confidence 5677899999998754422 1111 1 112222 45889999999984222222122322 223
Q ss_pred HHhC-CCceEEEEecCCCchh---HHHHHcccCCCCCCcEEEEEeCcchhhccc---CcccEEEcCCCChHhHHHHHHHh
Q 045618 91 ERLR-RTKVLIVLDDVNKVGQ---LEYLIGGLERFGPGSRIIVTTRDRRVLDNF---GVGNIYKVNGLKYREALELFCNC 163 (349)
Q Consensus 91 ~~L~-~~~~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~---~~~~~~~l~~L~~~ea~~L~~~~ 163 (349)
.... +++.+||+-=-+..+. ..+.. .+.....-|+|++---.+.+.... .--..|-+++++.++|...-.+.
T Consensus 355 ~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 355 AKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred HHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 2333 6777777765443221 11111 112224467888766554432211 12247889999999987765543
No 173
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=79.23 E-value=7.3 Score=40.78 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=40.3
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHh-hcccCCCCCCHHHHHHHHhC
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWL-VEQEQIRTPNLPEYVRERLR 94 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l-~~~~~~~~~~~~~~l~~~L~ 94 (349)
-.||-|+|||-||+..-...+- +++ .++++. +.+.+. .+++ ..++...-.+....|.+.++
T Consensus 596 flGpdgvGKt~lAkaLA~~~Fg---se~---------~~IriD----mse~~e--vskligsp~gyvG~e~gg~Lteavr 657 (898)
T KOG1051|consen 596 FLGPDGVGKTELAKALAEYVFG---SEE---------NFIRLD----MSEFQE--VSKLIGSPPGYVGKEEGGQLTEAVK 657 (898)
T ss_pred EECCCchhHHHHHHHHHHHHcC---Ccc---------ceEEec----hhhhhh--hhhccCCCcccccchhHHHHHHHHh
Confidence 3567899999998843322111 111 122221 122222 3333 23333333444448888998
Q ss_pred CCc-eEEEEecCCCc
Q 045618 95 RTK-VLIVLDDVNKV 108 (349)
Q Consensus 95 ~~~-~LlVlDdv~~~ 108 (349)
.+. ..+.||||+..
T Consensus 658 rrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 658 RRPYSVVLFEEIEKA 672 (898)
T ss_pred cCCceEEEEechhhc
Confidence 875 57888999843
No 174
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=78.98 E-value=3 Score=40.17 Aligned_cols=17 Identities=12% Similarity=-0.121 Sum_probs=13.6
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..||.|.|||++|+...
T Consensus 199 l~GppGtGKT~lA~~la 215 (459)
T PRK11331 199 LQGPPGVGKTFVARRLA 215 (459)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56778999999998443
No 175
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=78.85 E-value=3.8 Score=41.51 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=13.2
Q ss_pred CCCCCchhhHHHHHHhhh
Q 045618 17 ATSCGIVKIRRCLMVFRL 34 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~~ 34 (349)
.|+-|+||||||..+...
T Consensus 332 ~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 332 CGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred ecCCCCChhHHHHHHHHh
Confidence 345699999999855544
No 176
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=78.52 E-value=4.1 Score=33.76 Aligned_cols=15 Identities=13% Similarity=-0.192 Sum_probs=12.3
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|+.|-|||++|..
T Consensus 6 i~G~~~sGKS~~a~~ 20 (170)
T PRK05800 6 VTGGARSGKSRFAER 20 (170)
T ss_pred EECCCCccHHHHHHH
Confidence 456789999999984
No 177
>PRK12608 transcription termination factor Rho; Provisional
Probab=78.46 E-value=6.6 Score=36.94 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=12.4
Q ss_pred CCCceEEEEecCCCc
Q 045618 94 RRTKVLIVLDDVNKV 108 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~ 108 (349)
.+++++||+|++...
T Consensus 218 ~GkdVVLvlDsltr~ 232 (380)
T PRK12608 218 QGKDVVILLDSLTRL 232 (380)
T ss_pred cCCCEEEEEeCcHHH
Confidence 479999999999643
No 178
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=77.78 E-value=23 Score=34.81 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=50.4
Q ss_pred HHHHHHHHhCCCceEEEEecCCCc-------------hhHHHHHcccC--CCCCCcEEEEEeCcchhhccc-----Cccc
Q 045618 85 LPEYVRERLRRTKVLIVLDDVNKV-------------GQLEYLIGGLE--RFGPGSRIIVTTRDRRVLDNF-----GVGN 144 (349)
Q Consensus 85 ~~~~l~~~L~~~~~LlVlDdv~~~-------------~~~~~l~~~~~--~~~~~~~IlvTTR~~~~~~~~-----~~~~ 144 (349)
+.+......+...+.|.+|.++.. .....++..+. ....+..||-||-.++..... ....
T Consensus 324 ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~ 403 (494)
T COG0464 324 IRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDR 403 (494)
T ss_pred HHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccce
Confidence 333455555678999999999521 23444444442 223344455555555443321 2345
Q ss_pred EEEcCCCChHhHHHHHHHhhc
Q 045618 145 IYKVNGLKYREALELFCNCAF 165 (349)
Q Consensus 145 ~~~l~~L~~~ea~~L~~~~a~ 165 (349)
.+.+++.+.++..+.|..+..
T Consensus 404 ~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 404 LIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EeecCCCCHHHHHHHHHHHhc
Confidence 788999999999999999884
No 179
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=77.22 E-value=15 Score=30.57 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=29.4
Q ss_pred HHHHHhCC-CceEEEEecCCC-----chhHHHHHcccCCCCCCcEEEEEeCcch
Q 045618 88 YVRERLRR-TKVLIVLDDVNK-----VGQLEYLIGGLERFGPGSRIIVTTRDRR 135 (349)
Q Consensus 88 ~l~~~L~~-~~~LlVlDdv~~-----~~~~~~l~~~~~~~~~~~~IlvTTR~~~ 135 (349)
..++.+.. .-=|+|||.+-. .-..+.+...+....++..||+|-|+.+
T Consensus 88 ~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 88 HAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 44555554 445999999852 1222333333333456789999999874
No 180
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=76.89 E-value=6.1 Score=32.72 Aligned_cols=75 Identities=11% Similarity=0.058 Sum_probs=36.9
Q ss_pred CCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhh-cccCCCCCCHHHHHHHHhCC
Q 045618 17 ATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLV-EQEQIRTPNLPEYVRERLRR 95 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~-~~~~~~~~~~~~~l~~~L~~ 95 (349)
.|+.|-|||+.|...-.. . .. ...++.-....+ .++++.|.+... ........+....+.+.+..
T Consensus 5 ~G~~~sGKS~~a~~~~~~-~----~~--------~~~y~at~~~~d-~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~ 70 (169)
T cd00544 5 TGGARSGKSRFAERLAAE-L----GG--------PVTYIATAEAFD-DEMAERIARHRKRRPAHWRTIETPRDLVSALKE 70 (169)
T ss_pred ECCCCCCHHHHHHHHHHh-c----CC--------CeEEEEccCcCC-HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHh
Confidence 567799999999743211 0 10 112233333323 346666655431 22222222222256666633
Q ss_pred --CceEEEEecC
Q 045618 96 --TKVLIVLDDV 105 (349)
Q Consensus 96 --~~~LlVlDdv 105 (349)
+.-.+++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 2347999997
No 181
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.09 E-value=8.9 Score=31.56 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=30.7
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+...+..+.-+++||.... ....+.+...+.....+..||++|.+.....
T Consensus 106 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 106 AIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 56777777888999999863 2222222222211123567888888776554
No 182
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=75.55 E-value=22 Score=30.92 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=37.6
Q ss_pred HHHHHhCCCceEEEEecCC---C---chhHHHHHcccCCCCCCcEEEEEeCcchhhcccCcccEEEc
Q 045618 88 YVRERLRRTKVLIVLDDVN---K---VGQLEYLIGGLERFGPGSRIIVTTRDRRVLDNFGVGNIYKV 148 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~---~---~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~~~~~~~l 148 (349)
.+.+.|-...-+|+-|.-- | ...+-.++..+.. ..|..||+.|-++.++..+ .+.+.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 7888888999999999863 1 2223333332211 3477899999999888763 344444
No 183
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=75.52 E-value=4.4 Score=38.15 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCceEEEEecCCC--c---hhHHHHHcccCCCCCCcEEEEEeCcch
Q 045618 85 LPEYVRERLRRTKVLIVLDDVNK--V---GQLEYLIGGLERFGPGSRIIVTTRDRR 135 (349)
Q Consensus 85 ~~~~l~~~L~~~~~LlVlDdv~~--~---~~~~~l~~~~~~~~~~~~IlvTTR~~~ 135 (349)
.-.-+........+||.+|...- . -.+..|...+. . .+.|+|.|.|+.
T Consensus 182 pl~~vA~eIa~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf--~-~GvVlvATSNR~ 234 (467)
T KOG2383|consen 182 PLPVVADEIAEEAILLCFDEFQVTDVADAMILKRLFEHLF--K-NGVVLVATSNRA 234 (467)
T ss_pred ccHHHHHHHhhhceeeeechhhhhhHHHHHHHHHHHHHHH--h-CCeEEEEeCCCC
Confidence 33367777778899999998752 2 23555555553 2 356777776663
No 184
>PRK13531 regulatory ATPase RavA; Provisional
Probab=75.39 E-value=7.6 Score=37.86 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=34.3
Q ss_pred EEEEecCCCc--hhHHHHHcccCCC-----C----CCcEEEEEeCcchhh-------cccCcccEEEcCCCChHhH-HHH
Q 045618 99 LIVLDDVNKV--GQLEYLIGGLERF-----G----PGSRIIVTTRDRRVL-------DNFGVGNIYKVNGLKYREA-LEL 159 (349)
Q Consensus 99 LlVlDdv~~~--~~~~~l~~~~~~~-----~----~~~~IlvTTR~~~~~-------~~~~~~~~~~l~~L~~~ea-~~L 159 (349)
++++|+++.. .....|+..+... + -..+++|++.++--. ......-.+.+++++.++. ..+
T Consensus 110 lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~l 189 (498)
T PRK13531 110 IVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSM 189 (498)
T ss_pred EEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHH
Confidence 8999999853 3344444433111 1 123466665553211 1111223688899986544 777
Q ss_pred HHHh
Q 045618 160 FCNC 163 (349)
Q Consensus 160 ~~~~ 163 (349)
+...
T Consensus 190 L~~~ 193 (498)
T PRK13531 190 LTSQ 193 (498)
T ss_pred HHcc
Confidence 7654
No 185
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=75.32 E-value=1.8 Score=33.16 Aligned_cols=18 Identities=11% Similarity=-0.151 Sum_probs=14.4
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+.|.||||+|+....
T Consensus 4 I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 4 ISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 467889999999995544
No 186
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=75.02 E-value=6.7 Score=32.52 Aligned_cols=51 Identities=12% Similarity=0.044 Sum_probs=31.1
Q ss_pred HHHHHhCCCceEEEEecCCCc---hhHHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNKV---GQLEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+.+.+-.++-++++|..... ...+.+...+.....+..||++|.+.....
T Consensus 108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 667777778889999998632 222222222211123677888888876554
No 187
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=74.82 E-value=14 Score=35.29 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=13.8
Q ss_pred hcccCCCCCchhhHHHH
Q 045618 13 ELNRATSCGIVKIRRCL 29 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~ 29 (349)
....+|++|.||||++.
T Consensus 243 vI~LVGptGvGKTTTia 259 (436)
T PRK11889 243 TIALIGPTGVGKTTTLA 259 (436)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 34577889999999976
No 188
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=74.37 E-value=10 Score=34.08 Aligned_cols=21 Identities=19% Similarity=0.407 Sum_probs=15.1
Q ss_pred HHHHHh---CCCceEEEEecCCCc
Q 045618 88 YVRERL---RRTKVLIVLDDVNKV 108 (349)
Q Consensus 88 ~l~~~L---~~~~~LlVlDdv~~~ 108 (349)
.+.+++ .++++|+++||+-.-
T Consensus 152 ~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 152 TMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHhcCCeEEEEEeChhHH
Confidence 344444 489999999998643
No 189
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=74.09 E-value=17 Score=36.99 Aligned_cols=130 Identities=12% Similarity=0.144 Sum_probs=69.6
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhC-
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPEYVRERLR- 94 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~- 94 (349)
.+||=|+|||.|++...... ...| ++++-.--.. -.++-|+..+=+.++.-++.+.++
T Consensus 355 LVGPPGVGKTSLgkSIA~al-----~Rkf----------vR~sLGGvrD------EAEIRGHRRTYIGamPGrIiQ~mkk 413 (782)
T COG0466 355 LVGPPGVGKTSLGKSIAKAL-----GRKF----------VRISLGGVRD------EAEIRGHRRTYIGAMPGKIIQGMKK 413 (782)
T ss_pred EECCCCCCchhHHHHHHHHh-----CCCE----------EEEecCcccc------HHHhccccccccccCChHHHHHHHH
Confidence 45677999999998544321 2233 3333221000 123344444444555555555544
Q ss_pred --CCceEEEEecCCCc------hhHHHHHcccCCCCCC-------------c-EEEEEeCcc-h-hhc-ccCcccEEEcC
Q 045618 95 --RTKVLIVLDDVNKV------GQLEYLIGGLERFGPG-------------S-RIIVTTRDR-R-VLD-NFGVGNIYKVN 149 (349)
Q Consensus 95 --~~~~LlVlDdv~~~------~~~~~l~~~~~~~~~~-------------~-~IlvTTR~~-~-~~~-~~~~~~~~~l~ 149 (349)
.++=+++||.++.. +-..+++..+.+-.+. | .+.|+|-|. + +.. .+.-..++++.
T Consensus 414 a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~ls 493 (782)
T COG0466 414 AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLS 493 (782)
T ss_pred hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeec
Confidence 36779999999732 1123333333221111 2 344555443 2 211 12345689999
Q ss_pred CCChHhHHHHHHHhhcc
Q 045618 150 GLKYREALELFCNCAFK 166 (349)
Q Consensus 150 ~L~~~ea~~L~~~~a~~ 166 (349)
+.+++|-.++-+++..+
T Consensus 494 gYt~~EKl~IAk~~LiP 510 (782)
T COG0466 494 GYTEDEKLEIAKRHLIP 510 (782)
T ss_pred CCChHHHHHHHHHhcch
Confidence 99999998888777643
No 190
>PRK07261 topology modulation protein; Provisional
Probab=74.03 E-value=1.6 Score=36.24 Aligned_cols=17 Identities=12% Similarity=-0.138 Sum_probs=14.1
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
...|++|.||||+|+..
T Consensus 4 ~i~G~~GsGKSTla~~l 20 (171)
T PRK07261 4 AIIGYSGSGKSTLARKL 20 (171)
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 35788999999999854
No 191
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=72.65 E-value=6.7 Score=37.29 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=34.1
Q ss_pred HHHHHhCCCceEEEEecCCCc---hhHHHHHcccCCC--CCCcEEEEEeCcchhhcccCcc
Q 045618 88 YVRERLRRTKVLIVLDDVNKV---GQLEYLIGGLERF--GPGSRIIVTTRDRRVLDNFGVG 143 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~---~~~~~l~~~~~~~--~~~~~IlvTTR~~~~~~~~~~~ 143 (349)
+|...+..+.=+++.|..... .-...+...+... ..|..+++.|+.+++...+.+.
T Consensus 517 KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD 577 (593)
T COG2401 517 KLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPD 577 (593)
T ss_pred HHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCc
Confidence 888899999889999988532 1111111111111 2466777777778877766443
No 192
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=72.53 E-value=6.5 Score=33.41 Aligned_cols=51 Identities=10% Similarity=0.251 Sum_probs=34.8
Q ss_pred CCHHHHHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchh
Q 045618 83 PNLPEYVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRV 136 (349)
Q Consensus 83 ~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~ 136 (349)
....+.++..+....=.+++|.+.+.+.+....... ..|..++.|+-....
T Consensus 61 ~~~~~~i~~aLr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 61 LSFENALKAALRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred cCHHHHHHHHhcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 455667888888888899999999887766544432 234557766655543
No 193
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=71.89 E-value=14 Score=31.31 Aligned_cols=54 Identities=17% Similarity=0.081 Sum_probs=31.9
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCC-CCCCcEEEEEeCcchhhcccC
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLER-FGPGSRIIVTTRDRRVLDNFG 141 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~-~~~~~~IlvTTR~~~~~~~~~ 141 (349)
.+...+-...-++++|..-. ....+.+...+.. ...+..||++|.+......++
T Consensus 139 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~ 196 (204)
T PRK13538 139 ALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDK 196 (204)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCC
Confidence 66677777888999999863 2222233222211 123567888888876555443
No 194
>PF13730 HTH_36: Helix-turn-helix domain
Probab=71.64 E-value=11 Score=24.36 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=36.8
Q ss_pred cCChhHHHHHHHhcccCCC----C-CHHHHHHHhccc-ccHHHhHHHHhhCcce
Q 045618 232 EIKAEEKSLFLDIACFFNG----Q-DKDSVLKMIGDS-SFAHYGLNVLVDKSLV 279 (349)
Q Consensus 232 ~L~~~~~~~f~~la~fp~~----~-~~~~l~~~~~~~-~~~~~~l~~L~~~sLl 279 (349)
.|++.++.++.++.-+.++ + +.+.+....+.. .....++++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 5788888888888777533 2 467777777776 7788899999999986
No 195
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=71.58 E-value=19 Score=29.50 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=29.3
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCCCCCCcEEEEEeCcchhh
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLERFGPGSRIIVTTRDRRVL 137 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~ 137 (349)
.+.+.+-.+.-++++|..-. ....+.+...+... +..||++|.+....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 66777777888899999853 22233333332222 35688888776544
No 196
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=70.90 E-value=34 Score=30.12 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=20.0
Q ss_pred HHHHHcC-CCchHHHHHhHHhccCCHHHHHHHHHHhhcC
Q 045618 180 RILDYAN-GNPLAVRVLGSFLRQKSKLDWESALDNLKRI 217 (349)
Q Consensus 180 ~i~~~c~-glPLAl~~~a~~l~~~~~~~~~~~l~~l~~~ 217 (349)
.+.+-|+ .+|+.++-+-.+.......+-.+.+..+++.
T Consensus 229 nVfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~l 267 (333)
T KOG0991|consen 229 NVFKVCDEPHPLLVKKMLQACLKRNIDEALKILAELWKL 267 (333)
T ss_pred hhhhccCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence 3444443 4677666666555444444444555555444
No 197
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=70.74 E-value=25 Score=31.28 Aligned_cols=14 Identities=14% Similarity=0.026 Sum_probs=10.8
Q ss_pred CCCCCchhhHHHHH
Q 045618 17 ATSCGIVKIRRCLM 30 (349)
Q Consensus 17 ~~~gGiGKT~la~~ 30 (349)
.++.|.|||+++..
T Consensus 36 ~g~~G~GKT~l~~~ 49 (271)
T cd01122 36 TAGTGVGKTTFLRE 49 (271)
T ss_pred EcCCCCCHHHHHHH
Confidence 34469999999874
No 198
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=70.25 E-value=2 Score=38.16 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=9.4
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||+|.
T Consensus 12 GGvGKTT~a~ 21 (259)
T COG1192 12 GGVGKTTTAV 21 (259)
T ss_pred CCccHHHHHH
Confidence 9999999986
No 199
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=70.09 E-value=19 Score=32.19 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=57.3
Q ss_pred HHHHHHHHhCCCceEEEEecCCCc--------------hhHHHHHcccCC--CCCCcEEEEEeCcchhhccc---CcccE
Q 045618 85 LPEYVRERLRRTKVLIVLDDVNKV--------------GQLEYLIGGLER--FGPGSRIIVTTRDRRVLDNF---GVGNI 145 (349)
Q Consensus 85 ~~~~l~~~L~~~~~LlVlDdv~~~--------------~~~~~l~~~~~~--~~~~~~IlvTTR~~~~~~~~---~~~~~ 145 (349)
+.+.+.+.-+.-.|.+.+|.++-. +.+..|+..+.. .+.|..-|-.|.++.+.... .....
T Consensus 199 Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeE 278 (368)
T COG1223 199 IHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEE 278 (368)
T ss_pred HHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhhe
Confidence 344444555567899999998631 235555554421 23355555555555544332 23446
Q ss_pred EEcCCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCc
Q 045618 146 YKVNGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 146 ~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glP 189 (349)
++..-.+++|-.+++...+-.-.-+.. ...+.++.+.+|+.
T Consensus 279 IEF~LP~~eEr~~ile~y~k~~Plpv~---~~~~~~~~~t~g~S 319 (368)
T COG1223 279 IEFKLPNDEERLEILEYYAKKFPLPVD---ADLRYLAAKTKGMS 319 (368)
T ss_pred eeeeCCChHHHHHHHHHHHHhCCCccc---cCHHHHHHHhCCCC
Confidence 777777888999999888722221111 11445666666654
No 200
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=70.06 E-value=1.5 Score=39.51 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=14.3
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
.+|+.|.|||.+++..+.
T Consensus 38 l~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 38 LVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp EESSTTSSHHHHHHHHHH
T ss_pred EECCCCCchhHHHHhhhc
Confidence 467789999999986554
No 201
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=69.77 E-value=4.4 Score=34.86 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=28.1
Q ss_pred CCceEEEEecCCC---chhHHHHHcccCCCCCCcEEEEEeCcchhhccc
Q 045618 95 RTKVLIVLDDVNK---VGQLEYLIGGLERFGPGSRIIVTTRDRRVLDNF 140 (349)
Q Consensus 95 ~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~ 140 (349)
+..-++||||++. ......+...+....+.+.+||||.++.+....
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3456899999984 333444444444446678999999998877664
No 202
>PRK04296 thymidine kinase; Provisional
Probab=69.55 E-value=3.1 Score=35.16 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=25.6
Q ss_pred CCceEEEEecCCC--chhHHHHHcccCCCCCCcEEEEEeCcchh
Q 045618 95 RTKVLIVLDDVNK--VGQLEYLIGGLERFGPGSRIIVTTRDRRV 136 (349)
Q Consensus 95 ~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~IlvTTR~~~~ 136 (349)
++.-+||+|.+.- .+++..+...+. ..|..|++|.++.+.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 3456899999964 233444433322 457889999988643
No 203
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=68.67 E-value=6.5 Score=34.01 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=11.8
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|+.|.|||+++..
T Consensus 28 i~G~~GsGKT~l~~~ 42 (225)
T PRK09361 28 IYGPPGSGKTNICLQ 42 (225)
T ss_pred EECCCCCCHHHHHHH
Confidence 445589999999873
No 204
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=68.54 E-value=2.8 Score=31.70 Aligned_cols=14 Identities=21% Similarity=-0.076 Sum_probs=11.9
Q ss_pred CCCCCchhhHHHHH
Q 045618 17 ATSCGIVKIRRCLM 30 (349)
Q Consensus 17 ~~~gGiGKT~la~~ 30 (349)
.|+.|+|||++|..
T Consensus 4 ~G~~G~GKS~l~~~ 17 (107)
T PF00910_consen 4 YGPPGIGKSTLAKE 17 (107)
T ss_pred ECCCCCCHHHHHHH
Confidence 47789999999974
No 205
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=68.51 E-value=16 Score=32.96 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=12.8
Q ss_pred cccCCCCCchhhHHHH
Q 045618 14 LNRATSCGIVKIRRCL 29 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~ 29 (349)
...+|++|+||||++.
T Consensus 197 i~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 197 IALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3366779999999976
No 206
>COG1485 Predicted ATPase [General function prediction only]
Probab=68.29 E-value=16 Score=33.93 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=29.0
Q ss_pred CHHHHHHHHhCCCceEEEEecCC--Cc---hhHHHHHcccCCCCCCcEEEEEeCcc
Q 045618 84 NLPEYVRERLRRTKVLIVLDDVN--KV---GQLEYLIGGLERFGPGSRIIVTTRDR 134 (349)
Q Consensus 84 ~~~~~l~~~L~~~~~LlVlDdv~--~~---~~~~~l~~~~~~~~~~~~IlvTTR~~ 134 (349)
+.-..+...+.+.-.+|++|... |. ..+..|+..+- ..|. +||+|.|.
T Consensus 118 dpl~~iA~~~~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf--~~GV-~lvaTSN~ 170 (367)
T COG1485 118 DPLPPIADELAAETRVLCFDEFEVTDIADAMILGRLLEALF--ARGV-VLVATSNT 170 (367)
T ss_pred CccHHHHHHHHhcCCEEEeeeeeecChHHHHHHHHHHHHHH--HCCc-EEEEeCCC
Confidence 44446777777888889999864 33 33555555543 3455 55555543
No 207
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=68.10 E-value=26 Score=33.24 Aligned_cols=14 Identities=14% Similarity=0.074 Sum_probs=11.4
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|+.|+||||.+.
T Consensus 179 lvGptGvGKTTT~a 192 (388)
T PRK12723 179 LVGPTGVGKTTTIA 192 (388)
T ss_pred EECCCCCCHHHHHH
Confidence 46678999999876
No 208
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=68.07 E-value=2.9 Score=34.53 Aligned_cols=16 Identities=13% Similarity=-0.066 Sum_probs=11.3
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|+|||++....
T Consensus 29 l~G~~G~GKT~ll~~~ 44 (185)
T PF13191_consen 29 LTGESGSGKTSLLRAL 44 (185)
T ss_dssp E-B-TTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4566899999998843
No 209
>PHA02518 ParA-like protein; Provisional
Probab=67.90 E-value=2.5 Score=35.93 Aligned_cols=10 Identities=20% Similarity=0.006 Sum_probs=9.4
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||+|.
T Consensus 10 GGvGKTT~a~ 19 (211)
T PHA02518 10 GGAGKTTVAT 19 (211)
T ss_pred CCCCHHHHHH
Confidence 9999999987
No 210
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=67.59 E-value=67 Score=31.88 Aligned_cols=15 Identities=13% Similarity=-0.088 Sum_probs=12.4
Q ss_pred ccCCCCCchhhHHHH
Q 045618 15 NRATSCGIVKIRRCL 29 (349)
Q Consensus 15 ~~~~~gGiGKT~la~ 29 (349)
=..||.|-||||.++
T Consensus 114 LltGPsGcGKSTtvk 128 (634)
T KOG1970|consen 114 LLTGPSGCGKSTTVK 128 (634)
T ss_pred EEeCCCCCCchhHHH
Confidence 357889999999877
No 211
>PHA02244 ATPase-like protein
Probab=66.26 E-value=32 Score=32.40 Aligned_cols=17 Identities=12% Similarity=-0.048 Sum_probs=13.0
Q ss_pred CCCCCchhhHHHHHHhh
Q 045618 17 ATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~ 33 (349)
.|+-|.|||++|+....
T Consensus 125 ~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 125 KGGAGSGKNHIAEQIAE 141 (383)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 46679999999985443
No 212
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=66.18 E-value=3 Score=31.04 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=9.8
Q ss_pred CCCchhhHHHH
Q 045618 19 SCGIVKIRRCL 29 (349)
Q Consensus 19 ~gGiGKT~la~ 29 (349)
-||+||||++.
T Consensus 8 kgG~Gkst~~~ 18 (104)
T cd02042 8 KGGVGKTTTAV 18 (104)
T ss_pred CCCcCHHHHHH
Confidence 39999999987
No 213
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=66.16 E-value=64 Score=32.54 Aligned_cols=81 Identities=11% Similarity=0.178 Sum_probs=43.8
Q ss_pred CHHHHHHHHhCCCceEEEEecCCCc-------------hhHHHHHcccCCC------CCCcEEEEEeCcchhhcc-c---
Q 045618 84 NLPEYVRERLRRTKVLIVLDDVNKV-------------GQLEYLIGGLERF------GPGSRIIVTTRDRRVLDN-F--- 140 (349)
Q Consensus 84 ~~~~~l~~~L~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~------~~~~~IlvTTR~~~~~~~-~--- 140 (349)
.+.+...+.-....|++.+|+++-. ..+..|+.....- +.+.-||-+|..++.... +
T Consensus 270 kiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRa 349 (802)
T KOG0733|consen 270 KIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRA 349 (802)
T ss_pred HHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhcc
Confidence 3444455555668999999999631 1234444333111 233344444444443221 1
Q ss_pred -CcccEEEcCCCChHhHHHHHHHhh
Q 045618 141 -GVGNIYKVNGLKYREALELFCNCA 164 (349)
Q Consensus 141 -~~~~~~~l~~L~~~ea~~L~~~~a 164 (349)
...+.+.+.-.+...-.++++..+
T Consensus 350 GRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 350 GRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred ccccceeeecCCchHHHHHHHHHHH
Confidence 134467777777777777777665
No 214
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=66.12 E-value=29 Score=33.45 Aligned_cols=14 Identities=21% Similarity=0.126 Sum_probs=11.2
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|+.|.||||.+.
T Consensus 105 lvG~~GvGKTTtaa 118 (429)
T TIGR01425 105 FVGLQGSGKTTTCT 118 (429)
T ss_pred EECCCCCCHHHHHH
Confidence 45568999999876
No 215
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=65.97 E-value=2.4 Score=38.82 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=10.9
Q ss_pred CCCCCchhhHHHH
Q 045618 17 ATSCGIVKIRRCL 29 (349)
Q Consensus 17 ~~~gGiGKT~la~ 29 (349)
.|-||+||||+|.
T Consensus 7 ~GKGGVGKTT~aa 19 (305)
T PF02374_consen 7 GGKGGVGKTTVAA 19 (305)
T ss_dssp EESTTSSHHHHHH
T ss_pred ecCCCCCcHHHHH
Confidence 4569999999986
No 216
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=65.88 E-value=84 Score=28.49 Aligned_cols=118 Identities=17% Similarity=0.233 Sum_probs=64.8
Q ss_pred CceE-EEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhcccC-cccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 96 TKVL-IVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNFG-VGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 96 ~~~L-lVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~~-~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+.|- +|+-.+++. +.-..+........+.+++|+.-.+- .+...+. -.-.++++..+++|-...+.+..-+....
T Consensus 126 r~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~ 205 (351)
T KOG2035|consen 126 RPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ 205 (351)
T ss_pred cceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc
Confidence 3453 444445432 22223333333335677777654332 1222221 12368899999999999998887444433
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHHhHHhcc-----------CCHHHHHHHHHHhh
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRVLGSFLRQ-----------KSKLDWESALDNLK 215 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~-----------~~~~~~~~~l~~l~ 215 (349)
.+ .+.+.+|+++++|.---.-.+-..++- -+..+|+-++.+..
T Consensus 206 lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 206 LP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred Cc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHH
Confidence 33 577889999988764322222222211 13568888877743
No 217
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=65.79 E-value=32 Score=30.92 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=29.7
Q ss_pred CCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchh
Q 045618 95 RTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRV 136 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~ 136 (349)
...=++++|.+...+.+..+..... .|..||+||-+..+
T Consensus 193 ~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 193 MSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 4788999999988777777766542 47789999986554
No 218
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=65.76 E-value=3 Score=34.89 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=10.9
Q ss_pred CCCCCchhhHHHH
Q 045618 17 ATSCGIVKIRRCL 29 (349)
Q Consensus 17 ~~~gGiGKT~la~ 29 (349)
.+-||+||||+|.
T Consensus 5 ~~kGG~GKTt~a~ 17 (195)
T PF01656_consen 5 SGKGGVGKTTIAA 17 (195)
T ss_dssp ESSTTSSHHHHHH
T ss_pred cCCCCccHHHHHH
Confidence 3559999999987
No 219
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=65.57 E-value=99 Score=31.29 Aligned_cols=155 Identities=14% Similarity=0.167 Sum_probs=87.3
Q ss_pred cchHHhhcccCCCC--------CchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhccc
Q 045618 7 TDDLLAELNRATSC--------GIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQE 78 (349)
Q Consensus 7 ~~d~~~~~~~~~~g--------GiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~ 78 (349)
.-|++..++...|+ |=|||-||+.+..-.- ..|+.+- .+ .++....|.+
T Consensus 533 ~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag---------------~NFisVK---GP-----ELlNkYVGES 589 (802)
T KOG0733|consen 533 RPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG---------------ANFISVK---GP-----ELLNKYVGES 589 (802)
T ss_pred CHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc---------------CceEeec---CH-----HHHHHHhhhH
Confidence 45677777766663 7799999986653211 1122222 12 2455554432
Q ss_pred CCCCCCHHHHHHHHhCCCceEEEEecCCC-------------chhHHHHHcccCCC--CCCcEEEEEeCcchhhcc--cC
Q 045618 79 QIRTPNLPEYVRERLRRTKVLIVLDDVNK-------------VGQLEYLIGGLERF--GPGSRIIVTTRDRRVLDN--FG 141 (349)
Q Consensus 79 ~~~~~~~~~~l~~~L~~~~~LlVlDdv~~-------------~~~~~~l~~~~~~~--~~~~~IlvTTR~~~~~~~--~~ 141 (349)
. ..+.....+.-..-.|.|.||.++. ...+..|+..+.-. ..|.-||-.|..+++... +.
T Consensus 590 E---rAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLR 666 (802)
T KOG0733|consen 590 E---RAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILR 666 (802)
T ss_pred H---HHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcC
Confidence 2 1223334444455799999999963 12355665554321 346667777777765432 22
Q ss_pred ---cccEEEcCCCChHhHHHHHHHhhccCC---CCChhHHHHHHHHHHHcCCCc
Q 045618 142 ---VGNIYKVNGLKYREALELFCNCAFKEN---HCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 142 ---~~~~~~l~~L~~~ea~~L~~~~a~~~~---~~~~~~~~~~~~i~~~c~glP 189 (349)
-...+-++..+.+|-..+++...-... ...-.+.++++. .+|.|.-
T Consensus 667 PGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 667 PGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 234777888899999999998873212 112234443332 4566765
No 220
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=65.41 E-value=7.1 Score=32.01 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=30.4
Q ss_pred HHHHHhCC-CceEEEEecCCCc-----hhHHHHHcccCCCCCCcEEEEEeCcch
Q 045618 88 YVRERLRR-TKVLIVLDDVNKV-----GQLEYLIGGLERFGPGSRIIVTTRDRR 135 (349)
Q Consensus 88 ~l~~~L~~-~~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~IlvTTR~~~ 135 (349)
..++.+.. .-=|||||.+-.. -..+.+...+.....+..||+|.|+.+
T Consensus 86 ~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 86 FAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 34444444 4569999999532 233444444444456789999999964
No 221
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.35 E-value=53 Score=29.16 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=28.0
Q ss_pred CCCcEEEEEeCcchhhccc--C---cccEEEcCCCChHhHHHHHHHhh
Q 045618 122 GPGSRIIVTTRDRRVLDNF--G---VGNIYKVNGLKYREALELFCNCA 164 (349)
Q Consensus 122 ~~~~~IlvTTR~~~~~~~~--~---~~~~~~l~~L~~~ea~~L~~~~a 164 (349)
.++-+||..|..-++.... . ....++.++.+.+.-.++++-+.
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 3466777777666654332 2 23467788888777778887665
No 222
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=65.18 E-value=17 Score=35.52 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=12.0
Q ss_pred CCCceEEEEecCCC
Q 045618 94 RRTKVLIVLDDVNK 107 (349)
Q Consensus 94 ~~~~~LlVlDdv~~ 107 (349)
.++++|+|+||+-.
T Consensus 231 ~G~~VLlv~DdlTr 244 (485)
T CHL00059 231 RGRHTLIIYDDLSK 244 (485)
T ss_pred cCCCEEEEEcChhH
Confidence 47899999999964
No 223
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=65.04 E-value=15 Score=33.23 Aligned_cols=77 Identities=17% Similarity=0.083 Sum_probs=49.8
Q ss_pred cCCCCCchhhHHHHHHhh--hhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVFR--LCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPEYVRERL 93 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~--~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L 93 (349)
.++..|+|||+-++..-. ...| .+.-+...+...+...+.....+.......+..+.+...+
T Consensus 99 vyg~~g~gKt~a~~~y~~s~p~~~----------------l~~~~p~~~a~~~i~~i~~~~~~~~~~~~~d~~~~~~~~l 162 (297)
T COG2842 99 VYGYAGLGKTQAAKNYAPSNPNAL----------------LIEADPSYTALVLILIICAAAFGATDGTINDLTERLMIRL 162 (297)
T ss_pred EeccccchhHHHHHhhcccCccce----------------eecCChhhHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 456679999998874321 1122 1222333356666666666666655555556666778888
Q ss_pred CCCceEEEEecCCCc
Q 045618 94 RRTKVLIVLDDVNKV 108 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~ 108 (349)
.+..-+++.|+.+..
T Consensus 163 ~~~~~~iivDEA~~L 177 (297)
T COG2842 163 RDTVRLIIVDEADRL 177 (297)
T ss_pred ccCcceeeeehhhcc
Confidence 999999999999753
No 224
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=64.90 E-value=16 Score=30.37 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=30.3
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCCC-CC-CcEEEEEeCcchhh
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLERF-GP-GSRIIVTTRDRRVL 137 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~-~~-~~~IlvTTR~~~~~ 137 (349)
.+.+.+-...-++++|..-. ....+.+...+... .. +..||++|.+....
T Consensus 107 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 107 LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 66777778889999999853 22223332222111 12 56788888876644
No 225
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=64.79 E-value=4 Score=34.26 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=15.2
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
.++|+|.||+|+++..+.
T Consensus 9 lsgPSG~GKsTl~k~L~~ 26 (191)
T COG0194 9 LSGPSGVGKSTLVKALLE 26 (191)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 578899999999996664
No 226
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=64.74 E-value=1.2e+02 Score=29.18 Aligned_cols=104 Identities=11% Similarity=0.058 Sum_probs=71.4
Q ss_pred CCCceEEEEecCCCc-----------hhHHHHHcccCCCCCCcEEEEEeCcchhhcc----cC--cccEEEcCCCChHhH
Q 045618 94 RRTKVLIVLDDVNKV-----------GQLEYLIGGLERFGPGSRIIVTTRDRRVLDN----FG--VGNIYKVNGLKYREA 156 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~----~~--~~~~~~l~~L~~~ea 156 (349)
..++=++|+||.... .+|...+.. .+--+||++|-+...... +. ....+.|...+++.|
T Consensus 146 Pe~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~A 221 (431)
T PF10443_consen 146 PERRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESA 221 (431)
T ss_pred CccCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHH
Confidence 445778999999532 345554444 566789999877654433 21 335788999999999
Q ss_pred HHHHHHhhccCCCC------------------ChhHHHHHHHHHHHcCCCchHHHHHhHHhcc
Q 045618 157 LELFCNCAFKENHC------------------PEDLLVHSKRILDYANGNPLAVRVLGSFLRQ 201 (349)
Q Consensus 157 ~~L~~~~a~~~~~~------------------~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~ 201 (349)
.+............ ...........++.+||=-.-|..+++.++.
T Consensus 222 k~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 222 KQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 99998887442100 0124455667788899999999999988876
No 227
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=64.53 E-value=17 Score=26.83 Aligned_cols=63 Identities=10% Similarity=0.129 Sum_probs=47.8
Q ss_pred HhHhcCChhHHHHHHHhcc-------cCCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC-CCeEEec
Q 045618 228 ISYNEIKAEEKSLFLDIAC-------FFNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR-GNQLQMH 290 (349)
Q Consensus 228 ~s~~~L~~~~~~~f~~la~-------fp~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~-~~~~~mH 290 (349)
+.+..++.....+++.++- ....++...+..+.... ..+...++.|.++++|.... .|.+.|.
T Consensus 18 l~~~~l~~r~~~vLl~L~~~~~G~~~~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r~~~~~~~~~n 89 (95)
T TIGR01610 18 LPGADLSGREFRVLLAIIRLTYGWNKKQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQGMMGIVGVN 89 (95)
T ss_pred HHhCCCCHHHHHHHHHHHHHHhCccccCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeecCCceeecC
Confidence 4566777778888877762 22337788888888888 78888999999999999763 3667765
No 228
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=64.34 E-value=3 Score=37.18 Aligned_cols=12 Identities=25% Similarity=0.094 Sum_probs=10.0
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+=||+||||++.
T Consensus 7 gKGGVGKTT~~~ 18 (268)
T TIGR01281 7 GKGGIGKSTTSS 18 (268)
T ss_pred cCCcCcHHHHHH
Confidence 349999999876
No 229
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=64.18 E-value=16 Score=34.11 Aligned_cols=36 Identities=22% Similarity=0.508 Sum_probs=26.4
Q ss_pred ceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch
Q 045618 97 KVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR 135 (349)
Q Consensus 97 ~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~ 135 (349)
+.++|+|.+.+. .++..++.. .+.|+||+.|---.+
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR---~G~GsKIVl~gd~aQ 389 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTR---AGEGSKIVLTGDPAQ 389 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHh---ccCCCEEEEcCCHHH
Confidence 679999999864 556666554 388999998865443
No 230
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=64.14 E-value=3.2 Score=36.90 Aligned_cols=12 Identities=25% Similarity=0.091 Sum_probs=10.2
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||++.
T Consensus 8 ~KGGvGKTT~~~ 19 (270)
T cd02040 8 GKGGIGKSTTTQ 19 (270)
T ss_pred eCCcCCHHHHHH
Confidence 359999999976
No 231
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=63.97 E-value=13 Score=30.56 Aligned_cols=49 Identities=27% Similarity=0.336 Sum_probs=30.1
Q ss_pred HHHHHhCCCceEEEEecCCC---chh---HHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQ---LEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~---~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+...+..+.-++++|+... ... +..++..+. ..+..||++|.+.....
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH
Confidence 66677777778999999863 222 223333322 23667888888776553
No 232
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=63.96 E-value=3.5 Score=38.00 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=11.3
Q ss_pred CCCCCchhhHHHHH
Q 045618 17 ATSCGIVKIRRCLM 30 (349)
Q Consensus 17 ~~~gGiGKT~la~~ 30 (349)
.|-||+||||.|..
T Consensus 8 ~GKGGVGKTT~aaA 21 (322)
T COG0003 8 TGKGGVGKTTIAAA 21 (322)
T ss_pred ecCCcccHHHHHHH
Confidence 45699999999763
No 233
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=63.90 E-value=20 Score=32.25 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=12.5
Q ss_pred CCCceEEEEecCCCc
Q 045618 94 RRTKVLIVLDDVNKV 108 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~ 108 (349)
.++++|+++||+-.-
T Consensus 159 ~G~~Vlvl~DslTr~ 173 (274)
T cd01132 159 NGKHALIIYDDLSKQ 173 (274)
T ss_pred CCCCEEEEEcChHHH
Confidence 478999999999654
No 234
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=63.48 E-value=3.5 Score=36.11 Aligned_cols=10 Identities=20% Similarity=0.122 Sum_probs=9.4
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||++.
T Consensus 11 GGvGKTT~a~ 20 (231)
T PRK13849 11 GGAGKTTALM 20 (231)
T ss_pred CCccHHHHHH
Confidence 9999999987
No 235
>PRK06762 hypothetical protein; Provisional
Probab=63.42 E-value=23 Score=28.81 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|-||||+|+...
T Consensus 7 i~G~~GsGKST~A~~L~ 23 (166)
T PRK06762 7 IRGNSGSGKTTIAKQLQ 23 (166)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 46778999999998543
No 236
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=63.18 E-value=11 Score=32.60 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=12.4
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|.|||+++...
T Consensus 24 i~G~~GsGKT~l~~~l 39 (235)
T cd01123 24 IFGEFGSGKTQLCHQL 39 (235)
T ss_pred EECCCCCCHHHHHHHH
Confidence 4556899999999743
No 237
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.09 E-value=1.9e+02 Score=30.09 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=61.1
Q ss_pred HHHHHhCCCceEEEEecCCCc-----------------hhHHHHHcccCCCC--CCcEEEEEeCcchhhccc--C---cc
Q 045618 88 YVRERLRRTKVLIVLDDVNKV-----------------GQLEYLIGGLERFG--PGSRIIVTTRDRRVLDNF--G---VG 143 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~-----------------~~~~~l~~~~~~~~--~~~~IlvTTR~~~~~~~~--~---~~ 143 (349)
.....-....+.+-+|.++.. .-+.+++....-+. .+..++-+|...++.... . ..
T Consensus 395 lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfd 474 (774)
T KOG0731|consen 395 LFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFD 474 (774)
T ss_pred HHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccc
Confidence 344444456788888888521 12455554443222 234455566666654321 1 34
Q ss_pred cEEEcCCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchH
Q 045618 144 NIYKVNGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLA 191 (349)
Q Consensus 144 ~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLA 191 (349)
..+.++..+.....++|..++-..... .+...+.+ |+....|++=|
T Consensus 475 r~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 475 RQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 578888888899999999988444332 34445555 88888888744
No 238
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=63.08 E-value=1.2e+02 Score=31.45 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=79.3
Q ss_pred CCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhCCC
Q 045618 17 ATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPEYVRERLRRT 96 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~~ 96 (349)
.||-|-|||-||......+ +..++.+- .++ +|.+..|.+. +++.+...+.-.-+
T Consensus 707 yGppGcGKT~la~a~a~~~---------------~~~fisvK---GPE-----lL~KyIGaSE---q~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 707 YGPPGCGKTLLASAIASNS---------------NLRFISVK---GPE-----LLSKYIGASE---QNVRDLFERAQSAK 760 (952)
T ss_pred ECCCCCcHHHHHHHHHhhC---------------CeeEEEec---CHH-----HHHHHhcccH---HHHHHHHHHhhccC
Confidence 4557999999997554321 22334443 222 4555544333 23444444555669
Q ss_pred ceEEEEecCCCc-------------hhHHHHHcccC--CCCCCcEEEEEeCcchhhcc--cCc---ccEEEcCCCChHhH
Q 045618 97 KVLIVLDDVNKV-------------GQLEYLIGGLE--RFGPGSRIIVTTRDRRVLDN--FGV---GNIYKVNGLKYREA 156 (349)
Q Consensus 97 ~~LlVlDdv~~~-------------~~~~~l~~~~~--~~~~~~~IlvTTR~~~~~~~--~~~---~~~~~l~~L~~~ea 156 (349)
.|.|.+|..++. ..+..++..+. ..-.|.-|+-.|..++.... +.+ .+.+.-+..++.|-
T Consensus 761 PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eR 840 (952)
T KOG0735|consen 761 PCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPER 840 (952)
T ss_pred CeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHH
Confidence 999999999742 24666666653 22246666666665654332 122 23445566677778
Q ss_pred HHHHHHhhccCCCCChhHHHHHHHHHHHcCCCc
Q 045618 157 LELFCNCAFKENHCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 157 ~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glP 189 (349)
.++|...+-.-..+. ....+.++.+..|.-
T Consensus 841 l~il~~ls~s~~~~~---~vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 841 LEILQVLSNSLLKDT---DVDLECLAQKTDGFT 870 (952)
T ss_pred HHHHHHHhhccCCcc---ccchHHHhhhcCCCc
Confidence 888877652222111 222345666666665
No 239
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=63.02 E-value=20 Score=23.53 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=43.0
Q ss_pred cCChhHHHHHHHhcccCCC-CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC
Q 045618 232 EIKAEEKSLFLDIACFFNG-QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR 283 (349)
Q Consensus 232 ~L~~~~~~~f~~la~fp~~-~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~ 283 (349)
.|+.....++.++.-.|++ .+...+...+... -.....++.|.+++||....
T Consensus 2 glt~~q~~vL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 2 GLTPSQFRVLMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp TSTHHHHHHHHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred ccCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 3566777788888888887 8999999999888 78888999999999999753
No 240
>COG1386 scpB Chromosome segregation and condensation protein B [DNA replication, recombination and repair]
Probab=62.98 E-value=89 Score=26.29 Aligned_cols=60 Identities=8% Similarity=0.102 Sum_probs=41.6
Q ss_pred CChhHHHHHHHhcccCCCCCHHHHHHHhcccccHHHhHHHHhhCcceEEcC----CCe---EEecHHHHH
Q 045618 233 IKAEEKSLFLDIACFFNGQDKDSVLKMIGDSSFAHYGLNVLVDKSLVTVSR----GNQ---LQMHDLLQE 295 (349)
Q Consensus 233 L~~~~~~~f~~la~fp~~~~~~~l~~~~~~~~~~~~~l~~L~~~sLl~~~~----~~~---~~mH~lv~~ 295 (349)
|+...-..+.-+|+. +++++..+..+-+. .+...++.|..++||.... .|+ |..-+...+
T Consensus 90 LSraalEtLAiIAY~-QPiTR~eI~~iRGv--~~~~~i~~L~e~glI~~~g~~~~~Grp~ly~tT~~Fl~ 156 (184)
T COG1386 90 LSRAALETLAIIAYK-QPVTRSEIEEIRGV--AVSQVISTLLERGLIREVGRRDTPGRPYLYGTTEKFLD 156 (184)
T ss_pred ccHHHHHHHHHHHHc-CCccHHHHHHHhCc--cHHHHHHHHHHCCCeEecCCCCCCCCceeeeccHHHHH
Confidence 555555566666655 55999998888877 4556899999999999664 453 555444333
No 241
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=62.93 E-value=16 Score=36.53 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=29.5
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCCCCCCcEEEEEeCcchhhcccCcccEEEc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLERFGPGSRIIVTTRDRRVLDNFGVGNIYKV 148 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~~~~~~~l 148 (349)
.+.+.+-.++=+++||..-. ....+.+...+....++..+|+.|.+...... ...++.+
T Consensus 479 aLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~--~D~ii~l 540 (571)
T TIGR02203 479 AIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEK--ADRIVVM 540 (571)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHh--CCEEEEE
Confidence 55556666777889999852 22223333322222334445555554444433 3445555
No 242
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=62.88 E-value=25 Score=28.02 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=28.7
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+.+.+..+.-++++|+... ......+...+... +..||++|.+.....
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 45666667778899999853 33333333333221 346888887765443
No 243
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=62.85 E-value=9.3 Score=35.85 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=31.7
Q ss_pred CCHHHHHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEe
Q 045618 83 PNLPEYVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTT 131 (349)
Q Consensus 83 ~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTT 131 (349)
.+..+.++..|+...-.+++..+.+.+.....+.. ...++.++||
T Consensus 199 ~~~~~~l~~aLR~~Pd~i~vGEiRd~et~~~al~a----a~tGh~v~tT 243 (358)
T TIGR02524 199 NNFAAGVRNALRRKPHAILVGEARDAETISAALEA----ALTGHPVYTT 243 (358)
T ss_pred cCHHHHHHHHhccCCCEEeeeeeCCHHHHHHHHHH----HHcCCcEEEe
Confidence 45666888999999999999999988877644443 2233445555
No 244
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=62.75 E-value=3.5 Score=37.00 Aligned_cols=12 Identities=25% Similarity=0.091 Sum_probs=10.0
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+=||+||||.+.
T Consensus 8 ~KGGVGKTT~~~ 19 (274)
T PRK13235 8 GKGGIGKSTTTQ 19 (274)
T ss_pred CCCCccHHHHHH
Confidence 359999999876
No 245
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=62.67 E-value=3.6 Score=36.91 Aligned_cols=11 Identities=27% Similarity=0.133 Sum_probs=9.7
Q ss_pred CCCchhhHHHH
Q 045618 19 SCGIVKIRRCL 29 (349)
Q Consensus 19 ~gGiGKT~la~ 29 (349)
=||+||||.|.
T Consensus 10 KGGVGKTT~a~ 20 (275)
T PRK13233 10 KGGIGKSTTTQ 20 (275)
T ss_pred CCCCcHHHHHH
Confidence 49999999876
No 246
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=62.67 E-value=27 Score=33.55 Aligned_cols=14 Identities=14% Similarity=-0.066 Sum_probs=12.1
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|++|.||||++.
T Consensus 228 lvGptGvGKTTtaa 241 (432)
T PRK12724 228 FVGPTGSGKTTSIA 241 (432)
T ss_pred EECCCCCCHHHHHH
Confidence 56789999999987
No 247
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=62.37 E-value=38 Score=35.78 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=26.8
Q ss_pred HHHHhCCCceEEEEecCCCc-----hhHHHHHcccCCCCCCcEEEEEeCcchh
Q 045618 89 VRERLRRTKVLIVLDDVNKV-----GQLEYLIGGLERFGPGSRIIVTTRDRRV 136 (349)
Q Consensus 89 l~~~L~~~~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~IlvTTR~~~~ 136 (349)
-+..+....++|++|+|+-. ..|..+.+... .....|+.|--+...
T Consensus 421 ~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~--ks~~Piv~~cndr~~ 471 (871)
T KOG1968|consen 421 NRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCK--KSSRPLVCTCNDRNL 471 (871)
T ss_pred cccccccceeEEEEeccccccchhhhhHHHHHHHHH--hccCCeEEEecCCCC
Confidence 34456677889999999733 34666554433 122345555555443
No 248
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=62.33 E-value=3.1 Score=35.16 Aligned_cols=18 Identities=17% Similarity=-0.040 Sum_probs=14.7
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
+..|++|-||||+|....
T Consensus 3 gI~G~sgSGKTTla~~L~ 20 (194)
T PF00485_consen 3 GIAGPSGSGKTTLAKRLA 20 (194)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 467889999999998443
No 249
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=62.29 E-value=14 Score=33.22 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=36.2
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhCC
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPEYVRERLRR 95 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~ 95 (349)
.+|.||.||+++++.+--.+ -.+.| -+.+++..+..+.-.++-.- ..+..+++
T Consensus 36 LvG~~GsGr~sl~rLaa~i~----~~~~~---------~i~~~~~y~~~~f~~dLk~~--------------~~~ag~~~ 88 (268)
T PF12780_consen 36 LVGVGGSGRQSLARLAAFIC----GYEVF---------QIEITKGYSIKDFKEDLKKA--------------LQKAGIKG 88 (268)
T ss_dssp EECTTTSCHHHHHHHHHHHT----TEEEE----------TTTSTTTHHHHHHHHHHHH--------------HHHHHCS-
T ss_pred EecCCCccHHHHHHHHHHHh----ccceE---------EEEeeCCcCHHHHHHHHHHH--------------HHHHhccC
Confidence 46779999999998542211 11111 12223333444332222111 34456778
Q ss_pred CceEEEEecCC--CchhHHHH
Q 045618 96 TKVLIVLDDVN--KVGQLEYL 114 (349)
Q Consensus 96 ~~~LlVlDdv~--~~~~~~~l 114 (349)
++..+++.|-. +..-++.+
T Consensus 89 ~~~vfll~d~qi~~~~fLe~i 109 (268)
T PF12780_consen 89 KPTVFLLTDSQIVDESFLEDI 109 (268)
T ss_dssp S-EEEEEECCCSSSCHHHHHH
T ss_pred CCeEEEecCcccchHhHHHHH
Confidence 88999998865 33334444
No 250
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=62.03 E-value=3.9 Score=33.67 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=10.9
Q ss_pred CCCCCchhhHHHH
Q 045618 17 ATSCGIVKIRRCL 29 (349)
Q Consensus 17 ~~~gGiGKT~la~ 29 (349)
.+-||+||||+|.
T Consensus 6 ~~kgG~GKtt~a~ 18 (179)
T cd02036 6 SGKGGVGKTTTTA 18 (179)
T ss_pred eCCCCCCHHHHHH
Confidence 3459999999987
No 251
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=62.02 E-value=55 Score=23.33 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=50.2
Q ss_pred HHHHHhcccCCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC-CCeEEecHHHHHHHHHHHhhh
Q 045618 239 SLFLDIACFFNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR-GNQLQMHDLLQEMGREIVRQE 304 (349)
Q Consensus 239 ~~f~~la~fp~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~-~~~~~mH~lv~~~a~~~~~~e 304 (349)
.++.+++--+++.....+....... -.....+..|.+.+++.... ++.|++-+-+.+++.......
T Consensus 9 ~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~~~~~~~~~~~~ 76 (91)
T smart00346 9 AVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKVLELGQSYLSSL 76 (91)
T ss_pred HHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCCCCceeecHHHHHHHHHHHhcC
Confidence 3444555444558888888888776 67888899999999999864 678999988888887766544
No 252
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=61.80 E-value=3.7 Score=36.82 Aligned_cols=12 Identities=25% Similarity=0.091 Sum_probs=10.2
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+=||+||||.+.
T Consensus 8 gKGGVGKTT~a~ 19 (273)
T PRK13232 8 GKGGIGKSTTTQ 19 (273)
T ss_pred CCCCCcHHHHHH
Confidence 459999999876
No 253
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=61.64 E-value=3.5 Score=31.71 Aligned_cols=15 Identities=13% Similarity=-0.206 Sum_probs=12.1
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|+-|.||||+|+.
T Consensus 3 i~G~~GsGKtTia~~ 17 (129)
T PF13238_consen 3 ISGIPGSGKTTIAKE 17 (129)
T ss_dssp EEESTTSSHHHHHHH
T ss_pred EECCCCCCHHHHHHH
Confidence 346779999999983
No 254
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=61.52 E-value=47 Score=29.07 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=35.8
Q ss_pred HHHHHhCCCceEEEEecCCCchhHHHH------HcccCCCCCCcEEEEEeCcchhhcccCccc
Q 045618 88 YVRERLRRTKVLIVLDDVNKVGQLEYL------IGGLERFGPGSRIIVTTRDRRVLDNFGVGN 144 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~~~~~~l------~~~~~~~~~~~~IlvTTR~~~~~~~~~~~~ 144 (349)
.+.+.+--+.-|.|||..++--+++.+ ...+. .+++.+|+.|..+.++....+..
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCE
Confidence 566666677889999999865443332 22333 34667888888887777764433
No 255
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=61.46 E-value=83 Score=28.59 Aligned_cols=57 Identities=9% Similarity=0.099 Sum_probs=35.3
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhcccC-cccEEEcCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNFG-VGNIYKVNGL 151 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~~-~~~~~~l~~L 151 (349)
++.-++|+|+++.. +....++..+..-.+++.+|++|.+++ +...+. -...+.++++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 45668899999854 456777766655556666666666643 443432 2346667665
No 256
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=61.33 E-value=3.8 Score=36.88 Aligned_cols=12 Identities=25% Similarity=0.108 Sum_probs=10.2
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+=||+||||.+.
T Consensus 8 gKGGVGKTT~a~ 19 (279)
T PRK13230 8 GKGGIGKSTTVC 19 (279)
T ss_pred CCCCCcHHHHHH
Confidence 459999999876
No 257
>PRK05480 uridine/cytidine kinase; Provisional
Probab=61.30 E-value=4 Score=34.89 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=15.4
Q ss_pred hcccCCCCCchhhHHHHHHh
Q 045618 13 ELNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~~~f 32 (349)
.....|+.|.|||||+....
T Consensus 8 iI~I~G~sGsGKTTl~~~l~ 27 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIY 27 (209)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 34567889999999998443
No 258
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=61.28 E-value=18 Score=30.20 Aligned_cols=26 Identities=12% Similarity=-0.106 Sum_probs=17.1
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeec
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLS 41 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~ 41 (349)
..|+.|-||||+|+..-...--.+++
T Consensus 5 ilG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 5 ILGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 46788999999998544332223444
No 259
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=61.25 E-value=48 Score=34.00 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=66.3
Q ss_pred CCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhCC-
Q 045618 17 ATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPEYVRERLRR- 95 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~- 95 (349)
+||=|+|||.+++..... +...| +|++-. .+.+ ..++-|....=+..+.-++.++|+.
T Consensus 444 ~GPPGVGKTSI~kSIA~A-----LnRkF----------fRfSvG-G~tD-----vAeIkGHRRTYVGAMPGkiIq~LK~v 502 (906)
T KOG2004|consen 444 VGPPGVGKTSIAKSIARA-----LNRKF----------FRFSVG-GMTD-----VAEIKGHRRTYVGAMPGKIIQCLKKV 502 (906)
T ss_pred eCCCCCCcccHHHHHHHH-----hCCce----------EEEecc-cccc-----HHhhcccceeeeccCChHHHHHHHhh
Confidence 455699999999854332 12233 222221 0000 1233344444455555577777776
Q ss_pred --CceEEEEecCCCch------hHHHHHcccCCCCC-------------CcEEEE-EeCcc-hh-hcc-cCcccEEEcCC
Q 045618 96 --TKVLIVLDDVNKVG------QLEYLIGGLERFGP-------------GSRIIV-TTRDR-RV-LDN-FGVGNIYKVNG 150 (349)
Q Consensus 96 --~~~LlVlDdv~~~~------~~~~l~~~~~~~~~-------------~~~Ilv-TTR~~-~~-~~~-~~~~~~~~l~~ 150 (349)
.+=|+.||.|+... -..+|+..+.+-.+ =|+|++ .|=|. +. ... ..-..++++.+
T Consensus 503 ~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsG 582 (906)
T KOG2004|consen 503 KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSG 582 (906)
T ss_pred CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccC
Confidence 46699999997321 12222222211111 244443 33221 11 111 12345899999
Q ss_pred CChHhHHHHHHHhhcc
Q 045618 151 LKYREALELFCNCAFK 166 (349)
Q Consensus 151 L~~~ea~~L~~~~a~~ 166 (349)
...+|-..+-.++...
T Consensus 583 Yv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 583 YVAEEKVKIAERYLIP 598 (906)
T ss_pred ccHHHHHHHHHHhhhh
Confidence 9999988887776643
No 260
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=61.07 E-value=18 Score=33.34 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=40.7
Q ss_pred CCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhCCC
Q 045618 17 ATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPEYVRERLRRT 96 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~~ 96 (349)
-||-|-|||+|.+...+ ..-+...+.|.++ ..+++.. .++-+++.+++.-.+..+-+++.+.++++
T Consensus 183 hGPPGTGKTSLCKaLaQ-kLSIR~~~~y~~~-----~liEins--------hsLFSKWFsESgKlV~kmF~kI~ELv~d~ 248 (423)
T KOG0744|consen 183 HGPPGTGKTSLCKALAQ-KLSIRTNDRYYKG-----QLIEINS--------HSLFSKWFSESGKLVAKMFQKIQELVEDR 248 (423)
T ss_pred eCCCCCChhHHHHHHHH-hheeeecCccccc-----eEEEEeh--------hHHHHHHHhhhhhHHHHHHHHHHHHHhCC
Confidence 35679999999874322 2223333344222 1223221 12344444444433444445777788876
Q ss_pred ce--EEEEecCCC
Q 045618 97 KV--LIVLDDVNK 107 (349)
Q Consensus 97 ~~--LlVlDdv~~ 107 (349)
.. ++.+|.|+.
T Consensus 249 ~~lVfvLIDEVES 261 (423)
T KOG0744|consen 249 GNLVFVLIDEVES 261 (423)
T ss_pred CcEEEEEeHHHHH
Confidence 54 556788853
No 261
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=60.68 E-value=4 Score=35.98 Aligned_cols=10 Identities=20% Similarity=0.099 Sum_probs=9.2
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||++.
T Consensus 11 GGvG~TTltA 20 (243)
T PF06564_consen 11 GGVGKTTLTA 20 (243)
T ss_pred CCCCHHHHHH
Confidence 9999999965
No 262
>PRK10037 cell division protein; Provisional
Probab=60.52 E-value=4 Score=36.06 Aligned_cols=10 Identities=10% Similarity=-0.011 Sum_probs=9.2
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||++.
T Consensus 11 GGvGKTT~a~ 20 (250)
T PRK10037 11 GGVGTTSITA 20 (250)
T ss_pred CCccHHHHHH
Confidence 9999999876
No 263
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.38 E-value=1.1e+02 Score=31.89 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=81.6
Q ss_pred CCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhCCC
Q 045618 17 ATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPEYVRERLRRT 96 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~~ 96 (349)
+||=|-|||-+|+.+.--+.- .| +.+- .++ ++....|.+. +++.+-..+.-..+
T Consensus 711 YGPPGTGKTLlAKAVATEcsL-----~F----------lSVK---GPE-----LLNMYVGqSE---~NVR~VFerAR~A~ 764 (953)
T KOG0736|consen 711 YGPPGTGKTLLAKAVATECSL-----NF----------LSVK---GPE-----LLNMYVGQSE---ENVREVFERARSAA 764 (953)
T ss_pred ECCCCCchHHHHHHHHhhcee-----eE----------Eeec---CHH-----HHHHHhcchH---HHHHHHHHHhhccC
Confidence 456699999999966433221 12 2222 222 4445455433 33343333444458
Q ss_pred ceEEEEecCCCc---------------hhHHHHHccc---CC-CCCCcEEEEEeCcchhhcc--cC---cccEEEcCCCC
Q 045618 97 KVLIVLDDVNKV---------------GQLEYLIGGL---ER-FGPGSRIIVTTRDRRVLDN--FG---VGNIYKVNGLK 152 (349)
Q Consensus 97 ~~LlVlDdv~~~---------------~~~~~l~~~~---~~-~~~~~~IlvTTR~~~~~~~--~~---~~~~~~l~~L~ 152 (349)
.|.|.+|.+++. ..+.+++..+ .. ...+.-||=.|..+++... +. ....+.|++-+
T Consensus 765 PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~ 844 (953)
T KOG0736|consen 765 PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNE 844 (953)
T ss_pred CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCc
Confidence 999999999742 1233443333 22 2334456666666665432 12 33467777777
Q ss_pred hHhHHH-HHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhccCCHHHHHHHHHH
Q 045618 153 YREALE-LFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQKSKLDWESALDN 213 (349)
Q Consensus 153 ~~ea~~-L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~~~~~~~~~l~~ 213 (349)
.+++.. +++... +.-...+. -...+|+++|.-. ..|+-|..-....|..++.+
T Consensus 845 d~esk~~vL~AlT-rkFkLded--VdL~eiAk~cp~~-----~TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 845 DAESKLRVLEALT-RKFKLDED--VDLVEIAKKCPPN-----MTGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred cHHHHHHHHHHHH-HHccCCCC--cCHHHHHhhCCcC-----CchhHHHHHHHHHHHHHHHH
Confidence 666643 333222 11111111 1145788888543 23444444334555555443
No 264
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=60.37 E-value=4.2 Score=36.17 Aligned_cols=11 Identities=27% Similarity=0.133 Sum_probs=9.8
Q ss_pred CCCchhhHHHH
Q 045618 19 SCGIVKIRRCL 29 (349)
Q Consensus 19 ~gGiGKT~la~ 29 (349)
=||+||||++.
T Consensus 10 KGGvGKTT~a~ 20 (264)
T PRK13231 10 KGGIGKSTTVS 20 (264)
T ss_pred CCCCcHHHHHH
Confidence 49999999986
No 265
>PRK08233 hypothetical protein; Provisional
Probab=60.14 E-value=4.5 Score=33.45 Aligned_cols=17 Identities=18% Similarity=-0.076 Sum_probs=13.4
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
...|+.|-||||+|...
T Consensus 7 ~I~G~~GsGKtTla~~L 23 (182)
T PRK08233 7 TIAAVSGGGKTTLTERL 23 (182)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 35677899999999843
No 266
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=59.94 E-value=16 Score=31.02 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=12.2
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|+.|.|||+++..
T Consensus 17 i~G~~GsGKT~l~~~ 31 (209)
T TIGR02237 17 IYGPPGSGKTNICMI 31 (209)
T ss_pred EECCCCCCHHHHHHH
Confidence 456689999999873
No 267
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=59.86 E-value=1.3e+02 Score=30.90 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=55.0
Q ss_pred CCchhhHHHHHHhhhhcceeeccccccccccCcceeeh--hhhccHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhC---
Q 045618 20 CGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRE--SRSIMNQRVSNKFLGWLVEQEQIRTPNLPEYVRERLR--- 94 (349)
Q Consensus 20 gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~--~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~--- 94 (349)
=|.|||+.+..+-..-.-..-. ....-+.++.+ .+-..+.++...|...+.|........++. |..+..
T Consensus 431 PGtGKT~tV~~Vm~~Lq~~s~~-----~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~-L~~~f~~~k 504 (767)
T KOG1514|consen 431 PGTGKTATVLEVMKELQTSSAQ-----KELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEA-LNFRFTVPK 504 (767)
T ss_pred CCCCceehHHHHHHHHHHHHhh-----cCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHH-HHHhhccCC
Confidence 4899999988554321100000 01111122222 222358889999999987655544444333 333333
Q ss_pred --CCceEEEEecCCC-----chhHHHHHcccCCCCCCcEEEEEe
Q 045618 95 --RTKVLIVLDDVNK-----VGQLEYLIGGLERFGPGSRIIVTT 131 (349)
Q Consensus 95 --~~~~LlVlDdv~~-----~~~~~~l~~~~~~~~~~~~IlvTT 131 (349)
.+.+++++|+++. .+.+..|..-+ ..++++++|-+
T Consensus 505 ~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp--t~~~sKLvvi~ 546 (767)
T KOG1514|consen 505 PKRSTTVVLIDELDILVTRSQDVLYNIFDWP--TLKNSKLVVIA 546 (767)
T ss_pred CCCCCEEEEeccHHHHhcccHHHHHHHhcCC--cCCCCceEEEE
Confidence 3578999999863 23344443211 14577766654
No 268
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=59.81 E-value=17 Score=32.24 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=35.4
Q ss_pred HHHHHhCCCceEEEEecCCC------chhHHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK------VGQLEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~------~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+.+.|....=||+||.--. ...+-.++..+.. .|+.||+.|-+-....
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhH
Confidence 88899999999999998642 2345555555543 3888999998875443
No 269
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=59.81 E-value=86 Score=31.78 Aligned_cols=71 Identities=20% Similarity=0.340 Sum_probs=40.3
Q ss_pred CceEEEEecCCCc-------------hhHHHHHcccCCCC--CCcEEEEEeCcchhhcc--cC---cccEEEcCCCChHh
Q 045618 96 TKVLIVLDDVNKV-------------GQLEYLIGGLERFG--PGSRIIVTTRDRRVLDN--FG---VGNIYKVNGLKYRE 155 (349)
Q Consensus 96 ~~~LlVlDdv~~~-------------~~~~~l~~~~~~~~--~~~~IlvTTR~~~~~~~--~~---~~~~~~l~~L~~~e 155 (349)
..+++.||.++.. ..+..++..+.-.. .+.-||-.|..++.... +. ....+.++..+.+.
T Consensus 527 aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~a 606 (693)
T KOG0730|consen 527 APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEA 606 (693)
T ss_pred CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHH
Confidence 5688999988632 12344444332111 23334434433433221 22 34578888888888
Q ss_pred HHHHHHHhhcc
Q 045618 156 ALELFCNCAFK 166 (349)
Q Consensus 156 a~~L~~~~a~~ 166 (349)
-.++|+.++-+
T Consensus 607 R~~Ilk~~~kk 617 (693)
T KOG0730|consen 607 RLEILKQCAKK 617 (693)
T ss_pred HHHHHHHHHhc
Confidence 89999998833
No 270
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=59.42 E-value=4.5 Score=34.22 Aligned_cols=17 Identities=18% Similarity=0.012 Sum_probs=14.2
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
+..|+.|-||||++...
T Consensus 3 gi~G~~GsGKSTl~~~l 19 (198)
T cd02023 3 GIAGGSGSGKTTVAEEI 19 (198)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 46788999999999844
No 271
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=59.37 E-value=27 Score=33.61 Aligned_cols=15 Identities=13% Similarity=0.054 Sum_probs=12.3
Q ss_pred ccCCCCCchhhHHHH
Q 045618 15 NRATSCGIVKIRRCL 29 (349)
Q Consensus 15 ~~~~~gGiGKT~la~ 29 (349)
..+|++|+||||++.
T Consensus 225 ~~vGptGvGKTTt~~ 239 (424)
T PRK05703 225 ALVGPTGVGKTTTLA 239 (424)
T ss_pred EEECCCCCCHHHHHH
Confidence 366789999999866
No 272
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=59.25 E-value=4.5 Score=36.23 Aligned_cols=13 Identities=23% Similarity=0.028 Sum_probs=10.9
Q ss_pred CCCCCchhhHHHH
Q 045618 17 ATSCGIVKIRRCL 29 (349)
Q Consensus 17 ~~~gGiGKT~la~ 29 (349)
++=||+||||++.
T Consensus 6 ~gKGGVGKTT~a~ 18 (275)
T TIGR01287 6 YGKGGIGKSTTTQ 18 (275)
T ss_pred eCCCcCcHHHHHH
Confidence 3569999999976
No 273
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=59.18 E-value=4.6 Score=34.52 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=15.0
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
....|+.|.||||+++...
T Consensus 9 i~I~G~sGsGKSTl~~~l~ 27 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIY 27 (207)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4467889999999998443
No 274
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=58.63 E-value=4.7 Score=35.99 Aligned_cols=11 Identities=27% Similarity=0.136 Sum_probs=9.5
Q ss_pred CCCchhhHHHH
Q 045618 19 SCGIVKIRRCL 29 (349)
Q Consensus 19 ~gGiGKT~la~ 29 (349)
=||+||||.+.
T Consensus 10 KGGVGKTT~~~ 20 (270)
T PRK13185 10 KGGIGKSTTSS 20 (270)
T ss_pred CCCCCHHHHHH
Confidence 49999999876
No 275
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=58.62 E-value=12 Score=32.11 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=11.9
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|+.|.|||+++..
T Consensus 24 I~G~~GsGKT~l~~~ 38 (226)
T cd01393 24 IFGEFGSGKTQLCLQ 38 (226)
T ss_pred EeCCCCCChhHHHHH
Confidence 455679999999874
No 276
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=58.00 E-value=64 Score=31.98 Aligned_cols=15 Identities=13% Similarity=-0.062 Sum_probs=12.8
Q ss_pred ccCCCCCchhhHHHH
Q 045618 15 NRATSCGIVKIRRCL 29 (349)
Q Consensus 15 ~~~~~gGiGKT~la~ 29 (349)
-..||.|.||||.++
T Consensus 49 lLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 49 LLTGPSGCGKTTTVK 63 (519)
T ss_pred EEECCCCCCHHHHHH
Confidence 357889999999987
No 277
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=57.67 E-value=5.2 Score=30.33 Aligned_cols=17 Identities=12% Similarity=-0.019 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.+...
T Consensus 4 V~G~~g~GKTsLi~~l~ 20 (119)
T PF08477_consen 4 VLGDSGVGKTSLIRRLC 20 (119)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHh
Confidence 46788999999988443
No 278
>PRK13768 GTPase; Provisional
Probab=57.09 E-value=5.4 Score=35.40 Aligned_cols=14 Identities=14% Similarity=-0.102 Sum_probs=11.9
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
..|+||.||||++.
T Consensus 7 v~G~~G~GKTt~~~ 20 (253)
T PRK13768 7 FLGTAGSGKTTLTK 20 (253)
T ss_pred EECCCCccHHHHHH
Confidence 46789999999876
No 279
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=57.05 E-value=5.1 Score=32.91 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=10.3
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||.||||+|.
T Consensus 7 ~kgG~GKTt~a~ 18 (169)
T cd02037 7 GKGGVGKSTVAV 18 (169)
T ss_pred CCCcCChhHHHH
Confidence 449999999977
No 280
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=56.96 E-value=4.9 Score=35.18 Aligned_cols=12 Identities=17% Similarity=-0.053 Sum_probs=10.1
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 8 ~KGGvGKTt~a~ 19 (251)
T TIGR01969 8 GKGGTGKTTITA 19 (251)
T ss_pred CCCCCcHHHHHH
Confidence 349999999986
No 281
>PTZ00301 uridine kinase; Provisional
Probab=56.78 E-value=5.4 Score=34.37 Aligned_cols=17 Identities=12% Similarity=-0.015 Sum_probs=14.2
Q ss_pred cccCCCCCchhhHHHHH
Q 045618 14 LNRATSCGIVKIRRCLM 30 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~ 30 (349)
.+..|++|-||||+|..
T Consensus 6 IgIaG~SgSGKTTla~~ 22 (210)
T PTZ00301 6 IGISGASGSGKSSLSTN 22 (210)
T ss_pred EEEECCCcCCHHHHHHH
Confidence 45788899999999973
No 282
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=56.77 E-value=5 Score=35.77 Aligned_cols=12 Identities=25% Similarity=0.094 Sum_probs=10.0
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+=||+||||.+.
T Consensus 7 gKGGvGKTT~a~ 18 (267)
T cd02032 7 GKGGIGKSTTSS 18 (267)
T ss_pred cCCCCCHHHHHH
Confidence 349999999876
No 283
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=56.39 E-value=15 Score=34.74 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=28.5
Q ss_pred CCHHHHHHHHhCCCceEEEEecCCCchhHHHHHcc
Q 045618 83 PNLPEYVRERLRRTKVLIVLDDVNKVGQLEYLIGG 117 (349)
Q Consensus 83 ~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~ 117 (349)
.+..+.++..|+...=.|+++.+.+.+.++..+..
T Consensus 212 ~~~~~~l~~aLR~~PD~I~vGEiRd~et~~~al~a 246 (372)
T TIGR02525 212 DSFANGIRLALRRAPKIIGVGEIRDLETFQAAVLA 246 (372)
T ss_pred cCHHHHHHHhhccCCCEEeeCCCCCHHHHHHHHHH
Confidence 45667899999999999999999999887754444
No 284
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.30 E-value=25 Score=34.79 Aligned_cols=14 Identities=14% Similarity=-0.019 Sum_probs=11.8
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|++|.||||++.
T Consensus 355 LVGPtGvGKTTtaa 368 (559)
T PRK12727 355 LVGPTGAGKTTTIA 368 (559)
T ss_pred EECCCCCCHHHHHH
Confidence 56779999999976
No 285
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=56.20 E-value=22 Score=35.13 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=14.5
Q ss_pred HHHHHhCCCceEEEEecCC
Q 045618 88 YVRERLRRTKVLIVLDDVN 106 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~ 106 (349)
.+.+.+-.++=++|||+.-
T Consensus 480 aiARall~~~~iliLDE~T 498 (529)
T TIGR02868 480 ALARALLADAPILLLDEPT 498 (529)
T ss_pred HHHHHHhcCCCEEEEeCCc
Confidence 5666666677789999985
No 286
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=56.03 E-value=6.5 Score=28.14 Aligned_cols=14 Identities=14% Similarity=0.034 Sum_probs=11.0
Q ss_pred CCCCCchhhHHHHH
Q 045618 17 ATSCGIVKIRRCLM 30 (349)
Q Consensus 17 ~~~gGiGKT~la~~ 30 (349)
.+.+|.|||+++..
T Consensus 5 ~g~~G~Gktt~~~~ 18 (99)
T cd01983 5 TGKGGVGKTTLAAN 18 (99)
T ss_pred ECCCCCCHHHHHHH
Confidence 35579999999873
No 287
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=55.95 E-value=6.9 Score=32.48 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=13.8
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
-.||.|+|||.+|+...
T Consensus 8 l~GpsGvGKT~la~~la 24 (171)
T PF07724_consen 8 LAGPSGVGKTELAKALA 24 (171)
T ss_dssp EESSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 46889999999998543
No 288
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=55.92 E-value=23 Score=34.82 Aligned_cols=14 Identities=43% Similarity=0.593 Sum_probs=12.0
Q ss_pred CCceEEEEecCCCc
Q 045618 95 RTKVLIVLDDVNKV 108 (349)
Q Consensus 95 ~~~~LlVlDdv~~~ 108 (349)
++++|+|+||+-..
T Consensus 253 G~~VLli~DdlTr~ 266 (502)
T PRK09281 253 GKDALIVYDDLSKQ 266 (502)
T ss_pred CCCEEEEecCchHH
Confidence 78999999999643
No 289
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=55.59 E-value=5.4 Score=36.23 Aligned_cols=13 Identities=23% Similarity=0.046 Sum_probs=10.7
Q ss_pred CCCCCchhhHHHH
Q 045618 17 ATSCGIVKIRRCL 29 (349)
Q Consensus 17 ~~~gGiGKT~la~ 29 (349)
.+=||+||||.+.
T Consensus 6 ~gKGGVGKTTta~ 18 (290)
T CHL00072 6 YGKGGIGKSTTSC 18 (290)
T ss_pred ECCCCCcHHHHHH
Confidence 4459999999976
No 290
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=55.55 E-value=16 Score=32.57 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=32.7
Q ss_pred HHHHHhCCCceEEEEecCCCc------hhHHHHHcccCCCCCCcEEEEEeCcchhhccc
Q 045618 88 YVRERLRRTKVLIVLDDVNKV------GQLEYLIGGLERFGPGSRIIVTTRDRRVLDNF 140 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~------~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~ 140 (349)
.+.+.|.-+.-|+|.|..-+. .+.-.++..+.. ..|-..+..|-+-.+...+
T Consensus 119 ~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred HHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 788889999999999997543 223333332221 2355677777776665554
No 291
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=55.26 E-value=68 Score=26.00 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=54.1
Q ss_pred CCceEEEEecC------CCchhHHHHHcccCCCCCCcEEEEEeC-cch----hhcccC-cccEEEcCCCChHhHHHHHHH
Q 045618 95 RTKVLIVLDDV------NKVGQLEYLIGGLERFGPGSRIIVTTR-DRR----VLDNFG-VGNIYKVNGLKYREALELFCN 162 (349)
Q Consensus 95 ~~~~LlVlDdv------~~~~~~~~l~~~~~~~~~~~~IlvTTR-~~~----~~~~~~-~~~~~~l~~L~~~ea~~L~~~ 162 (349)
+.+-++|+.+. .....++.+...+....+++.+|+.+. ..+ +...+. ....+...++...+....+..
T Consensus 56 ~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~ 135 (172)
T PF06144_consen 56 GDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKE 135 (172)
T ss_dssp SSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHH
T ss_pred CCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHH
Confidence 35778888887 245667888777766677888888887 222 122222 334677788888888888777
Q ss_pred hhccCCCCChhHHHHHHHHHHHcCCCchHHH
Q 045618 163 CAFKENHCPEDLLVHSKRILDYANGNPLAVR 193 (349)
Q Consensus 163 ~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~ 193 (349)
.+-.... .-.++.+..+++.+++.+..+.
T Consensus 136 ~~~~~g~--~i~~~a~~~L~~~~~~d~~~l~ 164 (172)
T PF06144_consen 136 RAKKNGL--KIDPDAAQYLIERVGNDLSLLQ 164 (172)
T ss_dssp HHHHTT---EE-HHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcCC--CCCHHHHHHHHHHhChHHHHHH
Confidence 7633321 1234567778888887776554
No 292
>PRK00279 adk adenylate kinase; Reviewed
Probab=55.26 E-value=54 Score=28.01 Aligned_cols=25 Identities=8% Similarity=-0.068 Sum_probs=16.3
Q ss_pred cCCCCCchhhHHHHHHhhhhcceee
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECL 40 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~ 40 (349)
..|+-|.||||+|+..-....+.++
T Consensus 5 v~G~pGsGKsT~a~~la~~~~~~~i 29 (215)
T PRK00279 5 LLGPPGAGKGTQAKFIAEKYGIPHI 29 (215)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4567899999999854433334333
No 293
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=55.24 E-value=18 Score=33.66 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=32.9
Q ss_pred CCHHHHHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCc
Q 045618 83 PNLPEYVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRD 133 (349)
Q Consensus 83 ~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~ 133 (349)
.+..+.++..|+...=.|++|.+.+.+.+......- ..|..|+.|.-.
T Consensus 182 ~~~~~~l~~~lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha 229 (343)
T TIGR01420 182 LSFANALRAALREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHT 229 (343)
T ss_pred cCHHHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcC
Confidence 456668889999999999999999888766544331 234445555443
No 294
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=54.97 E-value=21 Score=31.89 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=27.0
Q ss_pred CHHHHHHHHhCCCceEEEEecCCCchhHHHHHcc
Q 045618 84 NLPEYVRERLRRTKVLIVLDDVNKVGQLEYLIGG 117 (349)
Q Consensus 84 ~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~ 117 (349)
+..+.++..|+...=.++++.+.+.+....+...
T Consensus 137 ~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 137 TFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred CHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 4566888999988899999999998876655444
No 295
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=54.94 E-value=31 Score=27.11 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=22.7
Q ss_pred CceEEEEecCCCch--hHHHHHcccCC-CCCCcEEEEEeCcc
Q 045618 96 TKVLIVLDDVNKVG--QLEYLIGGLER-FGPGSRIIVTTRDR 134 (349)
Q Consensus 96 ~~~LlVlDdv~~~~--~~~~l~~~~~~-~~~~~~IlvTTR~~ 134 (349)
+.--|+|+|++... ....+...+.. ...+.++|.||+..
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 45568899998643 23333333321 14678999998754
No 296
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=54.89 E-value=2.1e+02 Score=27.92 Aligned_cols=57 Identities=9% Similarity=-0.067 Sum_probs=35.4
Q ss_pred ccEEEcCCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhc
Q 045618 143 GNIYKVNGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLR 200 (349)
Q Consensus 143 ~~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~ 200 (349)
...+..+|.+.++-.++|..+.-... ........++-++++|.|.-=.++.+-...+
T Consensus 317 P~~l~F~PYTk~qI~~Il~~rl~~~~-t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 317 PKLLVFPPYTKDQIVEILQQRLSEES-TSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred CceeeecCCCHHHHHHHHHHHHhccc-ccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 45788899999999999998873322 2222334455566666665555544444443
No 297
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=54.70 E-value=6.4 Score=29.65 Aligned_cols=11 Identities=9% Similarity=0.015 Sum_probs=9.6
Q ss_pred CCCchhhHHHH
Q 045618 19 SCGIVKIRRCL 29 (349)
Q Consensus 19 ~gGiGKT~la~ 29 (349)
=||+|||+++.
T Consensus 8 kgg~gkt~~~~ 18 (106)
T cd03111 8 KGGVGATTLAA 18 (106)
T ss_pred CCCCcHHHHHH
Confidence 39999999976
No 298
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=54.69 E-value=45 Score=29.46 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=26.9
Q ss_pred HHHHhCC--CceEEEEecCC---CchhHHHHHcccC---CCCCCcEEEEEeCcch
Q 045618 89 VRERLRR--TKVLIVLDDVN---KVGQLEYLIGGLE---RFGPGSRIIVTTRDRR 135 (349)
Q Consensus 89 l~~~L~~--~~~LlVlDdv~---~~~~~~~l~~~~~---~~~~~~~IlvTTR~~~ 135 (349)
+.+.|+. .|+.|..||.. +....+.+.+.+. ...+...++..|.|+.
T Consensus 130 l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 130 LVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred HHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 4444444 68999999995 3344555555442 2234445555565543
No 299
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=54.48 E-value=23 Score=34.83 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=12.4
Q ss_pred CCCceEEEEecCCCc
Q 045618 94 RRTKVLIVLDDVNKV 108 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~ 108 (349)
.++++|||+||+-..
T Consensus 252 ~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 252 QGQDALIVYDDLSKH 266 (502)
T ss_pred CCCCEEEEecchHHH
Confidence 478999999999643
No 300
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=54.48 E-value=54 Score=27.95 Aligned_cols=45 Identities=13% Similarity=0.202 Sum_probs=28.4
Q ss_pred CCCceEEEEecCCC---chh----HHHHHcccCCCCCCcEEEEEeCcchhhccc
Q 045618 94 RRTKVLIVLDDVNK---VGQ----LEYLIGGLERFGPGSRIIVTTRDRRVLDNF 140 (349)
Q Consensus 94 ~~~~~LlVlDdv~~---~~~----~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~ 140 (349)
..++-|+++|.... ..+ ...+...+. ..++.+|++|-+...+..+
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAIL 157 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHh
Confidence 35688999999842 222 222333332 2378899999988876654
No 301
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=54.34 E-value=44 Score=33.57 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=30.4
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCCCCCCcEEEEEeCcchhhcccCcccEEEc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLERFGPGSRIIVTTRDRRVLDNFGVGNIYKV 148 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~~~~~~~l 148 (349)
.+.+.+-.++=++|||+... ...-+.+...+....++..+|+.|.+...... ..+++.+
T Consensus 481 alARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~--~D~ii~l 542 (588)
T PRK13657 481 AIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRN--ADRILVF 542 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHh--CCEEEEE
Confidence 56666666778899999863 22223332222222334455555555544443 3344444
No 302
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=54.32 E-value=6.2 Score=33.81 Aligned_cols=12 Identities=25% Similarity=0.108 Sum_probs=10.1
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||.+.
T Consensus 7 gKGGvGKTt~~~ 18 (212)
T cd02117 7 GKGGIGKSTTSQ 18 (212)
T ss_pred CCCcCcHHHHHH
Confidence 469999999866
No 303
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=54.10 E-value=19 Score=37.06 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=14.5
Q ss_pred HHHHHhCCCceEEEEecCC
Q 045618 88 YVRERLRRTKVLIVLDDVN 106 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~ 106 (349)
.+.+.+-.+.-++|||+.-
T Consensus 611 alARall~~p~iliLDE~T 629 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPT 629 (694)
T ss_pred HHHHHHhcCCCEEEEeCCC
Confidence 5666666777889999985
No 304
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=53.76 E-value=19 Score=37.87 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=64.1
Q ss_pred HHHHhCCCceEEEEecCCCch---------hHHHHHcccCCCCCCcEEEEEeCcchhhcccCcccEEEcCCCChHhHHHH
Q 045618 89 VRERLRRTKVLIVLDDVNKVG---------QLEYLIGGLERFGPGSRIIVTTRDRRVLDNFGVGNIYKVNGLKYREALEL 159 (349)
Q Consensus 89 l~~~L~~~~~LlVlDdv~~~~---------~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~~~~~~~l~~L~~~ea~~L 159 (349)
..+.++..++|+.+|.++... .+..+.+. -+.+++|+|+|....-.....-..+++..+.++.-...
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~ 373 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQF 373 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHH
Confidence 358999999999999997532 23444444 46889999997654332222222344444443322211
Q ss_pred HH--------HhhccCCCCC--hhHHHH---HHHHHHHcCCCchHHHHHhHHhcc------CCHHHHHHHHHHhhc
Q 045618 160 FC--------NCAFKENHCP--EDLLVH---SKRILDYANGNPLAVRVLGSFLRQ------KSKLDWESALDNLKR 216 (349)
Q Consensus 160 ~~--------~~a~~~~~~~--~~~~~~---~~~i~~~c~glPLAl~~~a~~l~~------~~~~~~~~~l~~l~~ 216 (349)
.. ...++..... .....+ ...-++.....|+.|.+.+..-.. ...+-++.+++.+-.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 374 ILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 11 1111111111 000111 122234447789999888844431 235666666666533
No 305
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=53.68 E-value=6.8 Score=33.99 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=14.0
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
+..|+.|-||||+|...
T Consensus 3 gI~G~sGSGKTTla~~L 19 (220)
T cd02025 3 GIAGSVAVGKSTTARVL 19 (220)
T ss_pred EeeCCCCCCHHHHHHHH
Confidence 46788999999999843
No 306
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=53.40 E-value=1.4e+02 Score=29.71 Aligned_cols=17 Identities=12% Similarity=-0.074 Sum_probs=13.1
Q ss_pred CCCCCchhhHHHHHHhh
Q 045618 17 ATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~ 33 (349)
.|.-|.|||++|+..+.
T Consensus 225 ~Ge~GtGK~~lA~~ih~ 241 (534)
T TIGR01817 225 RGESGTGKELIAKAIHY 241 (534)
T ss_pred ECCCCccHHHHHHHHHH
Confidence 34479999999996554
No 307
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=53.32 E-value=17 Score=36.50 Aligned_cols=59 Identities=14% Similarity=0.258 Sum_probs=29.4
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCCCCCCcEEEEEeCcchhhcccCcccEEEc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLERFGPGSRIIVTTRDRRVLDNFGVGNIYKV 148 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~~~~~~~l 148 (349)
.+.+.+-.++=++|||+.-. .+.-..+...+.....+..+|+.|.+...... ...++.+
T Consensus 490 ~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~--~D~Ii~l 551 (582)
T PRK11176 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK--ADEILVV 551 (582)
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh--CCEEEEE
Confidence 55666666777889999852 22222222222222334555555555544433 3334444
No 308
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.32 E-value=71 Score=30.39 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=11.3
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|+.|.||||++.
T Consensus 211 lvGptGvGKTTt~a 224 (407)
T PRK12726 211 LIGQTGVGKTTTLV 224 (407)
T ss_pred EECCCCCCHHHHHH
Confidence 45668999999876
No 309
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=52.72 E-value=34 Score=33.99 Aligned_cols=60 Identities=23% Similarity=0.322 Sum_probs=37.8
Q ss_pred HHHHHhCCCceEEEEecCCCc---hhHHHHHcccCCCCCCcEEEEEeCcchhhcccCcccEEEcCC
Q 045618 88 YVRERLRRTKVLIVLDDVNKV---GQLEYLIGGLERFGPGSRIIVTTRDRRVLDNFGVGNIYKVNG 150 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~~~~~~~l~~ 150 (349)
.+...+-.+.=+||||.--+. +..+.+...+. ...+.||+.|-++.....+. ..++.+.+
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~--~f~Gtvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL--DFEGTVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHH--hCCCeEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 566677778889999988643 33333333333 23456888899987766653 44555553
No 310
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=52.56 E-value=48 Score=32.55 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=12.0
Q ss_pred CCCceEEEEecCCC
Q 045618 94 RRTKVLIVLDDVNK 107 (349)
Q Consensus 94 ~~~~~LlVlDdv~~ 107 (349)
.++++|||+||+-.
T Consensus 252 ~G~~VLlv~DdlTr 265 (497)
T TIGR03324 252 QGRDVLIVYDDLTQ 265 (497)
T ss_pred CCCCEEEEEcChhH
Confidence 57999999999954
No 311
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=52.36 E-value=7 Score=32.33 Aligned_cols=13 Identities=15% Similarity=-0.010 Sum_probs=10.7
Q ss_pred CCCCCchhhHHHH
Q 045618 17 ATSCGIVKIRRCL 29 (349)
Q Consensus 17 ~~~gGiGKT~la~ 29 (349)
.+-||.||||+|.
T Consensus 6 s~kgG~GKSt~a~ 18 (179)
T cd03110 6 SGKGGTGKTTVTA 18 (179)
T ss_pred cCCCCCCHHHHHH
Confidence 3459999999987
No 312
>PRK06696 uridine kinase; Validated
Probab=52.08 E-value=7 Score=33.85 Aligned_cols=19 Identities=5% Similarity=-0.230 Sum_probs=14.8
Q ss_pred hcccCCCCCchhhHHHHHH
Q 045618 13 ELNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~~~ 31 (349)
.....|++|-||||+|...
T Consensus 24 iI~I~G~sgsGKSTlA~~L 42 (223)
T PRK06696 24 RVAIDGITASGKTTFADEL 42 (223)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4456677999999999844
No 313
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=52.06 E-value=27 Score=24.05 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHHH
Q 045618 248 FNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDLL 293 (349)
Q Consensus 248 p~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~lv 293 (349)
+-+++.+.+..+.+.. ......++.|.+.++|... .+.+.++|.-
T Consensus 26 ~~~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~~~-~~~i~I~d~~ 71 (76)
T PF13545_consen 26 PLPLTQEEIADMLGVSRETVSRILKRLKDEGIIEVK-RGKIIILDPE 71 (76)
T ss_dssp EEESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHH
T ss_pred EecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEc-CCEEEECCHH
Confidence 3348899999999998 7889999999999999987 7789988863
No 314
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=51.97 E-value=45 Score=28.66 Aligned_cols=49 Identities=27% Similarity=0.366 Sum_probs=28.9
Q ss_pred HhCCCceEEEEecCCCc---hh----HHHHHcccCCCC-CCcEEEEEeCcchhhccc
Q 045618 92 RLRRTKVLIVLDDVNKV---GQ----LEYLIGGLERFG-PGSRIIVTTRDRRVLDNF 140 (349)
Q Consensus 92 ~L~~~~~LlVlDdv~~~---~~----~~~l~~~~~~~~-~~~~IlvTTR~~~~~~~~ 140 (349)
.+...+.|++||..-.. .+ ...+...+...+ .+..+|++|-........
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 34467899999998632 11 122333332222 245799999988765543
No 315
>PRK10818 cell division inhibitor MinD; Provisional
Probab=51.64 E-value=6.9 Score=34.89 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=9.7
Q ss_pred CCCchhhHHHH
Q 045618 19 SCGIVKIRRCL 29 (349)
Q Consensus 19 ~gGiGKT~la~ 29 (349)
=||+||||+|.
T Consensus 11 KGGvGKTt~a~ 21 (270)
T PRK10818 11 KGGVGKTTSSA 21 (270)
T ss_pred CCCCcHHHHHH
Confidence 39999999987
No 316
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=51.59 E-value=6.9 Score=34.83 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=11.0
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
..|+.|.|||+++.
T Consensus 43 i~G~~gsGKTql~l 56 (256)
T PF08423_consen 43 IVGESGSGKTQLCL 56 (256)
T ss_dssp EEESTTSSHHHHHH
T ss_pred EEEecccccchHHH
Confidence 34557999999986
No 317
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=51.42 E-value=50 Score=30.17 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=25.3
Q ss_pred CCHHHHHHHHhCCCceEEEEecCCCchhHHHHH
Q 045618 83 PNLPEYVRERLRRTKVLIVLDDVNKVGQLEYLI 115 (349)
Q Consensus 83 ~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~ 115 (349)
-+..+.+...|+...=.+++|.+.+.+.++.+.
T Consensus 205 ~~~~~~l~~~Lr~~pd~ii~gE~r~~e~~~~l~ 237 (308)
T TIGR02788 205 VTPKDLLQSCLRMRPDRIILGELRGDEAFDFIR 237 (308)
T ss_pred cCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHH
Confidence 355667888888888889999999877665443
No 318
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=50.63 E-value=7.2 Score=34.05 Aligned_cols=11 Identities=18% Similarity=0.093 Sum_probs=9.8
Q ss_pred CCCchhhHHHH
Q 045618 19 SCGIVKIRRCL 29 (349)
Q Consensus 19 ~gGiGKT~la~ 29 (349)
-||+||||+|.
T Consensus 10 KGGvGKTt~a~ 20 (246)
T TIGR03371 10 KGGVGKTTLTA 20 (246)
T ss_pred CCCccHHHHHH
Confidence 49999999987
No 319
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=50.63 E-value=63 Score=31.11 Aligned_cols=71 Identities=15% Similarity=0.036 Sum_probs=37.6
Q ss_pred CcEEEEEeCcchhhcc--cCcc---cEEEcCCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHH
Q 045618 124 GSRIIVTTRDRRVLDN--FGVG---NIYKVNGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSF 198 (349)
Q Consensus 124 ~~~IlvTTR~~~~~~~--~~~~---~~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~ 198 (349)
.-.|+.||...+-... +... .-+.++-=+.+.-..|+..+..... ++ .+..+|.+...+.-+.=..++..
T Consensus 338 ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 338 ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred ceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHH
Confidence 4456667766553322 1221 2455666667777777777773322 22 34445555555554444555554
Q ss_pred h
Q 045618 199 L 199 (349)
Q Consensus 199 l 199 (349)
+
T Consensus 413 l 413 (457)
T KOG0743|consen 413 L 413 (457)
T ss_pred H
Confidence 4
No 320
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=50.51 E-value=10 Score=29.67 Aligned_cols=17 Identities=6% Similarity=-0.216 Sum_probs=13.6
Q ss_pred CCCCCchhhHHHHHHhh
Q 045618 17 ATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~ 33 (349)
.|+.|.|||+++...+.
T Consensus 2 ~G~~gsGKstl~~~l~~ 18 (163)
T cd00880 2 FGRTNAGKSSLLNALLG 18 (163)
T ss_pred cCCCCCCHHHHHHHHhC
Confidence 57889999999985543
No 321
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=50.46 E-value=7.9 Score=33.76 Aligned_cols=10 Identities=20% Similarity=0.189 Sum_probs=9.4
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||-||||++.
T Consensus 11 GGaGKTT~~~ 20 (231)
T PF07015_consen 11 GGAGKTTAAM 20 (231)
T ss_pred CCCcHHHHHH
Confidence 9999999987
No 322
>CHL00175 minD septum-site determining protein; Validated
Probab=50.14 E-value=7.8 Score=34.81 Aligned_cols=11 Identities=18% Similarity=0.154 Sum_probs=9.7
Q ss_pred CCCchhhHHHH
Q 045618 19 SCGIVKIRRCL 29 (349)
Q Consensus 19 ~gGiGKT~la~ 29 (349)
-||+||||+|.
T Consensus 24 KGGvGKTt~a~ 34 (281)
T CHL00175 24 KGGVGKTTTTA 34 (281)
T ss_pred CCCCcHHHHHH
Confidence 39999999987
No 323
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=50.08 E-value=76 Score=22.49 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=40.1
Q ss_pred HHHHHHHhcccCCC--CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC--CCeEEe
Q 045618 237 EKSLFLDIACFFNG--QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR--GNQLQM 289 (349)
Q Consensus 237 ~~~~f~~la~fp~~--~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~--~~~~~m 289 (349)
.-+++.+++..+.+ .+.+.+....... ......++.|.+.++|.... +|.|.+
T Consensus 10 Al~~l~~la~~~~~~~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L 67 (83)
T PF02082_consen 10 ALRILLYLARHPDGKPVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYRL 67 (83)
T ss_dssp HHHHHHHHHCTTTSC-BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEEE
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCceee
Confidence 45667788887775 7888888888777 77888999999999999654 355543
No 324
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=50.08 E-value=9.7 Score=32.89 Aligned_cols=19 Identities=16% Similarity=0.001 Sum_probs=15.4
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
.+..|++|-||||+|+...
T Consensus 11 IgIaG~SgSGKTTva~~l~ 29 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELS 29 (218)
T ss_pred EEEeCCCCCCHHHHHHHHH
Confidence 4577889999999999543
No 325
>PRK13236 nitrogenase reductase; Reviewed
Probab=50.06 E-value=7.4 Score=35.44 Aligned_cols=14 Identities=21% Similarity=-0.035 Sum_probs=11.0
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
..|=||+||||.+.
T Consensus 11 ~~GKGGVGKTt~a~ 24 (296)
T PRK13236 11 FYGKGGIGKSTTSQ 24 (296)
T ss_pred EECCCcCCHHHHHH
Confidence 34559999999876
No 326
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=49.93 E-value=46 Score=20.28 Aligned_cols=39 Identities=13% Similarity=0.294 Sum_probs=29.9
Q ss_pred CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEec
Q 045618 251 QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMH 290 (349)
Q Consensus 251 ~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH 290 (349)
.+...+....... ......+..|.+.+++... .+.|.+|
T Consensus 9 ~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~~~-~~~~~i~ 48 (48)
T smart00419 9 LTRQEIAELLGLTRETVSRTLKRLEKEGLISRE-GGRIVIL 48 (48)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe-CCEEEEC
Confidence 4556666666666 6778889999999999987 4788776
No 327
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=49.69 E-value=8 Score=34.02 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=10.2
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 9 ~kGGvGKTt~a~ 20 (261)
T TIGR01968 9 GKGGVGKTTTTA 20 (261)
T ss_pred CCCCccHHHHHH
Confidence 449999999977
No 328
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=49.50 E-value=38 Score=31.98 Aligned_cols=15 Identities=13% Similarity=0.034 Sum_probs=12.3
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
.+||.|.||||++..
T Consensus 142 lvGptGvGKTTtiak 156 (374)
T PRK14722 142 LMGPTGVGKTTTTAK 156 (374)
T ss_pred EECCCCCCHHHHHHH
Confidence 567789999999773
No 329
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=49.34 E-value=33 Score=35.33 Aligned_cols=51 Identities=8% Similarity=0.234 Sum_probs=26.8
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+.+.+-.+.-+++||..-. ...-+.+...+.....+..+|+.|.+.....
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 656 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVR 656 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHH
Confidence 66667777788899999853 2222222222221133445555555544433
No 330
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=49.34 E-value=37 Score=34.10 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=25.6
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCCC-CCCcEEEEEeCcc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLERF-GPGSRIIVTTRDR 134 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~-~~~~~IlvTTR~~ 134 (349)
.+.+.+-.++-++|||+.-+ .+.-+.+...+... ...+.|+||-|..
T Consensus 495 alARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~ 545 (588)
T PRK11174 495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChH
Confidence 55666666778899999853 22222222222211 2355666666654
No 331
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=49.25 E-value=7 Score=33.25 Aligned_cols=14 Identities=14% Similarity=0.074 Sum_probs=11.2
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+||.|+||||.+.
T Consensus 6 lvGptGvGKTTt~a 19 (196)
T PF00448_consen 6 LVGPTGVGKTTTIA 19 (196)
T ss_dssp EEESTTSSHHHHHH
T ss_pred EECCCCCchHhHHH
Confidence 46889999987754
No 332
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=49.22 E-value=48 Score=32.27 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=15.2
Q ss_pred HHHHHh---CCCceEEEEecCCC
Q 045618 88 YVRERL---RRTKVLIVLDDVNK 107 (349)
Q Consensus 88 ~l~~~L---~~~~~LlVlDdv~~ 107 (349)
.+.+++ .++++||++|++-.
T Consensus 227 tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 227 TMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHhcCCceEEEecchHH
Confidence 455555 67999999999954
No 333
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=49.09 E-value=13 Score=30.23 Aligned_cols=17 Identities=12% Similarity=-0.134 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|-||||+|...-
T Consensus 3 l~G~~GsGKSTla~~l~ 19 (163)
T TIGR01313 3 LMGVAGSGKSTIASALA 19 (163)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45788999999998543
No 334
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=49.06 E-value=28 Score=30.23 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=27.6
Q ss_pred CCceEEEEecCCCc-------hhHHHHHcccCCCCCCcEEEEEeCcchhhcc
Q 045618 95 RTKVLIVLDDVNKV-------GQLEYLIGGLERFGPGSRIIVTTRDRRVLDN 139 (349)
Q Consensus 95 ~~~~LlVlDdv~~~-------~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~ 139 (349)
..+.|+++|..... .....+...+.. ..++.+|++|....+...
T Consensus 109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHH
Confidence 46899999997321 112233333332 257889999999877543
No 335
>PRK14737 gmk guanylate kinase; Provisional
Probab=48.93 E-value=10 Score=31.85 Aligned_cols=18 Identities=11% Similarity=-0.033 Sum_probs=14.7
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
.+||.|.|||+|++....
T Consensus 9 l~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 9 ISSVAGGGKSTIIQALLE 26 (186)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 578899999999985543
No 336
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=48.80 E-value=1.6e+02 Score=26.34 Aligned_cols=98 Identities=15% Similarity=0.057 Sum_probs=57.6
Q ss_pred CCCceEEEEecCCCc---hhHHHHHcccCCCCCCcEEEEEeCcchh-------hcccCcccEEEcCCCChHhHHHHHHHh
Q 045618 94 RRTKVLIVLDDVNKV---GQLEYLIGGLERFGPGSRIIVTTRDRRV-------LDNFGVGNIYKVNGLKYREALELFCNC 163 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~~~~IlvTTR~~~~-------~~~~~~~~~~~l~~L~~~ea~~L~~~~ 163 (349)
-+.+-++|++++... ..++.+...+....++..+|+++...+. .........+...+++..+-...+...
T Consensus 44 f~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 123 (302)
T TIGR01128 44 FSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQAR 123 (302)
T ss_pred ccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHH
Confidence 356778999999753 3456665554444456666666643221 111113456778888888888777776
Q ss_pred hccCCCCChhHHHHHHHHHHHcCCCchHHH
Q 045618 164 AFKENHCPEDLLVHSKRILDYANGNPLAVR 193 (349)
Q Consensus 164 a~~~~~~~~~~~~~~~~i~~~c~glPLAl~ 193 (349)
+......- ..+.+..|++.++|-...+.
T Consensus 124 ~~~~g~~i--~~~a~~~l~~~~~~d~~~l~ 151 (302)
T TIGR01128 124 LKKLGLRI--DPDAVQLLAELVEGNLLAIA 151 (302)
T ss_pred HHHcCCCC--CHHHHHHHHHHhCcHHHHHH
Confidence 63332211 13556777788877665543
No 337
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=48.67 E-value=9 Score=31.69 Aligned_cols=17 Identities=12% Similarity=-0.228 Sum_probs=14.0
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|.||||+++...
T Consensus 6 i~G~sGsGKttl~~~l~ 22 (179)
T TIGR02322 6 VVGPSGAGKDTLLDYAR 22 (179)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 57889999999998543
No 338
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=48.63 E-value=8.7 Score=32.94 Aligned_cols=15 Identities=13% Similarity=-0.137 Sum_probs=12.5
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..||=|.||||||..
T Consensus 9 I~G~IG~GKSTLa~~ 23 (216)
T COG1428 9 IEGMIGAGKSTLAQA 23 (216)
T ss_pred EecccccCHHHHHHH
Confidence 567779999999983
No 339
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=48.62 E-value=58 Score=21.70 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=29.4
Q ss_pred C-CHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeE
Q 045618 251 Q-DKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQL 287 (349)
Q Consensus 251 ~-~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~ 287 (349)
+ +...+...+... ..+..++..|.+.++|+..+...+
T Consensus 24 lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~~~G~ 62 (64)
T PF00392_consen 24 LPSERELAERYGVSRTTVREALRRLEAEGLIERRPGRGT 62 (64)
T ss_dssp E--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred eCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEEECCceE
Confidence 6 778888888888 888999999999999998764443
No 340
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=48.60 E-value=8.2 Score=30.41 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=9.5
Q ss_pred CCCchhhHHHHHHhh
Q 045618 19 SCGIVKIRRCLMVFR 33 (349)
Q Consensus 19 ~gGiGKT~la~~~f~ 33 (349)
.=|+|||++|+..-.
T Consensus 7 ~PG~GKT~la~~lA~ 21 (131)
T PF07726_consen 7 VPGVGKTTLAKALAR 21 (131)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH
Confidence 358999999985433
No 341
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=48.57 E-value=13 Score=29.65 Aligned_cols=18 Identities=11% Similarity=-0.162 Sum_probs=13.9
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|.||||+|+..-.
T Consensus 4 l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 4 VMGVSGSGKSTVGKALAE 21 (150)
T ss_pred EEcCCCCCHHHHHHHHHh
Confidence 357789999999985544
No 342
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=48.47 E-value=8.5 Score=32.80 Aligned_cols=20 Identities=10% Similarity=-0.026 Sum_probs=15.4
Q ss_pred hcccCCCCCchhhHHHHHHh
Q 045618 13 ELNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~~~f 32 (349)
++-..|++|.||||++....
T Consensus 7 kivv~G~~g~GKTtl~~~l~ 26 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLV 26 (219)
T ss_pred EEEEEcCCCccHHHHHHHHh
Confidence 34467889999999987443
No 343
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=48.27 E-value=8.1 Score=30.90 Aligned_cols=18 Identities=17% Similarity=0.049 Sum_probs=14.0
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|++|+|||+++....
T Consensus 4 ~~~G~~~~GKTsl~~~l~ 21 (164)
T cd04139 4 IVVGAGGVGKSALTLQFM 21 (164)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 356789999999987543
No 344
>CHL00206 ycf2 Ycf2; Provisional
Probab=48.07 E-value=2e+02 Score=33.49 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=35.3
Q ss_pred CCceEEEEecCCCch-------hHHHHHcccCCC-----CCCcEEEEEeCcchhhccc--C---cccEEEcCCCChHhHH
Q 045618 95 RTKVLIVLDDVNKVG-------QLEYLIGGLERF-----GPGSRIIVTTRDRRVLDNF--G---VGNIYKVNGLKYREAL 157 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~-------~~~~l~~~~~~~-----~~~~~IlvTTR~~~~~~~~--~---~~~~~~l~~L~~~ea~ 157 (349)
...|.|.+|+++... .+..++..+... ..+..||-+|-.+++.... . ....+.++.++..+-.
T Consensus 1731 ~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~ 1810 (2281)
T CHL00206 1731 MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQR 1810 (2281)
T ss_pred CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHH
Confidence 468999999998542 144444333311 2244455555555543321 2 2346777766654444
Q ss_pred HHH
Q 045618 158 ELF 160 (349)
Q Consensus 158 ~L~ 160 (349)
+.|
T Consensus 1811 kiL 1813 (2281)
T CHL00206 1811 KHF 1813 (2281)
T ss_pred HHH
Confidence 444
No 345
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=48.06 E-value=51 Score=28.68 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHHHHhCCCceEEEEecCCC------chhHHHHHcccCCCCCCcEEEEEeCcch
Q 045618 88 YVRERLRRTKVLIVLDDVNK------VGQLEYLIGGLERFGPGSRIIVTTRDRR 135 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~------~~~~~~l~~~~~~~~~~~~IlvTTR~~~ 135 (349)
.+.+.|.-+.=.|.+|.--+ ...++++...+. ..-+.||||-.-++
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk--~~yTIviVTHnmqQ 210 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK--KKYTIVIVTHNMQQ 210 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH--hccEEEEEeCCHHH
Confidence 66778888888899998753 245666666554 23344444443343
No 346
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=48.06 E-value=8.5 Score=33.63 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=12.7
Q ss_pred ccCCCCCchhhHHHHH
Q 045618 15 NRATSCGIVKIRRCLM 30 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~ 30 (349)
...|=||.||||+|..
T Consensus 4 aI~GKGG~GKTtiaal 19 (255)
T COG3640 4 AITGKGGVGKTTIAAL 19 (255)
T ss_pred EEecCCCccHHHHHHH
Confidence 3456699999999874
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=48.05 E-value=47 Score=33.52 Aligned_cols=136 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred cccCCCCCchhhHHHH------HHhhhhcceeeccccccccccCcceeehhhhccH-------HHHHHHHHHHh--hccc
Q 045618 14 LNRATSCGIVKIRRCL------MVFRLCSTECLSEALWKPSYLNSRAIRESRSIMN-------QRVSNKFLGWL--VEQE 78 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~------~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~-------~~l~~~il~~l--~~~~ 78 (349)
....|+-|.|||||++ ......++..+.-.|-..........++...... .....+++..+ ....
T Consensus 368 v~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~ 447 (590)
T PRK13409 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL 447 (590)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH
Q ss_pred CCCCCCHHH------HHHHHhCCCceEEEEecCC---CchhHHHHHcccCCCCC--CcEEEEEeCcchhhcccCcccEEE
Q 045618 79 QIRTPNLPE------YVRERLRRTKVLIVLDDVN---KVGQLEYLIGGLERFGP--GSRIIVTTRDRRVLDNFGVGNIYK 147 (349)
Q Consensus 79 ~~~~~~~~~------~l~~~L~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~--~~~IlvTTR~~~~~~~~~~~~~~~ 147 (349)
+..+.++.- .+...|....=+++||.-- |......+...+..... +..||++|.+...+..+ ..+++.
T Consensus 448 ~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~-aDrviv 526 (590)
T PRK13409 448 DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI-SDRLMV 526 (590)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCEEEE
Q ss_pred cCC
Q 045618 148 VNG 150 (349)
Q Consensus 148 l~~ 150 (349)
+.+
T Consensus 527 l~~ 529 (590)
T PRK13409 527 FEG 529 (590)
T ss_pred EcC
No 348
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=47.99 E-value=47 Score=32.60 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=30.8
Q ss_pred HHHHHhCCCceEEEEecCCCchh---HHHHHcccCCCCCCcEEEEEeCcchhhcc
Q 045618 88 YVRERLRRTKVLIVLDDVNKVGQ---LEYLIGGLERFGPGSRIIVTTRDRRVLDN 139 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~IlvTTR~~~~~~~ 139 (349)
.|.+.+-.+.=||.||.--+.-+ +..|-..+.. . ...+||-|-++.-...
T Consensus 208 aLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t-~-~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 208 ALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT-W-KITSLIVSHDRNFLNT 260 (582)
T ss_pred HHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhh-C-CceEEEEeccHHHHHH
Confidence 56677777888999998865433 3333333321 2 2567778887765544
No 349
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.65 E-value=57 Score=33.34 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=29.4
Q ss_pred HHHHHhCCCceEEEEecCCC------chhHHHHHcccCCCCCCcEEEEEeCcchh
Q 045618 88 YVRERLRRTKVLIVLDDVNK------VGQLEYLIGGLERFGPGSRIIVTTRDRRV 136 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~------~~~~~~l~~~~~~~~~~~~IlvTTR~~~~ 136 (349)
.+.+.|=.+...||||.+-+ +..+++-+.... ...+.|+|+=|-.-+
T Consensus 614 AIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~--~~rTVlvIAHRLSTV 666 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM--QGRTVLVIAHRLSTV 666 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh--cCCeEEEEehhhhHh
Confidence 67788888889999999853 223333333222 336677777676544
No 350
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=47.64 E-value=74 Score=24.94 Aligned_cols=60 Identities=23% Similarity=0.302 Sum_probs=43.0
Q ss_pred HHHHHHHhHhcCChhHHHHHHHhcccCCC-CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC
Q 045618 222 IYDVLKISYNEIKAEEKSLFLDIACFFNG-QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR 283 (349)
Q Consensus 222 l~~~l~~s~~~L~~~~~~~f~~la~fp~~-~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~ 283 (349)
+..++...| .|++....+|..|-- .++ .+.+.+.....-+ ..+...++.|++.|||++..
T Consensus 15 ~~dvl~c~~-GLs~~Dv~v~~~LL~-~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 15 CEDVLKCVY-GLSELDVEVYKALLE-ENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHh-hcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeee
Confidence 445555555 456655555544322 344 9999999888887 88999999999999999664
No 351
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=47.63 E-value=9.2 Score=34.74 Aligned_cols=19 Identities=16% Similarity=0.037 Sum_probs=14.9
Q ss_pred hhcccCCCCCchhhHHHHH
Q 045618 12 AELNRATSCGIVKIRRCLM 30 (349)
Q Consensus 12 ~~~~~~~~gGiGKT~la~~ 30 (349)
...+..|+.|.||||+|+.
T Consensus 63 ~IIGIaG~~GSGKSTlar~ 81 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARI 81 (290)
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3455777889999999973
No 352
>PF13479 AAA_24: AAA domain
Probab=47.57 E-value=9.2 Score=32.90 Aligned_cols=16 Identities=13% Similarity=-0.143 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|+|||++|...
T Consensus 8 IyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 8 IYGPPGSGKTTLAASL 23 (213)
T ss_pred EECCCCCCHHHHHHhC
Confidence 5678999999999854
No 353
>PRK00131 aroK shikimate kinase; Reviewed
Probab=47.57 E-value=13 Score=30.22 Aligned_cols=19 Identities=11% Similarity=-0.136 Sum_probs=14.8
Q ss_pred cCCCCCchhhHHHHHHhhh
Q 045618 16 RATSCGIVKIRRCLMVFRL 34 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~ 34 (349)
..|+.|-||||+|+.....
T Consensus 9 l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 9 LIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 5677899999999855443
No 354
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=47.55 E-value=16 Score=29.89 Aligned_cols=25 Identities=16% Similarity=-0.043 Sum_probs=16.5
Q ss_pred CCCCchhhHHHHHHhhhhcceeecc
Q 045618 18 TSCGIVKIRRCLMVFRLCSTECLSE 42 (349)
Q Consensus 18 ~~gGiGKT~la~~~f~~~~w~~~~~ 42 (349)
|+.|-||||++........++.++.
T Consensus 2 G~sGsGKSTla~~la~~l~~~~~~~ 26 (163)
T PRK11545 2 GVSGSGKSAVASEVAHQLHAAFLDG 26 (163)
T ss_pred CCCCCcHHHHHHHHHHHhCCeEEeC
Confidence 6789999999985544333334433
No 355
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=47.44 E-value=41 Score=33.86 Aligned_cols=59 Identities=8% Similarity=0.184 Sum_probs=31.0
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCCCCCCcEEEEEeCcchhhcccCcccEEEc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLERFGPGSRIIVTTRDRRVLDNFGVGNIYKV 148 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~~~~~~~l 148 (349)
.+.+.+-.++-++|||+.-. ....+.+...+.....+..||++|.+...... ..+++.+
T Consensus 481 ~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~--~d~i~~l 542 (585)
T TIGR01192 481 AIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN--ADLVLFL 542 (585)
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc--CCEEEEE
Confidence 66777777888899999863 22222222222211234455666655544433 3344444
No 356
>PHA00729 NTP-binding motif containing protein
Probab=47.40 E-value=9.6 Score=33.18 Aligned_cols=18 Identities=22% Similarity=-0.071 Sum_probs=13.8
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|+.|.|||++|....
T Consensus 21 lItG~pGvGKT~LA~aLa 38 (226)
T PHA00729 21 VIFGKQGSGKTTYALKVA 38 (226)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 356668999999998543
No 357
>PLN03130 ABC transporter C family member; Provisional
Probab=47.15 E-value=59 Score=37.19 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=15.3
Q ss_pred HHHHHhCCCceEEEEecCCC
Q 045618 88 YVRERLRRTKVLIVLDDVNK 107 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~ 107 (349)
.+.+.+-.+.=+++|||+-.
T Consensus 750 aLARAly~~~~IlLLDEptS 769 (1622)
T PLN03130 750 SMARAVYSNSDVYIFDDPLS 769 (1622)
T ss_pred HHHHHHhCCCCEEEECCCcc
Confidence 66666767777899999953
No 358
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=47.14 E-value=42 Score=33.09 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=12.2
Q ss_pred CCCceEEEEecCCCc
Q 045618 94 RRTKVLIVLDDVNKV 108 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~ 108 (349)
.++++|||+||+-.-
T Consensus 251 ~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 251 NGKHALIIYDDLSKH 265 (501)
T ss_pred cCCCEEEEecchHHH
Confidence 378999999999643
No 359
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=47.09 E-value=11 Score=31.18 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=12.9
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
.+|+-|+||||+++....
T Consensus 4 iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 4 ITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EES-TTSSHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHH
Confidence 356679999999885443
No 360
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=46.88 E-value=88 Score=30.91 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=25.4
Q ss_pred HHHHHhCCCceEEEEecCC---CchhHHHHHcccCCCCCCcEEEEEeCcchh
Q 045618 88 YVRERLRRTKVLIVLDDVN---KVGQLEYLIGGLERFGPGSRIIVTTRDRRV 136 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~ 136 (349)
.+.+.+-.++=+++||+.- |....+.+...+.....+..+|+.|.+...
T Consensus 468 ~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 519 (529)
T TIGR02857 468 ALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLAL 519 (529)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 5666666677889999985 233233333333222234444444444433
No 361
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=46.55 E-value=9.6 Score=34.66 Aligned_cols=12 Identities=25% Similarity=0.108 Sum_probs=10.2
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+=||+||||.+.
T Consensus 11 ~KGGvGKTt~~~ 22 (295)
T PRK13234 11 GKGGIGKSTTSQ 22 (295)
T ss_pred CCCCccHHHHHH
Confidence 559999999866
No 362
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=46.34 E-value=9.7 Score=33.43 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=13.5
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
+.+|++|-|||||++..
T Consensus 37 givGeSGsGKSTL~r~l 53 (252)
T COG1124 37 GIVGESGSGKSTLARLL 53 (252)
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 45677899999999843
No 363
>PRK06547 hypothetical protein; Provisional
Probab=46.24 E-value=10 Score=31.52 Aligned_cols=17 Identities=12% Similarity=-0.140 Sum_probs=13.3
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|-||||+|...-
T Consensus 20 i~G~~GsGKTt~a~~l~ 36 (172)
T PRK06547 20 IDGRSGSGKTTLAGALA 36 (172)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45778999999998443
No 364
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=45.77 E-value=7.7 Score=31.38 Aligned_cols=19 Identities=5% Similarity=-0.118 Sum_probs=15.0
Q ss_pred hcccCCCCCchhhHHHHHH
Q 045618 13 ELNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~~~ 31 (349)
++-.+|+.|.|||+|+...
T Consensus 5 kv~vvG~~~~GKTsli~~l 23 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRF 23 (165)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4456788999999998743
No 365
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=45.51 E-value=1.1e+02 Score=24.95 Aligned_cols=94 Identities=17% Similarity=0.276 Sum_probs=51.2
Q ss_pred cCCCchHHHHHhHHhccCCHHHHHHHHHHhhcCC--------------------CCcHHHHHHHhHhc-----CChhHHH
Q 045618 185 ANGNPLAVRVLGSFLRQKSKLDWESALDNLKRIS--------------------DPDIYDVLKISYNE-----IKAEEKS 239 (349)
Q Consensus 185 c~glPLAl~~~a~~l~~~~~~~~~~~l~~l~~~~--------------------~~~l~~~l~~s~~~-----L~~~~~~ 239 (349)
..|-|+.+..++..+. +..+..++++.|...- .......+.--+.. |+...-.
T Consensus 9 ~s~~pvs~~~La~~l~--~~~~v~~~l~~L~~~y~~~~~gl~l~~~~~~y~l~tk~~~~~~v~~~~~~~~~~~LS~aalE 86 (159)
T PF04079_consen 9 ASGEPVSIEELAEILG--SEDEVEEALEELQEEYNEEDRGLELVEVGGGYRLQTKPEYAEYVEKLFKKPKPPKLSQAALE 86 (159)
T ss_dssp H-SS-B-HHHHHHHCT---HHHHHHHHHHHHHHHHHCT-SEEEEEETTEEEEEE-GGGHHHHHHHHCTCCCHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHhC--CHHHHHHHHHHHHHHhccCCCCEEEEEECCEEEEEEhHHHHHHHHHHhccCccCCCCHHHHH
Confidence 3456777777777776 4555555555543220 12233333333322 3333344
Q ss_pred HHHHhcccCCCCCHHHHHHHhcccccHHHhHHHHhhCcceEEcC
Q 045618 240 LFLDIACFFNGQDKDSVLKMIGDSSFAHYGLNVLVDKSLVTVSR 283 (349)
Q Consensus 240 ~f~~la~fp~~~~~~~l~~~~~~~~~~~~~l~~L~~~sLl~~~~ 283 (349)
.+..+|. -+++++..+..+=+. .....++.|.+++||....
T Consensus 87 tLAiIAY-~QPiTr~eIe~IRGv--~s~~~i~~L~e~glI~~~g 127 (159)
T PF04079_consen 87 TLAIIAY-KQPITRAEIEEIRGV--NSDSVIKTLLERGLIEEVG 127 (159)
T ss_dssp HHHHHHH-H-SEEHHHHHHHHTS----HCHHHHHHHTTSEEEEE
T ss_pred HHHHHHh-cCCcCHHHHHHHcCC--ChHHHHHHHHHCCCEEecC
Confidence 4444443 356888888877776 4777899999999999764
No 366
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=45.24 E-value=11 Score=28.62 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=13.3
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..++.|-|||||+...
T Consensus 20 I~GpSGsGKSTLl~~l 35 (107)
T cd00820 20 ITGDSGIGKTELALEL 35 (107)
T ss_pred EEcCCCCCHHHHHHHh
Confidence 5677899999999854
No 367
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=45.17 E-value=11 Score=31.53 Aligned_cols=18 Identities=11% Similarity=-0.151 Sum_probs=14.8
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..||.|-||||+++....
T Consensus 7 l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 7 LMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 578899999999986543
No 368
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=45.05 E-value=65 Score=31.36 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=14.8
Q ss_pred HHHHHh---CCCceEEEEecCCC
Q 045618 88 YVRERL---RRTKVLIVLDDVNK 107 (349)
Q Consensus 88 ~l~~~L---~~~~~LlVlDdv~~ 107 (349)
.+.+++ .++++||++|++-.
T Consensus 226 tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 226 TIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHhcCCceEEEeccchH
Confidence 444554 47999999999953
No 369
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=45.03 E-value=15 Score=29.16 Aligned_cols=25 Identities=8% Similarity=-0.075 Sum_probs=17.1
Q ss_pred cCCCCCchhhHHHHHHhhhhcceee
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECL 40 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~ 40 (349)
..|+.|-||||+|+..-....|..+
T Consensus 4 l~G~~GsGKstla~~la~~l~~~~~ 28 (154)
T cd00464 4 LIGMMGAGKTTVGRLLAKALGLPFV 28 (154)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 4578899999999865444344333
No 370
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=44.95 E-value=55 Score=33.85 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=16.8
Q ss_pred HHHHHhCCCceEEEEecCC
Q 045618 88 YVRERLRRTKVLIVLDDVN 106 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~ 106 (349)
.+.+.|-.+.-+|+||..-
T Consensus 619 alARaLl~~P~ILlLDEaT 637 (709)
T COG2274 619 ALARALLSKPKILLLDEAT 637 (709)
T ss_pred HHHHHhccCCCEEEEeCcc
Confidence 7888888999999999985
No 371
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=44.90 E-value=11 Score=29.78 Aligned_cols=17 Identities=12% Similarity=0.045 Sum_probs=13.7
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..||.|.||||++....
T Consensus 4 i~GpsGsGKstl~~~L~ 20 (137)
T cd00071 4 LSGPSGVGKSTLLKRLL 20 (137)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 46889999999988543
No 372
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=44.89 E-value=15 Score=30.33 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|.||||+++...
T Consensus 8 i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 8 IVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 46778999999998544
No 373
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=44.86 E-value=12 Score=28.87 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=12.1
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..+.||.|||+++..
T Consensus 4 ~~GkgG~GKTt~a~~ 18 (116)
T cd02034 4 ITGKGGVGKTTIAAL 18 (116)
T ss_pred EECCCCCCHHHHHHH
Confidence 356799999999873
No 374
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=44.77 E-value=11 Score=31.80 Aligned_cols=19 Identities=11% Similarity=-0.048 Sum_probs=14.7
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
...|+.|-||||+|+....
T Consensus 3 ~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 3 GISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4567889999999985443
No 375
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=44.77 E-value=1.9e+02 Score=25.70 Aligned_cols=71 Identities=11% Similarity=0.037 Sum_probs=46.9
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCc-chhhcccC-cccEEEcCCCChHhHHHHHHHhh
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRD-RRVLDNFG-VGNIYKVNGLKYREALELFCNCA 164 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~-~~~~~~~~-~~~~~~l~~L~~~ea~~L~~~~a 164 (349)
.++.-++|+|+++.. +....++..+.+-.+++.+|.+|.+ ..+...+. -...+.+...+..++.++....+
T Consensus 87 ~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~~~~ 161 (263)
T PRK06581 87 ISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYSQFI 161 (263)
T ss_pred cCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHHHhc
Confidence 456778999999854 4566776666554566666655554 44554442 23467888888887777776665
No 376
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=44.63 E-value=11 Score=34.40 Aligned_cols=12 Identities=17% Similarity=-0.144 Sum_probs=10.3
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+=||+||||.|.
T Consensus 7 gKGGvGKTT~a~ 18 (296)
T TIGR02016 7 GKGGSGKSFTTT 18 (296)
T ss_pred CCCCCCHHHHHH
Confidence 459999999977
No 377
>PRK13947 shikimate kinase; Provisional
Probab=44.54 E-value=16 Score=29.75 Aligned_cols=22 Identities=18% Similarity=-0.185 Sum_probs=15.9
Q ss_pred cCCCCCchhhHHHHHHhhhhcc
Q 045618 16 RATSCGIVKIRRCLMVFRLCST 37 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w 37 (349)
..|+.|.||||+++..-...-|
T Consensus 6 l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 6 LIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred EEcCCCCCHHHHHHHHHHHhCC
Confidence 4577899999999865444334
No 378
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=44.48 E-value=27 Score=30.13 Aligned_cols=14 Identities=14% Similarity=-0.202 Sum_probs=11.5
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|.-|.||||.|+
T Consensus 6 lTGyPgsGKTtfak 19 (261)
T COG4088 6 LTGYPGSGKTTFAK 19 (261)
T ss_pred EecCCCCCchHHHH
Confidence 34567999999998
No 379
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.14 E-value=79 Score=30.43 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=12.3
Q ss_pred cccCCCCCchhhHHHH
Q 045618 14 LNRATSCGIVKIRRCL 29 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~ 29 (349)
...+|+-|.||||++.
T Consensus 194 i~lvGpnG~GKTTtla 209 (420)
T PRK14721 194 YALIGPTGVGKTTTTA 209 (420)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3356667999999976
No 380
>COG4639 Predicted kinase [General function prediction only]
Probab=44.13 E-value=23 Score=28.96 Aligned_cols=20 Identities=15% Similarity=-0.119 Sum_probs=15.8
Q ss_pred CCCCCchhhHHHHHHhhhhc
Q 045618 17 ATSCGIVKIRRCLMVFRLCS 36 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~~~~ 36 (349)
.|..|-||+|.|+.+|...-
T Consensus 8 ~G~~~sGKsT~ak~n~~~~~ 27 (168)
T COG4639 8 RGASGSGKSTFAKENFLQNY 27 (168)
T ss_pred ecCCCCchhHHHHHhCCCcc
Confidence 46679999999998886533
No 381
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=44.10 E-value=2e+02 Score=29.25 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=52.6
Q ss_pred CHHHHHHHHhCCC-ceEEEEecCCCch------------hHHHHHcccCCCC--CCcEEEEEeCcchhhcc-cC---ccc
Q 045618 84 NLPEYVRERLRRT-KVLIVLDDVNKVG------------QLEYLIGGLERFG--PGSRIIVTTRDRRVLDN-FG---VGN 144 (349)
Q Consensus 84 ~~~~~l~~~L~~~-~~LlVlDdv~~~~------------~~~~l~~~~~~~~--~~~~IlvTTR~~~~~~~-~~---~~~ 144 (349)
.+...+.+..+.+ +..+.+|+++... ....+.......+ .+..||-+|+.++-... .. ..+
T Consensus 265 ~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ 344 (693)
T KOG0730|consen 265 NLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDR 344 (693)
T ss_pred HHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcc
Confidence 3444666777777 8889999886321 1222222222222 34445556666543221 11 234
Q ss_pred EEEcCCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCc
Q 045618 145 IYKVNGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 145 ~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glP 189 (349)
.+.++-.+..+-.++++...-.-+.. .......++..+.|.-
T Consensus 345 ev~IgiP~~~~RldIl~~l~k~~~~~---~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 345 EVEIGIPGSDGRLDILRVLTKKMNLL---SDVDLEDIAVSTHGYV 386 (693)
T ss_pred eeeecCCCchhHHHHHHHHHHhcCCc---chhhHHHHHHHccchh
Confidence 56666667666677776655222222 1233445666666653
No 382
>PRK00300 gmk guanylate kinase; Provisional
Probab=44.08 E-value=12 Score=31.78 Aligned_cols=18 Identities=11% Similarity=-0.023 Sum_probs=14.4
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
..+|+.|.|||||+....
T Consensus 9 ~i~G~sGsGKstl~~~l~ 26 (205)
T PRK00300 9 VLSGPSGAGKSTLVKALL 26 (205)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 357889999999998543
No 383
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=44.06 E-value=12 Score=30.08 Aligned_cols=16 Identities=19% Similarity=0.050 Sum_probs=13.0
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|.+|+|||+|+...
T Consensus 5 v~G~~~~GKTsli~~~ 20 (164)
T smart00173 5 VLGSGGVGKSALTIQF 20 (164)
T ss_pred EECCCCCCHHHHHHHH
Confidence 4678999999998743
No 384
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=43.89 E-value=13 Score=30.18 Aligned_cols=14 Identities=29% Similarity=0.216 Sum_probs=11.6
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
..|++|.||||+|.
T Consensus 19 i~G~sG~GKStlal 32 (149)
T cd01918 19 ITGPSGIGKSELAL 32 (149)
T ss_pred EEcCCCCCHHHHHH
Confidence 45668999999996
No 385
>PRK05439 pantothenate kinase; Provisional
Probab=43.82 E-value=11 Score=34.49 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=14.8
Q ss_pred hcccCCCCCchhhHHHHH
Q 045618 13 ELNRATSCGIVKIRRCLM 30 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~~ 30 (349)
..+..|+.|.||||+|..
T Consensus 88 iIgIaG~~gsGKSTla~~ 105 (311)
T PRK05439 88 IIGIAGSVAVGKSTTARL 105 (311)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 456778899999999983
No 386
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=43.76 E-value=11 Score=30.92 Aligned_cols=17 Identities=12% Similarity=0.006 Sum_probs=12.9
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|+|||+|+....
T Consensus 40 l~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 40 LLGQSGVGKSSLINALL 56 (161)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 35668999999997443
No 387
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=43.74 E-value=37 Score=30.94 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=26.9
Q ss_pred CHHHHHHHHhCCCceEEEEecCCCchhHHHHHc
Q 045618 84 NLPEYVRERLRRTKVLIVLDDVNKVGQLEYLIG 116 (349)
Q Consensus 84 ~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~ 116 (349)
+..+.++..|+...=-+|+..+.+.+.+..+..
T Consensus 192 ~~~~~l~~aLR~~pD~iivGEiR~~ea~~~l~a 224 (299)
T TIGR02782 192 SMTRLLKATLRLRPDRIIVGEVRGGEALDLLKA 224 (299)
T ss_pred CHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHH
Confidence 677789999999988999999999877665433
No 388
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=43.68 E-value=60 Score=32.26 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=30.1
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCCC-CCCcEEEEEeCcchhhcccCcccEEEc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLERF-GPGSRIIVTTRDRRVLDNFGVGNIYKV 148 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~-~~~~~IlvTTR~~~~~~~~~~~~~~~l 148 (349)
.+.+.+-.++=++|||+.-+ ...-+.+...+... ..+..+|++|........ ..+++.+
T Consensus 464 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~--~d~i~~l 526 (544)
T TIGR01842 464 ALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGC--VDKILVL 526 (544)
T ss_pred HHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 56666667778899999853 22222222222211 234556666655544332 2334444
No 389
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=43.60 E-value=11 Score=35.82 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=9.2
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||.+.
T Consensus 116 GGVGKTT~a~ 125 (388)
T PRK13705 116 GGVYKTSVSV 125 (388)
T ss_pred CCchHHHHHH
Confidence 9999999876
No 390
>PRK07667 uridine kinase; Provisional
Probab=43.57 E-value=12 Score=31.69 Aligned_cols=19 Identities=11% Similarity=-0.218 Sum_probs=14.5
Q ss_pred hcccCCCCCchhhHHHHHH
Q 045618 13 ELNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~~~ 31 (349)
..+..|+.|-||||+|...
T Consensus 19 iIgI~G~~gsGKStla~~L 37 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANL 37 (193)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3456677899999998843
No 391
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=43.53 E-value=14 Score=25.25 Aligned_cols=15 Identities=13% Similarity=-0.008 Sum_probs=12.0
Q ss_pred CCCCCchhhHHHHHH
Q 045618 17 ATSCGIVKIRRCLMV 31 (349)
Q Consensus 17 ~~~gGiGKT~la~~~ 31 (349)
.|+-|.||||+++..
T Consensus 5 ~G~~gsGKst~~~~l 19 (69)
T cd02019 5 TGGSGSGKSTVAKKL 19 (69)
T ss_pred ECCCCCCHHHHHHHH
Confidence 466799999999844
No 392
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=43.47 E-value=42 Score=32.44 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=11.9
Q ss_pred CCCceEEEEecCCC
Q 045618 94 RRTKVLIVLDDVNK 107 (349)
Q Consensus 94 ~~~~~LlVlDdv~~ 107 (349)
.++++|+++||+-.
T Consensus 246 ~G~~Vll~~DslTr 259 (442)
T PRK08927 246 QGKDVLCLMDSVTR 259 (442)
T ss_pred CCCcEEEEEeCcHH
Confidence 47999999999954
No 393
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=43.31 E-value=94 Score=24.83 Aligned_cols=17 Identities=12% Similarity=-0.121 Sum_probs=13.0
Q ss_pred CCCCCchhhHHHHHHhh
Q 045618 17 ATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~ 33 (349)
.|..|-||||+|+..-.
T Consensus 5 ~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 5 TGLSGSGKSTIARALEE 21 (149)
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 46789999999985433
No 394
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=43.20 E-value=27 Score=23.71 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=38.4
Q ss_pred cCChhHHHHHHHhcccCCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC
Q 045618 232 EIKAEEKSLFLDIACFFNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR 283 (349)
Q Consensus 232 ~L~~~~~~~f~~la~fp~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~ 283 (349)
.|++...++|.++. =.++.+...+.....-. ..+...++.|.+++||....
T Consensus 5 gLs~~E~~vy~~Ll-~~~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 5 GLSENEAKVYLALL-KNGPATAEEIAEELGISRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp CHHHHHHHHHHHHH-HHCHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence 34566667776665 12337888888888777 78889999999999999875
No 395
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=43.20 E-value=91 Score=31.30 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=14.2
Q ss_pred HHHHHhCCCceEEEEecCC
Q 045618 88 YVRERLRRTKVLIVLDDVN 106 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~ 106 (349)
.+.+.+-.+.-++|||+.-
T Consensus 485 alARall~~~~ililDE~t 503 (574)
T PRK11160 485 GIARALLHDAPLLLLDEPT 503 (574)
T ss_pred HHHHHHhcCCCEEEEeCCc
Confidence 5566666677889999985
No 396
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=43.12 E-value=1.5e+02 Score=22.90 Aligned_cols=70 Identities=9% Similarity=0.090 Sum_probs=46.9
Q ss_pred hHhcCChhHH-HHHHHhcccCCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCe---EEecHHHHHHHHH
Q 045618 229 SYNEIKAEEK-SLFLDIACFFNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQ---LQMHDLLQEMGRE 299 (349)
Q Consensus 229 s~~~L~~~~~-~~f~~la~fp~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~---~~mH~lv~~~a~~ 299 (349)
.|..|.+..| +++..|.- .+......+....... -.....+..|.+.+||.....|+ |++.+-+.++...
T Consensus 9 ~fkaLadptRl~IL~~L~~-~~~~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~~~~~~~~~ 83 (117)
T PRK10141 9 LFKILSDETRLGIVLLLRE-SGELCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQGKWVHYRLSPHIPAWAAK 83 (117)
T ss_pred HHHHhCCHHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEcCEEEEEECchHHHHHHH
Confidence 4566666553 44444431 1336667777666666 67888999999999999877655 8887766665554
No 397
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=43.01 E-value=11 Score=35.76 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=9.2
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||.+.
T Consensus 116 GGVGKTTta~ 125 (387)
T PHA02519 116 GGVYKTSSAV 125 (387)
T ss_pred CCCcHHHHHH
Confidence 9999999976
No 398
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=43.01 E-value=15 Score=29.47 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|+|||+++....
T Consensus 5 ~vG~~~vGKTsli~~l~ 21 (168)
T cd04119 5 SMGNSGVGKSCIIKRYC 21 (168)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 46788999999987543
No 399
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=42.98 E-value=78 Score=30.78 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=15.1
Q ss_pred HHHHHh---CCCceEEEEecCCC
Q 045618 88 YVRERL---RRTKVLIVLDDVNK 107 (349)
Q Consensus 88 ~l~~~L---~~~~~LlVlDdv~~ 107 (349)
.+.+++ .++++||++||+-.
T Consensus 226 tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 226 TMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHhcCCeeEEEecchhH
Confidence 455555 46899999999954
No 400
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=42.96 E-value=51 Score=33.12 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=12.6
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
.+|+.|-|||||++..
T Consensus 372 IvG~SGsGKSTLl~lL 387 (592)
T PRK10790 372 LVGHTGSGKSTLASLL 387 (592)
T ss_pred EECCCCCCHHHHHHHH
Confidence 4566899999998843
No 401
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=42.93 E-value=14 Score=29.83 Aligned_cols=15 Identities=13% Similarity=-0.223 Sum_probs=12.4
Q ss_pred ccCCCCCchhhHHHH
Q 045618 15 NRATSCGIVKIRRCL 29 (349)
Q Consensus 15 ~~~~~gGiGKT~la~ 29 (349)
...|.||.|||+++.
T Consensus 3 ~~~G~~GsGKTt~~~ 17 (148)
T cd03114 3 GITGVPGAGKSTLID 17 (148)
T ss_pred EEECCCCCcHHHHHH
Confidence 346789999999977
No 402
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=42.72 E-value=24 Score=34.11 Aligned_cols=15 Identities=33% Similarity=0.698 Sum_probs=12.3
Q ss_pred CCCceEEEEecCCCc
Q 045618 94 RRTKVLIVLDDVNKV 108 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~ 108 (349)
.++++|+++||+-.-
T Consensus 252 ~G~~Vll~~DslTr~ 266 (450)
T PRK06002 252 RGENVLLIVDSVTRF 266 (450)
T ss_pred cCCCEEEeccchHHH
Confidence 479999999999543
No 403
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=42.66 E-value=38 Score=34.95 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=26.1
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCCCCCCcEEEEEeCcc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLERFGPGSRIIVTTRDR 134 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~~~~IlvTTR~~ 134 (349)
.+.+.+-.++-+++||..-+ .+.-+.+...+......+.|+||-|..
T Consensus 621 alARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~ 670 (708)
T TIGR01193 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLS 670 (708)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchH
Confidence 66777777888899999863 222222222222112345566666654
No 404
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=42.63 E-value=13 Score=31.18 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=25.8
Q ss_pred CCHHHHHHHHhCCCceEEEEecCCCchhHHHHHc
Q 045618 83 PNLPEYVRERLRRTKVLIVLDDVNKVGQLEYLIG 116 (349)
Q Consensus 83 ~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~ 116 (349)
.+..+.++..++..+=.++++.+.+.+.+..+..
T Consensus 87 ~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a 120 (186)
T cd01130 87 VTMADLLRSALRMRPDRIIVGEVRGGEALDLLQA 120 (186)
T ss_pred cCHHHHHHHHhccCCCEEEEEccCcHHHHHHHHH
Confidence 3556678888888888999999998877665443
No 405
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=42.43 E-value=12 Score=30.80 Aligned_cols=18 Identities=17% Similarity=0.015 Sum_probs=14.1
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
..+||=|+||||++...-
T Consensus 9 ~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 9 FITGRPGVGKTTLVLKIA 26 (179)
T ss_pred EEeCCCCccHHHHHHHHH
Confidence 367788999999988443
No 406
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=42.25 E-value=11 Score=35.64 Aligned_cols=10 Identities=20% Similarity=0.036 Sum_probs=9.3
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||+|.
T Consensus 114 GGvGKTT~a~ 123 (387)
T TIGR03453 114 GGSGKTTTAA 123 (387)
T ss_pred CCcCHHHHHH
Confidence 9999999976
No 407
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=42.19 E-value=13 Score=30.08 Aligned_cols=16 Identities=6% Similarity=-0.303 Sum_probs=13.1
Q ss_pred ccCCCCCchhhHHHHH
Q 045618 15 NRATSCGIVKIRRCLM 30 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~ 30 (349)
-..|.+|+|||+|...
T Consensus 4 ~vvG~~gvGKTsli~~ 19 (158)
T cd04103 4 GIVGNLQSGKSALVHR 19 (158)
T ss_pred EEECCCCCcHHHHHHH
Confidence 3567899999999864
No 408
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=42.12 E-value=13 Score=30.67 Aligned_cols=17 Identities=6% Similarity=-0.216 Sum_probs=13.8
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|-||||+|+..-
T Consensus 7 l~G~~gsGKst~a~~l~ 23 (175)
T cd00227 7 LNGGSSAGKSSIARALQ 23 (175)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 46788999999999544
No 409
>PRK14738 gmk guanylate kinase; Provisional
Probab=42.08 E-value=13 Score=31.79 Aligned_cols=17 Identities=12% Similarity=-0.089 Sum_probs=13.9
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..||.|.|||||+....
T Consensus 18 i~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 18 ISGPSGVGKDAVLARMR 34 (206)
T ss_pred EECcCCCCHHHHHHHHH
Confidence 56889999999987543
No 410
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=42.04 E-value=13 Score=29.70 Aligned_cols=16 Identities=19% Similarity=-0.149 Sum_probs=13.2
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|++|+|||+++...
T Consensus 5 v~G~~~vGKTsli~~l 20 (161)
T cd04113 5 IIGSSGTGKSCLLHRF 20 (161)
T ss_pred EECCCCCCHHHHHHHH
Confidence 4678999999998754
No 411
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=41.51 E-value=1e+02 Score=26.47 Aligned_cols=43 Identities=14% Similarity=0.270 Sum_probs=25.6
Q ss_pred CCceEEEEecC---CCchh----HHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 95 RTKVLIVLDDV---NKVGQ----LEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 95 ~~~~LlVlDdv---~~~~~----~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
..+.|+++|.. -+..+ ...+...+.. ..++.+|++|...++..
T Consensus 108 ~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~-~~~~~vi~~TH~~~l~~ 157 (216)
T cd03284 108 TERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHE-KIGAKTLFATHYHELTE 157 (216)
T ss_pred CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHh-ccCCcEEEEeCcHHHHH
Confidence 57899999998 32222 2333333322 23678899998866533
No 412
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=41.50 E-value=27 Score=36.01 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=26.8
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCCCCCCcEEEEEeCcch
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLERFGPGSRIIVTTRDRR 135 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~~~~IlvTTR~~~ 135 (349)
.+.+.+-.++=+++||+.-+ ...-+.+...+.. .+.+.|+||-|...
T Consensus 625 aLARall~~p~iliLDEptS~LD~~te~~i~~~l~~-~~~T~IiitHrl~~ 674 (710)
T TIGR03796 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRR-RGCTCIIVAHRLST 674 (710)
T ss_pred HHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh-cCCEEEEEecCHHH
Confidence 66777777888899999863 2222333333322 24556666666543
No 413
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=41.38 E-value=12 Score=30.06 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=13.0
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
.+|.+|+|||+++...
T Consensus 4 vvG~~~vGKtsl~~~~ 19 (162)
T PF00071_consen 4 VVGDSGVGKTSLINRL 19 (162)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4678999999999743
No 414
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=41.35 E-value=78 Score=28.06 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEe
Q 045618 81 RTPNLPEYVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTT 131 (349)
Q Consensus 81 ~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTT 131 (349)
...+..+.+...|+...=.++++.+.+.+.+..+... ..|..+-+||
T Consensus 182 ~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT 228 (270)
T PF00437_consen 182 DEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTT 228 (270)
T ss_dssp TTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEE
T ss_pred CcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeee
Confidence 3446666888889988889999999998887775444 3455552444
No 415
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=41.29 E-value=77 Score=20.91 Aligned_cols=41 Identities=10% Similarity=0.209 Sum_probs=33.5
Q ss_pred CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecH
Q 045618 251 QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHD 291 (349)
Q Consensus 251 ~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~ 291 (349)
++...+....... ......++.|.+.++|.....+.|.+.+
T Consensus 26 ~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~~~~~~~~l~~ 67 (67)
T cd00092 26 LTRQEIADYLGLTRETVSRTLKELEEEGLISRRGRGKYRVNP 67 (67)
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCeEEeCC
Confidence 7778888888777 7788899999999999987557787653
No 416
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=41.15 E-value=14 Score=33.23 Aligned_cols=14 Identities=14% Similarity=-0.014 Sum_probs=11.4
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|++|.||||.+.
T Consensus 77 l~G~~G~GKTTt~a 90 (272)
T TIGR00064 77 FVGVNGVGKTTTIA 90 (272)
T ss_pred EECCCCCcHHHHHH
Confidence 45679999999866
No 417
>PRK06217 hypothetical protein; Validated
Probab=41.11 E-value=14 Score=30.81 Aligned_cols=15 Identities=7% Similarity=-0.152 Sum_probs=12.4
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|+.|-||||+|+.
T Consensus 6 i~G~~GsGKSTla~~ 20 (183)
T PRK06217 6 ITGASGSGTTTLGAA 20 (183)
T ss_pred EECCCCCCHHHHHHH
Confidence 556789999999983
No 418
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=41.02 E-value=1.3e+02 Score=31.13 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=14.5
Q ss_pred HHHHHhCCCceEEEEecCC
Q 045618 88 YVRERLRRTKVLIVLDDVN 106 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~ 106 (349)
.+.+.+-.++-++|||+.-
T Consensus 627 alARALl~~p~ILILDEpT 645 (711)
T TIGR00958 627 AIARALVRKPRVLILDEAT 645 (711)
T ss_pred HHHHHHhcCCCEEEEEccc
Confidence 5566666777889999985
No 419
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=40.94 E-value=20 Score=29.55 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=13.8
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|.||||+|+....
T Consensus 4 i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 4 VLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 357789999999885443
No 420
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=40.88 E-value=27 Score=32.19 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=11.2
Q ss_pred CCCCCchhhHHHH
Q 045618 17 ATSCGIVKIRRCL 29 (349)
Q Consensus 17 ~~~gGiGKT~la~ 29 (349)
.+.||+|||+++.
T Consensus 95 ~gdsg~GKttllL 107 (402)
T COG3598 95 YGDSGVGKTTLLL 107 (402)
T ss_pred ecCCcccHhHHHH
Confidence 3779999999976
No 421
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.80 E-value=88 Score=32.57 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=22.0
Q ss_pred CCceEEEEecCCCchhHHHHHcccCCCC--CCcEEEEEeCcc
Q 045618 95 RTKVLIVLDDVNKVGQLEYLIGGLERFG--PGSRIIVTTRDR 134 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~--~~~~IlvTTR~~ 134 (349)
....+||||-.-..+++..+...+.... +-..+|+|==++
T Consensus 294 p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDE 335 (767)
T PRK14723 294 PVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDE 335 (767)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCC
Confidence 3567888887766666665554443211 234566664443
No 422
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=40.75 E-value=15 Score=29.24 Aligned_cols=19 Identities=11% Similarity=-0.134 Sum_probs=14.6
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
-..|.+|.|||++....+.
T Consensus 4 ~i~G~~~~GKStli~~l~~ 22 (162)
T cd04123 4 VLLGEGRVGKTSLVLRYVE 22 (162)
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 3567899999999875543
No 423
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=40.65 E-value=14 Score=30.88 Aligned_cols=17 Identities=18% Similarity=-0.011 Sum_probs=13.5
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
...|+.|-||||+|...
T Consensus 3 ~i~G~sgsGKttla~~l 19 (179)
T cd02028 3 GIAGPSGSGKTTFAKKL 19 (179)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 35678899999999843
No 424
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=40.63 E-value=13 Score=29.91 Aligned_cols=16 Identities=13% Similarity=-0.083 Sum_probs=13.2
Q ss_pred ccCCCCCchhhHHHHH
Q 045618 15 NRATSCGIVKIRRCLM 30 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~ 30 (349)
-..|.+|.|||+|+..
T Consensus 4 ~vvG~~~~GKtsl~~~ 19 (164)
T cd04101 4 AVVGDPAVGKTAFVQM 19 (164)
T ss_pred EEECCCCCCHHHHHHH
Confidence 4568899999999863
No 425
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=40.63 E-value=14 Score=30.39 Aligned_cols=17 Identities=12% Similarity=0.090 Sum_probs=13.8
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|.||||++....
T Consensus 6 l~G~~GsGKsTl~~~L~ 22 (180)
T TIGR03263 6 ISGPSGVGKSTLVKALL 22 (180)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56889999999998543
No 426
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=40.63 E-value=44 Score=28.24 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=31.7
Q ss_pred HHHHHhCC-CceEEEEecCC-----CchhHHHHHcccCCCCCCcEEEEEeCcch
Q 045618 88 YVRERLRR-TKVLIVLDDVN-----KVGQLEYLIGGLERFGPGSRIIVTTRDRR 135 (349)
Q Consensus 88 ~l~~~L~~-~~~LlVlDdv~-----~~~~~~~l~~~~~~~~~~~~IlvTTR~~~ 135 (349)
.-++.+.+ +--|+|||.+. +.-.++++...+........||+|-|..+
T Consensus 113 ~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap 166 (198)
T COG2109 113 HAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAP 166 (198)
T ss_pred HHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCC
Confidence 45556666 45599999984 33344555555544456889999998753
No 427
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=40.58 E-value=14 Score=32.01 Aligned_cols=16 Identities=13% Similarity=-0.110 Sum_probs=13.0
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
.+|..|.|||++|+..
T Consensus 17 iyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 17 IYGKPGTGKTSTIKYL 32 (220)
T ss_pred EECCCCCCHHHHHHhc
Confidence 5667899999999743
No 428
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=40.48 E-value=15 Score=29.25 Aligned_cols=16 Identities=19% Similarity=0.034 Sum_probs=12.8
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|.|||+++...
T Consensus 4 i~G~~G~GKT~l~~~i 19 (165)
T cd01120 4 VFGPTGSGKTTLALQL 19 (165)
T ss_pred EeCCCCCCHHHHHHHH
Confidence 4577899999998743
No 429
>PLN03232 ABC transporter C family member; Provisional
Probab=40.48 E-value=82 Score=35.78 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=15.3
Q ss_pred HHHHHhCCCceEEEEecCCC
Q 045618 88 YVRERLRRTKVLIVLDDVNK 107 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~ 107 (349)
.+.+.+-.+.=+++|||+-.
T Consensus 750 aLARAly~~~~IlLLDEptS 769 (1495)
T PLN03232 750 SMARAVYSNSDIYIFDDPLS 769 (1495)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 66666667777899999853
No 430
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=40.08 E-value=1.2e+02 Score=29.15 Aligned_cols=16 Identities=19% Similarity=0.048 Sum_probs=12.0
Q ss_pred CCCCchhhHHHHHHhh
Q 045618 18 TSCGIVKIRRCLMVFR 33 (349)
Q Consensus 18 ~~gGiGKT~la~~~f~ 33 (349)
|..|.||+++|+....
T Consensus 164 Ge~GtGK~~~A~~ih~ 179 (463)
T TIGR01818 164 GESGTGKELVARALHR 179 (463)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 4479999999985543
No 431
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=40.07 E-value=64 Score=29.30 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=31.2
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCC-cEEEEEeCcchhhcc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPG-SRIIVTTRDRRVLDN 139 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~-~~IlvTTR~~~~~~~ 139 (349)
.+...|-.+.-+++||.--. +. .+..++..+. ..+ ..|++||....-...
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~--~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELA--KEGGVTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH--hCCCcEEEEeCCcHHHHHH
Confidence 66777778889999999852 22 2222222222 223 689999987665444
No 432
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=39.85 E-value=88 Score=32.60 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=21.4
Q ss_pred CceEEEEecCCC--chhHHHHHcccCCCCCCcEEEEEe
Q 045618 96 TKVLIVLDDVNK--VGQLEYLIGGLERFGPGSRIIVTT 131 (349)
Q Consensus 96 ~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~IlvTT 131 (349)
+.-|||+|.+.- ...+..++.... ..+++||+.-
T Consensus 439 ~~~llIvDEasMv~~~~~~~Ll~~~~--~~~~kliLVG 474 (744)
T TIGR02768 439 DKDVLVIDEAGMVGSRQMARVLKEAE--EAGAKVVLVG 474 (744)
T ss_pred CCcEEEEECcccCCHHHHHHHHHHHH--hcCCEEEEEC
Confidence 567999999973 344555554321 3577777665
No 433
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=39.80 E-value=15 Score=31.37 Aligned_cols=16 Identities=19% Similarity=-0.047 Sum_probs=12.7
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|.+|+|||+++...
T Consensus 5 vlG~~gVGKTSli~r~ 20 (202)
T cd04120 5 IIGSRGVGKTSLMRRF 20 (202)
T ss_pred EECcCCCCHHHHHHHH
Confidence 3577899999998743
No 434
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=39.66 E-value=16 Score=29.37 Aligned_cols=18 Identities=11% Similarity=-0.108 Sum_probs=13.8
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+.|-|||||++..-.
T Consensus 6 liG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 6 LIGPSGSGKTTLAQALNG 23 (143)
T ss_pred EECCCCCCHHHHHHHHcC
Confidence 467789999999984433
No 435
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=39.62 E-value=14 Score=29.90 Aligned_cols=16 Identities=6% Similarity=-0.261 Sum_probs=13.1
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|.+|+|||+|+...
T Consensus 5 ~~G~~~~GKTsli~~l 20 (159)
T cd04150 5 MVGLDAAGKTTILYKL 20 (159)
T ss_pred EECCCCCCHHHHHHHH
Confidence 4678999999998753
No 436
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=39.47 E-value=15 Score=30.97 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=14.7
Q ss_pred hcccCCCCCchhhHHHHHH
Q 045618 13 ELNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~~~ 31 (349)
+.-..|++|+|||+|+...
T Consensus 8 kivvvG~~~vGKTsli~~l 26 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRF 26 (199)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3446788999999999744
No 437
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=39.42 E-value=14 Score=34.06 Aligned_cols=10 Identities=10% Similarity=-0.157 Sum_probs=9.3
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||+|.
T Consensus 103 GGvGkTT~a~ 112 (322)
T TIGR03815 103 GGAGASTLAA 112 (322)
T ss_pred CCCcHHHHHH
Confidence 9999999976
No 438
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=39.33 E-value=15 Score=31.99 Aligned_cols=19 Identities=16% Similarity=-0.027 Sum_probs=14.8
Q ss_pred hcccCCCCCchhhHHHHHH
Q 045618 13 ELNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~~~ 31 (349)
..+..|+.|-||||++...
T Consensus 35 iigi~G~~GsGKTTl~~~L 53 (229)
T PRK09270 35 IVGIAGPPGAGKSTLAEFL 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4556788999999998833
No 439
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=39.33 E-value=67 Score=30.33 Aligned_cols=13 Identities=38% Similarity=0.222 Sum_probs=10.4
Q ss_pred CCCchhhHHHHHH
Q 045618 19 SCGIVKIRRCLMV 31 (349)
Q Consensus 19 ~gGiGKT~la~~~ 31 (349)
+.|+|||+++.+.
T Consensus 90 ~pG~GKStLllq~ 102 (372)
T cd01121 90 DPGIGKSTLLLQV 102 (372)
T ss_pred CCCCCHHHHHHHH
Confidence 3599999998844
No 440
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=39.29 E-value=1e+02 Score=31.76 Aligned_cols=17 Identities=12% Similarity=-0.058 Sum_probs=12.9
Q ss_pred CCCCCchhhHHHHHHhh
Q 045618 17 ATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~ 33 (349)
.|.-|.|||.+|+..+.
T Consensus 405 ~GE~GTGK~~lA~~ih~ 421 (686)
T PRK15429 405 LGETGTGKELIARAIHN 421 (686)
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 34479999999996544
No 441
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=39.28 E-value=18 Score=28.91 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=14.2
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|++|.|||+++.....
T Consensus 6 v~G~~~~GKSsli~~l~~ 23 (163)
T cd01860 6 LLGDSSVGKSSLVLRFVK 23 (163)
T ss_pred EECCCCCCHHHHHHHHHc
Confidence 567899999999875543
No 442
>PRK03839 putative kinase; Provisional
Probab=38.99 E-value=22 Score=29.38 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=13.9
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|.||||+++....
T Consensus 5 l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 5 ITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456789999999985544
No 443
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=38.92 E-value=14 Score=35.35 Aligned_cols=10 Identities=20% Similarity=0.023 Sum_probs=9.2
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||.+.
T Consensus 131 GGvGKTTta~ 140 (405)
T PRK13869 131 GGSGKTTTSA 140 (405)
T ss_pred CCCCHHHHHH
Confidence 9999999876
No 444
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=38.74 E-value=16 Score=29.72 Aligned_cols=18 Identities=6% Similarity=-0.193 Sum_probs=14.2
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|++|+|||+|.....
T Consensus 6 ~vvG~~~vGKTsli~~~~ 23 (170)
T cd04115 6 IVIGDSNVGKTCLTYRFC 23 (170)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 356889999999987543
No 445
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=38.69 E-value=57 Score=30.02 Aligned_cols=19 Identities=16% Similarity=-0.181 Sum_probs=14.7
Q ss_pred cCCCCCchhhHHHHHHhhh
Q 045618 16 RATSCGIVKIRRCLMVFRL 34 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~ 34 (349)
..||-|-|||-+|+.++..
T Consensus 171 l~GppGtGKTlla~~Vaa~ 189 (388)
T KOG0651|consen 171 LYGPPGTGKTLLARAVAAT 189 (388)
T ss_pred EeCCCCCchhHHHHHHHHh
Confidence 4455699999999988764
No 446
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=38.61 E-value=16 Score=28.95 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=12.9
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|..|+|||+|+...
T Consensus 6 iiG~~~vGKTsl~~~~ 21 (162)
T cd04138 6 VVGAGGVGKSALTIQL 21 (162)
T ss_pred EECCCCCCHHHHHHHH
Confidence 4677899999998643
No 447
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=38.60 E-value=1.9e+02 Score=22.66 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=10.7
Q ss_pred CCCCCchhhHHHH
Q 045618 17 ATSCGIVKIRRCL 29 (349)
Q Consensus 17 ~~~gGiGKT~la~ 29 (349)
..-||.|||+++.
T Consensus 6 ~~kgg~gkt~~~~ 18 (139)
T cd02038 6 SGKGGVGKTNISA 18 (139)
T ss_pred cCCCCCcHHHHHH
Confidence 3459999999977
No 448
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=38.18 E-value=15 Score=29.74 Aligned_cols=18 Identities=11% Similarity=-0.112 Sum_probs=14.0
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|+.|.|||+++....
T Consensus 4 ~viG~~~~GKSsl~~~l~ 21 (172)
T cd01862 4 IILGDSGVGKTSLMNQYV 21 (172)
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 356889999999987443
No 449
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=38.06 E-value=91 Score=28.09 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=12.1
Q ss_pred CCCceEEEEecCCCc
Q 045618 94 RRTKVLIVLDDVNKV 108 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~ 108 (349)
.++++|+++||+-..
T Consensus 164 ~g~~VLl~~D~ltr~ 178 (276)
T cd01135 164 KGKHVLVILTDMTNY 178 (276)
T ss_pred cCCeEEEEEcChhHH
Confidence 368999999998643
No 450
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=37.97 E-value=17 Score=29.56 Aligned_cols=17 Identities=12% Similarity=-0.246 Sum_probs=13.4
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|.+|+|||++.....
T Consensus 4 ivG~~~vGKTsli~~~~ 20 (164)
T cd04162 4 VLGLDGAGKTSLLHSLS 20 (164)
T ss_pred EECCCCCCHHHHHHHHh
Confidence 45789999999987543
No 451
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=37.88 E-value=3.2e+02 Score=24.94 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=56.7
Q ss_pred CCceEEEEecCCCch--hHHHHHcccCCCCCCcEEEEEeCcc-hhhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKVG--QLEYLIGGLERFGPGSRIIVTTRDR-RVLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+.+-++|+|+++... ....|+..+..-.+++.+|++|.+. .+...+ .-...+++.+++.++..+.+.... .
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~----~- 163 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKN----K- 163 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcC----C-
Confidence 467788999997653 3556666665556677777655443 344333 235689999999999887776531 1
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRVL 195 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~~ 195 (349)
+ .+.+..++...+|.--|+..+
T Consensus 164 ~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 164 E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred C---hhHHHHHHHHcCCHHHHHHHH
Confidence 1 133455555566633455443
No 452
>PRK13695 putative NTPase; Provisional
Probab=37.87 E-value=20 Score=29.53 Aligned_cols=17 Identities=18% Similarity=0.088 Sum_probs=13.6
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|.||||++...+
T Consensus 5 ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 5 ITGPPGVGKTTLVLKIA 21 (174)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 46788999999988543
No 453
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=37.72 E-value=15 Score=30.50 Aligned_cols=19 Identities=11% Similarity=-0.262 Sum_probs=14.6
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
+-..|++|.|||+|+....
T Consensus 22 i~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 22 ILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3466779999999988543
No 454
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=37.58 E-value=79 Score=32.91 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=41.1
Q ss_pred CCceEEEEecCCC-----------chhHHHHHcccCCCCCCcEEEEEeCcchh--hc----ccCcccEEEcCCCChHhHH
Q 045618 95 RTKVLIVLDDVNK-----------VGQLEYLIGGLERFGPGSRIIVTTRDRRV--LD----NFGVGNIYKVNGLKYREAL 157 (349)
Q Consensus 95 ~~~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~~~~IlvTTR~~~~--~~----~~~~~~~~~l~~L~~~ea~ 157 (349)
..+..|.+|.++. .+.-.-+.|.+.. +.--.|=.||-++-- .. ...--+.+.+.+.+.+++.
T Consensus 261 ~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti 339 (786)
T COG0542 261 SKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTI 339 (786)
T ss_pred CCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHH
Confidence 3589999999962 1233444565532 333345666644321 00 0112347899999999999
Q ss_pred HHHHHhh
Q 045618 158 ELFCNCA 164 (349)
Q Consensus 158 ~L~~~~a 164 (349)
.+++...
T Consensus 340 ~ILrGlk 346 (786)
T COG0542 340 AILRGLK 346 (786)
T ss_pred HHHHHHH
Confidence 9988544
No 455
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=37.53 E-value=17 Score=29.32 Aligned_cols=15 Identities=13% Similarity=-0.077 Sum_probs=12.6
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|++|+|||+|...
T Consensus 5 vvG~~~~GKTsli~~ 19 (161)
T cd04117 5 LIGDSGVGKTCLLCR 19 (161)
T ss_pred EECcCCCCHHHHHHH
Confidence 567899999999863
No 456
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=37.48 E-value=17 Score=29.27 Aligned_cols=16 Identities=6% Similarity=-0.124 Sum_probs=12.7
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|..|+|||+|+...
T Consensus 5 vvG~~~vGKTsli~~~ 20 (161)
T cd04124 5 LLGDSAVGKSKLVERF 20 (161)
T ss_pred EECCCCCCHHHHHHHH
Confidence 4577899999998743
No 457
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=37.46 E-value=15 Score=29.63 Aligned_cols=17 Identities=18% Similarity=-0.011 Sum_probs=13.6
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
-.+|.+|+|||+|....
T Consensus 5 ~~vG~~~vGKTsli~~~ 21 (165)
T cd04140 5 VVFGAGGVGKSSLVLRF 21 (165)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 35788999999998743
No 458
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=37.41 E-value=16 Score=29.72 Aligned_cols=18 Identities=6% Similarity=-0.267 Sum_probs=12.0
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|.|||||+.....
T Consensus 4 i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 4 ITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EE--TTSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456679999999984433
No 459
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=37.31 E-value=79 Score=31.60 Aligned_cols=19 Identities=11% Similarity=0.363 Sum_probs=13.4
Q ss_pred HHHHHhCCCceEEEEecCC
Q 045618 88 YVRERLRRTKVLIVLDDVN 106 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~ 106 (349)
.+.+.+-.++=++++|+.-
T Consensus 486 ~laRal~~~~~ililDEpt 504 (576)
T TIGR02204 486 AIARAILKDAPILLLDEAT 504 (576)
T ss_pred HHHHHHHhCCCeEEEeCcc
Confidence 5555555666678899985
No 460
>TIGR00281 segregation and condensation protein B. Shown to be required for chromosome segregation and condensation in B. subtilis.
Probab=37.28 E-value=1.5e+02 Score=25.06 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=34.8
Q ss_pred CChhHHHHHHHhcccCCCCCHHHHHHHhcccccHHHhHHHHhhCcceEEc
Q 045618 233 IKAEEKSLFLDIACFFNGQDKDSVLKMIGDSSFAHYGLNVLVDKSLVTVS 282 (349)
Q Consensus 233 L~~~~~~~f~~la~fp~~~~~~~l~~~~~~~~~~~~~l~~L~~~sLl~~~ 282 (349)
|+...-..+..+|.- +++++..+..+=+. .....++.|++++||...
T Consensus 85 LS~aaLEtLAIIAY~-QPITr~eIe~IRGv--~s~~~l~~L~ergLI~~~ 131 (186)
T TIGR00281 85 LNSASLEVLAIIAYK-QPITRARINEIRGV--KSYQIVDDLVEKGLVVEL 131 (186)
T ss_pred CCHHHHHHHHHHHHc-CCcCHHHHHHHcCC--CHHHHHHHHHHCCCeEec
Confidence 555555555555543 57888888887776 467789999999999976
No 461
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=37.26 E-value=17 Score=29.22 Aligned_cols=17 Identities=18% Similarity=-0.041 Sum_probs=13.6
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
-..|++|+|||++....
T Consensus 6 ~i~G~~~vGKSsli~~~ 22 (166)
T cd01869 6 LLIGDSGVGKSCLLLRF 22 (166)
T ss_pred EEECCCCCCHHHHHHHH
Confidence 35688999999998743
No 462
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=37.23 E-value=17 Score=29.46 Aligned_cols=14 Identities=7% Similarity=-0.109 Sum_probs=12.1
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
..|.+|+|||+|+.
T Consensus 5 i~G~~~~GKTsl~~ 18 (174)
T cd04135 5 VVGDGAVGKTCLLM 18 (174)
T ss_pred EECCCCCCHHHHHH
Confidence 56789999999986
No 463
>PRK11670 antiporter inner membrane protein; Provisional
Probab=37.20 E-value=16 Score=34.54 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=9.3
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||.+.
T Consensus 117 GGVGKTT~av 126 (369)
T PRK11670 117 GGVGKSSTAV 126 (369)
T ss_pred CCCCHHHHHH
Confidence 9999999976
No 464
>PRK12338 hypothetical protein; Provisional
Probab=37.03 E-value=24 Score=32.54 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=16.5
Q ss_pred cCCCCCchhhHHHHHHhhhhcceee
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECL 40 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~ 40 (349)
..|+.|.||||+|...-....+.++
T Consensus 9 i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 9 IGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred EECCCCCCHHHHHHHHHHHCCCeEE
Confidence 4566899999999854443334333
No 465
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=37.03 E-value=24 Score=34.17 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=15.0
Q ss_pred HHHHHhC---CCceEEEEecCCC
Q 045618 88 YVRERLR---RTKVLIVLDDVNK 107 (349)
Q Consensus 88 ~l~~~L~---~~~~LlVlDdv~~ 107 (349)
.+.++++ ++++||++||+-.
T Consensus 221 tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 221 TMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHhcCCceEEEecChHH
Confidence 4555554 5899999999954
No 466
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=36.97 E-value=1.1e+02 Score=25.43 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=35.8
Q ss_pred CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 251 QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 251 ~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
++.+.+..+.+.. ......+.+|.+.++|... .+++.++|.
T Consensus 150 ~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~-~~~i~I~d~ 191 (202)
T PRK13918 150 ATHDELAAAVGSVRETVTKVIGELSREGYIRSG-YGKIQLLDL 191 (202)
T ss_pred CCHHHHHHHhCccHHHHHHHHHHHHHCCCEEcC-CCEEEEECH
Confidence 7788999999888 7888899999999999965 788999885
No 467
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=36.90 E-value=16 Score=28.57 Aligned_cols=16 Identities=19% Similarity=-0.112 Sum_probs=13.0
Q ss_pred ccCCCCCchhhHHHHH
Q 045618 15 NRATSCGIVKIRRCLM 30 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~ 30 (349)
-..|..|+|||+|...
T Consensus 4 ~liG~~~vGKSsL~~~ 19 (142)
T TIGR02528 4 MFIGSVGCGKTTLTQA 19 (142)
T ss_pred EEECCCCCCHHHHHHH
Confidence 3567889999999874
No 468
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=36.86 E-value=1.7e+02 Score=24.08 Aligned_cols=17 Identities=12% Similarity=-0.187 Sum_probs=12.5
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|.||||+|....
T Consensus 23 i~G~~GsGKstla~~l~ 39 (184)
T TIGR00455 23 LTGLSGSGKSTIANALE 39 (184)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 34446999999998544
No 469
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=36.77 E-value=18 Score=30.08 Aligned_cols=18 Identities=6% Similarity=-0.236 Sum_probs=14.2
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
+-.+|++|+|||+|+...
T Consensus 20 v~lvG~~~vGKTsli~~~ 37 (182)
T PTZ00133 20 ILMVGLDAAGKTTILYKL 37 (182)
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 336778999999998754
No 470
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=36.32 E-value=19 Score=30.02 Aligned_cols=17 Identities=24% Similarity=-0.017 Sum_probs=13.7
Q ss_pred cccCCCCCchhhHHHHH
Q 045618 14 LNRATSCGIVKIRRCLM 30 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~ 30 (349)
...+|+.|-|||||+..
T Consensus 9 i~ivG~sgsGKTTLi~~ 25 (173)
T PRK10751 9 LAIAAWSGTGKTTLLKK 25 (173)
T ss_pred EEEECCCCChHHHHHHH
Confidence 45677789999999873
No 471
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=36.25 E-value=1.1e+02 Score=18.93 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=30.9
Q ss_pred hhHHHHHHHhcccCCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceE
Q 045618 235 AEEKSLFLDIACFFNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVT 280 (349)
Q Consensus 235 ~~~~~~f~~la~fp~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~ 280 (349)
+..+..+.++.-- ++.+...+.....-. -.+...++.|.+.++|+
T Consensus 3 ~~~~~Il~~l~~~-~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 3 ETQRKILNYLREN-PRITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHHC-TTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 3445555554442 228888888888877 77888999999999874
No 472
>PRK00625 shikimate kinase; Provisional
Probab=36.10 E-value=26 Score=29.05 Aligned_cols=18 Identities=6% Similarity=-0.232 Sum_probs=13.9
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|.||||+++..-.
T Consensus 5 LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 5 LCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 457789999999985543
No 473
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=36.00 E-value=19 Score=29.25 Aligned_cols=15 Identities=7% Similarity=-0.132 Sum_probs=12.3
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|.+|+|||++...
T Consensus 3 i~G~~~vGKTsli~~ 17 (174)
T smart00174 3 VVGDGAVGKTCLLIS 17 (174)
T ss_pred EECCCCCCHHHHHHH
Confidence 357789999999874
No 474
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=35.96 E-value=14 Score=32.13 Aligned_cols=14 Identities=14% Similarity=0.117 Sum_probs=10.3
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
++|-||+||||...
T Consensus 8 TSGKGGVGKTTttA 21 (272)
T COG2894 8 TSGKGGVGKTTTTA 21 (272)
T ss_pred ecCCCCcCccchhH
Confidence 34559999998743
No 475
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=35.82 E-value=27 Score=28.53 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=16.0
Q ss_pred cCCCCCchhhHHHHHHhhhhcc
Q 045618 16 RATSCGIVKIRRCLMVFRLCST 37 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w 37 (349)
..|+.|-||||+++..-....|
T Consensus 7 ~~G~~GsGKst~~~~la~~lg~ 28 (171)
T PRK03731 7 LVGARGCGKTTVGMALAQALGY 28 (171)
T ss_pred EECCCCCCHHHHHHHHHHHhCC
Confidence 5677899999999855444334
No 476
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=35.73 E-value=19 Score=28.67 Aligned_cols=15 Identities=20% Similarity=0.029 Sum_probs=12.3
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|..|+|||+|+..
T Consensus 6 i~G~~~vGKTsl~~~ 20 (163)
T cd04136 6 VLGSGGVGKSALTVQ 20 (163)
T ss_pred EECCCCCCHHHHHHH
Confidence 467789999999764
No 477
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=35.65 E-value=25 Score=29.26 Aligned_cols=16 Identities=13% Similarity=-0.074 Sum_probs=13.6
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
.+||.|.|||+++...
T Consensus 7 l~Gpsg~GK~~l~~~L 22 (183)
T PF00625_consen 7 LVGPSGSGKSTLAKRL 22 (183)
T ss_dssp EESSTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5788999999999844
No 478
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=35.61 E-value=17 Score=29.30 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=12.3
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|..|+|||+|+..
T Consensus 4 vvG~~~~GKtsli~~ 18 (165)
T cd04146 4 VLGASGVGKSALVVR 18 (165)
T ss_pred EECCCCCcHHHHHHH
Confidence 467889999999854
No 479
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=35.36 E-value=19 Score=32.20 Aligned_cols=15 Identities=20% Similarity=-0.024 Sum_probs=12.1
Q ss_pred ccCCCCCchhhHHHH
Q 045618 15 NRATSCGIVKIRRCL 29 (349)
Q Consensus 15 ~~~~~gGiGKT~la~ 29 (349)
..+|=|||||+|.+.
T Consensus 4 AiYGKGGIGKST~~~ 18 (273)
T PF00142_consen 4 AIYGKGGIGKSTTAS 18 (273)
T ss_dssp EEEESTTSSHHHHHH
T ss_pred EEEcCCCcccChhhh
Confidence 356679999999976
No 480
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=35.25 E-value=20 Score=32.19 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=10.3
Q ss_pred CCCCchhhHHHHH
Q 045618 18 TSCGIVKIRRCLM 30 (349)
Q Consensus 18 ~~gGiGKT~la~~ 30 (349)
|+=||||||+++.
T Consensus 1 G~~GvGKTT~~~~ 13 (281)
T PF00693_consen 1 GAMGVGKTTTLKA 13 (281)
T ss_dssp SSTTSSHHHHHHH
T ss_pred CCCCcCHHHHHHH
Confidence 3559999999873
No 481
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=35.24 E-value=18 Score=28.78 Aligned_cols=18 Identities=11% Similarity=-0.151 Sum_probs=14.2
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
...|..|.|||+|.....
T Consensus 3 ~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 3 AFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEcCCCCCHHHHHHHHh
Confidence 356778999999998554
No 482
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=35.18 E-value=25 Score=26.83 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=13.4
Q ss_pred CCCCCchhhHHHHHHhh
Q 045618 17 ATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~ 33 (349)
.|+.|.|||+|+.....
T Consensus 2 iG~~~~GKStl~~~l~~ 18 (157)
T cd00882 2 VGDSGVGKTSLLNRLLG 18 (157)
T ss_pred CCcCCCcHHHHHHHHHh
Confidence 57789999999985543
No 483
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=35.04 E-value=55 Score=31.67 Aligned_cols=13 Identities=23% Similarity=0.578 Sum_probs=11.3
Q ss_pred CCCceEEEEecCC
Q 045618 94 RRTKVLIVLDDVN 106 (349)
Q Consensus 94 ~~~~~LlVlDdv~ 106 (349)
.++++||++||+-
T Consensus 246 ~g~~Vll~~Dslt 258 (438)
T PRK07721 246 QGLNVMLMMDSVT 258 (438)
T ss_pred CCCcEEEEEeChH
Confidence 4799999999984
No 484
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=34.93 E-value=17 Score=31.10 Aligned_cols=18 Identities=17% Similarity=-0.018 Sum_probs=14.6
Q ss_pred hhcccCCCCCchhhHHHH
Q 045618 12 AELNRATSCGIVKIRRCL 29 (349)
Q Consensus 12 ~~~~~~~~gGiGKT~la~ 29 (349)
-+....|+.|.|||+|..
T Consensus 10 ~kv~liG~~g~GKTtLi~ 27 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVK 27 (215)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 355677889999999995
No 485
>PRK15115 response regulator GlrR; Provisional
Probab=34.77 E-value=50 Score=31.75 Aligned_cols=18 Identities=11% Similarity=-0.038 Sum_probs=13.5
Q ss_pred CCCCCchhhHHHHHHhhh
Q 045618 17 ATSCGIVKIRRCLMVFRL 34 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~~ 34 (349)
.|..|.|||++|+.....
T Consensus 163 ~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 163 NGQSGTGKEILAQAIHNA 180 (444)
T ss_pred EcCCcchHHHHHHHHHHh
Confidence 455799999999865543
No 486
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=34.66 E-value=20 Score=29.66 Aligned_cols=15 Identities=7% Similarity=-0.210 Sum_probs=12.4
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|.+|+|||+|+..
T Consensus 6 ~vG~~~vGKTsli~~ 20 (178)
T cd04131 6 VVGDVQCGKTALLQV 20 (178)
T ss_pred EECCCCCCHHHHHHH
Confidence 467789999999874
No 487
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=34.54 E-value=21 Score=29.31 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=12.7
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|..|+|||+|+...
T Consensus 7 vvG~~~vGKTsL~~~~ 22 (172)
T cd04141 7 MLGAGGVGKSAVTMQF 22 (172)
T ss_pred EECCCCCcHHHHHHHH
Confidence 4677899999998643
No 488
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=34.52 E-value=1.6e+02 Score=24.26 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=36.4
Q ss_pred CCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 250 GQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 250 ~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
+++...+..+.+.. ......+.+|.+.++|... .+++.+.|.
T Consensus 143 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~-~~~i~I~d~ 185 (193)
T TIGR03697 143 RLSHQAIAEAIGSTRVTITRLLGDLRKKKLISIH-KKKITVHDP 185 (193)
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEec-CCEEEEeCH
Confidence 37889999999988 8888999999999999987 678888775
No 489
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=34.50 E-value=1.3e+02 Score=24.35 Aligned_cols=61 Identities=18% Similarity=0.185 Sum_probs=43.7
Q ss_pred hHHHHHHHhcccCCC-CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC--CCe---------EEecHHHHHH
Q 045618 236 EEKSLFLDIACFFNG-QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR--GNQ---------LQMHDLLQEM 296 (349)
Q Consensus 236 ~~~~~f~~la~fp~~-~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~--~~~---------~~mH~lv~~~ 296 (349)
..-+++.++|..+.. ++...+.....-. ......+..|.+.++|.... +|. +++-|+++-+
T Consensus 9 YAlr~L~~LA~~~~~~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~~GGy~La~~p~eItl~dIi~av 82 (153)
T PRK11920 9 YAIRMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGRNGGVRLGRPAADISLFDVVRVT 82 (153)
T ss_pred HHHHHHHHHHhCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeeecCCHHHCcHHHHHHHH
Confidence 446678888877665 6677777666665 66778899999999999654 222 5666776654
No 490
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=34.46 E-value=18 Score=30.06 Aligned_cols=18 Identities=11% Similarity=-0.158 Sum_probs=14.1
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
+-..|+.|.|||+|....
T Consensus 4 i~ivG~~g~GKStLl~~l 21 (187)
T cd04129 4 LVIVGDGACGKTSLLSVF 21 (187)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 346788999999998743
No 491
>PF03849 Tfb2: Transcription factor Tfb2; InterPro: IPR004598 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p52 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.39 E-value=1.9e+02 Score=27.20 Aligned_cols=76 Identities=11% Similarity=0.092 Sum_probs=57.7
Q ss_pred HhHhcCChhHHHHHHHhcccCCCCCHHHHHHHhccc---ccHHHhHHHHhhCcceEEcC-C---CeEEecHHHHHHHHHH
Q 045618 228 ISYNEIKAEEKSLFLDIACFFNGQDKDSVLKMIGDS---SFAHYGLNVLVDKSLVTVSR-G---NQLQMHDLLQEMGREI 300 (349)
Q Consensus 228 ~s~~~L~~~~~~~f~~la~fp~~~~~~~l~~~~~~~---~~~~~~l~~L~~~sLl~~~~-~---~~~~mH~lv~~~a~~~ 300 (349)
.-|..||+-+|++.+.+-+.+.+++... .+.|... ..-+.+++.|.+..+++... + ..|.+++..+.=.+..
T Consensus 23 AIfR~LP~LAK~~VmrLL~~~~pv~~~~-l~~Wv~~~~~~~~~~al~~L~~L~Ii~~~~~~~~~~~~~Ln~~F~~~Lr~a 101 (366)
T PF03849_consen 23 AIFRSLPPLAKQYVMRLLFVEQPVPQAD-LESWVKPESKKEHDEALKRLRSLHIIQESESPGGKQQYQLNPIFRKNLRNA 101 (366)
T ss_pred HHHHhccHHHHHHHHHHHhcCCCcCHHH-HHHHhCccchHHHHHHHHHHhhCeeEeeccCCCCceeEEeCHHHHHHHHHH
Confidence 3456899999999888888888888755 4566655 45678899999999998654 2 3599999998877766
Q ss_pred Hhhh
Q 045618 301 VRQE 304 (349)
Q Consensus 301 ~~~e 304 (349)
+...
T Consensus 102 L~gg 105 (366)
T PF03849_consen 102 LTGG 105 (366)
T ss_pred HhCC
Confidence 5433
No 492
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=34.39 E-value=80 Score=30.22 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=14.9
Q ss_pred CHHHHHHHHhCCCceEEEEecCC
Q 045618 84 NLPEYVRERLRRTKVLIVLDDVN 106 (349)
Q Consensus 84 ~~~~~l~~~L~~~~~LlVlDdv~ 106 (349)
+++..+...-..+.-|+|+|-+.
T Consensus 156 ~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 156 NLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred CHHHHHHHHHhcCCCEEEEeccc
Confidence 34444444444578899999984
No 493
>PRK06936 type III secretion system ATPase; Provisional
Probab=34.34 E-value=35 Score=32.95 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=12.5
Q ss_pred CCCceEEEEecCCCc
Q 045618 94 RRTKVLIVLDDVNKV 108 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~ 108 (349)
.++++||++||+-.-
T Consensus 250 ~G~~Vll~~DslTR~ 264 (439)
T PRK06936 250 QGKRVLLLMDSVTRF 264 (439)
T ss_pred cCCCEEEeccchhHH
Confidence 479999999999643
No 494
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=34.21 E-value=94 Score=25.85 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=26.3
Q ss_pred CceEEEEecCCCc---hh----HHHHHcccCCCCCCcEEEEEeCcchhhcc
Q 045618 96 TKVLIVLDDVNKV---GQ----LEYLIGGLERFGPGSRIIVTTRDRRVLDN 139 (349)
Q Consensus 96 ~~~LlVlDdv~~~---~~----~~~l~~~~~~~~~~~~IlvTTR~~~~~~~ 139 (349)
++.|+++|..-.. .. ...+...+.. ..++.+|++|...++...
T Consensus 78 ~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~ 127 (185)
T smart00534 78 ENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKL 127 (185)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHH
Confidence 7889999998532 21 2223332221 236789999988876554
No 495
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=33.98 E-value=23 Score=30.34 Aligned_cols=15 Identities=13% Similarity=-0.053 Sum_probs=11.9
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|+.|.|||+++..
T Consensus 24 i~G~~GsGKT~l~~~ 38 (218)
T cd01394 24 VYGPPGTGKTNIAIQ 38 (218)
T ss_pred EECCCCCCHHHHHHH
Confidence 445589999999874
No 496
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=33.90 E-value=21 Score=29.07 Aligned_cols=18 Identities=6% Similarity=-0.328 Sum_probs=13.9
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|.+|.|||+|+....
T Consensus 18 ~ivG~~~~GKTsL~~~l~ 35 (173)
T cd04154 18 LILGLDNAGKTTILKKLL 35 (173)
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 366779999999987443
No 497
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=33.89 E-value=31 Score=33.31 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=12.5
Q ss_pred CCCceEEEEecCCCc
Q 045618 94 RRTKVLIVLDDVNKV 108 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~ 108 (349)
.++++||++||+-.-
T Consensus 250 ~G~~VLl~~DslTR~ 264 (444)
T PRK08972 250 QGLNVLLLMDSLTRY 264 (444)
T ss_pred cCCCEEEEEcChHHH
Confidence 579999999999543
No 498
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=33.84 E-value=21 Score=29.16 Aligned_cols=17 Identities=12% Similarity=-0.002 Sum_probs=13.7
Q ss_pred cccCCCCCchhhHHHHH
Q 045618 14 LNRATSCGIVKIRRCLM 30 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~ 30 (349)
+-.+|..|+|||+|+..
T Consensus 7 i~ivG~~~vGKTsli~~ 23 (180)
T cd04127 7 FLALGDSGVGKTSFLYQ 23 (180)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34678899999999874
No 499
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=33.67 E-value=21 Score=31.42 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=16.2
Q ss_pred HHHHHhCCCceEEEEecCCC
Q 045618 88 YVRERLRRTKVLIVLDDVNK 107 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~ 107 (349)
.+.+.|....=+|.+|.-..
T Consensus 140 aiARAL~~~P~lLLlDEPFg 159 (248)
T COG1116 140 AIARALATRPKLLLLDEPFG 159 (248)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 77788888888899998753
No 500
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.65 E-value=2.4e+02 Score=25.27 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=11.6
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
..|+.|.|||+++.
T Consensus 80 ~~G~~g~GKTtl~~ 93 (270)
T PRK06731 80 LIGPTGVGKTTTLA 93 (270)
T ss_pred EECCCCCcHHHHHH
Confidence 55668999999977
Done!