Query 045618
Match_columns 349
No_of_seqs 205 out of 2133
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 06:09:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.3E-40 4.5E-45 327.3 15.6 275 12-305 153-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2E-36 6.7E-41 323.2 20.7 276 12-304 148-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.4E-35 4.7E-40 299.4 13.2 267 12-323 151-457 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.3E-33 2.2E-37 275.3 19.7 201 88-300 226-448 (591)
5 2qen_A Walker-type ATPase; unk 99.5 1.8E-12 6.1E-17 119.3 22.3 190 96-298 128-349 (350)
6 2fna_A Conserved hypothetical 99.4 6.8E-12 2.3E-16 115.6 18.9 190 96-297 137-356 (357)
7 1w5s_A Origin recognition comp 99.3 3.1E-11 1.1E-15 113.7 17.2 267 17-293 58-387 (412)
8 2qby_B CDC6 homolog 3, cell di 99.1 1.8E-08 6.3E-13 93.7 21.0 250 16-282 50-339 (384)
9 2qby_A CDC6 homolog 1, cell di 98.9 5.9E-08 2E-12 90.0 18.0 252 16-282 50-348 (386)
10 2v1u_A Cell division control p 98.9 1.6E-07 5.4E-12 87.2 19.4 253 16-282 49-351 (387)
11 1fnn_A CDC6P, cell division co 98.8 1.5E-07 5.2E-12 87.5 18.5 252 16-283 49-352 (389)
12 1njg_A DNA polymerase III subu 98.6 1.5E-07 5.1E-12 81.1 10.1 104 94-199 124-231 (250)
13 2chg_A Replication factor C sm 98.4 5.1E-06 1.7E-10 70.3 13.9 100 95-196 101-204 (226)
14 1sxj_B Activator 1 37 kDa subu 98.3 1.1E-05 3.7E-10 72.9 13.0 101 94-196 105-210 (323)
15 1hqc_A RUVB; extended AAA-ATPa 98.2 0.00025 8.6E-09 63.9 20.5 184 96-294 90-309 (324)
16 1iqp_A RFCS; clamp loader, ext 97.9 9E-05 3.1E-09 66.8 11.1 100 95-196 109-212 (327)
17 1jr3_A DNA polymerase III subu 97.7 0.00015 5.2E-09 66.7 9.9 100 95-196 118-221 (373)
18 2chq_A Replication factor C sm 97.6 0.001 3.5E-08 59.5 13.7 98 95-194 101-202 (319)
19 3pfi_A Holliday junction ATP-d 97.5 0.0084 2.9E-07 54.2 18.7 185 95-293 105-324 (338)
20 2z4s_A Chromosomal replication 97.3 0.00062 2.1E-08 64.4 8.7 104 89-194 187-304 (440)
21 1d2n_A N-ethylmaleimide-sensit 97.2 0.0034 1.2E-07 55.1 11.9 119 92-217 120-264 (272)
22 3bos_A Putative DNA replicatio 97.1 0.00063 2.2E-08 58.1 6.4 98 96-195 104-216 (242)
23 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.016 5.6E-07 50.0 14.5 96 94-190 96-215 (262)
24 3h4m_A Proteasome-activating n 97.0 0.0068 2.3E-07 53.3 11.7 98 94-194 108-229 (285)
25 1sxj_A Activator 1 95 kDa subu 97.0 0.013 4.3E-07 56.6 14.3 100 94-197 146-254 (516)
26 1sxj_E Activator 1 40 kDa subu 96.8 0.0084 2.9E-07 54.5 11.1 101 94-195 132-236 (354)
27 1a5t_A Delta prime, HOLB; zinc 96.8 0.015 5.2E-07 52.6 12.6 94 95-195 107-204 (334)
28 3te6_A Regulatory protein SIR3 96.6 0.038 1.3E-06 49.6 13.6 143 16-164 50-211 (318)
29 2zan_A Vacuolar protein sortin 96.6 0.045 1.5E-06 51.6 14.9 102 92-195 223-344 (444)
30 3eie_A Vacuolar protein sortin 96.6 0.017 5.9E-07 51.9 11.5 99 95-195 109-227 (322)
31 3pvs_A Replication-associated 96.6 0.017 5.9E-07 54.5 11.9 99 94-194 104-213 (447)
32 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.027 9.3E-07 50.7 12.7 101 94-196 103-223 (322)
33 1sxj_D Activator 1 41 kDa subu 96.6 0.021 7E-07 51.7 11.9 98 95-194 132-233 (353)
34 3syl_A Protein CBBX; photosynt 96.5 0.013 4.6E-07 52.0 10.1 70 96-165 130-218 (309)
35 3u61_B DNA polymerase accessor 96.5 0.022 7.5E-07 51.1 11.5 95 95-190 104-210 (324)
36 1jbk_A CLPB protein; beta barr 96.5 0.0022 7.6E-08 52.3 4.3 65 94-160 113-194 (195)
37 1l8q_A Chromosomal replication 96.5 0.042 1.4E-06 49.3 13.2 91 96-190 98-202 (324)
38 2qp9_X Vacuolar protein sortin 96.4 0.045 1.5E-06 50.0 12.9 101 94-196 141-261 (355)
39 1in4_A RUVB, holliday junction 96.2 0.62 2.1E-05 41.8 19.8 136 145-294 174-322 (334)
40 3d8b_A Fidgetin-like protein 1 96.2 0.077 2.6E-06 48.4 13.7 100 95-196 175-295 (357)
41 3uk6_A RUVB-like 2; hexameric 96.2 0.036 1.2E-06 50.5 11.4 94 97-193 190-300 (368)
42 3vfd_A Spastin; ATPase, microt 96.1 0.063 2.2E-06 49.6 12.5 99 95-195 206-325 (389)
43 3cf0_A Transitional endoplasmi 96.1 0.089 3.1E-06 46.7 13.0 101 87-191 99-223 (301)
44 3b9p_A CG5977-PA, isoform A; A 95.8 0.17 5.8E-06 44.5 13.3 100 94-195 111-232 (297)
45 1sxj_C Activator 1 40 kDa subu 95.5 0.11 3.8E-06 46.8 11.4 95 95-191 109-207 (340)
46 2gno_A DNA polymerase III, gam 94.6 0.12 4E-06 46.1 8.6 69 95-164 81-152 (305)
47 3ec2_A DNA replication protein 94.5 0.071 2.4E-06 43.2 6.3 18 16-33 43-60 (180)
48 2r62_A Cell division protease 94.2 0.046 1.6E-06 47.4 4.8 71 94-164 101-196 (268)
49 2w58_A DNAI, primosome compone 93.7 0.1 3.5E-06 43.0 6.0 18 16-33 59-76 (202)
50 4b4t_J 26S protease regulatory 93.4 0.23 7.9E-06 45.9 8.1 92 94-189 239-354 (405)
51 2p65_A Hypothetical protein PF 92.9 0.1 3.4E-06 42.0 4.6 18 16-33 48-65 (187)
52 1lv7_A FTSH; alpha/beta domain 92.9 0.45 1.5E-05 40.8 8.9 72 93-164 101-195 (257)
53 4fcw_A Chaperone protein CLPB; 92.7 0.3 1E-05 43.1 7.7 18 16-33 52-69 (311)
54 3hu3_A Transitional endoplasmi 92.7 0.17 5.9E-06 48.2 6.4 97 89-188 290-406 (489)
55 1ofh_A ATP-dependent HSL prote 92.4 1 3.4E-05 39.4 10.8 20 144-163 195-214 (310)
56 2ce7_A Cell division protein F 92.4 1.1 3.8E-05 42.4 11.4 98 89-189 101-221 (476)
57 1r6b_X CLPA protein; AAA+, N-t 92.3 0.31 1.1E-05 49.1 8.2 69 95-164 277-362 (758)
58 3t15_A Ribulose bisphosphate c 92.0 0.44 1.5E-05 42.0 7.9 41 123-165 154-199 (293)
59 3pxg_A Negative regulator of g 92.0 0.71 2.4E-05 43.6 9.7 75 86-164 257-338 (468)
60 3m6a_A ATP-dependent protease 91.3 0.44 1.5E-05 46.0 7.6 69 96-164 175-266 (543)
61 4b4t_H 26S protease regulatory 91.3 0.94 3.2E-05 42.6 9.5 92 94-189 300-415 (467)
62 4b4t_L 26S protease subunit RP 91.0 3.7 0.00013 38.3 13.2 92 94-189 272-387 (437)
63 1qvr_A CLPB protein; coiled co 90.2 0.42 1.4E-05 48.9 6.6 68 95-164 262-345 (854)
64 2kjq_A DNAA-related protein; s 90.1 0.14 4.7E-06 40.4 2.3 18 16-33 41-58 (149)
65 4b4t_M 26S protease regulatory 89.8 2.3 8E-05 39.6 10.7 91 95-189 273-387 (434)
66 4b4t_K 26S protease regulatory 89.4 0.84 2.9E-05 42.6 7.4 92 94-189 263-379 (428)
67 3n70_A Transport activator; si 89.3 0.71 2.4E-05 35.8 6.0 37 98-134 78-116 (145)
68 2bjv_A PSP operon transcriptio 89.3 0.84 2.9E-05 39.2 7.0 18 16-33 34-51 (265)
69 1ojl_A Transcriptional regulat 89.2 1.2 3.9E-05 39.5 8.0 18 16-33 30-47 (304)
70 4b4t_I 26S protease regulatory 89.2 1.2 4.3E-05 41.3 8.3 92 94-189 273-388 (437)
71 3pxi_A Negative regulator of g 89.1 1.1 3.7E-05 45.1 8.6 67 96-164 579-675 (758)
72 3pxi_A Negative regulator of g 88.7 1.6 5.4E-05 43.9 9.5 76 85-164 256-338 (758)
73 2dhr_A FTSH; AAA+ protein, hex 86.8 4.7 0.00016 38.3 11.0 90 97-189 124-236 (499)
74 2x8a_A Nuclear valosin-contain 86.6 3.8 0.00013 35.5 9.5 70 95-164 102-191 (274)
75 3co5_A Putative two-component 86.0 0.66 2.2E-05 35.9 3.8 17 17-33 33-49 (143)
76 1iy2_A ATP-dependent metallopr 84.5 4.2 0.00014 35.1 8.8 70 95-164 131-223 (278)
77 2cvh_A DNA repair and recombin 84.5 1.5 5.3E-05 36.1 5.7 16 16-31 25-40 (220)
78 1ixz_A ATP-dependent metallopr 83.4 4.7 0.00016 34.1 8.6 70 95-164 107-199 (254)
79 3cf2_A TER ATPase, transitiona 82.3 3.9 0.00013 41.3 8.5 97 89-189 290-407 (806)
80 1jr3_D DNA polymerase III, del 78.5 11 0.00039 33.4 9.6 101 93-195 73-184 (343)
81 3i71_A Ethanolamine utilizatio 78.2 6 0.0002 25.2 5.2 55 238-293 6-61 (68)
82 3nbx_X ATPase RAVA; AAA+ ATPas 75.1 2.8 9.4E-05 39.9 4.7 18 16-33 46-63 (500)
83 1r6b_X CLPA protein; AAA+, N-t 74.3 8.5 0.00029 38.5 8.3 17 16-32 493-509 (758)
84 3cf2_A TER ATPase, transitiona 74.2 2.5 8.4E-05 42.7 4.2 93 92-188 566-682 (806)
85 2vhj_A Ntpase P4, P4; non- hyd 73.0 1.8 6.1E-05 38.7 2.6 16 16-31 128-143 (331)
86 1qvr_A CLPB protein; coiled co 72.9 4.8 0.00016 41.0 6.1 17 16-32 593-609 (854)
87 2ph1_A Nucleotide-binding prot 67.7 2.4 8.3E-05 36.3 2.2 10 20-29 28-37 (262)
88 1ex7_A Guanylate kinase; subst 65.8 2.3 8E-05 34.6 1.6 17 16-32 6-22 (186)
89 1g5t_A COB(I)alamin adenosyltr 65.6 5.6 0.00019 32.7 3.9 48 88-135 111-164 (196)
90 2r8r_A Sensor protein; KDPD, P 64.8 2.1 7E-05 36.2 1.1 14 16-29 11-24 (228)
91 3jvv_A Twitching mobility prot 61.8 9.8 0.00033 34.3 5.2 52 83-137 183-234 (356)
92 3cwq_A Para family chromosome 59.2 2.9 9.9E-05 34.5 1.1 12 18-29 8-19 (209)
93 1kgd_A CASK, peripheral plasma 58.8 3.1 0.00011 33.3 1.2 18 15-32 9-26 (180)
94 1yrb_A ATP(GTP)binding protein 58.7 2.9 0.0001 35.5 1.1 14 16-29 19-32 (262)
95 4dzz_A Plasmid partitioning pr 58.1 3.1 0.00011 33.8 1.1 12 18-29 9-20 (206)
96 3fwy_A Light-independent proto 57.9 2.9 0.0001 37.1 0.9 12 18-29 55-66 (314)
97 1ypw_A Transitional endoplasmi 57.8 39 0.0013 34.0 9.3 70 94-164 295-385 (806)
98 3kb2_A SPBC2 prophage-derived 57.2 4.9 0.00017 31.4 2.1 18 16-33 6-23 (173)
99 3lw7_A Adenylate kinase relate 56.9 4.9 0.00017 31.3 2.1 16 16-31 6-21 (179)
100 1gvn_B Zeta; postsegregational 56.3 4.7 0.00016 35.2 2.0 27 16-42 38-66 (287)
101 3kjh_A CO dehydrogenase/acetyl 56.1 3.5 0.00012 34.6 1.1 13 17-29 6-18 (254)
102 1cp2_A CP2, nitrogenase iron p 54.3 3.9 0.00013 34.9 1.1 12 18-29 8-19 (269)
103 1qhx_A CPT, protein (chloramph 54.0 4.2 0.00014 32.1 1.2 18 16-33 8-25 (178)
104 3k9g_A PF-32 protein; ssgcid, 52.2 4.3 0.00015 34.6 1.0 10 20-29 37-46 (267)
105 3ea0_A ATPase, para family; al 51.8 4.5 0.00015 33.8 1.1 11 19-29 13-23 (245)
106 2c9o_A RUVB-like 1; hexameric 51.7 54 0.0018 30.4 8.7 92 98-192 297-406 (456)
107 1lvg_A Guanylate kinase, GMP k 50.9 5 0.00017 32.7 1.2 19 14-32 7-25 (198)
108 3trf_A Shikimate kinase, SK; a 50.8 7 0.00024 31.0 2.0 18 16-33 10-27 (185)
109 2afh_E Nitrogenase iron protei 50.6 4.8 0.00016 34.9 1.1 12 18-29 9-20 (289)
110 3t61_A Gluconokinase; PSI-biol 50.5 7.5 0.00026 31.5 2.2 18 16-33 23-40 (202)
111 2heo_A Z-DNA binding protein 1 50.4 35 0.0012 22.2 5.2 53 237-289 12-65 (67)
112 3q9l_A Septum site-determining 49.8 5 0.00017 33.9 1.1 12 18-29 10-21 (260)
113 3end_A Light-independent proto 49.4 5.1 0.00017 35.1 1.1 12 18-29 48-59 (307)
114 3tau_A Guanylate kinase, GMP k 49.1 5.4 0.00019 32.7 1.1 18 15-32 12-29 (208)
115 2oze_A ORF delta'; para, walke 48.6 5.4 0.00018 34.7 1.1 12 18-29 44-55 (298)
116 3ney_A 55 kDa erythrocyte memb 48.5 6.7 0.00023 32.2 1.6 17 16-32 24-40 (197)
117 2vn2_A DNAD, chromosome replic 48.5 53 0.0018 24.4 6.6 84 221-304 16-114 (128)
118 3a00_A Guanylate kinase, GMP k 48.5 5.3 0.00018 32.0 1.0 18 15-32 5-22 (186)
119 3vaa_A Shikimate kinase, SK; s 48.0 8.2 0.00028 31.2 2.1 18 16-33 30-47 (199)
120 1wcv_1 SOJ, segregation protei 47.9 5.7 0.00019 33.8 1.1 12 18-29 14-25 (257)
121 2xj4_A MIPZ; replication, cell 47.5 5.9 0.0002 34.3 1.2 12 18-29 12-23 (286)
122 3tr0_A Guanylate kinase, GMP k 47.2 5.7 0.0002 32.1 1.0 20 14-33 10-29 (205)
123 1g3q_A MIND ATPase, cell divis 47.1 5.9 0.0002 32.9 1.1 12 18-29 10-21 (237)
124 1kag_A SKI, shikimate kinase I 46.8 9.2 0.00031 29.9 2.1 19 15-33 8-26 (173)
125 2qor_A Guanylate kinase; phosp 46.6 6.3 0.00021 32.1 1.1 17 16-32 17-33 (204)
126 1ly1_A Polynucleotide kinase; 46.5 9.6 0.00033 29.9 2.2 18 16-33 7-24 (181)
127 2px0_A Flagellar biosynthesis 46.1 5.5 0.00019 35.0 0.7 14 16-29 110-123 (296)
128 1knq_A Gluconate kinase; ALFA/ 45.3 11 0.00037 29.6 2.3 19 15-33 12-30 (175)
129 3c8u_A Fructokinase; YP_612366 45.1 6.1 0.00021 32.4 0.8 18 14-31 25-42 (208)
130 1s96_A Guanylate kinase, GMP k 44.9 6.7 0.00023 32.7 1.1 42 88-135 100-141 (219)
131 4eun_A Thermoresistant glucoki 44.9 11 0.00037 30.5 2.4 25 16-40 34-58 (200)
132 1byi_A Dethiobiotin synthase; 44.9 6.6 0.00023 32.3 1.0 12 18-29 9-20 (224)
133 2pt7_A CAG-ALFA; ATPase, prote 44.9 44 0.0015 29.5 6.6 48 84-134 228-275 (330)
134 3pg5_A Uncharacterized protein 44.8 6.3 0.00022 35.6 0.9 12 18-29 9-20 (361)
135 3iij_A Coilin-interacting nucl 44.8 11 0.00037 29.8 2.3 17 16-32 16-32 (180)
136 1ye8_A Protein THEP1, hypothet 44.7 6.7 0.00023 31.4 1.0 62 93-156 96-168 (178)
137 4gp7_A Metallophosphoesterase; 44.0 7.4 0.00025 30.8 1.1 18 16-33 14-31 (171)
138 1z6g_A Guanylate kinase; struc 43.7 6.9 0.00024 32.4 0.9 19 15-33 27-45 (218)
139 3zq6_A Putative arsenical pump 43.7 6.7 0.00023 34.8 0.9 12 18-29 21-32 (324)
140 1odf_A YGR205W, hypothetical 3 43.6 7 0.00024 34.2 1.0 17 14-30 34-50 (290)
141 1kht_A Adenylate kinase; phosp 43.5 11 0.00039 29.7 2.2 17 16-32 8-24 (192)
142 1hyq_A MIND, cell division inh 43.4 7.1 0.00024 33.1 1.0 12 18-29 10-21 (263)
143 2zej_A Dardarin, leucine-rich 43.1 6.8 0.00023 31.1 0.8 18 14-31 5-22 (184)
144 3ug7_A Arsenical pump-driving 43.0 7.3 0.00025 35.0 1.1 12 18-29 33-44 (349)
145 3hr8_A Protein RECA; alpha and 42.5 19 0.00065 32.5 3.7 21 268-289 275-295 (356)
146 2qe7_A ATP synthase subunit al 42.2 21 0.00071 33.8 4.0 13 94-106 252-264 (502)
147 1rj9_A FTSY, signal recognitio 42.0 7.9 0.00027 34.1 1.1 14 16-29 107-120 (304)
148 1zp6_A Hypothetical protein AT 41.7 7.3 0.00025 31.1 0.8 19 15-33 13-31 (191)
149 2woo_A ATPase GET3; tail-ancho 41.6 8.1 0.00028 34.4 1.1 13 17-29 25-37 (329)
150 3ez2_A Plasmid partition prote 41.2 8.1 0.00028 35.3 1.1 10 20-29 118-127 (398)
151 3fkq_A NTRC-like two-domain pr 41.2 8.1 0.00028 35.0 1.1 10 20-29 153-162 (373)
152 4akg_A Glutathione S-transfera 40.8 56 0.0019 37.7 7.8 64 16-106 1614-1677(2695)
153 3aez_A Pantothenate kinase; tr 40.8 8.1 0.00028 34.2 1.0 18 14-31 93-110 (312)
154 1znw_A Guanylate kinase, GMP k 40.7 8.2 0.00028 31.5 0.9 18 16-33 25-42 (207)
155 2rhm_A Putative kinase; P-loop 40.3 12 0.0004 29.8 1.9 18 16-33 10-27 (193)
156 1rz3_A Hypothetical protein rb 40.2 7.5 0.00026 31.6 0.6 18 14-31 25-42 (201)
157 2f9l_A RAB11B, member RAS onco 40.0 8 0.00027 31.1 0.7 20 13-32 7-26 (199)
158 1cke_A CK, MSSA, protein (cyti 39.8 13 0.00044 30.5 2.0 20 14-33 8-27 (227)
159 2hf9_A Probable hydrogenase ni 39.8 8 0.00027 31.8 0.7 16 15-30 42-57 (226)
160 2v79_A DNA replication protein 39.7 37 0.0013 25.7 4.5 85 220-304 15-114 (135)
161 2jaq_A Deoxyguanosine kinase; 39.7 15 0.00051 29.4 2.4 18 16-33 5-22 (205)
162 3iqw_A Tail-anchored protein t 39.4 9.1 0.00031 34.2 1.1 12 18-29 23-34 (334)
163 2j41_A Guanylate kinase; GMP, 39.1 9.4 0.00032 30.8 1.1 18 15-32 10-27 (207)
164 1oix_A RAS-related protein RAB 39.0 7.4 0.00025 31.2 0.4 20 13-32 31-50 (191)
165 2ce2_X GTPase HRAS; signaling 39.0 8.4 0.00029 29.3 0.7 18 15-32 7-24 (166)
166 3asz_A Uridine kinase; cytidin 39.0 7.9 0.00027 31.5 0.6 20 14-33 9-28 (211)
167 1xjc_A MOBB protein homolog; s 38.9 9.4 0.00032 30.4 1.0 18 14-31 7-24 (169)
168 2wji_A Ferrous iron transport 38.8 8.5 0.00029 29.8 0.7 18 14-31 6-23 (165)
169 1via_A Shikimate kinase; struc 38.6 16 0.00054 28.6 2.3 18 16-33 9-26 (175)
170 2bdt_A BH3686; alpha-beta prot 38.5 9.9 0.00034 30.3 1.1 19 15-33 6-24 (189)
171 2f1r_A Molybdopterin-guanine d 38.3 5.9 0.0002 31.6 -0.3 18 14-31 5-22 (171)
172 2dyk_A GTP-binding protein; GT 38.2 10 0.00036 28.8 1.2 17 16-32 6-22 (161)
173 3tqc_A Pantothenate kinase; bi 37.9 9.6 0.00033 33.9 1.0 17 14-30 95-111 (321)
174 4aby_A DNA repair protein RECN 37.9 37 0.0013 30.8 5.1 52 88-139 305-361 (415)
175 3sop_A Neuronal-specific septi 37.5 10 0.00035 32.7 1.1 19 15-33 6-24 (270)
176 1fx0_A ATP synthase alpha chai 37.5 21 0.0007 33.8 3.2 14 94-107 253-266 (507)
177 1e6c_A Shikimate kinase; phosp 37.4 17 0.00059 28.1 2.4 18 16-33 7-24 (173)
178 2ze6_A Isopentenyl transferase 37.3 15 0.0005 31.2 2.0 17 16-32 6-22 (253)
179 1zu4_A FTSY; GTPase, signal re 37.3 10 0.00036 33.6 1.1 14 16-29 110-123 (320)
180 2qnr_A Septin-2, protein NEDD5 37.0 6.3 0.00021 34.6 -0.4 24 10-33 17-40 (301)
181 2iyv_A Shikimate kinase, SK; t 37.0 15 0.00053 28.9 2.0 18 16-33 7-24 (184)
182 1ls1_A Signal recognition part 36.8 11 0.00039 32.9 1.3 14 16-29 103-116 (295)
183 3uie_A Adenylyl-sulfate kinase 36.7 11 0.00037 30.5 1.1 16 16-31 30-45 (200)
184 3con_A GTPase NRAS; structural 36.7 11 0.00038 29.8 1.1 17 16-32 26-42 (190)
185 3io3_A DEHA2D07832P; chaperone 36.4 11 0.00037 34.0 1.1 12 18-29 25-36 (348)
186 3sr0_A Adenylate kinase; phosp 36.3 75 0.0026 25.8 6.2 26 88-114 67-93 (206)
187 3d0s_A Transcriptional regulat 36.3 63 0.0022 26.1 5.9 45 247-292 174-219 (227)
188 3b9q_A Chloroplast SRP recepto 36.3 11 0.00038 33.1 1.1 14 16-29 105-118 (302)
189 2jeo_A Uridine-cytidine kinase 36.2 11 0.00036 31.8 0.9 17 15-31 29-45 (245)
190 2woj_A ATPase GET3; tail-ancho 36.2 11 0.00037 34.0 1.1 11 19-29 26-36 (354)
191 1nks_A Adenylate kinase; therm 35.9 11 0.00037 29.9 0.9 17 16-32 6-22 (194)
192 2wjg_A FEOB, ferrous iron tran 35.3 12 0.00041 29.4 1.1 20 14-33 10-29 (188)
193 2i3b_A HCR-ntpase, human cance 35.3 12 0.00043 30.2 1.2 16 15-30 5-20 (189)
194 2xxa_A Signal recognition part 35.2 12 0.0004 34.9 1.1 13 17-29 106-118 (433)
195 1z2a_A RAS-related protein RAB 35.1 12 0.00042 28.5 1.1 18 15-32 9-26 (168)
196 2qt1_A Nicotinamide riboside k 35.0 7.3 0.00025 31.7 -0.3 20 14-33 24-43 (207)
197 1np6_A Molybdopterin-guanine d 35.0 15 0.0005 29.4 1.6 19 14-32 9-27 (174)
198 3oaa_A ATP synthase subunit al 35.0 38 0.0013 32.0 4.5 14 94-107 252-265 (513)
199 3l0o_A Transcription terminati 34.7 60 0.0021 29.8 5.7 20 87-108 255-274 (427)
200 3fb4_A Adenylate kinase; psych 34.6 17 0.0006 29.5 2.0 16 16-31 5-20 (216)
201 3ez9_A Para; DNA binding, wing 34.5 7.8 0.00027 35.5 -0.2 10 20-29 121-130 (403)
202 3dl0_A Adenylate kinase; phosp 34.1 17 0.00058 29.6 1.9 17 16-32 5-21 (216)
203 1tev_A UMP-CMP kinase; ploop, 34.0 21 0.0007 28.2 2.4 17 16-32 8-24 (196)
204 2yvu_A Probable adenylyl-sulfa 33.8 14 0.00049 29.3 1.3 16 16-31 18-33 (186)
205 3cbq_A GTP-binding protein REM 33.8 13 0.00045 29.8 1.1 18 14-31 26-43 (195)
206 3cz5_A Two-component response 33.6 97 0.0033 22.8 6.2 79 82-164 37-123 (153)
207 2ged_A SR-beta, signal recogni 33.5 14 0.00046 29.3 1.2 17 16-32 53-69 (193)
208 3nwj_A ATSK2; P loop, shikimat 33.5 19 0.00065 30.6 2.1 22 16-37 53-74 (250)
209 3lnc_A Guanylate kinase, GMP k 33.5 9.7 0.00033 31.6 0.3 18 15-32 31-48 (231)
210 1n0w_A DNA repair protein RAD5 33.5 13 0.00046 30.7 1.2 16 16-31 29-44 (243)
211 2qmh_A HPR kinase/phosphorylas 33.4 13 0.00046 30.6 1.1 17 16-32 39-55 (205)
212 2zcw_A TTHA1359, transcription 33.3 54 0.0019 25.9 4.9 42 250-292 146-188 (202)
213 3nqo_A MARR-family transcripti 33.3 1E+02 0.0036 24.3 6.6 55 229-283 35-91 (189)
214 3cm0_A Adenylate kinase; ATP-b 33.3 22 0.00074 28.0 2.4 17 16-32 9-25 (186)
215 2ehv_A Hypothetical protein PH 32.9 14 0.00047 30.7 1.2 16 16-31 35-50 (251)
216 3zvl_A Bifunctional polynucleo 32.9 21 0.00073 32.8 2.5 28 16-43 263-290 (416)
217 3vkg_A Dynein heavy chain, cyt 32.8 58 0.002 38.2 6.3 63 16-105 1651-1713(3245)
218 3mq0_A Transcriptional repress 32.7 1.2E+02 0.0042 25.7 7.3 57 248-304 43-100 (275)
219 1j8m_F SRP54, signal recogniti 32.7 12 0.00042 32.7 0.8 14 16-29 103-116 (297)
220 3kl4_A SRP54, signal recogniti 32.5 15 0.00052 34.1 1.4 14 16-29 102-115 (433)
221 2w0m_A SSO2452; RECA, SSPF, un 32.5 14 0.00048 30.2 1.1 16 16-31 28-43 (235)
222 2nzj_A GTP-binding protein REM 32.5 15 0.0005 28.4 1.2 17 15-31 8-24 (175)
223 1vma_A Cell division protein F 32.3 14 0.00049 32.5 1.2 14 16-29 109-122 (306)
224 2if2_A Dephospho-COA kinase; a 32.3 12 0.00041 30.2 0.6 19 15-33 5-23 (204)
225 3exa_A TRNA delta(2)-isopenten 32.3 20 0.00067 31.8 2.0 18 16-33 8-25 (322)
226 3la7_A Global nitrogen regulat 32.1 68 0.0023 26.4 5.5 44 248-292 191-235 (243)
227 4a74_A DNA repair and recombin 32.1 12 0.00042 30.6 0.7 17 16-32 30-46 (231)
228 1qf9_A UMP/CMP kinase, protein 32.0 19 0.00064 28.4 1.8 18 16-33 11-28 (194)
229 3crm_A TRNA delta(2)-isopenten 32.0 19 0.00066 31.9 1.9 19 15-33 9-27 (323)
230 3e97_A Transcriptional regulat 31.9 1E+02 0.0035 24.8 6.5 45 247-292 172-217 (231)
231 2v3c_C SRP54, signal recogniti 31.8 13 0.00045 34.5 0.8 14 16-29 104-117 (432)
232 2bwj_A Adenylate kinase 5; pho 31.7 21 0.00071 28.4 2.0 18 16-33 17-34 (199)
233 1u8z_A RAS-related protein RAL 31.7 15 0.00051 27.9 1.1 17 16-32 9-25 (168)
234 3e70_C DPA, signal recognition 31.4 15 0.00051 32.7 1.2 14 16-29 134-147 (328)
235 2pt5_A Shikimate kinase, SK; a 31.4 24 0.00081 27.2 2.3 18 16-33 5-22 (168)
236 2qgz_A Helicase loader, putati 31.3 17 0.00059 31.8 1.5 17 16-32 157-173 (308)
237 2c95_A Adenylate kinase 1; tra 31.3 21 0.00072 28.3 2.0 18 16-33 14-31 (196)
238 2oz6_A Virulence factor regula 31.2 63 0.0022 25.5 5.0 40 251-291 165-205 (207)
239 1ihu_A Arsenical pump-driving 31.2 15 0.0005 35.6 1.1 13 17-29 14-26 (589)
240 2wsm_A Hydrogenase expression/ 31.1 13 0.00046 30.2 0.8 15 16-30 35-49 (221)
241 1sq5_A Pantothenate kinase; P- 31.0 13 0.00044 32.6 0.6 19 14-32 83-101 (308)
242 3llu_A RAS-related GTP-binding 30.9 15 0.00052 29.3 1.0 16 16-31 25-40 (196)
243 1ukz_A Uridylate kinase; trans 30.8 23 0.0008 28.4 2.2 18 16-33 20-37 (203)
244 3q85_A GTP-binding protein REM 30.7 16 0.00054 28.0 1.1 17 15-31 6-22 (169)
245 2erx_A GTP-binding protein DI- 30.6 16 0.00056 27.9 1.2 17 16-32 8-24 (172)
246 3igf_A ALL4481 protein; two-do 30.5 12 0.00042 34.0 0.4 13 17-29 8-20 (374)
247 3t1o_A Gliding protein MGLA; G 30.5 19 0.00064 28.3 1.5 17 15-31 18-34 (198)
248 2og2_A Putative signal recogni 30.4 16 0.00054 33.0 1.1 14 16-29 162-175 (359)
249 1mkm_A ICLR transcriptional re 30.4 1.6E+02 0.0055 24.4 7.6 56 248-303 21-77 (249)
250 3ihw_A Centg3; RAS, centaurin, 30.3 16 0.00056 28.8 1.1 15 16-30 25-39 (184)
251 2cdn_A Adenylate kinase; phosp 30.2 24 0.0008 28.3 2.1 17 16-32 25-41 (201)
252 1nrj_B SR-beta, signal recogni 30.1 16 0.00056 29.6 1.1 18 15-32 16-33 (218)
253 1y63_A LMAJ004144AAA protein; 30.1 24 0.00082 28.0 2.1 18 16-33 15-32 (184)
254 3tif_A Uncharacterized ABC tra 30.0 15 0.00053 30.7 0.9 50 88-138 155-210 (235)
255 2r9v_A ATP synthase subunit al 30.0 43 0.0015 31.7 4.0 14 94-107 265-278 (515)
256 1r8s_A ADP-ribosylation factor 29.9 17 0.00058 27.7 1.1 17 16-32 5-21 (164)
257 2iwr_A Centaurin gamma 1; ANK 29.8 15 0.0005 28.6 0.7 18 15-32 11-28 (178)
258 3a4m_A L-seryl-tRNA(SEC) kinas 29.8 17 0.00057 30.9 1.2 17 16-32 9-25 (260)
259 2qag_C Septin-7; cell cycle, c 29.7 12 0.0004 34.7 0.1 21 13-33 33-53 (418)
260 1z0j_A RAB-22, RAS-related pro 29.5 18 0.0006 27.7 1.2 18 15-32 10-27 (170)
261 1nlf_A Regulatory protein REPA 29.5 14 0.00049 31.6 0.7 15 16-30 35-49 (279)
262 3q72_A GTP-binding protein RAD 29.4 15 0.00051 28.0 0.7 16 16-31 7-22 (166)
263 1zak_A Adenylate kinase; ATP:A 29.4 22 0.00077 29.0 1.9 18 16-33 10-27 (222)
264 1c1y_A RAS-related protein RAP 29.2 18 0.0006 27.6 1.1 17 16-32 8-24 (167)
265 1ky3_A GTP-binding protein YPT 29.2 18 0.00061 28.0 1.2 18 14-31 11-28 (182)
266 3c5c_A RAS-like protein 12; GD 29.2 18 0.00061 28.6 1.2 17 15-31 25-41 (187)
267 1z08_A RAS-related protein RAB 29.1 18 0.00061 27.7 1.1 18 15-32 10-27 (170)
268 1htw_A HI0065; nucleotide-bind 29.1 18 0.00061 28.3 1.1 18 16-33 38-55 (158)
269 1bja_A Transcription regulator 29.1 1.5E+02 0.0051 20.9 5.9 67 222-290 3-71 (95)
270 1a7j_A Phosphoribulokinase; tr 29.0 12 0.0004 32.7 -0.0 17 14-30 8-24 (290)
271 3k69_A Putative transcription 29.0 1.4E+02 0.0049 23.1 6.5 47 237-283 14-62 (162)
272 3d3q_A TRNA delta(2)-isopenten 28.9 17 0.00058 32.6 1.1 19 14-32 10-28 (340)
273 3tqf_A HPR(Ser) kinase; transf 28.9 16 0.00054 29.5 0.7 27 16-43 21-47 (181)
274 1fzq_A ADP-ribosylation factor 28.9 16 0.00053 28.8 0.7 18 14-31 19-36 (181)
275 1ek0_A Protein (GTP-binding pr 28.8 18 0.00062 27.5 1.1 17 16-32 8-24 (170)
276 1m7b_A RND3/RHOE small GTP-bin 28.7 16 0.00053 28.8 0.7 18 15-32 11-28 (184)
277 3foz_A TRNA delta(2)-isopenten 28.7 24 0.00081 31.2 1.9 19 15-33 14-32 (316)
278 2o0y_A Transcriptional regulat 28.6 2E+02 0.0069 24.0 7.9 67 238-304 23-93 (260)
279 2lkc_A Translation initiation 28.6 19 0.00067 27.7 1.3 18 15-32 12-29 (178)
280 4dkx_A RAS-related protein RAB 28.6 18 0.00061 29.9 1.1 16 15-30 17-32 (216)
281 2cjw_A GTP-binding protein GEM 28.4 18 0.00063 28.8 1.1 17 14-30 9-25 (192)
282 1zd8_A GTP:AMP phosphotransfer 28.4 24 0.00081 29.0 1.8 17 16-32 12-28 (227)
283 1um8_A ATP-dependent CLP prote 28.3 21 0.00071 32.1 1.6 18 16-33 77-94 (376)
284 2pcj_A ABC transporter, lipopr 28.3 15 0.00052 30.5 0.6 48 88-137 150-203 (224)
285 4ev0_A Transcription regulator 28.3 79 0.0027 25.1 5.1 42 250-292 163-205 (216)
286 2z0h_A DTMP kinase, thymidylat 28.3 20 0.00067 28.5 1.3 16 16-31 5-20 (197)
287 1jjv_A Dephospho-COA kinase; P 28.3 17 0.00059 29.3 0.9 18 14-31 5-22 (206)
288 3dm5_A SRP54, signal recogniti 28.3 18 0.00062 33.7 1.2 14 16-29 105-118 (443)
289 2cbz_A Multidrug resistance-as 28.3 17 0.00059 30.5 0.9 51 88-138 137-193 (237)
290 2plr_A DTMP kinase, probable t 28.2 20 0.00068 28.8 1.3 16 16-31 9-24 (213)
291 2bbw_A Adenylate kinase 4, AK4 28.2 20 0.00068 30.0 1.3 18 15-32 31-48 (246)
292 1wms_A RAB-9, RAB9, RAS-relate 27.9 19 0.00067 27.7 1.2 19 14-32 10-28 (177)
293 1kao_A RAP2A; GTP-binding prot 27.8 20 0.00067 27.2 1.2 16 16-31 8-23 (167)
294 2yhs_A FTSY, cell division pro 27.7 18 0.00061 34.3 1.0 15 16-30 298-312 (503)
295 1upt_A ARL1, ADP-ribosylation 27.7 19 0.00066 27.5 1.1 18 15-32 11-28 (171)
296 2r44_A Uncharacterized protein 27.6 19 0.00066 31.6 1.2 21 145-165 179-199 (331)
297 1zuh_A Shikimate kinase; alpha 27.6 31 0.001 26.6 2.3 18 16-33 12-29 (168)
298 1q57_A DNA primase/helicase; d 27.4 1.4E+02 0.0048 27.8 7.3 12 20-31 251-262 (503)
299 2onk_A Molybdate/tungstate ABC 27.4 19 0.00064 30.4 1.0 49 88-137 136-190 (240)
300 1b0u_A Histidine permease; ABC 27.3 19 0.00063 30.8 1.0 49 88-138 163-217 (262)
301 3a8t_A Adenylate isopentenyltr 27.3 25 0.00086 31.4 1.9 19 15-33 44-62 (339)
302 1cr0_A DNA primase/helicase; R 27.2 17 0.00057 31.5 0.7 15 16-30 40-54 (296)
303 3p32_A Probable GTPase RV1496/ 27.2 18 0.00063 32.3 1.0 16 14-29 82-97 (355)
304 3gfo_A Cobalt import ATP-bindi 27.1 19 0.00064 31.1 1.0 51 88-139 153-209 (275)
305 3r20_A Cytidylate kinase; stru 27.1 29 0.00099 29.1 2.1 17 16-32 14-30 (233)
306 1m7g_A Adenylylsulfate kinase; 27.1 30 0.001 28.1 2.2 17 16-32 30-46 (211)
307 1aky_A Adenylate kinase; ATP:A 27.1 31 0.0011 28.1 2.4 18 16-33 9-26 (220)
308 2fn4_A P23, RAS-related protei 27.0 21 0.00072 27.5 1.2 18 15-32 13-30 (181)
309 2hxs_A RAB-26, RAS-related pro 26.8 21 0.00071 27.6 1.2 17 15-31 10-26 (178)
310 1gtv_A TMK, thymidylate kinase 26.8 11 0.00037 30.6 -0.6 16 16-31 5-20 (214)
311 3tw8_B RAS-related protein RAB 26.6 21 0.00072 27.5 1.1 18 14-31 12-29 (181)
312 3bwd_D RAC-like GTP-binding pr 26.5 21 0.00071 27.7 1.1 17 16-32 13-29 (182)
313 3b85_A Phosphate starvation-in 26.5 18 0.0006 29.8 0.7 42 90-135 116-159 (208)
314 2cxx_A Probable GTP-binding pr 26.5 17 0.00057 28.5 0.5 17 16-32 6-22 (190)
315 2fh5_B SR-beta, signal recogni 26.5 21 0.00071 28.8 1.1 19 14-32 10-28 (214)
316 1z0f_A RAB14, member RAS oncog 26.4 25 0.00085 27.0 1.5 19 14-32 18-36 (179)
317 2d2e_A SUFC protein; ABC-ATPas 26.4 19 0.00067 30.4 0.9 50 88-139 153-208 (250)
318 3tlx_A Adenylate kinase 2; str 26.3 33 0.0011 28.7 2.4 17 16-32 34-50 (243)
319 1r2q_A RAS-related protein RAB 26.3 21 0.00073 27.1 1.1 17 16-32 11-27 (170)
320 3hws_A ATP-dependent CLP prote 26.3 24 0.00082 31.5 1.6 18 16-33 56-73 (363)
321 1m2o_B GTP-binding protein SAR 26.2 18 0.00063 28.7 0.7 18 15-32 27-44 (190)
322 2fmy_A COOA, carbon monoxide o 26.2 89 0.003 25.0 5.1 46 247-292 164-210 (220)
323 1f6b_A SAR1; gtpases, N-termin 26.2 16 0.00053 29.4 0.3 17 15-31 29-45 (198)
324 1ji0_A ABC transporter; ATP bi 26.2 20 0.00068 30.1 0.9 48 88-137 149-202 (240)
325 3kkq_A RAS-related protein M-R 26.1 21 0.00073 27.7 1.1 18 15-32 22-39 (183)
326 4g1u_C Hemin import ATP-bindin 26.0 20 0.00068 30.7 1.0 16 16-31 42-57 (266)
327 3bc1_A RAS-related protein RAB 26.0 22 0.00074 27.8 1.1 19 14-32 14-32 (195)
328 1mh1_A RAC1; GTP-binding, GTPa 25.9 22 0.00074 27.6 1.1 16 16-31 10-25 (186)
329 1g8p_A Magnesium-chelatase 38 25.9 19 0.00066 31.7 0.9 18 16-33 50-67 (350)
330 2olj_A Amino acid ABC transpor 25.9 21 0.0007 30.6 1.0 49 88-138 169-223 (263)
331 2vda_B Maltoporin; sugar trans 25.8 39 0.0013 17.3 1.6 16 186-201 9-24 (28)
332 1g6h_A High-affinity branched- 25.8 20 0.00069 30.4 0.9 49 88-138 163-217 (257)
333 2bov_A RAla, RAS-related prote 25.8 22 0.00074 28.3 1.1 17 16-32 19-35 (206)
334 1mv5_A LMRA, multidrug resista 25.7 21 0.00071 30.1 1.0 48 88-138 149-202 (243)
335 4e22_A Cytidylate kinase; P-lo 25.7 21 0.00071 30.2 1.0 18 15-32 31-48 (252)
336 2efe_B Small GTP-binding prote 25.6 22 0.00076 27.5 1.1 17 15-31 16-32 (181)
337 2ffh_A Protein (FFH); SRP54, s 25.6 22 0.00074 32.9 1.2 14 16-29 103-116 (425)
338 4dsu_A GTPase KRAS, isoform 2B 25.6 23 0.00077 27.6 1.2 17 16-32 9-25 (189)
339 2a9k_A RAS-related protein RAL 25.6 22 0.00076 27.6 1.1 17 16-32 23-39 (187)
340 2ff7_A Alpha-hemolysin translo 25.6 21 0.0007 30.2 0.9 48 88-138 155-208 (247)
341 2ixe_A Antigen peptide transpo 25.5 21 0.0007 30.7 0.9 16 14-29 48-63 (271)
342 2ghi_A Transport protein; mult 25.4 21 0.00071 30.5 0.9 48 88-138 165-218 (260)
343 1lw7_A Transcriptional regulat 25.3 21 0.00071 32.1 1.0 19 13-31 172-190 (365)
344 3lwf_A LIN1550 protein, putati 25.3 1.5E+02 0.0052 22.9 6.0 61 236-296 28-102 (159)
345 2vli_A Antibiotic resistance p 25.3 21 0.0007 28.0 0.8 17 16-32 10-26 (183)
346 2g3y_A GTP-binding protein GEM 25.3 20 0.00068 29.4 0.8 17 14-30 40-56 (211)
347 2atv_A RERG, RAS-like estrogen 25.2 23 0.00079 28.1 1.2 17 16-32 33-49 (196)
348 3ryp_A Catabolite gene activat 25.2 1.1E+02 0.0037 24.1 5.3 40 251-291 168-208 (210)
349 1sgw_A Putative ABC transporte 25.1 22 0.00075 29.4 1.0 49 88-138 143-197 (214)
350 2qi9_C Vitamin B12 import ATP- 25.0 22 0.00074 30.2 1.0 17 15-31 30-46 (249)
351 1g16_A RAS-related protein SEC 25.0 20 0.00069 27.3 0.7 18 15-32 7-24 (170)
352 2pbr_A DTMP kinase, thymidylat 25.0 24 0.00083 27.8 1.3 17 16-32 5-21 (195)
353 1uj2_A Uridine-cytidine kinase 24.9 21 0.00073 30.0 0.9 18 14-31 25-42 (252)
354 1svi_A GTP-binding protein YSX 24.9 22 0.00074 28.0 0.9 17 16-32 28-44 (195)
355 2dr3_A UPF0273 protein PH0284; 24.8 20 0.0007 29.5 0.8 15 16-30 28-42 (247)
356 1u94_A RECA protein, recombina 24.8 22 0.00076 32.0 1.1 15 16-30 68-82 (356)
357 2xb4_A Adenylate kinase; ATP-b 24.8 36 0.0012 27.9 2.3 17 16-32 5-21 (223)
358 1vpl_A ABC transporter, ATP-bi 24.8 22 0.00076 30.3 1.0 50 88-139 156-211 (256)
359 1vg8_A RAS-related protein RAB 24.7 24 0.00081 28.1 1.2 19 14-32 11-29 (207)
360 2q3h_A RAS homolog gene family 24.6 24 0.0008 28.1 1.1 17 16-32 25-41 (201)
361 2pze_A Cystic fibrosis transme 24.6 22 0.00077 29.5 1.0 51 88-138 140-194 (229)
362 3tqn_A Transcriptional regulat 24.6 1.9E+02 0.0066 20.6 6.9 47 246-292 26-76 (113)
363 3eph_A TRNA isopentenyltransfe 24.6 29 0.00098 31.9 1.8 17 16-32 7-23 (409)
364 2bme_A RAB4A, RAS-related prot 24.6 21 0.00071 27.9 0.7 18 14-31 13-30 (186)
365 3kcc_A Catabolite gene activat 24.5 1.2E+02 0.0041 25.2 5.7 41 251-292 218-259 (260)
366 2nq2_C Hypothetical ABC transp 24.5 23 0.00077 30.1 1.0 50 88-138 138-193 (253)
367 2zu0_C Probable ATP-dependent 24.5 23 0.00077 30.4 1.0 16 14-29 49-64 (267)
368 3bh0_A DNAB-like replicative h 24.5 54 0.0018 28.7 3.5 12 20-31 77-88 (315)
369 2ihy_A ABC transporter, ATP-bi 24.4 23 0.00077 30.6 1.0 48 88-137 171-226 (279)
370 2pez_A Bifunctional 3'-phospho 24.4 25 0.00084 27.6 1.2 16 16-31 10-25 (179)
371 3bfv_A CAPA1, CAPB2, membrane 24.3 26 0.00089 30.0 1.4 10 20-29 92-101 (271)
372 3dv8_A Transcriptional regulat 24.3 1E+02 0.0035 24.4 5.1 42 250-292 169-211 (220)
373 2v54_A DTMP kinase, thymidylat 24.3 26 0.0009 27.9 1.3 17 16-32 9-25 (204)
374 1pui_A ENGB, probable GTP-bind 24.2 19 0.00065 28.9 0.5 16 16-31 31-46 (210)
375 4akg_A Glutathione S-transfera 24.2 1.5E+02 0.0051 34.4 7.6 21 144-164 1411-1431(2695)
376 3ake_A Cytidylate kinase; CMP 24.1 33 0.0011 27.4 1.9 19 15-33 6-24 (208)
377 2yz2_A Putative ABC transporte 24.1 23 0.00078 30.3 0.9 50 88-139 148-203 (266)
378 3pqc_A Probable GTP-binding pr 24.0 23 0.00079 27.7 0.9 19 15-33 27-45 (195)
379 2g6b_A RAS-related protein RAB 23.9 25 0.00085 27.1 1.1 19 14-32 13-31 (180)
380 3nh6_A ATP-binding cassette SU 23.9 23 0.00079 31.1 0.9 17 15-31 84-100 (306)
381 2a5j_A RAS-related protein RAB 23.8 25 0.00086 27.7 1.1 19 14-32 24-42 (191)
382 2ew1_A RAS-related protein RAB 23.8 13 0.00045 30.1 -0.7 19 13-31 28-46 (201)
383 1zbd_A Rabphilin-3A; G protein 23.7 25 0.00086 28.0 1.1 19 14-32 11-29 (203)
384 2y8e_A RAB-protein 6, GH09086P 23.7 22 0.00075 27.3 0.7 16 16-31 19-34 (179)
385 1ksh_A ARF-like protein 2; sma 23.7 25 0.00087 27.4 1.1 17 16-32 23-39 (186)
386 2oil_A CATX-8, RAS-related pro 23.5 26 0.00088 27.6 1.1 18 15-32 29-46 (193)
387 2gau_A Transcriptional regulat 23.4 1.6E+02 0.0054 23.6 6.1 44 248-292 178-222 (232)
388 1gwn_A RHO-related GTP-binding 23.4 22 0.00077 28.7 0.7 19 14-32 31-49 (205)
389 3t8r_A Staphylococcus aureus C 23.3 1.7E+02 0.0059 22.0 5.9 61 236-296 12-86 (143)
390 2yv5_A YJEQ protein; hydrolase 23.3 25 0.00086 30.7 1.1 16 16-31 170-185 (302)
391 2qag_A Septin-2, protein NEDD5 23.3 31 0.0011 31.0 1.7 19 15-33 41-59 (361)
392 3b02_A Transcriptional regulat 23.2 59 0.002 25.6 3.3 42 250-292 139-181 (195)
393 2b6h_A ADP-ribosylation factor 23.1 23 0.00078 28.1 0.7 16 16-31 34-49 (192)
394 4aik_A Transcriptional regulat 22.9 1.6E+02 0.0056 22.1 5.8 51 233-283 29-80 (151)
395 2eyu_A Twitching motility prot 22.9 26 0.0009 29.9 1.1 50 84-136 86-135 (261)
396 1moz_A ARL1, ADP-ribosylation 22.9 20 0.00067 27.9 0.3 17 16-32 23-39 (183)
397 3reg_A RHO-like small GTPase; 22.9 27 0.00091 27.6 1.1 17 16-32 28-44 (194)
398 2il1_A RAB12; G-protein, GDP, 22.8 27 0.00092 27.6 1.1 17 15-31 30-46 (192)
399 1ft9_A Carbon monoxide oxidati 22.7 85 0.0029 25.2 4.3 44 249-292 162-206 (222)
400 2gj8_A MNME, tRNA modification 22.6 21 0.0007 27.8 0.3 18 15-32 8-25 (172)
401 2j1l_A RHO-related GTP-binding 22.6 24 0.00082 28.6 0.8 16 16-31 39-54 (214)
402 3clv_A RAB5 protein, putative; 22.6 28 0.00095 27.4 1.2 19 14-32 10-28 (208)
403 2qu8_A Putative nucleolar GTP- 22.5 27 0.00093 28.6 1.1 20 14-33 32-51 (228)
404 3t5g_A GTP-binding protein RHE 22.5 24 0.00082 27.4 0.7 17 16-32 11-27 (181)
405 3iwz_A CAP-like, catabolite ac 22.4 1.1E+02 0.0036 24.6 4.8 41 251-292 188-229 (230)
406 2p5s_A RAS and EF-hand domain 22.4 28 0.00095 27.7 1.1 18 15-32 32-49 (199)
407 2p5t_B PEZT; postsegregational 22.4 24 0.00082 29.7 0.8 17 16-32 37-53 (253)
408 4bas_A ADP-ribosylation factor 22.3 28 0.00096 27.4 1.1 16 16-31 22-37 (199)
409 1uf9_A TT1252 protein; P-loop, 22.3 23 0.00079 28.2 0.6 19 14-32 11-29 (203)
410 1zd9_A ADP-ribosylation factor 22.2 28 0.00096 27.3 1.1 17 16-32 27-43 (188)
411 2wwf_A Thymidilate kinase, put 22.1 26 0.0009 28.1 0.9 16 16-31 15-30 (212)
412 2vp4_A Deoxynucleoside kinase; 22.0 30 0.001 28.6 1.3 18 16-33 25-42 (230)
413 2gf9_A RAS-related protein RAB 21.9 29 0.00098 27.2 1.1 20 13-32 24-43 (189)
414 3neu_A LIN1836 protein; struct 21.9 1.7E+02 0.0058 21.4 5.4 45 245-289 29-77 (125)
415 1e4v_A Adenylate kinase; trans 21.8 38 0.0013 27.5 1.8 17 16-32 5-21 (214)
416 1nn5_A Similar to deoxythymidy 21.7 27 0.00092 28.1 0.9 16 16-31 14-29 (215)
417 2pjz_A Hypothetical protein ST 21.7 28 0.00094 29.8 1.0 50 88-139 138-190 (263)
418 1ak2_A Adenylate kinase isoenz 21.7 46 0.0016 27.4 2.4 17 16-32 21-37 (233)
419 1z06_A RAS-related protein RAB 21.5 30 0.001 27.1 1.2 17 16-32 25-41 (189)
420 2o52_A RAS-related protein RAB 21.5 26 0.00088 28.0 0.7 18 14-31 28-45 (200)
421 3be4_A Adenylate kinase; malar 21.5 41 0.0014 27.4 2.0 18 16-33 10-27 (217)
422 2gf0_A GTP-binding protein DI- 21.4 26 0.0009 27.6 0.8 18 15-32 12-29 (199)
423 3cio_A ETK, tyrosine-protein k 21.4 28 0.00097 30.3 1.0 10 20-29 114-123 (299)
424 3dz8_A RAS-related protein RAB 21.4 26 0.00089 27.6 0.7 19 14-32 26-44 (191)
425 3oes_A GTPase rhebl1; small GT 21.3 26 0.00089 27.9 0.7 17 16-32 29-45 (201)
426 2bcg_Y Protein YP2, GTP-bindin 21.3 26 0.00089 28.0 0.7 18 14-31 11-28 (206)
427 2h57_A ADP-ribosylation factor 21.1 27 0.00093 27.4 0.8 17 16-32 26-42 (190)
428 2j0v_A RAC-like GTP-binding pr 21.1 26 0.0009 28.1 0.7 17 15-31 13-29 (212)
429 1x3s_A RAS-related protein RAB 21.1 31 0.001 27.0 1.1 17 16-32 20-36 (195)
430 2fg5_A RAB-22B, RAS-related pr 21.0 32 0.0011 27.1 1.2 17 16-32 28-44 (192)
431 2v9p_A Replication protein E1; 21.0 29 0.00098 30.5 0.9 17 16-32 131-147 (305)
432 3tkl_A RAS-related protein RAB 20.9 31 0.0011 27.1 1.1 19 14-32 19-37 (196)
433 3e6c_C CPRK, cyclic nucleotide 20.9 1.2E+02 0.0042 24.8 5.0 44 248-292 175-219 (250)
434 3q3j_B RHO-related GTP-binding 20.9 31 0.0011 28.0 1.1 16 16-31 32-47 (214)
435 3fm5_A Transcriptional regulat 20.9 1.2E+02 0.0042 22.5 4.6 52 232-283 36-88 (150)
436 3dkw_A DNR protein; CRP-FNR, H 20.8 98 0.0034 24.7 4.3 42 249-291 177-219 (227)
437 3la6_A Tyrosine-protein kinase 20.7 30 0.001 29.9 1.1 10 20-29 102-111 (286)
438 3eco_A MEPR; mutlidrug efflux 20.7 1.4E+02 0.0048 21.7 4.9 52 232-283 28-81 (139)
439 2fu5_C RAS-related protein RAB 20.7 24 0.00084 27.4 0.4 17 14-30 11-27 (183)
440 2atx_A Small GTP binding prote 20.5 28 0.00097 27.4 0.8 18 15-32 22-39 (194)
441 2fv8_A H6, RHO-related GTP-bin 20.4 29 0.00098 27.9 0.8 16 16-31 30-45 (207)
442 2grj_A Dephospho-COA kinase; T 20.4 30 0.001 27.9 0.9 17 15-31 16-32 (192)
443 2qag_B Septin-6, protein NEDD5 20.3 31 0.0011 31.9 1.0 20 15-34 46-65 (427)
444 2c9o_A RUVB-like 1; hexameric 20.2 32 0.0011 31.9 1.2 18 16-33 68-85 (456)
445 3bro_A Transcriptional regulat 20.2 1.8E+02 0.0062 21.0 5.4 52 232-283 31-84 (141)
446 2qvo_A Uncharacterized protein 20.1 1.9E+02 0.0065 19.7 5.1 51 251-301 31-85 (95)
447 3r4k_A Transcriptional regulat 20.1 2.9E+02 0.0098 23.1 7.2 66 239-304 7-77 (260)
448 1zj6_A ADP-ribosylation factor 20.1 29 0.00099 27.2 0.7 17 16-32 21-37 (187)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.3e-40 Score=327.29 Aligned_cols=275 Identities=13% Similarity=0.110 Sum_probs=203.6
Q ss_pred hhcccCCCCCchhhHHHHHHhh---hhcceeeccccccccccCcceeehhhhc--cHHHHHHHHHHHhhcccC----CCC
Q 045618 12 AELNRATSCGIVKIRRCLMVFR---LCSTECLSEALWKPSYLNSRAIRESRSI--MNQRVSNKFLGWLVEQEQ----IRT 82 (349)
Q Consensus 12 ~~~~~~~~gGiGKT~la~~~f~---~~~w~~~~~~f~~~~~~~~~~v~~~~~~--~~~~l~~~il~~l~~~~~----~~~ 82 (349)
.....+|||||||||||+.+|. ...-.++...+ |+.++... +...++..|+.++..... ...
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~---------wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~ 223 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIV---------WLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSV 223 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEE---------EEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEE---------EEEECCCCCCCHHHHHHHHHHHHhcCccccccccc
Confidence 3455789999999999998874 22222333333 34444432 678899999999854321 112
Q ss_pred CC-----HHHHHHHHhCCC-ceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchhhcccC-cccEEEcCCCChHh
Q 045618 83 PN-----LPEYVRERLRRT-KVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRVLDNFG-VGNIYKVNGLKYRE 155 (349)
Q Consensus 83 ~~-----~~~~l~~~L~~~-~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~-~~~~~~l~~L~~~e 155 (349)
++ +.+.+++.|.++ ||||||||||+.+++ .+ +. .+||+||||||++.++..++ ...+|+|++|+.+|
T Consensus 224 ~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~-~~----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~e 297 (549)
T 2a5y_B 224 EHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW-AQ----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDE 297 (549)
T ss_dssp TTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH-HH----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHH
T ss_pred ccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc-cc----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHH
Confidence 22 245899999996 999999999998866 22 22 27999999999999988775 44689999999999
Q ss_pred HHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhccCCHHHHHHHHH-HhhcCCCCcHHHHHHHhHhcCC
Q 045618 156 ALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQKSKLDWESALD-NLKRISDPDIYDVLKISYNEIK 234 (349)
Q Consensus 156 a~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~~~~~~~~~l~-~l~~~~~~~l~~~l~~s~~~L~ 234 (349)
|++||.+.++.... .+.+.+.+.+|+++|+|+||||+++|+.++.+. .+|...+. .+.......+..++.+||+.||
T Consensus 298 a~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~ 375 (549)
T 2a5y_B 298 CYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVECITPYSYKSLA 375 (549)
T ss_dssp HHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHH
T ss_pred HHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHHHHhccccccc
Confidence 99999999876543 467788999999999999999999999998764 33333332 2332244567777888888888
Q ss_pred hhHHHHHH-----------HhcccCCCCCHHHHHHHhccc--------------ccHHHhHHHHhhCcceEEcC---CCe
Q 045618 235 AEEKSLFL-----------DIACFFNGQDKDSVLKMIGDS--------------SFAHYGLNVLVDKSLVTVSR---GNQ 286 (349)
Q Consensus 235 ~~~~~~f~-----------~la~fp~~~~~~~l~~~~~~~--------------~~~~~~l~~L~~~sLl~~~~---~~~ 286 (349)
++.+.||+ +||+||++.+.+ +.+|.++ ..+..+|++|+++||++... .++
T Consensus 376 ~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~ 453 (549)
T 2a5y_B 376 MALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLT 453 (549)
T ss_dssp HHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCE
T ss_pred HHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceE
Confidence 88888887 999999984444 5666653 12334899999999999754 347
Q ss_pred EEecHHHHHHHHHHHhhhc
Q 045618 287 LQMHDLLQEMGREIVRQES 305 (349)
Q Consensus 287 ~~mH~lv~~~a~~~~~~e~ 305 (349)
|+|||+||+||+.++.+++
T Consensus 454 ~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 454 FKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp EECCHHHHHHHHTTSCTHH
T ss_pred EEeChHHHHHHHHHHHHHH
Confidence 9999999999998877665
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-36 Score=323.21 Aligned_cols=276 Identities=20% Similarity=0.223 Sum_probs=209.7
Q ss_pred hhcccCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhh--hccHHHHHHHHHHHhhcccC---CCCCC--
Q 045618 12 AELNRATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESR--SIMNQRVSNKFLGWLVEQEQ---IRTPN-- 84 (349)
Q Consensus 12 ~~~~~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~--~~~~~~l~~~il~~l~~~~~---~~~~~-- 84 (349)
......|||||||||||+.++...... ...| +..+.++.++. ..........++..+..... ....+
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~--~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 221 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDHSLL--EGCF----SGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIE 221 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCHHHH--TTTS----TTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHH
T ss_pred CEEEEEeCCCCCHHHHHHHHhcChhHH--HhhC----CCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHH
Confidence 344578899999999998665431100 0001 11222344433 22334445556666633221 11122
Q ss_pred -HHHHHHHHhCCC--ceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchhhcc-cCcccEEEcCC-CChHhHHHH
Q 045618 85 -LPEYVRERLRRT--KVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRVLDN-FGVGNIYKVNG-LKYREALEL 159 (349)
Q Consensus 85 -~~~~l~~~L~~~--~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~-~~~~~~~~l~~-L~~~ea~~L 159 (349)
+.+.++..+.++ ||||||||||+..+|+.+ ++||+||||||++.++.. .+....+.+++ |+.+||++|
T Consensus 222 ~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l 294 (1249)
T 3sfz_A 222 EAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEI 294 (1249)
T ss_dssp HHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHH
T ss_pred HHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHH
Confidence 233778888877 999999999998876654 679999999999998854 45567899996 999999999
Q ss_pred HHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhccCCHHHHHHHHHHhhcCCC-----------CcHHHHHHH
Q 045618 160 FCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQKSKLDWESALDNLKRISD-----------PDIYDVLKI 228 (349)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~~~~~~~~~l~~l~~~~~-----------~~l~~~l~~ 228 (349)
|...++... +.+.+.+.+|+++|+|+||||+++|++|+.++ ..|.++++.+..... .++..+|.+
T Consensus 295 ~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 370 (1249)
T 3sfz_A 295 LSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSI 370 (1249)
T ss_dssp HHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHH
T ss_pred HHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHH
Confidence 998884332 23345688999999999999999999998865 579999988865421 348899999
Q ss_pred hHhcCChhHHHHHHHhcccCCC--CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCe---EEecHHHHHHHHHHHh
Q 045618 229 SYNEIKAEEKSLFLDIACFFNG--QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQ---LQMHDLLQEMGREIVR 302 (349)
Q Consensus 229 s~~~L~~~~~~~f~~la~fp~~--~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~---~~mH~lv~~~a~~~~~ 302 (349)
||+.|++++|.||++||+||++ ++.+.++.+|.++ ..++.+|++|+++||++...++. |+||++||+|+++.+.
T Consensus 371 s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~ 450 (1249)
T 3sfz_A 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNR 450 (1249)
T ss_dssp HHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTG
T ss_pred HHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhh
Confidence 9999999999999999999998 8999999999988 88899999999999999876554 9999999999999877
Q ss_pred hh
Q 045618 303 QE 304 (349)
Q Consensus 303 ~e 304 (349)
++
T Consensus 451 ~~ 452 (1249)
T 3sfz_A 451 SQ 452 (1249)
T ss_dssp GG
T ss_pred HH
Confidence 65
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.4e-35 Score=299.38 Aligned_cols=267 Identities=15% Similarity=0.137 Sum_probs=192.3
Q ss_pred hhcccCCCCCchhhHHHHHHhh---------h-hcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhccc---
Q 045618 12 AELNRATSCGIVKIRRCLMVFR---------L-CSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQE--- 78 (349)
Q Consensus 12 ~~~~~~~~gGiGKT~la~~~f~---------~-~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~--- 78 (349)
......|||||||||||+..+. . ++|+++++.+ +...+...|+..+....
T Consensus 151 RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~-----------------d~~~IL~~Ll~lL~~i~~~~ 213 (1221)
T 1vt4_I 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-----------------SPETVLEMLQKLLYQIDPNW 213 (1221)
T ss_dssp CEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSS-----------------SHHHHHHHHHHHHHHHCSSS
T ss_pred eEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCC-----------------CHHHHHHHHHHHHhhcCccc
Confidence 3455789999999999996653 1 3454444433 55555555555431110
Q ss_pred CCCCC----------CHHHHHHHHh---CCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchhhcccCcccE
Q 045618 79 QIRTP----------NLPEYVRERL---RRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRVLDNFGVGNI 145 (349)
Q Consensus 79 ~~~~~----------~~~~~l~~~L---~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~~~~~ 145 (349)
..... ...+.+++.| .++|+||||||||+.++|+.+ .+||+||||||++.++..+.....
T Consensus 214 ~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~l~g~~v 286 (1221)
T 1vt4_I 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAATT 286 (1221)
T ss_dssp TTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHHHHHHSS
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHhcCCCeE
Confidence 00111 1122566655 789999999999999888876 268999999999998764433334
Q ss_pred EEcC------CCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhccC--CHHHHHHHHHHhhcC
Q 045618 146 YKVN------GLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQK--SKLDWESALDNLKRI 217 (349)
Q Consensus 146 ~~l~------~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~--~~~~~~~~l~~l~~~ 217 (349)
+.++ +|+.+||++||.+.. +.. . .+...+ .|+|+||||+++|+.|+.+ +...|...
T Consensus 287 y~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~------- 350 (1221)
T 1vt4_I 287 THISLDHHSMTLTPDEVKSLLLKYL-DCR--P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV------- 350 (1221)
T ss_dssp CEEEECSSSSCCCHHHHHHHHHHHH-CCC--T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------
T ss_pred EEecCccccCCcCHHHHHHHHHHHc-CCC--H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------
Confidence 6666 899999999999984 322 1 122233 3999999999999999986 67778653
Q ss_pred CCCcHHHHHHHhHhcCChhH-HHHHHHhcccCCC--CCHHHHHHHhccc--ccHHHhHHHHhhCcceEEcC-CCeEEecH
Q 045618 218 SDPDIYDVLKISYNEIKAEE-KSLFLDIACFFNG--QDKDSVLKMIGDS--SFAHYGLNVLVDKSLVTVSR-GNQLQMHD 291 (349)
Q Consensus 218 ~~~~l~~~l~~s~~~L~~~~-~~~f~~la~fp~~--~~~~~l~~~~~~~--~~~~~~l~~L~~~sLl~~~~-~~~~~mH~ 291 (349)
....+..+|.+||+.|+++. |.||++||+||++ ++.+.+..+|.++ ..++.+|++|+++||++... .++|+|||
T Consensus 351 ~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHD 430 (1221)
T 1vt4_I 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430 (1221)
T ss_dssp SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCC
T ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehH
Confidence 34679999999999999999 9999999999987 7888999999987 36888999999999999863 57899999
Q ss_pred HHHHHHHHHHhhhcCCCCCCeeeeccchhHHH
Q 045618 292 LLQEMGREIVRQESIEQPGKRSRLWYYEDVYN 323 (349)
Q Consensus 292 lv~~~a~~~~~~e~~~~~~~~~rl~~~~d~~~ 323 (349)
|+++++ ......+...+|+..+.+..+
T Consensus 431 LllELr-----~~~~e~~alHrRLvd~Y~~~~ 457 (1221)
T 1vt4_I 431 IYLELK-----VKLENEYALHRSIVDHYNIPK 457 (1221)
T ss_dssp HHHHHH-----HHHSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHh-----cCCCcHHHHHHHHHHHHHhhC
Confidence 998843 111123444555555444443
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=275.26 Aligned_cols=201 Identities=24% Similarity=0.342 Sum_probs=166.2
Q ss_pred HHHHHhCC--CceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchhhcccCcccEEEc---CCCChHhHHHHHHH
Q 045618 88 YVRERLRR--TKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRVLDNFGVGNIYKV---NGLKYREALELFCN 162 (349)
Q Consensus 88 ~l~~~L~~--~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~~~~~~~~l---~~L~~~ea~~L~~~ 162 (349)
.++..+.+ +++||||||+|+...++.+ +++++||||||++.++..+. ...+++ ++|+.+|+++||..
T Consensus 226 ~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~ 297 (591)
T 1z6t_A 226 RLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSL 297 (591)
T ss_dssp HHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHH
T ss_pred HHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHH
Confidence 67777766 7899999999997766543 57899999999998776543 234555 58999999999999
Q ss_pred hhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhccCCHHHHHHHHHHhhcCC-----------CCcHHHHHHHhHh
Q 045618 163 CAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQKSKLDWESALDNLKRIS-----------DPDIYDVLKISYN 231 (349)
Q Consensus 163 ~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~~~~~~~~~l~~l~~~~-----------~~~l~~~l~~s~~ 231 (349)
.++.. .....+.+.+|+++|+|+||||.++|++++... ..|..+++.+.... ..++..++..||+
T Consensus 298 ~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~ 373 (591)
T 1z6t_A 298 FVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVE 373 (591)
T ss_dssp HHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHH
T ss_pred HhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHH
Confidence 88542 122245678999999999999999999998764 46888888876542 1368899999999
Q ss_pred cCChhHHHHHHHhcccCCC--CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCC---CeEEecHHHHHHHHHH
Q 045618 232 EIKAEEKSLFLDIACFFNG--QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRG---NQLQMHDLLQEMGREI 300 (349)
Q Consensus 232 ~L~~~~~~~f~~la~fp~~--~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~---~~~~mH~lv~~~a~~~ 300 (349)
.|+++.+.||+++|+||++ ++.+.+..+|..+ ..+...++.|+++||+....+ .+|+||+++|+|+++.
T Consensus 374 ~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 374 MLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 9999999999999999986 8889999999987 778899999999999996543 3699999999999987
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.52 E-value=1.8e-12 Score=119.31 Aligned_cols=190 Identities=12% Similarity=0.068 Sum_probs=119.7
Q ss_pred CceEEEEecCCCch--------hHHHHHcccCCCCCCcEEEEEeCcchhhcc----------c--CcccEEEcCCCChHh
Q 045618 96 TKVLIVLDDVNKVG--------QLEYLIGGLERFGPGSRIIVTTRDRRVLDN----------F--GVGNIYKVNGLKYRE 155 (349)
Q Consensus 96 ~~~LlVlDdv~~~~--------~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~----------~--~~~~~~~l~~L~~~e 155 (349)
++.+|||||++... .+..++..+....++..+|+|++....... + .....+.+++|+.+|
T Consensus 128 ~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e 207 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDT 207 (350)
T ss_dssp SCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHH
T ss_pred CCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHH
Confidence 38999999997633 222222222111357889999887543111 1 112479999999999
Q ss_pred HHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhcc-CCHHHH-HHHHHHhhcCCCCcHHHHHHHhHhcC
Q 045618 156 ALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQ-KSKLDW-ESALDNLKRISDPDIYDVLKISYNEI 233 (349)
Q Consensus 156 a~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~-~~~~~~-~~~l~~l~~~~~~~l~~~l~~s~~~L 233 (349)
+.+++........... ..+.+..+.+.|+|+|+++..++..+.. .+...+ ..+.+. +...+...+..+
T Consensus 208 ~~~~l~~~~~~~~~~~--~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~l 277 (350)
T 2qen_A 208 SVEFLKRGFREVNLDV--PENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV--------AKGLIMGELEEL 277 (350)
T ss_dssp HHHHHHHHHHTTTCCC--CHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH--------HHHHHHHHHHHH
Confidence 9999987542211111 1346789999999999999999876532 222222 111111 111122222333
Q ss_pred ---ChhHHHHHHHhcccCCCCCHHHHHHHh-----ccc-ccHHHhHHHHhhCcceEEcCCCeEEe-cHHHHHHHH
Q 045618 234 ---KAEEKSLFLDIACFFNGQDKDSVLKMI-----GDS-SFAHYGLNVLVDKSLVTVSRGNQLQM-HDLLQEMGR 298 (349)
Q Consensus 234 ---~~~~~~~f~~la~fp~~~~~~~l~~~~-----~~~-~~~~~~l~~L~~~sLl~~~~~~~~~m-H~lv~~~a~ 298 (349)
++..+.++..+|. +..+...+.... ... .....+++.|.+.+||... ++.|++ |+++++|.+
T Consensus 278 ~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 278 RRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 6788999999998 346667776665 333 4567889999999999986 567776 788888764
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.43 E-value=6.8e-12 Score=115.60 Aligned_cols=190 Identities=16% Similarity=0.089 Sum_probs=117.2
Q ss_pred CceEEEEecCCCch-----hHHHHHcccCCCCCCcEEEEEeCcchhhc----------cc-C-cccEEEcCCCChHhHHH
Q 045618 96 TKVLIVLDDVNKVG-----QLEYLIGGLERFGPGSRIIVTTRDRRVLD----------NF-G-VGNIYKVNGLKYREALE 158 (349)
Q Consensus 96 ~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~~IlvTTR~~~~~~----------~~-~-~~~~~~l~~L~~~ea~~ 158 (349)
++.+|||||++... .+..++..+....++..+|+|++...... .+ + ....+.+++|+.+|+.+
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHH
Confidence 48999999997532 22222222211134788999999764311 11 1 12579999999999999
Q ss_pred HHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhcc-CCHHHHH-HHHHHhhcCCCCcHHHHHHHhH---hcC
Q 045618 159 LFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQ-KSKLDWE-SALDNLKRISDPDIYDVLKISY---NEI 233 (349)
Q Consensus 159 L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~-~~~~~~~-~~l~~l~~~~~~~l~~~l~~s~---~~L 233 (349)
++.............. ..|++.|+|+|+++..++..+.. .+...|. .+.+.... .+...+.-.+ ..|
T Consensus 217 ~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~l 288 (357)
T 2fna_A 217 FLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----LILKEFENFLHGREIA 288 (357)
T ss_dssp HHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----HHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----HHHHHHHHHhhccccc
Confidence 9987542111111121 68999999999999999877643 3333332 11111100 0111122111 167
Q ss_pred ChhHHHHHHHhcccCCCCCHHHHHH----Hhc--cc-ccHHHhHHHHhhCcceEEcCCCeEE-ecHHHHHHH
Q 045618 234 KAEEKSLFLDIACFFNGQDKDSVLK----MIG--DS-SFAHYGLNVLVDKSLVTVSRGNQLQ-MHDLLQEMG 297 (349)
Q Consensus 234 ~~~~~~~f~~la~fp~~~~~~~l~~----~~~--~~-~~~~~~l~~L~~~sLl~~~~~~~~~-mH~lv~~~a 297 (349)
++..+.++..+|+ +. +...+.. ... .. .....+++.|.+.+||... ++.|+ -|++++++.
T Consensus 289 ~~~~~~~l~~la~--g~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 289 RKRYLNIMRTLSK--CG-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHTT--CB-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHHT
T ss_pred cHHHHHHHHHHHc--CC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHhh
Confidence 8888999999998 33 6666653 333 22 4567789999999999986 46777 478998874
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.34 E-value=3.1e-11 Score=113.68 Aligned_cols=267 Identities=15% Similarity=0.066 Sum_probs=142.8
Q ss_pred CCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCH---HHHHHHHh
Q 045618 17 ATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNL---PEYVRERL 93 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~---~~~l~~~L 93 (349)
.|+.|+|||++++..+.......-...+ ...+.++......+...+..+++..+.........+. .+.+.+.+
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 133 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSEAAAKEGL----TVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNL 133 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHHHHTTC----CEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHhccCC----ceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 7899999999998655432110000000 0011122322334667788888887732111111122 22555555
Q ss_pred C--CCceEEEEecCCCc--------hhHHHHHcccCCC---C--CCcEEEEEeCcchhhccc---------CcccEEEcC
Q 045618 94 R--RTKVLIVLDDVNKV--------GQLEYLIGGLERF---G--PGSRIIVTTRDRRVLDNF---------GVGNIYKVN 149 (349)
Q Consensus 94 ~--~~~~LlVlDdv~~~--------~~~~~l~~~~~~~---~--~~~~IlvTTR~~~~~~~~---------~~~~~~~l~ 149 (349)
. +++++|||||++.. +.+..+...+... + ....+|+||+...+...+ .....+.++
T Consensus 134 ~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~ 213 (412)
T 1w5s_A 134 YVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLP 213 (412)
T ss_dssp HHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECC
T ss_pred HhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeC
Confidence 4 67999999999753 3333333322111 2 445688888765532111 112239999
Q ss_pred CCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcC------CCchHHHHHhHHhc------cC---CHHHHHHHHHHh
Q 045618 150 GLKYREALELFCNCAFKENHCPEDLLVHSKRILDYAN------GNPLAVRVLGSFLR------QK---SKLDWESALDNL 214 (349)
Q Consensus 150 ~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~------glPLAl~~~a~~l~------~~---~~~~~~~~l~~l 214 (349)
+++.++..++|...+........-..+.+..|++.|+ |.|..+..+..... .. +...+...+...
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 9999999999976542111111112356778899999 99975554433211 11 233333333332
Q ss_pred hcCCCCcHHHHHHHhHhcCChhHHHHHHHhcccC----CCCCHHHHHH--------Hhccc----ccHHHhHHHHhhCcc
Q 045618 215 KRISDPDIYDVLKISYNEIKAEEKSLFLDIACFF----NGQDKDSVLK--------MIGDS----SFAHYGLNVLVDKSL 278 (349)
Q Consensus 215 ~~~~~~~l~~~l~~s~~~L~~~~~~~f~~la~fp----~~~~~~~l~~--------~~~~~----~~~~~~l~~L~~~sL 278 (349)
.. ...+..++..||+..+.++..++.+. ..++...+.. ..... .....+++.|.+.+|
T Consensus 294 ~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gl 367 (412)
T 1w5s_A 294 EA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGL 367 (412)
T ss_dssp ------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTS
T ss_pred hc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCC
Confidence 10 22344467789999999998888653 2255544332 22211 234577999999999
Q ss_pred eEEcC-----CCeEEecHHH
Q 045618 279 VTVSR-----GNQLQMHDLL 293 (349)
Q Consensus 279 l~~~~-----~~~~~mH~lv 293 (349)
|.... .|+|++|.|.
T Consensus 368 i~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 368 VDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp EEEECC-------CCEEEEC
T ss_pred EEeecccCCCCCceeEEEeC
Confidence 98653 3446555443
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.06 E-value=1.8e-08 Score=93.70 Aligned_cols=250 Identities=13% Similarity=0.021 Sum_probs=143.4
Q ss_pred cCCCCCchhhHHHHHHhhhhcceee-ccccccccccCcceeehhhhc-cHHHHHHHHHHHhhcccCCC----CCCHHHHH
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECL-SEALWKPSYLNSRAIRESRSI-MNQRVSNKFLGWLVEQEQIR----TPNLPEYV 89 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~-~~~f~~~~~~~~~~v~~~~~~-~~~~l~~~il~~l~~~~~~~----~~~~~~~l 89 (349)
..|+.|+|||++|+........... ...+ + ...+..+...... +...+..+++.++.+..... .....+.+
T Consensus 50 l~G~~G~GKT~la~~l~~~~~~~~~~~~~~--~-~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 126 (384)
T 2qby_B 50 FLGLTGTGKTFVSKYIFNEIEEVKKEDEEY--K-DVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKI 126 (384)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHHHHSSSS--T-TCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhhhhcCC--C-CceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 4567899999999866543211000 0000 0 0011223333334 66677788888774432221 12223367
Q ss_pred HHHhCCCceEEEEecCCCch------h-HHHHHcccCCCCCCcEEEEEeCcchhhccc------CcccEEEcCCCChHhH
Q 045618 90 RERLRRTKVLIVLDDVNKVG------Q-LEYLIGGLERFGPGSRIIVTTRDRRVLDNF------GVGNIYKVNGLKYREA 156 (349)
Q Consensus 90 ~~~L~~~~~LlVlDdv~~~~------~-~~~l~~~~~~~~~~~~IlvTTR~~~~~~~~------~~~~~~~l~~L~~~ea 156 (349)
.+.+..++.+||||+++... . +..+.... .+..+|+||+.......+ .....+.+++++.++.
T Consensus 127 ~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~ 202 (384)
T 2qby_B 127 KNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQL 202 (384)
T ss_dssp HHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHH
T ss_pred HHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHH
Confidence 77787777799999997532 2 33333332 678899999876321111 1123899999999999
Q ss_pred HHHHHHhhcc---CCCCChhHHHHHHHHHHHcC---CCch-HHHHHhHHh--c----cCCHHHHHHHHHHhhcCCCCcHH
Q 045618 157 LELFCNCAFK---ENHCPEDLLVHSKRILDYAN---GNPL-AVRVLGSFL--R----QKSKLDWESALDNLKRISDPDIY 223 (349)
Q Consensus 157 ~~L~~~~a~~---~~~~~~~~~~~~~~i~~~c~---glPL-Al~~~a~~l--~----~~~~~~~~~~l~~l~~~~~~~l~ 223 (349)
.+++...+.. ..... .+....+++.++ |.|. |+..+-... . .-+.+.+...++... .
T Consensus 203 ~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~-------~ 272 (384)
T 2qby_B 203 KFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE-------Q 272 (384)
T ss_dssp HHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------c
Confidence 9999987532 12222 244567777787 8876 444333222 1 124666666666542 2
Q ss_pred HHHHHhHhcCChhHHHHHHHhcccCC-C-C--CHHHHHHHhccc----ccHHHhHHHHhhCcceEEc
Q 045618 224 DVLKISYNEIKAEEKSLFLDIACFFN-G-Q--DKDSVLKMIGDS----SFAHYGLNVLVDKSLVTVS 282 (349)
Q Consensus 224 ~~l~~s~~~L~~~~~~~f~~la~fp~-~-~--~~~~l~~~~~~~----~~~~~~l~~L~~~sLl~~~ 282 (349)
..+..++..|++..+..+..++.... + + ....+....+.. .....+++.|.+.++++..
T Consensus 273 ~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 273 ERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred chHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 45667788999988888877776112 1 1 111112222111 2456779999999999974
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.91 E-value=5.9e-08 Score=90.02 Aligned_cols=252 Identities=14% Similarity=0.031 Sum_probs=133.7
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCC-CCCCHHH---HHHH
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQI-RTPNLPE---YVRE 91 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~-~~~~~~~---~l~~ 91 (349)
..|+.|+|||++++......... .... ..+..+..........+...++..+ +.... ...+..+ .+.+
T Consensus 50 i~G~~G~GKTtl~~~l~~~~~~~-~~~~------~~~~~i~~~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~l~~ 121 (386)
T 2qby_A 50 IYGLTGTGKTAVVKFVLSKLHKK-FLGK------FKHVYINTRQIDTPYRVLADLLESL-DVKVPFTGLSIAELYRRLVK 121 (386)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHH-TCSS------CEEEEEEHHHHCSHHHHHHHHTTTT-SCCCCSSSCCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHH-hcCC------ceEEEEECCCCCCHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHH
Confidence 45678999999998655432100 0000 0111223233334555666666554 21111 1112222 4445
Q ss_pred HhC--CCceEEEEecCCC------chhHHHHHcccCC-CCCCcEEEEEeCcchhhcccC-------cccEEEcCCCChHh
Q 045618 92 RLR--RTKVLIVLDDVNK------VGQLEYLIGGLER-FGPGSRIIVTTRDRRVLDNFG-------VGNIYKVNGLKYRE 155 (349)
Q Consensus 92 ~L~--~~~~LlVlDdv~~------~~~~~~l~~~~~~-~~~~~~IlvTTR~~~~~~~~~-------~~~~~~l~~L~~~e 155 (349)
.+. +++.+||||+++. ...+..+...+.. ...+..+|+||+.......+. ....+.+++++.++
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~ 201 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEE 201 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHH
T ss_pred HHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHH
Confidence 554 3489999999964 3344444333211 134667788887664322221 12479999999999
Q ss_pred HHHHHHHhhccCCCCChhHHHHHHHHHHHcC---CCchHH-HHHhHHhc-----c---CCHHHHHHHHHHhhcCCCCcHH
Q 045618 156 ALELFCNCAFKENHCPEDLLVHSKRILDYAN---GNPLAV-RVLGSFLR-----Q---KSKLDWESALDNLKRISDPDIY 223 (349)
Q Consensus 156 a~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~---glPLAl-~~~a~~l~-----~---~~~~~~~~~l~~l~~~~~~~l~ 223 (349)
..+++...+........-..+....+++.++ |.|..+ .++..... + -+...+...++... .
T Consensus 202 ~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~ 274 (386)
T 2qby_A 202 LEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE-------R 274 (386)
T ss_dssp HHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------h
Confidence 9999987652111011112344566777776 998843 33322211 1 13445555544431 2
Q ss_pred HHHHHhHhcCChhHHHHHHHhcccCC-C---CCHHHH-------HHHhccc----ccHHHhHHHHhhCcceEEc
Q 045618 224 DVLKISYNEIKAEEKSLFLDIACFFN-G---QDKDSV-------LKMIGDS----SFAHYGLNVLVDKSLVTVS 282 (349)
Q Consensus 224 ~~l~~s~~~L~~~~~~~f~~la~fp~-~---~~~~~l-------~~~~~~~----~~~~~~l~~L~~~sLl~~~ 282 (349)
..+..++..++...+..+..++.+.. + +....+ ....... .....+++.|.+.++|...
T Consensus 275 ~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 275 DRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred chHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 34666778899888888877774322 2 334322 2222211 2356779999999999864
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.87 E-value=1.6e-07 Score=87.22 Aligned_cols=253 Identities=13% Similarity=0.035 Sum_probs=136.9
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHH---HHHHH
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPE---YVRER 92 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~---~l~~~ 92 (349)
..|+.|+|||++|+..........-.... ...+..+......+...+...++..+.........+..+ .+.+.
T Consensus 49 l~G~~G~GKT~l~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 124 (387)
T 2v1u_A 49 LYGLTGTGKTAVARLVLRRLEARASSLGV----LVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKR 124 (387)
T ss_dssp ECBCTTSSHHHHHHHHHHHHHHHHHHHTC----CEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHhccCC----CeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 56678999999998655432110000000 001112333333456677777887773211111122222 55556
Q ss_pred h--CCCceEEEEecCCCch----h---HHHHHcccCCC--CCCcEEEEEeCcchhhccc------Cc-ccEEEcCCCChH
Q 045618 93 L--RRTKVLIVLDDVNKVG----Q---LEYLIGGLERF--GPGSRIIVTTRDRRVLDNF------GV-GNIYKVNGLKYR 154 (349)
Q Consensus 93 L--~~~~~LlVlDdv~~~~----~---~~~l~~~~~~~--~~~~~IlvTTR~~~~~~~~------~~-~~~~~l~~L~~~ 154 (349)
+ .+++.+||||+++... . +..+....... ..+..+|.||+..+....+ .. ...+.+++++.+
T Consensus 125 l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~ 204 (387)
T 2v1u_A 125 LSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAP 204 (387)
T ss_dssp HTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHH
T ss_pred HhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHH
Confidence 5 3468899999998542 1 22223222211 3456778888766322111 11 147899999999
Q ss_pred hHHHHHHHhhcc---CCCCChhHHHHHHHHHHHcC---CCch-HHHHHhHHhc-----c---CCHHHHHHHHHHhhcCCC
Q 045618 155 EALELFCNCAFK---ENHCPEDLLVHSKRILDYAN---GNPL-AVRVLGSFLR-----Q---KSKLDWESALDNLKRISD 219 (349)
Q Consensus 155 ea~~L~~~~a~~---~~~~~~~~~~~~~~i~~~c~---glPL-Al~~~a~~l~-----~---~~~~~~~~~l~~l~~~~~ 219 (349)
+..+++...+.. ..... .+....+++.++ |.|. ++.++..... + -+.+.+...++...
T Consensus 205 ~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~---- 277 (387)
T 2v1u_A 205 QLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE---- 277 (387)
T ss_dssp HHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh----
Confidence 999999987532 12222 234567777787 9993 3333222211 1 13555555555432
Q ss_pred CcHHHHHHHhHhcCChhHHHHHHHhcccCCC---CCHHHHHHHhc-------cc----ccHHHhHHHHhhCcceEEc
Q 045618 220 PDIYDVLKISYNEIKAEEKSLFLDIACFFNG---QDKDSVLKMIG-------DS----SFAHYGLNVLVDKSLVTVS 282 (349)
Q Consensus 220 ~~l~~~l~~s~~~L~~~~~~~f~~la~fp~~---~~~~~l~~~~~-------~~----~~~~~~l~~L~~~sLl~~~ 282 (349)
...+..++..|++..+..+..++....+ +....+..... .. ..+..+++.|...|+++..
T Consensus 278 ---~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 278 ---RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp ---HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 2345667889999888887777633223 44443333221 11 2456789999999999974
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.85 E-value=1.5e-07 Score=87.52 Aligned_cols=252 Identities=13% Similarity=0.000 Sum_probs=138.1
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHH---HHHHH
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPE---YVRER 92 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~---~l~~~ 92 (349)
..|+.|+|||++++.......... .+ .+..+......+...+...++..+............+ .+...
T Consensus 49 i~G~~G~GKTtl~~~l~~~~~~~~---~~------~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 119 (389)
T 1fnn_A 49 LLGRPGTGKTVTLRKLWELYKDKT---TA------RFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEH 119 (389)
T ss_dssp EECCTTSSHHHHHHHHHHHHTTSC---CC------EEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHhhhc---Ce------eEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHH
Confidence 567789999999986554321100 00 1111222233355667777777662211111112222 34444
Q ss_pred hC--CCceEEEEecCCCc--hhHHHHHcccCCCC----CCcEEEEEeCcchhhcccC-------cccEEEcCCCChHhHH
Q 045618 93 LR--RTKVLIVLDDVNKV--GQLEYLIGGLERFG----PGSRIIVTTRDRRVLDNFG-------VGNIYKVNGLKYREAL 157 (349)
Q Consensus 93 L~--~~~~LlVlDdv~~~--~~~~~l~~~~~~~~----~~~~IlvTTR~~~~~~~~~-------~~~~~~l~~L~~~ea~ 157 (349)
+. +++.+||||+++.. .....+...+.... .+..||++|+.......+. ....+.+++++.++..
T Consensus 120 l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~ 199 (389)
T 1fnn_A 120 LRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIF 199 (389)
T ss_dssp HHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHH
T ss_pred HhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHH
Confidence 43 56889999999754 34455544432211 4677888887764322221 1236999999999999
Q ss_pred HHHHHhhccCCCCChhHHHHHHHHHHHc---------CCCchHHHHHhHH-hc-----c---CCHHHHHHHHHHhhcCCC
Q 045618 158 ELFCNCAFKENHCPEDLLVHSKRILDYA---------NGNPLAVRVLGSF-LR-----Q---KSKLDWESALDNLKRISD 219 (349)
Q Consensus 158 ~L~~~~a~~~~~~~~~~~~~~~~i~~~c---------~glPLAl~~~a~~-l~-----~---~~~~~~~~~l~~l~~~~~ 219 (349)
+++...+........-..+....+++.+ +|.|..+..+... .. + -+.............
T Consensus 200 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~--- 276 (389)
T 1fnn_A 200 DILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF--- 276 (389)
T ss_dssp HHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC---
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh---
Confidence 9998876321100111245677888888 7887544333222 11 1 123333333333221
Q ss_pred CcHHHHHHHhHhcCChhHHHHHHHhcccC---C--CCCHHHHHHHhcc-------c----ccHHHhHHHHhhCcceEEcC
Q 045618 220 PDIYDVLKISYNEIKAEEKSLFLDIACFF---N--GQDKDSVLKMIGD-------S----SFAHYGLNVLVDKSLVTVSR 283 (349)
Q Consensus 220 ~~l~~~l~~s~~~L~~~~~~~f~~la~fp---~--~~~~~~l~~~~~~-------~----~~~~~~l~~L~~~sLl~~~~ 283 (349)
. .+.-.+..|+.+.+.++..++.+. . .++...+...+.. . .....+++.|.+.++|....
T Consensus 277 ~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 277 G----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp C----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred h----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEee
Confidence 1 123346778888888877777543 2 3555555444332 1 23456799999999999753
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.62 E-value=1.5e-07 Score=81.10 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=72.4
Q ss_pred CCCceEEEEecCCC--chhHHHHHcccCCCCCCcEEEEEeCcchhhc-cc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNK--VGQLEYLIGGLERFGPGSRIIVTTRDRRVLD-NF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~-~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.+++.+||+||++. ...+..+...+.....+..+|+||+...... .+ .....+++++++.++..+++...+.....
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 35679999999975 4456666655544456788888887654221 11 22357999999999999999987744332
Q ss_pred CChhHHHHHHHHHHHcCCCchHHHHHhHHh
Q 045618 170 CPEDLLVHSKRILDYANGNPLAVRVLGSFL 199 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPLAl~~~a~~l 199 (349)
.. ..+....|++.|+|.|..+..+...+
T Consensus 204 ~~--~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 AH--EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CB--CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 21 13557789999999999887766543
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.40 E-value=5.1e-06 Score=70.35 Aligned_cols=100 Identities=10% Similarity=0.063 Sum_probs=66.0
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcchhh-ccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRRVL-DNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~~~-~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++.+||+||++.. ...+.+...+.....++.+|+||+..... ..+ .....+.+++++.++..+++...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 57889999999854 33444544443345678888888775421 111 122379999999999999998876432221
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHHh
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRVLG 196 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~~a 196 (349)
. ..+....+++.++|.|..+..+.
T Consensus 181 ~--~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 181 I--TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp B--CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 13456788899999998654443
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=1.1e-05 Score=72.85 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=65.4
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcchh-hccc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRRV-LDNF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~~-~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.+++.++|+||++.. ...+.+...+.....++.+|+||+...- ...+ .....+++++++.++..+++...+.....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 456899999999853 3344444444333567788888876532 1221 22348999999999999999887632221
Q ss_pred CChhHHHHHHHHHHHcCCCch-HHHHHh
Q 045618 170 CPEDLLVHSKRILDYANGNPL-AVRVLG 196 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPL-Al~~~a 196 (349)
.. .++.+..|++.++|.|. |+..+.
T Consensus 185 ~~--~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 185 KY--TNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 13556789999999995 444443
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.18 E-value=0.00025 Score=63.92 Aligned_cols=184 Identities=13% Similarity=0.083 Sum_probs=107.6
Q ss_pred CceEEEEecCCCch--hHHHHHcccCCC------------------CCCcEEEEEeCcchhh-ccc--CcccEEEcCCCC
Q 045618 96 TKVLIVLDDVNKVG--QLEYLIGGLERF------------------GPGSRIIVTTRDRRVL-DNF--GVGNIYKVNGLK 152 (349)
Q Consensus 96 ~~~LlVlDdv~~~~--~~~~l~~~~~~~------------------~~~~~IlvTTR~~~~~-~~~--~~~~~~~l~~L~ 152 (349)
+..+|+||+++... ....+...+... .++..+|.||...... ..+ .....+.+++++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 56799999998643 233333222110 1245677666654322 111 123479999999
Q ss_pred hHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhccC---------CHHHHHHHHHHhhcCCCCcHH
Q 045618 153 YREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLRQK---------SKLDWESALDNLKRISDPDIY 223 (349)
Q Consensus 153 ~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~~~---------~~~~~~~~l~~l~~~~~~~l~ 223 (349)
.+|..+++...+....... ..+....+++.++|.|..+..+...+... +.......+..+
T Consensus 170 ~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~--------- 238 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL--------- 238 (324)
T ss_dssp HHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---------
Confidence 9999999988764332221 13557789999999998877665544221 222333333222
Q ss_pred HHHHHhHhcCChhHHHHHHHhc-ccCCC-CCHHHHHHHhccc-ccHHHhHHH-HhhCcceEEcCCCeEEecHHHH
Q 045618 224 DVLKISYNEIKAEEKSLFLDIA-CFFNG-QDKDSVLKMIGDS-SFAHYGLNV-LVDKSLVTVSRGNQLQMHDLLQ 294 (349)
Q Consensus 224 ~~l~~s~~~L~~~~~~~f~~la-~fp~~-~~~~~l~~~~~~~-~~~~~~l~~-L~~~sLl~~~~~~~~~mH~lv~ 294 (349)
..+...++...+..+..+. .+.++ +....+...++.. ......++. +++.+|+.....|+ .+-+...
T Consensus 239 ---~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~-~~~~~~~ 309 (324)
T 1hqc_A 239 ---GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGR-VPTELAY 309 (324)
T ss_dssp ---TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEE-EECHHHH
T ss_pred ---cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccc-eecHHHH
Confidence 1234557776777776554 34333 7788888887766 444444554 88999998775554 4444433
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=9e-05 Score=66.80 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=66.1
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcchh-hccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRRV-LDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~~-~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++.++|+|+++.. ...+.+...+.....++++|+||..... ...+ .....+.+++++.++..+++...+......
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 56889999999854 3455555544444567888888876542 1111 122378999999999999998876433221
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHHh
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRVLG 196 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~~a 196 (349)
-.++....|++.++|.|..+..+.
T Consensus 189 --~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 189 --LTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp --ECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 123556788899999998654443
No 17
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.69 E-value=0.00015 Score=66.66 Aligned_cols=100 Identities=12% Similarity=0.071 Sum_probs=65.6
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcchh-hccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRRV-LDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~~-~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++.++|+|+++.. ...+.+...+.....+..+|++|....- ...+ .....+++++++.++..+++...+......
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 46789999999753 3455555555444556777777765432 2221 223579999999999999998765322211
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHHh
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRVLG 196 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~~a 196 (349)
. ..+.+..|++.++|.|..+..+.
T Consensus 198 ~--~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 198 H--EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp B--CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred C--CHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 13456789999999998776554
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.59 E-value=0.001 Score=59.48 Aligned_cols=98 Identities=10% Similarity=0.101 Sum_probs=65.5
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++.++|+|+++.. ...+.+...+.....++.+|+||.... +...+ .....+++++++.++..+++...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 56889999999854 345566666655556778888886654 22221 223479999999999999998776433222
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRV 194 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~ 194 (349)
. .++....+++.++|.|..+..
T Consensus 181 i--~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 181 I--TEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp B--CHHHHHHHHHTTTTCHHHHHH
T ss_pred C--CHHHHHHHHHHcCCCHHHHHH
Confidence 1 134567788889998875443
No 19
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.50 E-value=0.0084 Score=54.19 Aligned_cols=185 Identities=13% Similarity=0.128 Sum_probs=105.9
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCC------------------CCCcEEEEEeCcchhhc-cc--CcccEEEcCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERF------------------GPGSRIIVTTRDRRVLD-NF--GVGNIYKVNGL 151 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~------------------~~~~~IlvTTR~~~~~~-~~--~~~~~~~l~~L 151 (349)
.+..+|+||+++.. .....+...+... .++..+|.+|....... .+ .....+.++++
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFY 184 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCc
Confidence 35678999999854 2233333322111 11245666665543211 11 22357999999
Q ss_pred ChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhc------cC---CHHHHHHHHHHhhcCCCCcH
Q 045618 152 KYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLR------QK---SKLDWESALDNLKRISDPDI 222 (349)
Q Consensus 152 ~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~------~~---~~~~~~~~l~~l~~~~~~~l 222 (349)
+.++...++...+...... -..+....|++.+.|.|-.+..+...+. .. +.......+..
T Consensus 185 ~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~--------- 253 (338)
T 3pfi_A 185 KDSELALILQKAALKLNKT--CEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS--------- 253 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH---------
T ss_pred CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH---------
Confidence 9999999998876433211 1235567788889999855544433221 00 12222222222
Q ss_pred HHHHHHhHhcCChhHHHHHHHhcccCCC-CCHHHHHHHhccc-ccHHHhHH-HHhhCcceEEcCCCeEEecHHH
Q 045618 223 YDVLKISYNEIKAEEKSLFLDIACFFNG-QDKDSVLKMIGDS-SFAHYGLN-VLVDKSLVTVSRGNQLQMHDLL 293 (349)
Q Consensus 223 ~~~l~~s~~~L~~~~~~~f~~la~fp~~-~~~~~l~~~~~~~-~~~~~~l~-~L~~~sLl~~~~~~~~~mH~lv 293 (349)
+..+...+....+..+..++-..++ +....+...++.. ......++ .|++.++|.....|+.....-+
T Consensus 254 ---~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~t~~~~ 324 (338)
T 3pfi_A 254 ---LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSY 324 (338)
T ss_dssp ---HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTEEEECHHHH
T ss_pred ---hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCcccccHHHH
Confidence 1223334555556666555544333 7788888888776 56666677 8999999998867765544433
No 20
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.30 E-value=0.00062 Score=64.43 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=60.9
Q ss_pred HHHHhCCCceEEEEecCCCch----hHHHHHcccCC-CCCCcEEEEEeCcchh---------hcccCcccEEEcCCCChH
Q 045618 89 VRERLRRTKVLIVLDDVNKVG----QLEYLIGGLER-FGPGSRIIVTTRDRRV---------LDNFGVGNIYKVNGLKYR 154 (349)
Q Consensus 89 l~~~L~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~~~~IlvTTR~~~~---------~~~~~~~~~~~l~~L~~~ 154 (349)
+...+..+..+|+||+++... ..+.+...+.. ...+..||+||.+..- ...+.....+.+++++.+
T Consensus 187 ~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e 266 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHH
T ss_pred HHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHH
Confidence 445555467899999996432 22333322210 1346788888876421 111222346889999999
Q ss_pred hHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 045618 155 EALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRV 194 (349)
Q Consensus 155 ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~ 194 (349)
+-..++.+.+.......+ .+....|++.++|.+-.+.-
T Consensus 267 ~r~~iL~~~~~~~~~~i~--~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 267 TRKSIARKMLEIEHGELP--EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHHHHHHHTCCCC--TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHH
Confidence 999999887632221111 13356778888888765443
No 21
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.21 E-value=0.0034 Score=55.06 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=62.7
Q ss_pred HhCCCceEEEEecCCCc-----------h-hHHHHHcccC---CCCCCcEEEEEeCcchhhcc--c--CcccEEEcCCCC
Q 045618 92 RLRRTKVLIVLDDVNKV-----------G-QLEYLIGGLE---RFGPGSRIIVTTRDRRVLDN--F--GVGNIYKVNGLK 152 (349)
Q Consensus 92 ~L~~~~~LlVlDdv~~~-----------~-~~~~l~~~~~---~~~~~~~IlvTTR~~~~~~~--~--~~~~~~~l~~L~ 152 (349)
....+..+|+||+++.. . ..+.+...+. .......||.||........ + .....+.+++++
T Consensus 120 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~ 199 (272)
T 1d2n_A 120 AYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIA 199 (272)
T ss_dssp HHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEE
T ss_pred HHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCcc
Confidence 34467889999998642 1 1233333222 12334456777776643322 1 124578999998
Q ss_pred h-HhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCC------chHHHHHhHHhccCCHHHHHHHHHHhhcC
Q 045618 153 Y-REALELFCNCAFKENHCPEDLLVHSKRILDYANGN------PLAVRVLGSFLRQKSKLDWESALDNLKRI 217 (349)
Q Consensus 153 ~-~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~gl------PLAl~~~a~~l~~~~~~~~~~~l~~l~~~ 217 (349)
. ++-..++.... .. . .+....+++.+.|. +-++..+-......+...+..+++.+...
T Consensus 200 ~r~~i~~i~~~~~---~~-~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 200 TGEQLLEALELLG---NF-K---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp EHHHHHHHHHHHT---CS-C---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC---CC-C---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHc
Confidence 8 55555554421 11 1 34466788888873 33333333322223345566666655444
No 22
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.15 E-value=0.00063 Score=58.11 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=56.4
Q ss_pred CceEEEEecCCCch--h--HHHHHcccCCC-CCC-cEEEEEeCcchh-h----cc----cCcccEEEcCCCChHhHHHHH
Q 045618 96 TKVLIVLDDVNKVG--Q--LEYLIGGLERF-GPG-SRIIVTTRDRRV-L----DN----FGVGNIYKVNGLKYREALELF 160 (349)
Q Consensus 96 ~~~LlVlDdv~~~~--~--~~~l~~~~~~~-~~~-~~IlvTTR~~~~-~----~~----~~~~~~~~l~~L~~~ea~~L~ 160 (349)
+..+||+||++... . .+.+...+... ..+ .++|+||+...- . .. +.....+++++++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 46789999997431 1 22232221100 112 247777764321 1 11 111257999999999999999
Q ss_pred HHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 045618 161 CNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVL 195 (349)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~ 195 (349)
...+....... ..+....+++.++|.+-.+..+
T Consensus 184 ~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 184 QRRAAMRGLQL--PEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHTTCCC--CHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHcCCCC--CHHHHHHHHHHccCCHHHHHHH
Confidence 88764322211 1355678888888887665444
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.04 E-value=0.016 Score=50.05 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=53.6
Q ss_pred CCCceEEEEecCCCc-----------------hhHHHHHcccCC--CCCCcEEEEEeCcchhhc-cc----CcccEEEcC
Q 045618 94 RRTKVLIVLDDVNKV-----------------GQLEYLIGGLER--FGPGSRIIVTTRDRRVLD-NF----GVGNIYKVN 149 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~-----------------~~~~~l~~~~~~--~~~~~~IlvTTR~~~~~~-~~----~~~~~~~l~ 149 (349)
.....+|+||+++.. ..+..++..+.. ...+..||.||....... .+ .....+.++
T Consensus 96 ~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp HTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
Confidence 345789999999753 112333332221 123556666776544221 11 123578899
Q ss_pred CCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCch
Q 045618 150 GLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 150 ~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPL 190 (349)
+++.++-.+++...+....... ........+++.+.|.+-
T Consensus 176 ~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 176 LPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCH
T ss_pred CcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCH
Confidence 9999999999988764333222 122234677777887754
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.98 E-value=0.0068 Score=53.35 Aligned_cols=98 Identities=18% Similarity=0.278 Sum_probs=55.4
Q ss_pred CCCceEEEEecCCCc----------------hhHHHHHcccC--CCCCCcEEEEEeCcchhhcc-c----CcccEEEcCC
Q 045618 94 RRTKVLIVLDDVNKV----------------GQLEYLIGGLE--RFGPGSRIIVTTRDRRVLDN-F----GVGNIYKVNG 150 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~----------------~~~~~l~~~~~--~~~~~~~IlvTTR~~~~~~~-~----~~~~~~~l~~ 150 (349)
.....+|+||+++.. ..+..++..+. ....+..||.||........ + .....+.+++
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 187 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCC
T ss_pred HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECC
Confidence 345689999999642 12223322221 11345677777765543221 1 2234789999
Q ss_pred CChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCC-chHHHH
Q 045618 151 LKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGN-PLAVRV 194 (349)
Q Consensus 151 L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~gl-PLAl~~ 194 (349)
++.++..+++...+........ .....+++.+.|. |-.|..
T Consensus 188 p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 188 PDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHHHH
Confidence 9999999999887643322111 1135677777764 434433
No 25
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.96 E-value=0.013 Score=56.55 Aligned_cols=100 Identities=13% Similarity=0.153 Sum_probs=56.5
Q ss_pred CCCceEEEEecCCCc-----hhHHHHHcccCCCCCCcEEEEEeCcch---hhcccCcccEEEcCCCChHhHHHHHHHhhc
Q 045618 94 RRTKVLIVLDDVNKV-----GQLEYLIGGLERFGPGSRIIVTTRDRR---VLDNFGVGNIYKVNGLKYREALELFCNCAF 165 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~IlvTTR~~~---~~~~~~~~~~~~l~~L~~~ea~~L~~~~a~ 165 (349)
.+++.+|++|+++.. ..+..+...+.. .+..||+++.... +.........+.+++++.++..+.+...+.
T Consensus 146 ~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 146 NGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAI 223 (516)
T ss_dssp STTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHH
Confidence 357889999999743 112333322221 2333555554322 211112345799999999999998887664
Q ss_pred cCCCCChhHHHHHHHHHHHcCC-CchHHHHHhH
Q 045618 166 KENHCPEDLLVHSKRILDYANG-NPLAVRVLGS 197 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~i~~~c~g-lPLAl~~~a~ 197 (349)
....... .+....|++.++| ++-++..+..
T Consensus 224 ~~~~~i~--~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 224 REKFKLD--PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp HHTCCCC--TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred HcCCCCC--HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3221111 1346678888988 4555555543
No 26
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.81 E-value=0.0084 Score=54.52 Aligned_cols=101 Identities=14% Similarity=0.168 Sum_probs=61.2
Q ss_pred CCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCC
Q 045618 94 RRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENH 169 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~ 169 (349)
.++.-++|||++... ...+.+...+.....++.+|++|.+.. +...+ .-...+++++++.++....+...+.....
T Consensus 132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 132 AHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp --CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 346779999999864 223444443333345677888876643 22222 22357999999999999999877633221
Q ss_pred CChhHHHHHHHHHHHcCCCchHHHHH
Q 045618 170 CPEDLLVHSKRILDYANGNPLAVRVL 195 (349)
Q Consensus 170 ~~~~~~~~~~~i~~~c~glPLAl~~~ 195 (349)
..+ .++.+..|++.++|.+-.+..+
T Consensus 212 ~~~-~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 212 QLE-TKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EEC-CSHHHHHHHHHHTTCHHHHHHH
T ss_pred CCC-cHHHHHHHHHHcCCCHHHHHHH
Confidence 111 0244667888888887654433
No 27
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.79 E-value=0.015 Score=52.64 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=63.8
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+++-++|+|+++.. +..+.|+..+.....++.+|++|.++. +...+ .-...+++++++.++..+.+.... ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~~- 182 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---TM- 182 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---CC-
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---CC-
Confidence 56788999999854 345566665555456777777776653 33332 234579999999999999888775 11
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRVL 195 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~~ 195 (349)
. .+.+..+++.++|.|..+..+
T Consensus 183 ~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 183 S---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp C---HHHHHHHHHHTTTCHHHHHHT
T ss_pred C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 244577889999999755443
No 28
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.038 Score=49.61 Aligned_cols=143 Identities=10% Similarity=0.041 Sum_probs=73.6
Q ss_pred cCCCCCchhhHHHHHHhhhhc-ceeeccccccccccCcceeehh--hhccHHHHHHHHHHHhhcccCCCCCCHH--HHHH
Q 045618 16 RATSCGIVKIRRCLMVFRLCS-TECLSEALWKPSYLNSRAIRES--RSIMNQRVSNKFLGWLVEQEQIRTPNLP--EYVR 90 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~-w~~~~~~f~~~~~~~~~~v~~~--~~~~~~~l~~~il~~l~~~~~~~~~~~~--~~l~ 90 (349)
.+|+-|.|||++++.+..... +.... ....+.++.+. .-.+...+...|+.++.|.......... +.+.
T Consensus 50 i~GpPGTGKT~~v~~v~~~L~~~~~~~------~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 50 ITNADDSTKFQLVNDVMDELITSSARK------ELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp EECCCSHHHHHHHHHHHHHHHHTTTTT------SSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhhhc------cCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 456679999999997664321 10000 00012333333 2235667788888888654322222222 1333
Q ss_pred HHh---CCCceEEEEecCCCc---hhHHHHHcccCCCCCCcEEEEEeCcchhhc-cc------Cc-ccEEEcCCCChHhH
Q 045618 91 ERL---RRTKVLIVLDDVNKV---GQLEYLIGGLERFGPGSRIIVTTRDRRVLD-NF------GV-GNIYKVNGLKYREA 156 (349)
Q Consensus 91 ~~L---~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~-~~------~~-~~~~~l~~L~~~ea 156 (349)
..+ .++.++++||.++.. +.+..+............||.++...+... .+ .. ...+.++|++.+|-
T Consensus 124 ~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el 203 (318)
T 3te6_A 124 TNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNEL 203 (318)
T ss_dssp HHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHH
T ss_pred HHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHH
Confidence 333 457899999999864 223333221101112233444443332211 11 11 24689999999999
Q ss_pred HHHHHHhh
Q 045618 157 LELFCNCA 164 (349)
Q Consensus 157 ~~L~~~~a 164 (349)
.+++..++
T Consensus 204 ~~Il~~Rl 211 (318)
T 3te6_A 204 QQMIITRL 211 (318)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
No 29
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.61 E-value=0.045 Score=51.60 Aligned_cols=102 Identities=9% Similarity=0.059 Sum_probs=59.9
Q ss_pred HhCCCceEEEEecCCCc-------------hhHHHHHcccCC---CCCCcEEEEEeCcchhhcc-c--CcccEEEcCCCC
Q 045618 92 RLRRTKVLIVLDDVNKV-------------GQLEYLIGGLER---FGPGSRIIVTTRDRRVLDN-F--GVGNIYKVNGLK 152 (349)
Q Consensus 92 ~L~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~---~~~~~~IlvTTR~~~~~~~-~--~~~~~~~l~~L~ 152 (349)
.-.....+|+||+++.. .....++..+.. ...+..||.||..+..... + .....+.++..+
T Consensus 223 a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~ 302 (444)
T 2zan_A 223 ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPE 302 (444)
T ss_dssp HHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCC
T ss_pred HHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcC
Confidence 33457789999999853 123445444432 2345666767765532211 1 234578889899
Q ss_pred hHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCC-chHHHHH
Q 045618 153 YREALELFCNCAFKENHCPEDLLVHSKRILDYANGN-PLAVRVL 195 (349)
Q Consensus 153 ~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~gl-PLAl~~~ 195 (349)
.++-..+|...+....... .......|++.+.|. +-.|..+
T Consensus 303 ~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 303 AHARAAMFRLHLGSTQNSL--TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp HHHHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999988763322111 124456788888885 4344433
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.61 E-value=0.017 Score=51.94 Aligned_cols=99 Identities=11% Similarity=0.039 Sum_probs=57.3
Q ss_pred CCceEEEEecCCCch-------------hHHHHHccc---CCCCCCcEEEEEeCcchhhcc-c--CcccEEEcCCCChHh
Q 045618 95 RTKVLIVLDDVNKVG-------------QLEYLIGGL---ERFGPGSRIIVTTRDRRVLDN-F--GVGNIYKVNGLKYRE 155 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~-------------~~~~l~~~~---~~~~~~~~IlvTTR~~~~~~~-~--~~~~~~~l~~L~~~e 155 (349)
.+..+|+||+++... ....++..+ .....+..||.||..+..... + .....+.++..+.++
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~ 188 (322)
T 3eie_A 109 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAA 188 (322)
T ss_dssp TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHH
T ss_pred cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHH
Confidence 466899999997431 123333222 222445666667766543221 1 234568899999999
Q ss_pred HHHHHHHhhccCCCCChhHHHHHHHHHHHcCCC-chHHHHH
Q 045618 156 ALELFCNCAFKENHCPEDLLVHSKRILDYANGN-PLAVRVL 195 (349)
Q Consensus 156 a~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~gl-PLAl~~~ 195 (349)
-.+++...+........ ......|++.+.|. +-.|..+
T Consensus 189 r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 189 RTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp HHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 99999988743322211 23456788888774 4344433
No 31
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.60 E-value=0.017 Score=54.52 Aligned_cols=99 Identities=13% Similarity=0.192 Sum_probs=56.3
Q ss_pred CCCceEEEEecCCCch--hHHHHHcccCCCCCCcEEEE-EeCcch--hhccc-CcccEEEcCCCChHhHHHHHHHhhccC
Q 045618 94 RRTKVLIVLDDVNKVG--QLEYLIGGLERFGPGSRIIV-TTRDRR--VLDNF-GVGNIYKVNGLKYREALELFCNCAFKE 167 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~Ilv-TTR~~~--~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~ 167 (349)
.+++.+|++|+++... ..+.|++.+.. + ...+|. ||.++. +...+ .-...+.+++++.++-..++.+.+...
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~ 181 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK 181 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCT
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHH
Confidence 4678899999998542 33444444432 2 233443 444442 11111 223478899999999999998876431
Q ss_pred C-----CCChhHHHHHHHHHHHcCCCchHHHH
Q 045618 168 N-----HCPEDLLVHSKRILDYANGNPLAVRV 194 (349)
Q Consensus 168 ~-----~~~~~~~~~~~~i~~~c~glPLAl~~ 194 (349)
. ....-..+....|++.++|.+-.+..
T Consensus 182 ~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 182 TRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp TTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred hhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 1 11111245567788888887765443
No 32
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.59 E-value=0.027 Score=50.68 Aligned_cols=101 Identities=9% Similarity=0.060 Sum_probs=57.9
Q ss_pred CCCceEEEEecCCCc-------------hhHHHHHcccC---CCCCCcEEEEEeCcchhhcc-c--CcccEEEcCCCChH
Q 045618 94 RRTKVLIVLDDVNKV-------------GQLEYLIGGLE---RFGPGSRIIVTTRDRRVLDN-F--GVGNIYKVNGLKYR 154 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~-------------~~~~~l~~~~~---~~~~~~~IlvTTR~~~~~~~-~--~~~~~~~l~~L~~~ 154 (349)
..+..+|+||+++.. .....++..+. ....+..||.||..+..... + .....+.++..+.+
T Consensus 103 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 182 (322)
T 1xwi_A 103 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPH 182 (322)
T ss_dssp HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHH
T ss_pred hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHH
Confidence 356789999999753 11223332221 12345556666655432211 1 23457889999999
Q ss_pred hHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCc-hHHHHHh
Q 045618 155 EALELFCNCAFKENHCPEDLLVHSKRILDYANGNP-LAVRVLG 196 (349)
Q Consensus 155 ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glP-LAl~~~a 196 (349)
+-.+++........... .......|++.+.|.. -.|..+.
T Consensus 183 ~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 183 ARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp HHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999988763322211 1344678888888874 3344433
No 33
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.021 Score=51.74 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=61.1
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
++.-+|++|+++.. .....+...+......+++|++|.... +...+ .-...+.+++++.++....+...+......
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 211 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVK 211 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC
Confidence 35579999999753 334444444433345667777775543 22221 112378999999999999998876332221
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHH
Q 045618 171 PEDLLVHSKRILDYANGNPLAVRV 194 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLAl~~ 194 (349)
. .++....|++.++|.|..+..
T Consensus 212 i--~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 212 C--DDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp C--CHHHHHHHHHHTSSCHHHHHH
T ss_pred C--CHHHHHHHHHHcCCCHHHHHH
Confidence 1 135677899999999876443
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.52 E-value=0.013 Score=52.04 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=45.6
Q ss_pred CceEEEEecCC-----------CchhHHHHHcccCCCCCCcEEEEEeCcchhh------ccc--CcccEEEcCCCChHhH
Q 045618 96 TKVLIVLDDVN-----------KVGQLEYLIGGLERFGPGSRIIVTTRDRRVL------DNF--GVGNIYKVNGLKYREA 156 (349)
Q Consensus 96 ~~~LlVlDdv~-----------~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~------~~~--~~~~~~~l~~L~~~ea 156 (349)
+..+|+||+++ .......|...+.....+..||.||...... ..+ .....+.+++++.++-
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEEL 209 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHH
Confidence 34699999998 3334455555554445567888888653211 111 1235799999999999
Q ss_pred HHHHHHhhc
Q 045618 157 LELFCNCAF 165 (349)
Q Consensus 157 ~~L~~~~a~ 165 (349)
..++...+.
T Consensus 210 ~~il~~~l~ 218 (309)
T 3syl_A 210 FEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987763
No 35
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.51 E-value=0.022 Score=51.11 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=52.4
Q ss_pred CCceEEEEecCCCch---hHHHHHcccCCCCCCcEEEEEeCcchh-hccc-CcccEEEcCCCChHhHHHHHH-------H
Q 045618 95 RTKVLIVLDDVNKVG---QLEYLIGGLERFGPGSRIIVTTRDRRV-LDNF-GVGNIYKVNGLKYREALELFC-------N 162 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~-~~~~-~~~~~~~l~~L~~~ea~~L~~-------~ 162 (349)
+++.++++|+++... ..+.|...+.....++.+|+||....- ...+ .-...+++++++.++-.+++. .
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~ 183 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTE 183 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 478899999999654 344444433322356778888876542 1111 112479999999887443332 2
Q ss_pred hhccCCCCChhHHHHHHHHHHHcCCCch
Q 045618 163 CAFKENHCPEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 163 ~a~~~~~~~~~~~~~~~~i~~~c~glPL 190 (349)
.+......... .+....|++.++|.+-
T Consensus 184 ~~~~~~~~~~~-~~~~~~l~~~~~gd~R 210 (324)
T 3u61_B 184 ICKHEGIAIAD-MKVVAALVKKNFPDFR 210 (324)
T ss_dssp HHHHHTCCBSC-HHHHHHHHHHTCSCTT
T ss_pred HHHHcCCCCCc-HHHHHHHHHhCCCCHH
Confidence 22111111111 2445667777777655
No 36
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.48 E-value=0.0022 Score=52.33 Aligned_cols=65 Identities=9% Similarity=0.061 Sum_probs=36.0
Q ss_pred CCCceEEEEecCCCch---------h-HHHHHcccCCCCCCcEEEEEeCcchhh------ccc-CcccEEEcCCCChHhH
Q 045618 94 RRTKVLIVLDDVNKVG---------Q-LEYLIGGLERFGPGSRIIVTTRDRRVL------DNF-GVGNIYKVNGLKYREA 156 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~~---------~-~~~l~~~~~~~~~~~~IlvTTR~~~~~------~~~-~~~~~~~l~~L~~~ea 156 (349)
.++..+|||||++... . ...+..... ..+..+|.||...... ..+ .--..+.+++++.++.
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~ 190 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDT 190 (195)
T ss_dssp STTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHH
T ss_pred cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHH
Confidence 3567899999997531 1 222222221 2345577777655421 111 1122588899988887
Q ss_pred HHHH
Q 045618 157 LELF 160 (349)
Q Consensus 157 ~~L~ 160 (349)
.+++
T Consensus 191 ~~il 194 (195)
T 1jbk_A 191 IAIL 194 (195)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 6543
No 37
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.47 E-value=0.042 Score=49.29 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=51.8
Q ss_pred CceEEEEecCCCch---h-HHHHHcccCC-CCCCcEEEEEeCcchh---------hcccCcccEEEcCCCChHhHHHHHH
Q 045618 96 TKVLIVLDDVNKVG---Q-LEYLIGGLER-FGPGSRIIVTTRDRRV---------LDNFGVGNIYKVNGLKYREALELFC 161 (349)
Q Consensus 96 ~~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~~~~IlvTTR~~~~---------~~~~~~~~~~~l~~L~~~ea~~L~~ 161 (349)
+..+|++|+++... . .+.+...+.. ...+..||+||.+... ...+.....+++++ +.++-..++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 36799999997532 1 2222222110 1245678888865421 11112225689999 9999999998
Q ss_pred HhhccCCCCChhHHHHHHHHHHHcCCCch
Q 045618 162 NCAFKENHCPEDLLVHSKRILDYANGNPL 190 (349)
Q Consensus 162 ~~a~~~~~~~~~~~~~~~~i~~~c~glPL 190 (349)
..+.......+ .+....|++.+ |.+-
T Consensus 177 ~~~~~~~~~l~--~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 177 EKLKEFNLELR--KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHTTCCCC--HHHHHHHHHHC-SSHH
T ss_pred HHHHhcCCCCC--HHHHHHHHHhC-CCHH
Confidence 87743322211 34456777777 6553
No 38
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.38 E-value=0.045 Score=49.99 Aligned_cols=101 Identities=11% Similarity=0.029 Sum_probs=57.6
Q ss_pred CCCceEEEEecCCCch-------------hHHHHHccc---CCCCCCcEEEEEeCcchhhc-cc--CcccEEEcCCCChH
Q 045618 94 RRTKVLIVLDDVNKVG-------------QLEYLIGGL---ERFGPGSRIIVTTRDRRVLD-NF--GVGNIYKVNGLKYR 154 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~~-------------~~~~l~~~~---~~~~~~~~IlvTTR~~~~~~-~~--~~~~~~~l~~L~~~ 154 (349)
..+..+|+||+++... ....++..+ .....+..||.||..+.... .+ .....+.++..+.+
T Consensus 141 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 220 (355)
T 2qp9_X 141 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLA 220 (355)
T ss_dssp HTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHH
T ss_pred HcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHH
Confidence 3567899999997432 123333222 11234556666776553211 11 23457889999999
Q ss_pred hHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCC-chHHHHHh
Q 045618 155 EALELFCNCAFKENHCPEDLLVHSKRILDYANGN-PLAVRVLG 196 (349)
Q Consensus 155 ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~gl-PLAl~~~a 196 (349)
+-.+++...+........ ......|++.+.|. |-.|..+.
T Consensus 221 ~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 221 ARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999887743321111 34466788888884 43444433
No 39
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.24 E-value=0.62 Score=41.82 Aligned_cols=136 Identities=10% Similarity=0.076 Sum_probs=80.0
Q ss_pred EEEcCCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhHHhc------cC---CHHHHHHHHHHhh
Q 045618 145 IYKVNGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPLAVRVLGSFLR------QK---SKLDWESALDNLK 215 (349)
Q Consensus 145 ~~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~a~~l~------~~---~~~~~~~~l~~l~ 215 (349)
.+.+++.+.++-.+++.+.+...... -..+.+..|++.+.|.|-.+..+-..+. +. +.+...++++.+.
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 58899999999999998876332222 2245678899999999965433322211 11 2233333333321
Q ss_pred cCCCCcHHHHHHHhHhcCChhHHHHHHHhc-ccCCC-CCHHHHHHHhccc-ccHHHhHH-HHhhCcceEEcCCCeEEecH
Q 045618 216 RISDPDIYDVLKISYNEIKAEEKSLFLDIA-CFFNG-QDKDSVLKMIGDS-SFAHYGLN-VLVDKSLVTVSRGNQLQMHD 291 (349)
Q Consensus 216 ~~~~~~l~~~l~~s~~~L~~~~~~~f~~la-~fp~~-~~~~~l~~~~~~~-~~~~~~l~-~L~~~sLl~~~~~~~~~mH~ 291 (349)
. .-..++...+..+..++ .|.++ ...+.+......+ ...+...+ .|...+|++....|++....
T Consensus 252 ~------------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g~i~~~~~gr~~~~~ 319 (334)
T 1in4_A 252 I------------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTEK 319 (334)
T ss_dssp C------------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHH
T ss_pred C------------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHcCCeecccccHHhhHH
Confidence 1 11245555445544333 34333 7777777777665 44444444 89999999999888876554
Q ss_pred HHH
Q 045618 292 LLQ 294 (349)
Q Consensus 292 lv~ 294 (349)
-.+
T Consensus 320 ~~~ 322 (334)
T 1in4_A 320 AYK 322 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 40
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.24 E-value=0.077 Score=48.40 Aligned_cols=100 Identities=11% Similarity=0.089 Sum_probs=55.8
Q ss_pred CCceEEEEecCCCc-------------hhHHHHHcccC----CCCCCcEEEEEeCcchhhc-cc--CcccEEEcCCCChH
Q 045618 95 RTKVLIVLDDVNKV-------------GQLEYLIGGLE----RFGPGSRIIVTTRDRRVLD-NF--GVGNIYKVNGLKYR 154 (349)
Q Consensus 95 ~~~~LlVlDdv~~~-------------~~~~~l~~~~~----~~~~~~~IlvTTR~~~~~~-~~--~~~~~~~l~~L~~~ 154 (349)
.+..+|+||+++.. .....++..+. ....+..||.||....... .+ .....+.++..+.+
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~ 254 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEAS 254 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHH
Confidence 46789999999532 11223332221 1123455666675543211 11 23346889999999
Q ss_pred hHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCC-chHHHHHh
Q 045618 155 EALELFCNCAFKENHCPEDLLVHSKRILDYANGN-PLAVRVLG 196 (349)
Q Consensus 155 ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~gl-PLAl~~~a 196 (349)
+..+++...+....... .......|++.+.|. |-.|..+.
T Consensus 255 ~r~~il~~~~~~~~~~l--~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 255 ARKQIVINLMSKEQCCL--SEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHHHHHHHHHHTSCBCC--CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCc--cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99998887763322111 134567788888884 44555443
No 41
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.22 E-value=0.036 Score=50.53 Aligned_cols=94 Identities=10% Similarity=-0.011 Sum_probs=53.4
Q ss_pred ceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCc------------c-hhhccc-CcccEEEcCCCChHhHHHHH
Q 045618 97 KVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRD------------R-RVLDNF-GVGNIYKVNGLKYREALELF 160 (349)
Q Consensus 97 ~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~------------~-~~~~~~-~~~~~~~l~~L~~~ea~~L~ 160 (349)
+.+|+||+++.. .....+...+...... .++++|.. . .+...+ .-...+.+++++.++..+++
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 268 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQIL 268 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHH
Confidence 359999999854 3344454444332223 44444431 1 011111 11235899999999999999
Q ss_pred HHhhccCCCCChhHHHHHHHHHHHcC-CCchHHH
Q 045618 161 CNCAFKENHCPEDLLVHSKRILDYAN-GNPLAVR 193 (349)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~i~~~c~-glPLAl~ 193 (349)
...+....... ..+....|++.+. |.|-.+.
T Consensus 269 ~~~~~~~~~~~--~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 269 RIRCEEEDVEM--SEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHTTCCB--CHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHcCCCC--CHHHHHHHHHHhcCCCHHHHH
Confidence 98764332221 1345667888886 6665443
No 42
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.11 E-value=0.063 Score=49.57 Aligned_cols=99 Identities=13% Similarity=0.047 Sum_probs=54.3
Q ss_pred CCceEEEEecCCCc-------------hhHHHHHccc---CC-CCCCcEEEEEeCcchhhc-cc--CcccEEEcCCCChH
Q 045618 95 RTKVLIVLDDVNKV-------------GQLEYLIGGL---ER-FGPGSRIIVTTRDRRVLD-NF--GVGNIYKVNGLKYR 154 (349)
Q Consensus 95 ~~~~LlVlDdv~~~-------------~~~~~l~~~~---~~-~~~~~~IlvTTR~~~~~~-~~--~~~~~~~l~~L~~~ 154 (349)
....+|+||+++.. .....++..+ .. ......||.||....... .+ .....+.++..+.+
T Consensus 206 ~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~ 285 (389)
T 3vfd_A 206 LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEE 285 (389)
T ss_dssp SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHH
Confidence 35579999999643 1112222211 11 123455666665543221 11 23346889999999
Q ss_pred hHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCch-HHHHH
Q 045618 155 EALELFCNCAFKENHCPEDLLVHSKRILDYANGNPL-AVRVL 195 (349)
Q Consensus 155 ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPL-Al~~~ 195 (349)
+-.+++...+........ ......|++.+.|..- +|..+
T Consensus 286 ~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 286 TRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp HHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 999999887633322221 2456788888888654 44443
No 43
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.07 E-value=0.089 Score=46.68 Aligned_cols=101 Identities=11% Similarity=0.139 Sum_probs=56.9
Q ss_pred HHHHHHhCCCceEEEEecCCCch----------------hHHHHHcccCC--CCCCcEEEEEeCcchhhcc--c---Ccc
Q 045618 87 EYVRERLRRTKVLIVLDDVNKVG----------------QLEYLIGGLER--FGPGSRIIVTTRDRRVLDN--F---GVG 143 (349)
Q Consensus 87 ~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~~~~IlvTTR~~~~~~~--~---~~~ 143 (349)
..+.........+|+||+++... ....++..+.. ...+..||.||..++.... . ...
T Consensus 99 ~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~ 178 (301)
T 3cf0_A 99 EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLD 178 (301)
T ss_dssp HHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSC
T ss_pred HHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccc
Confidence 33444444567999999997321 12333332211 1235677777766543221 1 133
Q ss_pred cEEEcCCCChHhHHHHHHHhhccCCC-CChhHHHHHHHHHHHcCCCchH
Q 045618 144 NIYKVNGLKYREALELFCNCAFKENH-CPEDLLVHSKRILDYANGNPLA 191 (349)
Q Consensus 144 ~~~~l~~L~~~ea~~L~~~~a~~~~~-~~~~~~~~~~~i~~~c~glPLA 191 (349)
..+.++..+.++-.+++......... .... ...+++.+.|.|-+
T Consensus 179 ~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 179 QLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred eEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 57899999999988988877633221 1112 23566667777643
No 44
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.77 E-value=0.17 Score=44.52 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=54.8
Q ss_pred CCCceEEEEecCCCc-------------hhHHHHHcc---cCC--CCCCcEEEEEeCcchhhcc-c--CcccEEEcCCCC
Q 045618 94 RRTKVLIVLDDVNKV-------------GQLEYLIGG---LER--FGPGSRIIVTTRDRRVLDN-F--GVGNIYKVNGLK 152 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~-------------~~~~~l~~~---~~~--~~~~~~IlvTTR~~~~~~~-~--~~~~~~~l~~L~ 152 (349)
.....+|+||+++.. .....++.. +.. .+.+..||.||..+..... + .....+.++..+
T Consensus 111 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~ 190 (297)
T 3b9p_A 111 HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPD 190 (297)
T ss_dssp HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCC
T ss_pred HcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcC
Confidence 346789999999642 111122211 111 1234567777776532211 1 123467888888
Q ss_pred hHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCch-HHHHH
Q 045618 153 YREALELFCNCAFKENHCPEDLLVHSKRILDYANGNPL-AVRVL 195 (349)
Q Consensus 153 ~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glPL-Al~~~ 195 (349)
.++-..++...+........ ......+++.+.|.+- ++..+
T Consensus 191 ~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 191 EQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp HHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 88888888776633222111 2456678888888875 44433
No 45
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.52 E-value=0.11 Score=46.82 Aligned_cols=95 Identities=16% Similarity=0.196 Sum_probs=56.1
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch-hhccc-CcccEEEcCCCChHhHHHHHHHhhccCCCC
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR-VLDNF-GVGNIYKVNGLKYREALELFCNCAFKENHC 170 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~a~~~~~~ 170 (349)
+.+-++|+|+++.. ...+.+...+......+.+|++|.... +...+ .-...+.+.+++.++..+.+...+-.....
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLK 188 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCC
Confidence 34678999999743 333444433333345667777775543 21111 123478899999999888887765222211
Q ss_pred ChhHHHHHHHHHHHcCCCchH
Q 045618 171 PEDLLVHSKRILDYANGNPLA 191 (349)
Q Consensus 171 ~~~~~~~~~~i~~~c~glPLA 191 (349)
.. ......+++.++|.+--
T Consensus 189 i~--~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 189 LS--PNAEKALIELSNGDMRR 207 (340)
T ss_dssp BC--HHHHHHHHHHHTTCHHH
T ss_pred CC--HHHHHHHHHHcCCCHHH
Confidence 11 34566788888887753
No 46
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.62 E-value=0.12 Score=46.12 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=48.9
Q ss_pred CCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc-hhhcccCcccEEEcCCCChHhHHHHHHHhh
Q 045618 95 RTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR-RVLDNFGVGNIYKVNGLKYREALELFCNCA 164 (349)
Q Consensus 95 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~-~~~~~~~~~~~~~l~~L~~~ea~~L~~~~a 164 (349)
+++-++|+|+++.. ...+.|+..+....+.+.+|++|.++ .+...+..- .++++++++++..+.+.+..
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 45778999999854 44566666665445677777776554 344444344 89999999999999888775
No 47
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.47 E-value=0.071 Score=43.20 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=14.2
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+.|.|||+|++....
T Consensus 43 l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 43 FVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp ECCSSSSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 567789999999985543
No 48
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.16 E-value=0.046 Score=47.42 Aligned_cols=71 Identities=15% Similarity=0.368 Sum_probs=40.6
Q ss_pred CCCceEEEEecCCCch-----------------hHHHHHcccCCC---CCCcEEEEEeCcchhhc-cc----CcccEEEc
Q 045618 94 RRTKVLIVLDDVNKVG-----------------QLEYLIGGLERF---GPGSRIIVTTRDRRVLD-NF----GVGNIYKV 148 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~~---~~~~~IlvTTR~~~~~~-~~----~~~~~~~l 148 (349)
.....+|+||+++... .+..++..+... .....||.||....... .. .....+.+
T Consensus 101 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i 180 (268)
T 2r62_A 101 KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLV 180 (268)
T ss_dssp HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBC
T ss_pred hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEe
Confidence 3466899999996431 122333332211 12345666776554221 11 12346788
Q ss_pred CCCChHhHHHHHHHhh
Q 045618 149 NGLKYREALELFCNCA 164 (349)
Q Consensus 149 ~~L~~~ea~~L~~~~a 164 (349)
++++.++-.+++...+
T Consensus 181 ~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 181 DKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCCCTTTHHHHHHHHT
T ss_pred cCcCHHHHHHHHHHHH
Confidence 8888888888887765
No 49
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.74 E-value=0.1 Score=43.02 Aligned_cols=18 Identities=17% Similarity=0.002 Sum_probs=14.1
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+.|.|||++|.....
T Consensus 59 l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 59 LHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 457789999999985544
No 50
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.23 Score=45.91 Aligned_cols=92 Identities=15% Similarity=0.235 Sum_probs=55.3
Q ss_pred CCCceEEEEecCCCc------------h----hHHHHHcccC--CCCCCcEEEEEeCcchhhcc-c----CcccEEEcCC
Q 045618 94 RRTKVLIVLDDVNKV------------G----QLEYLIGGLE--RFGPGSRIIVTTRDRRVLDN-F----GVGNIYKVNG 150 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~------------~----~~~~l~~~~~--~~~~~~~IlvTTR~~~~~~~-~----~~~~~~~l~~ 150 (349)
....++|.+|+++.. . .+..++..+. ....+..||.||..++.... + .....+.++.
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~l 318 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPP 318 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCC
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCC
Confidence 456899999999732 0 1233333332 12345567777776654322 1 2356899999
Q ss_pred CChHhHHHHHHHhhccCCC-CChhHHHHHHHHHHHcCCCc
Q 045618 151 LKYREALELFCNCAFKENH-CPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 151 L~~~ea~~L~~~~a~~~~~-~~~~~~~~~~~i~~~c~glP 189 (349)
.+.++-.++|+.+.-.... ...+ ...|++.+.|.-
T Consensus 319 Pd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 319 PSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 9999999999877633221 1222 346777887764
No 51
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.94 E-value=0.1 Score=41.99 Aligned_cols=18 Identities=11% Similarity=-0.188 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+.|+|||++|+....
T Consensus 48 l~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 48 LLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp EESCGGGCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 346679999999985543
No 52
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.88 E-value=0.45 Score=40.80 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=40.5
Q ss_pred hCCCceEEEEecCCCc----------------hhHHHHHcccCC--CCCCcEEEEEeCcchhh-ccc----CcccEEEcC
Q 045618 93 LRRTKVLIVLDDVNKV----------------GQLEYLIGGLER--FGPGSRIIVTTRDRRVL-DNF----GVGNIYKVN 149 (349)
Q Consensus 93 L~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~--~~~~~~IlvTTR~~~~~-~~~----~~~~~~~l~ 149 (349)
......++++|+++.. ..+..++..+.. ...+..||.||...... ..+ .....+.++
T Consensus 101 ~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~ 180 (257)
T 1lv7_A 101 KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 180 (257)
T ss_dssp HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECC
T ss_pred HHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeC
Confidence 3455689999998311 122333322211 12345677777655422 111 123478888
Q ss_pred CCChHhHHHHHHHhh
Q 045618 150 GLKYREALELFCNCA 164 (349)
Q Consensus 150 ~L~~~ea~~L~~~~a 164 (349)
..+.++-.+++....
T Consensus 181 ~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 181 LPDVRGREQILKVHM 195 (257)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 888888888887765
No 53
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.70 E-value=0.3 Score=43.07 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=14.1
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|.|||++|+....
T Consensus 52 l~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 52 FLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EESCSSSSHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHH
Confidence 557789999999985544
No 54
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.68 E-value=0.17 Score=48.23 Aligned_cols=97 Identities=9% Similarity=0.136 Sum_probs=52.4
Q ss_pred HHHHhCCCceEEEEecCCCc-------------hhHHHHHcccC--CCCCCcEEEEEeCcchh-hccc----CcccEEEc
Q 045618 89 VRERLRRTKVLIVLDDVNKV-------------GQLEYLIGGLE--RFGPGSRIIVTTRDRRV-LDNF----GVGNIYKV 148 (349)
Q Consensus 89 l~~~L~~~~~LlVlDdv~~~-------------~~~~~l~~~~~--~~~~~~~IlvTTR~~~~-~~~~----~~~~~~~l 148 (349)
+.....++..+|+||+++.. .....|+..+. ....+..||.||..... ...+ .....+.+
T Consensus 290 f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i 369 (489)
T 3hu3_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369 (489)
T ss_dssp HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEEC
T ss_pred HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEe
Confidence 33444556789999999411 11222322221 11334566666665532 1111 23347899
Q ss_pred CCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCC
Q 045618 149 NGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGN 188 (349)
Q Consensus 149 ~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~gl 188 (349)
+..+.++-.++|...+........ ....++++.+.|.
T Consensus 370 ~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~ 406 (489)
T 3hu3_A 370 GIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGH 406 (489)
T ss_dssp CCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTC
T ss_pred CCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCC
Confidence 999999999999887633221111 1124566666664
No 55
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.44 E-value=1 Score=39.44 Aligned_cols=20 Identities=5% Similarity=-0.013 Sum_probs=16.7
Q ss_pred cEEEcCCCChHhHHHHHHHh
Q 045618 144 NIYKVNGLKYREALELFCNC 163 (349)
Q Consensus 144 ~~~~l~~L~~~ea~~L~~~~ 163 (349)
..+.+++++.++-.+++...
T Consensus 195 ~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 195 IRVELTALSAADFERILTEP 214 (310)
T ss_dssp EEEECCCCCHHHHHHHHHSS
T ss_pred ceEEcCCcCHHHHHHHHHhh
Confidence 46999999999988888753
No 56
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.36 E-value=1.1 Score=42.41 Aligned_cols=98 Identities=11% Similarity=0.134 Sum_probs=55.1
Q ss_pred HHHHhCCCceEEEEecCCCc----------------hhHHHHHcccCC--CCCCcEEEEEeCcchhhcc--cC---cccE
Q 045618 89 VRERLRRTKVLIVLDDVNKV----------------GQLEYLIGGLER--FGPGSRIIVTTRDRRVLDN--FG---VGNI 145 (349)
Q Consensus 89 l~~~L~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~--~~~~~~IlvTTR~~~~~~~--~~---~~~~ 145 (349)
+........++|+||+++.. ..+..++..+.. ...+..||.||..++.... .. ....
T Consensus 101 f~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~ 180 (476)
T 2ce7_A 101 FAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKK 180 (476)
T ss_dssp HHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEE
T ss_pred HHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeE
Confidence 34444567899999999532 123333332211 1235667777776654321 11 2347
Q ss_pred EEcCCCChHhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCc
Q 045618 146 YKVNGLKYREALELFCNCAFKENHCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 146 ~~l~~L~~~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glP 189 (349)
+.++..+.++-.+++..++......... ....+++.+.|..
T Consensus 181 i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 181 IVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred eecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 8889888888888887766332211111 1334777788876
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.35 E-value=0.31 Score=49.06 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=40.3
Q ss_pred CCceEEEEecCCCc----------hhHHHHHcccCCCCCCcEEEEEeCcchhhcc------c-CcccEEEcCCCChHhHH
Q 045618 95 RTKVLIVLDDVNKV----------GQLEYLIGGLERFGPGSRIIVTTRDRRVLDN------F-GVGNIYKVNGLKYREAL 157 (349)
Q Consensus 95 ~~~~LlVlDdv~~~----------~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~------~-~~~~~~~l~~L~~~ea~ 157 (349)
.++.+|++|+++.. .+...++..+.. ..+..+|.+|........ + .--..+.+++++.++..
T Consensus 277 ~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~ 355 (758)
T 1r6b_X 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETV 355 (758)
T ss_dssp SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHH
T ss_pred cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHH
Confidence 35789999999744 222333333222 234566666654432111 1 11136889999999998
Q ss_pred HHHHHhh
Q 045618 158 ELFCNCA 164 (349)
Q Consensus 158 ~L~~~~a 164 (349)
+++....
T Consensus 356 ~il~~l~ 362 (758)
T 1r6b_X 356 QIINGLK 362 (758)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 58
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.04 E-value=0.44 Score=41.96 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=23.1
Q ss_pred CCcEEEEEeCcchhhcc-c----CcccEEEcCCCChHhHHHHHHHhhc
Q 045618 123 PGSRIIVTTRDRRVLDN-F----GVGNIYKVNGLKYREALELFCNCAF 165 (349)
Q Consensus 123 ~~~~IlvTTR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~a~ 165 (349)
.+..||.||...+.... + .....+.++ +.++-.+++.....
T Consensus 154 ~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~P--~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 154 ARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP--TREDRIGVCTGIFR 199 (293)
T ss_dssp CCCCEEEECSSCCC--CHHHHHHHEEEEEECC--CHHHHHHHHHHHHG
T ss_pred CCcEEEEecCCcccCCHHHhCCCCCceeEeCc--CHHHHHHHHHHhcc
Confidence 45678888876542211 1 112234443 88888888887663
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.99 E-value=0.71 Score=43.62 Aligned_cols=75 Identities=11% Similarity=0.066 Sum_probs=40.0
Q ss_pred HHHHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchh------hccc-CcccEEEcCCCChHhHHH
Q 045618 86 PEYVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRV------LDNF-GVGNIYKVNGLKYREALE 158 (349)
Q Consensus 86 ~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~------~~~~-~~~~~~~l~~L~~~ea~~ 158 (349)
...+...-..++.+|++| ...+....|.+.+. ....++|.+|..... ...+ .--..+.+++++.++..+
T Consensus 257 ~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~ 332 (468)
T 3pxg_A 257 KKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQ 332 (468)
T ss_dssp HHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHH
Confidence 333444444677899999 22233344545443 224556655554431 1111 112369999999999999
Q ss_pred HHHHhh
Q 045618 159 LFCNCA 164 (349)
Q Consensus 159 L~~~~a 164 (349)
++....
T Consensus 333 iL~~~~ 338 (468)
T 3pxg_A 333 ILQGLR 338 (468)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 998765
No 60
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.32 E-value=0.44 Score=46.01 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=38.2
Q ss_pred CceEEEEecCCCchh------HHHHHcccCCCC---------------CCcEEEEEeCcchhhc-cc-CcccEEEcCCCC
Q 045618 96 TKVLIVLDDVNKVGQ------LEYLIGGLERFG---------------PGSRIIVTTRDRRVLD-NF-GVGNIYKVNGLK 152 (349)
Q Consensus 96 ~~~LlVlDdv~~~~~------~~~l~~~~~~~~---------------~~~~IlvTTR~~~~~~-~~-~~~~~~~l~~L~ 152 (349)
..-+++||.++.... ...++..+.... ....||.||....... .+ .-...+.+++++
T Consensus 175 ~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~ 254 (543)
T 3m6a_A 175 LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYT 254 (543)
T ss_dssp SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCC
T ss_pred cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCC
Confidence 344888999975421 233333332111 2345666665543221 11 112368999999
Q ss_pred hHhHHHHHHHhh
Q 045618 153 YREALELFCNCA 164 (349)
Q Consensus 153 ~~ea~~L~~~~a 164 (349)
.++-.+++..+.
T Consensus 255 ~~e~~~Il~~~l 266 (543)
T 3m6a_A 255 EIEKLEIVKDHL 266 (543)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHHHHHHHHHHH
Confidence 999988888765
No 61
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.30 E-value=0.94 Score=42.55 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=53.1
Q ss_pred CCCceEEEEecCCCch----------------hHHHHHcccC--CCCCCcEEEEEeCcchhhcc-c----CcccEEEcCC
Q 045618 94 RRTKVLIVLDDVNKVG----------------QLEYLIGGLE--RFGPGSRIIVTTRDRRVLDN-F----GVGNIYKVNG 150 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~~~~IlvTTR~~~~~~~-~----~~~~~~~l~~ 150 (349)
....++|.+|+++... ....++..+. ....+..||.||..++.... + .....+.++.
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~l 379 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL 379 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCC
T ss_pred hcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCC
Confidence 4568999999996320 1222333221 11234456667765543321 1 2456788999
Q ss_pred CChHhHHHHHHHhhccCCC-CChhHHHHHHHHHHHcCCCc
Q 045618 151 LKYREALELFCNCAFKENH-CPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 151 L~~~ea~~L~~~~a~~~~~-~~~~~~~~~~~i~~~c~glP 189 (349)
.+.++-.++|+.++..... .... ...|++.+.|.-
T Consensus 380 Pd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 380 PDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 9999999999877633221 1122 346778888764
No 62
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.00 E-value=3.7 Score=38.31 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=54.5
Q ss_pred CCCceEEEEecCCCc------------h----hHHHHHcccC--CCCCCcEEEEEeCcchhhccc--C---cccEEEcCC
Q 045618 94 RRTKVLIVLDDVNKV------------G----QLEYLIGGLE--RFGPGSRIIVTTRDRRVLDNF--G---VGNIYKVNG 150 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~------------~----~~~~l~~~~~--~~~~~~~IlvTTR~~~~~~~~--~---~~~~~~l~~ 150 (349)
....++|.+|+++.. . .+..|+..+. ....+..||.||..++..... . ....+.++.
T Consensus 272 ~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~l 351 (437)
T 4b4t_L 272 EHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPL 351 (437)
T ss_dssp HSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCC
T ss_pred hcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCC
Confidence 357899999999631 0 1233433332 123456778888766543321 1 244788888
Q ss_pred CChHhHHHHHHHhhccCC-CCChhHHHHHHHHHHHcCCCc
Q 045618 151 LKYREALELFCNCAFKEN-HCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 151 L~~~ea~~L~~~~a~~~~-~~~~~~~~~~~~i~~~c~glP 189 (349)
.+.++-.++|+.+..... ..... ...|++.+.|.-
T Consensus 352 Pd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 352 PNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 898888899987763322 11222 346677777754
No 63
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.23 E-value=0.42 Score=48.90 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=35.3
Q ss_pred CCceEEEEecCCCch---------h-HHHHHcccCCCCCCcEEEEEeCcchh-----hccc-CcccEEEcCCCChHhHHH
Q 045618 95 RTKVLIVLDDVNKVG---------Q-LEYLIGGLERFGPGSRIIVTTRDRRV-----LDNF-GVGNIYKVNGLKYREALE 158 (349)
Q Consensus 95 ~~~~LlVlDdv~~~~---------~-~~~l~~~~~~~~~~~~IlvTTR~~~~-----~~~~-~~~~~~~l~~L~~~ea~~ 158 (349)
+++.+|++|+++... + ...+.+.+. ..+..+|.+|..... ...+ .-...+.+++++.++..+
T Consensus 262 ~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~ 339 (854)
T 1qvr_A 262 QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETIS 339 (854)
T ss_dssp CSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHH
T ss_pred CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHH
Confidence 367899999997532 1 122323222 123445555543321 1111 112358999999999999
Q ss_pred HHHHhh
Q 045618 159 LFCNCA 164 (349)
Q Consensus 159 L~~~~a 164 (349)
++....
T Consensus 340 iL~~~~ 345 (854)
T 1qvr_A 340 ILRGLK 345 (854)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 987543
No 64
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.07 E-value=0.14 Score=40.37 Aligned_cols=18 Identities=11% Similarity=-0.258 Sum_probs=14.0
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+.|.|||+|++....
T Consensus 41 l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 41 VWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EESSSTTTTCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 567789999999985544
No 65
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.78 E-value=2.3 Score=39.61 Aligned_cols=91 Identities=11% Similarity=0.150 Sum_probs=52.3
Q ss_pred CCceEEEEecCCCc------------h----hHHHHHcccCCC--CCCcEEEEEeCcchhhcc-c----CcccEEEcCCC
Q 045618 95 RTKVLIVLDDVNKV------------G----QLEYLIGGLERF--GPGSRIIVTTRDRRVLDN-F----GVGNIYKVNGL 151 (349)
Q Consensus 95 ~~~~LlVlDdv~~~------------~----~~~~l~~~~~~~--~~~~~IlvTTR~~~~~~~-~----~~~~~~~l~~L 151 (349)
...++|.+|+++.. . .+..++..+... ..+..||.||..++.... + .....+.++..
T Consensus 273 ~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lP 352 (434)
T 4b4t_M 273 KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLP 352 (434)
T ss_dssp HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCC
T ss_pred cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCc
Confidence 35799999999521 0 122343333222 234456667766654332 1 13457889999
Q ss_pred ChHhHHHHHHHhhccCCC-CChhHHHHHHHHHHHcCCCc
Q 045618 152 KYREALELFCNCAFKENH-CPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 152 ~~~ea~~L~~~~a~~~~~-~~~~~~~~~~~i~~~c~glP 189 (349)
+.++-.++|+.+...... .... ...|++.+.|.-
T Consensus 353 d~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 353 SEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp CHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 999888998876633221 1112 346777787753
No 66
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.42 E-value=0.84 Score=42.57 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=48.4
Q ss_pred CCCceEEEEecCCC------------ch----hHHHHHcccC--CCCCCcEEEEEeCcchhhcc-c-C---cccEEEcCC
Q 045618 94 RRTKVLIVLDDVNK------------VG----QLEYLIGGLE--RFGPGSRIIVTTRDRRVLDN-F-G---VGNIYKVNG 150 (349)
Q Consensus 94 ~~~~~LlVlDdv~~------------~~----~~~~l~~~~~--~~~~~~~IlvTTR~~~~~~~-~-~---~~~~~~l~~ 150 (349)
....+++.+|+++. .. .+..|+..+. ....+..||.||..++.... + . ....++++.
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~ 342 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPS 342 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCS
T ss_pred HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCC
Confidence 45689999999941 01 1333333222 12345667778876654322 1 1 234677765
Q ss_pred C-ChHhHHHHHHHhhccCC-CCChhHHHHHHHHHHHcCCCc
Q 045618 151 L-KYREALELFCNCAFKEN-HCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 151 L-~~~ea~~L~~~~a~~~~-~~~~~~~~~~~~i~~~c~glP 189 (349)
+ +.++-..+|..+..... .+... ...|++.+.|.-
T Consensus 343 lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 343 LRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 5 45555667766653322 11222 346777777753
No 67
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.32 E-value=0.71 Score=35.76 Aligned_cols=37 Identities=16% Similarity=0.008 Sum_probs=22.0
Q ss_pred eEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcc
Q 045618 98 VLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDR 134 (349)
Q Consensus 98 ~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~ 134 (349)
..|+||+++.. .....+...+.......++|.||...
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 56899999854 23334444333334466787777653
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.28 E-value=0.84 Score=39.22 Aligned_cols=18 Identities=11% Similarity=-0.202 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|.|||++|+....
T Consensus 34 l~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 34 IIGERGTGKELIASRLHY 51 (265)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHH
Confidence 345579999999986543
No 69
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.21 E-value=1.2 Score=39.50 Aligned_cols=18 Identities=11% Similarity=-0.108 Sum_probs=13.8
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|.|||++|+....
T Consensus 30 i~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 30 IHGDSGTGKELVARALHA 47 (304)
T ss_dssp EESCTTSCHHHHHHHHHH
T ss_pred EECCCCchHHHHHHHHHH
Confidence 346679999999986554
No 70
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.20 E-value=1.2 Score=41.33 Aligned_cols=92 Identities=10% Similarity=0.134 Sum_probs=53.1
Q ss_pred CCCceEEEEecCCCc----------------hhHHHHHcccC--CCCCCcEEEEEeCcchhhccc--C---cccEEEcCC
Q 045618 94 RRTKVLIVLDDVNKV----------------GQLEYLIGGLE--RFGPGSRIIVTTRDRRVLDNF--G---VGNIYKVNG 150 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~----------------~~~~~l~~~~~--~~~~~~~IlvTTR~~~~~~~~--~---~~~~~~l~~ 150 (349)
....++|.+|+++.. ..+..++..+. ....+..||.||..++..... . ....+.++.
T Consensus 273 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~l 352 (437)
T 4b4t_I 273 ENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFEN 352 (437)
T ss_dssp HTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCC
T ss_pred hcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCC
Confidence 346799999998621 11223333221 123455677777766543321 1 234688888
Q ss_pred CChHhHHHHHHHhhccCCC-CChhHHHHHHHHHHHcCCCc
Q 045618 151 LKYREALELFCNCAFKENH-CPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 151 L~~~ea~~L~~~~a~~~~~-~~~~~~~~~~~i~~~c~glP 189 (349)
.+.++-.++|..+...... .... ...|++.+.|.-
T Consensus 353 Pd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 353 PDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 8988889999877633221 1222 346777777753
No 71
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.14 E-value=1.1 Score=45.13 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=37.8
Q ss_pred CceEEEEecCCCc--hhHHHHHcccCC-----------CCCCcEEEEEeCcch-----------------hhcccCcccE
Q 045618 96 TKVLIVLDDVNKV--GQLEYLIGGLER-----------FGPGSRIIVTTRDRR-----------------VLDNFGVGNI 145 (349)
Q Consensus 96 ~~~LlVlDdv~~~--~~~~~l~~~~~~-----------~~~~~~IlvTTR~~~-----------------~~~~~~~~~~ 145 (349)
...+|+||+++.. .....|...+.. ...++.||.||.... .... ....
T Consensus 579 ~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~R--l~~~ 656 (758)
T 3pxi_A 579 PYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINR--IDEI 656 (758)
T ss_dssp SSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTT--SSEE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhh--CCeE
Confidence 3458999999743 333444332211 123568888887311 1111 2247
Q ss_pred EEcCCCChHhHHHHHHHhh
Q 045618 146 YKVNGLKYREALELFCNCA 164 (349)
Q Consensus 146 ~~l~~L~~~ea~~L~~~~a 164 (349)
+.+++++.++-.+++....
T Consensus 657 i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 657 IVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EECC--CHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHH
Confidence 8899999988887776654
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.75 E-value=1.6 Score=43.95 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchh------hccc-CcccEEEcCCCChHhHH
Q 045618 85 LPEYVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRV------LDNF-GVGNIYKVNGLKYREAL 157 (349)
Q Consensus 85 ~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~------~~~~-~~~~~~~l~~L~~~ea~ 157 (349)
+...+......++.+|++| ...+....+.+.+. ....++|.||..... ...+ .--..+.+++++.++..
T Consensus 256 l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~ 331 (758)
T 3pxi_A 256 LKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESI 331 (758)
T ss_dssp HHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHH
Confidence 3444444555678999999 22223334444443 234566666654441 1111 11146999999999999
Q ss_pred HHHHHhh
Q 045618 158 ELFCNCA 164 (349)
Q Consensus 158 ~L~~~~a 164 (349)
+++....
T Consensus 332 ~il~~~~ 338 (758)
T 3pxi_A 332 QILQGLR 338 (758)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9998655
No 73
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=86.81 E-value=4.7 Score=38.29 Aligned_cols=90 Identities=12% Similarity=0.208 Sum_probs=49.0
Q ss_pred ceEEEEecCCCc----------------hhHHHHHcccCCC--CCCcEEEEEeCcchhhcc-c----CcccEEEcCCCCh
Q 045618 97 KVLIVLDDVNKV----------------GQLEYLIGGLERF--GPGSRIIVTTRDRRVLDN-F----GVGNIYKVNGLKY 153 (349)
Q Consensus 97 ~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~~~~IlvTTR~~~~~~~-~----~~~~~~~l~~L~~ 153 (349)
.+++++|+++.. ..+..++..+... .....|+.||..++.... + .....+.++..+.
T Consensus 124 p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~ 203 (499)
T 2dhr_A 124 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 203 (499)
T ss_dssp SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCH
T ss_pred CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCH
Confidence 489999999521 1123443333211 223456666666654321 1 1334788999999
Q ss_pred HhHHHHHHHhhccCCCCChhHHHHHHHHHHHcCCCc
Q 045618 154 REALELFCNCAFKENHCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 154 ~ea~~L~~~~a~~~~~~~~~~~~~~~~i~~~c~glP 189 (349)
++-.+++..++-....... .....|++.+.|..
T Consensus 204 ~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 204 KGREQILRIHARGKPLAED---VDLALLAKRTPGFV 236 (499)
T ss_dssp HHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCC
T ss_pred HHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCC
Confidence 9888888877632221111 11234566666655
No 74
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=86.57 E-value=3.8 Score=35.52 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=42.7
Q ss_pred CCceEEEEecCCCc-------------hhHHHHHcccCC--CCCCcEEEEEeCcchhhccc-----CcccEEEcCCCChH
Q 045618 95 RTKVLIVLDDVNKV-------------GQLEYLIGGLER--FGPGSRIIVTTRDRRVLDNF-----GVGNIYKVNGLKYR 154 (349)
Q Consensus 95 ~~~~LlVlDdv~~~-------------~~~~~l~~~~~~--~~~~~~IlvTTR~~~~~~~~-----~~~~~~~l~~L~~~ 154 (349)
...+++++|+++.. .....+...+.. ......++.+|..+++.... .....+.++..+.+
T Consensus 102 ~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~ 181 (274)
T 2x8a_A 102 SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181 (274)
T ss_dssp TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHH
T ss_pred cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHH
Confidence 35688999999642 112233322221 12345566777777654321 23457889999999
Q ss_pred hHHHHHHHhh
Q 045618 155 EALELFCNCA 164 (349)
Q Consensus 155 ea~~L~~~~a 164 (349)
+-.++|+...
T Consensus 182 ~r~~il~~~~ 191 (274)
T 2x8a_A 182 DRLAILKTIT 191 (274)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 75
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.96 E-value=0.66 Score=35.91 Aligned_cols=17 Identities=6% Similarity=-0.080 Sum_probs=12.8
Q ss_pred CCCCCchhhHHHHHHhh
Q 045618 17 ATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 17 ~~~gGiGKT~la~~~f~ 33 (349)
.|+-|.|||++|+....
T Consensus 33 ~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 33 TGEAGSPFETVARYFHK 49 (143)
T ss_dssp EEETTCCHHHHHGGGCC
T ss_pred ECCCCccHHHHHHHHHH
Confidence 34479999999985543
No 76
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=84.51 E-value=4.2 Score=35.08 Aligned_cols=70 Identities=13% Similarity=0.260 Sum_probs=39.9
Q ss_pred CCceEEEEecCCCc----------------hhHHHHHcccCCCC--CCcEEEEEeCcchhhccc-----CcccEEEcCCC
Q 045618 95 RTKVLIVLDDVNKV----------------GQLEYLIGGLERFG--PGSRIIVTTRDRRVLDNF-----GVGNIYKVNGL 151 (349)
Q Consensus 95 ~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~--~~~~IlvTTR~~~~~~~~-----~~~~~~~l~~L 151 (349)
....++++|+++.. ..+..+...+.... ....++.||..++..... .....+.++..
T Consensus 131 ~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p 210 (278)
T 1iy2_A 131 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210 (278)
T ss_dssp SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCC
T ss_pred cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCc
Confidence 35689999999421 11233333332211 223455566665543211 23457889988
Q ss_pred ChHhHHHHHHHhh
Q 045618 152 KYREALELFCNCA 164 (349)
Q Consensus 152 ~~~ea~~L~~~~a 164 (349)
+.++-.+++...+
T Consensus 211 ~~~~r~~il~~~~ 223 (278)
T 1iy2_A 211 DVKGREQILRIHA 223 (278)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9888888887665
No 77
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=84.47 E-value=1.5 Score=36.05 Aligned_cols=16 Identities=13% Similarity=-0.128 Sum_probs=12.7
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|.||||++...
T Consensus 25 i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 25 VYGPYASGKTTLALQT 40 (220)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4566899999999844
No 78
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.42 E-value=4.7 Score=34.11 Aligned_cols=70 Identities=13% Similarity=0.290 Sum_probs=39.5
Q ss_pred CCceEEEEecCCCc------------h----hHHHHHcccCCC--CCCcEEEEEeCcchhhcc-c----CcccEEEcCCC
Q 045618 95 RTKVLIVLDDVNKV------------G----QLEYLIGGLERF--GPGSRIIVTTRDRRVLDN-F----GVGNIYKVNGL 151 (349)
Q Consensus 95 ~~~~LlVlDdv~~~------------~----~~~~l~~~~~~~--~~~~~IlvTTR~~~~~~~-~----~~~~~~~l~~L 151 (349)
....++++|+++.. . .+..+...+... .....++.||..++.... + .....+.++..
T Consensus 107 ~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p 186 (254)
T 1ixz_A 107 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 186 (254)
T ss_dssp SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSC
T ss_pred cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCc
Confidence 35689999999421 1 123333332211 223345556666654322 1 23457888988
Q ss_pred ChHhHHHHHHHhh
Q 045618 152 KYREALELFCNCA 164 (349)
Q Consensus 152 ~~~ea~~L~~~~a 164 (349)
+.++-.+++...+
T Consensus 187 ~~~~r~~il~~~~ 199 (254)
T 1ixz_A 187 DVKGREQILRIHA 199 (254)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9888888887665
No 79
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=82.29 E-value=3.9 Score=41.31 Aligned_cols=97 Identities=10% Similarity=0.153 Sum_probs=55.3
Q ss_pred HHHHhCCCceEEEEecCCCc-------------hhHHHHHcccCCC--CCCcEEEEEeCcchhhc-cc----CcccEEEc
Q 045618 89 VRERLRRTKVLIVLDDVNKV-------------GQLEYLIGGLERF--GPGSRIIVTTRDRRVLD-NF----GVGNIYKV 148 (349)
Q Consensus 89 l~~~L~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~~~~IlvTTR~~~~~~-~~----~~~~~~~l 148 (349)
+........++|+||+++.. .....|+..+... ..+..||.||..++... .+ .....+++
T Consensus 290 F~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i 369 (806)
T 3cf2_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369 (806)
T ss_dssp HHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEEC
T ss_pred HHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEec
Confidence 33444567899999999632 1123333322111 23445666666554322 11 23457899
Q ss_pred CCCChHhHHHHHHHhhccCC-CCChhHHHHHHHHHHHcCCCc
Q 045618 149 NGLKYREALELFCNCAFKEN-HCPEDLLVHSKRILDYANGNP 189 (349)
Q Consensus 149 ~~L~~~ea~~L~~~~a~~~~-~~~~~~~~~~~~i~~~c~glP 189 (349)
+..+.++-.++|..+..... ..... ...|++.+.|.-
T Consensus 370 ~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 370 GIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred CCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 99999999999987763322 11222 346777787764
No 80
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=78.48 E-value=11 Score=33.37 Aligned_cols=101 Identities=12% Similarity=-0.063 Sum_probs=65.5
Q ss_pred hCCCceEEEEecCCC-c--hhHHHHHcccCCCCCCcEEEEEeCc-------chhhccc-CcccEEEcCCCChHhHHHHHH
Q 045618 93 LRRTKVLIVLDDVNK-V--GQLEYLIGGLERFGPGSRIIVTTRD-------RRVLDNF-GVGNIYKVNGLKYREALELFC 161 (349)
Q Consensus 93 L~~~~~LlVlDdv~~-~--~~~~~l~~~~~~~~~~~~IlvTTR~-------~~~~~~~-~~~~~~~l~~L~~~ea~~L~~ 161 (349)
+.+.+-++|+|+++. . ...+.|...+....+++.+|+++.. ..+...+ .....++..+++.++-...+.
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 346677889999975 3 4566666665544567777776643 1233333 234579999999999888887
Q ss_pred HhhccCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 045618 162 NCAFKENHCPEDLLVHSKRILDYANGNPLAVRVL 195 (349)
Q Consensus 162 ~~a~~~~~~~~~~~~~~~~i~~~c~glPLAl~~~ 195 (349)
..+-..... -.++.+..|++.++|-+.++...
T Consensus 153 ~~~~~~g~~--i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 153 ARAKQLNLE--LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHTTCE--ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHcCCC--CCHHHHHHHHHHhchHHHHHHHH
Confidence 766332211 12355778888899988766553
No 81
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=78.23 E-value=6 Score=25.15 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=44.9
Q ss_pred HHHHHHhcccCCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHHH
Q 045618 238 KSLFLDIACFFNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDLL 293 (349)
Q Consensus 238 ~~~f~~la~fp~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~lv 293 (349)
-.++..++.++++.+...+.+-+.-. ..+...++.|...+-+... +.+|+|-+-+
T Consensus 6 eaLLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKR-sSRYrlkphl 61 (68)
T 3i71_A 6 DELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKR-SSRYRLKPHL 61 (68)
T ss_dssp HHHHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-CCEEEECC--
T ss_pred HHHHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhh-ccccccCcch
Confidence 35677888999999999988887766 6788899999999999887 7889886643
No 82
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=75.15 E-value=2.8 Score=39.94 Aligned_cols=18 Identities=17% Similarity=-0.142 Sum_probs=13.7
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|.|||++|+....
T Consensus 46 L~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 46 LLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp EECCSSSSHHHHHHHGGG
T ss_pred eecCchHHHHHHHHHHHH
Confidence 346679999999986544
No 83
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=74.29 E-value=8.5 Score=38.51 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=13.0
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|.|||++|+...
T Consensus 493 l~G~~GtGKT~la~~la 509 (758)
T 1r6b_X 493 FAGPTGVGKTEVTVQLS 509 (758)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHH
Confidence 34668999999998443
No 84
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=74.23 E-value=2.5 Score=42.74 Aligned_cols=93 Identities=10% Similarity=0.151 Sum_probs=37.5
Q ss_pred HhCCCceEEEEecCCCc----------------hhHHHHHcccCCC--CCCcEEEEEeCcchhhcc--c---CcccEEEc
Q 045618 92 RLRRTKVLIVLDDVNKV----------------GQLEYLIGGLERF--GPGSRIIVTTRDRRVLDN--F---GVGNIYKV 148 (349)
Q Consensus 92 ~L~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~~~~IlvTTR~~~~~~~--~---~~~~~~~l 148 (349)
.-+...+.|.+|+++.. ..+..|+..+... ..+.-||-||..++.... + .....+.+
T Consensus 566 Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v 645 (806)
T 3cf2_A 566 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645 (806)
T ss_dssp HHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC
T ss_pred HHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEE
Confidence 33457899999999631 1234444433211 223344445555543221 1 23457888
Q ss_pred CCCChHhHHHHHHHhhccCCC-CChhHHHHHHHHHHHcCCC
Q 045618 149 NGLKYREALELFCNCAFKENH-CPEDLLVHSKRILDYANGN 188 (349)
Q Consensus 149 ~~L~~~ea~~L~~~~a~~~~~-~~~~~~~~~~~i~~~c~gl 188 (349)
+..+.++-.++|+.+...... ...+ ...|++.+.|.
T Consensus 646 ~lPd~~~R~~il~~~l~~~~~~~~~d----l~~la~~t~g~ 682 (806)
T 3cf2_A 646 PLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGF 682 (806)
T ss_dssp -----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHhCCCC
Confidence 887877778888766522221 1112 33556666654
No 85
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=73.00 E-value=1.8 Score=38.70 Aligned_cols=16 Identities=6% Similarity=-0.213 Sum_probs=12.6
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+-|.|||+||...
T Consensus 128 I~GpPGsGKTtLAlql 143 (331)
T 2vhj_A 128 VTGKGNSGKTPLVHAL 143 (331)
T ss_dssp EECSCSSSHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 4566799999999843
No 86
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=72.88 E-value=4.8 Score=41.03 Aligned_cols=17 Identities=12% Similarity=-0.019 Sum_probs=13.3
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|.|||++|+...
T Consensus 593 l~Gp~GtGKT~lA~~la 609 (854)
T 1qvr_A 593 FLGPTGVGKTELAKTLA 609 (854)
T ss_dssp EBSCSSSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45678999999998443
No 87
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=67.70 E-value=2.4 Score=36.27 Aligned_cols=10 Identities=20% Similarity=0.066 Sum_probs=9.3
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||+|.
T Consensus 28 GGvGKTT~a~ 37 (262)
T 2ph1_A 28 GGVGKSTVTA 37 (262)
T ss_dssp SCTTHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9999999977
No 88
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=65.77 E-value=2.3 Score=34.61 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=14.1
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
.+||+|.|||||++...
T Consensus 6 i~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 6 ISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 57899999999988543
No 89
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=65.57 E-value=5.6 Score=32.66 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=30.1
Q ss_pred HHHHHhCCC-ceEEEEecCCC-----chhHHHHHcccCCCCCCcEEEEEeCcch
Q 045618 88 YVRERLRRT-KVLIVLDDVNK-----VGQLEYLIGGLERFGPGSRIIVTTRDRR 135 (349)
Q Consensus 88 ~l~~~L~~~-~~LlVlDdv~~-----~~~~~~l~~~~~~~~~~~~IlvTTR~~~ 135 (349)
..++.+.+. -=|||||.+.. .-..+.+...+...-....||+|+|+..
T Consensus 111 ~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 111 HGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 456666554 45999999832 2223334443433356788999999974
No 90
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=64.81 E-value=2.1 Score=36.18 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=11.6
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
..++||+|||+++.
T Consensus 11 ~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 11 LGAAPGVGKTYAML 24 (228)
T ss_dssp EESSTTSSHHHHHH
T ss_pred EECCCCCcHHHHHH
Confidence 45679999999976
No 91
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=61.84 E-value=9.8 Score=34.34 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=38.2
Q ss_pred CCHHHHHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchhh
Q 045618 83 PNLPEYVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRVL 137 (349)
Q Consensus 83 ~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~ 137 (349)
.+..+.+...|....=+|++|.+.+.+.++.+.... ..|..||+||-..+..
T Consensus 183 ~~~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 183 LGFSEALRSALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCHHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CCHHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 455568999999999999999999877766654432 2356688888776544
No 92
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=59.21 E-value=2.9 Score=34.50 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=10.4
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 8 ~KGGvGKTT~a~ 19 (209)
T 3cwq_A 8 FKGGVGKTTTAV 19 (209)
T ss_dssp SSTTSSHHHHHH
T ss_pred CCCCCcHHHHHH
Confidence 459999999987
No 93
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=58.78 E-value=3.1 Score=33.30 Aligned_cols=18 Identities=6% Similarity=-0.101 Sum_probs=14.6
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
..+||.|.|||||++...
T Consensus 9 ~i~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 9 VLLGAHGVGRRHIKNTLI 26 (180)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 467889999999998543
No 94
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=58.65 E-value=2.9 Score=35.48 Aligned_cols=14 Identities=14% Similarity=-0.126 Sum_probs=11.9
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.++.||.||||++.
T Consensus 19 ~~GkgGvGKTTl~~ 32 (262)
T 1yrb_A 19 FVGTAGSGKTTLTG 32 (262)
T ss_dssp EECSTTSSHHHHHH
T ss_pred EeCCCCCCHHHHHH
Confidence 45679999999987
No 95
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=58.11 E-value=3.1 Score=33.76 Aligned_cols=12 Identities=17% Similarity=0.122 Sum_probs=10.4
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 9 ~kgG~GKTt~a~ 20 (206)
T 4dzz_A 9 PKGGSGKTTAVI 20 (206)
T ss_dssp SSTTSSHHHHHH
T ss_pred CCCCccHHHHHH
Confidence 449999999987
No 96
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=57.90 E-value=2.9 Score=37.13 Aligned_cols=12 Identities=25% Similarity=0.094 Sum_probs=9.9
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
|=||+||||.+.
T Consensus 55 GKGGVGKTTtav 66 (314)
T 3fwy_A 55 GKGGIGKSTTSS 66 (314)
T ss_dssp CSTTSSHHHHHH
T ss_pred CCCccCHHHHHH
Confidence 349999999966
No 97
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=57.83 E-value=39 Score=34.04 Aligned_cols=70 Identities=14% Similarity=0.283 Sum_probs=38.9
Q ss_pred CCCceEEEEecCCCc--------h-----hHHHHH---cccCCCCCCcEEEEEeCcchhhc-cc----CcccEEEcCCCC
Q 045618 94 RRTKVLIVLDDVNKV--------G-----QLEYLI---GGLERFGPGSRIIVTTRDRRVLD-NF----GVGNIYKVNGLK 152 (349)
Q Consensus 94 ~~~~~LlVlDdv~~~--------~-----~~~~l~---~~~~~~~~~~~IlvTTR~~~~~~-~~----~~~~~~~l~~L~ 152 (349)
.....++++|+++.. . ....+. ..... ..+..+|.||..+.... .+ .....+.+...+
T Consensus 295 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~ 373 (806)
T 1ypw_A 295 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373 (806)
T ss_dssp HHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCC
T ss_pred hcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cccEEEecccCCchhcCHHHhcccccccccccCCCC
Confidence 345789999999421 1 112222 22211 23445665665543221 11 123467888889
Q ss_pred hHhHHHHHHHhh
Q 045618 153 YREALELFCNCA 164 (349)
Q Consensus 153 ~~ea~~L~~~~a 164 (349)
.++-.+++...+
T Consensus 374 ~~~r~~il~~~~ 385 (806)
T 1ypw_A 374 ATGRLEILQIHT 385 (806)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 98
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=57.16 E-value=4.9 Score=31.35 Aligned_cols=18 Identities=6% Similarity=-0.188 Sum_probs=14.2
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+.|.||||+++....
T Consensus 6 l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 6 LEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EECSSSSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 567789999999985443
No 99
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=56.95 E-value=4.9 Score=31.29 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=13.8
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|.||||+|+..
T Consensus 6 l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 6 ITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EECCTTSCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5688899999999866
No 100
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=56.29 E-value=4.7 Score=35.16 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=18.8
Q ss_pred cCCCCCchhhHHHHHHhhhh--cceeecc
Q 045618 16 RATSCGIVKIRRCLMVFRLC--STECLSE 42 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~--~w~~~~~ 42 (349)
..|+.|-||||+|+...... .+++++.
T Consensus 38 l~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 38 LGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 56778999999999665432 4555554
No 101
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=56.14 E-value=3.5 Score=34.59 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=11.0
Q ss_pred CCCCCchhhHHHH
Q 045618 17 ATSCGIVKIRRCL 29 (349)
Q Consensus 17 ~~~gGiGKT~la~ 29 (349)
++-||+||||+|.
T Consensus 6 s~kGGvGKTt~a~ 18 (254)
T 3kjh_A 6 AGKGGVGKTTVAA 18 (254)
T ss_dssp ECSSSHHHHHHHH
T ss_pred ecCCCCCHHHHHH
Confidence 3569999999987
No 102
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=54.26 E-value=3.9 Score=34.94 Aligned_cols=12 Identities=25% Similarity=0.091 Sum_probs=10.4
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 8 ~KGGvGKTT~a~ 19 (269)
T 1cp2_A 8 GKGGIGKSTTTQ 19 (269)
T ss_dssp ECTTSSHHHHHH
T ss_pred cCCCCcHHHHHH
Confidence 469999999987
No 103
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=53.99 E-value=4.2 Score=32.14 Aligned_cols=18 Identities=6% Similarity=-0.236 Sum_probs=14.3
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+.|-||||+++...+
T Consensus 8 l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 8 LNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 567899999999985443
No 104
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=52.23 E-value=4.3 Score=34.65 Aligned_cols=10 Identities=20% Similarity=0.292 Sum_probs=9.4
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||+|.
T Consensus 37 GGvGKTT~a~ 46 (267)
T 3k9g_A 37 GGVGKSTSAI 46 (267)
T ss_dssp SSSCHHHHHH
T ss_pred CCchHHHHHH
Confidence 9999999987
No 105
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=51.81 E-value=4.5 Score=33.85 Aligned_cols=11 Identities=9% Similarity=-0.317 Sum_probs=9.8
Q ss_pred CCCchhhHHHH
Q 045618 19 SCGIVKIRRCL 29 (349)
Q Consensus 19 ~gGiGKT~la~ 29 (349)
-||+||||+|.
T Consensus 13 kGGvGKTt~a~ 23 (245)
T 3ea0_A 13 KGGDGGSCIAA 23 (245)
T ss_dssp STTSSHHHHHH
T ss_pred CCCcchHHHHH
Confidence 49999999987
No 106
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=51.73 E-value=54 Score=30.35 Aligned_cols=92 Identities=12% Similarity=0.010 Sum_probs=52.4
Q ss_pred eEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEe---------Cc----c-hhhccc-CcccEEEcCCCChHhHHHHH
Q 045618 98 VLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTT---------RD----R-RVLDNF-GVGNIYKVNGLKYREALELF 160 (349)
Q Consensus 98 ~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTT---------R~----~-~~~~~~-~~~~~~~l~~L~~~ea~~L~ 160 (349)
-++++|+++.. +..+.|+..+...... .+|+.| .+ + .+...+ .-...+.+++++.++-.+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999854 4566676666543444 344344 21 1 111111 12235799999999999999
Q ss_pred HHhhccCCCCChhHHHHHHHHHHHc-CCCchHH
Q 045618 161 CNCAFKENHCPEDLLVHSKRILDYA-NGNPLAV 192 (349)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~i~~~c-~glPLAl 192 (349)
...+-...... ..+....|++.+ +|.|...
T Consensus 376 ~~~~~~~~~~~--~~~~~~~i~~~a~~g~~r~a 406 (456)
T 2c9o_A 376 KIRAQTEGINI--SEEALNHLGEIGTKTTLRYS 406 (456)
T ss_dssp HHHHHHHTCCB--CHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHhCCCC--CHHHHHHHHHHccCCCHHHH
Confidence 87652211111 124456677777 6776543
No 107
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=50.89 E-value=5 Score=32.71 Aligned_cols=19 Identities=16% Similarity=0.058 Sum_probs=15.2
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
...+||.|.|||||++...
T Consensus 7 i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3477889999999988543
No 108
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=50.78 E-value=7 Score=31.04 Aligned_cols=18 Identities=11% Similarity=-0.129 Sum_probs=14.2
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+.|.||||+++....
T Consensus 10 l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 10 LIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 567789999999985543
No 109
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=50.62 E-value=4.8 Score=34.90 Aligned_cols=12 Identities=25% Similarity=0.091 Sum_probs=10.4
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 9 ~KGGvGKTT~a~ 20 (289)
T 2afh_E 9 GKGGIGKSTTTQ 20 (289)
T ss_dssp ECTTSSHHHHHH
T ss_pred CCCcCcHHHHHH
Confidence 459999999977
No 110
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=50.49 E-value=7.5 Score=31.45 Aligned_cols=18 Identities=11% Similarity=-0.151 Sum_probs=14.1
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+.|-||||+|+....
T Consensus 23 l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 23 VMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp EECSTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 566789999999985544
No 111
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=50.40 E-value=35 Score=22.18 Aligned_cols=53 Identities=9% Similarity=-0.077 Sum_probs=38.9
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEe
Q 045618 237 EKSLFLDIACFFNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQM 289 (349)
Q Consensus 237 ~~~~f~~la~fp~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~m 289 (349)
...++..++--+..++...+....... ......+..|.+.++|.....|+|++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y~l 65 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYWSI 65 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCceEee
Confidence 344555554323347788888888877 77888899999999998766788865
No 112
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=49.82 E-value=5 Score=33.89 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=10.3
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 10 ~kgGvGKTt~a~ 21 (260)
T 3q9l_A 10 GKGGVGKTTSSA 21 (260)
T ss_dssp SSTTSSHHHHHH
T ss_pred CCCCCcHHHHHH
Confidence 449999999987
No 113
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=49.38 E-value=5.1 Score=35.05 Aligned_cols=12 Identities=25% Similarity=0.094 Sum_probs=10.3
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 48 ~KGGvGKTT~a~ 59 (307)
T 3end_A 48 GKGGIGKSTTSS 59 (307)
T ss_dssp CSTTSSHHHHHH
T ss_pred CCCCccHHHHHH
Confidence 449999999987
No 114
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=49.13 E-value=5.4 Score=32.72 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=14.4
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
...||.|.||||+++...
T Consensus 12 ~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 12 VLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHH
Confidence 367889999999998543
No 115
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=48.58 E-value=5.4 Score=34.68 Aligned_cols=12 Identities=17% Similarity=0.086 Sum_probs=10.4
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 44 ~KGGvGKTT~a~ 55 (298)
T 2oze_A 44 FKGGVGKSKLST 55 (298)
T ss_dssp SSSSSSHHHHHH
T ss_pred CCCCchHHHHHH
Confidence 459999999977
No 116
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=48.54 E-value=6.7 Score=32.17 Aligned_cols=17 Identities=6% Similarity=0.001 Sum_probs=13.9
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
.+||.|.|||||+....
T Consensus 24 l~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 24 LIGASGVGRSHIKNALL 40 (197)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHH
Confidence 57889999999988544
No 117
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=48.49 E-value=53 Score=24.42 Aligned_cols=84 Identities=13% Similarity=0.178 Sum_probs=55.9
Q ss_pred cHHHHHHHhHhc--CChhHHHHHHHhccc---CCC-CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC----C----C
Q 045618 221 DIYDVLKISYNE--IKAEEKSLFLDIACF---FNG-QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR----G----N 285 (349)
Q Consensus 221 ~l~~~l~~s~~~--L~~~~~~~f~~la~f---p~~-~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~----~----~ 285 (349)
.+...+...|.. |++..-.++.++.-| +.. .+...+....... ......++.|.+++||.... + .
T Consensus 16 ~i~~~ll~~y~~lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~ 95 (128)
T 2vn2_A 16 AVPKLLLGHYKQLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNE 95 (128)
T ss_dssp EEEHHHHTTTTTTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------
T ss_pred echHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEE
Confidence 345555556764 445444455555444 112 6777887777666 67888999999999999753 1 3
Q ss_pred eEEecHHHHHHHHHHHhhh
Q 045618 286 QLQMHDLLQEMGREIVRQE 304 (349)
Q Consensus 286 ~~~mH~lv~~~a~~~~~~e 304 (349)
.|.+-+++..+..-...+.
T Consensus 96 ~Ydl~pl~~kL~~~~~~~~ 114 (128)
T 2vn2_A 96 KYTLEPLWEKLVHHLYTQA 114 (128)
T ss_dssp CEECHHHHHHHHHHHHHHH
T ss_pred EEehHHHHHHHHHHHHHHH
Confidence 5999999988876654443
No 118
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=48.46 E-value=5.3 Score=32.02 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=14.4
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
...||.|-||||+++...
T Consensus 5 ~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 5 VISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEESSSSSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 467889999999988543
No 119
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=47.95 E-value=8.2 Score=31.23 Aligned_cols=18 Identities=17% Similarity=-0.092 Sum_probs=14.0
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+.|-||||+++..-.
T Consensus 30 l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 30 LTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 567789999999985443
No 120
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=47.92 E-value=5.7 Score=33.76 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=10.2
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 14 ~kGGvGKTt~a~ 25 (257)
T 1wcv_1 14 QKGGVGKTTTAI 25 (257)
T ss_dssp SSCCHHHHHHHH
T ss_pred CCCCchHHHHHH
Confidence 349999999977
No 121
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=47.48 E-value=5.9 Score=34.33 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=10.3
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 12 ~KGGvGKTT~a~ 23 (286)
T 2xj4_A 12 EKGGAGKSTIAV 23 (286)
T ss_dssp SSSCTTHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 349999999987
No 122
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=47.17 E-value=5.7 Score=32.11 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=15.2
Q ss_pred cccCCCCCchhhHHHHHHhh
Q 045618 14 LNRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f~ 33 (349)
....|+.|-||||+++....
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 34678889999999885443
No 123
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=47.13 E-value=5.9 Score=32.93 Aligned_cols=12 Identities=17% Similarity=-0.042 Sum_probs=10.3
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 10 ~kgGvGKTt~a~ 21 (237)
T 1g3q_A 10 GKGGTGKTTVTA 21 (237)
T ss_dssp SSTTSSHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 449999999977
No 124
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=46.83 E-value=9.2 Score=29.87 Aligned_cols=19 Identities=11% Similarity=-0.167 Sum_probs=14.7
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
...|+-|-||||+++....
T Consensus 8 ~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 8 FLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3567889999999985443
No 125
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=46.62 E-value=6.3 Score=32.12 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=13.7
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|.||||+++...
T Consensus 17 l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 17 VCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp EECCTTSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56788999999998543
No 126
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=46.50 E-value=9.6 Score=29.86 Aligned_cols=18 Identities=11% Similarity=-0.130 Sum_probs=14.3
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+|+....
T Consensus 7 i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 7 TIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHh
Confidence 567789999999986544
No 127
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=46.13 E-value=5.5 Score=34.96 Aligned_cols=14 Identities=21% Similarity=-0.043 Sum_probs=11.6
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|++|.||||++.
T Consensus 110 lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 110 LFGSTGAGKTTTLA 123 (296)
T ss_dssp EEESTTSSHHHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 45668999999987
No 128
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=45.32 E-value=11 Score=29.60 Aligned_cols=19 Identities=16% Similarity=-0.150 Sum_probs=14.8
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
...|+.|-||||+++....
T Consensus 12 ~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 12 VLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEECSTTSCHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 3567789999999985544
No 129
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=45.10 E-value=6.1 Score=32.35 Aligned_cols=18 Identities=11% Similarity=-0.103 Sum_probs=14.0
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
....|+.|-|||||++..
T Consensus 25 v~I~G~sGsGKSTl~~~l 42 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPL 42 (208)
T ss_dssp EEEECCTTSCTHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 346777899999999843
No 130
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=44.92 E-value=6.7 Score=32.66 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=24.3
Q ss_pred HHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcch
Q 045618 88 YVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRR 135 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~ 135 (349)
.+.+.+... -++||| + +......+...+. .+..|+++|-+..
T Consensus 100 ~v~~~l~~G-~illLD-L-D~~~~~~i~~~l~---~~~tI~i~th~~~ 141 (219)
T 1s96_A 100 AIEQVLATG-VDVFLD-I-DWQGAQQIRQKMP---HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHHTTT-CEEEEE-C-CHHHHHHHHHHCT---TCEEEEEECSSHH
T ss_pred HHHHHHhcC-CeEEEE-E-CHHHHHHHHHHcc---CCEEEEEECCCHH
Confidence 466666654 467888 3 3333444444443 4667888886644
No 131
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=44.89 E-value=11 Score=30.49 Aligned_cols=25 Identities=16% Similarity=-0.129 Sum_probs=16.9
Q ss_pred cCCCCCchhhHHHHHHhhhhcceee
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECL 40 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~ 40 (349)
..|+-|-||||+++......-++.+
T Consensus 34 l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 34 VMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp EECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EECCCCCCHHHHHHHHHHhhCCeEE
Confidence 5677899999999865443334333
No 132
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=44.88 E-value=6.6 Score=32.30 Aligned_cols=12 Identities=17% Similarity=0.005 Sum_probs=10.1
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||++.
T Consensus 9 ~kgGvGKTt~a~ 20 (224)
T 1byi_A 9 TDTEVGKTVASC 20 (224)
T ss_dssp SSTTSCHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 349999999977
No 133
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=44.86 E-value=44 Score=29.53 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=29.9
Q ss_pred CHHHHHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcc
Q 045618 84 NLPEYVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDR 134 (349)
Q Consensus 84 ~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~ 134 (349)
.....+...|....=+|++|.+.+.+.++.+. .+. ..+..+|+||...
T Consensus 228 ~~r~~la~aL~~~p~ilildE~~~~e~~~~l~-~~~--~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 228 TSADCLKSCLRMRPDRIILGELRSSEAYDFYN-VLC--SGHKGTLTTLHAG 275 (330)
T ss_dssp CHHHHHHHHTTSCCSEEEECCCCSTHHHHHHH-HHH--TTCCCEEEEEECS
T ss_pred hHHHHHHHHhhhCCCEEEEcCCChHHHHHHHH-HHh--cCCCEEEEEEccc
Confidence 33447888888888899999998865555443 322 1122356666543
No 134
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=44.84 E-value=6.3 Score=35.60 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=10.3
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 9 ~KGGvGKTT~a~ 20 (361)
T 3pg5_A 9 NKGGVGKTTLST 20 (361)
T ss_dssp SSCCHHHHHHHH
T ss_pred CCCCCcHHHHHH
Confidence 449999999976
No 135
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=44.77 E-value=11 Score=29.75 Aligned_cols=17 Identities=12% Similarity=-0.081 Sum_probs=13.6
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|.||||+++...
T Consensus 16 i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 16 LTGTPGVGKTTLGKELA 32 (180)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHH
Confidence 56778999999998543
No 136
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=44.66 E-value=6.7 Score=31.43 Aligned_cols=62 Identities=6% Similarity=0.133 Sum_probs=33.1
Q ss_pred hCCCceEEEEecCC-----CchhHHHHHcccCCCCCCcEEEEEeC---cchhhcccC---cccEEEcCCCChHhH
Q 045618 93 LRRTKVLIVLDDVN-----KVGQLEYLIGGLERFGPGSRIIVTTR---DRRVLDNFG---VGNIYKVNGLKYREA 156 (349)
Q Consensus 93 L~~~~~LlVlDdv~-----~~~~~~~l~~~~~~~~~~~~IlvTTR---~~~~~~~~~---~~~~~~l~~L~~~ea 156 (349)
+..+.-+++||.+. +....+.+...+.. .+..+|++|. +......+. ...++++...+.++.
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~ 168 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVI 168 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHH
Confidence 66777899999953 22223344443332 3554666663 333333321 235777776665444
No 137
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=43.98 E-value=7.4 Score=30.76 Aligned_cols=18 Identities=22% Similarity=0.047 Sum_probs=14.4
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+.|-||||+++..+.
T Consensus 14 l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 14 LIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EECCTTSCHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHcc
Confidence 567789999999996543
No 138
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=43.73 E-value=6.9 Score=32.42 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=14.5
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
..+|+.|-|||||++....
T Consensus 27 ~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 27 VICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 3567789999999885443
No 139
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=43.70 E-value=6.7 Score=34.80 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=10.2
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 21 gKGGvGKTTvA~ 32 (324)
T 3zq6_A 21 GKGGVGKTTISA 32 (324)
T ss_dssp ESTTSSHHHHHH
T ss_pred CCCCchHHHHHH
Confidence 349999999986
No 140
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=43.56 E-value=7 Score=34.17 Aligned_cols=17 Identities=12% Similarity=-0.078 Sum_probs=13.7
Q ss_pred cccCCCCCchhhHHHHH
Q 045618 14 LNRATSCGIVKIRRCLM 30 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~ 30 (349)
....|+.|-||||+++.
T Consensus 34 i~I~G~sGsGKSTla~~ 50 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQ 50 (290)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45677789999999983
No 141
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=43.46 E-value=11 Score=29.73 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=13.6
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|.||||+++...
T Consensus 8 i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 8 VTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp EECCTTSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56778999999998543
No 142
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=43.35 E-value=7.1 Score=33.07 Aligned_cols=12 Identities=17% Similarity=-0.053 Sum_probs=10.3
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 10 ~kgGvGKTt~a~ 21 (263)
T 1hyq_A 10 GKGGTGKTTITA 21 (263)
T ss_dssp SSSCSCHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 459999999977
No 143
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=43.10 E-value=6.8 Score=31.07 Aligned_cols=18 Identities=17% Similarity=-0.031 Sum_probs=14.1
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
.-.+|..|+|||+|....
T Consensus 5 v~ivG~~gvGKStLl~~l 22 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQL 22 (184)
T ss_dssp EEEESCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 346788999999998743
No 144
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=43.01 E-value=7.3 Score=35.00 Aligned_cols=12 Identities=17% Similarity=0.086 Sum_probs=10.1
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 33 gKGGvGKTTvA~ 44 (349)
T 3ug7_A 33 GKGGVGKTTMSA 44 (349)
T ss_dssp CSSSTTHHHHHH
T ss_pred CCCCccHHHHHH
Confidence 349999999976
No 145
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=42.53 E-value=19 Score=32.46 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=13.8
Q ss_pred HhHHHHhhCcceEEcCCCeEEe
Q 045618 268 YGLNVLVDKSLVTVSRGNQLQM 289 (349)
Q Consensus 268 ~~l~~L~~~sLl~~~~~~~~~m 289 (349)
+.++.-++.++|..+ +.+|+.
T Consensus 275 ~~~~~~~~~~~i~~~-g~w~~~ 295 (356)
T 3hr8_A 275 ELFNIAVNEGIVDRK-GSWYYY 295 (356)
T ss_dssp HHHHHHHHTTSSEEE-TTEEEE
T ss_pred cHHHHHHHcChhhcc-CcEEEE
Confidence 446666777888774 666665
No 146
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=42.24 E-value=21 Score=33.78 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=11.4
Q ss_pred CCCceEEEEecCC
Q 045618 94 RRTKVLIVLDDVN 106 (349)
Q Consensus 94 ~~~~~LlVlDdv~ 106 (349)
.++++||++||+.
T Consensus 252 ~G~dVLl~~Dslt 264 (502)
T 2qe7_A 252 KGKHALVVYDDLS 264 (502)
T ss_dssp TTCEEEEEEECHH
T ss_pred cCCcEEEEEecHH
Confidence 4789999999984
No 147
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=41.97 E-value=7.9 Score=34.08 Aligned_cols=14 Identities=14% Similarity=0.015 Sum_probs=12.2
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|++|.||||++.
T Consensus 107 lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 107 VVGVNGVGKTTTIA 120 (304)
T ss_dssp EECSTTSSHHHHHH
T ss_pred EECCCCCcHHHHHH
Confidence 56779999999987
No 148
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=41.67 E-value=7.3 Score=31.08 Aligned_cols=19 Identities=11% Similarity=-0.197 Sum_probs=14.6
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
...|+.|-||||+++....
T Consensus 13 ~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 13 LLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEECTTSCHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 3567789999999985543
No 149
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=41.63 E-value=8.1 Score=34.38 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=10.5
Q ss_pred CCCCCchhhHHHH
Q 045618 17 ATSCGIVKIRRCL 29 (349)
Q Consensus 17 ~~~gGiGKT~la~ 29 (349)
.+-||+||||+|.
T Consensus 25 sgkGGvGKTTva~ 37 (329)
T 2woo_A 25 GGKGGVGKTTTSC 37 (329)
T ss_dssp ECSSSSSHHHHHH
T ss_pred eCCCCCcHHHHHH
Confidence 3449999999976
No 150
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=41.22 E-value=8.1 Score=35.28 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=9.3
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||+|.
T Consensus 118 GGvGKTT~a~ 127 (398)
T 3ez2_A 118 GGVSKTVSTV 127 (398)
T ss_dssp SSSSHHHHHH
T ss_pred CCccHHHHHH
Confidence 9999999977
No 151
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=41.18 E-value=8.1 Score=35.00 Aligned_cols=10 Identities=10% Similarity=-0.004 Sum_probs=9.4
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||+|.
T Consensus 153 GGvGKTT~a~ 162 (373)
T 3fkq_A 153 GGVGTSTVAA 162 (373)
T ss_dssp TTSSHHHHHH
T ss_pred CCChHHHHHH
Confidence 9999999987
No 152
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=40.76 E-value=56 Score=37.73 Aligned_cols=64 Identities=11% Similarity=0.006 Sum_probs=36.2
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhCC
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPEYVRERLRR 95 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~ 95 (349)
.+|.||.||++|++.+-..+- .+-| -+.+++..+..+.-.++-.- ..+...++
T Consensus 1614 LvGvgGsGkqSltrLaa~i~~----~~~f---------qi~~~~~Y~~~~f~eDLk~l--------------~~~aG~~~ 1666 (2695)
T 4akg_A 1614 LIGASRTGKTILTRFVAWLNG----LKIV---------QPKIHRHSNLSDFDMILKKA--------------ISDCSLKE 1666 (2695)
T ss_dssp EECTTTSCHHHHHHHHHHHTT----CEEE---------CCCCCTTCCHHHHHHHHHHH--------------HHHHHHSC
T ss_pred EECCCCCcHHHHHHHHHHHhC----CeeE---------EEEeeCCCCHHHHHHHHHHH--------------HHHcCCCC
Confidence 467799999999995532211 1111 13444444555443332211 23344678
Q ss_pred CceEEEEecCC
Q 045618 96 TKVLIVLDDVN 106 (349)
Q Consensus 96 ~~~LlVlDdv~ 106 (349)
++..++++|..
T Consensus 1667 ~~~vFL~tD~q 1677 (2695)
T 4akg_A 1667 SRTCLIIDESN 1677 (2695)
T ss_dssp CCEEEEEETTT
T ss_pred CceEEEEeccc
Confidence 88888888874
No 153
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=40.76 E-value=8.1 Score=34.16 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=14.1
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
.+..|+.|-|||||++..
T Consensus 93 vgI~G~sGsGKSTL~~~L 110 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVL 110 (312)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHH
Confidence 346677899999999843
No 154
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=40.70 E-value=8.2 Score=31.50 Aligned_cols=18 Identities=6% Similarity=-0.114 Sum_probs=14.0
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+.|-|||||++....
T Consensus 25 l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 25 LSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 567789999999985443
No 155
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=40.34 E-value=12 Score=29.76 Aligned_cols=18 Identities=6% Similarity=-0.217 Sum_probs=13.8
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+++....
T Consensus 10 l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 10 VTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456789999999985443
No 156
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=40.21 E-value=7.5 Score=31.60 Aligned_cols=18 Identities=11% Similarity=-0.164 Sum_probs=13.8
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
....|+.|-||||+++..
T Consensus 25 i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp EEEEECTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 345667899999998843
No 157
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=40.00 E-value=8 Score=31.11 Aligned_cols=20 Identities=10% Similarity=-0.067 Sum_probs=15.3
Q ss_pred hcccCCCCCchhhHHHHHHh
Q 045618 13 ELNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~~~f 32 (349)
+....|+.|.|||||.....
T Consensus 7 kv~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 34567889999999987543
No 158
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=39.77 E-value=13 Score=30.53 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=15.5
Q ss_pred cccCCCCCchhhHHHHHHhh
Q 045618 14 LNRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f~ 33 (349)
....|+.|-||||+++....
T Consensus 8 i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45678899999999985443
No 159
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=39.75 E-value=8 Score=31.77 Aligned_cols=16 Identities=13% Similarity=-0.172 Sum_probs=12.6
Q ss_pred ccCCCCCchhhHHHHH
Q 045618 15 NRATSCGIVKIRRCLM 30 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~ 30 (349)
-.+|.+|.||||++..
T Consensus 42 ~ivG~~gvGKTtl~~~ 57 (226)
T 2hf9_A 42 DFMGAIGSGKTLLIEK 57 (226)
T ss_dssp EEEESTTSSHHHHHHH
T ss_pred EEEcCCCCCHHHHHHH
Confidence 3556699999999873
No 160
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=39.74 E-value=37 Score=25.73 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=56.6
Q ss_pred CcHHHHHHHhHhcCChhHHHH--HHHhccc-C--CC-CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC----CC---
Q 045618 220 PDIYDVLKISYNEIKAEEKSL--FLDIACF-F--NG-QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR----GN--- 285 (349)
Q Consensus 220 ~~l~~~l~~s~~~L~~~~~~~--f~~la~f-p--~~-~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~----~~--- 285 (349)
-.+...|-..|..|.-....+ ++.+..| . .+ .+.+.+....... ......|+.|.+++||.+.. +|
T Consensus 15 ~~ip~~LL~~y~~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~ 94 (135)
T 2v79_A 15 STIPNLLLTHYKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKF 94 (135)
T ss_dssp EEEEHHHHHHHHHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEE
T ss_pred ccchHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceE
Confidence 445666666777654444333 3333333 1 12 5677777777776 67788899999999999732 22
Q ss_pred -eEEecHHHHHHHHHHHhhh
Q 045618 286 -QLQMHDLLQEMGREIVRQE 304 (349)
Q Consensus 286 -~~~mH~lv~~~a~~~~~~e 304 (349)
.|.+-+++..+..-...+.
T Consensus 95 ~~ydL~pL~ekL~~~~~~~~ 114 (135)
T 2v79_A 95 EKYSLQPLWGKLYEYIQLAQ 114 (135)
T ss_dssp EEEECHHHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHHHHHHHH
Confidence 5999999998876665544
No 161
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=39.71 E-value=15 Score=29.38 Aligned_cols=18 Identities=11% Similarity=-0.055 Sum_probs=13.9
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|.||||+++....
T Consensus 5 i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 5 IFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCccCHHHHHHHHHH
Confidence 467789999999985443
No 162
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=39.43 E-value=9.1 Score=34.20 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=10.2
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 23 gkGGvGKTt~a~ 34 (334)
T 3iqw_A 23 GKGGVGKTTTSC 34 (334)
T ss_dssp CSTTSSHHHHHH
T ss_pred CCCCccHHHHHH
Confidence 349999999987
No 163
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=39.14 E-value=9.4 Score=30.77 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=14.3
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
...|+.|-||||+++...
T Consensus 10 ~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 10 VLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp EEECSTTSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 467788999999998543
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=39.03 E-value=7.4 Score=31.17 Aligned_cols=20 Identities=10% Similarity=-0.067 Sum_probs=15.4
Q ss_pred hcccCCCCCchhhHHHHHHh
Q 045618 13 ELNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~~~f 32 (349)
+....|+.|.|||||.....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 44567789999999987543
No 165
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=39.01 E-value=8.4 Score=29.29 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=13.8
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|.+|.|||+|+....
T Consensus 7 ~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 7 VVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 356779999999987543
No 166
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=39.00 E-value=7.9 Score=31.52 Aligned_cols=20 Identities=15% Similarity=0.003 Sum_probs=15.3
Q ss_pred cccCCCCCchhhHHHHHHhh
Q 045618 14 LNRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f~ 33 (349)
....|+.|-||||+++....
T Consensus 9 i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 44677889999999985443
No 167
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=38.92 E-value=9.4 Score=30.43 Aligned_cols=18 Identities=6% Similarity=-0.398 Sum_probs=13.8
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
...+|+.|.||||++...
T Consensus 7 i~i~G~sGsGKTTl~~~L 24 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKW 24 (169)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 346677899999998743
No 168
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=38.81 E-value=8.5 Score=29.83 Aligned_cols=18 Identities=6% Similarity=-0.136 Sum_probs=14.2
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
....|..|.|||+|....
T Consensus 6 v~lvG~~gvGKStL~~~l 23 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNAL 23 (165)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 346788999999998744
No 169
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=38.59 E-value=16 Score=28.64 Aligned_cols=18 Identities=11% Similarity=-0.154 Sum_probs=14.2
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+++....
T Consensus 9 i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 9 FIGFMGSGKSTLARALAK 26 (175)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 567789999999985443
No 170
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=38.54 E-value=9.9 Score=30.30 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=14.8
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
...|+.|-||||+++....
T Consensus 6 ~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 6 IITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHhc
Confidence 3568889999999985543
No 171
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=38.28 E-value=5.9 Score=31.61 Aligned_cols=18 Identities=11% Similarity=-0.075 Sum_probs=14.3
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
...+|+.|-|||||+...
T Consensus 5 v~IvG~SGsGKSTL~~~L 22 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRM 22 (171)
T ss_dssp EEEEESCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 446778999999998843
No 172
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=38.20 E-value=10 Score=28.76 Aligned_cols=17 Identities=6% Similarity=-0.177 Sum_probs=13.4
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|+....
T Consensus 6 v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 6 IVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHh
Confidence 56778999999987443
No 173
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=37.91 E-value=9.6 Score=33.86 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=14.2
Q ss_pred cccCCCCCchhhHHHHH
Q 045618 14 LNRATSCGIVKIRRCLM 30 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~ 30 (349)
.+..|+.|-||||+++.
T Consensus 95 igI~GpsGSGKSTl~~~ 111 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRV 111 (321)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45778899999999984
No 174
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=37.86 E-value=37 Score=30.76 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=29.7
Q ss_pred HHHHHhCCCc--eEEEEecCCCc---hhHHHHHcccCCCCCCcEEEEEeCcchhhcc
Q 045618 88 YVRERLRRTK--VLIVLDDVNKV---GQLEYLIGGLERFGPGSRIIVTTRDRRVLDN 139 (349)
Q Consensus 88 ~l~~~L~~~~--~LlVlDdv~~~---~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~ 139 (349)
.+...|-... -+||||++... .....+...+.....+..||++|.+..++..
T Consensus 305 ~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~ 361 (415)
T 4aby_A 305 MLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 361 (415)
T ss_dssp HHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh
Confidence 3333444445 79999999742 2233333222211347788888888777643
No 175
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=37.50 E-value=10 Score=32.68 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=14.9
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
..+|+.|.|||||....+.
T Consensus 6 ~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 6 MVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEESSSSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhC
Confidence 4578899999999885554
No 176
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=37.48 E-value=21 Score=33.85 Aligned_cols=14 Identities=43% Similarity=0.759 Sum_probs=12.1
Q ss_pred CCCceEEEEecCCC
Q 045618 94 RRTKVLIVLDDVNK 107 (349)
Q Consensus 94 ~~~~~LlVlDdv~~ 107 (349)
.++++||++||+..
T Consensus 253 ~G~dVLli~Dsltr 266 (507)
T 1fx0_A 253 RERHTLIIYDDLSK 266 (507)
T ss_dssp TTCEEEEEEECHHH
T ss_pred cCCcEEEEEecHHH
Confidence 58999999999854
No 177
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=37.37 E-value=17 Score=28.14 Aligned_cols=18 Identities=11% Similarity=-0.141 Sum_probs=13.9
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+++..-.
T Consensus 7 l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 7 MVGARGCGMTTVGRELAR 24 (173)
T ss_dssp EESCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 567789999999985433
No 178
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=37.28 E-value=15 Score=31.21 Aligned_cols=17 Identities=6% Similarity=-0.177 Sum_probs=13.8
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|-||||+|+...
T Consensus 6 I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 6 IYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHH
Confidence 56788999999998544
No 179
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=37.27 E-value=10 Score=33.57 Aligned_cols=14 Identities=14% Similarity=-0.088 Sum_probs=11.5
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.++++|.||||++.
T Consensus 110 ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 110 LVGVNGTGKTTSLA 123 (320)
T ss_dssp EESSTTSSHHHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 44669999999977
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=36.99 E-value=6.3 Score=34.63 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=17.1
Q ss_pred HHhhcccCCCCCchhhHHHHHHhh
Q 045618 10 LLAELNRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 10 ~~~~~~~~~~gGiGKT~la~~~f~ 33 (349)
+..++..+|+.|.|||||....|.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 333445678899999999886554
No 181
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=36.98 E-value=15 Score=28.91 Aligned_cols=18 Identities=11% Similarity=-0.215 Sum_probs=14.0
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+|+....
T Consensus 7 l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 7 LVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 567789999999985443
No 182
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=36.82 E-value=11 Score=32.85 Aligned_cols=14 Identities=14% Similarity=-0.109 Sum_probs=11.7
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.++++|.||||++.
T Consensus 103 i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 103 LVGLQGSGKTTTAA 116 (295)
T ss_dssp EECCTTTTHHHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 45679999999987
No 183
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=36.74 E-value=11 Score=30.48 Aligned_cols=16 Identities=13% Similarity=-0.078 Sum_probs=12.8
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|-||||+++..
T Consensus 30 l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 30 VTGLSGSGKSTLACAL 45 (200)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4567899999998843
No 184
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=36.73 E-value=11 Score=29.77 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=13.3
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|.+|.|||+|+....
T Consensus 26 vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 26 VVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHH
Confidence 55678999999987543
No 185
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=36.44 E-value=11 Score=33.96 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=10.2
Q ss_pred CCCCchhhHHHH
Q 045618 18 TSCGIVKIRRCL 29 (349)
Q Consensus 18 ~~gGiGKT~la~ 29 (349)
+-||+||||+|.
T Consensus 25 gkGGvGKTt~a~ 36 (348)
T 3io3_A 25 GKGGVGKTTTSS 36 (348)
T ss_dssp CSTTSSHHHHHH
T ss_pred CCCCCcHHHHHH
Confidence 349999999987
No 186
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=36.34 E-value=75 Score=25.83 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=17.7
Q ss_pred HHHHHhCCCceEEEEecCC-CchhHHHH
Q 045618 88 YVRERLRRTKVLIVLDDVN-KVGQLEYL 114 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~-~~~~~~~l 114 (349)
.+.+.+..... +|||..- ...+.+.|
T Consensus 67 lv~~~l~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 67 LIEEVFPKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp HHHHHCCSSSC-EEEESCCCSHHHHHHH
T ss_pred HHHHhhccCCc-eEecCCchhHHHHHHH
Confidence 77777877665 6899984 44555554
No 187
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=36.28 E-value=63 Score=26.05 Aligned_cols=45 Identities=11% Similarity=0.304 Sum_probs=38.5
Q ss_pred cCCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 247 FFNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 247 fp~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
++..++...+..+.+.. ......+..|.+.++|... .+++.++|.
T Consensus 174 i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~i~d~ 219 (227)
T 3d0s_A 174 VTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLE-GKSVLISDS 219 (227)
T ss_dssp EECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEEESCH
T ss_pred EcCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEec-CCEEEEcCH
Confidence 44458899999999988 7888899999999999987 788998874
No 188
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=36.27 E-value=11 Score=33.07 Aligned_cols=14 Identities=14% Similarity=-0.261 Sum_probs=11.8
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|+.|.||||+++
T Consensus 105 lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 105 IVGVNGGGKTTSLG 118 (302)
T ss_dssp EECCTTSCHHHHHH
T ss_pred EEcCCCCCHHHHHH
Confidence 55668999999977
No 189
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=36.20 E-value=11 Score=31.79 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=13.5
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
+..|+.|-||||+++..
T Consensus 29 gI~G~~GsGKSTl~k~L 45 (245)
T 2jeo_A 29 GVSGGTASGKSTVCEKI 45 (245)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 45677899999999844
No 190
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=36.20 E-value=11 Score=33.97 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=9.7
Q ss_pred CCCchhhHHHH
Q 045618 19 SCGIVKIRRCL 29 (349)
Q Consensus 19 ~gGiGKT~la~ 29 (349)
-||+||||+|.
T Consensus 26 KGGvGKTTvaa 36 (354)
T 2woj_A 26 KGGVGKTTSSC 36 (354)
T ss_dssp STTSSHHHHHH
T ss_pred CCCCcHHHHHH
Confidence 39999999976
No 191
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=35.88 E-value=11 Score=29.88 Aligned_cols=17 Identities=18% Similarity=-0.111 Sum_probs=13.2
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|.||||+++...
T Consensus 6 i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 6 VTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEECTTSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45678999999998443
No 192
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=35.30 E-value=12 Score=29.43 Aligned_cols=20 Identities=5% Similarity=-0.175 Sum_probs=15.0
Q ss_pred cccCCCCCchhhHHHHHHhh
Q 045618 14 LNRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f~ 33 (349)
....|..|.|||+|......
T Consensus 10 i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 34677789999999875443
No 193
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=35.27 E-value=12 Score=30.18 Aligned_cols=16 Identities=13% Similarity=-0.128 Sum_probs=13.1
Q ss_pred ccCCCCCchhhHHHHH
Q 045618 15 NRATSCGIVKIRRCLM 30 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~ 30 (349)
..+|+-|.||||+.+.
T Consensus 5 ~i~G~nG~GKTTll~~ 20 (189)
T 2i3b_A 5 FLTGPPGVGKTTLIHK 20 (189)
T ss_dssp EEESCCSSCHHHHHHH
T ss_pred EEECCCCChHHHHHHH
Confidence 3578889999999873
No 194
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=35.15 E-value=12 Score=34.87 Aligned_cols=13 Identities=23% Similarity=-0.071 Sum_probs=10.9
Q ss_pred CCCCCchhhHHHH
Q 045618 17 ATSCGIVKIRRCL 29 (349)
Q Consensus 17 ~~~gGiGKT~la~ 29 (349)
++.||.||||++.
T Consensus 106 vG~~GvGKTT~a~ 118 (433)
T 2xxa_A 106 AGLQGAGKTTSVG 118 (433)
T ss_dssp ECSTTSSHHHHHH
T ss_pred ECCCCCCHHHHHH
Confidence 4569999999977
No 195
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=35.12 E-value=12 Score=28.55 Aligned_cols=18 Identities=6% Similarity=-0.234 Sum_probs=14.0
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|.|||+|+....
T Consensus 9 ~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 9 VVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHH
Confidence 356778999999987544
No 196
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=34.99 E-value=7.3 Score=31.70 Aligned_cols=20 Identities=5% Similarity=-0.115 Sum_probs=15.0
Q ss_pred cccCCCCCchhhHHHHHHhh
Q 045618 14 LNRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f~ 33 (349)
....|+.|-||||+++..-.
T Consensus 24 i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 44667789999999985443
No 197
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=34.96 E-value=15 Score=29.35 Aligned_cols=19 Identities=21% Similarity=0.020 Sum_probs=14.4
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
...+|+.|.||||++....
T Consensus 9 i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 3466788999999987443
No 198
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=34.96 E-value=38 Score=32.05 Aligned_cols=14 Identities=43% Similarity=0.729 Sum_probs=12.0
Q ss_pred CCCceEEEEecCCC
Q 045618 94 RRTKVLIVLDDVNK 107 (349)
Q Consensus 94 ~~~~~LlVlDdv~~ 107 (349)
.++++||++||+..
T Consensus 252 ~G~dVLli~Dsltr 265 (513)
T 3oaa_A 252 RGEDALIIYDDLSK 265 (513)
T ss_dssp TTCEEEEEEETHHH
T ss_pred cCCCEEEEecChHH
Confidence 57999999999853
No 199
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=34.75 E-value=60 Score=29.80 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=15.0
Q ss_pred HHHHHHhCCCceEEEEecCCCc
Q 045618 87 EYVRERLRRTKVLIVLDDVNKV 108 (349)
Q Consensus 87 ~~l~~~L~~~~~LlVlDdv~~~ 108 (349)
|.+++ .++++||++||+-..
T Consensus 255 Eyfrd--~G~dVLil~DslTR~ 274 (427)
T 3l0o_A 255 KRLVE--FNYDVVILLDSLTRL 274 (427)
T ss_dssp HHHHH--TTCEEEEEEECHHHH
T ss_pred HHHHH--cCCCEEEecccchHH
Confidence 34553 689999999999644
No 200
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=34.57 E-value=17 Score=29.48 Aligned_cols=16 Identities=13% Similarity=-0.141 Sum_probs=13.1
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+-|.||||+|+..
T Consensus 5 l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 5 LMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4677899999999854
No 201
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=34.55 E-value=7.8 Score=35.48 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=2.4
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||+||||+|.
T Consensus 121 GGvGKTT~a~ 130 (403)
T 3ez9_A 121 GGVSKTVSTV 130 (403)
T ss_dssp -------CHH
T ss_pred CCchHHHHHH
Confidence 9999999976
No 202
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=34.07 E-value=17 Score=29.57 Aligned_cols=17 Identities=12% Similarity=-0.193 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|.||||+|+...
T Consensus 5 l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 5 LMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 46778999999998543
No 203
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=34.00 E-value=21 Score=28.21 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.3
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|-||||+|+...
T Consensus 8 l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 8 VLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56678999999998543
No 204
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=33.80 E-value=14 Score=29.26 Aligned_cols=16 Identities=13% Similarity=-0.145 Sum_probs=12.8
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|-||||+++..
T Consensus 18 l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 18 LTGLPGSGKTTIATRL 33 (186)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 4566899999999844
No 205
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=33.79 E-value=13 Score=29.80 Aligned_cols=18 Identities=11% Similarity=-0.040 Sum_probs=13.8
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
+-.+|..|+|||+|+...
T Consensus 26 i~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEECSTTSSHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 345677899999998743
No 206
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=33.60 E-value=97 Score=22.85 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHhCCCceEEEEecCCC----chhHHHHHcccCCCCCCcEEEEEeCcchh---hccc-CcccEEEcCCCCh
Q 045618 82 TPNLPEYVRERLRRTKVLIVLDDVNK----VGQLEYLIGGLERFGPGSRIIVTTRDRRV---LDNF-GVGNIYKVNGLKY 153 (349)
Q Consensus 82 ~~~~~~~l~~~L~~~~~LlVlDdv~~----~~~~~~l~~~~~~~~~~~~IlvTTR~~~~---~~~~-~~~~~~~l~~L~~ 153 (349)
..+..+.+...-....-++|+|---. .+.++.+... .+...||+.|...+. ...+ .....|-.+|++.
T Consensus 37 ~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~----~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~ 112 (153)
T 3cz5_A 37 AADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQW----DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDP 112 (153)
T ss_dssp ESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHH----CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCT
T ss_pred eCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHh----CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCH
Confidence 44555545444445566778774322 2234444433 344556655544321 1111 1233466778888
Q ss_pred HhHHHHHHHhh
Q 045618 154 REALELFCNCA 164 (349)
Q Consensus 154 ~ea~~L~~~~a 164 (349)
++-...+....
T Consensus 113 ~~L~~~i~~~~ 123 (153)
T 3cz5_A 113 AELVQAIEAIL 123 (153)
T ss_dssp THHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 87776666655
No 207
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=33.54 E-value=14 Score=29.30 Aligned_cols=17 Identities=12% Similarity=-0.154 Sum_probs=13.2
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 53 vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 53 IAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHh
Confidence 56668999999987443
No 208
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=33.53 E-value=19 Score=30.60 Aligned_cols=22 Identities=14% Similarity=-0.093 Sum_probs=16.2
Q ss_pred cCCCCCchhhHHHHHHhhhhcc
Q 045618 16 RATSCGIVKIRRCLMVFRLCST 37 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w 37 (349)
..|+.|-||||+++.......|
T Consensus 53 l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 53 LVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp EECSTTSCHHHHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHHhcCC
Confidence 6677899999999865543344
No 209
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=33.49 E-value=9.7 Score=31.61 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=10.5
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
...||.|-||||+++...
T Consensus 31 ~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 31 VLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEECSCC----CHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 467788999999988554
No 210
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=33.47 E-value=13 Score=30.67 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=12.6
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|.||||++...
T Consensus 29 i~G~~GsGKTtl~~~l 44 (243)
T 1n0w_A 29 MFGEFRTGKTQICHTL 44 (243)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EECCCCCcHHHHHHHH
Confidence 4566799999999843
No 211
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=33.41 E-value=13 Score=30.55 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|.|||+||....
T Consensus 39 I~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 39 ITGDSGVGKSETALELV 55 (205)
T ss_dssp EECCCTTTTHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56778999999998543
No 212
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=33.32 E-value=54 Score=25.95 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=36.9
Q ss_pred CCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 250 GQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 250 ~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
.++...+..+.+.. ......+..|.+.++|... .+++.++|.
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~i~d~ 188 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIRSG-YGKIQLLDL 188 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEESCH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEEEeCH
Confidence 37889999999988 7888899999999999986 788999885
No 213
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=33.31 E-value=1e+02 Score=24.27 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=43.6
Q ss_pred hHhcCChhHHHHHHHhcccCC-CCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC
Q 045618 229 SYNEIKAEEKSLFLDIACFFN-GQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR 283 (349)
Q Consensus 229 s~~~L~~~~~~~f~~la~fp~-~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~ 283 (349)
.+..|+...-.++.++.-.|+ +.+...+...+... -.....++.|.+++||....
T Consensus 35 ~~~~lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 35 YFGILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp HHCSSCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHccCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 444588877777777776664 48999999888877 77788899999999999753
No 214
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=33.30 E-value=22 Score=27.99 Aligned_cols=17 Identities=12% Similarity=-0.183 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|-||||+++...
T Consensus 9 l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 9 FLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EECCTTSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56778999999998543
No 215
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=32.94 E-value=14 Score=30.72 Aligned_cols=16 Identities=13% Similarity=-0.049 Sum_probs=12.4
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|-|||||++..
T Consensus 35 l~GpnGsGKSTLl~~i 50 (251)
T 2ehv_A 35 LTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHH
Confidence 4556799999998843
No 216
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=32.94 E-value=21 Score=32.77 Aligned_cols=28 Identities=7% Similarity=-0.202 Sum_probs=19.7
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccc
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEA 43 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~ 43 (349)
..|+.|-||||+|+.......|.+++..
T Consensus 263 l~G~pGSGKSTla~~L~~~~~~~~i~~D 290 (416)
T 3zvl_A 263 AVGFPGAGKSTFIQEHLVSAGYVHVNRD 290 (416)
T ss_dssp EESCTTSSHHHHHHHHTGGGTCEECCGG
T ss_pred EECCCCCCHHHHHHHHHHhcCcEEEccc
Confidence 4566799999999977665555555433
No 217
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=32.80 E-value=58 Score=38.22 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=34.4
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccccccccccCcceeehhhhccHHHHHHHHHHHhhcccCCCCCCHHHHHHHHhCC
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEALWKPSYLNSRAIRESRSIMNQRVSNKFLGWLVEQEQIRTPNLPEYVRERLRR 95 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~f~~~~~~~~~~v~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~l~~~L~~ 95 (349)
.+|.||.||++|++.+--.+- ..-| -+.+++..+..+.-.++-.- ..+...++
T Consensus 1651 LVGvgGSGkqSLtrLAa~i~~----~~vf---------qi~i~k~Y~~~~f~eDLk~l--------------~~~aG~~~ 1703 (3245)
T 3vkg_A 1651 LIGVSGGGKSVLSRFVAWMNG----LSIY---------TIKVNNNYKSSDFDDDLRML--------------LKRAGCKE 1703 (3245)
T ss_dssp EEESTTSSHHHHHHHHHHHTT----CEEE---------CCC----CCHHHHHHHHHHH--------------HHHHHTSC
T ss_pred EecCCCCcHHHHHHHHHHHhC----CeeE---------EEeeeCCCCHHHHHHHHHHH--------------HHHHhcCC
Confidence 456699999999985432211 1111 14455555665554333221 23344778
Q ss_pred CceEEEEecC
Q 045618 96 TKVLIVLDDV 105 (349)
Q Consensus 96 ~~~LlVlDdv 105 (349)
+++.++++|-
T Consensus 1704 ~~~vFL~tD~ 1713 (3245)
T 3vkg_A 1704 EKICFIFDES 1713 (3245)
T ss_dssp CCEEEEEEGG
T ss_pred CCEEEEEecc
Confidence 8999999886
No 218
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=32.71 E-value=1.2e+02 Score=25.74 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHHHHHHHHHHHhhh
Q 045618 248 FNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDLLQEMGREIVRQE 304 (349)
Q Consensus 248 p~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~lv~~~a~~~~~~e 304 (349)
+++.....+.....-. -.+...+..|.+.++|....+++|++-+-+..++.......
T Consensus 43 ~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y~LG~~~~~lg~~~~~~~ 100 (275)
T 3mq0_A 43 PRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGTLRIGPHSLRWANGFLSHL 100 (275)
T ss_dssp SSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSEEEECTHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcEEehHHHHHHHHHHHhcC
Confidence 4457788888888777 78889999999999999987788999998888887665443
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=32.67 E-value=12 Score=32.73 Aligned_cols=14 Identities=14% Similarity=-0.130 Sum_probs=11.6
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.++++|.||||++.
T Consensus 103 i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 103 LVGVQGTGKTTTAG 116 (297)
T ss_dssp EECSSCSSTTHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 45679999999977
No 220
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=32.54 E-value=15 Score=34.10 Aligned_cols=14 Identities=14% Similarity=-0.159 Sum_probs=11.5
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|++|.||||++.
T Consensus 102 lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 102 LVGVQGSGKTTTAG 115 (433)
T ss_dssp ECCCTTSCHHHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 45668999999976
No 221
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=32.51 E-value=14 Score=30.19 Aligned_cols=16 Identities=19% Similarity=-0.060 Sum_probs=12.4
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|.||||++...
T Consensus 28 i~G~~GsGKTtl~~~l 43 (235)
T 2w0m_A 28 LTGEPGTGKTIFSLHF 43 (235)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 4566799999998843
No 222
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=32.49 E-value=15 Score=28.37 Aligned_cols=17 Identities=12% Similarity=-0.025 Sum_probs=13.4
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
-..|..|+|||+|+...
T Consensus 8 ~i~G~~~vGKSsl~~~l 24 (175)
T 2nzj_A 8 VLLGDPGVGKTSLASLF 24 (175)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCccHHHHHHHH
Confidence 35677899999998743
No 223
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=32.33 E-value=14 Score=32.47 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=11.6
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|+.|.||||++.
T Consensus 109 ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 109 VVGVNGTGKTTSCG 122 (306)
T ss_dssp EECCTTSSHHHHHH
T ss_pred EEcCCCChHHHHHH
Confidence 45668999999987
No 224
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=32.31 E-value=12 Score=30.19 Aligned_cols=19 Identities=16% Similarity=-0.008 Sum_probs=14.6
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
...|+-|-||||+++....
T Consensus 5 ~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 5 GLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHH
Confidence 4567789999999985443
No 225
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=32.26 E-value=20 Score=31.82 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=14.5
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
.+||.|.|||+||.....
T Consensus 8 i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 8 IVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCcCCHHHHHHHHHH
Confidence 578899999999985443
No 226
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=32.05 E-value=68 Score=26.35 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 248 FNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 248 p~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
+-.++...+..+.+.. ......+.+|.+.++|... .+.+.+.|.
T Consensus 191 ~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~-~~~i~I~d~ 235 (243)
T 3la7_A 191 DLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIH-KKKITVHKP 235 (243)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEECC-
T ss_pred eccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEc-CCEEEECCH
Confidence 3447889999999988 7888999999999999987 788888764
No 227
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=32.05 E-value=12 Score=30.57 Aligned_cols=17 Identities=12% Similarity=-0.097 Sum_probs=13.1
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|-|||||++...
T Consensus 30 l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 30 VFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45668999999998543
No 228
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=31.99 E-value=19 Score=28.43 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=13.8
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+++....
T Consensus 11 l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 11 VLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 566789999999985443
No 229
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=31.96 E-value=19 Score=31.93 Aligned_cols=19 Identities=5% Similarity=-0.153 Sum_probs=14.9
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
-..||-|.||||++.....
T Consensus 9 ~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 9 FLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3678889999999985544
No 230
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=31.88 E-value=1e+02 Score=24.79 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=38.3
Q ss_pred cCCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 247 FFNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 247 fp~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
++-.++...+..+.+.. ......+..|.+.++|... .+.+.++|.
T Consensus 172 ~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~i~d~ 217 (231)
T 3e97_A 172 EVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILEVS-PRSVTLLDL 217 (231)
T ss_dssp TEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-SSCEEESCH
T ss_pred EecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEec-CCEEEEeCH
Confidence 44458899999999988 7888999999999999987 678888875
No 231
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=31.76 E-value=13 Score=34.51 Aligned_cols=14 Identities=14% Similarity=-0.102 Sum_probs=11.6
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|++|.||||++.
T Consensus 104 ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 104 LVGIQGSGKTTTAA 117 (432)
T ss_dssp EECCSSSSTTHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 45668999999977
No 232
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=31.73 E-value=21 Score=28.41 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=13.8
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|.||||+++....
T Consensus 17 l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 17 IIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 566789999999985443
No 233
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=31.71 E-value=15 Score=27.90 Aligned_cols=17 Identities=24% Similarity=0.134 Sum_probs=13.4
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 9 v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 9 MVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56778999999987543
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=31.41 E-value=15 Score=32.68 Aligned_cols=14 Identities=14% Similarity=-0.173 Sum_probs=11.8
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|+.|.||||+++
T Consensus 134 lvG~nGaGKTTll~ 147 (328)
T 3e70_C 134 FVGFNGSGKTTTIA 147 (328)
T ss_dssp EECCTTSSHHHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 56668999999977
No 235
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=31.40 E-value=24 Score=27.19 Aligned_cols=18 Identities=11% Similarity=-0.243 Sum_probs=13.8
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+++..-.
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 5 LIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EESCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 457789999999985433
No 236
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=31.33 E-value=17 Score=31.85 Aligned_cols=17 Identities=18% Similarity=-0.101 Sum_probs=13.2
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|.|||.||....
T Consensus 157 l~G~~GtGKT~La~aia 173 (308)
T 2qgz_A 157 LYGDMGIGKSYLLAAMA 173 (308)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45668999999998544
No 237
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=31.33 E-value=21 Score=28.28 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=13.6
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+++....
T Consensus 14 l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 14 VVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456679999999985443
No 238
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=31.20 E-value=63 Score=25.51 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=34.9
Q ss_pred CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecH
Q 045618 251 QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHD 291 (349)
Q Consensus 251 ~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~ 291 (349)
++...+..+.+.. ......+..|.+.++|... .+++.++|
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~i~d 205 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK-GKTMVVFG 205 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEEEET
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec-CCEEEEEe
Confidence 7889999999988 7888899999999999987 67787765
No 239
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=31.18 E-value=15 Score=35.58 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=10.8
Q ss_pred CCCCCchhhHHHH
Q 045618 17 ATSCGIVKIRRCL 29 (349)
Q Consensus 17 ~~~gGiGKT~la~ 29 (349)
.+-||+||||+|.
T Consensus 14 sgkGGvGKTT~a~ 26 (589)
T 1ihu_A 14 TGKGGVGKTSISC 26 (589)
T ss_dssp ECSTTSSHHHHHH
T ss_pred eCCCcCHHHHHHH
Confidence 4559999999976
No 240
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=31.07 E-value=13 Score=30.20 Aligned_cols=15 Identities=13% Similarity=-0.221 Sum_probs=12.1
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
.+|.+|.||||++..
T Consensus 35 i~G~~g~GKTTl~~~ 49 (221)
T 2wsm_A 35 IMGAIGSGKTLLIER 49 (221)
T ss_dssp EEECTTSCHHHHHHH
T ss_pred EEcCCCCCHHHHHHH
Confidence 556689999999863
No 241
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=30.97 E-value=13 Score=32.64 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=14.5
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
.+..|+.|-||||+++..-
T Consensus 83 igI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4467778999999998443
No 242
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=30.90 E-value=15 Score=29.27 Aligned_cols=16 Identities=13% Similarity=-0.311 Sum_probs=12.5
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|.+|+|||+|....
T Consensus 25 ~vG~~~vGKTsLi~~l 40 (196)
T 3llu_A 25 LMGLRRSGKSSIQKVV 40 (196)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4566899999998743
No 243
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=30.76 E-value=23 Score=28.35 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+++....
T Consensus 20 l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 20 VLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456679999999975443
No 244
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=30.73 E-value=16 Score=27.97 Aligned_cols=17 Identities=12% Similarity=-0.078 Sum_probs=13.3
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
-..|..|.|||+|....
T Consensus 6 ~ivG~~~~GKSsli~~l 22 (169)
T 3q85_A 6 MLVGESGVGKSTLAGTF 22 (169)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 35677899999998743
No 245
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=30.58 E-value=16 Score=27.86 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 8 v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 8 VFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56778999999987443
No 246
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=30.50 E-value=12 Score=33.98 Aligned_cols=13 Identities=8% Similarity=0.345 Sum_probs=10.8
Q ss_pred CCCCCchhhHHHH
Q 045618 17 ATSCGIVKIRRCL 29 (349)
Q Consensus 17 ~~~gGiGKT~la~ 29 (349)
.+-||+||||+|.
T Consensus 8 ~gkGG~GKTt~a~ 20 (374)
T 3igf_A 8 LGKSGVARTKIAI 20 (374)
T ss_dssp ECSBHHHHHHHHH
T ss_pred eCCCCCcHHHHHH
Confidence 4559999999976
No 247
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=30.45 E-value=19 Score=28.32 Aligned_cols=17 Identities=6% Similarity=-0.334 Sum_probs=13.2
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
-..|..|+|||+|++..
T Consensus 18 ~vvG~~~~GKssL~~~l 34 (198)
T 3t1o_A 18 VYYGPGLSGKTTNLKWI 34 (198)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 35677899999998633
No 248
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=30.43 E-value=16 Score=33.03 Aligned_cols=14 Identities=14% Similarity=-0.261 Sum_probs=11.7
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|+.|.||||+++
T Consensus 162 lvG~nGsGKTTll~ 175 (359)
T 2og2_A 162 IVGVNGGGKTTSLG 175 (359)
T ss_dssp EECCTTSCHHHHHH
T ss_pred EEcCCCChHHHHHH
Confidence 55668999999987
No 249
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=30.39 E-value=1.6e+02 Score=24.44 Aligned_cols=56 Identities=20% Similarity=0.114 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHHHHHHHHHHHhh
Q 045618 248 FNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDLLQEMGREIVRQ 303 (349)
Q Consensus 248 p~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~lv~~~a~~~~~~ 303 (349)
+++.+...+....... -.....+..|.+.++|....+++|++-+-+..++......
T Consensus 21 ~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~~l~~~~~~~ 77 (249)
T 1mkm_A 21 PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFVLRR 77 (249)
T ss_dssp SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEECCCCcEEECHHHHHHHHHHHhc
Confidence 3357788888877776 6778889999999999987667899988777776655443
No 250
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=30.31 E-value=16 Score=28.83 Aligned_cols=15 Identities=7% Similarity=-0.301 Sum_probs=12.2
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|..|+|||+|+..
T Consensus 25 ivG~~~vGKSsL~~~ 39 (184)
T 3ihw_A 25 IVGNLSSGKSALVHR 39 (184)
T ss_dssp EECCTTSCHHHHHHH
T ss_pred EECCCCCCHHHHHHH
Confidence 456689999999864
No 251
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=30.19 E-value=24 Score=28.34 Aligned_cols=17 Identities=12% Similarity=-0.082 Sum_probs=13.0
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|.||||+|+...
T Consensus 25 l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 25 LLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45667999999998543
No 252
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=30.13 E-value=16 Score=29.57 Aligned_cols=18 Identities=11% Similarity=-0.197 Sum_probs=13.9
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|+.|.|||+|+....
T Consensus 16 ~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 16 IIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 356778999999987443
No 253
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=30.08 E-value=24 Score=27.96 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=13.7
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+++....
T Consensus 15 l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 15 ITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 566679999999985443
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=29.98 E-value=15 Score=30.74 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=29.8
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+.+.|-.+.=+|+||..-. .. .+..++..+.. ..|..||++|-+..++.
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~g~tvi~vtHd~~~~~ 210 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE-EDGKTVVVVTHDINVAR 210 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHCCEEEEECSCHHHHT
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEcCCHHHHH
Confidence 67777778888899998853 22 22222222210 12667888888776543
No 255
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=29.96 E-value=43 Score=31.69 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=11.8
Q ss_pred CCCceEEEEecCCC
Q 045618 94 RRTKVLIVLDDVNK 107 (349)
Q Consensus 94 ~~~~~LlVlDdv~~ 107 (349)
.++++||++||+..
T Consensus 265 ~G~dVLli~DslTr 278 (515)
T 2r9v_A 265 SGRDALVVYDDLSK 278 (515)
T ss_dssp TTCEEEEEEETHHH
T ss_pred cCCcEEEEeccHHH
Confidence 47899999999853
No 256
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=29.86 E-value=17 Score=27.66 Aligned_cols=17 Identities=6% Similarity=-0.310 Sum_probs=13.3
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|+|||+|.....
T Consensus 5 ~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 5 MVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 46778999999987543
No 257
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=29.83 E-value=15 Score=28.58 Aligned_cols=18 Identities=6% Similarity=-0.230 Sum_probs=13.7
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|+|||+|+....
T Consensus 11 ~~vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 11 GVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp EEECCGGGCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 356778999999987443
No 258
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=29.79 E-value=17 Score=30.90 Aligned_cols=17 Identities=12% Similarity=-0.158 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|-||||+|+...
T Consensus 9 l~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 9 LTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHH
Confidence 56778999999998543
No 259
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=29.71 E-value=12 Score=34.68 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=16.3
Q ss_pred hcccCCCCCchhhHHHHHHhh
Q 045618 13 ELNRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~~~f~ 33 (349)
.+..+|+.|.|||||....+.
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 345778899999999985554
No 260
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=29.53 E-value=18 Score=27.66 Aligned_cols=18 Identities=11% Similarity=-0.075 Sum_probs=13.8
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|.|||+|.....
T Consensus 10 ~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 10 CLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHH
Confidence 356778999999987443
No 261
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=29.46 E-value=14 Score=31.60 Aligned_cols=15 Identities=20% Similarity=0.031 Sum_probs=12.0
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|+.|.||||++..
T Consensus 35 i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 35 LVSPGGAGKSMLALQ 49 (279)
T ss_dssp EEESTTSSHHHHHHH
T ss_pred EEcCCCCCHHHHHHH
Confidence 455679999999884
No 262
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=29.44 E-value=15 Score=28.03 Aligned_cols=16 Identities=13% Similarity=-0.010 Sum_probs=12.8
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|..|.|||+|....
T Consensus 7 ~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 7 LLGAPGVGKSALARIF 22 (166)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5677899999998743
No 263
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=29.43 E-value=22 Score=29.04 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=13.7
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+++....
T Consensus 10 l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 10 ISGAPASGKGTQCELIKT 27 (222)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456789999999985443
No 264
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=29.17 E-value=18 Score=27.55 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=13.3
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 8 v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 8 VLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56778999999987543
No 265
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=29.16 E-value=18 Score=28.00 Aligned_cols=18 Identities=11% Similarity=-0.073 Sum_probs=13.8
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
.-..|..|.|||+|....
T Consensus 11 i~v~G~~~~GKSsli~~l 28 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRY 28 (182)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 345677899999998743
No 266
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=29.15 E-value=18 Score=28.62 Aligned_cols=17 Identities=12% Similarity=-0.121 Sum_probs=13.3
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
-..|..|+|||+|+...
T Consensus 25 ~vvG~~~vGKTsLi~~l 41 (187)
T 3c5c_A 25 AILGRRGAGKSALTVKF 41 (187)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 35677899999998743
No 267
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=29.12 E-value=18 Score=27.67 Aligned_cols=18 Identities=11% Similarity=-0.184 Sum_probs=13.8
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|.|||+|.....
T Consensus 10 ~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 10 VLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHH
Confidence 356778999999987443
No 268
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=29.09 E-value=18 Score=28.29 Aligned_cols=18 Identities=11% Similarity=-0.053 Sum_probs=13.6
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-|||||.+....
T Consensus 38 L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 38 LNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456679999999885443
No 269
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=29.05 E-value=1.5e+02 Score=20.89 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=47.9
Q ss_pred HHHHHHHhHhcCChhHHHHHHHhcccCCCCCHHHHHH-Hhccc-ccHHHhHHHHhhCcceEEcCCCeEEec
Q 045618 222 IYDVLKISYNEIKAEEKSLFLDIACFFNGQDKDSVLK-MIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMH 290 (349)
Q Consensus 222 l~~~l~~s~~~L~~~~~~~f~~la~fp~~~~~~~l~~-~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH 290 (349)
+..+.+.+=..|+...-.++..++-.| ..+...+.. ....+ ......++.|.+.|||+.+.++ +.+=
T Consensus 3 ~~~~~~~~~~~L~~~QfsiL~~L~~~~-~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe~~~~D-l~LT 71 (95)
T 1bja_A 3 VTYIIKASNDVLNEKTATILITIAKKD-FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVEKSGDG-LIIT 71 (95)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHST-TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEEEETTE-EEEC
T ss_pred chhhhhHHhcCCCHHHHHHHHHHHHCC-CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCeecCCCC-eeeC
Confidence 344455555678888888888887776 788888888 55555 5677789999999999944343 5443
No 270
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=29.02 E-value=12 Score=32.67 Aligned_cols=17 Identities=12% Similarity=-0.060 Sum_probs=11.2
Q ss_pred cccCCCCCchhhHHHHH
Q 045618 14 LNRATSCGIVKIRRCLM 30 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~ 30 (349)
....|+.|-||||+|+.
T Consensus 8 IgItG~sGSGKSTva~~ 24 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHT 24 (290)
T ss_dssp EEEESCC---CCTHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45678899999999984
No 271
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=28.98 E-value=1.4e+02 Score=23.12 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=37.6
Q ss_pred HHHHHHHhcccCCC-CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC
Q 045618 237 EKSLFLDIACFFNG-QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR 283 (349)
Q Consensus 237 ~~~~f~~la~fp~~-~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~ 283 (349)
.-+++.+++..++. ++...+....... ......+..|.+.++|....
T Consensus 14 Alr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~r 62 (162)
T 3k69_A 14 AVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTV 62 (162)
T ss_dssp HHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEEC
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 45677888887654 8888888888777 77888999999999998654
No 272
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=28.95 E-value=17 Score=32.55 Aligned_cols=19 Identities=11% Similarity=-0.080 Sum_probs=15.1
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
....|+.|.||||+|....
T Consensus 10 I~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCcCcHHHHHHHHH
Confidence 4577889999999998443
No 273
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=28.94 E-value=16 Score=29.46 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=16.4
Q ss_pred cCCCCCchhhHHHHHHhhhhcceeeccc
Q 045618 16 RATSCGIVKIRRCLMVFRLCSTECLSEA 43 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~~~~w~~~~~~ 43 (349)
..|+.|.||||+|...-. +-|.-+++.
T Consensus 21 i~G~SGaGKStlal~L~~-rG~~lvaDD 47 (181)
T 3tqf_A 21 ITGEANIGKSELSLALID-RGHQLVCDD 47 (181)
T ss_dssp EEESSSSSHHHHHHHHHH-TTCEEEESS
T ss_pred EEcCCCCCHHHHHHHHHH-cCCeEecCC
Confidence 346689999999974322 334444444
No 274
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=28.86 E-value=16 Score=28.81 Aligned_cols=18 Identities=6% Similarity=-0.298 Sum_probs=13.7
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
.-..|..|+|||+|....
T Consensus 19 i~ivG~~~vGKSsL~~~l 36 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQL 36 (181)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 345666899999998744
No 275
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=28.79 E-value=18 Score=27.54 Aligned_cols=17 Identities=12% Similarity=-0.040 Sum_probs=13.1
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 8 v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 8 LLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHh
Confidence 46778999999987443
No 276
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=28.72 E-value=16 Score=28.77 Aligned_cols=18 Identities=6% Similarity=-0.260 Sum_probs=13.8
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|+|||+|+....
T Consensus 11 ~v~G~~~vGKSsli~~l~ 28 (184)
T 1m7b_A 11 VVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 356778999999987443
No 277
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=28.72 E-value=24 Score=31.20 Aligned_cols=19 Identities=5% Similarity=-0.162 Sum_probs=14.9
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
-..||.|.|||+||.....
T Consensus 14 ~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 14 FLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCccCHHHHHHHHHH
Confidence 3678899999999985443
No 278
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=28.64 E-value=2e+02 Score=24.04 Aligned_cols=67 Identities=7% Similarity=-0.038 Sum_probs=50.1
Q ss_pred HHHHHHhcccC---CCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHHHHHHHHHHHhhh
Q 045618 238 KSLFLDIACFF---NGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDLLQEMGREIVRQE 304 (349)
Q Consensus 238 ~~~f~~la~fp---~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~lv~~~a~~~~~~e 304 (349)
.+.+..|.+|. ++.....+.....-. -.+...+..|.+.++|....+++|++-+-+.+++.......
T Consensus 23 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~~Y~lg~~~~~lg~~~~~~~ 93 (260)
T 2o0y_A 23 TRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADGSYSLGPEMLRWVRLAGRTW 93 (260)
T ss_dssp HHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCeEEecHHHHHHHHHHHccC
Confidence 34444445553 348888888888777 67888899999999999876568999888888877665544
No 279
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=28.64 E-value=19 Score=27.74 Aligned_cols=18 Identities=6% Similarity=-0.282 Sum_probs=13.8
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|.|||+|.....
T Consensus 12 ~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 12 TIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp EEESCTTTTHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 356778999999987543
No 280
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=28.61 E-value=18 Score=29.85 Aligned_cols=16 Identities=6% Similarity=-0.280 Sum_probs=12.9
Q ss_pred ccCCCCCchhhHHHHH
Q 045618 15 NRATSCGIVKIRRCLM 30 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~ 30 (349)
-.+|.+|+|||+|+..
T Consensus 17 vlvGd~~VGKTsLi~r 32 (216)
T 4dkx_A 17 VFLGEQSVGKTSLITR 32 (216)
T ss_dssp EEECSTTSSHHHHHHH
T ss_pred EEECcCCcCHHHHHHH
Confidence 3567789999999873
No 281
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=28.42 E-value=18 Score=28.81 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=13.5
Q ss_pred cccCCCCCchhhHHHHH
Q 045618 14 LNRATSCGIVKIRRCLM 30 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~ 30 (349)
+-.+|..|+|||+|...
T Consensus 9 v~lvG~~~vGKSsL~~~ 25 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANI 25 (192)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34677789999999864
No 282
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=28.38 E-value=24 Score=29.04 Aligned_cols=17 Identities=12% Similarity=-0.212 Sum_probs=13.4
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|.||||+++...
T Consensus 12 l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 12 IMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp EEECTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56678999999998543
No 283
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=28.32 E-value=21 Score=32.08 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=13.7
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|.|||++|+....
T Consensus 77 l~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 77 LIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456679999999985543
No 284
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=28.32 E-value=15 Score=30.51 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=29.7
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEEEEEeCcchhh
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRIIVTTRDRRVL 137 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~ 137 (349)
.+...|-.+.-+++||..-. .. .+..++..+. ..|..||++|.+...+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN--EGGTSIVMVTHERELA 203 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHH
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEcCCHHHH
Confidence 67777888888999998753 22 2222322222 1266788888876654
No 285
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=28.32 E-value=79 Score=25.11 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=36.7
Q ss_pred CCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 250 GQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 250 ~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
.++...+..+.+.. ......+.+|.+.++|... .+.+.+.|.
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~i~d~ 205 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLG-PGTVEVREA 205 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEEESCH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec-CCEEEEeCH
Confidence 37899999999988 7888899999999999986 788888874
No 286
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=28.30 E-value=20 Score=28.49 Aligned_cols=16 Identities=13% Similarity=-0.064 Sum_probs=12.9
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+-|-||||+++..
T Consensus 5 l~G~~GsGKsT~~~~L 20 (197)
T 2z0h_A 5 FEGIDGSGKSTQIQLL 20 (197)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4577899999999844
No 287
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=28.28 E-value=17 Score=29.30 Aligned_cols=18 Identities=11% Similarity=0.016 Sum_probs=14.4
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
....|+-|-||||+++..
T Consensus 5 i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEECSTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 346788899999999854
No 288
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=28.27 E-value=18 Score=33.66 Aligned_cols=14 Identities=14% Similarity=-0.102 Sum_probs=11.3
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.+|++|.||||++.
T Consensus 105 ivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 105 MVGIQGSGKTTTVA 118 (443)
T ss_dssp EECCTTSSHHHHHH
T ss_pred EECcCCCCHHHHHH
Confidence 45668999999976
No 289
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=28.27 E-value=17 Score=30.48 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=31.4
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHccc---CCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGL---ERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~---~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+.+.|-.+.-+++||..-. ......+...+ .....+..||++|.+.....
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence 66677777888999999863 33233333333 11134677888888766544
No 290
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=28.24 E-value=20 Score=28.79 Aligned_cols=16 Identities=13% Similarity=-0.024 Sum_probs=12.9
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+-|.||||+++..
T Consensus 9 i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 9 FEGIDGSGKSSQATLL 24 (213)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 5667899999999843
No 291
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=28.19 E-value=20 Score=29.99 Aligned_cols=18 Identities=17% Similarity=-0.046 Sum_probs=14.1
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
...|+-|-||||+++...
T Consensus 31 ~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 31 VILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 356778999999998544
No 292
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=27.87 E-value=19 Score=27.71 Aligned_cols=19 Identities=11% Similarity=-0.141 Sum_probs=14.4
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
.-..|..|.|||+|.....
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3456778999999987443
No 293
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=27.83 E-value=20 Score=27.17 Aligned_cols=16 Identities=19% Similarity=0.030 Sum_probs=12.8
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|..|.|||+|....
T Consensus 8 v~G~~~~GKSsli~~l 23 (167)
T 1kao_A 8 VLGSGGVGKSALTVQF 23 (167)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5677899999998643
No 294
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=27.73 E-value=18 Score=34.29 Aligned_cols=15 Identities=13% Similarity=-0.082 Sum_probs=12.2
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
.+|+.|.||||+++.
T Consensus 298 LVGpNGSGKTTLl~~ 312 (503)
T 2yhs_A 298 MVGVNGVGKTTTIGK 312 (503)
T ss_dssp EECCTTSSHHHHHHH
T ss_pred EECCCcccHHHHHHH
Confidence 556689999999874
No 295
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=27.70 E-value=19 Score=27.49 Aligned_cols=18 Identities=11% Similarity=-0.265 Sum_probs=13.7
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|.|||+|.....
T Consensus 11 ~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 11 LILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 356778999999987543
No 296
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=27.65 E-value=19 Score=31.56 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=17.1
Q ss_pred EEEcCCCChHhHHHHHHHhhc
Q 045618 145 IYKVNGLKYREALELFCNCAF 165 (349)
Q Consensus 145 ~~~l~~L~~~ea~~L~~~~a~ 165 (349)
.+.+++++.++-.+++.....
T Consensus 179 ~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 179 KIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp EEECCCCCHHHHHHHHHHHHC
T ss_pred EEEcCCCCHHHHHHHHHhccc
Confidence 588889999988888887763
No 297
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=27.65 E-value=31 Score=26.64 Aligned_cols=18 Identities=11% Similarity=-0.293 Sum_probs=13.6
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+++..-.
T Consensus 12 l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 12 LIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EESCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456679999999985433
No 298
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=27.40 E-value=1.4e+02 Score=27.81 Aligned_cols=12 Identities=17% Similarity=0.038 Sum_probs=9.9
Q ss_pred CCchhhHHHHHH
Q 045618 20 CGIVKIRRCLMV 31 (349)
Q Consensus 20 gGiGKT~la~~~ 31 (349)
-|+|||+++...
T Consensus 251 pG~GKT~lal~~ 262 (503)
T 1q57_A 251 SGMVMSTFVRQQ 262 (503)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCCCchHHHHHH
Confidence 599999999743
No 299
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=27.38 E-value=19 Score=30.39 Aligned_cols=49 Identities=18% Similarity=0.071 Sum_probs=28.9
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEEEEEeCcchhh
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRIIVTTRDRRVL 137 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~ 137 (349)
.+.+.|-.+.-+++||..-. .. .+..++..+.. ..|..||++|.+...+
T Consensus 136 ~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~~g~tvi~vtHd~~~~ 190 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR-EFDVPILHVTHDLIEA 190 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH-HHTCCEEEEESCHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHH
Confidence 67778888888999999753 22 22222222210 1255688888876543
No 300
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=27.35 E-value=19 Score=30.82 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=29.3
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+.+.|-.+.=+|+||..-. .. .+..++..+. ..|..||++|.+...+.
T Consensus 163 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~~ 217 (262)
T 1b0u_A 163 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA--EEGKTMVVVTHEMGFAR 217 (262)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HTTCCEEEECSCHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH
Confidence 66777777888999999853 22 2223333322 12556888888765443
No 301
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=27.31 E-value=25 Score=31.41 Aligned_cols=19 Identities=16% Similarity=-0.001 Sum_probs=14.7
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
-..||-|.|||+|+.....
T Consensus 44 vI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 44 VLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEECSTTSSHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 3677789999999985443
No 302
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=27.25 E-value=17 Score=31.46 Aligned_cols=15 Identities=13% Similarity=0.029 Sum_probs=11.4
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|+-|.||||++..
T Consensus 40 i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 40 VTSGSGMGKSTFVRQ 54 (296)
T ss_dssp EEESTTSSHHHHHHH
T ss_pred EEeCCCCCHHHHHHH
Confidence 344469999999884
No 303
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=27.18 E-value=18 Score=32.33 Aligned_cols=16 Identities=13% Similarity=-0.033 Sum_probs=12.7
Q ss_pred cccCCCCCchhhHHHH
Q 045618 14 LNRATSCGIVKIRRCL 29 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~ 29 (349)
...+|.+|.||||++.
T Consensus 82 I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 82 VGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3456669999999986
No 304
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=27.15 E-value=19 Score=31.12 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=31.2
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEEEEEeCcchhhcc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRIIVTTRDRRVLDN 139 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~ 139 (349)
.+...|..+.-+|+||..-. .. .+..++..+.. ..|..||++|-+...+..
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~-~~g~tvi~vtHdl~~~~~ 209 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK-ELGITIIIATHDIDIVPL 209 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HHCCEEEEEESCCSSGGG
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHh-hCCCEEEEEecCHHHHHH
Confidence 77888888999999999853 22 22222222210 126678888877655443
No 305
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=27.13 E-value=29 Score=29.13 Aligned_cols=17 Identities=12% Similarity=-0.128 Sum_probs=13.8
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|-||||+++..-
T Consensus 14 i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 14 VDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56778999999998544
No 306
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=27.12 E-value=30 Score=28.06 Aligned_cols=17 Identities=6% Similarity=-0.234 Sum_probs=12.9
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|-||||+++...
T Consensus 30 ~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 30 LTGLSASGKSTLAVELE 46 (211)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 35567999999998543
No 307
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=27.08 E-value=31 Score=28.08 Aligned_cols=18 Identities=11% Similarity=-0.158 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+++....
T Consensus 9 l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 9 LIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456679999999985433
No 308
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=27.00 E-value=21 Score=27.53 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=13.6
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|.|||+|.....
T Consensus 13 ~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 13 VVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 356678999999987543
No 309
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=26.85 E-value=21 Score=27.56 Aligned_cols=17 Identities=6% Similarity=-0.291 Sum_probs=13.3
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
-..|..|.|||+|....
T Consensus 10 ~v~G~~~~GKssl~~~l 26 (178)
T 2hxs_A 10 VVLGDGASGKTSLTTCF 26 (178)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHH
Confidence 35677899999998743
No 310
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=26.79 E-value=11 Score=30.65 Aligned_cols=16 Identities=13% Similarity=-0.189 Sum_probs=12.5
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|-||||++...
T Consensus 5 i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 5 IEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 4566799999999843
No 311
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=26.57 E-value=21 Score=27.54 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=13.8
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
.-..|..|.|||+|....
T Consensus 12 i~v~G~~~~GKssl~~~l 29 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRF 29 (181)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 345677899999998743
No 312
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=26.55 E-value=21 Score=27.69 Aligned_cols=17 Identities=6% Similarity=-0.146 Sum_probs=13.2
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 13 v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 13 TVGDGAVGKTCLLISYT 29 (182)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHh
Confidence 56778999999987443
No 313
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=26.54 E-value=18 Score=29.78 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=23.7
Q ss_pred HHHhCCCceEEEEecCCCc--hhHHHHHcccCCCCCCcEEEEEeCcch
Q 045618 90 RERLRRTKVLIVLDDVNKV--GQLEYLIGGLERFGPGSRIIVTTRDRR 135 (349)
Q Consensus 90 ~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IlvTTR~~~ 135 (349)
.+.|....-+|+||..-.. ..+..++..+ ..+..|| +|.+..
T Consensus 116 AraL~~~p~lllLDEPts~~~~~l~~~l~~l---~~g~tii-vtHd~~ 159 (208)
T 3b85_A 116 MRGRTLNDAFVILDEAQNTTPAQMKMFLTRL---GFGSKMV-VTGDIT 159 (208)
T ss_dssp GTTCCBCSEEEEECSGGGCCHHHHHHHHTTB---CTTCEEE-EEEC--
T ss_pred HHHHhcCCCEEEEeCCccccHHHHHHHHHHh---cCCCEEE-EECCHH
Confidence 3444556789999998643 2333444433 3466777 776543
No 314
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=26.52 E-value=17 Score=28.51 Aligned_cols=17 Identities=12% Similarity=-0.115 Sum_probs=13.3
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 6 v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 6 FAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEBTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHh
Confidence 45778999999987543
No 315
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=26.48 E-value=21 Score=28.81 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=14.4
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
.-..|..|.|||+|.....
T Consensus 10 i~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 10 VLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3466778999999987443
No 316
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=26.41 E-value=25 Score=27.04 Aligned_cols=19 Identities=11% Similarity=-0.183 Sum_probs=14.2
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
.-..|..|.|||+|.....
T Consensus 18 i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3356778999999987543
No 317
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=26.36 E-value=19 Score=30.40 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=30.9
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEEEEEeCcchhhcc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRIIVTTRDRRVLDN 139 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~ 139 (349)
.+.+.|-.+.-+|+||..-. .. .+..++..+. ..|..||++|.+...+..
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~ 208 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR--GPNFGALVITHYQRILNY 208 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHC--STTCEEEEECSSSGGGGT
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--hcCCEEEEEecCHHHHHH
Confidence 66677777888999998752 22 2333333332 236678888887665543
No 318
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=26.27 E-value=33 Score=28.71 Aligned_cols=17 Identities=18% Similarity=-0.107 Sum_probs=13.0
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|.||||+|+...
T Consensus 34 l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 34 FLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45667999999998543
No 319
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=26.27 E-value=21 Score=27.10 Aligned_cols=17 Identities=12% Similarity=-0.044 Sum_probs=13.2
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 11 v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 11 LLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56778999999987443
No 320
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=26.26 E-value=24 Score=31.51 Aligned_cols=18 Identities=17% Similarity=-0.057 Sum_probs=13.8
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|.|||++|+....
T Consensus 56 l~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 56 LIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 346679999999986544
No 321
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=26.20 E-value=18 Score=28.66 Aligned_cols=18 Identities=11% Similarity=-0.328 Sum_probs=13.6
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|+|||+|.....
T Consensus 27 ~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 27 LFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 356668999999987443
No 322
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=26.18 E-value=89 Score=24.98 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=37.8
Q ss_pred cCCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 247 FFNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 247 fp~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
++-.++...+..+.+.. ......+..|.+.++|...+.+.+.++|.
T Consensus 164 ~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~~i~i~d~ 210 (220)
T 2fmy_A 164 LELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLKDL 210 (220)
T ss_dssp EECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEESCH
T ss_pred EeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCCEEEEcCH
Confidence 34458899999999988 78888999999999999852458888774
No 323
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=26.17 E-value=16 Score=29.38 Aligned_cols=17 Identities=12% Similarity=-0.267 Sum_probs=13.0
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
...|..|.|||+|....
T Consensus 29 ~lvG~~~vGKSsLi~~l 45 (198)
T 1f6b_A 29 VFLGLDNAGKTTLLHML 45 (198)
T ss_dssp EEEEETTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 35566899999998743
No 324
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=26.15 E-value=20 Score=30.14 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=29.4
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEEEEEeCcchhh
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRIIVTTRDRRVL 137 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~ 137 (349)
.+.+.|-.+.-+|+||..-. .. .+..++..+. ..|..||++|.+...+
T Consensus 149 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~--~~g~tvi~vtHd~~~~ 202 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN--QEGTTILLVEQNALGA 202 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHH
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHH
Confidence 67788888888999999853 22 2222332222 1355678888776443
No 325
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=26.13 E-value=21 Score=27.74 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=13.7
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|.|||+|.....
T Consensus 22 ~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 22 VVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 356668999999987544
No 326
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=26.04 E-value=20 Score=30.72 Aligned_cols=16 Identities=13% Similarity=-0.066 Sum_probs=12.8
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|-|||||.+..
T Consensus 42 liG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 42 IIGPNGAGKSTLLRLL 57 (266)
T ss_dssp EECCTTSCHHHHHHHH
T ss_pred EECCCCCcHHHHHHHH
Confidence 5677899999998843
No 327
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=25.96 E-value=22 Score=27.83 Aligned_cols=19 Identities=11% Similarity=-0.038 Sum_probs=14.2
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
+-..|..|.|||+|+....
T Consensus 14 i~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3456778999999987443
No 328
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=25.89 E-value=22 Score=27.65 Aligned_cols=16 Identities=6% Similarity=-0.147 Sum_probs=12.8
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|..|.|||+|....
T Consensus 10 ~~G~~~~GKssl~~~l 25 (186)
T 1mh1_A 10 VVGDGAVGKTCLLISY 25 (186)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5677899999998643
No 329
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=25.87 E-value=19 Score=31.66 Aligned_cols=18 Identities=11% Similarity=-0.141 Sum_probs=13.4
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|.|||++|+....
T Consensus 50 l~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 50 VFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp EECCGGGCTTHHHHHHHH
T ss_pred EECCCCccHHHHHHHHHH
Confidence 345679999999985443
No 330
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=25.86 E-value=21 Score=30.62 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=30.8
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+...|-.+.-+|+||..-. .. .+..++..+. ..|..||++|.+...+.
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~~ 223 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA--NEGMTMVVVTHEMGFAR 223 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHHH
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEcCCHHHHH
Confidence 67778888888999999853 22 2233333322 12667888888865544
No 331
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=25.80 E-value=39 Score=17.28 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.1
Q ss_pred CCCchHHHHHhHHhcc
Q 045618 186 NGNPLAVRVLGSFLRQ 201 (349)
Q Consensus 186 ~glPLAl~~~a~~l~~ 201 (349)
.-+|||+.++++.+..
T Consensus 9 rklplavav~agv~~a 24 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCTHHHHHHHHTTCC
T ss_pred ccCchHHHHHHHHhHh
Confidence 4589999999987764
No 332
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=25.79 E-value=20 Score=30.44 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=30.1
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+...|-.+.-+|+||..-. .. .+..++..+. ..|..||++|.+.+.+.
T Consensus 163 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~ 217 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK--AKGITFLIIEHRLDIVL 217 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCCSTTG
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHH
Confidence 66677777888999999853 22 2233333322 22667888888765543
No 333
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=25.77 E-value=22 Score=28.30 Aligned_cols=17 Identities=24% Similarity=0.134 Sum_probs=13.2
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 19 v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 19 MVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56778999999987443
No 334
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=25.74 E-value=21 Score=30.06 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=30.0
Q ss_pred HHHHHhCCCceEEEEecCC------CchhHHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVN------KVGQLEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~------~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+.+.|-.+.-+++||..- ....+..++..+. .+..||++|.+.....
T Consensus 149 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~---~~~tvi~vtH~~~~~~ 202 (243)
T 1mv5_A 149 AIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM---KGRTTLVIAHRLSTIV 202 (243)
T ss_dssp HHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH---TTSEEEEECCSHHHHH
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc---CCCEEEEEeCChHHHH
Confidence 6666666777899999874 2233333333332 3667888888766544
No 335
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=25.69 E-value=21 Score=30.16 Aligned_cols=18 Identities=17% Similarity=0.087 Sum_probs=14.5
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
...|+.|-||||+++...
T Consensus 31 ~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 31 TVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 467778999999998554
No 336
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=25.64 E-value=22 Score=27.47 Aligned_cols=17 Identities=18% Similarity=-0.042 Sum_probs=13.2
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
-..|..|.|||+|....
T Consensus 16 ~v~G~~~~GKSsli~~l 32 (181)
T 2efe_B 16 VLLGDVGAGKSSLVLRF 32 (181)
T ss_dssp EEECCTTSCHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHH
Confidence 35677899999998744
No 337
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=25.63 E-value=22 Score=32.95 Aligned_cols=14 Identities=14% Similarity=-0.109 Sum_probs=11.6
Q ss_pred cCCCCCchhhHHHH
Q 045618 16 RATSCGIVKIRRCL 29 (349)
Q Consensus 16 ~~~~gGiGKT~la~ 29 (349)
.++++|.||||++.
T Consensus 103 i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 103 LVGLQGSGKTTTAA 116 (425)
T ss_dssp EECCTTSSHHHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 44679999999977
No 338
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=25.57 E-value=23 Score=27.63 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=13.5
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 9 v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 9 VVGADGVGKSALTIQLI 25 (189)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56778999999987544
No 339
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=25.56 E-value=22 Score=27.57 Aligned_cols=17 Identities=24% Similarity=0.134 Sum_probs=13.2
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|+....
T Consensus 23 v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 23 MVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHh
Confidence 55668999999987543
No 340
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=25.56 E-value=21 Score=30.22 Aligned_cols=48 Identities=8% Similarity=0.202 Sum_probs=30.5
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+.+.|-.+.-+|+||..-. .. .+..++..+ ..|..||++|-+.....
T Consensus 155 ~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~---~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI---CKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH---HTTSEEEEECSSGGGGT
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---cCCCEEEEEeCCHHHHH
Confidence 77777888888999999863 22 222333332 23667888888766544
No 341
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=25.50 E-value=21 Score=30.72 Aligned_cols=16 Identities=13% Similarity=-0.126 Sum_probs=0.0
Q ss_pred cccCCCCCchhhHHHH
Q 045618 14 LNRATSCGIVKIRRCL 29 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~ 29 (349)
....|+.|-|||||.+
T Consensus 48 ~~i~G~nGsGKSTLlk 63 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAA 63 (271)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
No 342
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=25.37 E-value=21 Score=30.46 Aligned_cols=48 Identities=8% Similarity=0.236 Sum_probs=29.5
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+.+.|-.++=+|+||..-. .. .+..++..+. .+..||++|.+.....
T Consensus 165 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~---~~~tviivtH~~~~~~ 218 (260)
T 2ghi_A 165 AIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR---KNRTLIIIAHRLSTIS 218 (260)
T ss_dssp HHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT---TTSEEEEECSSGGGST
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc---CCCEEEEEcCCHHHHH
Confidence 66667777788999999853 22 2233333332 3567888888766543
No 343
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=25.32 E-value=21 Score=32.08 Aligned_cols=19 Identities=5% Similarity=-0.277 Sum_probs=14.6
Q ss_pred hcccCCCCCchhhHHHHHH
Q 045618 13 ELNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~~~ 31 (349)
+...+|+.|-|||||++..
T Consensus 172 k~~IvG~nGsGKSTLlk~L 190 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKL 190 (365)
T ss_dssp EEEEECCTTSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3446678899999999844
No 344
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=25.29 E-value=1.5e+02 Score=22.94 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=43.9
Q ss_pred hHHHHHHHhcccCCC--CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC--CCe---------EEecHHHHHH
Q 045618 236 EEKSLFLDIACFFNG--QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR--GNQ---------LQMHDLLQEM 296 (349)
Q Consensus 236 ~~~~~f~~la~fp~~--~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~--~~~---------~~mH~lv~~~ 296 (349)
..-+++.++|..+++ .+.+.+....... ...+..+..|.+.+||.... +|. +++-|+++.+
T Consensus 28 yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~eItL~dVi~av 102 (159)
T 3lwf_A 28 YGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDIIRTL 102 (159)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCTTTCBHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCHHHCCHHHHHHHH
Confidence 345667788876543 7888888877776 67888999999999999654 233 5666666543
No 345
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=25.26 E-value=21 Score=28.00 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=9.4
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|-||||+|+...
T Consensus 10 l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 10 INGPFGVGKTHTAHTLH 26 (183)
T ss_dssp EECCC----CHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45667999999998543
No 346
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=25.26 E-value=20 Score=29.40 Aligned_cols=17 Identities=12% Similarity=-0.023 Sum_probs=13.4
Q ss_pred cccCCCCCchhhHHHHH
Q 045618 14 LNRATSCGIVKIRRCLM 30 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~ 30 (349)
+-.+|..|+|||+|...
T Consensus 40 VvlvG~~~vGKSSLl~r 56 (211)
T 2g3y_A 40 VVLIGEQGVGKSTLANI 56 (211)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44667789999999874
No 347
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=25.22 E-value=23 Score=28.07 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=13.0
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|+|||+|+....
T Consensus 33 v~G~~~vGKSsli~~l~ 49 (196)
T 2atv_A 33 IFGRAGVGKSALVVRFL 49 (196)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45668999999987443
No 348
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=25.18 E-value=1.1e+02 Score=24.14 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=34.7
Q ss_pred CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecH
Q 045618 251 QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHD 291 (349)
Q Consensus 251 ~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~ 291 (349)
++...+..+.+.. ......+.+|.+.++|... .+++.+.|
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~i~d 208 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKMLEDQNLISAH-GKTIVVYG 208 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEEEC
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeC-CCEEEEEe
Confidence 7889999999888 7888899999999999987 67777765
No 349
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=25.08 E-value=22 Score=29.37 Aligned_cols=49 Identities=16% Similarity=0.088 Sum_probs=30.1
Q ss_pred HHHHHhCCCceEEEEecCCC------chhHHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK------VGQLEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~------~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+...|-..+-+++||..-. ...+..++..+. ..|..||++|.+...+.
T Consensus 143 ~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~--~~g~tiiivtHd~~~~~ 197 (214)
T 1sgw_A 143 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL--KEKGIVIISSREELSYC 197 (214)
T ss_dssp HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--HHHSEEEEEESSCCTTS
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH
Confidence 67778888888999998752 223333333322 12556888887765433
No 350
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=25.03 E-value=22 Score=30.16 Aligned_cols=17 Identities=12% Similarity=-0.089 Sum_probs=13.4
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
...|+.|-|||||.+..
T Consensus 30 ~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 30 HLVGPNGAGKSTLLARM 46 (249)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 35677899999998843
No 351
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=25.02 E-value=20 Score=27.30 Aligned_cols=18 Identities=11% Similarity=-0.077 Sum_probs=13.7
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|.|||+|.....
T Consensus 7 ~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 7 LLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHH
Confidence 356778999999987443
No 352
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=25.02 E-value=24 Score=27.79 Aligned_cols=17 Identities=12% Similarity=0.002 Sum_probs=13.1
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|-||||+++...
T Consensus 5 l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 5 FEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp EECSTTSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45677999999998443
No 353
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=24.95 E-value=21 Score=29.96 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=13.8
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
....|+.|-||||+|+..
T Consensus 25 I~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKI 42 (252)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 346677899999999843
No 354
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=24.88 E-value=22 Score=28.04 Aligned_cols=17 Identities=12% Similarity=-0.105 Sum_probs=13.1
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 28 v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 28 LAGRSNVGKSSFINSLI 44 (195)
T ss_dssp EEEBTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHh
Confidence 55668999999987543
No 355
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=24.82 E-value=20 Score=29.54 Aligned_cols=15 Identities=13% Similarity=-0.168 Sum_probs=11.4
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..|+.|.|||+++..
T Consensus 28 i~G~~GsGKTtl~~~ 42 (247)
T 2dr3_A 28 LSGGPGTGKTIFSQQ 42 (247)
T ss_dssp EEECTTSSHHHHHHH
T ss_pred EECCCCCCHHHHHHH
Confidence 345579999999863
No 356
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=24.82 E-value=22 Score=31.97 Aligned_cols=15 Identities=13% Similarity=-0.226 Sum_probs=11.6
Q ss_pred cCCCCCchhhHHHHH
Q 045618 16 RATSCGIVKIRRCLM 30 (349)
Q Consensus 16 ~~~~gGiGKT~la~~ 30 (349)
..++.|.|||++|..
T Consensus 68 I~G~pGsGKTtLal~ 82 (356)
T 1u94_A 68 IYGPESSGKTTLTLQ 82 (356)
T ss_dssp EECSTTSSHHHHHHH
T ss_pred EECCCCCCHHHHHHH
Confidence 345579999999873
No 357
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=24.79 E-value=36 Score=27.89 Aligned_cols=17 Identities=18% Similarity=-0.150 Sum_probs=13.3
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|.||||+++...
T Consensus 5 l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 5 IFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EECCTTSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45778999999998543
No 358
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=24.75 E-value=22 Score=30.25 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=31.5
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEEEEEeCcchhhcc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRIIVTTRDRRVLDN 139 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~ 139 (349)
.+...|-...-+|+||..-. .. .+..++..+. ..|..||++|.+...+..
T Consensus 156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tiiivtHd~~~~~~ 211 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS--QEGLTILVSSHNMLEVEF 211 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEEECCHHHHTT
T ss_pred HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH--hCCCEEEEEcCCHHHHHH
Confidence 77778888888999999853 22 2223333222 236678888888655443
No 359
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=24.72 E-value=24 Score=28.12 Aligned_cols=19 Identities=11% Similarity=-0.075 Sum_probs=14.3
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
.-..|..|.|||+|.....
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 3466778999999987443
No 360
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=24.64 E-value=24 Score=28.08 Aligned_cols=17 Identities=6% Similarity=-0.136 Sum_probs=13.0
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|+|||+|.....
T Consensus 25 ~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 25 LVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 55668999999987443
No 361
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=24.62 E-value=22 Score=29.55 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=31.6
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcc-cCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGG-LERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~-~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+.+.|-.+.-+++||..-. ......+... +.....+..||++|.+.....
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~ 194 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 194 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH
Confidence 66777777888999999863 3333334332 222233667888888765543
No 362
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=24.60 E-value=1.9e+02 Score=20.58 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=36.3
Q ss_pred ccCCC--C-CHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 246 CFFNG--Q-DKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 246 ~fp~~--~-~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
-|+.+ + +...+...+... .....++..|.+.++|....+..+.+.+.
T Consensus 26 ~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~G~~V~~~ 76 (113)
T 3tqn_A 26 SYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGLGMLVKAG 76 (113)
T ss_dssp SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECTT
T ss_pred CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCeEEEeCC
Confidence 44444 5 678888888888 88899999999999999876555555543
No 363
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=24.59 E-value=29 Score=31.90 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=13.9
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..||.|.|||+||....
T Consensus 7 i~GptgsGKttla~~La 23 (409)
T 3eph_A 7 IAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEECSSSSHHHHHHHHH
T ss_pred EECcchhhHHHHHHHHH
Confidence 57889999999998443
No 364
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=24.57 E-value=21 Score=27.87 Aligned_cols=18 Identities=11% Similarity=-0.147 Sum_probs=13.9
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
.-..|..|.|||+|....
T Consensus 13 i~v~G~~~~GKSsli~~l 30 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQF 30 (186)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 345677899999998744
No 365
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=24.51 E-value=1.2e+02 Score=25.16 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=34.4
Q ss_pred CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 251 QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 251 ~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
++...+..+.+.. ......+.+|.+.++|... .+.+.+.|.
T Consensus 218 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~-~~~i~I~d~ 259 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLEDQNLISAH-GKTIVVYGT 259 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-SSEEEEC--
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEc-CCEEEEEeC
Confidence 7789999999888 7888899999999999986 778888763
No 366
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=24.50 E-value=23 Score=30.11 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=30.6
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEEEEEeCcchhhc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRIIVTTRDRRVLD 138 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~~ 138 (349)
.+.+.|-.+.=+|+||..-. .. .+..++..+.. ..|..||++|.+...+.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~~~~~ 193 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ-SQNMTVVFTTHQPNQVV 193 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH-TSCCEEEEEESCHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHH
Confidence 67777778888999999853 22 22223222211 22667888888865543
No 367
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=24.48 E-value=23 Score=30.38 Aligned_cols=16 Identities=13% Similarity=-0.172 Sum_probs=0.0
Q ss_pred cccCCCCCchhhHHHH
Q 045618 14 LNRATSCGIVKIRRCL 29 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~ 29 (349)
....|+.|-|||||.+
T Consensus 49 ~~l~G~NGsGKSTLlk 64 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSA 64 (267)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
No 368
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=24.48 E-value=54 Score=28.66 Aligned_cols=12 Identities=17% Similarity=-0.083 Sum_probs=10.0
Q ss_pred CCchhhHHHHHH
Q 045618 20 CGIVKIRRCLMV 31 (349)
Q Consensus 20 gGiGKT~la~~~ 31 (349)
-|+|||+++...
T Consensus 77 pG~GKTtl~l~i 88 (315)
T 3bh0_A 77 PSMGKTAFALKQ 88 (315)
T ss_dssp TTSSHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 599999998843
No 369
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=24.43 E-value=23 Score=30.65 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=27.2
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEE--EEEeCcchhh
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRI--IVTTRDRRVL 137 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~I--lvTTR~~~~~ 137 (349)
.+.+.|-.+.-+|+||..-. .. .+..++..+.. .|..| |++|-+...+
T Consensus 171 ~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~--~g~tv~~iivtHd~~~~ 226 (279)
T 2ihy_A 171 MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSD--SYPTLAMIYVTHFIEEI 226 (279)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--HCTTCEEEEEESCGGGC
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHH--CCCEEEEEEEecCHHHH
Confidence 66777777888999998853 22 22222222221 14446 7777765543
No 370
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=24.40 E-value=25 Score=27.60 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=13.0
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+-|-||||+++..
T Consensus 10 l~G~~GsGKST~~~~L 25 (179)
T 2pez_A 10 LTGLSGAGKTTVSMAL 25 (179)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5677899999998844
No 371
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=24.30 E-value=26 Score=30.02 Aligned_cols=10 Identities=20% Similarity=-0.081 Sum_probs=9.3
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||.||||+|.
T Consensus 92 gG~GKTt~a~ 101 (271)
T 3bfv_A 92 PGAGKSTIAA 101 (271)
T ss_dssp TTSSHHHHHH
T ss_pred CCCcHHHHHH
Confidence 8999999987
No 372
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=24.30 E-value=1e+02 Score=24.45 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=37.1
Q ss_pred CCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 250 GQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 250 ~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
+++...+..+.+.. ......+.+|.+.++|... .+++.++|.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~i~d~ 211 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS-RGKITILDS 211 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEESCH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEEEeCH
Confidence 48899999999888 7888899999999999987 888999875
No 373
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=24.25 E-value=26 Score=27.94 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=13.2
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|-||||+++..-
T Consensus 9 l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 9 FEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHH
Confidence 55677999999998443
No 374
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=24.25 E-value=19 Score=28.89 Aligned_cols=16 Identities=13% Similarity=-0.172 Sum_probs=12.5
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|.|||||....
T Consensus 31 lvG~~g~GKSTLl~~l 46 (210)
T 1pui_A 31 FAGRSNAGKSSALNTL 46 (210)
T ss_dssp EEECTTSSHHHHHTTT
T ss_pred EECCCCCCHHHHHHHH
Confidence 5566899999998743
No 375
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=24.24 E-value=1.5e+02 Score=34.42 Aligned_cols=21 Identities=5% Similarity=-0.088 Sum_probs=15.9
Q ss_pred cEEEcCCCChHhHHHHHHHhh
Q 045618 144 NIYKVNGLKYREALELFCNCA 164 (349)
Q Consensus 144 ~~~~l~~L~~~ea~~L~~~~a 164 (349)
..+.++.++.++-..+|....
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHH
Confidence 468888888888777777654
No 376
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=24.09 E-value=33 Score=27.42 Aligned_cols=19 Identities=11% Similarity=-0.192 Sum_probs=14.4
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
...|+.|-||||+++....
T Consensus 6 ~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 6 TIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4567789999999985433
No 377
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=24.07 E-value=23 Score=30.31 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=31.6
Q ss_pred HHHHHhCCCceEEEEecCCC---ch---hHHHHHcccCCCCCCcEEEEEeCcchhhcc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VG---QLEYLIGGLERFGPGSRIIVTTRDRRVLDN 139 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~---~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~ 139 (349)
.+...|-.+.-+|+||..-. .. .+..++..+. ..|..||++|.+...+..
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tii~vtHd~~~~~~ 203 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK--TLGKTVILISHDIETVIN 203 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCCTTTGG
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHH
Confidence 77788888889999999863 22 2223332222 126678888888665443
No 378
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=24.02 E-value=23 Score=27.74 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=14.0
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
-..|..|.|||+|......
T Consensus 27 ~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 27 AFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp EEEEBTTSSHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 3556689999999875443
No 379
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=23.89 E-value=25 Score=27.14 Aligned_cols=19 Identities=11% Similarity=-0.050 Sum_probs=14.1
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
.-..|..|.|||+|.....
T Consensus 13 i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 3356778999999987443
No 380
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=23.88 E-value=23 Score=31.12 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=13.3
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
..+|+.|-|||||++..
T Consensus 84 aivG~sGsGKSTLl~ll 100 (306)
T 3nh6_A 84 ALVGPSGAGKSTILRLL 100 (306)
T ss_dssp EEESSSCHHHHHHHHHH
T ss_pred EEECCCCchHHHHHHHH
Confidence 35677899999998843
No 381
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=23.84 E-value=25 Score=27.69 Aligned_cols=19 Identities=16% Similarity=-0.073 Sum_probs=14.1
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
.-..|..|.|||+|.....
T Consensus 24 i~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 3356778999999987443
No 382
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=23.78 E-value=13 Score=30.06 Aligned_cols=19 Identities=11% Similarity=0.001 Sum_probs=14.3
Q ss_pred hcccCCCCCchhhHHHHHH
Q 045618 13 ELNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~~~ 31 (349)
+.-..|..|+|||+|+...
T Consensus 28 ki~lvG~~~vGKSsLi~~l 46 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRF 46 (201)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 3446677899999998743
No 383
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=23.74 E-value=25 Score=27.96 Aligned_cols=19 Identities=5% Similarity=-0.150 Sum_probs=14.3
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
+-..|..|.|||+|+....
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3456778999999987543
No 384
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=23.71 E-value=22 Score=27.35 Aligned_cols=16 Identities=6% Similarity=-0.232 Sum_probs=12.7
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|..|.|||+|....
T Consensus 19 v~G~~~~GKssli~~l 34 (179)
T 2y8e_A 19 FLGEQSVGKTSLITRF 34 (179)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5566899999998744
No 385
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=23.67 E-value=25 Score=27.41 Aligned_cols=17 Identities=6% Similarity=-0.408 Sum_probs=13.4
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 23 v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 23 MLGLDNAGKTTILKKFN 39 (186)
T ss_dssp EECSTTSSHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHh
Confidence 55668999999987544
No 386
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=23.46 E-value=26 Score=27.60 Aligned_cols=18 Identities=11% Similarity=-0.114 Sum_probs=13.5
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|.|||+|.....
T Consensus 29 ~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 29 VLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEESSTTSSHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHh
Confidence 355668999999987443
No 387
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=23.39 E-value=1.6e+02 Score=23.63 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 248 FNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 248 p~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
+-.++...+..+.+.. ......+..|.+.++|... .+.+.++|.
T Consensus 178 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~i~d~ 222 (232)
T 2gau_A 178 SIYLSREELATLSNMTVSNAIRTLSTFVSERMLALD-GKRIKIIDC 222 (232)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE-TTEEEESCH
T ss_pred EcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeC-CCEEEEeCH
Confidence 3448899999999988 7888899999999999987 678998874
No 388
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=23.38 E-value=22 Score=28.68 Aligned_cols=19 Identities=5% Similarity=-0.197 Sum_probs=14.2
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
.-..|..|+|||+|+....
T Consensus 31 i~vvG~~~vGKSsLi~~l~ 49 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFA 49 (205)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3456678999999987543
No 389
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=23.35 E-value=1.7e+02 Score=22.02 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=44.0
Q ss_pred hHHHHHHHhcccCCC--CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC--CCe---------EEecHHHHHH
Q 045618 236 EEKSLFLDIACFFNG--QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR--GNQ---------LQMHDLLQEM 296 (349)
Q Consensus 236 ~~~~~f~~la~fp~~--~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~--~~~---------~~mH~lv~~~ 296 (349)
..-+++.+++..+++ .+.+.+....... ......+..|.+.+||.... +|. +++-++++.+
T Consensus 12 yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~~Itl~dV~~av 86 (143)
T 3t8r_A 12 YGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEEISAGDIIRLL 86 (143)
T ss_dssp HHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGGGCBHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCcccCCHHHHHHHh
Confidence 345677888887543 7788888777766 67788899999999999654 233 5666666544
No 390
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=23.35 E-value=25 Score=30.66 Aligned_cols=16 Identities=19% Similarity=0.030 Sum_probs=12.8
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+.|.|||||....
T Consensus 170 l~G~sG~GKSTLln~l 185 (302)
T 2yv5_A 170 LAGPSGVGKSSILSRL 185 (302)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4567899999999754
No 391
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=23.26 E-value=31 Score=30.99 Aligned_cols=19 Identities=16% Similarity=0.025 Sum_probs=14.8
Q ss_pred ccCCCCCchhhHHHHHHhh
Q 045618 15 NRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~ 33 (349)
..+|..|.|||||+...|.
T Consensus 41 ~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 41 MVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp EECCCTTSCHHHHHHHHTT
T ss_pred EEEcCCCCCHHHHHHHHhC
Confidence 3667789999999886554
No 392
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=23.19 E-value=59 Score=25.57 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=36.5
Q ss_pred CCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 250 GQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 250 ~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
.++...+..+.+.. ......+.+|.+.++|... .+.+.++|.
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~i~d~ 181 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIATA-YRRVYLLDL 181 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEE-TTEEEECCH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec-CCEEEEeCH
Confidence 47889999998888 7888899999999999987 678999874
No 393
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=23.09 E-value=23 Score=28.13 Aligned_cols=16 Identities=6% Similarity=-0.261 Sum_probs=12.7
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|..|+|||+|+...
T Consensus 34 v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 34 MVGLDAAGKTTILYKL 49 (192)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4566899999999754
No 394
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=22.93 E-value=1.6e+02 Score=22.10 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=38.0
Q ss_pred CChhHHHHHHHhcccCCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC
Q 045618 233 IKAEEKSLFLDIACFFNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR 283 (349)
Q Consensus 233 L~~~~~~~f~~la~fp~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~ 283 (349)
|+...-.++.+++-.+++.....+...+... -.....++.|.+++||....
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 5555555666666566667777788777776 67788899999999999543
No 395
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=22.93 E-value=26 Score=29.85 Aligned_cols=50 Identities=14% Similarity=0.260 Sum_probs=32.1
Q ss_pred CHHHHHHHHhCCCceEEEEecCCCchhHHHHHcccCCCCCCcEEEEEeCcchh
Q 045618 84 NLPEYVRERLRRTKVLIVLDDVNKVGQLEYLIGGLERFGPGSRIIVTTRDRRV 136 (349)
Q Consensus 84 ~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IlvTTR~~~~ 136 (349)
.....+...|....=+|++|...+.+....+.... ..|..|++||-....
T Consensus 86 ~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 86 SFADALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp CHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 34446777777777789999998666554443332 235668888876543
No 396
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=22.90 E-value=20 Score=27.92 Aligned_cols=17 Identities=12% Similarity=-0.222 Sum_probs=12.8
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 23 v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 23 ILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEETTSSHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHh
Confidence 45668999999987443
No 397
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=22.86 E-value=27 Score=27.58 Aligned_cols=17 Identities=12% Similarity=-0.132 Sum_probs=13.0
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|+|||+|.....
T Consensus 28 ~vG~~~~GKSsl~~~l~ 44 (194)
T 3reg_A 28 VVGDGAVGKTCLLLAFS 44 (194)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHh
Confidence 45668999999987443
No 398
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=22.83 E-value=27 Score=27.63 Aligned_cols=17 Identities=18% Similarity=-0.111 Sum_probs=13.2
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
-..|..|.|||+|....
T Consensus 30 ~vvG~~~~GKSsLi~~l 46 (192)
T 2il1_A 30 IIIGSRGVGKTSLMERF 46 (192)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 35667899999998744
No 399
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=22.69 E-value=85 Score=25.20 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 249 NGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 249 ~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
-.++...+..+.+.. ......+..|.+.++|.......+.++|.
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~~i~d~ 206 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYTIPNL 206 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTTCEECSSH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCceEEEcCH
Confidence 347889999999988 78888999999999999974443777664
No 400
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=22.65 E-value=21 Score=27.85 Aligned_cols=18 Identities=11% Similarity=-0.311 Sum_probs=13.7
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
..+|..|.|||+|.....
T Consensus 8 ~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 8 VIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 356778999999987443
No 401
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=22.64 E-value=24 Score=28.58 Aligned_cols=16 Identities=13% Similarity=0.017 Sum_probs=12.7
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|..|+|||+|+...
T Consensus 39 vvG~~~vGKSsli~~l 54 (214)
T 2j1l_A 39 LVGDGGCGKTSLLMVF 54 (214)
T ss_dssp EEECTTSSHHHHHHHH
T ss_pred EECcCCCCHHHHHHHH
Confidence 5566899999998744
No 402
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=22.59 E-value=28 Score=27.35 Aligned_cols=19 Identities=11% Similarity=-0.116 Sum_probs=14.3
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
.-..|..|.|||+|+....
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLT 28 (208)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3456778999999987543
No 403
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=22.54 E-value=27 Score=28.59 Aligned_cols=20 Identities=15% Similarity=-0.032 Sum_probs=14.6
Q ss_pred cccCCCCCchhhHHHHHHhh
Q 045618 14 LNRATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f~ 33 (349)
+-..|..|+|||+|+.....
T Consensus 32 I~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 32 IILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 34566789999999875443
No 404
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=22.48 E-value=24 Score=27.36 Aligned_cols=17 Identities=6% Similarity=-0.156 Sum_probs=13.2
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 11 ~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 11 ILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHH
Confidence 56778999999987443
No 405
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=22.44 E-value=1.1e+02 Score=24.60 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=35.2
Q ss_pred CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 251 QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 251 ~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
++...+..+.+.. ......+.+|.+.++|... .+++.+.|.
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~i~d~ 229 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLHAR-GKTVVLYGT 229 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEEEC-
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEC-CCEEEEeeC
Confidence 7889999999988 7888899999999999987 688887663
No 406
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=22.42 E-value=28 Score=27.68 Aligned_cols=18 Identities=11% Similarity=-0.057 Sum_probs=13.6
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|.|||+|+....
T Consensus 32 ~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 32 VLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp EEESSTTSSHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHH
Confidence 355678999999987443
No 407
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=22.41 E-value=24 Score=29.72 Aligned_cols=17 Identities=12% Similarity=-0.101 Sum_probs=13.2
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+.|-||||+|+...
T Consensus 37 l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 37 LGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp EESCGGGTTHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45667999999998543
No 408
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=22.34 E-value=28 Score=27.42 Aligned_cols=16 Identities=13% Similarity=-0.288 Sum_probs=12.8
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|..|+|||+|....
T Consensus 22 v~G~~~~GKSsl~~~l 37 (199)
T 4bas_A 22 MCGLDNSGKTTIINQV 37 (199)
T ss_dssp EECCTTSCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5666899999998743
No 409
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=22.28 E-value=23 Score=28.22 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=14.3
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
....|+.|-||||+++..-
T Consensus 11 I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3456778999999998543
No 410
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=22.17 E-value=28 Score=27.34 Aligned_cols=17 Identities=6% Similarity=-0.353 Sum_probs=13.1
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|+|||+|.....
T Consensus 27 v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 27 LVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 55668999999987443
No 411
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=22.06 E-value=26 Score=28.14 Aligned_cols=16 Identities=6% Similarity=-0.213 Sum_probs=12.4
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+-|-||||+++..
T Consensus 15 l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 15 FEGLDRSGKSTQSKLL 30 (212)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 4556799999999843
No 412
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=22.00 E-value=30 Score=28.60 Aligned_cols=18 Identities=11% Similarity=-0.154 Sum_probs=13.3
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+++....
T Consensus 25 i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 25 IEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp EECSTTSCHHHHHHTTGG
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 445579999999985443
No 413
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=21.92 E-value=29 Score=27.24 Aligned_cols=20 Identities=10% Similarity=-0.099 Sum_probs=14.6
Q ss_pred hcccCCCCCchhhHHHHHHh
Q 045618 13 ELNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 13 ~~~~~~~gGiGKT~la~~~f 32 (349)
++-..|..|.|||+|.....
T Consensus 24 ki~vvG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 34456778999999987543
No 414
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=21.90 E-value=1.7e+02 Score=21.41 Aligned_cols=45 Identities=7% Similarity=-0.049 Sum_probs=34.6
Q ss_pred cccCCC--CC-HHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEe
Q 045618 245 ACFFNG--QD-KDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQM 289 (349)
Q Consensus 245 a~fp~~--~~-~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~m 289 (349)
+-|+.+ ++ ...+...+... ..+..++..|...++|....+..+.+
T Consensus 29 g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V 77 (125)
T 3neu_A 29 GEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFV 77 (125)
T ss_dssp TSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCEEEE
Confidence 345544 64 88899999888 88999999999999999875444333
No 415
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=21.81 E-value=38 Score=27.46 Aligned_cols=17 Identities=6% Similarity=-0.167 Sum_probs=13.1
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|-||||+++...
T Consensus 5 l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 5 LLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45677999999998543
No 416
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=21.75 E-value=27 Score=28.11 Aligned_cols=16 Identities=6% Similarity=-0.238 Sum_probs=12.5
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|+-|-||||+++..
T Consensus 14 l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 14 LEGVDRAGKSTQSRKL 29 (215)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4566799999999843
No 417
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=21.74 E-value=28 Score=29.80 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=29.1
Q ss_pred HHHHHhCCCceEEEEecCCC---chhHHHHHcccCCCCCCcEEEEEeCcchhhcc
Q 045618 88 YVRERLRRTKVLIVLDDVNK---VGQLEYLIGGLERFGPGSRIIVTTRDRRVLDN 139 (349)
Q Consensus 88 ~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~~~~IlvTTR~~~~~~~ 139 (349)
.+...|-.+.-+++||..-. ....+.+...+..... .||++|.+...+..
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~ 190 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNL 190 (263)
T ss_dssp HHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGG
T ss_pred HHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHH
Confidence 66777777888999999853 2222222222211122 68888887655433
No 418
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=21.65 E-value=46 Score=27.41 Aligned_cols=17 Identities=12% Similarity=-0.162 Sum_probs=12.7
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|+-|-||||+|+..-
T Consensus 21 l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 21 LLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 34556999999998543
No 419
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=21.54 E-value=30 Score=27.11 Aligned_cols=17 Identities=6% Similarity=-0.150 Sum_probs=13.1
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 25 v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 25 VIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 55668999999987543
No 420
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=21.52 E-value=26 Score=28.00 Aligned_cols=18 Identities=17% Similarity=-0.123 Sum_probs=13.7
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
+-..|..|+|||+|....
T Consensus 28 i~v~G~~~~GKSsLi~~l 45 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQF 45 (200)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHH
Confidence 335677899999998743
No 421
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=21.46 E-value=41 Score=27.38 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=13.4
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..|+-|-||||+++..-.
T Consensus 10 l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 10 LIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456679999999985433
No 422
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=21.42 E-value=26 Score=27.58 Aligned_cols=18 Identities=17% Similarity=-0.009 Sum_probs=13.6
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|.|||+|.....
T Consensus 12 ~vvG~~~~GKSsli~~l~ 29 (199)
T 2gf0_A 12 VVFGAGGVGKSSLVLRFV 29 (199)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 356778999999987443
No 423
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=21.40 E-value=28 Score=30.25 Aligned_cols=10 Identities=10% Similarity=-0.419 Sum_probs=9.3
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||.||||+|.
T Consensus 114 gG~GKTtva~ 123 (299)
T 3cio_A 114 PDSGKTFVSS 123 (299)
T ss_dssp SSSCHHHHHH
T ss_pred CCCChHHHHH
Confidence 8999999986
No 424
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=21.38 E-value=26 Score=27.60 Aligned_cols=19 Identities=11% Similarity=-0.129 Sum_probs=14.2
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
+-..|..|.|||+|.....
T Consensus 26 i~v~G~~~~GKSsli~~l~ 44 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYA 44 (191)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHh
Confidence 3456778999999987443
No 425
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=21.34 E-value=26 Score=27.91 Aligned_cols=17 Identities=6% Similarity=-0.252 Sum_probs=13.1
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|+....
T Consensus 29 vvG~~~~GKSsli~~l~ 45 (201)
T 3oes_A 29 ILGYRCVGKTSLAHQFV 45 (201)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHH
Confidence 45668999999987543
No 426
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=21.31 E-value=26 Score=27.97 Aligned_cols=18 Identities=22% Similarity=0.043 Sum_probs=13.8
Q ss_pred cccCCCCCchhhHHHHHH
Q 045618 14 LNRATSCGIVKIRRCLMV 31 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~ 31 (349)
.-..|..|.|||+|....
T Consensus 11 i~v~G~~~~GKSsli~~l 28 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRF 28 (206)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 345677899999998744
No 427
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=21.13 E-value=27 Score=27.43 Aligned_cols=17 Identities=6% Similarity=-0.418 Sum_probs=13.1
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 26 v~G~~~~GKSsli~~l~ 42 (190)
T 2h57_A 26 CLGLDNSGKTTIINKLK 42 (190)
T ss_dssp EEECTTSSHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHh
Confidence 55668999999987543
No 428
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=21.12 E-value=26 Score=28.08 Aligned_cols=17 Identities=6% Similarity=-0.126 Sum_probs=13.1
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
-..|..|+|||+|+...
T Consensus 13 ~i~G~~~~GKTsli~~l 29 (212)
T 2j0v_A 13 VTVGDGAVGKTCMLICY 29 (212)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 35667899999998743
No 429
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=21.05 E-value=31 Score=27.02 Aligned_cols=17 Identities=18% Similarity=0.004 Sum_probs=13.1
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 20 v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 20 IIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 55678999999987443
No 430
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=21.01 E-value=32 Score=27.11 Aligned_cols=17 Identities=12% Similarity=-0.042 Sum_probs=13.3
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 28 vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 28 LLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEECTTSSHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHh
Confidence 56678999999987543
No 431
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=21.00 E-value=29 Score=30.51 Aligned_cols=17 Identities=12% Similarity=-0.074 Sum_probs=13.4
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
.+|+.|-|||||++...
T Consensus 131 IvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 131 FIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp EECSSSSSHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHh
Confidence 56678999999988443
No 432
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=20.91 E-value=31 Score=27.07 Aligned_cols=19 Identities=21% Similarity=-0.006 Sum_probs=14.1
Q ss_pred cccCCCCCchhhHHHHHHh
Q 045618 14 LNRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~~f 32 (349)
.-..|..|.|||+|.....
T Consensus 19 i~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 3356778999999987443
No 433
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=20.90 E-value=1.2e+02 Score=24.79 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecHH
Q 045618 248 FNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHDL 292 (349)
Q Consensus 248 p~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~l 292 (349)
+-.++...+..+.+.. ......+..|.+.++|... .+++.+.|.
T Consensus 175 ~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~-~~~i~i~d~ 219 (250)
T 3e6c_C 175 TMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKK-KNKIIVYNL 219 (250)
T ss_dssp ECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-SSEEEESCH
T ss_pred cCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeC-CCEEEEecH
Confidence 3457899999999988 7888899999999999987 678888875
No 434
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=20.85 E-value=31 Score=27.96 Aligned_cols=16 Identities=6% Similarity=-0.153 Sum_probs=12.8
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|..|+|||+|....
T Consensus 32 vvG~~~vGKSsL~~~l 47 (214)
T 3q3j_B 32 LVGDVQCGKTAMLQVL 47 (214)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECcCCCCHHHHHHHH
Confidence 5666899999998744
No 435
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=20.85 E-value=1.2e+02 Score=22.48 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=38.2
Q ss_pred cCChhHHHHHHHhcccCCCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC
Q 045618 232 EIKAEEKSLFLDIACFFNGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR 283 (349)
Q Consensus 232 ~L~~~~~~~f~~la~fp~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~ 283 (349)
.|+...-.++.++.-.+++++...+.....-. -.....++.|.+++||....
T Consensus 36 glt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp TCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CCCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 35665566666666566667888888887776 67788899999999999653
No 436
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=20.76 E-value=98 Score=24.74 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCeEEecH
Q 045618 249 NGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQLQMHD 291 (349)
Q Consensus 249 ~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~~~mH~ 291 (349)
-+++...+..+.+.. ......+..|.+.++|... .+.+.+.|
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~i~d 219 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD-GREISILD 219 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES-SSCEEESC
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEec-CCEEEEeC
Confidence 347789999999888 7888899999999999986 67777765
No 437
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=20.73 E-value=30 Score=29.90 Aligned_cols=10 Identities=20% Similarity=0.039 Sum_probs=9.3
Q ss_pred CCchhhHHHH
Q 045618 20 CGIVKIRRCL 29 (349)
Q Consensus 20 gGiGKT~la~ 29 (349)
||.||||+|.
T Consensus 102 gG~GKTtva~ 111 (286)
T 3la6_A 102 PSIGMTFVCA 111 (286)
T ss_dssp SSSSHHHHHH
T ss_pred CCCcHHHHHH
Confidence 8999999977
No 438
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=20.72 E-value=1.4e+02 Score=21.70 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=40.6
Q ss_pred cCChhHHHHHHHhcccC-CCCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC
Q 045618 232 EIKAEEKSLFLDIACFF-NGQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR 283 (349)
Q Consensus 232 ~L~~~~~~~f~~la~fp-~~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~ 283 (349)
.|+...-.++..+.-.| ++.+...+....... ......++.|.+++||....
T Consensus 28 ~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 28 DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp TCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 46666677777777766 458888888888776 67788899999999999653
No 439
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=20.66 E-value=24 Score=27.38 Aligned_cols=17 Identities=18% Similarity=0.024 Sum_probs=6.6
Q ss_pred cccCCCCCchhhHHHHH
Q 045618 14 LNRATSCGIVKIRRCLM 30 (349)
Q Consensus 14 ~~~~~~gGiGKT~la~~ 30 (349)
.-..|..|.|||+|...
T Consensus 11 i~v~G~~~~GKssl~~~ 27 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFR 27 (183)
T ss_dssp EEEECCCCC--------
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44667789999999863
No 440
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=20.47 E-value=28 Score=27.37 Aligned_cols=18 Identities=6% Similarity=-0.213 Sum_probs=13.6
Q ss_pred ccCCCCCchhhHHHHHHh
Q 045618 15 NRATSCGIVKIRRCLMVF 32 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f 32 (349)
-..|..|+|||+|+....
T Consensus 22 ~v~G~~~~GKssli~~l~ 39 (194)
T 2atx_A 22 VVVGDGAVGKTCLLMSYA 39 (194)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 355668999999987544
No 441
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=20.41 E-value=29 Score=27.87 Aligned_cols=16 Identities=6% Similarity=-0.147 Sum_probs=12.7
Q ss_pred cCCCCCchhhHHHHHH
Q 045618 16 RATSCGIVKIRRCLMV 31 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~ 31 (349)
..|..|.|||+|+...
T Consensus 30 vvG~~~~GKSsli~~l 45 (207)
T 2fv8_A 30 VVGDGACGKTCLLIVF 45 (207)
T ss_dssp EEECTTSSHHHHHHHH
T ss_pred EECcCCCCHHHHHHHH
Confidence 5566899999998744
No 442
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=20.41 E-value=30 Score=27.88 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=13.2
Q ss_pred ccCCCCCchhhHHHHHH
Q 045618 15 NRATSCGIVKIRRCLMV 31 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~ 31 (349)
+..|+-|-||||+++..
T Consensus 16 gltG~~GSGKSTva~~L 32 (192)
T 2grj_A 16 GVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 45677799999999843
No 443
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=20.28 E-value=31 Score=31.93 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=15.3
Q ss_pred ccCCCCCchhhHHHHHHhhh
Q 045618 15 NRATSCGIVKIRRCLMVFRL 34 (349)
Q Consensus 15 ~~~~~gGiGKT~la~~~f~~ 34 (349)
..+|+.|.|||||....+..
T Consensus 46 aLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 46 LCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEECSTTSSSHHHHHHHHTS
T ss_pred EEECCCCCCHHHHHHHHhCc
Confidence 45677899999998865543
No 444
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=20.20 E-value=32 Score=31.94 Aligned_cols=18 Identities=22% Similarity=0.095 Sum_probs=13.3
Q ss_pred cCCCCCchhhHHHHHHhh
Q 045618 16 RATSCGIVKIRRCLMVFR 33 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f~ 33 (349)
..||-|.|||++|+....
T Consensus 68 l~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 68 LAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCcCCHHHHHHHHHH
Confidence 345679999999985443
No 445
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=20.19 E-value=1.8e+02 Score=21.01 Aligned_cols=52 Identities=12% Similarity=-0.037 Sum_probs=40.2
Q ss_pred cCChhHHHHHHHhcccCC-CCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcC
Q 045618 232 EIKAEEKSLFLDIACFFN-GQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSR 283 (349)
Q Consensus 232 ~L~~~~~~~f~~la~fp~-~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~ 283 (349)
.|+.....++..+.-.++ +.+...+...+... -.....++.|.+++||....
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 366666667777766665 58888888888777 67788899999999999653
No 446
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=20.15 E-value=1.9e+02 Score=19.67 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=35.7
Q ss_pred CCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCCCe---EEecHHHHHHHHHHH
Q 045618 251 QDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRGNQ---LQMHDLLQEMGREIV 301 (349)
Q Consensus 251 ~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~~~---~~mH~lv~~~a~~~~ 301 (349)
.+...+...+... ......++.|.+++||....+++ |.+=+-=+.++..+.
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~ 85 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIK 85 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHH
Confidence 6777888777766 67788899999999995443443 666665555554443
No 447
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=20.13 E-value=2.9e+02 Score=23.07 Aligned_cols=66 Identities=8% Similarity=0.058 Sum_probs=49.5
Q ss_pred HHHHHhcccCC---CCCHHHHHHHhccc-ccHHHhHHHHhhCcceEEcCC-CeEEecHHHHHHHHHHHhhh
Q 045618 239 SLFLDIACFFN---GQDKDSVLKMIGDS-SFAHYGLNVLVDKSLVTVSRG-NQLQMHDLLQEMGREIVRQE 304 (349)
Q Consensus 239 ~~f~~la~fp~---~~~~~~l~~~~~~~-~~~~~~l~~L~~~sLl~~~~~-~~~~mH~lv~~~a~~~~~~e 304 (349)
+.+..|-+|.. +.....+.....-. -.+...+..|.+.++|....+ ++|++-+-+..++.......
T Consensus 7 Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~~~~lg~~~~~~~ 77 (260)
T 3r4k_A 7 KALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYRLGPQVLRLAALREASV 77 (260)
T ss_dssp HHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEEECTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHHHHHHHHHHHhcC
Confidence 34444555543 37788888888777 778889999999999998765 88999888888877655443
No 448
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=20.09 E-value=29 Score=27.18 Aligned_cols=17 Identities=6% Similarity=-0.342 Sum_probs=13.2
Q ss_pred cCCCCCchhhHHHHHHh
Q 045618 16 RATSCGIVKIRRCLMVF 32 (349)
Q Consensus 16 ~~~~gGiGKT~la~~~f 32 (349)
..|..|.|||+|.....
T Consensus 21 v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 21 IVGLDNAGKTTILYQFS 37 (187)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHh
Confidence 55668999999987544
Done!