BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045619
(615 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 199/728 (27%), Positives = 300/728 (41%), Gaps = 131/728 (17%)
Query: 4 WAEGTDCCSWDGVTC--DNVT-------------------------------------GN 24
W+ + C++DGVTC D VT G+
Sbjct: 30 WSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS 89
Query: 25 VIGLDLHCSMLEGTIDDNS------TLFHLLRLQSLAFNNFNGSQIS-----PEFLRLKE 73
V G S+ + NS TL L L F N + + + L+L
Sbjct: 90 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 149
Query: 74 LTYLNLSYTRFSG--LLPQEISH-MSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNL 130
L L+LS SG ++ +S +L HL + + + S D+ S L L++
Sbjct: 150 LEVLDLSANSISGANVVGWVLSDGCGELKHLAI-----SGNKISGDVDVSRCVNLEFLDV 204
Query: 131 GWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLP 190
+ S PF L S + LD+SG + G+F R I L+ L++SSN+++ G +P
Sbjct: 205 SSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV-GPIP 261
Query: 191 ESNWSTSLRELDLSFSNFTG----FLRNS-EELEFLDLSNNRIHGRI------------- 232
SL+ L L+ + FTG FL + + L LDLS N +G +
Sbjct: 262 PLPLK-SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 320
Query: 233 --SKSDSQG---------WKSLTYLDISNNFLTQIEQHPWKNITV----LNLRNNTIQGT 277
S ++ G + L LD+S N + N++ L+L +N G
Sbjct: 321 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 380
Query: 278 ILV-----PPPSTRAFLFSNNKLFGQIPPSICXXXXXXXXXXXXXXXXGTIPPCLGNFST 332
IL P + + NN G+IPP++ GTIP LG+ S
Sbjct: 381 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS- 439
Query: 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNM 392
+L L L N L+G IP +L +L L+ N L G P L++C L +++ NN
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 393 IGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLP---- 448
+ P W+G L L IL L +N F G + + ++L +DL+ N F G +P
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLFNGTIPAAMF 556
Query: 449 --------------RWIFVSLEAMKNVDEKGSDGLYMQ--REEDYYQDS------VTVTV 486
R++++ + MK + L Q R E + S +T V
Sbjct: 557 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 616
Query: 487 KGRDVVLK-RXXXXXXXXDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANM 545
G D+S N IP+ +G L +LNL HN ++GSIP ++
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 546 TALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFENDSYIGNIH 605
L LDLSSNKL GRI + + ++T L ++LS N L G IP QF TF ++ N
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPG 736
Query: 606 LCGEPLTK 613
LCG PL +
Sbjct: 737 LCGYPLPR 744
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 199/728 (27%), Positives = 300/728 (41%), Gaps = 131/728 (17%)
Query: 4 WAEGTDCCSWDGVTC--DNVT-------------------------------------GN 24
W+ + C++DGVTC D VT G+
Sbjct: 33 WSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS 92
Query: 25 VIGLDLHCSMLEGTIDDNS------TLFHLLRLQSLAFNNFNGSQIS-----PEFLRLKE 73
V G S+ + NS TL L L F N + + + L+L
Sbjct: 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152
Query: 74 LTYLNLSYTRFSG--LLPQEISH-MSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNL 130
L L+LS SG ++ +S +L HL + + + S D+ S L L++
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAI-----SGNKISGDVDVSRCVNLEFLDV 207
Query: 131 GWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLP 190
+ S PF L S + LD+SG + G+F R I L+ L++SSN+++ G +P
Sbjct: 208 SSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV-GPIP 264
Query: 191 ESNWSTSLRELDLSFSNFTG----FLRNS-EELEFLDLSNNRIHGRI------------- 232
SL+ L L+ + FTG FL + + L LDLS N +G +
Sbjct: 265 PLPLK-SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Query: 233 --SKSDSQG---------WKSLTYLDISNNFLTQIEQHPWKNITV----LNLRNNTIQGT 277
S ++ G + L LD+S N + N++ L+L +N G
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383
Query: 278 ILV-----PPPSTRAFLFSNNKLFGQIPPSICXXXXXXXXXXXXXXXXGTIPPCLGNFST 332
IL P + + NN G+IPP++ GTIP LG+ S
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS- 442
Query: 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNM 392
+L L L N L+G IP +L +L L+ N L G P L++C L +++ NN
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 393 IGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLP---- 448
+ P W+G L L IL L +N F G + + ++L +DL+ N F G +P
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLFNGTIPAAMF 559
Query: 449 --------------RWIFVSLEAMKNVDEKGSDGLYMQ--REEDYYQDS------VTVTV 486
R++++ + MK + L Q R E + S +T V
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619
Query: 487 KGRDVVLK-RXXXXXXXXDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANM 545
G D+S N IP+ +G L +LNL HN ++GSIP ++
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 546 TALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFENDSYIGNIH 605
L LDLSSNKL GRI + + ++T L ++LS N L G IP QF TF ++ N
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPG 739
Query: 606 LCGEPLTK 613
LCG PL +
Sbjct: 740 LCGYPLPR 747
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 114/293 (38%), Gaps = 55/293 (18%)
Query: 323 IPPCLGNFSTQLTILHLNN-NKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCD 381
IP L N L L++ N L G IP A A + L L + + G P +L+
Sbjct: 68 IPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIK 125
Query: 382 ELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHN 441
L ++ N + T P + LP L + NR G + +S F + + +S N
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-KLFTSMTISRN 184
Query: 442 EFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRXXXXXX 501
TG +P F +L
Sbjct: 185 RLTGKIPP-TFANLN-------------------------------------------LA 200
Query: 502 XXDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLT---GSIPVSFANMTALESLDLSSNKL 558
DLS N + + + G K+ ++L+ N L G + +S L LDL +N++
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRI 256
Query: 559 HGRILEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 611
+G + + L + L SLN+S+N L G IP+G F+ +Y N LCG PL
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 290 FSNNKLFGQIPPSICXXXXXXXXXXXXXXXXGTIPPCLGNFSTQLTILHLNNNKLQGRIP 349
FS N L G +PPSI G IP G+FS T + ++ N+L G+IP
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Query: 350 DAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNI 409
FAN +L +DL+ N LEG + +++ N + +G LN
Sbjct: 192 PTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNG 248
Query: 410 LVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPR 449
L LR+NR YG L + F L +++S N G +P+
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIPQ 286
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 122/325 (37%), Gaps = 90/325 (27%)
Query: 2 TSWAEGTDCC--SWDGVTCDNVTGN--VIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFN 57
+SW TDCC +W GV CD T V LDL L S+L +L L L
Sbjct: 25 SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84
Query: 58 NFNG--SQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSF 115
N I P +L +L YL +++T SG +P +S +
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK------------------- 125
Query: 116 DLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQ 175
T+ LD S + G P I LP+L
Sbjct: 126 ---------------------------------TLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 176 ELHLSSNKYLTGYLPES--NWSTSLRELDLSFSNFTGFLRNS---EELEFLDLSNNRIHG 230
+ N+ ++G +P+S ++S + +S + TG + + L F+DLS N + G
Sbjct: 153 GITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211
Query: 231 RIS---KSDSQGWK------SLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVP 281
S SD K SL + D+ L+ KN+ L+LRNN I GT+
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAF-DLGKVGLS-------KNLNGLDLRNNRIYGTL--- 260
Query: 282 PPSTRAFLF------SNNKLFGQIP 300
P F S N L G+IP
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 114/269 (42%), Gaps = 49/269 (18%)
Query: 35 LEGTIDDNSTLFHLLRLQSLAFNNFNGSQISPE--FLRLKELTYLNLSYTRFSGLLPQEI 92
L+G + + L L+ L + N +I P FL ++ L+L++ + + +++
Sbjct: 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174
Query: 93 SHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLN---LGWADRSLIEPFSVLNLSST 149
+ + K F LL + L +N LGW PF +++
Sbjct: 175 ---------------LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG--NPFK----NTS 213
Query: 150 ITVLDLSGTGMRGNFPREIFQL---PHLQELHLSSNKYLTGYLPESNW------------ 194
IT LDLSG G + + + F +Q L LS++ + +N+
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 195 STSLRELDLSFSNFTGFLRNS----EELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISN 250
++ ++ DLS S L++ +LE L L+ N I+ +I + G L L++S
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQ 332
Query: 251 NFLTQIEQHPWKN---ITVLNLRNNTIQG 276
NFL I+ ++N + VL+L N I+
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 524 LIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLW 583
L+ LNLS N L F N+ LE LDLS N + + L + L L L N+L
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL- 383
Query: 584 GRIPRG 589
+P G
Sbjct: 384 KSVPDG 389
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 78 NLSYTRFSGLLPQEISHMSKLTHLDLFDCDM-TIEQKSFDLLASNLTKLSVLNLGWADRS 136
+LS ++ LL SH + L L L ++ I+ +F LT L LNL
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF----WGLTHLLKLNLSQNFLG 336
Query: 137 LIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNK 183
I+ NL + VLDLS +R + LP+L+EL L +N+
Sbjct: 337 SIDSRMFENLDK-LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 121/294 (41%), Gaps = 51/294 (17%)
Query: 101 LDLFDCDMTIEQKSFDLLASNLTKLS--VLNLGWADRSLIE----PFSVLNLSSTITVLD 154
+DLF+C + SF L++ + ++ N GW L+ F L L S +
Sbjct: 275 IDLFNCLTNV--SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332
Query: 155 LSGTGMRGNFPREIFQLPHLQELHLSSNKY-LTGYLPESNW-STSLRELDLSF------- 205
S G GN E+ LP L+ L LS N G +S++ +TSL+ LDLSF
Sbjct: 333 TSNKG--GNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389
Query: 206 SNFTGFLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKN-- 263
SNF G E+LE LD ++ + S ++L YLDIS+ T++ + N
Sbjct: 390 SNFLGL----EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGL 444
Query: 264 --ITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSICXXXXXXXXXXXXXXXXG 321
+ VL + N+ Q L P I
Sbjct: 445 SSLEVLKMAGNSFQENFL---------------------PDIFTELRNLTFLDLSQCQLE 483
Query: 322 TIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPR 375
+ P N + L +L++ +N+L+ +PD + SL+ + L++N + PR
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 518 LGDFKSLIVLNLSHNGLTG-SIPVSFANMTALESLDLSSNKLHG------RILEQL 566
+G K+L LN++HN + +P F+N+T LE LDLSSNK+ R+L Q+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 21/187 (11%)
Query: 404 LPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDE 463
LP L L L N C S F +L+ +DLS N F+ LE ++++D
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDF 403
Query: 464 KGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRXXXXXXXXDLSSNQFQAEIPRVLGDFKS 523
+ S+ M +V + R+++ D+S + + S
Sbjct: 404 QHSNLKQMSE--------FSVFLSLRNLI---------YLDISHTHTRVAFNGIFNGLSS 446
Query: 524 LIVLNLSHNGLTGS-IPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRL 582
L VL ++ N + +P F + L LDLS +L S+++L LN++ N+L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 583 WGRIPRG 589
+P G
Sbjct: 507 -KSVPDG 512
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 30/227 (13%)
Query: 46 FHLLRLQSLAFNNFNGSQISPEF--LRLKELTYLNLSYT--RFSGLLPQEISHMSKLTHL 101
F L+L+SL F ++ F + L L +L+LS F G Q + L +L
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 102 DL-FDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGM 160
DL F+ +T+ L +L L+ ++ + FSV + LD+S T
Sbjct: 379 DLSFNGVITMSSNFL-----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 161 RGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGFLRNSEELEF 220
R F L L+ L ++ N + +LP+ FT LRN L F
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---------------FTE-LRN---LTF 474
Query: 221 LDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVL 267
LDLS ++ ++S + SL L++++N L + + +T L
Sbjct: 475 LDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 24/165 (14%)
Query: 101 LDLFDCDMTIEQKSFDLLASNLTKLS--VLNLGWADRSLIE----PFSVLNLSSTITVLD 154
+DLF+C + SF L++ + ++ N GW L+ F L L S +
Sbjct: 275 IDLFNCLTNV--SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332
Query: 155 LSGTGMRGNFPREIFQLPHLQELHLSSNKY-LTGYLPESNW-STSLRELDLSF------- 205
S G GN E+ LP L+ L LS N G +S++ +TSL+ LDLSF
Sbjct: 333 TSNKG--GNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389
Query: 206 SNFTGFLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISN 250
SNF G E+LE LD ++ + S ++L YLDIS+
Sbjct: 390 SNFLGL----EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 518 LGDFKSLIVLNLSHNGLTG-SIPVSFANMTALESLDLSSNKLHG------RILEQL 566
+G K+L LN++HN + +P F+N+T LE LDLSSNK+ R+L Q+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 108/255 (42%), Gaps = 36/255 (14%)
Query: 46 FHLLRLQSLAFNNFNGSQISPEF--LRLKELTYLNLSYT--RFSGLLPQEISHMSKLTHL 101
F L+L+SL F ++ F + L L +L+LS F G Q + L +L
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 102 DL-FDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGM 160
DL F+ +T+ L +L L+ ++ + FSV + LD+S T
Sbjct: 379 DLSFNGVITMSSNFL-----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 161 RGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGFLRNSEELEF 220
R F L L+ L ++ N + +LP+ FT LRN L F
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---------------FTE-LRN---LTF 474
Query: 221 LDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTI-- 278
LDLS ++ ++S + SL L++S+N ++ P+K + L + + ++ +
Sbjct: 475 LDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533
Query: 279 ----LVPPPSTRAFL 289
L PS+ AFL
Sbjct: 534 KKQELQHFPSSLAFL 548
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 504 DLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRIL 563
DLS Q + P SL VLN+SHN + + +L+ LD S N +
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535
Query: 564 EQLLSV-TALASLNLSYN 580
++L ++LA LNL+ N
Sbjct: 536 QELQHFPSSLAFLNLTQN 553
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 20/182 (10%)
Query: 404 LPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDE 463
LP L L L N C S F +L+ +DLS N F+ LE ++++D
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDF 403
Query: 464 KGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRXXXXXXXXDLSSNQFQAEIPRVLGDFKS 523
+ S+ M +V + R+++ D+S + + S
Sbjct: 404 QHSNLKQMSE--------FSVFLSLRNLI---------YLDISHTHTRVAFNGIFNGLSS 446
Query: 524 LIVLNLSHNGLTGS-IPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRL 582
L VL ++ N + +P F + L LDLS +L S+++L LN+S+N
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 583 WG 584
+
Sbjct: 507 FS 508
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 24/165 (14%)
Query: 101 LDLFDCDMTIEQKSFDLLASNLTKLS--VLNLGWADRSLIE----PFSVLNLSSTITVLD 154
+DLF+C + SF L++ + ++ N GW L+ F L L S +
Sbjct: 299 IDLFNCLTNV--SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 356
Query: 155 LSGTGMRGNFPREIFQLPHLQELHLSSNKY-LTGYLPESNWST-SLRELDLSF------- 205
S G GN E+ LP L+ L LS N G +S++ T SL+ LDLSF
Sbjct: 357 TSNKG--GNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS 413
Query: 206 SNFTGFLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISN 250
SNF G E+LE LD ++ + S ++L YLDIS+
Sbjct: 414 SNFLGL----EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 518 LGDFKSLIVLNLSHNGLTG-SIPVSFANMTALESLDLSSNKLHG------RILEQL 566
+G K+L LN++HN + +P F+N+T LE LDLSSNK+ R+L Q+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 504 DLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRIL 563
DLS Q + P SL VLN+SHN + + +L+ LD S N +
Sbjct: 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559
Query: 564 EQLLSV-TALASLNLSYN 580
++L ++LA LNL+ N
Sbjct: 560 QELQHFPSSLAFLNLTQN 577
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 107/255 (41%), Gaps = 36/255 (14%)
Query: 46 FHLLRLQSLAFNNFNGSQISPEF--LRLKELTYLNLSYT--RFSGLLPQEISHMSKLTHL 101
F L+L+SL F ++ F + L L +L+LS F G Q L +L
Sbjct: 343 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYL 402
Query: 102 DL-FDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGM 160
DL F+ +T+ L +L L+ ++ + FSV + LD+S T
Sbjct: 403 DLSFNGVITMSSNFL-----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457
Query: 161 RGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGFLRNSEELEF 220
R F L L+ L ++ N + +LP+ FT LRN L F
Sbjct: 458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---------------FTE-LRN---LTF 498
Query: 221 LDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTI-- 278
LDLS ++ ++S + SL L++S+N ++ P+K + L + + ++ +
Sbjct: 499 LDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557
Query: 279 ----LVPPPSTRAFL 289
L PS+ AFL
Sbjct: 558 KKQELQHFPSSLAFL 572
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 20/182 (10%)
Query: 404 LPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDE 463
LP L L L N C S F +L+ +DLS N F+ LE ++++D
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN--FLGLEQLEHLDF 427
Query: 464 KGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRXXXXXXXXDLSSNQFQAEIPRVLGDFKS 523
+ S+ M +V + R+++ D+S + + S
Sbjct: 428 QHSNLKQMSE--------FSVFLSLRNLI---------YLDISHTHTRVAFNGIFNGLSS 470
Query: 524 LIVLNLSHNGLTGS-IPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRL 582
L VL ++ N + +P F + L LDLS +L S+++L LN+S+N
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Query: 583 WG 584
+
Sbjct: 531 FS 532
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 518 LGDFKSLIVLNLSHNGLTG-SIPVSFANMTALESLDLSSNKLHG------RILEQL 566
+G K+L LN++HN + +P F+N+T LE LDLSSNK+ R+L Q+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 518 LGDFKSLIVLNLSHNGLTG-SIPVSFANMTALESLDLSSNKLHG------RILEQL 566
+G K+L LN++HN + +P F+N+T LE LDLSSNK+ R+L Q+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 518 LGDFKSLIVLNLSHNGLTG-SIPVSFANMTALESLDLSSNKLHG------RILEQL 566
+G K+L LN++HN + +P F+N+T LE LDLSSNK+ R+L Q+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 518 LGDFKSLIVLNLSHNGLTG-SIPVSFANMTALESLDLSSNKLHG------RILEQL 566
+G K+L LN++HN + +P F+N+T LE LDLSSNK+ R+L Q+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 518 LGDFKSLIVLNLSHNGLTG-SIPVSFANMTALESLDLSSNKLHG------RILEQL 566
+G K+L LN++HN + +P F+N+T LE LDLSSNK+ R+L Q+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 109/478 (22%), Positives = 180/478 (37%), Gaps = 93/478 (19%)
Query: 45 LFHLLRLQSLAFNNFNGSQISPEFLR-LKELTYLNLSYTRFSGL-LPQEISHMSKLTHLD 102
LFHL L+ L F + + + + R LK LT L+LS + L L ++ L +D
Sbjct: 96 LFHLFELR-LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154
Query: 103 L------FDCDMTIE-----QKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTIT 151
C+ +E SF LA+N + S +++ W + PF + +
Sbjct: 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAAN-SLYSRVSVDWG--KCMNPFR----NMVLE 207
Query: 152 VLDLSGTG----MRGNFPREI-----FQLPHLQELHLSSNKYLTGYLPESN-----WSTS 197
+LD+SG G + GNF I F L + + + P+ N +S
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267
Query: 198 LRELDLS----FSNFTGFLRNSEELEFLDLSNNRIH-----------------------G 230
+R LDLS FS + ++L+ L+L+ N+I+ G
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 231 RISKSDSQGWKSLTYLDISNNFLTQIEQHPWK---NITVLNLRNNTIQGTILVPPPSTRA 287
+ S+ G + Y+D+ N + I+ +K + L+LR+N + +P S
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP--SIPD 385
Query: 288 FLFSNNKLFGQIPPSICXXXXXXXXXXXXXXXXGTIPPCLGNFSTQLTILHLNNNKLQGR 347
S NKL P I + L L IL LN N+
Sbjct: 386 IFLSGNKLVTL--PKINLTANLIHLSENRLENLDILYFLLR--VPHLQILILNQNRFSSC 441
Query: 348 IPDAFANGSCSLRSLDLNSNKLEGPFPRYLA-----DCDELEVVNVGNNMIGDTFPSWLG 402
D + + SL L L N L+ + L L+V+ + +N + P
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501
Query: 403 CLPGLNILVLRSNRFYG-------------PLCESNIMFP----FQALRIIDLSHNEF 443
L L L L SNR + + ++ P F +L ++D++HN+F
Sbjct: 502 HLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKF 559
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 359 LRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFY 418
L+ L+L NK+ D L+V+N+ N++G+ + S LP + + L+ N
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI- 350
Query: 419 GPLCESNIMFPFQALRIIDLSHNEFTG--FLP 448
+ + + L+ +DL N T F+P
Sbjct: 351 -AIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 517 VLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKL 558
V L VL L+HN L P F+++TAL L L+SN+L
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 12/127 (9%)
Query: 166 REIFQ-LPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFT------GFLRNSEEL 218
+E F+ LP+L+ L L S+K + L EL L F + G+ RN + L
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125
Query: 219 EFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPW-----KNITVLNLRNNT 273
LDLS N+I SL +D S+N + + +H K ++ +L N+
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185
Query: 274 IQGTILV 280
+ + V
Sbjct: 186 LYSRVSV 192
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 505 LSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILE 564
L NQ ++ PRV L L+L +N L F +T+L+ L L +N+L R+ E
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPE 174
Query: 565 QLL-SVTALASLNLSYNRLWGRIPRGNQFNTFE 596
+T L +L L N+L R+P G F++ E
Sbjct: 175 GAFDKLTELKTLKLDNNQL-KRVPEG-AFDSLE 205
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 34/171 (19%)
Query: 322 TIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKL----EGPFPRYL 377
++PP + + T+LT L L N+LQ +P + SL+ L L +N+L EG F +
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181
Query: 378 ADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIID 437
EL+ + + NN + L L +L L+ N + C N +
Sbjct: 182 ----ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD---CTCNGII--------- 225
Query: 438 LSHNEFTGFLPRWIFVSL-EAMKNVD----EKGSDGLYMQREEDYYQDSVT 483
++ +W+ E + VD EKG + E+D D V+
Sbjct: 226 --------YMAKWLKKKADEGLGGVDTAGCEKGGKAVLEITEKDAASDCVS 268
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 505 LSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILE 564
++ N+ QA V +L L L N L P F ++T L L L N+L
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151
Query: 565 QLLSVTALASLNLSYNRLWGRIPRG 589
+T+L L L YN R+P G
Sbjct: 152 VFDKLTSLKELRL-YNNQLKRVPEG 175
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 482 VTVTVKGRDVVLKRXXXXXXXXDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVS 541
V + KG V+ K L NQF +P+ L ++K L +++LS+N ++ S
Sbjct: 15 VRCSNKGLKVLPKGIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQS 73
Query: 542 FANMTALESLDLSSNKLH 559
F+NMT L +L LS N+L
Sbjct: 74 FSNMTQLLTLILSYNRLR 91
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 505 LSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILE 564
LS N+ + PR KSL +L+L N ++ +F +++AL L + +N L+
Sbjct: 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144
Query: 565 QLLS 568
Q LS
Sbjct: 145 QWLS 148
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 34/231 (14%)
Query: 68 FLRLKELTYLNLSYT--RFSGLLPQEISHMSKLTHLDL-FDCDMTIEQKSFDLLASNLTK 124
F +L +LT L+LS F G Q + L +LDL F+ +T+ S + L L +
Sbjct: 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM---SSNFLG--LEQ 102
Query: 125 LSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKY 184
L L+ ++ + FSV + LD+S T R F L L+ L ++ N +
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 185 LTGYLPESNWSTSLRELDLSFSNFTGFLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLT 244
+LP+ FT LRN L FLDLS ++ ++S + SL
Sbjct: 163 QENFLPDI---------------FTE-LRN---LTFLDLSQCQLE-QLSPTAFNSLSSLQ 202
Query: 245 YLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTI------LVPPPSTRAFL 289
L++S+N ++ P+K + L + + ++ + L PS+ AFL
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 504 DLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRIL 563
DLS Q + P SL VLN+SHN + + +L+ LD S N +
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240
Query: 564 EQLLSV-TALASLNLSYN 580
++L ++LA LNL+ N
Sbjct: 241 QELQHFPSSLAFLNLTQN 258
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 325 PCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384
P LG LT+L ++ N+L +P G L+ L L N+L+ P L +LE
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 385 VVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFY 418
+++ NN + + L L L+ L+L+ N Y
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 504 DLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPV-SFANMTALESLDLSSNKLHGRI 562
DLS NQ Q+ +P + +L VL++S N LT S+P+ + + L+ L L N+L
Sbjct: 83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLP 140
Query: 563 LEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFEN 597
L L L+L+ N+L +P G N EN
Sbjct: 141 PGLLTPTPKLEKLSLANNQL-TELPAG-LLNGLEN 173
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 516 RVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575
+V G L L+LSHN L S+P+ + AL LD+S N+L L L + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 576 NLSYNRL 582
L N L
Sbjct: 130 YLKGNEL 136
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 100/433 (23%), Positives = 175/433 (40%), Gaps = 73/433 (16%)
Query: 49 LRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDM 108
LR L+FN+F+ + EF L +LT+L LS +F L ++H+ HL D+
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL----HLSCILLDL 178
Query: 109 -TIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSV-LNLS-STITVLDLSGTGMRG--- 162
+ K + + + +VL+L + SL FSV +N+S + + L LS +
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSL---FSVQVNMSVNALGHLQLSNIKLNDENC 235
Query: 163 ----NFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGFLRNSEEL 218
F E+ + P L + L E+ W S++ + +
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQH--------IETTWKCSVKLFQFFW---------PRPV 278
Query: 219 EFLDLSNNRIHGRISKSD----SQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTI 274
E+L++ N I RI + + KSL + N ++ + +N++ +I
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338
Query: 275 QGTI---LVPPPSTRAFLFSNNKLFGQIPPSICXXXXXXXXXXXXXXXXGTIPPCLGNFS 331
T +V PPS +F F N F Q C
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLN---FTQ-----------------NVFTDSVFQGCSTLKR 378
Query: 332 TQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEG-PFPRYLADCDELEVVNVGN 390
Q IL N K ++ N S SL +LD++ N L + R A + + V+N+ +
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437
Query: 391 NMI-GDTFPSWLGCL-PGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLP 448
NM+ G F CL P + +L L +NR + + QAL+ ++++ N+ +P
Sbjct: 438 NMLTGSVF----RCLPPKVKVLDLHNNRI---MSIPKDVTHLQALQELNVASNQLKS-VP 489
Query: 449 RWIFVSLEAMKNV 461
+F L +++ +
Sbjct: 490 DGVFDRLTSLQYI 502
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 504 DLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSF--ANMTALESLDLSSNKLHGR 561
+ + N F + + K L L L NGL V+ NM++LE+LD+S N L+
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418
Query: 562 ILEQLLS-VTALASLNLSYNRLWGRIPR 588
++ + ++ LNLS N L G + R
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSVFR 446
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 172 PHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFS-----NFTGFLRNSEELEFLDLSNN 226
P + L LS N +P+ ++ + LR L LS + +F FL N ++LE+LD+S
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN-QDLEYLDVS-- 108
Query: 227 RIHGRISKSDSQGWKSLTYLDISNN 251
H R+ SL +LD+S N
Sbjct: 109 --HNRLQNISCCPMASLRHLDLSFN 131
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 522 KSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNR 581
+S++VLNLS N LTGS+ ++ LDL +N++ I + + + AL LN++ N+
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQ 484
Query: 582 LWGRIPRG 589
L +P G
Sbjct: 485 L-KSVPDG 491
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 325 PCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384
P LG LT+L ++ N+L +P G L+ L L N+L+ P L +LE
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 385 VVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFY 418
+++ NN + + L L L+ L+L+ N Y
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 504 DLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPV-SFANMTALESLDLSSNKLHGRI 562
DLS NQ Q+ +P + +L VL++S N LT S+P+ + + L+ L L N+L
Sbjct: 83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLP 140
Query: 563 LEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFEN 597
L L L+L+ N+L +P G N EN
Sbjct: 141 PGLLTPTPKLEKLSLANNQL-TELPAG-LLNGLEN 173
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 516 RVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575
+V G L L+LSHN L S+P+ + AL LD+S N+L L L + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 576 NLSYNRL 582
L N L
Sbjct: 130 YLKGNEL 136
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 325 PCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384
P LG LT+L ++ N+L +P G L+ L L N+L+ P L +LE
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 385 VVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFY 418
+++ NN + + L L L+ L+L+ N Y
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 504 DLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPV-SFANMTALESLDLSSNKLHGRI 562
DLS NQ Q+ +P + +L VL++S N LT S+P+ + + L+ L L N+L
Sbjct: 83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLP 140
Query: 563 LEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFEN 597
L L L+L+ N+L +P G N EN
Sbjct: 141 PGLLTPTPKLEKLSLANNQL-TELPAG-LLNGLEN 173
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 516 RVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575
+V G L L+LSHN L S+P+ + AL LD+S N+L L L + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 576 NLSYNRL 582
L N L
Sbjct: 130 YLKGNEL 136
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 325 PCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384
P LG LT+L ++ N+L +P G L+ L L N+L+ P L +LE
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 385 VVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFY 418
+++ NN + + L L L+ L+L+ N Y
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 504 DLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPV-SFANMTALESLDLSSNKLHGRI 562
DLS NQ Q+ +P + +L VL++S N LT S+P+ + + L+ L L N+L
Sbjct: 83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLP 140
Query: 563 LEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFEN 597
L L L+L+ N+L +P G N EN
Sbjct: 141 PGLLTPTPKLEKLSLANNQL-TELPAG-LLNGLEN 173
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 516 RVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575
+V G L L+LSHN L S+P+ + AL LD+S N+L L L + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 576 NLSYNRL 582
L N L
Sbjct: 130 YLKGNEL 136
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 49/236 (20%)
Query: 35 LEGTIDDNSTLFHLLRLQSLAFNNFNGSQISPE--FLRLKELTYLNLSYTRFSGLLPQEI 92
L+G + + L L+ L + N +I P FL ++ L+L++ + + +++
Sbjct: 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174
Query: 93 SHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLN---LGWADRSLIEPFSVLNLSST 149
+ + K F LL + L +N LGW PF +++
Sbjct: 175 ---------------LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG--NPFK----NTS 213
Query: 150 ITVLDLSGTGMRGNFPREIFQL---PHLQELHLSSNKYLTGYLPESNW------------ 194
IT LDLSG G + + + F +Q L LS++ + +N+
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 195 STSLRELDLSFSNFTGFLRNS----EELEFLDLSNNRIHGRISKSDSQGWKSLTYL 246
++ ++ DLS S L++ +LE L L+ N I+ K D + LT+L
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN----KIDDNAFWGLTHL 325
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 504 DLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRIL 563
+LSSN ++I + G SL LN S N +T P AN+T LE LD+SSNK+ +
Sbjct: 135 ELSSNTI-SDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--I 188
Query: 564 EQLLSVTALASLNLSYNRLWGRIPRG 589
L +T L SL + N++ P G
Sbjct: 189 SVLAKLTNLESLIATNNQISDITPLG 214
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 112/257 (43%), Gaps = 18/257 (7%)
Query: 334 LTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMI 393
LT ++ +NN+L P L + +N+N++ P LA+ L + + NN I
Sbjct: 65 LTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 394 GDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFV 453
D P L L LN L L SN + + + + +L+ ++ S N+ T P
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNT----ISDISALSGLTSLQQLNFSSNQVTDLKPLANLT 173
Query: 454 SLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRXXXXXXXXDLSSNQFQAE 513
+LE + K SD + + + + + + D+ L+ NQ + +
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNL-ESLIATNNQISDITPLGILTNLDELSLNGNQLK-D 231
Query: 514 IPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALA 573
I L +L L+L++N ++ P+S +T L L L +N++ + L +TAL
Sbjct: 232 I-GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALT 286
Query: 574 SLNLSYNRLWGRIPRGN 590
+L L+ N+L P N
Sbjct: 287 NLELNENQLEDISPISN 303
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 39 IDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKL 98
+ D S L L L+SL N S I+P L LT NL +G ++I ++ L
Sbjct: 185 VSDISVLAKLTNLESLIATNNQISDITP----LGILT--NLDELSLNGNQLKDIGTLASL 238
Query: 99 THLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFS 142
T+L D D+ Q S S LTKL+ L LG S I P +
Sbjct: 239 TNL--TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA 280
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 111/261 (42%), Gaps = 57/261 (21%)
Query: 10 CCSWDGVTCDNVTGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISP--E 67
CCS+ D T ++ LDL G I ++ L LQ L F + +++
Sbjct: 367 CCSYS----DLGTNSLRHLDLS---FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSA 419
Query: 68 FLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSV 127
FL L++L YL++SYT T +D FD + LT L+
Sbjct: 420 FLSLEKLLYLDISYTN---------------TKID------------FDGIFLGLTSLNT 452
Query: 128 LNLG---WADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPH-LQELHLSSNK 183
L + + D +L F+ ++ +T LDLS + +F H LQ L++S N
Sbjct: 453 LKMAGNSFKDNTLSNVFAN---TTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNN 508
Query: 184 YLTGYLPESNWST--SLRELDLSFSNF---TGFLRN-SEELEFLDLSNNRIHGRISKSDS 237
L +L S+++ SL LD SF+ G L++ + L F +L+NN +
Sbjct: 509 LL--FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV-----ACIC 561
Query: 238 QGWKSLTYLDISNNFLTQIEQ 258
+ K L ++ FL +EQ
Sbjct: 562 EHQKFLQWVKEQKQFLVNVEQ 582
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 505 LSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILE 564
L NQ Q+ V +L LNL+HN L F +T L LDLS N+L
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 565 QLLSVTALASLNLSYNRLWGRIPRG 589
+T L L L N+L +P G
Sbjct: 176 VFDKLTQLKDLRLYQNQL-KSVPDG 199
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 111/261 (42%), Gaps = 57/261 (21%)
Query: 10 CCSWDGVTCDNVTGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISP--E 67
CCS+ D T ++ LDL G I ++ L LQ L F + +++
Sbjct: 362 CCSYS----DLGTNSLRHLDLS---FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSA 414
Query: 68 FLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSV 127
FL L++L YL++SYT T +D FD + LT L+
Sbjct: 415 FLSLEKLLYLDISYTN---------------TKID------------FDGIFLGLTSLNT 447
Query: 128 LNLG---WADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPH-LQELHLSSNK 183
L + + D +L F+ ++ +T LDLS + +F H LQ L++S N
Sbjct: 448 LKMAGNSFKDNTLSNVFAN---TTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNN 503
Query: 184 YLTGYLPESNWST--SLRELDLSFSNF---TGFLRN-SEELEFLDLSNNRIHGRISKSDS 237
L +L S+++ SL LD SF+ G L++ + L F +L+NN +
Sbjct: 504 LL--FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV-----ACIC 556
Query: 238 QGWKSLTYLDISNNFLTQIEQ 258
+ K L ++ FL +EQ
Sbjct: 557 EHQKFLQWVKEQKQFLVNVEQ 577
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 517 VLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLN 576
+ G L+ L L N LTG P +F + ++ L L NK+ + L + L +LN
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 577 LSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 611
L N++ +P +FE+ + + +++L P
Sbjct: 109 LYDNQISCVMP-----GSFEHLNSLTSLNLASNPF 138
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 21/190 (11%)
Query: 48 LLRLQSLAFNNFNGSQISP-EFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDC 106
L L +L N S+ISP F L +L L LS + L P+++ L L + +
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKMPKT--LQELRVHEN 131
Query: 107 DMTIEQKSFDLLASNLTKLSVLNLGW--ADRSLIE--PFSVLNLSSTITVLDLSGTGMRG 162
++T +KS + + L ++ V+ LG S IE F + S I + D + T +
Sbjct: 132 EITKVRKS---VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188
Query: 163 NFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFT----GFLRNSEEL 218
P P L ELHL NK +L +L LSF++ + G L N+ L
Sbjct: 189 GLP------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Query: 219 EFLDLSNNRI 228
L L+NN++
Sbjct: 243 RELHLNNNKL 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 21/190 (11%)
Query: 48 LLRLQSLAFNNFNGSQISP-EFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDC 106
L L +L N S+ISP F L +L L LS + L P+++ L L + +
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKMPKT--LQELRVHEN 131
Query: 107 DMTIEQKSFDLLASNLTKLSVLNLGW--ADRSLIE--PFSVLNLSSTITVLDLSGTGMRG 162
++T +KS + + L ++ V+ LG S IE F + S I + D + T +
Sbjct: 132 EITKVRKS---VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188
Query: 163 NFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFT----GFLRNSEEL 218
P P L ELHL NK +L +L LSF++ + G L N+ L
Sbjct: 189 GLP------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Query: 219 EFLDLSNNRI 228
L L+NN++
Sbjct: 243 RELHLNNNKL 252
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 325 PCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384
P LG LT+L ++ N+L +P G L+ L L N+L+ P L +LE
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 385 VVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFY 418
+++ NN + + L L L+ L+L+ N Y
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 516 RVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575
+V G L L+LSHN L S+P+ + AL LD+S N+L L L + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 576 NLSYNRL 582
L N L
Sbjct: 130 YLKGNEL 136
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 325 PCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384
P LG LT+L ++ N+L +P G L+ L L N+L+ P L +LE
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 385 VVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFY 418
+++ NN + + L L L+ L+L+ N Y
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 516 RVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575
+V G L L+LSHN L S+P+ + AL LD+S N+L L L + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 576 NLSYNRL 582
L N L
Sbjct: 130 YLKGNEL 136
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 325 PCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384
P LG LT+L ++ N+L +P G L+ L L N+L+ P L +LE
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 385 VVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFY 418
+++ NN + + L L L+ L+L+ N Y
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 516 RVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575
+V G L L+LSHN L S+P+ + AL LD+S N+L L L + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 576 NLSYNRL 582
L N L
Sbjct: 130 YLKGNEL 136
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 325 PCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384
P LG LT+L ++ N+L +P G L+ L L N+L+ P L +LE
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 385 VVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFY 418
+++ NN + + L L L+ L+L+ N Y
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 516 RVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575
+V G L L+LSHN L S+P+ + AL LD+S N+L L L + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 576 NLSYNRL 582
L N L
Sbjct: 130 YLKGNEL 136
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 325 PCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384
P LG LT+L ++ N+L +P G L+ L L N+L+ P L +LE
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 385 VVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFY 418
+++ NN + + L L L+ L+L+ N Y
Sbjct: 152 KLSLANNDLTELPAGLLNGLENLDTLLLQENSLY 185
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 516 RVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575
+V G L L+LSHN L S+P+ + AL LD+S N+L L L + L L
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 576 NLSYNRL 582
L N L
Sbjct: 130 YLKGNEL 136
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 325 PCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384
P LG LT+L ++ N+L +P G L+ L L N+L+ P L +LE
Sbjct: 94 PLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 385 VVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFY 418
+++ NN + + L L L+ L+L+ N Y
Sbjct: 153 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 186
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 516 RVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575
+V G L L+LSHN L S+P+ + AL LD+S N+L L L + L L
Sbjct: 72 QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 130
Query: 576 NLSYNRL 582
L N L
Sbjct: 131 YLKGNEL 137
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 78/184 (42%), Gaps = 41/184 (22%)
Query: 95 MSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLN-----LGWADRSLIEPFSVLNLS-S 148
+S+ T+L CD K +L + LTKL+ LN L D S + LN + +
Sbjct: 81 LSQNTNLTYLACD---SNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARN 137
Query: 149 TITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNF 208
T+T +D+S L EL NK +T + T L LD SF+
Sbjct: 138 TLTEIDVSHNT-------------QLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182
Query: 209 TGFLRNSEELEFLDLSNNRIHGR-------ISKSDSQGWKSLTYLDISNNFLTQIEQHPW 261
T LD+S N++ R I+K D LT+LD S+N LT+I+ P
Sbjct: 183 TE----------LDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPL 232
Query: 262 KNIT 265
+T
Sbjct: 233 TQLT 236
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 125/324 (38%), Gaps = 47/324 (14%)
Query: 68 FLRLKELTYLNL--------SYTRFSGLLPQEISHMSK-LTHLDLFDCDMTIEQKSFDLL 118
F LK L YLN+ F+GL+ + +SK T L + + LL
Sbjct: 325 FQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLL 384
Query: 119 ASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELH 178
NLTK + + S + +L+L LSG RG R IF E++
Sbjct: 385 TLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRG--LRNIF------EIY 436
Query: 179 LSSNKYLTGYLPESNWS------------TSLRELDLSFSNFTGFLRNSEELEFLDLSNN 226
LS NKYL L S+++ +L+ +D+S S F LRN L LDLSNN
Sbjct: 437 LSYNKYLQ--LSTSSFALVPSLQRLMLRRVALKNVDISPSPFRP-LRN---LTILDLSNN 490
Query: 227 RIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTR 286
I I++ +G ++L LD +N L ++ WK R N + S
Sbjct: 491 NI-ANINEDLLEGLENLEILDFQHNNLARL----WK-------RANPGGPVNFLKGLSHL 538
Query: 287 AFLFSNNKLFGQIPPSICXXXXXXXXXXXXXXXXGTIPPCLGNFSTQLTILHLNNNKLQG 346
L + +IP + + P + + T L L+L N +
Sbjct: 539 HILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITS 598
Query: 347 RIPDAFANGSCSLRSLDLNSNKLE 370
D F +L SLD+ N +
Sbjct: 599 VEKDVFGPPFQNLNSLDMRFNPFD 622
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 506 SSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQ 565
S ++ + E+ ++L K VLNL HN L+ +F T L LDL SN +H
Sbjct: 60 SISKLEPELCQILPLLK---VLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNP 116
Query: 566 LLSVTALASLNLSYNRL 582
+ L L+LS+N L
Sbjct: 117 FKNQKNLIKLDLSHNGL 133
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 103/261 (39%), Gaps = 47/261 (18%)
Query: 29 DLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISPE-FLRLKELTYLNLSYTRFSGL 87
D+ +ML+G + + ++SL S IS F +L L+L+ T GL
Sbjct: 239 DISSAMLKGLCE--------MSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGL 290
Query: 88 LPQEISHMSKLTHLDLFDCDMTIEQKSFDLL----ASNLTKLSVLNLGWADRSLIEPFSV 143
P + ++ L L + FD L A+N L+ L + + L
Sbjct: 291 -PSGMKGLNLLKKL-------VLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGC 342
Query: 144 LNLSSTITVLDLSGTGMRGN--FPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLREL 201
L + LDLS + + ++ L HLQ L+LS N+ P S + +E
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNE------PLGLQSQAFKE- 395
Query: 202 DLSFSNFTGFLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPW 261
+LE LDL+ R+H +S Q L L+++ FL QH
Sbjct: 396 -------------CPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLL 442
Query: 262 KNITV---LNLRNNTIQ-GTI 278
+ V LNL+ N Q GTI
Sbjct: 443 AGLPVLRHLNLKGNHFQDGTI 463
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 504 DLSSNQFQAE--IPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLH 559
DLS N +A L + L LNLSHN G +F LE LDL+ +LH
Sbjct: 353 DLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLH 410
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 522 KSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNR 581
KSL+ LN+S N LT +I ++ LDL SNK+ I +Q++ + AL LN++ N+
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQ 455
Query: 582 LWGRIPRG 589
L +P G
Sbjct: 456 L-KSVPDG 462
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 219 EFLDLSNNRI----HGRISKSDSQGWK---SLTYLDISNNFLTQIEQHPWKNITVLNLRN 271
+ L LS RI H RI D +K L YLD+S+N L +I HP N+ L+L
Sbjct: 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSF 99
Query: 272 NTIQG 276
N
Sbjct: 100 NAFDA 104
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 21/171 (12%)
Query: 386 VNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTG 445
++ NN++ DT G L L L+L+ N+ + + ++L+ +D+S N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS- 387
Query: 446 FLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRXXXXXXXXDL 505
DEK D + + S +T D + + DL
Sbjct: 388 ---------------YDEKKGDCSWTKSLLSLNMSSNILT----DTIFRCLPPRIKVLDL 428
Query: 506 SSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSN 556
SN+ ++ IP+ + ++L LN++ N L F +T+L+ + L +N
Sbjct: 429 HSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 113 KSFDLLASNLTKLSVLNL-----GWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNF-PR 166
+ FD ++L LS+ + G+ + E FS +N+ + +SGT M P
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN----FTVSGTRMVHMLCPS 321
Query: 167 EIFQLPHLQELHLSSNKYLTGYLPES-NWSTSLRELDLSFSNFTGFLRNSE------ELE 219
+I HL SN LT + E+ T L L L + + +E L+
Sbjct: 322 KISPFLHLD----FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377
Query: 220 FLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQ-IEQHPWKNITVLNLRNNTIQG 276
LD+S N + K D KSL L++S+N LT I + I VL+L +N I+
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS 435
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 70 RLKELTYLNLSYTRFSGL--LPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSV 127
L EL L L + L + + + M L LD+ ++ ++K D + TK S+
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD---CSWTK-SL 401
Query: 128 LNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNK 183
L+L + L + L I VLDL ++ P+++ +L LQEL+++SN+
Sbjct: 402 LSLNMSSNILTDTI-FRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQ 455
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 24/107 (22%)
Query: 145 NLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLS 204
+LS T+L++S + + +I L L+ L +S N+ ++ LD+S
Sbjct: 18 DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR--------------IQYLDIS 63
Query: 205 FSNFTGFLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNN 251
F ++ELE+LDLS H ++ K +L +LD+S N
Sbjct: 64 VFKF------NQELEYLDLS----HNKLVKISCHPTVNLKHLDLSFN 100
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 111/257 (43%), Gaps = 18/257 (7%)
Query: 334 LTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMI 393
LT ++ +NN+L P L + +N+N++ P LA+ L + + NN I
Sbjct: 65 LTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 394 GDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFV 453
D P L L LN L L SN + + + + +L+ + S N+ T P
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNT----ISDISALSGLTSLQQLSFSSNQVTDLKPLANLT 173
Query: 454 SLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRXXXXXXXXDLSSNQFQAE 513
+LE + K SD + + + + + + D+ L+ NQ + +
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNL-ESLIATNNQISDITPLGILTNLDELSLNGNQLK-D 231
Query: 514 IPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALA 573
I L +L L+L++N ++ P+S +T L L L +N++ + L +TAL
Sbjct: 232 I-GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALT 286
Query: 574 SLNLSYNRLWGRIPRGN 590
+L L+ N+L P N
Sbjct: 287 NLELNENQLEDISPISN 303
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 39 IDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKL 98
+ D S L L L+SL N S I+P L LT NL +G ++I ++ L
Sbjct: 185 VSDISVLAKLTNLESLIATNNQISDITP----LGILT--NLDELSLNGNQLKDIGTLASL 238
Query: 99 THLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFS 142
T+L D D+ Q S S LTKL+ L LG S I P +
Sbjct: 239 TNL--TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA 280
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 111/257 (43%), Gaps = 18/257 (7%)
Query: 334 LTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMI 393
LT ++ +NN+L P L + +N+N++ P LA+ L + + NN I
Sbjct: 65 LTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 394 GDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFV 453
D P L L LN L L SN + + + + +L+ + S N+ T P
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNT----ISDISALSGLTSLQQLSFSSNQVTDLKPLANLT 173
Query: 454 SLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRXXXXXXXXDLSSNQFQAE 513
+LE + K SD + + + + + + D+ L+ NQ + +
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNL-ESLIATNNQISDITPLGILTNLDELSLNGNQLK-D 231
Query: 514 IPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALA 573
I L +L L+L++N ++ P+S +T L L L +N++ + L +TAL
Sbjct: 232 I-GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISN--ISPLAGLTALT 286
Query: 574 SLNLSYNRLWGRIPRGN 590
+L L+ N+L P N
Sbjct: 287 NLELNENQLEDISPISN 303
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 39 IDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKL 98
+ D S L L L+SL N S I+P L LT NL +G ++I ++ L
Sbjct: 185 VSDISVLAKLTNLESLIATNNQISDITP----LGILT--NLDELSLNGNQLKDIGTLASL 238
Query: 99 THLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFS 142
T+L D D+ Q S S LTKL+ L LG S I P +
Sbjct: 239 TNL--TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA 280
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 241 KSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKL--FGQ 298
+SLT+LD+S N + + + P N+ LN +N I+ + PPS SNNKL
Sbjct: 277 QSLTFLDVSENIFSGLSELP-PNLYYLNASSNEIRSLCDL-PPSLEELNVSNNKLIELPA 334
Query: 299 IPPSI 303
+PP +
Sbjct: 335 LPPRL 339
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 332 TQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNN 391
T +T+L+L +N+L+ R+P A L SLD+ N + P L+V+N+ +N
Sbjct: 30 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 88
Query: 392 MIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHN 441
+ L L L SN ++N + L +DLSHN
Sbjct: 89 ELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNNPFVKQKNLITLDLSHN 136
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%)
Query: 504 DLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRIL 563
D+ N P + L VLNL HN L+ +FA T L L L SN +
Sbjct: 60 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 119
Query: 564 EQLLSVTALASLNLSYNRL 582
+ L +L+LS+N L
Sbjct: 120 NPFVKQKNLITLDLSHNGL 138
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 332 TQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNN 391
T +T+L+L +N+L+ R+P A L SLD+ N + P L+V+N+ +N
Sbjct: 35 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 93
Query: 392 MIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHN 441
+ L L L SN ++N + L +DLSHN
Sbjct: 94 ELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNNPFVKQKNLITLDLSHN 141
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%)
Query: 504 DLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRIL 563
D+ N P + L VLNL HN L+ +FA T L L L SN +
Sbjct: 65 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 124
Query: 564 EQLLSVTALASLNLSYNRL 582
+ L +L+LS+N L
Sbjct: 125 NPFVKQKNLITLDLSHNGL 143
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 332 TQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNN 391
T +T+L+L +N+L+ R+P A L SLD+ N + P L+V+N+ +N
Sbjct: 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 392 MIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHN 441
+ L L L SN ++N + L +DLSHN
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNNPFVKQKNLITLDLSHN 131
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%)
Query: 504 DLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRIL 563
D+ N P + L VLNL HN L+ +FA T L L L SN +
Sbjct: 55 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114
Query: 564 EQLLSVTALASLNLSYNRL 582
+ L +L+LS+N L
Sbjct: 115 NPFVKQKNLITLDLSHNGL 133
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 68 FLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDM-TIEQKSFDLLASNLTKLS 126
F L +LTYLNL+ + + L ++KLTHL L + +I FD L S LT +
Sbjct: 60 FDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKS-LTHIY 118
Query: 127 VLNLGW 132
+ N W
Sbjct: 119 LFNNPW 124
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 47 HLLRLQSLAFNNFNGSQI-SPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFD 105
HL+ LQ L FN+ + I + F +L +LT L+L+ + ++ LTH+ L++
Sbjct: 55 HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114
Query: 106 CDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSV 143
E + L + + + + + W +++ +P S
Sbjct: 115 NPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSA 152
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 210 GFLRNSEELEFLDLSNN-RIHGRISKSDSQG-WKSLTYLDISNNFLTQIEQH-----PWK 262
F ++ + LEFLDLS N + + S +G W SL L +S N L +++ K
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387
Query: 263 NITVLNLRNNTIQ 275
N+T L++ NT
Sbjct: 388 NLTSLDISRNTFH 400
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 172 PHLQEL-HLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGFLRN-SEELEFLDLSNNRIH 229
PH +L H S + P WS++L L+LSF+ + +L LDLS+NR++
Sbjct: 226 PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLN 285
Query: 230 GRISKSD 236
R + D
Sbjct: 286 -RAPQPD 291
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 210 GFLRNSEELEFLDLSNN-RIHGRISKSDSQG-WKSLTYLDISNNFLTQIEQH-----PWK 262
F ++ + LEFLDLS N + + S +G W SL L +S N L +++ K
Sbjct: 354 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 413
Query: 263 NITVLNLRNNTIQ 275
N+T L++ NT
Sbjct: 414 NLTSLDISRNTFH 426
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 79/195 (40%), Gaps = 21/195 (10%)
Query: 360 RSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYG 419
R LDL N+++ A LE + + N++ P L L L LRSNR
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-- 92
Query: 420 PLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQ 479
L + L +D+S N+ L ++F L +K+++ +D +Y+
Sbjct: 93 KLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 480 DSVTVTVKGRDVVLKRXXXXXXXXDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIP 539
+S+ + L++ +L+S +A L LIVL L H +
Sbjct: 152 NSL------EQLTLEK-------CNLTSIPTEA-----LSHLHGLIVLRLRHLNINAIRD 193
Query: 540 VSFANMTALESLDLS 554
SF + L+ L++S
Sbjct: 194 YSFKRLYRLKVLEIS 208
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 518 LGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNK-----LHGRILEQLLSVTAL 572
L ++ L+ ++LS+N L + F M LE L +S+N+ L+G+ + L
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ------PIPTL 297
Query: 573 ASLNLSYNRLWGRIPRGNQFNTFEN 597
L+LS+N L QF+ EN
Sbjct: 298 KVLDLSHNHLLHVERNQPQFDRLEN 322
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 505 LSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILE 564
L NQ Q+ V +L L L HN L F +T L LDL +N+L
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 565 QLLSVTALASLNLSYNRLWGRIPRG 589
+T L L+L+ N+L +P G
Sbjct: 176 VFDKLTQLKQLSLNDNQL-KSVPDG 199
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 518 LGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNK-----LHGRILEQLLSVTAL 572
L ++ L+ ++LS+N L + F M LE L +S+N+ L+G+ + L
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ------PIPTL 303
Query: 573 ASLNLSYNRLWGRIPRGNQFNTFEN 597
L+LS+N L QF+ EN
Sbjct: 304 KVLDLSHNHLLHVERNQPQFDRLEN 328
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%)
Query: 515 PRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALAS 574
P V + L VL L N L+ F N L +L +S+N L + + T+L +
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175
Query: 575 LNLSYNRL 582
L LS NRL
Sbjct: 176 LQLSSNRL 183
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 526 VLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGR 585
VL L N +T P F +T L LDL +N+L +T L L+L+ N+L
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KS 92
Query: 586 IPRGNQFNTFENDSYIGNIHLCGEP 610
IPRG F+N + +I L P
Sbjct: 93 IPRG----AFDNLKSLTHIWLLNNP 113
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 39 IDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKL 98
+ D S L L L+SL N S I+P L LT NL +G ++I ++ L
Sbjct: 188 VSDISVLAKLTNLESLIATNNQISDITP----LGILT--NLDELSLNGNQLKDIGTLASL 241
Query: 99 THLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVL 144
T+L D D+ Q S S LTKL+ L LG S I P + L
Sbjct: 242 TNL--TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL 285
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 542 FANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRG 589
AN+T LE LD+SSNK+ + L +T L SL + N++ P G
Sbjct: 172 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 217
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 39 IDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKL 98
+ D S L L L+SL N S I+P L LT NL +G ++I ++ L
Sbjct: 189 VSDISVLAKLTNLESLIATNNQISDITP----LGILT--NLDELSLNGNQLKDIGTLASL 242
Query: 99 THLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVL 144
T+L D D+ Q S S LTKL+ L LG S I P + L
Sbjct: 243 TNL--TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL 286
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 542 FANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRG 589
AN+T LE LD+SSNK+ + L +T L SL + N++ P G
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 218
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 526 VLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGR 585
VL L N +T P F +T L LDL +N+L +T L L+L+ N+L
Sbjct: 34 VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KS 92
Query: 586 IPRGNQFNTFENDSYIGNIHLCGEP 610
IPRG F+N + +I L P
Sbjct: 93 IPRG----AFDNLRSLTHIWLLNNP 113
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 526 VLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGR 585
VL L N +T P F +T L LDL +N+L +T L L+L+ N+L
Sbjct: 42 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KS 100
Query: 586 IPRGNQFNTFENDSYIGNIHLCGEP 610
IPRG F+N + +I L P
Sbjct: 101 IPRG----AFDNLKSLTHIWLLNNP 121
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 39 IDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKL 98
+ D S L L L+SL N S I+P L LT NL +G ++I ++ L
Sbjct: 184 VSDISVLAKLTNLESLIATNNQISDITP----LGILT--NLDELSLNGNQLKDIGTLASL 237
Query: 99 THLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVL 144
T+L D D+ Q S S LTKL+ L LG S I P + L
Sbjct: 238 TNL--TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL 281
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 542 FANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRG 589
AN+T LE LD+SSNK+ + L +T L SL + N++ P G
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 213
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 16/133 (12%)
Query: 332 TQLTILH---LNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNV 388
T+LT LH L++N L +AF +LR LDL+SN L +D LEV+ +
Sbjct: 61 TRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119
Query: 389 GNNMIGDTFPSWLGCLPGLNILVLRSN---RFYGPLCESNIMFPFQALRIIDLSHNEFTG 445
NN I + + L L L N RF L + P L ++DLS N+
Sbjct: 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP--KLMLLDLSSNKLKK 177
Query: 446 F-------LPRWI 451
LP W+
Sbjct: 178 LPLTDLQKLPAWV 190
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 542 FANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRG 589
AN+T LE LD+SSNK+ + L +T L SL + N++ P G
Sbjct: 168 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 213
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 39 IDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKL 98
+ D S L L L+SL N S I+P L LT NL +G ++I ++ L
Sbjct: 184 VSDISVLAKLTNLESLIATNNQISDITP----LGILT--NLDELSLNGNQLKDIGTLASL 237
Query: 99 THLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVL 144
T+L D D+ Q S S LTKL+ L LG S I P + L
Sbjct: 238 TNL--TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL 281
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 332 TQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLE 370
T+LTIL+L+ NKLQ +P+ + L+ L L++N+L+
Sbjct: 76 TKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLK 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,726,934
Number of Sequences: 62578
Number of extensions: 716768
Number of successful extensions: 1936
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1341
Number of HSP's gapped (non-prelim): 474
length of query: 615
length of database: 14,973,337
effective HSP length: 105
effective length of query: 510
effective length of database: 8,402,647
effective search space: 4285349970
effective search space used: 4285349970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)