Query 045619
Match_columns 615
No_of_seqs 266 out of 3575
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:49:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.1E-57 4.6E-62 517.7 41.6 552 1-610 48-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.6E-48 3.5E-53 444.9 35.1 506 50-610 70-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.2E-35 2.6E-40 288.0 7.5 371 175-611 81-457 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.3E-34 2.8E-39 280.8 10.1 370 73-454 79-462 (873)
5 KOG0618 Serine/threonine phosp 100.0 2E-32 4.4E-37 279.6 -4.6 481 28-582 3-488 (1081)
6 KOG0472 Leucine-rich repeat pr 100.0 2.8E-33 6E-38 260.1 -10.4 219 24-276 69-289 (565)
7 KOG0472 Leucine-rich repeat pr 100.0 2E-32 4.3E-37 254.4 -7.8 477 68-606 41-541 (565)
8 KOG0618 Serine/threonine phosp 100.0 3.8E-31 8.2E-36 270.4 -1.5 497 9-580 6-510 (1081)
9 KOG0444 Cytoskeletal regulator 99.9 1.2E-28 2.5E-33 241.4 -2.4 364 69-559 4-375 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 2.9E-27 6.3E-32 231.7 -1.8 358 23-393 7-374 (1255)
11 PLN03210 Resistant to P. syrin 99.9 3.6E-21 7.7E-26 220.3 26.5 367 21-417 530-905 (1153)
12 PLN03210 Resistant to P. syrin 99.8 1.6E-19 3.5E-24 206.8 25.4 59 498-557 846-904 (1153)
13 KOG4237 Extracellular matrix p 99.8 9.4E-23 2E-27 190.1 -3.5 414 148-580 67-498 (498)
14 KOG4237 Extracellular matrix p 99.8 2.1E-21 4.7E-26 181.1 -1.0 286 282-611 66-364 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.1E-18 2.3E-23 185.5 17.9 268 216-569 201-468 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.8E-18 3.8E-23 183.8 18.9 263 241-588 201-463 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 1E-16 2.2E-21 171.7 14.6 244 244-559 181-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 1E-16 2.3E-21 171.6 11.9 245 218-535 180-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.6 1.8E-17 3.9E-22 165.3 0.4 84 498-581 221-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.6 1.9E-17 4.1E-22 165.1 -0.7 262 302-604 18-318 (319)
21 KOG0617 Ras suppressor protein 99.5 4.7E-16 1E-20 128.9 -3.6 181 333-588 34-217 (264)
22 KOG0617 Ras suppressor protein 99.4 3.7E-15 8E-20 123.6 -4.0 138 41-185 25-163 (264)
23 KOG3207 Beta-tubulin folding c 99.2 6.7E-12 1.4E-16 119.9 2.3 210 357-585 121-341 (505)
24 KOG3207 Beta-tubulin folding c 99.2 4.2E-12 9.2E-17 121.2 0.5 187 69-257 118-317 (505)
25 PLN03150 hypothetical protein; 99.1 1.3E-10 2.9E-15 124.6 7.7 112 499-610 419-532 (623)
26 PLN03150 hypothetical protein; 99.1 7.9E-10 1.7E-14 118.7 12.4 128 3-159 391-526 (623)
27 KOG1909 Ran GTPase-activating 99.0 3.1E-11 6.8E-16 112.3 -0.2 89 494-582 209-310 (382)
28 KOG1909 Ran GTPase-activating 99.0 3.1E-11 6.7E-16 112.3 -1.1 240 68-320 26-311 (382)
29 KOG1259 Nischarin, modulator o 98.9 7.7E-10 1.7E-14 100.7 2.7 104 497-605 306-411 (490)
30 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.5E-14 78.4 2.9 61 522-582 1-61 (61)
31 PF14580 LRR_9: Leucine-rich r 98.9 2.9E-09 6.4E-14 93.1 5.3 127 333-464 20-148 (175)
32 COG4886 Leucine-rich repeat (L 98.8 4.4E-09 9.5E-14 108.0 6.6 83 500-586 211-293 (394)
33 PF14580 LRR_9: Leucine-rich r 98.8 2.7E-09 5.9E-14 93.3 4.2 103 497-604 18-124 (175)
34 PF13855 LRR_8: Leucine rich r 98.8 2.6E-09 5.7E-14 76.6 3.1 61 498-558 1-61 (61)
35 KOG1259 Nischarin, modulator o 98.8 1.4E-09 3.1E-14 99.0 1.1 127 213-345 281-412 (490)
36 KOG4658 Apoptotic ATPase [Sign 98.8 2.5E-08 5.5E-13 109.5 10.0 93 497-589 769-866 (889)
37 KOG0532 Leucine-rich repeat (L 98.8 6.9E-10 1.5E-14 109.8 -2.0 191 335-581 78-271 (722)
38 KOG4658 Apoptotic ATPase [Sign 98.8 6E-09 1.3E-13 114.4 4.8 148 23-179 523-675 (889)
39 KOG0532 Leucine-rich repeat (L 98.7 2.9E-10 6.4E-15 112.3 -5.2 172 358-583 76-247 (722)
40 KOG2120 SCF ubiquitin ligase, 98.7 4.3E-10 9.4E-15 102.3 -5.0 94 494-591 309-406 (419)
41 COG4886 Leucine-rich repeat (L 98.7 4.1E-08 9E-13 100.8 7.2 177 241-449 116-295 (394)
42 KOG0531 Protein phosphatase 1, 98.6 6.4E-09 1.4E-13 106.8 -0.4 222 333-588 96-323 (414)
43 KOG4341 F-box protein containi 98.5 1.3E-09 2.8E-14 103.9 -7.0 264 303-584 160-440 (483)
44 KOG2982 Uncharacterized conser 98.5 5.5E-08 1.2E-12 88.9 3.6 180 95-276 70-263 (418)
45 KOG0531 Protein phosphatase 1, 98.5 1.3E-08 2.9E-13 104.5 -1.2 65 497-563 254-322 (414)
46 KOG2120 SCF ubiquitin ligase, 98.5 5.3E-09 1.2E-13 95.3 -4.8 184 357-583 185-376 (419)
47 KOG4341 F-box protein containi 98.5 3.3E-09 7.1E-14 101.3 -6.6 58 404-462 400-458 (483)
48 COG5238 RNA1 Ran GTPase-activa 98.4 4.1E-08 9E-13 88.5 -1.1 238 68-320 26-316 (388)
49 KOG2982 Uncharacterized conser 98.3 4.7E-07 1E-11 82.9 2.9 65 496-560 197-263 (418)
50 KOG1859 Leucine-rich repeat pr 98.2 9.5E-08 2.1E-12 97.6 -3.9 87 494-583 205-292 (1096)
51 KOG1859 Leucine-rich repeat pr 98.1 7.4E-08 1.6E-12 98.3 -7.5 183 65-255 102-293 (1096)
52 COG5238 RNA1 Ran GTPase-activa 97.9 2.7E-06 5.9E-11 77.0 0.5 239 92-345 26-316 (388)
53 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.6E-10 52.5 2.8 34 524-558 3-36 (44)
54 KOG4579 Leucine-rich repeat (L 97.8 2.1E-06 4.5E-11 69.5 -1.7 108 497-608 52-160 (177)
55 PF12799 LRR_4: Leucine Rich r 97.8 2.6E-05 5.6E-10 50.9 3.0 37 546-583 1-37 (44)
56 PRK15386 type III secretion pr 97.7 0.00039 8.4E-09 69.0 11.4 136 238-391 49-187 (426)
57 KOG4579 Leucine-rich repeat (L 97.7 2.6E-06 5.7E-11 68.9 -3.2 104 498-604 27-134 (177)
58 PRK15386 type III secretion pr 97.7 0.00025 5.4E-09 70.3 9.6 33 497-532 155-187 (426)
59 KOG3665 ZYG-1-like serine/thre 97.6 1.5E-05 3.3E-10 85.7 0.9 154 307-462 122-281 (699)
60 KOG3665 ZYG-1-like serine/thre 97.6 1.9E-05 4.1E-10 84.9 1.2 83 95-182 147-230 (699)
61 KOG1644 U2-associated snRNP A' 97.5 0.00024 5.1E-09 62.0 6.3 90 212-319 60-152 (233)
62 KOG1644 U2-associated snRNP A' 97.4 0.00021 4.5E-09 62.3 5.0 83 499-583 43-126 (233)
63 KOG1947 Leucine rich repeat pr 97.1 9.3E-05 2E-09 78.4 -1.3 83 491-583 355-440 (482)
64 PF13306 LRR_5: Leucine rich r 97.0 0.0023 5E-08 53.8 6.9 38 376-414 7-44 (129)
65 KOG1947 Leucine rich repeat pr 96.8 0.00013 2.9E-09 77.2 -2.5 38 522-559 401-440 (482)
66 KOG2739 Leucine-rich acidic nu 96.8 0.00081 1.8E-08 61.4 2.9 105 48-155 42-150 (260)
67 PF13306 LRR_5: Leucine rich r 96.8 0.0049 1.1E-07 51.8 7.2 105 303-414 8-112 (129)
68 KOG2739 Leucine-rich acidic nu 96.7 0.0014 3.1E-08 59.8 3.4 106 357-465 43-152 (260)
69 KOG2123 Uncharacterized conser 96.7 0.00021 4.5E-09 65.4 -1.9 80 495-576 38-123 (388)
70 KOG2123 Uncharacterized conser 96.5 0.00011 2.4E-09 67.1 -4.8 100 358-462 20-123 (388)
71 PF00560 LRR_1: Leucine Rich R 94.8 0.012 2.7E-07 31.7 0.8 11 549-559 3-13 (22)
72 KOG4308 LRR-containing protein 94.3 0.00039 8.5E-09 71.7 -10.8 84 334-417 89-184 (478)
73 KOG3864 Uncharacterized conser 94.2 0.0096 2.1E-07 52.3 -0.8 82 500-581 103-187 (221)
74 PF00560 LRR_1: Leucine Rich R 94.0 0.018 3.9E-07 31.0 0.3 21 73-94 1-21 (22)
75 KOG3864 Uncharacterized conser 92.9 0.033 7.1E-07 49.1 0.3 86 381-466 101-186 (221)
76 PF08263 LRRNT_2: Leucine rich 92.8 0.065 1.4E-06 34.7 1.5 19 1-19 23-43 (43)
77 PF13516 LRR_6: Leucine Rich r 91.6 0.11 2.3E-06 28.7 1.2 21 546-566 2-22 (24)
78 PF13504 LRR_7: Leucine rich r 90.8 0.14 3E-06 25.5 1.0 10 548-557 3-12 (17)
79 smart00369 LRR_TYP Leucine-ric 89.8 0.3 6.5E-06 27.4 2.1 20 546-565 2-21 (26)
80 smart00370 LRR Leucine-rich re 89.8 0.3 6.5E-06 27.4 2.1 20 546-565 2-21 (26)
81 KOG4308 LRR-containing protein 88.7 0.0054 1.2E-07 63.4 -10.0 87 98-184 89-184 (478)
82 KOG0473 Leucine-rich repeat pr 88.4 0.04 8.7E-07 49.5 -3.3 84 22-109 41-124 (326)
83 smart00369 LRR_TYP Leucine-ric 84.0 0.99 2.1E-05 25.2 2.0 16 72-87 2-17 (26)
84 smart00370 LRR Leucine-rich re 84.0 0.99 2.1E-05 25.2 2.0 16 72-87 2-17 (26)
85 KOG0473 Leucine-rich repeat pr 82.1 0.051 1.1E-06 48.9 -5.7 83 47-134 40-122 (326)
86 KOG4242 Predicted myosin-I-bin 76.5 11 0.00024 38.3 7.6 140 308-449 215-372 (553)
87 smart00368 LRR_RI Leucine rich 76.3 2.4 5.1E-05 24.3 1.9 18 546-563 2-19 (28)
88 KOG4242 Predicted myosin-I-bin 75.0 6.1 0.00013 40.0 5.5 61 523-583 414-481 (553)
89 smart00365 LRR_SD22 Leucine-ri 71.3 3.6 7.8E-05 23.1 1.8 14 546-559 2-15 (26)
90 smart00367 LRR_CC Leucine-rich 62.3 6.6 0.00014 21.9 1.7 12 546-557 2-13 (26)
91 smart00364 LRR_BAC Leucine-ric 58.1 7.5 0.00016 21.9 1.4 13 523-535 3-15 (26)
92 KOG3763 mRNA export factor TAP 50.6 6 0.00013 40.9 0.5 35 238-272 215-254 (585)
93 KOG3763 mRNA export factor TAP 45.0 12 0.00026 38.9 1.5 66 494-560 214-284 (585)
94 TIGR00864 PCC polycystin catio 32.2 27 0.00059 43.9 2.0 33 528-560 1-33 (2740)
95 TIGR00864 PCC polycystin catio 20.6 70 0.0015 40.7 2.6 32 504-535 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.1e-57 Score=517.73 Aligned_cols=552 Identities=33% Similarity=0.521 Sum_probs=467.6
Q ss_pred CCCCCCCCCCcccceeeeCCCCCcEEEEecCCCCceeecCCcccccccccccccccccccCC-CCChhhh-cCCCCceee
Q 045619 1 TTSWAEGTDCCSWDGVTCDNVTGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGS-QISPEFL-RLKELTYLN 78 (615)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~-~l~~~l~-~l~~L~~L~ 78 (615)
+.+|....+||.|+|++|.. .++|++|+++++.+.|..+. .+..+++|++|++.++... .+|..+. .+++|++|+
T Consensus 48 ~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~ 124 (968)
T PLN00113 48 LSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124 (968)
T ss_pred CCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEE
Confidence 35799899999999999975 36999999999999987765 7888999999999887654 5787654 899999999
Q ss_pred CCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCC
Q 045619 79 LSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGT 158 (615)
Q Consensus 79 L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~ 158 (615)
+++|.+++..|. ..+++|++|++++|.+. ..+|..++++++|++|++++|.+....|..+..+ ++|++|++++|
T Consensus 125 Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n 198 (968)
T PLN00113 125 LSNNNFTGSIPR--GSIPNLETLDLSNNMLS---GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL-TSLEFLTLASN 198 (968)
T ss_pred CcCCccccccCc--cccCCCCEEECcCCccc---ccCChHHhcCCCCCEEECccCcccccCChhhhhC-cCCCeeeccCC
Confidence 999999877774 56899999999999886 6778889999999999999999888888888888 99999999999
Q ss_pred CCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCccc----cccCCCCcCEEecCCcccCccccc
Q 045619 159 GMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTG----FLRNSEELEFLDLSNNRIHGRISK 234 (615)
Q Consensus 159 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~ 234 (615)
.+.+..|..++++++|+.|++++|.+.......+..+++|++|++++|.+.+ .+..+++|++|++++|.+.+.++.
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch
Confidence 9988889999999999999999997655444556677899999999887654 367788999999999988766665
Q ss_pred ccccCCCcCcEEEccCCcccCcCC---CCCCCCcEEEcCCCccccccCCC---CCCceEEEccCCcccccCcccccCCCc
Q 045619 235 SDSQGWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLRNNTIQGTILVP---PPSTRAFLFSNNKLFGQIPPSICSLSS 308 (615)
Q Consensus 235 ~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~ 308 (615)
.. ..+++|++|++++|.+....+ ..+++|+.|++++|.+.+..+.. +++|+.|++++|.+.+..|..+..+++
T Consensus 279 ~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~ 357 (968)
T PLN00113 279 SI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357 (968)
T ss_pred hH-hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCC
Confidence 54 778899999999988876544 45678888888888887665443 788888888888888788888888888
Q ss_pred cceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEc
Q 045619 309 LEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNV 388 (615)
Q Consensus 309 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 388 (615)
|+.|++++|.+.+..|..+.... +|+.|++++|.+.+..|..+... ++|+.|++++|.+++..|..+..++.|+.|++
T Consensus 358 L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 435 (968)
T PLN00113 358 LTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGAC-RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435 (968)
T ss_pred CcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHHhCC-CCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence 88888888888777777776654 78888888888887777766554 78888888888888778888888888888888
Q ss_pred CCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCC
Q 045619 389 GNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDG 468 (615)
Q Consensus 389 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~ 468 (615)
++|.+++..+..+..+++|+.|++++|++.+..+.. ...++|+.|++++|.+.+..|..+
T Consensus 436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~---~~~~~L~~L~ls~n~l~~~~~~~~----------------- 495 (968)
T PLN00113 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS---FGSKRLENLDLSRNQFSGAVPRKL----------------- 495 (968)
T ss_pred cCCcccCccChhhccCCCCcEEECcCceeeeecCcc---cccccceEEECcCCccCCccChhh-----------------
Confidence 888888888888888888888888888877654443 235788888888888877666432
Q ss_pred ccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCC
Q 045619 469 LYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTAL 548 (615)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 548 (615)
..+++|+.|++++|++.+..|..+..+++|++|+|++|.+++.+|..|..+++|
T Consensus 496 --------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 549 (968)
T PLN00113 496 --------------------------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549 (968)
T ss_pred --------------------------hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccC
Confidence 235679999999999999999999999999999999999999999999999999
Q ss_pred CEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCCCCCCCccCcccCCCcCccCCC
Q 045619 549 ESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEP 610 (615)
Q Consensus 549 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 610 (615)
+.|++++|++.+.+|..+.++++|+.+++++|++.+.+|+.+++.++...++.||+.+|+.+
T Consensus 550 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-48 Score=444.85 Aligned_cols=506 Identities=31% Similarity=0.449 Sum_probs=378.5
Q ss_pred cccccccccccCC-CCChhhhcCCCCceeeCCCCccCCCCchhhh-cCCCCcEEecCCCcCccccCcchhhccCCCCCCE
Q 045619 50 RLQSLAFNNFNGS-QISPEFLRLKELTYLNLSYTRFSGLLPQEIS-HMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSV 127 (615)
Q Consensus 50 ~L~~L~~~~~~~~-~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~ 127 (615)
+++.|++.+.... .++..|..+++|++|++++|.+.+.+|..+. .+.+|++|++++|.+. +.+|. ..+++|++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~---~~~p~--~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT---GSIPR--GSIPNLET 144 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc---cccCc--cccCCCCE
Confidence 5666666554322 2566788888888888888888766776554 7888888888888775 33443 45778888
Q ss_pred EecccccCCCCCchhhhcccccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCC
Q 045619 128 LNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSN 207 (615)
Q Consensus 128 L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 207 (615)
|++++|.+....+..+..+ ++|++|++++|.+.+..|..+.++++|++|++++|.+.......+..+++|++|++++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSF-SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcC-CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 8888888777777777777 888888888888777777778888888888888886554444455666778888887776
Q ss_pred ccc----cccCCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCC---CCCCCCcEEEcCCCccccccCC
Q 045619 208 FTG----FLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLRNNTIQGTILV 280 (615)
Q Consensus 208 ~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~ 280 (615)
+.. .+..+++|++|++++|.+.+.++... ..+++|+.|++++|.+....+ ..+++|+.|++++|.+.+..+.
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 653 35667788888888877765555543 777778888888777765443 3456777777777777665543
Q ss_pred C---CCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCC
Q 045619 281 P---PPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSC 357 (615)
Q Consensus 281 ~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~ 357 (615)
. +++|+.|++.+|.+.+..|..+..+++|+.|++++|.+.+.+|..+.... +|+.|++++|.+.+..|..+... +
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~-~ 380 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSS-G 380 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCc-C
Confidence 2 66777777777777777777777777777777777777666666665554 67777777777766666655443 6
Q ss_pred cccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEE
Q 045619 358 SLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIID 437 (615)
Q Consensus 358 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 437 (615)
+|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..++.|+.+++++|.+.+..+.. +..+++|+.|+
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~ 458 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR--KWDMPSLQMLS 458 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh--hccCCCCcEEE
Confidence 7777777777777677777777777777777777777777777777777777777777766533322 24567777777
Q ss_pred ccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCcc
Q 045619 438 LSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRV 517 (615)
Q Consensus 438 l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 517 (615)
+++|.+.+..|..+ ..++|+.|++++|++.+..|..
T Consensus 459 L~~n~~~~~~p~~~--------------------------------------------~~~~L~~L~ls~n~l~~~~~~~ 494 (968)
T PLN00113 459 LARNKFFGGLPDSF--------------------------------------------GSKRLENLDLSRNQFSGAVPRK 494 (968)
T ss_pred CcCceeeeecCccc--------------------------------------------ccccceEEECcCCccCCccChh
Confidence 77777665554321 1356999999999999999999
Q ss_pred ccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCCCC-CCCcc
Q 045619 518 LGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQ-FNTFE 596 (615)
Q Consensus 518 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~-~~~~~ 596 (615)
+..+++|++|+|++|++++.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|++++|++.+.+|.... +++++
T Consensus 495 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998644 78899
Q ss_pred CcccCCCcCccCCC
Q 045619 597 NDSYIGNIHLCGEP 610 (615)
Q Consensus 597 ~~~~~~~~~~~~~~ 610 (615)
.+.+.+|+..+.-|
T Consensus 575 ~l~ls~N~l~~~~p 588 (968)
T PLN00113 575 QVNISHNHLHGSLP 588 (968)
T ss_pred EEeccCCcceeeCC
Confidence 99999998776444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-35 Score=288.04 Aligned_cols=371 Identities=25% Similarity=0.266 Sum_probs=271.4
Q ss_pred cEEEcccCCCccccCCCCCCCCCccEEECCCCCcccc---ccCCCCcCEEecCCcccCcccccccccCCCcCcEEEccCC
Q 045619 175 QELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGF---LRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNN 251 (615)
Q Consensus 175 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 251 (615)
++|++++|++.......+..+++|+++++..|.++.+ .....+++.|++.+|.|+ .+.....+.++.|++|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhc
Confidence 3344444444333333334444444444444433322 233445667777777666 444444466777777777777
Q ss_pred cccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccc
Q 045619 252 FLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFS 331 (615)
Q Consensus 252 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 331 (615)
.+++++...|+. -.++++|++++|.|+......|.++.+|..|.++.|.++ .+|...|+..
T Consensus 160 ~is~i~~~sfp~------------------~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L 220 (873)
T KOG4194|consen 160 LISEIPKPSFPA------------------KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRL 220 (873)
T ss_pred hhhcccCCCCCC------------------CCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhc
Confidence 777666544431 123334444444444455567788889999999999998 8887777744
Q ss_pred cCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEE
Q 045619 332 TQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILV 411 (615)
Q Consensus 332 ~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 411 (615)
++|+.|+|..|.|. ......+.++++|+.|.+..|.|......+|.++.++++|+|+.|++.....+|+.+++.|+.|+
T Consensus 221 ~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 221 PKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred chhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence 58999999999886 33334445668999999999999877778899999999999999999888889999999999999
Q ss_pred ccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchh
Q 045619 412 LRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDV 491 (615)
Q Consensus 412 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (615)
++.|.|..... .....+++|+.||++.|.++..-+.
T Consensus 300 lS~NaI~rih~--d~WsftqkL~~LdLs~N~i~~l~~~------------------------------------------ 335 (873)
T KOG4194|consen 300 LSYNAIQRIHI--DSWSFTQKLKELDLSSNRITRLDEG------------------------------------------ 335 (873)
T ss_pred cchhhhheeec--chhhhcccceeEeccccccccCChh------------------------------------------
Confidence 99999876333 3446789999999999999843332
Q ss_pred hHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccC---CccccCCCCCCEEeCCCCcccccchhhhhh
Q 045619 492 VLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSI---PVSFANMTALESLDLSSNKLHGRILEQLLS 568 (615)
Q Consensus 492 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 568 (615)
.++.+..|++|+++.|.+......+|..+++|++|+|++|.++..+ ...|..+++|++|++.+|++..+...+|.+
T Consensus 336 -sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg 414 (873)
T KOG4194|consen 336 -SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG 414 (873)
T ss_pred -HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhcc
Confidence 2344566888999999998878888999999999999999887544 345788999999999999999888889999
Q ss_pred cCcCCeEEcccccceecCCCCCCCCCccCcccCCCcCccCCCC
Q 045619 569 VTALASLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 611 (615)
Q Consensus 569 l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 611 (615)
+++|+.|++.+|.|...=|.-+..-.++.|-+...--+|||-+
T Consensus 415 l~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 415 LEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQL 457 (873)
T ss_pred CcccceecCCCCcceeecccccccchhhhhhhcccceEEeccH
Confidence 9999999999999986666666666888888888888888854
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-34 Score=280.82 Aligned_cols=370 Identities=22% Similarity=0.195 Sum_probs=281.5
Q ss_pred CCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccE
Q 045619 73 ELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITV 152 (615)
Q Consensus 73 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~ 152 (615)
.-+.||+++|.+..+.+..|.++++|+.+++.+|.++ .+|....-..+|+.|+|.+|-+.......+..+ +.|+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt----~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l-~alrs 153 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT----RIPRFGHESGHLEKLDLRHNLISSVTSEELSAL-PALRS 153 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh----hcccccccccceeEEeeeccccccccHHHHHhH-hhhhh
Confidence 4667888888888787878888888888888888874 667666777778888888888888877777777 88888
Q ss_pred EEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCcccc----ccCCCCcCEEecCCccc
Q 045619 153 LDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGF----LRNSEELEFLDLSNNRI 228 (615)
Q Consensus 153 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~~ 228 (615)
||++.|.|.......+..-.++++|++++|.+.......+..+.+|..|.++.|.++.. +..+++|+.|++..|++
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 88888888754445566667888888888888877777777778888888888887763 66788888888888888
Q ss_pred CcccccccccCCCcCcEEEccCCcccCcCCCC---CCCCcEEEcCCCccccccCCC---CCCceEEEccCCcccccCccc
Q 045619 229 HGRISKSDSQGWKSLTYLDISNNFLTQIEQHP---WKNITVLNLRNNTIQGTILVP---PPSTRAFLFSNNKLFGQIPPS 302 (615)
Q Consensus 229 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~i~~~~~~~---~~~L~~L~l~~~~~~~~~~~~ 302 (615)
. .+....|.++++|+.|.+.+|++..+..+. +.+++.|+++.|++....-.+ ++.|+.|++++|.|....++.
T Consensus 234 r-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 234 R-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred e-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 6 454566788888888888888888777643 467888888888776544333 788888888888888888888
Q ss_pred ccCCCccceeeccccccCCCCC-CChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCC---CCcccC
Q 045619 303 ICSLSSLEYLSLSHNNLNGTIP-PCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGP---FPRYLA 378 (615)
Q Consensus 303 l~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~---~~~~~~ 378 (615)
+..+++|++|+++.|.++ .++ ..+..+ ..|++|.|+.|.+.. +.+..+.++++|++|++++|.+... ....|.
T Consensus 313 WsftqkL~~LdLs~N~i~-~l~~~sf~~L-~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRIT-RLDEGSFRVL-SQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred hhhcccceeEeccccccc-cCChhHHHHH-HHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 888889999999998888 554 444444 488899999988873 4444445558889999988887632 334678
Q ss_pred CCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhc
Q 045619 379 DCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVS 454 (615)
Q Consensus 379 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 454 (615)
++++|+.|++.||++..+...+|.++++|+.|++.+|.+.+.. ..+|..+ +|+.|-+....+.+.+...++..
T Consensus 390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq--~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ--PNAFEPM-ELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred cchhhhheeecCceeeecchhhhccCcccceecCCCCcceeec--ccccccc-hhhhhhhcccceEEeccHHHHHH
Confidence 8889999999999888888888889999999999988887633 3445666 77777776655555555444443
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=2e-32 Score=279.62 Aligned_cols=481 Identities=27% Similarity=0.310 Sum_probs=310.0
Q ss_pred EecCCCCceeecCCcccccccccccccccccccCCCCCh-hhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCC
Q 045619 28 LDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISP-EFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDC 106 (615)
Q Consensus 28 l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~ 106 (615)
+|.+...++-+ +. .+.+-..+..|+++.+..-..|- .+.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|
T Consensus 3 vd~s~~~l~~i-p~--~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 3 VDASDEQLELI-PE--QILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred cccccccCccc-ch--hhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchh
Confidence 45555555432 22 33344447777777766554553 3444555999999999887 67778899999999999999
Q ss_pred cCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCcc
Q 045619 107 DMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLT 186 (615)
Q Consensus 107 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 186 (615)
.+. ..|....++.+|+++.|..|.. ...|..+..+ .+|+.|+++.|.+. ..|..+..+..++.+..++| ...
T Consensus 79 ~i~----~vp~s~~~~~~l~~lnL~~n~l-~~lP~~~~~l-knl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N-~~~ 150 (1081)
T KOG0618|consen 79 YIR----SVPSSCSNMRNLQYLNLKNNRL-QSLPASISEL-KNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNN-EKI 150 (1081)
T ss_pred hHh----hCchhhhhhhcchhheeccchh-hcCchhHHhh-hcccccccchhccC-CCchhHHhhhHHHHHhhhcc-hhh
Confidence 884 5667778888999988886654 4457777777 88889999888887 57777788888888888887 111
Q ss_pred ccCCCCCCCCCccEEECCCCCcccc-ccCCCCcC-EEecCCcccCcccccccccCCCcCcEEEccCCcccCcCCCCCCCC
Q 045619 187 GYLPESNWSTSLRELDLSFSNFTGF-LRNSEELE-FLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNI 264 (615)
Q Consensus 187 ~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~L~-~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L 264 (615)
..+... .++.+++..+.+... ......++ .+++.+|.+. .+ ....+++|+.+....|++..+.. .-+++
T Consensus 151 ---~~lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls~l~~-~g~~l 221 (1081)
T KOG0618|consen 151 ---QRLGQT-SIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-VL---DLSNLANLEVLHCERNQLSELEI-SGPSL 221 (1081)
T ss_pred ---hhhccc-cchhhhhhhhhcccchhcchhhhheeeecccchhh-hh---hhhhccchhhhhhhhcccceEEe-cCcch
Confidence 122111 266677766655542 33333344 4888887764 22 22556777777777776665543 23467
Q ss_pred cEEEcCCCccccccCCC-CCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCc
Q 045619 265 TVLNLRNNTIQGTILVP-PPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNK 343 (615)
Q Consensus 265 ~~L~l~~~~i~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~ 343 (615)
+.|+.++|.+....... +.++++++++.+.+. .+|+|+..+.+|+.+...+|.+. .+|..++... +|+.|.+..|+
T Consensus 222 ~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~-~L~~l~~~~ne 298 (1081)
T KOG0618|consen 222 TALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRIT-SLVSLSAAYNE 298 (1081)
T ss_pred heeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhh-hHHHHHhhhhh
Confidence 77777777776444443 556777777777776 45577777777777777777775 6666666654 67777777777
Q ss_pred ccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCC-CccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccC
Q 045619 344 LQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCD-ELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLC 422 (615)
Q Consensus 344 i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 422 (615)
+. -+|... .+..+|++|++..|++....+..+.-.. .|+.|+.+.|++.......=...+.|+.|++.+|.++....
T Consensus 299 l~-yip~~l-e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 299 LE-YIPPFL-EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred hh-hCCCcc-cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence 65 233222 2236777777777777633333333332 36666666666643332222245567777777777665333
Q ss_pred CCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccce
Q 045619 423 ESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTT 502 (615)
Q Consensus 423 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 502 (615)
+. +.+.++|+.|++++|.+. .+|...+. .++.|+.
T Consensus 377 p~--l~~~~hLKVLhLsyNrL~-~fpas~~~------------------------------------------kle~Lee 411 (1081)
T KOG0618|consen 377 PV--LVNFKHLKVLHLSYNRLN-SFPASKLR------------------------------------------KLEELEE 411 (1081)
T ss_pred hh--hccccceeeeeecccccc-cCCHHHHh------------------------------------------chHHhHH
Confidence 32 356667777777777665 34433322 3455777
Q ss_pred EeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccc
Q 045619 503 IDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRL 582 (615)
Q Consensus 503 L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i 582 (615)
|++|||+++ .+|.....++.|++|...+|.+. ..| .+..++.|+.+|++.|.++......-..-++|++|+++||..
T Consensus 412 L~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 412 LNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred Hhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 788888887 45677788888888888888887 666 567788888888888887653322211116888888888875
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=2.8e-33 Score=260.11 Aligned_cols=219 Identities=25% Similarity=0.301 Sum_probs=131.6
Q ss_pred cEEEEecCCCCceeecCCcccccccccccccccccccCCCCChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEec
Q 045619 24 NVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDL 103 (615)
Q Consensus 24 ~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L 103 (615)
-+++++++.|.+. .+++ +++.+..++.+..+.++..++|..+..+..++.++.+.|.+. .+|+.+..+..|+.++.
T Consensus 69 ~l~vl~~~~n~l~-~lp~--aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPA--AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred ceeEEEeccchhh-hCCH--HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 4455555555553 2333 555666666666666666666666666666666666666665 55556666666666666
Q ss_pred CCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCccCCCccccCCCCCcEEEcccCC
Q 045619 104 FDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNK 183 (615)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 183 (615)
.+|++. ..|+.+.++.+|..+++.+|.+....+..+. + +.|++|+...|-+. .+|..++.+.+|+-|++..|+
T Consensus 145 ~~N~i~----slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m-~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 145 TNNQIS----SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-M-KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred cccccc----cCchHHHHHHHHHHhhccccchhhCCHHHHH-H-HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcc
Confidence 666663 5555566666666666666666555444444 3 66666666666555 456666666666666666665
Q ss_pred CccccCCCCCCCCCccEEECCCCCccccccCCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCC--CCC
Q 045619 184 YLTGYLPESNWSTSLRELDLSFSNFTGFLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ--HPW 261 (615)
Q Consensus 184 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~ 261 (615)
+.. .+. |.+|..|.++++..|++. .++......++++..||+..|++++++. ..+
T Consensus 218 i~~--lPe--------------------f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clL 274 (565)
T KOG0472|consen 218 IRF--LPE--------------------FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLL 274 (565)
T ss_pred ccc--CCC--------------------CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHh
Confidence 443 334 445555666666666665 5666665666777777777777766665 334
Q ss_pred CCCcEEEcCCCcccc
Q 045619 262 KNITVLNLRNNTIQG 276 (615)
Q Consensus 262 ~~L~~L~l~~~~i~~ 276 (615)
++|+.|++++|.|++
T Consensus 275 rsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 275 RSLERLDLSNNDISS 289 (565)
T ss_pred hhhhhhcccCCcccc
Confidence 556666666666663
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=2e-32 Score=254.45 Aligned_cols=477 Identities=22% Similarity=0.291 Sum_probs=260.3
Q ss_pred hhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhccc
Q 045619 68 FLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLS 147 (615)
Q Consensus 68 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 147 (615)
+..-..++.++++.|.++. +.+.+.++..|.++++.+|++. ..|+.++.+..++.++.+++.+... |..+...
T Consensus 41 wW~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~----~lp~aig~l~~l~~l~vs~n~ls~l-p~~i~s~- 113 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS----QLPAAIGELEALKSLNVSHNKLSEL-PEQIGSL- 113 (565)
T ss_pred hhhhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh----hCCHHHHHHHHHHHhhcccchHhhc-cHHHhhh-
Confidence 3444556666666666653 3334666666666666666553 4455555555555555555544332 3344444
Q ss_pred ccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCccccccCCCCcCEEecCCcc
Q 045619 148 STITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGFLRNSEELEFLDLSNNR 227 (615)
Q Consensus 148 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~ 227 (615)
+.+.+++++.|++. ..+.+++.+-.++.++..+|++... .+++. .+.++..+++.+|.
T Consensus 114 ~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~sl-p~~~~--------------------~~~~l~~l~~~~n~ 171 (565)
T KOG0472|consen 114 ISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSL-PEDMV--------------------NLSKLSKLDLEGNK 171 (565)
T ss_pred hhhhhhhcccccee-ecCchHHHHhhhhhhhccccccccC-chHHH--------------------HHHHHHHhhccccc
Confidence 55555555555554 3444555555555555555543331 12222 22333344444444
Q ss_pred cCcccccccccCCCcCcEEEccCCcccCcCC--CCCCCCcEEEcCCCccccccCCCCCCceEEEccCCcccccCcccccC
Q 045619 228 IHGRISKSDSQGWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSICS 305 (615)
Q Consensus 228 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 305 (615)
+. ..+... -++..|++|+...|.+..+++ +.+.+|+.|++.+|++. ..| .|.+
T Consensus 172 l~-~l~~~~-i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~----------------------~lP-ef~g 226 (565)
T KOG0472|consen 172 LK-ALPENH-IAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR----------------------FLP-EFPG 226 (565)
T ss_pred hh-hCCHHH-HHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc----------------------cCC-CCCc
Confidence 43 223322 114444444444444443333 22222222222222222 333 4566
Q ss_pred CCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccE
Q 045619 306 LSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEV 385 (615)
Q Consensus 306 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 385 (615)
|..|++++++.|.+. .+|.......+++..||+.+|++. ..|..+... .+|++||+++|.|+ ..|..++++ .|+.
T Consensus 227 cs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL-rsL~rLDlSNN~is-~Lp~sLgnl-hL~~ 301 (565)
T KOG0472|consen 227 CSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL-RSLERLDLSNNDIS-SLPYSLGNL-HLKF 301 (565)
T ss_pred cHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHh-hhhhhhcccCCccc-cCCcccccc-eeee
Confidence 666666666666665 555555433346666666666665 455544333 55666666666666 455566666 6666
Q ss_pred EEcCCCcCCccCccccCC-----CCCCcE-EEccCCcccCc------cCCCc---cCCCCCcccEEEccCCcCcCCCchH
Q 045619 386 VNVGNNMIGDTFPSWLGC-----LPGLNI-LVLRSNRFYGP------LCESN---IMFPFQALRIIDLSHNEFTGFLPRW 450 (615)
Q Consensus 386 L~l~~n~i~~~~~~~~~~-----l~~L~~-L~l~~~~~~~~------~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~ 450 (615)
|-+.||++..+..+.+.+ ++.|+. ..-++-..++. ..... ......+.+.|++++-.++ .+|.+
T Consensus 302 L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdE 380 (565)
T KOG0472|consen 302 LALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDE 380 (565)
T ss_pred hhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHH
Confidence 666666543221111110 111111 00000000000 00000 0012335556666666665 44554
Q ss_pred HHhchh--hhcccccCCCCCcccccccccccccee-----EEecCchhhHHhhccccceEeCCCCccCccCCccccCCCC
Q 045619 451 IFVSLE--AMKNVDEKGSDGLYMQREEDYYQDSVT-----VTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKS 523 (615)
Q Consensus 451 ~~~~~~--~L~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~ 523 (615)
+|..-+ -...++.+..+..........+...++ .............++.|+.|++++|-+. ..|..++.+.+
T Consensus 381 Vfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~ 459 (565)
T KOG0472|consen 381 VFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR 459 (565)
T ss_pred HHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhh
Confidence 444332 122333333333333222221111111 1112222334455788999999999888 57888999999
Q ss_pred CcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCCCCCCCccCcccCCC
Q 045619 524 LIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFENDSYIGN 603 (615)
Q Consensus 524 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~ 603 (615)
||+|+++.|++. .+|+++..+.-|+.+-.++|++....++.+.+|..|.+|++++|.+.+.=|..+.+++++.+.++||
T Consensus 460 Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 460 LQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCC
Confidence 999999999998 8999999889999999999999988888899999999999999999865566677999999999998
Q ss_pred cCc
Q 045619 604 IHL 606 (615)
Q Consensus 604 ~~~ 606 (615)
|-.
T Consensus 539 pfr 541 (565)
T KOG0472|consen 539 PFR 541 (565)
T ss_pred ccC
Confidence 865
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=3.8e-31 Score=270.39 Aligned_cols=497 Identities=26% Similarity=0.287 Sum_probs=372.0
Q ss_pred CCcccceeeeC-CCCCcEEEEecCCCCceeecCCcccccccccccccccccccCCCCChhhhcCCCCceeeCCCCccCCC
Q 045619 9 DCCSWDGVTCD-NVTGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGL 87 (615)
Q Consensus 9 ~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~ 87 (615)
-||+.+.+-.. ....++++|++.+|.+... | ..+..+..+|++|+++++.....|..+..+.+|+.|+++.|.+. .
T Consensus 6 s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~-p-l~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~ 82 (1081)
T KOG0618|consen 6 SDEQLELIPEQILNNEALQILNLRRNSLLSR-P-LEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-S 82 (1081)
T ss_pred ccccCcccchhhccHHHHHhhhccccccccC-c-hHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-h
Confidence 34555444332 2345688999999977532 2 33666677799999999999999999999999999999999998 7
Q ss_pred CchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCccCCCcc
Q 045619 88 LPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPRE 167 (615)
Q Consensus 88 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~ 167 (615)
.|.+..++.+|++++|.+|++ ...|..+..+.+|+.|++++|..... |..+..+ ..+..+..++|... ..
T Consensus 83 vp~s~~~~~~l~~lnL~~n~l----~~lP~~~~~lknl~~LdlS~N~f~~~-Pl~i~~l-t~~~~~~~s~N~~~----~~ 152 (1081)
T KOG0618|consen 83 VPSSCSNMRNLQYLNLKNNRL----QSLPASISELKNLQYLDLSFNHFGPI-PLVIEVL-TAEEELAASNNEKI----QR 152 (1081)
T ss_pred Cchhhhhhhcchhheeccchh----hcCchhHHhhhcccccccchhccCCC-chhHHhh-hHHHHHhhhcchhh----hh
Confidence 778899999999999999988 58899999999999999999987665 4455555 77777788887221 12
Q ss_pred ccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCcc-ccccCCCCcCEEecCCcccCcccccccccCCCcCcEE
Q 045619 168 IFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFT-GFLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYL 246 (615)
Q Consensus 168 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 246 (615)
++... ++.+++..+............+.. .+++..|.+. ..+..+.+|+.+....|++. .+. -.-++++.|
T Consensus 153 lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L 224 (1081)
T KOG0618|consen 153 LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTAL 224 (1081)
T ss_pred hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccc-eEE----ecCcchhee
Confidence 22222 667777666443322333332222 5888888877 34777888888888888775 221 234788888
Q ss_pred EccCCcccCcCCC-CCCCCcEEEcCCCccccccCCC---CCCceEEEccCCcccccCcccccCCCccceeeccccccCCC
Q 045619 247 DISNNFLTQIEQH-PWKNITVLNLRNNTIQGTILVP---PPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGT 322 (615)
Q Consensus 247 ~l~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 322 (615)
+.+.|.++..... ...++++++++++.+.... .+ +.+|+.+...+|.++ ..|..+....+|+.|.+..|.+. .
T Consensus 225 ~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-y 301 (1081)
T KOG0618|consen 225 YADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-Y 301 (1081)
T ss_pred eeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-h
Confidence 8888888866553 3458899999999887655 33 889999999999985 67777778899999999999997 8
Q ss_pred CCCChhccccCCcEEEccCCcccccCchhhhcCC-CcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCcccc
Q 045619 323 IPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGS-CSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWL 401 (615)
Q Consensus 323 ~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 401 (615)
+|....... +|+.|+|..|++. .+|..+..-. ..++.|+.+.+.+.......=..++.|+.|.+-+|.+++.....+
T Consensus 302 ip~~le~~~-sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 302 IPPFLEGLK-SLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred CCCcccccc-eeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence 887777664 8999999999998 6666554332 347788888888763321112235789999999999998888889
Q ss_pred CCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccc
Q 045619 402 GCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDS 481 (615)
Q Consensus 402 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~ 481 (615)
.+.++|+.|++++|++.. .+...+.+++.|+.|+++||.+. .+|.. ..
T Consensus 380 ~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSGNkL~-~Lp~t-va---------------------------- 427 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSGNKLT-TLPDT-VA---------------------------- 427 (1081)
T ss_pred ccccceeeeeeccccccc--CCHHHHhchHHhHHHhcccchhh-hhhHH-HH----------------------------
Confidence 999999999999998875 44455688999999999999998 44432 22
Q ss_pred eeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCccc-CCccccCCCCCCEEeCCCCcccc
Q 045619 482 VTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGS-IPVSFANMTALESLDLSSNKLHG 560 (615)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~ 560 (615)
.+..|++|...+|.+. ..| .+.+++.|+.+|++.|.++.. +|.... -++|++||+++|.-..
T Consensus 428 --------------~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 428 --------------NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLV 490 (1081)
T ss_pred --------------hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccc
Confidence 2566888888889887 667 688999999999999998743 343332 2899999999998655
Q ss_pred cchhhhhhcCcCCeEEcccc
Q 045619 561 RILEQLLSVTALASLNLSYN 580 (615)
Q Consensus 561 ~~~~~~~~l~~L~~L~l~~n 580 (615)
...+.|..+.++..+++.-+
T Consensus 491 ~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 491 FDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cchhhhHHhhhhhheecccC
Confidence 66666777777777777766
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.2e-28 Score=241.42 Aligned_cols=364 Identities=25% Similarity=0.328 Sum_probs=214.9
Q ss_pred hcCCCCceeeCCCCccC-CCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhccc
Q 045619 69 LRLKELTYLNLSYTRFS-GLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLS 147 (615)
Q Consensus 69 ~~l~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 147 (615)
+-++-.|-.|+++|.++ +..|.....|.++++|.|...++ ..+|+.++.+.+|++|.+.+|.+.... ..+..+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L----~~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~L- 77 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL----EQVPEELSRLQKLEHLSMAHNQLISVH-GELSDL- 77 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh----hhChHHHHHHhhhhhhhhhhhhhHhhh-hhhccc-
Confidence 34566777888888887 66788888888888888888876 456666777766666666666544332 233444
Q ss_pred ccccEEEcCCCCCcc-CCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCccccccCCCCcCEEecCCc
Q 045619 148 STITVLDLSGTGMRG-NFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGFLRNSEELEFLDLSNN 226 (615)
Q Consensus 148 ~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~ 226 (615)
|.|+.+.+.+|++.. -+|..+..+..|..||+++|+..+ .... +..-+++-.|++++|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~--------------------LE~AKn~iVLNLS~N 136 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTN--------------------LEYAKNSIVLNLSYN 136 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchh--------------------hhhhcCcEEEEcccC
Confidence 666666666666542 245556666666666666664322 1112 223456667778888
Q ss_pred ccCcccccccccCCCcCcEEEccCCcccCcCC--CCCCCCcEEEcCCCccccccCCC---CCCceEEEccCCcc-cccCc
Q 045619 227 RIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLRNNTIQGTILVP---PPSTRAFLFSNNKL-FGQIP 300 (615)
Q Consensus 227 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~---~~~L~~L~l~~~~~-~~~~~ 300 (615)
+|. .+|...|.++..|-.|+|++|++..+++ ..+..|++|.+++|.+....... +.+|.+|.+++.+- ...+|
T Consensus 137 ~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 137 NIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred ccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC
Confidence 886 7888888888888888888888888777 45667777777777655332222 22333334443322 12344
Q ss_pred ccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCC
Q 045619 301 PSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADC 380 (615)
Q Consensus 301 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l 380 (615)
..+..+.+|..++++.|.+. .+|+++..+. +|+.|+|++|+|+ .+.. ....-
T Consensus 216 tsld~l~NL~dvDlS~N~Lp-~vPecly~l~-~LrrLNLS~N~it-eL~~-------------------------~~~~W 267 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLP-IVPECLYKLR-NLRRLNLSGNKIT-ELNM-------------------------TEGEW 267 (1255)
T ss_pred CchhhhhhhhhccccccCCC-cchHHHhhhh-hhheeccCcCcee-eeec-------------------------cHHHH
Confidence 44455555555555555544 4455544443 4555555554443 1111 11122
Q ss_pred CCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcc
Q 045619 381 DELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKN 460 (615)
Q Consensus 381 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~ 460 (615)
.+|+.|+++.|++ ...|.+++.++.|++|.+.+|++.-.-.+.. .+.
T Consensus 268 ~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSG-IGK------------------------------- 314 (1255)
T KOG0444|consen 268 ENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSG-IGK------------------------------- 314 (1255)
T ss_pred hhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccc-hhh-------------------------------
Confidence 3444444444444 2344444555555555554444332111110 011
Q ss_pred cccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCc
Q 045619 461 VDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPV 540 (615)
Q Consensus 461 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 540 (615)
+..|+.+...+|.+. .+|+++..|..|+.|.|++|++- .+|+
T Consensus 315 ------------------------------------L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPe 356 (1255)
T KOG0444|consen 315 ------------------------------------LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPE 356 (1255)
T ss_pred ------------------------------------hhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echh
Confidence 223444555555554 67888888888888888888876 6888
Q ss_pred cccCCCCCCEEeCCCCccc
Q 045619 541 SFANMTALESLDLSSNKLH 559 (615)
Q Consensus 541 ~~~~l~~L~~L~l~~n~~~ 559 (615)
++.-++-|+.||+..|.-.
T Consensus 357 aIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhcCCcceeeccCCcCc
Confidence 8888888888888888654
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2.9e-27 Score=231.73 Aligned_cols=358 Identities=24% Similarity=0.329 Sum_probs=271.4
Q ss_pred CcEEEEecCCCCceeecCCcccccccccccccccccccCCCCChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEe
Q 045619 23 GNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLD 102 (615)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 102 (615)
+-||-+|+++|.+.|.-++ .....+.+++-|.++..+...+|+.++.+.+|+.|.+..|.+... -..++.++.||.++
T Consensus 7 pFVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHh
Confidence 5678889999988864443 144557778888899988888999999999999999999988733 34578889999999
Q ss_pred cCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCccCCCccccCCCCCcEEEcccC
Q 045619 103 LFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSN 182 (615)
Q Consensus 103 L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 182 (615)
+..|++. ...+|..+.++..|.+|||++|.+... |..+... +++-.|++++|+|..+.-..+.++..|-.||+++|
T Consensus 85 ~R~N~LK--nsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~A-Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 85 VRDNNLK--NSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYA-KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred hhccccc--cCCCCchhcccccceeeecchhhhhhc-chhhhhh-cCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 9988764 256888889999999999999887654 5566665 88889999999988433344567899999999998
Q ss_pred CCccccCCCCCCCCCccEEECCCCCcccc----ccCCCCcCEEecCCcccC-cccccccccCCCcCcEEEccCCcccCcC
Q 045619 183 KYLTGYLPESNWSTSLRELDLSFSNFTGF----LRNSEELEFLDLSNNRIH-GRISKSDSQGWKSLTYLDISNNFLTQIE 257 (615)
Q Consensus 183 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 257 (615)
+ .....+....+..|++|.+++|++.-+ +.+++.|+.|.+++.+-+ ..+|.+. ..+.+|..++++.|.+..++
T Consensus 161 r-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N~Lp~vP 238 (1255)
T KOG0444|consen 161 R-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSENNLPIVP 238 (1255)
T ss_pred h-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch-hhhhhhhhccccccCCCcch
Confidence 4 444555666778899999999987653 667788888888887643 2344444 77888999999999888877
Q ss_pred C--CCCCCCcEEEcCCCccccccCCC--CCCceEEEccCCcccccCcccccCCCccceeeccccccCC-CCCCChhcccc
Q 045619 258 Q--HPWKNITVLNLRNNTIQGTILVP--PPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNG-TIPPCLGNFST 332 (615)
Q Consensus 258 ~--~~~~~L~~L~l~~~~i~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~ 332 (615)
. ..+++|+.|++++|+|+...... ..++++|+++.|+++ ..|+.++++++|+.|+..+|+++- -+|..++.+.
T Consensus 239 ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~- 316 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI- 316 (1255)
T ss_pred HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh-
Confidence 6 34568889999998887544332 667788888888777 677888888888888888887662 3577777765
Q ss_pred CCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcC
Q 045619 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMI 393 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i 393 (615)
+|+.+...+|.+. ..|..+..+ .+|+.|.++.|.+. .+|+++.-++.|++||+..|+-
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC-~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRC-VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhh-HHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 7777777777775 666666544 67888888887776 5777777778888888877754
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3.6e-21 Score=220.28 Aligned_cols=367 Identities=19% Similarity=0.217 Sum_probs=253.8
Q ss_pred CCCcEEEEecCCCCceeecCCccccccccccccccccccc-------CCCCChhhhcCC-CCceeeCCCCccCCCCchhh
Q 045619 21 VTGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFN-------GSQISPEFLRLK-ELTYLNLSYTRFSGLLPQEI 92 (615)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~-------~~~l~~~l~~l~-~L~~L~L~~~~~~~~~~~~l 92 (615)
.+..++.+.+....+........++..+++|+.|.+.... ...+|+.|..++ +|+.|++.++.+. .+|..|
T Consensus 530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f 608 (1153)
T PLN03210 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF 608 (1153)
T ss_pred ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC
Confidence 3456777776655554333344578889999998775432 124777787775 5999999999887 667667
Q ss_pred hcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCccCCCccccCCC
Q 045619 93 SHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLP 172 (615)
Q Consensus 93 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~ 172 (615)
...+|++|++.++.+. .++..+..+++|+.|+++++......| .+..+ ++|++|++.+|......|..+..++
T Consensus 609 -~~~~L~~L~L~~s~l~----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l-~~Le~L~L~~c~~L~~lp~si~~L~ 681 (1153)
T PLN03210 609 -RPENLVKLQMQGSKLE----KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMA-TNLETLKLSDCSSLVELPSSIQYLN 681 (1153)
T ss_pred -CccCCcEEECcCcccc----ccccccccCCCCCEEECCCCCCcCcCC-ccccC-CcccEEEecCCCCccccchhhhccC
Confidence 5689999999999874 567777899999999999876544444 35555 9999999999886667888999999
Q ss_pred CCcEEEcccCCCccccCCCCCCCCCccEEECCCCCccc-cccCCCCcCEEecCCcccCcccccccccCCCcCcEEEccCC
Q 045619 173 HLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTG-FLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNN 251 (615)
Q Consensus 173 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 251 (615)
+|+.|++++|.... .++....+++|+.|++++|.... +....++|++|+++++.+. .+|... .+++|++|.+.++
T Consensus 682 ~L~~L~L~~c~~L~-~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~ 757 (1153)
T PLN03210 682 KLEDLDMSRCENLE-ILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEM 757 (1153)
T ss_pred CCCEEeCCCCCCcC-ccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccc--ccccccccccccc
Confidence 99999999985433 34443356777777777764322 2223456666666666654 343322 3455555555443
Q ss_pred cccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccc
Q 045619 252 FLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFS 331 (615)
Q Consensus 252 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 331 (615)
....+... . ..+.......+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ .+
T Consensus 758 ~~~~l~~~-~----------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L- 824 (1153)
T PLN03210 758 KSEKLWER-V----------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NL- 824 (1153)
T ss_pred chhhcccc-c----------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc-
Confidence 22111000 0 00111112225788888888887777788888899999999999885444777665 33
Q ss_pred cCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEE
Q 045619 332 TQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILV 411 (615)
Q Consensus 332 ~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 411 (615)
++|+.|++++|.....+|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|.-...+|..+..+++|+.++
T Consensus 825 ~sL~~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 825 ESLESLDLSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred cccCEEECCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 48999999988655444432 268889999999887 5677888889999999998755455666677888888888
Q ss_pred ccCCcc
Q 045619 412 LRSNRF 417 (615)
Q Consensus 412 l~~~~~ 417 (615)
+++|.-
T Consensus 900 l~~C~~ 905 (1153)
T PLN03210 900 FSDCGA 905 (1153)
T ss_pred cCCCcc
Confidence 888853
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=1.6e-19 Score=206.76 Aligned_cols=59 Identities=20% Similarity=0.398 Sum_probs=30.5
Q ss_pred cccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCc
Q 045619 498 TILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNK 557 (615)
Q Consensus 498 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 557 (615)
++|+.|++++|.+. .+|..+..+++|+.|+|++|+-...+|..+..+++|+.+++++|.
T Consensus 846 ~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 846 TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 34555555555554 345555555555555555543322444445555555555555553
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=9.4e-23 Score=190.08 Aligned_cols=414 Identities=20% Similarity=0.132 Sum_probs=212.8
Q ss_pred ccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCC-CCccc----cccCCCCcCEEe
Q 045619 148 STITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSF-SNFTG----FLRNSEELEFLD 222 (615)
Q Consensus 148 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~----~~~~~~~L~~L~ 222 (615)
+.-..++|..|.|+...+.+|+.+++|+.||+++|.+......++..++++..|-+.+ |.|++ .++++..++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5566666777777655666666777777777777766666666666666666555544 56654 366677777777
Q ss_pred cCCcccCcccccccccCCCcCcEEEccCCcccCcCCCCCC---CCcEEEcCCCccccccCCCCCCceEEEccCCcccccC
Q 045619 223 LSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWK---NITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQI 299 (615)
Q Consensus 223 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~ 299 (615)
+.-|++. .+....+..++++..|.+..|.+..+....+. .++.+.+..|.+..+-. ++.+..... ..
T Consensus 147 lNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn--L~wla~~~a-------~~ 216 (498)
T KOG4237|consen 147 LNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN--LPWLADDLA-------MN 216 (498)
T ss_pred cChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc--cchhhhHHh-------hc
Confidence 7777776 56666667777777777777777666554433 44455555544221000 000000000 11
Q ss_pred cccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCC
Q 045619 300 PPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLAD 379 (615)
Q Consensus 300 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 379 (615)
+..++.+.......+...++...-+..+......+..--.+.+...+..|..-+..+++|++|++++|+++.+-+.+|.+
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 11222222222233333333311111111110111111122333333455544455566666666666666666666666
Q ss_pred CCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhc
Q 045619 380 CDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMK 459 (615)
Q Consensus 380 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~ 459 (615)
+..+++|.|..|++......+|.++..|+.|++++|+|+...+ .+|....+|..|.+-.|++....-..++..+-+-+
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~--~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~ 374 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP--GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK 374 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec--ccccccceeeeeehccCcccCccchHHHHHHHhhC
Confidence 6666666666666655555666666666666666666665333 23355566666666666666555555555543333
Q ss_pred c-cccCCCCCccccccccc---cccceeEEecC----chhhH-HhhccccceEe-CCCCccCccCCccccCCCCCcEEeC
Q 045619 460 N-VDEKGSDGLYMQREEDY---YQDSVTVTVKG----RDVVL-KRIITILTTID-LSSNQFQAEIPRVLGDFKSLIVLNL 529 (615)
Q Consensus 460 ~-l~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~-~~~~~~L~~L~-l~~~~i~~~~~~~l~~l~~L~~L~L 529 (615)
. ....-|+........+. ..+.......+ .++.. ...++.+.+.. .++..+. .+|..+. ..-.+|++
T Consensus 375 ~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl 451 (498)
T KOG4237|consen 375 SVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYL 451 (498)
T ss_pred CCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhc
Confidence 3 11111111000000000 00000000000 00000 01133333322 2222232 4444333 35667888
Q ss_pred cCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccc
Q 045619 530 SHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYN 580 (615)
Q Consensus 530 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 580 (615)
.+|.++ .+|.. .+.+| .+|+++|++.-..-..|.++++|.+|.|++|
T Consensus 452 ~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 452 DGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 888887 56655 56677 8888888887666667788888888888765
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=2.1e-21 Score=181.08 Aligned_cols=286 Identities=22% Similarity=0.210 Sum_probs=171.4
Q ss_pred CCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccC-CcccccCchhhhcCCCccc
Q 045619 282 PPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNN-NKLQGRIPDAFANGSCSLR 360 (615)
Q Consensus 282 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~-~~i~~~~~~~~~~~~~~L~ 360 (615)
++.-+.+++..|+|....+.+|..+++|+.|++++|.|....|..+..+. ++..|.+.+ |+|. .+|...+.++.+++
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~-~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKIT-DLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence 66777778888888777777888888888888888888755566666654 565555555 7777 55665555667777
Q ss_pred EEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCC----------ccCCCC
Q 045619 361 SLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCES----------NIMFPF 430 (615)
Q Consensus 361 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----------~~~~~~ 430 (615)
.|.+.-|++..+..+.|..+++|..|.+.+|.+..+....|..+.+++.+.+..|++...-... ..++..
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 7777777777677777888888888888888775555557777777777777776632100000 000111
Q ss_pred CcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCcc
Q 045619 431 QALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQF 510 (615)
Q Consensus 431 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 510 (615)
.......+....+...-+..+. +...++..-..+.+..
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~------------------------------------------c~~esl~s~~~~~d~~ 261 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFL------------------------------------------CSLESLPSRLSSEDFP 261 (498)
T ss_pred eecchHHHHHHHhcccchhhhh------------------------------------------hhHHhHHHhhccccCc
Confidence 1111111111111111111100 0011111111122222
Q ss_pred Ccc-CCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCC
Q 045619 511 QAE-IPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRG 589 (615)
Q Consensus 511 ~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~ 589 (615)
... ....|..+++|+.|+|++|+|+..-+.+|.....++.|.|..|++....-.+|+++..|+.|++.+|+|+..-|.-
T Consensus 262 d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 262 DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred CCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence 212 2245667777777777777777666666777777777777777776666666777777777777777777666666
Q ss_pred CC-CCCccCcccCCCcCccCCCC
Q 045619 590 NQ-FNTFENDSYIGNIHLCGEPL 611 (615)
Q Consensus 590 ~~-~~~~~~~~~~~~~~~~~~~~ 611 (615)
++ +.++.+|.+++||+-|++.+
T Consensus 342 F~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred ccccceeeeeehccCcccCccch
Confidence 55 66666777777777777654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=1.1e-18 Score=185.50 Aligned_cols=268 Identities=23% Similarity=0.312 Sum_probs=167.1
Q ss_pred CCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCCcc
Q 045619 216 EELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKL 295 (615)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~ 295 (615)
.+-..|+++++.++ .+|..+. ++++.|++.+|+++.++. .+++|++|++++|.++.. +..+++|+.|++.+|.+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~-lp~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPL 274 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC-CCCCCcEEEecCCccCcc-cCcccccceeeccCCch
Confidence 34567788888776 5666442 467888888888887654 356788888888877754 33456777777777776
Q ss_pred cccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCc
Q 045619 296 FGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPR 375 (615)
Q Consensus 296 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 375 (615)
.. +|.. ...|+.|++++|.+. .+|.. +++|+.|++++|.+. .+|.. ..+|+.|++++|.++. +|.
T Consensus 275 ~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~-LP~ 339 (788)
T PRK15387 275 TH-LPAL---PSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS-LPT 339 (788)
T ss_pred hh-hhhc---hhhcCEEECcCCccc-ccccc----ccccceeECCCCccc-cCCCC----cccccccccccCcccc-ccc
Confidence 53 3322 355667777777776 55542 246777777777766 33331 1456677777777663 332
Q ss_pred ccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhch
Q 045619 376 YLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSL 455 (615)
Q Consensus 376 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 455 (615)
. ..+|++|++++|+++.. |.. .++|+.|++++|.+... +. ...+|+.|++++|.+.+ +|..
T Consensus 340 l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~L-P~-----l~~~L~~LdLs~N~Lt~-LP~l----- 400 (788)
T PRK15387 340 L---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTSL-PA-----LPSGLKELIVSGNRLTS-LPVL----- 400 (788)
T ss_pred c---ccccceEecCCCccCCC-CCC---CcccceehhhccccccC-cc-----cccccceEEecCCcccC-CCCc-----
Confidence 1 24677777777777543 321 24566677777766541 11 12456777777776652 2210
Q ss_pred hhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCc
Q 045619 456 EAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLT 535 (615)
Q Consensus 456 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~ 535 (615)
.++|+.|++++|++.. +|.. ..+|+.|++++|.++
T Consensus 401 -----------------------------------------~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt 435 (788)
T PRK15387 401 -----------------------------------------PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT 435 (788)
T ss_pred -----------------------------------------ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc
Confidence 2347777777777764 4432 245677777777777
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccchhhhhhc
Q 045619 536 GSIPVSFANMTALESLDLSSNKLHGRILEQLLSV 569 (615)
Q Consensus 536 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 569 (615)
.+|..+..+++|+.|+|++|++++..+..+..+
T Consensus 436 -~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 436 -RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred -ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 677777777777777777777777666665443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=1.8e-18 Score=183.85 Aligned_cols=263 Identities=26% Similarity=0.318 Sum_probs=179.1
Q ss_pred CcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCCcccccCcccccCCCccceeeccccccC
Q 045619 241 KSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLN 320 (615)
Q Consensus 241 ~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 320 (615)
..-..|+++++.++.++....++++.|++.+|.++.. +..+++|++|++++|.+.. +|.. .++|+.|++++|.+.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~L-P~lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSL-PALPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCC-CCCCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh
Confidence 3355778888888877765566788888888887753 3446788888888887774 3432 467888888888776
Q ss_pred CCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccc
Q 045619 321 GTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSW 400 (615)
Q Consensus 321 ~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 400 (615)
.+|.. +++|+.|++++|.+. .+|.. .++|+.|++++|.++. +|.. ...|+.|++++|.++. +|.
T Consensus 276 -~Lp~l----p~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~- 339 (788)
T PRK15387 276 -HLPAL----PSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT- 339 (788)
T ss_pred -hhhhc----hhhcCEEECcCCccc-ccccc----ccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc-
Confidence 55542 246788888888776 44432 2678888888888774 3332 2457778888888754 332
Q ss_pred cCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCcccccccccccc
Q 045619 401 LGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQD 480 (615)
Q Consensus 401 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 480 (615)
...+|+.|++++|++..... ...+|+.|++++|.+.. +|..
T Consensus 340 --lp~~Lq~LdLS~N~Ls~LP~------lp~~L~~L~Ls~N~L~~-LP~l------------------------------ 380 (788)
T PRK15387 340 --LPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLTS-LPAL------------------------------ 380 (788)
T ss_pred --cccccceEecCCCccCCCCC------CCcccceehhhcccccc-Cccc------------------------------
Confidence 12468888888888765221 13467777777777662 3310
Q ss_pred ceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 045619 481 SVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHG 560 (615)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 560 (615)
+.+|+.|++++|+++. +|.. .++|++|++++|+++ .+|.. ..+|+.|++++|+++
T Consensus 381 ----------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt- 435 (788)
T PRK15387 381 ----------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT- 435 (788)
T ss_pred ----------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-
Confidence 2347788888888874 4432 357888888888887 46643 346778888888887
Q ss_pred cchhhhhhcCcCCeEEcccccceecCCC
Q 045619 561 RILEQLLSVTALASLNLSYNRLWGRIPR 588 (615)
Q Consensus 561 ~~~~~~~~l~~L~~L~l~~n~i~~~~p~ 588 (615)
.+|..+.++++|+.|++++|++.+..|.
T Consensus 436 ~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 436 RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 5677788888888888888888776544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=1e-16 Score=171.75 Aligned_cols=244 Identities=26% Similarity=0.346 Sum_probs=123.0
Q ss_pred cEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCCcccccCcccccCCCccceeeccccccCCCC
Q 045619 244 TYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTI 323 (615)
Q Consensus 244 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 323 (615)
..|++++++++.++..-.+.++.|++++|.++.......++|++|++++|.+. .+|..+ .+.|+.|++++|.+. .+
T Consensus 181 ~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N~L~-~L 256 (754)
T PRK15370 181 TELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATL--PDTIQEMELSINRIT-EL 256 (754)
T ss_pred eEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhh--hccccEEECcCCccC-cC
Confidence 34444444444443322334444444444444222212234444444444433 233322 235666777777665 55
Q ss_pred CCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCC
Q 045619 324 PPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGC 403 (615)
Q Consensus 324 ~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 403 (615)
|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.++.. |..+
T Consensus 257 P~~l~---s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l-- 323 (754)
T PRK15370 257 PERLP---SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-PETL-- 323 (754)
T ss_pred ChhHh---CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-Cccc--
Confidence 55442 35667777766665 3444332 466666776666653 333221 3566666666666432 2222
Q ss_pred CCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCcccccccccccccee
Q 045619 404 LPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVT 483 (615)
Q Consensus 404 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 483 (615)
.++|+.|++++|.+... +. .-.++|+.|++++|.+. .+|..+
T Consensus 324 ~~sL~~L~Ls~N~Lt~L-P~----~l~~sL~~L~Ls~N~L~-~LP~~l-------------------------------- 365 (754)
T PRK15370 324 PPGLKTLEAGENALTSL-PA----SLPPELQVLDVSKNQIT-VLPETL-------------------------------- 365 (754)
T ss_pred cccceeccccCCccccC-Ch----hhcCcccEEECCCCCCC-cCChhh--------------------------------
Confidence 24566666666655431 11 11245666666666554 223211
Q ss_pred EEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccc----cCCCCCCEEeCCCCccc
Q 045619 484 VTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSF----ANMTALESLDLSSNKLH 559 (615)
Q Consensus 484 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n~~~ 559 (615)
.+.|+.|++++|+++. +|..+. ++|+.|++++|+++ .+|+.+ ..++++..|++.+|.+.
T Consensus 366 -------------p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 366 -------------PPTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -------------cCCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 2346677777777663 344333 35667777777766 444433 33466677777777665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=1e-16 Score=171.61 Aligned_cols=245 Identities=24% Similarity=0.339 Sum_probs=155.5
Q ss_pred cCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCCcccc
Q 045619 218 LEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFG 297 (615)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~ 297 (615)
...|+++++.++ .+|..+ .++++.|++++|+++.++...+++|+.|++++|.+.......+++|+.|++++|.+.
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~- 254 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT- 254 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhhccccEEECcCCccC-
Confidence 445555555554 344322 135666666666666665544556666666666665433223456777777777766
Q ss_pred cCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCccc
Q 045619 298 QIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYL 377 (615)
Q Consensus 298 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 377 (615)
.+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.++. +|..+
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l 323 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL 323 (754)
T ss_pred cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCccc
Confidence 4455443 47888888888887 6676543 37888888888877 4454332 478888888888873 44333
Q ss_pred CCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhh
Q 045619 378 ADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEA 457 (615)
Q Consensus 378 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 457 (615)
.++|+.|++++|.++. +|..+. ++|+.|++++|++.. .+. ...++|+.|++++|.+. .+|..+
T Consensus 324 --~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~----~lp~~L~~LdLs~N~Lt-~LP~~l------ 386 (754)
T PRK15370 324 --PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPE----TLPPTITTLDVSRNALT-NLPENL------ 386 (754)
T ss_pred --cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CCh----hhcCCcCEEECCCCcCC-CCCHhH------
Confidence 3678888888888865 444443 688889999888764 221 11368889999999887 344332
Q ss_pred hcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccc----cCCCCCcEEeCcCCc
Q 045619 458 MKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVL----GDFKSLIVLNLSHNG 533 (615)
Q Consensus 458 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l----~~l~~L~~L~L~~n~ 533 (615)
...|+.|++++|++. .+|..+ ..++.+..|++.+|.
T Consensus 387 ---------------------------------------~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 387 ---------------------------------------PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ---------------------------------------HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 123666777777776 334333 344777788888887
Q ss_pred Cc
Q 045619 534 LT 535 (615)
Q Consensus 534 l~ 535 (615)
++
T Consensus 427 ls 428 (754)
T PRK15370 427 FS 428 (754)
T ss_pred cc
Confidence 76
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=1.8e-17 Score=165.33 Aligned_cols=84 Identities=29% Similarity=0.348 Sum_probs=37.6
Q ss_pred cccceEeCCCCccCccCCcccc-----CCCCCcEEeCcCCcCcc----cCCccccCCCCCCEEeCCCCccccc----chh
Q 045619 498 TILTTIDLSSNQFQAEIPRVLG-----DFKSLIVLNLSHNGLTG----SIPVSFANMTALESLDLSSNKLHGR----ILE 564 (615)
Q Consensus 498 ~~L~~L~l~~~~i~~~~~~~l~-----~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~ 564 (615)
++|++|++++|++++.....+. ..+.|++|++++|.+++ .+...+..+++|+++++++|.+... ...
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 4455555555555432111111 12455555555555541 1223334445555555555555533 222
Q ss_pred hhhhc-CcCCeEEccccc
Q 045619 565 QLLSV-TALASLNLSYNR 581 (615)
Q Consensus 565 ~~~~l-~~L~~L~l~~n~ 581 (615)
++... +.|+++++.+|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 301 SLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHhhcCCchhhcccCCCC
Confidence 22222 455555555554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=1.9e-17 Score=165.12 Aligned_cols=262 Identities=27% Similarity=0.316 Sum_probs=156.9
Q ss_pred cccCCCccceeeccccccCCC----CCCChhccccCCcEEEccCCcccc------cCchhhhcCCCcccEEEcCCCcccC
Q 045619 302 SICSLSSLEYLSLSHNNLNGT----IPPCLGNFSTQLTILHLNNNKLQG------RIPDAFANGSCSLRSLDLNSNKLEG 371 (615)
Q Consensus 302 ~l~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~~L~~L~L~~~~i~~------~~~~~~~~~~~~L~~L~l~~~~i~~ 371 (615)
.+..+..|+.++++++.+.+. ++..+... +.+++++++++.+.+ ..+..+.. +++|++|++++|.+..
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~-~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQ-PSLKELCLSLNETGRIPRGLQSLLQGLTK-GCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhC-CCceEEeccccccCCcchHHHHHHHHHHh-cCceeEEEccCCCCCh
Confidence 344455566666666665321 12222222 246666666665541 11122322 3677777777777664
Q ss_pred CCCcccCCCC---CccEEEcCCCcCCcc----CccccCCC-CCCcEEEccCCcccCccC--CCccCCCCCcccEEEccCC
Q 045619 372 PFPRYLADCD---ELEVVNVGNNMIGDT----FPSWLGCL-PGLNILVLRSNRFYGPLC--ESNIMFPFQALRIIDLSHN 441 (615)
Q Consensus 372 ~~~~~~~~l~---~L~~L~l~~n~i~~~----~~~~~~~l-~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 441 (615)
..+..+..+. +|++|++++|.+++. ....+..+ ++|+.|++++|.+..... ....+..+++|+.|++++|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 4444443333 377778877777532 22234455 777788888777663211 1122345567888888887
Q ss_pred cCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCcc----CCcc
Q 045619 442 EFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAE----IPRV 517 (615)
Q Consensus 442 ~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~----~~~~ 517 (615)
.+.+.....+...+ ...++|+.|++++|.+.+. ....
T Consensus 176 ~l~~~~~~~l~~~l---------------------------------------~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 176 GIGDAGIRALAEGL---------------------------------------KANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCchHHHHHHHHHH---------------------------------------HhCCCCCEEeccCCccChHHHHHHHHH
Confidence 77642221111111 1235799999999998743 3345
Q ss_pred ccCCCCCcEEeCcCCcCcccCCcccc-----CCCCCCEEeCCCCcccc----cchhhhhhcCcCCeEEcccccceec---
Q 045619 518 LGDFKSLIVLNLSHNGLTGSIPVSFA-----NMTALESLDLSSNKLHG----RILEQLLSVTALASLNLSYNRLWGR--- 585 (615)
Q Consensus 518 l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~--- 585 (615)
+..+++|++|++++|.+++.....+. ..+.|++|++++|.++. .+...+..++.|+++++++|++.+.
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 67889999999999999853332222 24799999999999873 3344556678999999999999854
Q ss_pred -CCCC-CCC-CCccCcccCCCc
Q 045619 586 -IPRG-NQF-NTFENDSYIGNI 604 (615)
Q Consensus 586 -~p~~-~~~-~~~~~~~~~~~~ 604 (615)
+... -.+ +.++++.+..||
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCC
Confidence 3221 122 466666666655
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=4.7e-16 Score=128.91 Aligned_cols=181 Identities=28% Similarity=0.476 Sum_probs=113.5
Q ss_pred CCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEc
Q 045619 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVL 412 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 412 (615)
.++.|.+++|+++ ..|..++.. .+|+.|++++|+++ ..|..++.++.|+.|++.-|++ ...|..|+.+|.|+.|++
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l-~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAEL-KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHh-hhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccCCCchhhhhhc
Confidence 4555555555555 444444443 45555555555555 4455555555555555555555 445555555555555555
Q ss_pred cCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhh
Q 045619 413 RSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVV 492 (615)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (615)
..|.+.+ ..+|+.+|.
T Consensus 110 tynnl~e-------------------------~~lpgnff~--------------------------------------- 125 (264)
T KOG0617|consen 110 TYNNLNE-------------------------NSLPGNFFY--------------------------------------- 125 (264)
T ss_pred ccccccc-------------------------ccCCcchhH---------------------------------------
Confidence 5444322 223333221
Q ss_pred HHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhc---
Q 045619 493 LKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSV--- 569 (615)
Q Consensus 493 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l--- 569 (615)
++.|+.|++++|.+. .+|...+++++|+.|.+.+|.+. .+|..++.++.|+.|+|.+|+++. +|..++.+
T Consensus 126 ----m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v-lppel~~l~l~ 198 (264)
T KOG0617|consen 126 ----MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV-LPPELANLDLV 198 (264)
T ss_pred ----HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee-cChhhhhhhhh
Confidence 345777888888887 77888889999999999998887 788888888999999999998884 44445553
Q ss_pred CcCCeEEcccccceecCCC
Q 045619 570 TALASLNLSYNRLWGRIPR 588 (615)
Q Consensus 570 ~~L~~L~l~~n~i~~~~p~ 588 (615)
.+=+.+.+..||+...|-+
T Consensus 199 ~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 199 GNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred hhHHHHhhhhCCCCChHHH
Confidence 3445666778888755533
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=3.7e-15 Score=123.62 Aligned_cols=138 Identities=25% Similarity=0.352 Sum_probs=118.4
Q ss_pred CcccccccccccccccccccCCCCChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhcc
Q 045619 41 DNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLAS 120 (615)
Q Consensus 41 ~~~~~~~~~~L~~L~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 120 (615)
+.+.+++..+...|-+++++.+.+|..+..+++|++|++++|.++ .+|..++.+++|++|+++-|.+ ...|..|+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl----~~lprgfg 99 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL----NILPRGFG 99 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh----hcCccccC
Confidence 344666777788888888888888999999999999999999998 8888999999999999999887 47788999
Q ss_pred CCCCCCEEecccccCCCCC-chhhhcccccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCc
Q 045619 121 NLTKLSVLNLGWADRSLIE-PFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYL 185 (615)
Q Consensus 121 ~l~~L~~L~l~~~~~~~~~-~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 185 (615)
.++.|++||+.+|.+.... |..|+.+ ..|+.|++++|.+. ..|..++++++|+.|.+..|...
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m-~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHH-HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence 9999999999998876654 4555655 89999999999988 78899999999999999988544
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=6.7e-12 Score=119.90 Aligned_cols=210 Identities=21% Similarity=0.294 Sum_probs=133.0
Q ss_pred CcccEEEcCCCcccCCCC-cccCCCCCccEEEcCCCcCCcc--CccccCCCCCCcEEEccCCcccCccCCCccCCCCCcc
Q 045619 357 CSLRSLDLNSNKLEGPFP-RYLADCDELEVVNVGNNMIGDT--FPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQAL 433 (615)
Q Consensus 357 ~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 433 (615)
.+|+++.+.++.+..... .....|++++.|||+.|-+... ......++|+|+.|+++.|++........ ...+++|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhhhhhh
Confidence 455555565555442211 2344556666666666644322 11233466666666666666544222221 1345677
Q ss_pred cEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCcc
Q 045619 434 RIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAE 513 (615)
Q Consensus 434 ~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 513 (615)
+.|.++.|.++..-..++...+|+|+.+.+.++.+..... .....+..|++|||++|++.+.
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~------------------~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA------------------TSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec------------------chhhhhhHHhhccccCCccccc
Confidence 7777777777766666677777777777766653222211 1123467799999999998753
Q ss_pred CC-ccccCCCCCcEEeCcCCcCccc-CCcc-----ccCCCCCCEEeCCCCcccc-cchhhhhhcCcCCeEEcccccceec
Q 045619 514 IP-RVLGDFKSLIVLNLSHNGLTGS-IPVS-----FANMTALESLDLSSNKLHG-RILEQLLSVTALASLNLSYNRLWGR 585 (615)
Q Consensus 514 ~~-~~l~~l~~L~~L~L~~n~l~~~-~~~~-----~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~ 585 (615)
.. -..+.++.|+.|+++.|++.+. .|++ ...+++|++|++.+|++.. .....+..+++|+.|.+..|++...
T Consensus 262 ~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 262 DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 21 3468899999999999999854 2444 4668999999999999954 2334556678899999999998643
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.2e-12 Score=121.23 Aligned_cols=187 Identities=25% Similarity=0.248 Sum_probs=116.7
Q ss_pred hcCCCCceeeCCCCccCCCCc-hhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhccc
Q 045619 69 LRLKELTYLNLSYTRFSGLLP-QEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLS 147 (615)
Q Consensus 69 ~~l~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 147 (615)
+++++||.+.|.++.+..... .....|++++.|+|++|-+..+ ..+......+|+|+.|+++.|.+............
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw-~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW-FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH-HHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 457778888888887762221 3566788888888888866533 23345556788888888888766554444333344
Q ss_pred ccccEEEcCCCCCccC-CCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCcccc-----ccCCCCcCEE
Q 045619 148 STITVLDLSGTGMRGN-FPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGF-----LRNSEELEFL 221 (615)
Q Consensus 148 ~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~L~~L 221 (615)
+.|+.|.+++|++... +...+..+|+|+.|++..|...............|++|++++|++.++ .+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7888888888887632 223345678888888888843332233334456777777777766543 5566777777
Q ss_pred ecCCcccCcccccccc------cCCCcCcEEEccCCcccCcC
Q 045619 222 DLSNNRIHGRISKSDS------QGWKSLTYLDISNNFLTQIE 257 (615)
Q Consensus 222 ~l~~~~~~~~~~~~~~------~~l~~L~~L~l~~~~~~~~~ 257 (615)
+++.+.+.. +..... ..+++|++|++..|++.++.
T Consensus 277 nls~tgi~s-i~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 277 NLSSTGIAS-IAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred hccccCcch-hcCCCccchhhhcccccceeeecccCcccccc
Confidence 777776652 211111 33456666666666554443
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.10 E-value=1.3e-10 Score=124.55 Aligned_cols=112 Identities=35% Similarity=0.532 Sum_probs=103.4
Q ss_pred ccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcc
Q 045619 499 ILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLS 578 (615)
Q Consensus 499 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 578 (615)
.++.|++++|.+.+..|..++.+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++.+.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceecCCCCCC--CCCccCcccCCCcCccCCC
Q 045619 579 YNRLWGRIPRGNQ--FNTFENDSYIGNIHLCGEP 610 (615)
Q Consensus 579 ~n~i~~~~p~~~~--~~~~~~~~~~~~~~~~~~~ 610 (615)
+|++.+.+|.... +..+..+.+.||+.+|+.|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999998543 3456678899999999976
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.08 E-value=7.9e-10 Score=118.66 Aligned_cols=128 Identities=25% Similarity=0.371 Sum_probs=96.2
Q ss_pred CCCCCCCCc----ccceeeeCCC--C--CcEEEEecCCCCceeecCCcccccccccccccccccccCCCCChhhhcCCCC
Q 045619 3 SWAEGTDCC----SWDGVTCDNV--T--GNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKEL 74 (615)
Q Consensus 3 ~~~~~~~~~----~~~~~~~~~~--~--~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~~~l~~l~~L 74 (615)
.|. +..|+ .|.|++|... . ..++.|+|+.+.+.|. +|..+..+++|
T Consensus 391 ~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~-------------------------ip~~i~~L~~L 444 (623)
T PLN03150 391 GWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGF-------------------------IPNDISKLRHL 444 (623)
T ss_pred CCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCcccc-------------------------CCHHHhCCCCC
Confidence 686 55664 7999999522 1 2588889888877665 66778888888
Q ss_pred ceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEE
Q 045619 75 TYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLD 154 (615)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~ 154 (615)
+.|+|++|.+.+.+|..+..+++|+.|++++|++. +.+|..+.++++|++|++++|.+....|..+.....++..++
T Consensus 445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls---g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN---GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC---CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence 88888888888888888888888888888888876 677777888888888888887777766666654434555666
Q ss_pred cCCCC
Q 045619 155 LSGTG 159 (615)
Q Consensus 155 l~~~~ 159 (615)
+.+|.
T Consensus 522 ~~~N~ 526 (623)
T PLN03150 522 FTDNA 526 (623)
T ss_pred ecCCc
Confidence 66554
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.04 E-value=3.1e-11 Score=112.27 Aligned_cols=89 Identities=27% Similarity=0.363 Sum_probs=55.7
Q ss_pred HhhccccceEeCCCCccCc----cCCccccCCCCCcEEeCcCCcCcccCCccc-----cCCCCCCEEeCCCCcccccch-
Q 045619 494 KRIITILTTIDLSSNQFQA----EIPRVLGDFKSLIVLNLSHNGLTGSIPVSF-----ANMTALESLDLSSNKLHGRIL- 563 (615)
Q Consensus 494 ~~~~~~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~- 563 (615)
+..+++|+.||+.+|-++. .+...+..+++|++|++++|.+.......| ...|+|+.|.+.+|.|+....
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 3446777777777776653 234556677777777777777764332222 225777788877777765322
Q ss_pred ---hhhhhcCcCCeEEcccccc
Q 045619 564 ---EQLLSVTALASLNLSYNRL 582 (615)
Q Consensus 564 ---~~~~~l~~L~~L~l~~n~i 582 (615)
..+...+.|+.|++++|.+
T Consensus 289 ~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 289 ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhcchhhHHhcCCcccc
Confidence 2334457777777877777
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=3.1e-11 Score=112.29 Aligned_cols=240 Identities=19% Similarity=0.207 Sum_probs=121.8
Q ss_pred hhcCCCCceeeCCCCccCCC----CchhhhcCCCCcEEecCCCcCccccCcchh-------hccCCCCCCEEecccccCC
Q 045619 68 FLRLKELTYLNLSYTRFSGL----LPQEISHMSKLTHLDLFDCDMTIEQKSFDL-------LASNLTKLSVLNLGWADRS 136 (615)
Q Consensus 68 l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-------~l~~l~~L~~L~l~~~~~~ 136 (615)
+..+..+.+|+|++|.+... +...+.+.++|+..++++-........+|. .+-..++|++++||+|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 45667788888888877533 334455667788777776533222233333 3345668888888888777
Q ss_pred CCCchhhhcc---cccccEEEcCCCCCccCCCccc-------------cCCCCCcEEEcccCCCccccCC----CCCCCC
Q 045619 137 LIEPFSVLNL---SSTITVLDLSGTGMRGNFPREI-------------FQLPHLQELHLSSNKYLTGYLP----ESNWST 196 (615)
Q Consensus 137 ~~~~~~~~~l---~~~L~~L~l~~~~~~~~~~~~l-------------~~l~~L~~L~l~~~~~~~~~~~----~~~~~~ 196 (615)
...+..+..+ +..|++|++.+|.+....-..+ ..-+.|+++...+|+....... .+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 7666554433 3667777887777653322222 2235555555555543322111 111224
Q ss_pred CccEEECCCCCccc--------cccCCCCcCEEecCCcccCccccc---ccccCCCcCcEEEccCCcccCcCCCCCCCCc
Q 045619 197 SLRELDLSFSNFTG--------FLRNSEELEFLDLSNNRIHGRISK---SDSQGWKSLTYLDISNNFLTQIEQHPWKNIT 265 (615)
Q Consensus 197 ~L~~L~l~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~ 265 (615)
.|+.+.+..|.+.. .+..+++|+.||+.+|.++..... ..+..|++|+.|++++|.+..-+...
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a----- 260 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA----- 260 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH-----
Confidence 44444444444332 134445555555555544321111 11233344444444444444332200
Q ss_pred EEEcCCCccccccCCCCCCceEEEccCCccccc----CcccccCCCccceeeccccccC
Q 045619 266 VLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQ----IPPSICSLSSLEYLSLSHNNLN 320 (615)
Q Consensus 266 ~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~ 320 (615)
+........|+|+.+.+.+|.++.. +.......+.|+.|++++|.+.
T Consensus 261 --------~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 261 --------FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred --------HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 0000111145555555555555432 2222345688888888888873
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=7.7e-10 Score=100.74 Aligned_cols=104 Identities=24% Similarity=0.283 Sum_probs=71.3
Q ss_pred ccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEE
Q 045619 497 ITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLN 576 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 576 (615)
.|.++.|+++.|.|... ..++.+++|++|+|++|.++ .+..+=..+-+.+.|.+++|.+.. ..++.++-+|..|+
T Consensus 306 ~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLD 380 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLD 380 (490)
T ss_pred ccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheecc
Confidence 46677788888877633 33777788888888888776 333343446677778888877753 34667777788888
Q ss_pred ccccccee--cCCCCCCCCCccCcccCCCcC
Q 045619 577 LSYNRLWG--RIPRGNQFNTFENDSYIGNIH 605 (615)
Q Consensus 577 l~~n~i~~--~~p~~~~~~~~~~~~~~~~~~ 605 (615)
+++|+|.. .+..+|.++-++.+.+.+||.
T Consensus 381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 88887753 255566677777777776664
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.2e-09 Score=78.43 Aligned_cols=61 Identities=41% Similarity=0.500 Sum_probs=36.3
Q ss_pred CCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccc
Q 045619 522 KSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRL 582 (615)
Q Consensus 522 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i 582 (615)
++|++|++++|+++...+..|..+++|++|++++|.+....+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3455666666666544445566666666666666666655555666666666666666654
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=2.9e-09 Score=93.13 Aligned_cols=127 Identities=21% Similarity=0.261 Sum_probs=44.3
Q ss_pred CCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEc
Q 045619 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVL 412 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 412 (615)
++++|+|+++.|... +.....+.+|+.|++++|.|+.. +.+..++.|+.|++++|.|++........+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 466677777766522 12222235677777777777643 34666777777777777776543322235677777777
Q ss_pred cCCcccCccCCCccCCCCCcccEEEccCCcCcCCCc--hHHHhchhhhcccccC
Q 045619 413 RSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLP--RWIFVSLEAMKNVDEK 464 (615)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~~L~~l~~~ 464 (615)
++|++..... ...+..+++|+.|++.+|++..... ..++..+|+|+.++-.
T Consensus 96 ~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 7777765322 2334567777777777777764422 2356677777777743
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=4.4e-09 Score=107.98 Aligned_cols=83 Identities=40% Similarity=0.511 Sum_probs=36.7
Q ss_pred cceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEccc
Q 045619 500 LTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSY 579 (615)
Q Consensus 500 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 579 (615)
|+++.+++|++. ..+..+..+..+..+.+.+|++. ..+..+..+++++.|++++|.++.... +..+.+++.|++++
T Consensus 211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG 286 (394)
T ss_pred hhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccC
Confidence 444444444322 22333444444444444444444 223344444445555555554443222 44444555555555
Q ss_pred ccceecC
Q 045619 580 NRLWGRI 586 (615)
Q Consensus 580 n~i~~~~ 586 (615)
|.+...+
T Consensus 287 n~~~~~~ 293 (394)
T COG4886 287 NSLSNAL 293 (394)
T ss_pred ccccccc
Confidence 4444333
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=2.7e-09 Score=93.34 Aligned_cols=103 Identities=26% Similarity=0.315 Sum_probs=31.8
Q ss_pred ccccceEeCCCCccCccCCcccc-CCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeE
Q 045619 497 ITILTTIDLSSNQFQAEIPRVLG-DFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 575 (615)
+..+++|++.+|.|..+ +.++ .+.+|+.|++++|.|+. + +.+..++.|+.|++++|+++...+.....+++|++|
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 45578888888888743 3455 57788888888888873 3 357778888888888888875543323467888888
Q ss_pred EcccccceecCCC---CCCCCCccCcccCCCc
Q 045619 576 NLSYNRLWGRIPR---GNQFNTFENDSYIGNI 604 (615)
Q Consensus 576 ~l~~n~i~~~~p~---~~~~~~~~~~~~~~~~ 604 (615)
++++|.|.. +.+ ...+++++.|+..|||
T Consensus 94 ~L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 94 YLSNNKISD-LNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp E-TTS---S-CCCCGGGGG-TT--EEE-TT-G
T ss_pred ECcCCcCCC-hHHhHHHHcCCCcceeeccCCc
Confidence 888888853 222 1234555555555555
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=2.6e-09 Score=76.58 Aligned_cols=61 Identities=38% Similarity=0.554 Sum_probs=57.1
Q ss_pred cccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcc
Q 045619 498 TILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKL 558 (615)
Q Consensus 498 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 558 (615)
|+|+.|++++|++....+..|..+++|++|+|++|+++...+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999988888999999999999999999977889999999999999999975
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=1.4e-09 Score=99.05 Aligned_cols=127 Identities=26% Similarity=0.317 Sum_probs=67.4
Q ss_pred cCCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCC-CCCCCCcEEEcCCCccccccC--CCCCCceEEE
Q 045619 213 RNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLRNNTIQGTIL--VPPPSTRAFL 289 (615)
Q Consensus 213 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~--~~~~~L~~L~ 289 (615)
..++.|+++|+++|.|+ .+...+ .-.|.++.|+++.|.+..+.. ..+++|+.|++++|.++.... ..+.++++|.
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred chHhhhhhccccccchh-hhhhhh-hhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 33444555555555554 333332 344555555555555554444 334455555555555443222 2255566666
Q ss_pred ccCCcccccCcccccCCCccceeeccccccCCCCC--CChhccccCCcEEEccCCccc
Q 045619 290 FSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIP--PCLGNFSTQLTILHLNNNKLQ 345 (615)
Q Consensus 290 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~~L~~L~L~~~~i~ 345 (615)
+.+|.+.+. .++..+.+|..|++++|+|. .+. ..++.++ .|+.+.+.+|++.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LP-CLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLP-CLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchh-hHHHhccccccc-HHHHHhhcCCCcc
Confidence 666655422 44566677777777777765 222 3445554 5777777777766
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=2.5e-08 Score=109.48 Aligned_cols=93 Identities=28% Similarity=0.279 Sum_probs=56.2
Q ss_pred ccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCccc-CCccccCCCCCCEEeCCCCcccccchh---hhhhcCcC
Q 045619 497 ITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGS-IPVSFANMTALESLDLSSNKLHGRILE---QLLSVTAL 572 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L 572 (615)
.++|+.|++..|+..+........+..+.++.+..+.+.+. .....+.++++..+.+.+=.+...... .++.+|.+
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccc
Confidence 68899999999887766665666667777666776666543 233445555555555554332221111 12446777
Q ss_pred CeEEcccc-cceecCCCC
Q 045619 573 ASLNLSYN-RLWGRIPRG 589 (615)
Q Consensus 573 ~~L~l~~n-~i~~~~p~~ 589 (615)
..+.+.+| .....+|..
T Consensus 849 ~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 849 STLTIVGCEEKLKEYPDG 866 (889)
T ss_pred cccceeccccceeecCCc
Confidence 77777775 555566665
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.76 E-value=6.9e-10 Score=109.78 Aligned_cols=191 Identities=26% Similarity=0.399 Sum_probs=135.6
Q ss_pred cEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccC
Q 045619 335 TILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRS 414 (615)
Q Consensus 335 ~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 414 (615)
...+++.|++. .+|..+..+ -.|+.+.++.|.+- .+|..+.++..|++++++.|++ ...|..++.++ |+.|.+++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f-~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAF-VSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchHHHHH-HHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEec
Confidence 45566777766 555554333 46777777777776 6677777888888888888887 55566666665 78888888
Q ss_pred CcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHH
Q 045619 415 NRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLK 494 (615)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (615)
|+++...... .....|..+|.+.|.+.. +|..+
T Consensus 153 Nkl~~lp~~i---g~~~tl~~ld~s~nei~s-lpsql------------------------------------------- 185 (722)
T KOG0532|consen 153 NKLTSLPEEI---GLLPTLAHLDVSKNEIQS-LPSQL------------------------------------------- 185 (722)
T ss_pred CccccCCccc---ccchhHHHhhhhhhhhhh-chHHh-------------------------------------------
Confidence 8876533322 367788888888888763 33221
Q ss_pred hhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhh---hhcCc
Q 045619 495 RIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQL---LSVTA 571 (615)
Q Consensus 495 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~ 571 (615)
.++.+|+.|.+..|++. .+|+.+. .=.|..||+++|+++ .+|-+|.++..|++|.|.+|.+.. .|..+ +++.-
T Consensus 186 ~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHI 261 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHI 261 (722)
T ss_pred hhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceee
Confidence 23466777888888887 4555566 345788999999998 789999999999999999998874 34333 55778
Q ss_pred CCeEEccccc
Q 045619 572 LASLNLSYNR 581 (615)
Q Consensus 572 L~~L~l~~n~ 581 (615)
.++|+++.|+
T Consensus 262 FKyL~~qA~q 271 (722)
T KOG0532|consen 262 FKYLSTQACQ 271 (722)
T ss_pred eeeecchhcc
Confidence 8999999885
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=6e-09 Score=114.35 Aligned_cols=148 Identities=27% Similarity=0.274 Sum_probs=99.6
Q ss_pred CcEEEEecCCCCceeecCCccccccccccccccccccc--CCCCCh-hhhcCCCCceeeCCCCccCCCCchhhhcCCCCc
Q 045619 23 GNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFN--GSQISP-EFLRLKELTYLNLSYTRFSGLLPQEISHMSKLT 99 (615)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~--~~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 99 (615)
..+|++++..+.+.-... -.....|++|-+.+.. ...++. .|..++.|++|||++|.-.+.+|+.++.+.+||
T Consensus 523 ~~~rr~s~~~~~~~~~~~----~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG----SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred hheeEEEEeccchhhccC----CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 467788877776642211 1122356665555443 333444 478899999999998876668999999999999
Q ss_pred EEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCc--cCCCccccCCCCCcEE
Q 045619 100 HLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMR--GNFPREIFQLPHLQEL 177 (615)
Q Consensus 100 ~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L 177 (615)
+|+++++.+ ..+|..+.++..|.+|++..+......+.....+ .+|++|.+...... ......+..+.+|+.+
T Consensus 599 yL~L~~t~I----~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L-~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 599 YLDLSDTGI----SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL-QSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred cccccCCCc----cccchHHHHHHhhheeccccccccccccchhhhc-ccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 999999987 4889999999999999998877655554444445 88888888665421 1222334444555544
Q ss_pred Ec
Q 045619 178 HL 179 (615)
Q Consensus 178 ~l 179 (615)
..
T Consensus 674 s~ 675 (889)
T KOG4658|consen 674 SI 675 (889)
T ss_pred ee
Confidence 44
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=2.9e-10 Score=112.32 Aligned_cols=172 Identities=28% Similarity=0.354 Sum_probs=139.7
Q ss_pred cccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEE
Q 045619 358 SLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIID 437 (615)
Q Consensus 358 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 437 (615)
--...+++.|.+. .+|..+..+..|+.+.+..|.+ ..+|..+..+..|++++++.|++....... ..--|+.|-
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l----C~lpLkvli 149 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLSHLPDGL----CDLPLKVLI 149 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhhcCChhh----hcCcceeEE
Confidence 3455688888887 6777888888999999999988 677888999999999999999887533221 223577888
Q ss_pred ccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCcc
Q 045619 438 LSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRV 517 (615)
Q Consensus 438 l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 517 (615)
+++|+++ .+|..+ ...+.|..||.+.|.+. .+|..
T Consensus 150 ~sNNkl~-~lp~~i-------------------------------------------g~~~tl~~ld~s~nei~-slpsq 184 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEI-------------------------------------------GLLPTLAHLDVSKNEIQ-SLPSQ 184 (722)
T ss_pred EecCccc-cCCccc-------------------------------------------ccchhHHHhhhhhhhhh-hchHH
Confidence 8888887 444332 11466888999999998 57778
Q ss_pred ccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccce
Q 045619 518 LGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLW 583 (615)
Q Consensus 518 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 583 (615)
++++.+|+.|++..|++. .+|+.+..+ .|.+||++.|++. .+|..|.+|..|++|-+.+||+.
T Consensus 185 l~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 999999999999999998 677777754 4999999999998 78899999999999999999995
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.3e-10 Score=102.30 Aligned_cols=94 Identities=20% Similarity=0.124 Sum_probs=60.8
Q ss_pred HhhccccceEeCCCCcc-CccCCccccCCCCCcEEeCcCCcCcccCCccc---cCCCCCCEEeCCCCcccccchhhhhhc
Q 045619 494 KRIITILTTIDLSSNQF-QAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSF---ANMTALESLDLSSNKLHGRILEQLLSV 569 (615)
Q Consensus 494 ~~~~~~L~~L~l~~~~i-~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~~l 569 (615)
.+.|++|..||+++|.. +.-....|-+++.|++|.++.|.. ++|+.+ ...|+|.+|++-++--...+.-....+
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~ 386 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEML 386 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhC
Confidence 35588999999999854 333344567889999999999976 356554 556899999998875544443333456
Q ss_pred CcCCeEEcccccceecCCCCCC
Q 045619 570 TALASLNLSYNRLWGRIPRGNQ 591 (615)
Q Consensus 570 ~~L~~L~l~~n~i~~~~p~~~~ 591 (615)
++|+.-.-..|-+ +.|..++
T Consensus 387 ~~lkin~q~~~~i--arpv~~~ 406 (419)
T KOG2120|consen 387 SHLKINCQHFNFI--ARPVSGQ 406 (419)
T ss_pred ccccccceeeeee--ecccccc
Confidence 6666533333333 2355554
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=4.1e-08 Score=100.77 Aligned_cols=177 Identities=32% Similarity=0.477 Sum_probs=95.0
Q ss_pred CcCcEEEccCCcccCcCC--CCCC-CCcEEEcCCCccccccCCCCCCceEEEccCCcccccCcccccCCCccceeecccc
Q 045619 241 KSLTYLDISNNFLTQIEQ--HPWK-NITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHN 317 (615)
Q Consensus 241 ~~L~~L~l~~~~~~~~~~--~~~~-~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 317 (615)
+.++.|++.++.++++.+ .... +|+.|++++|.+.. ++..+..++.|+.|++++|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~----------------------l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES----------------------LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhh----------------------hhhhhhccccccccccCCc
Confidence 455666666666665555 1221 45555555555542 2234455566666666666
Q ss_pred ccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccC
Q 045619 318 NLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTF 397 (615)
Q Consensus 318 ~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 397 (615)
++. .+|...... +.|+.|++++|++. .+|.... ....|+++.+++|.+. ..+..+..+..+..+.+.+|++...
T Consensus 174 ~l~-~l~~~~~~~-~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~- 247 (394)
T COG4886 174 DLS-DLPKLLSNL-SNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL- 247 (394)
T ss_pred hhh-hhhhhhhhh-hhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-
Confidence 655 444433222 25666666666665 3333211 1134666666666433 2334455556666666666665332
Q ss_pred ccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCch
Q 045619 398 PSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPR 449 (615)
Q Consensus 398 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 449 (615)
+..+..+++++.|++++|.+..... +....+++.++++++.+....+.
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cchhccccccceecccccccccccc----ccccCccCEEeccCccccccchh
Confidence 4455666666666666666655333 35566667777777666655444
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.61 E-value=6.4e-09 Score=106.82 Aligned_cols=222 Identities=24% Similarity=0.242 Sum_probs=107.8
Q ss_pred CCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEc
Q 045619 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVL 412 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 412 (615)
+++.+++.+|.|..... . ...+++|++|++++|.|+.. ..+..++.|+.|++++|.|++. ..+..++.|+.+++
T Consensus 96 ~l~~l~l~~n~i~~i~~-~-l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIEN-L-LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL 169 (414)
T ss_pred ceeeeeccccchhhccc-c-hhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence 45555555555542221 0 11225555666666655533 2234444456666666655433 23444555666666
Q ss_pred cCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhh
Q 045619 413 RSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVV 492 (615)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (615)
++|++...... . ...+.+++.+++.+|.+...........+..+ .+.......... .
T Consensus 170 ~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~---~l~~n~i~~~~~---------------l--- 226 (414)
T KOG0531|consen 170 SYNRIVDIEND-E-LSELISLEELDLGGNSIREIEGLDLLKKLVLL---SLLDNKISKLEG---------------L--- 226 (414)
T ss_pred Ccchhhhhhhh-h-hhhccchHHHhccCCchhcccchHHHHHHHHh---hcccccceeccC---------------c---
Confidence 66555442221 0 13455566666666655433222211111111 111110000000 0
Q ss_pred HHhhcc--ccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCccccc---chhh-h
Q 045619 493 LKRIIT--ILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGR---ILEQ-L 566 (615)
Q Consensus 493 ~~~~~~--~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~-~ 566 (615)
.... +|+.+++++|++.. .+..+..+..++.|++.+|++.. -..+...+.+..+....+.+... .... .
T Consensus 227 --~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (414)
T KOG0531|consen 227 --NELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYIT 301 (414)
T ss_pred --ccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccc
Confidence 0011 36777777777763 22556677777777777777752 23345566667777777765421 1111 2
Q ss_pred hhcCcCCeEEcccccceecCCC
Q 045619 567 LSVTALASLNLSYNRLWGRIPR 588 (615)
Q Consensus 567 ~~l~~L~~L~l~~n~i~~~~p~ 588 (615)
...+.++..++.+|++....+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 302 SAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred cccccccccccccCcccccccc
Confidence 3456777777777777665543
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.54 E-value=1.3e-09 Score=103.94 Aligned_cols=264 Identities=19% Similarity=0.137 Sum_probs=148.2
Q ss_pred ccCCCccceeeccccc-cCCCCCCChhccccCCcEEEccCCc-ccccCchhhhcCCCcccEEEcCCCc-ccCC-CCcccC
Q 045619 303 ICSLSSLEYLSLSHNN-LNGTIPPCLGNFSTQLTILHLNNNK-LQGRIPDAFANGSCSLRSLDLNSNK-LEGP-FPRYLA 378 (615)
Q Consensus 303 l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-i~~~~~~~~~~~~~~L~~L~l~~~~-i~~~-~~~~~~ 378 (615)
...++++++|.+.+|. +++..-..+...+++++++++..|. +++..-.....++++|++++++.|. |.+. +...+.
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 3456777777777763 3333334444555677777777753 4433344456666777777777765 3321 223445
Q ss_pred CCCCccEEEcCCCcCCccCcccc----CCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCc-hHHHh
Q 045619 379 DCDELEVVNVGNNMIGDTFPSWL----GCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLP-RWIFV 453 (615)
Q Consensus 379 ~l~~L~~L~l~~n~i~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~ 453 (615)
++..++.+...||.= ...+.+ ..++.+.++++..|....+.....+...+..|+.++.+++...+..+ ..+-.
T Consensus 240 G~~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred cchhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 666666666666531 111111 24555666666666544333333333556677777777765433333 34556
Q ss_pred chhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCc--cCCccccCCCCCcEEeCcC
Q 045619 454 SLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQA--EIPRVLGDFKSLIVLNLSH 531 (615)
Q Consensus 454 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~L~~ 531 (615)
+..+|+.+.+.+|+..... -...+-+++++|+.+++.++.... .+...=.+++.||.|.|++
T Consensus 318 ~~~~L~~l~l~~c~~fsd~----------------~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslsh 381 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDR----------------GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSH 381 (483)
T ss_pred CCCceEEEeccccchhhhh----------------hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhh
Confidence 6677777777776542211 111223456778888887775431 1222335677888888887
Q ss_pred CcC-cccC----CccccCCCCCCEEeCCCCcc-cccchhhhhhcCcCCeEEccccccee
Q 045619 532 NGL-TGSI----PVSFANMTALESLDLSSNKL-HGRILEQLLSVTALASLNLSYNRLWG 584 (615)
Q Consensus 532 n~l-~~~~----~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~l~~n~i~~ 584 (615)
|.. ++.. ..+-.....|+.+.++++.. +....+.+..+++|+.+++-+|.-..
T Consensus 382 ce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 382 CELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 754 3221 12223356778888888854 33444556667788887777765443
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=5.5e-08 Score=88.87 Aligned_cols=180 Identities=21% Similarity=0.223 Sum_probs=105.1
Q ss_pred CCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCccC-CCccccCCCC
Q 045619 95 MSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGN-FPREIFQLPH 173 (615)
Q Consensus 95 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~-~~~~l~~l~~ 173 (615)
+.+++.++|.+|++..+ ..+.+.+.++|.|++|+++.|++.......-... .+|+.|-+.+..+.-. ....+..+|.
T Consensus 70 ~~~v~elDL~~N~iSdW-seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~-~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDW-SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL-KNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhhcccchhccH-HHHHHHHhcCccceEeeccCCcCCCccccCcccc-cceEEEEEcCCCCChhhhhhhhhcchh
Confidence 34444455555544433 2233344455555555555544433221111222 6777777777765422 2234556777
Q ss_pred CcEEEcccCCCc---cccCCCCCCCCCccEEECCCCCcccc------ccCCCCcCEEecCCcccCcccccccccCCCcCc
Q 045619 174 LQELHLSSNKYL---TGYLPESNWSTSLRELDLSFSNFTGF------LRNSEELEFLDLSNNRIHGRISKSDSQGWKSLT 244 (615)
Q Consensus 174 L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 244 (615)
+++|.++.|... .+......+.+.++++....|...-+ ..-+|++..+.+..|.+...-....+..+|.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 888877777322 22122223445677777766654432 445688888888888877555555556778888
Q ss_pred EEEccCCcccCcCC----CCCCCCcEEEcCCCcccc
Q 045619 245 YLDISNNFLTQIEQ----HPWKNITVLNLRNNTIQG 276 (615)
Q Consensus 245 ~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~i~~ 276 (615)
-|+++.+++.++.. ..|+.|..|.+.++.+.+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 88888888887765 567888888888877654
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.51 E-value=1.3e-08 Score=104.52 Aligned_cols=65 Identities=25% Similarity=0.175 Sum_probs=47.3
Q ss_pred ccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcc---cCCcc-ccCCCCCCEEeCCCCcccccch
Q 045619 497 ITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTG---SIPVS-FANMTALESLDLSSNKLHGRIL 563 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~-~~~l~~L~~L~l~~n~~~~~~~ 563 (615)
+..+..|++.++++... ..+...+.+..+....+.+.. ..... ....+.++...+..|.+....+
T Consensus 254 ~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 254 LKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 56688899999988743 446777888888888887752 12221 4567899999999998876544
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.3e-09 Score=95.34 Aligned_cols=184 Identities=20% Similarity=0.166 Sum_probs=109.7
Q ss_pred CcccEEEcCCCcccCC-CCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccE
Q 045619 357 CSLRSLDLNSNKLEGP-FPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRI 435 (615)
Q Consensus 357 ~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 435 (615)
+.++.+|+++..|+.. +-..+..|..|+.|.+.|+++.+.+...++...+|+.++++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s------------------- 245 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS------------------- 245 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-------------------
Confidence 3566777776666521 22234456666666666666655555555555555555555543
Q ss_pred EEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccC--c-
Q 045619 436 IDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQ--A- 512 (615)
Q Consensus 436 L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~--~- 512 (615)
.++......++.++++|..++++.|..... ..........+.|+.|+++|+.-. .
T Consensus 246 ------G~t~n~~~ll~~scs~L~~LNlsWc~l~~~----------------~Vtv~V~hise~l~~LNlsG~rrnl~~s 303 (419)
T KOG2120|consen 246 ------GFTENALQLLLSSCSRLDELNLSWCFLFTE----------------KVTVAVAHISETLTQLNLSGYRRNLQKS 303 (419)
T ss_pred ------ccchhHHHHHHHhhhhHhhcCchHhhccch----------------hhhHHHhhhchhhhhhhhhhhHhhhhhh
Confidence 233333334455555666655555532211 122223344577888999888532 1
Q ss_pred cCCccccCCCCCcEEeCcCCc-CcccCCccccCCCCCCEEeCCCCcccccchhh---hhhcCcCCeEEcccccce
Q 045619 513 EIPRVLGDFKSLIVLNLSHNG-LTGSIPVSFANMTALESLDLSSNKLHGRILEQ---LLSVTALASLNLSYNRLW 583 (615)
Q Consensus 513 ~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~l~~n~i~ 583 (615)
.+..--..++.|.+|+|++|- ++...-..|..++.|++|.++.|.. +.|.. +...|+|.+|++.|+--.
T Consensus 304 h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 304 HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred HHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence 112223588999999999984 4432233456689999999999864 44554 466799999999887543
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.46 E-value=3.3e-09 Score=101.28 Aligned_cols=58 Identities=19% Similarity=0.111 Sum_probs=24.7
Q ss_pred CCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCc-CcCCCchHHHhchhhhcccc
Q 045619 404 LPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNE-FTGFLPRWIFVSLEAMKNVD 462 (615)
Q Consensus 404 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~l~ 462 (615)
+..|..+.+++|+........ ....+++|+.+++.++. ++......+..++|+++...
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred ccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 344445555555443322111 12344555555555553 22222333444555554444
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=4.1e-08 Score=88.46 Aligned_cols=238 Identities=18% Similarity=0.146 Sum_probs=137.1
Q ss_pred hhcCCCCceeeCCCCccCCCCchh----hhcCCCCcEEecCCCcCccccCcch-------hhccCCCCCCEEecccccCC
Q 045619 68 FLRLKELTYLNLSYTRFSGLLPQE----ISHMSKLTHLDLFDCDMTIEQKSFD-------LLASNLTKLSVLNLGWADRS 136 (615)
Q Consensus 68 l~~l~~L~~L~L~~~~~~~~~~~~----l~~l~~L~~L~L~~~~~~~~~~~~~-------~~l~~l~~L~~L~l~~~~~~ 136 (615)
+.-+..+..+|||+|.|...-.++ +++-.+|+..+++.-........++ +.+-++|+|+..+|+.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 455788888999999886543333 4455788888887654332223333 33457889999999998888
Q ss_pred CCCchhhhcc---cccccEEEcCCCCCccCCCcccc-------------CCCCCcEEEcccCCCccccCCC----CCCCC
Q 045619 137 LIEPFSVLNL---SSTITVLDLSGTGMRGNFPREIF-------------QLPHLQELHLSSNKYLTGYLPE----SNWST 196 (615)
Q Consensus 137 ~~~~~~~~~l---~~~L~~L~l~~~~~~~~~~~~l~-------------~l~~L~~L~l~~~~~~~~~~~~----~~~~~ 196 (615)
...+..+..+ ...|.||.+++|.+....-..++ .-|.|++.....|+...+.... +....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 7777655433 26788899988887643322222 3467777777777544332111 11124
Q ss_pred CccEEECCCCCcccc---------ccCCCCcCEEecCCcccCccc---ccccccCCCcCcEEEccCCcccCcCC------
Q 045619 197 SLRELDLSFSNFTGF---------LRNSEELEFLDLSNNRIHGRI---SKSDSQGWKSLTYLDISNNFLTQIEQ------ 258 (615)
Q Consensus 197 ~L~~L~l~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~------ 258 (615)
.|+++.+..|.|..- +..+.+|+.|++++|.++-.. .......|+.|+.|.+..|-++..+.
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 677777766665531 344567777777777654211 11222445566666666665554433
Q ss_pred ---CCCCCCcEEEcCCCccccccCCCCCCceEEEccCCcccccCcccc-cCCCccceeeccccccC
Q 045619 259 ---HPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSI-CSLSSLEYLSLSHNNLN 320 (615)
Q Consensus 259 ---~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~ 320 (615)
..+++|+.|....|.+.+.... ++ ..+... ..+|-|..|.+.+|.+.
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~~i~--------~~-------~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGGIIL--------DI-------SLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhhcCCCccccccchhhhcCceee--------ee-------chhhhhhcccHHHHHHHHccCcch
Confidence 2335555555555544432111 00 011111 24677778888888776
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=4.7e-07 Score=82.91 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=35.7
Q ss_pred hccccceEeCCCCccCc-cCCccccCCCCCcEEeCcCCcCccc-CCccccCCCCCCEEeCCCCcccc
Q 045619 496 IITILTTIDLSSNQFQA-EIPRVLGDFKSLIVLNLSHNGLTGS-IPVSFANMTALESLDLSSNKLHG 560 (615)
Q Consensus 496 ~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~ 560 (615)
.+|++..+.+-.|++.+ ...+.+..++.+--|+|..++|.+- ..+.+..+++|..|.++++.+..
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 35666666666666543 2234445555555666666666421 12445556666666666666543
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=9.5e-08 Score=97.57 Aligned_cols=87 Identities=36% Similarity=0.346 Sum_probs=58.1
Q ss_pred HhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCccccc-chhhhhhcCcC
Q 045619 494 KRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGR-ILEQLLSVTAL 572 (615)
Q Consensus 494 ~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L 572 (615)
.+.++.|++|||++|.+..........++ |..|+|++|.++ -...+.++.+|+.||+++|-+.+- -..-+..+.+|
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L 281 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL 281 (1096)
T ss_pred HHhcccccccccccchhccccccchhhhh-heeeeecccHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH
Confidence 34467788888888887743333334444 888888888776 234567788888888888866541 12224566778
Q ss_pred CeEEcccccce
Q 045619 573 ASLNLSYNRLW 583 (615)
Q Consensus 573 ~~L~l~~n~i~ 583 (615)
+.|.+.|||+.
T Consensus 282 ~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 282 IVLWLEGNPLC 292 (1096)
T ss_pred HHHhhcCCccc
Confidence 88888888875
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=7.4e-08 Score=98.35 Aligned_cols=183 Identities=21% Similarity=0.187 Sum_probs=117.3
Q ss_pred ChhhhcCCCCceeeCCCCccCCCCchhhhcC-CCCcEEecCCCcCccccCcchhhccC------CCCCCEEecccccCCC
Q 045619 65 SPEFLRLKELTYLNLSYTRFSGLLPQEISHM-SKLTHLDLFDCDMTIEQKSFDLLASN------LTKLSVLNLGWADRSL 137 (615)
Q Consensus 65 ~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~------l~~L~~L~l~~~~~~~ 137 (615)
|-++..|+.||+|.+.+|.+.. ..++..+ .+|++|...+.- ......+..-.+. ...|.+.+.++|.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl-~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSL-DALRHVFASCGGDISNSPVWNKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccH-HHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence 5567788899999999988763 2334433 457777655431 1110111111111 2355666666666543
Q ss_pred CCchhhhcccccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCcccc--ccCC
Q 045619 138 IEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGF--LRNS 215 (615)
Q Consensus 138 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~ 215 (615)
. ..++ .+.+.+++|++++|++.+. ..+..+++|++||+++|......-..... ..|..|.+.+|.++.. +.++
T Consensus 179 m-D~SL-qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g-c~L~~L~lrnN~l~tL~gie~L 253 (1096)
T KOG1859|consen 179 M-DESL-QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVG-CKLQLLNLRNNALTTLRGIENL 253 (1096)
T ss_pred H-HHHH-HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhh-hhheeeeecccHHHhhhhHHhh
Confidence 3 2233 3338899999999988754 36778899999999988554422222222 3488888888888775 6788
Q ss_pred CCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccC
Q 045619 216 EELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQ 255 (615)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 255 (615)
.+|+.||+++|-+.+.-.-...+.+..|+.|.|.+|.+-.
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8888999998887755444445667788888888887653
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.91 E-value=2.7e-06 Score=76.99 Aligned_cols=239 Identities=18% Similarity=0.124 Sum_probs=115.6
Q ss_pred hhcCCCCcEEecCCCcCc-cccCcchhhccCCCCCCEEecccccCCCC---Cc-------hhhhcccccccEEEcCCCCC
Q 045619 92 ISHMSKLTHLDLFDCDMT-IEQKSFDLLASNLTKLSVLNLGWADRSLI---EP-------FSVLNLSSTITVLDLSGTGM 160 (615)
Q Consensus 92 l~~l~~L~~L~L~~~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~-------~~~~~l~~~L~~L~l~~~~~ 160 (615)
+..+..+..++|++|.+. .....+...+.+-.+|+..+++.-..... .+ ..+.++ |.++..++++|-+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkc-p~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKC-PRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcC-Ccceeeecccccc
Confidence 455788899999999886 22233445566677788777765332211 11 122233 6677777776666
Q ss_pred ccCCCccc----cCCCCCcEEEcccCCCccccCCCC-------------CCCCCccEEECCCCCccc--------cccCC
Q 045619 161 RGNFPREI----FQLPHLQELHLSSNKYLTGYLPES-------------NWSTSLRELDLSFSNFTG--------FLRNS 215 (615)
Q Consensus 161 ~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~--------~~~~~ 215 (615)
....|..+ ++-..|++|.+++|.........+ ...+.|+.+....|.+.. .+...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 55444432 344666666666663322111111 111445555554444332 12223
Q ss_pred CCcCEEecCCcccCccccc----ccccCCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEcc
Q 045619 216 EELEFLDLSNNRIHGRISK----SDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFS 291 (615)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~ 291 (615)
.+|+.+.+..|.|...... .-...+.+|+.|+++.|-++..... +-+......+.|+.|.+.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~--------------~La~al~~W~~lrEL~ln 250 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR--------------YLADALCEWNLLRELRLN 250 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH--------------HHHHHhcccchhhhcccc
Confidence 4445555544444311000 0012234444444444443332210 001111113335556666
Q ss_pred CCcccccCcccc------cCCCccceeeccccccCCC------CCCChhccccCCcEEEccCCccc
Q 045619 292 NNKLFGQIPPSI------CSLSSLEYLSLSHNNLNGT------IPPCLGNFSTQLTILHLNNNKLQ 345 (615)
Q Consensus 292 ~~~~~~~~~~~l------~~~~~L~~L~l~~~~l~~~------~~~~~~~~~~~L~~L~L~~~~i~ 345 (615)
+|-+.......+ ...++|..|....|.+.+. ++.......|-|..|.+.+|++.
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 555443332221 1357788888887766532 22222222346778888888876
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.2e-05 Score=52.47 Aligned_cols=34 Identities=41% Similarity=0.670 Sum_probs=12.2
Q ss_pred CcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcc
Q 045619 524 LIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKL 558 (615)
Q Consensus 524 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 558 (615)
|++|++++|+|+ .+|..++++++|+.|++++|++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 333444444433 2222333344444444444433
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.81 E-value=2.1e-06 Score=69.50 Aligned_cols=108 Identities=28% Similarity=0.336 Sum_probs=86.0
Q ss_pred ccccceEeCCCCccCccCCcccc-CCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeE
Q 045619 497 ITILTTIDLSSNQFQAEIPRVLG-DFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 575 (615)
-..|+..++++|.+. ..|..|. .++.++.|+|++|.|. .+|+.+..++.|+.|+++.|.+. ..|..+..+.+|-.|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 356888999999998 4565564 5569999999999999 78888999999999999999988 566777779999999
Q ss_pred EcccccceecCCCCCCCCCccCcccCCCcCccC
Q 045619 576 NLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCG 608 (615)
Q Consensus 576 ~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 608 (615)
+..+|.+. .||.+...++...+--.||-.+.|
T Consensus 129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred cCCCCccc-cCcHHHhccccHHHHHhcCCcccc
Confidence 99999886 677776666666666666655444
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=2.6e-05 Score=50.94 Aligned_cols=37 Identities=38% Similarity=0.522 Sum_probs=31.4
Q ss_pred CCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccce
Q 045619 546 TALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLW 583 (615)
Q Consensus 546 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 583 (615)
++|++|++++|+++. +|..++++++|++|++++|+|.
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 579999999999995 5557899999999999999997
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=0.00039 Score=69.01 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=70.4
Q ss_pred cCCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCC-CCCCceEEEccCCcccccCcccccCCCccceeeccc
Q 045619 238 QGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILV-PPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSH 316 (615)
Q Consensus 238 ~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 316 (615)
..+.+++.|++++|.++.++ ....+|+.|.+.+|.--...+. .+++|+.|.+.+|.....+| +.|+.|++..
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~~ 121 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP------ESVRSLEIKG 121 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc------cccceEEeCC
Confidence 34578888889888888776 3334688888877543222222 24567777777663222232 3455555554
Q ss_pred cccCCCCCCChhccccCCcEEEccCCc-cc-ccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCC
Q 045619 317 NNLNGTIPPCLGNFSTQLTILHLNNNK-LQ-GRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNN 391 (615)
Q Consensus 317 ~~l~~~~~~~~~~~~~~L~~L~L~~~~-i~-~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n 391 (615)
+... . +..++++|+.|.+.++. .. ...+.. ..++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 122 n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~---LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 122 SATD-S----IKNVPNGLTSLSINSYNPENQARIDNL---ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCCc-c----cccCcchHhheeccccccccccccccc---cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 4322 1 22233456666654322 11 011111 1246777777666644 2332222 46666666654
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.67 E-value=2.6e-06 Score=68.91 Aligned_cols=104 Identities=28% Similarity=0.330 Sum_probs=82.8
Q ss_pred cccceEeCCCCccCccCCc---cccCCCCCcEEeCcCCcCcccCCccccC-CCCCCEEeCCCCcccccchhhhhhcCcCC
Q 045619 498 TILTTIDLSSNQFQAEIPR---VLGDFKSLIVLNLSHNGLTGSIPVSFAN-MTALESLDLSSNKLHGRILEQLLSVTALA 573 (615)
Q Consensus 498 ~~L~~L~l~~~~i~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 573 (615)
..+..++++.|++.- ++. .+.....|+..+|++|.+. ..|..|.. ++..+.|++++|.++ .+|..+..+++|+
T Consensus 27 kE~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HHhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 347789999998872 233 3445567888899999998 56666654 568999999999998 6788899999999
Q ss_pred eEEcccccceecCCCCCCCCCccCcccCCCc
Q 045619 574 SLNLSYNRLWGRIPRGNQFNTFENDSYIGNI 604 (615)
Q Consensus 574 ~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~ 604 (615)
.|+++.|++.......+++.+|..|..-+|.
T Consensus 104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred hcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 9999999999887777777888877766553
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=0.00025 Score=70.32 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=19.9
Q ss_pred ccccceEeCCCCccCccCCccccCCCCCcEEeCcCC
Q 045619 497 ITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHN 532 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n 532 (615)
+++|++|++++|... ..|..+. .+|+.|.++.+
T Consensus 155 PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 155 SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 356777777777654 3343333 47777777655
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=1.5e-05 Score=85.66 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=102.0
Q ss_pred Cccceeecccccc-CCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccE
Q 045619 307 SSLEYLSLSHNNL-NGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEV 385 (615)
Q Consensus 307 ~~L~~L~l~~~~l-~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 385 (615)
.+|++|+++|... ...-|..++...|+|+.|.+.+-.+....-......+|+|..||++++.++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5778888877532 22334455666678888888887665333333444558888999998888754 56777888888
Q ss_pred EEcCCCcCCc-cCccccCCCCCCcEEEccCCcccCccCC----CccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcc
Q 045619 386 VNVGNNMIGD-TFPSWLGCLPGLNILVLRSNRFYGPLCE----SNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKN 460 (615)
Q Consensus 386 L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~ 460 (615)
|.+.+=.+.. .....+.++++|+.|+++..+....... ......+|.|+.||+++..+.......+...=++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8887765543 2223466788899999988765443211 1123457899999999888887666666555555555
Q ss_pred cc
Q 045619 461 VD 462 (615)
Q Consensus 461 l~ 462 (615)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 44
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=1.9e-05 Score=84.94 Aligned_cols=83 Identities=18% Similarity=0.297 Sum_probs=34.3
Q ss_pred CCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCcc-CCCccccCCCC
Q 045619 95 MSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRG-NFPREIFQLPH 173 (615)
Q Consensus 95 l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~-~~~~~l~~l~~ 173 (615)
+|.|+.|.+.+-++.. ..+.....++++|..||++++++... ..+..+ ++|+.|.+.+-.+.. .....+.++++
T Consensus 147 LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L-knLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTNISNL--SGISRL-KNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred CcccceEEecCceecc--hhHHHHhhccCccceeecCCCCccCc--HHHhcc-ccHHHHhccCCCCCchhhHHHHhcccC
Confidence 4555555555443321 11233334444444444444444433 233333 444444444433332 11123344444
Q ss_pred CcEEEcccC
Q 045619 174 LQELHLSSN 182 (615)
Q Consensus 174 L~~L~l~~~ 182 (615)
|+.||++..
T Consensus 222 L~vLDIS~~ 230 (699)
T KOG3665|consen 222 LRVLDISRD 230 (699)
T ss_pred CCeeecccc
Confidence 444444443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.51 E-value=0.00024 Score=62.01 Aligned_cols=90 Identities=23% Similarity=0.193 Sum_probs=41.5
Q ss_pred ccCCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEcc
Q 045619 212 LRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFS 291 (615)
Q Consensus 212 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~ 291 (615)
+..++.|..|.+.+|+|+ .+.......+++|+.|.+.+|.+..+.. -.....+|.|++|.+.
T Consensus 60 lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~d-----------------l~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGD-----------------LDPLASCPKLEYLTLL 121 (233)
T ss_pred CCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhh-----------------cchhccCCccceeeec
Confidence 334444445555555544 3333333444555555555554443322 0011124455555555
Q ss_pred CCcccccC---cccccCCCccceeecccccc
Q 045619 292 NNKLFGQI---PPSICSLSSLEYLSLSHNNL 319 (615)
Q Consensus 292 ~~~~~~~~---~~~l~~~~~L~~L~l~~~~l 319 (615)
+|++...- .-.+..+|+|+.||+++-..
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 55444221 12345677777777776543
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.43 E-value=0.00021 Score=62.31 Aligned_cols=83 Identities=27% Similarity=0.246 Sum_probs=47.9
Q ss_pred ccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccc-hhhhhhcCcCCeEEc
Q 045619 499 ILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRI-LEQLLSVTALASLNL 577 (615)
Q Consensus 499 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l 577 (615)
....+|+++|.+.. -..|.+++.|.+|.+.+|+|+.+.|.--..+++|+.|.+.+|.+.... .+-+..+|.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44556666666642 234566666666666666666555554455566666666666654311 112345566666666
Q ss_pred ccccce
Q 045619 578 SYNRLW 583 (615)
Q Consensus 578 ~~n~i~ 583 (615)
-+||+.
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 666664
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.06 E-value=9.3e-05 Score=78.41 Aligned_cols=83 Identities=24% Similarity=0.197 Sum_probs=40.0
Q ss_pred hhHHhhccccceEeCCCCccCccC-CccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccc-cchhhhhh
Q 045619 491 VVLKRIITILTTIDLSSNQFQAEI-PRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHG-RILEQLLS 568 (615)
Q Consensus 491 ~~~~~~~~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~ 568 (615)
......++.++.+.+..+.+.... ...+.+++.|+ ..+.. ......+++.|+++.+.... ........
T Consensus 355 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~ 424 (482)
T KOG1947|consen 355 ELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RLCRSDSLRVLNLSDCRLVTDKGLRCLAD 424 (482)
T ss_pred HHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------HhccCCccceEecccCccccccchHHHhh
Confidence 334455777777777777644322 23444555542 11111 11112226777777775432 11111111
Q ss_pred -cCcCCeEEcccccce
Q 045619 569 -VTALASLNLSYNRLW 583 (615)
Q Consensus 569 -l~~L~~L~l~~n~i~ 583 (615)
...++.+++.+++..
T Consensus 425 ~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 425 SCSNLKDLDLSGCRVI 440 (482)
T ss_pred hhhccccCCccCcccc
Confidence 455666666666554
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.99 E-value=0.0023 Score=53.84 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=15.3
Q ss_pred ccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccC
Q 045619 376 YLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRS 414 (615)
Q Consensus 376 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 414 (615)
+|.++.+|+.+.+.. .+..+....|..+++|+.+.+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 445555555555543 34344444555555555555544
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.83 E-value=0.00013 Score=77.23 Aligned_cols=38 Identities=37% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCCcEEeCcCCcCc-ccCCccccC-CCCCCEEeCCCCccc
Q 045619 522 KSLIVLNLSHNGLT-GSIPVSFAN-MTALESLDLSSNKLH 559 (615)
Q Consensus 522 ~~L~~L~L~~n~l~-~~~~~~~~~-l~~L~~L~l~~n~~~ 559 (615)
..++.|+++.+... ...-..... +..++.+++.++...
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred CccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 33889999888654 222222222 667888888888654
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00081 Score=61.39 Aligned_cols=105 Identities=23% Similarity=0.208 Sum_probs=61.9
Q ss_pred cccccccccccccCCCCChhhhcCCCCceeeCCCC--ccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCC
Q 045619 48 LLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYT--RFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKL 125 (615)
Q Consensus 48 ~~~L~~L~~~~~~~~~l~~~l~~l~~L~~L~L~~~--~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L 125 (615)
+..|..+++.+...+ --..|..+++|++|+++.| ++.+-++.-..++++|+++++++|++.... .+ .-+..+.+|
T Consensus 42 ~~~le~ls~~n~glt-t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls-tl-~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLT-TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS-TL-RPLKELENL 118 (260)
T ss_pred ccchhhhhhhcccee-ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc-cc-chhhhhcch
Confidence 444555555444433 1223566788888888888 565555544556688888888888876321 11 234566677
Q ss_pred CEEecccccCCCCCc--hhhhcccccccEEEc
Q 045619 126 SVLNLGWADRSLIEP--FSVLNLSSTITVLDL 155 (615)
Q Consensus 126 ~~L~l~~~~~~~~~~--~~~~~l~~~L~~L~l 155 (615)
..|++..|....... ..++.++++|++|+-
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 777777776554322 234444466665543
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.76 E-value=0.0049 Score=51.77 Aligned_cols=105 Identities=21% Similarity=0.262 Sum_probs=38.2
Q ss_pred ccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCC
Q 045619 303 ICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDE 382 (615)
Q Consensus 303 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~ 382 (615)
|..+++|+.+.+.. .+. .++...+...++++.+.+..+ +. .++...+..+.+++.+.+.+ .+.......|..+++
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 44444555555443 222 233332333234555555443 32 12222222223555555544 222233345555556
Q ss_pred ccEEEcCCCcCCccCccccCCCCCCcEEEccC
Q 045619 383 LEVVNVGNNMIGDTFPSWLGCLPGLNILVLRS 414 (615)
Q Consensus 383 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 414 (615)
|+.+++..+ +......+|.++ .++.+.+.+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 666665443 434444455555 555555543
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.0014 Score=59.83 Aligned_cols=106 Identities=18% Similarity=0.238 Sum_probs=54.3
Q ss_pred CcccEEEcCCCcccCCCCcccCCCCCccEEEcCCC--cCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCccc
Q 045619 357 CSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNN--MIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALR 434 (615)
Q Consensus 357 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 434 (615)
..|+.+++.+..++.. ..|..+++|+.|.++.| .+....+.....+|+|+++++++|++.. .........+.+|.
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcchh
Confidence 3444455555544422 23444556666666666 4444433334445666666666666543 11111224455666
Q ss_pred EEEccCCcCcCCCc--hHHHhchhhhcccccCC
Q 045619 435 IIDLSHNEFTGFLP--RWIFVSLEAMKNVDEKG 465 (615)
Q Consensus 435 ~L~l~~~~l~~~~~--~~~~~~~~~L~~l~~~~ 465 (615)
.||+..|..+..-- ...|..+++|+.++...
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 67776666553211 23566677776666433
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.00021 Score=65.36 Aligned_cols=80 Identities=23% Similarity=0.225 Sum_probs=61.9
Q ss_pred hhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccC-CccccCCCCCCEEeCCCCcccccchh-----hhhh
Q 045619 495 RIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSI-PVSFANMTALESLDLSSNKLHGRILE-----QLLS 568 (615)
Q Consensus 495 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~ 568 (615)
..++.|+.|.|+-|+|+... .|..|+.|++|+|..|.|.+.. ...+.++|+|+.|+|..|.-.+..+. .+.-
T Consensus 38 ~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred HhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 44788999999999998654 4789999999999999887433 25578889999999999987665444 3455
Q ss_pred cCcCCeEE
Q 045619 569 VTALASLN 576 (615)
Q Consensus 569 l~~L~~L~ 576 (615)
||+|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 78888875
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.00011 Score=67.13 Aligned_cols=100 Identities=23% Similarity=0.223 Sum_probs=48.8
Q ss_pred cccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEE
Q 045619 358 SLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIID 437 (615)
Q Consensus 358 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 437 (615)
+.++|+..+|.+.++ .....++.|++|.|+-|+|+...| +..|+.|++|++..|.|.+. .+..-+.++++|+.|+
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sl-dEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESL-DELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccH-HHHHHHhcCchhhhHh
Confidence 445555555555432 223345555555555555544332 45555555555555554331 1112234555666666
Q ss_pred ccCCcCcCCCch----HHHhchhhhcccc
Q 045619 438 LSHNEFTGFLPR----WIFVSLEAMKNVD 462 (615)
Q Consensus 438 l~~~~l~~~~~~----~~~~~~~~L~~l~ 462 (615)
+..|+-.+..+. .++.-+|+|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 655554444432 2345555555555
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.81 E-value=0.012 Score=31.66 Aligned_cols=11 Identities=64% Similarity=0.767 Sum_probs=4.4
Q ss_pred CEEeCCCCccc
Q 045619 549 ESLDLSSNKLH 559 (615)
Q Consensus 549 ~~L~l~~n~~~ 559 (615)
++|+|++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444333
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.32 E-value=0.00039 Score=71.68 Aligned_cols=84 Identities=26% Similarity=0.164 Sum_probs=37.8
Q ss_pred CcEEEccCCcccccCchhhh---cCCCcccEEEcCCCcccCCCCc----ccCCC-CCccEEEcCCCcCCccCc----ccc
Q 045619 334 LTILHLNNNKLQGRIPDAFA---NGSCSLRSLDLNSNKLEGPFPR----YLADC-DELEVVNVGNNMIGDTFP----SWL 401 (615)
Q Consensus 334 L~~L~L~~~~i~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~----~~~~l-~~L~~L~l~~n~i~~~~~----~~~ 401 (615)
+..+.+.+|.+.+.....+. ...+.|..|++++|.+.+.... .+... ..+++|++..|.+++... +.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55666666665533222221 2234566666666665522111 11221 344555555555543322 223
Q ss_pred CCCCCCcEEEccCCcc
Q 045619 402 GCLPGLNILVLRSNRF 417 (615)
Q Consensus 402 ~~l~~L~~L~l~~~~~ 417 (615)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3344455555555544
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=0.0096 Score=52.32 Aligned_cols=82 Identities=23% Similarity=0.233 Sum_probs=58.5
Q ss_pred cceEeCCCCccCccCCccccCCCCCcEEeCcCCcCccc-CCcccc-CCCCCCEEeCCCC-cccccchhhhhhcCcCCeEE
Q 045619 500 LTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGS-IPVSFA-NMTALESLDLSSN-KLHGRILEQLLSVTALASLN 576 (615)
Q Consensus 500 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~-~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~ 576 (615)
++.+|-+++.|..+.-+-+..+++++.|.+.+|+--+. -.+.++ -.++|+.|+|++| +|+......+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 77888888888766666777888888888888854311 011111 2478999999988 67777777788888888887
Q ss_pred ccccc
Q 045619 577 LSYNR 581 (615)
Q Consensus 577 l~~n~ 581 (615)
+.+=+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 77543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.02 E-value=0.018 Score=31.03 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=12.5
Q ss_pred CCceeeCCCCccCCCCchhhhc
Q 045619 73 ELTYLNLSYTRFSGLLPQEISH 94 (615)
Q Consensus 73 ~L~~L~L~~~~~~~~~~~~l~~ 94 (615)
+|++||+++|.++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566777777666 45544543
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.92 E-value=0.033 Score=49.09 Aligned_cols=86 Identities=15% Similarity=0.092 Sum_probs=62.1
Q ss_pred CCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcc
Q 045619 381 DELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKN 460 (615)
Q Consensus 381 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~ 460 (615)
..++.++-+++.|..+..+.+..+++++.|.+.+|.-..+.+........++|+.|++++|.--..-....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 45677777788777777777888888888888888766655555544567889999999885433555566777777777
Q ss_pred cccCCC
Q 045619 461 VDEKGS 466 (615)
Q Consensus 461 l~~~~~ 466 (615)
+.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 776553
No 76
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=92.76 E-value=0.065 Score=34.72 Aligned_cols=19 Identities=58% Similarity=1.338 Sum_probs=13.2
Q ss_pred CCCCCCC--CCCcccceeeeC
Q 045619 1 TTSWAEG--TDCCSWDGVTCD 19 (615)
Q Consensus 1 ~~~~~~~--~~~~~~~~~~~~ 19 (615)
+.+|+.. .++|+|.||+|.
T Consensus 23 l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 23 LSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp CTT--TT--S-CCCSTTEEE-
T ss_pred cccCCCcCCCCCeeeccEEeC
Confidence 4689986 899999999994
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.60 E-value=0.11 Score=28.66 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=11.8
Q ss_pred CCCCEEeCCCCcccccchhhh
Q 045619 546 TALESLDLSSNKLHGRILEQL 566 (615)
Q Consensus 546 ~~L~~L~l~~n~~~~~~~~~~ 566 (615)
++|++|+|++|+++......+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 567777777777665544443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.80 E-value=0.14 Score=25.54 Aligned_cols=10 Identities=60% Similarity=0.939 Sum_probs=3.3
Q ss_pred CCEEeCCCCc
Q 045619 548 LESLDLSSNK 557 (615)
Q Consensus 548 L~~L~l~~n~ 557 (615)
|+.|+|++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3444444443
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.78 E-value=0.3 Score=27.43 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=10.2
Q ss_pred CCCCEEeCCCCcccccchhh
Q 045619 546 TALESLDLSSNKLHGRILEQ 565 (615)
Q Consensus 546 ~~L~~L~l~~n~~~~~~~~~ 565 (615)
++|++|+|++|++....+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45555555555555443333
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.78 E-value=0.3 Score=27.43 Aligned_cols=20 Identities=35% Similarity=0.361 Sum_probs=10.2
Q ss_pred CCCCEEeCCCCcccccchhh
Q 045619 546 TALESLDLSSNKLHGRILEQ 565 (615)
Q Consensus 546 ~~L~~L~l~~n~~~~~~~~~ 565 (615)
++|++|+|++|++....+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45555555555555443333
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.68 E-value=0.0054 Score=63.40 Aligned_cols=87 Identities=20% Similarity=0.178 Sum_probs=41.7
Q ss_pred CcEEecCCCcCc-cccCcchhhccCCCCCCEEecccccCCCCCchhhhccc----ccccEEEcCCCCCccC----CCccc
Q 045619 98 LTHLDLFDCDMT-IEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLS----STITVLDLSGTGMRGN----FPREI 168 (615)
Q Consensus 98 L~~L~L~~~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~----~~L~~L~l~~~~~~~~----~~~~l 168 (615)
+.++.+.+|.+. .....+...+...+.|+.|++++|.+.......+.+.. ..+++|++..|.+... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 444555555443 11122334444555555555555555533333222211 3345556666665533 22334
Q ss_pred cCCCCCcEEEcccCCC
Q 045619 169 FQLPHLQELHLSSNKY 184 (615)
Q Consensus 169 ~~l~~L~~L~l~~~~~ 184 (615)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4466677777777654
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.43 E-value=0.04 Score=49.54 Aligned_cols=84 Identities=14% Similarity=0.047 Sum_probs=58.6
Q ss_pred CCcEEEEecCCCCceeecCCcccccccccccccccccccCCCCChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEE
Q 045619 22 TGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHL 101 (615)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 101 (615)
..++++||++.+...... . .++-+.++..++++...+..+|+++.....++.+++.+|..+ ..|.++++.++++++
T Consensus 41 ~kr~tvld~~s~r~vn~~-~--n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLG-K--NFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHHhhc-c--chHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 457888888887663211 1 455566677777777777777777777777777777777776 667777777888877
Q ss_pred ecCCCcCc
Q 045619 102 DLFDCDMT 109 (615)
Q Consensus 102 ~L~~~~~~ 109 (615)
++.++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77777543
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.99 E-value=0.99 Score=25.25 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=9.9
Q ss_pred CCCceeeCCCCccCCC
Q 045619 72 KELTYLNLSYTRFSGL 87 (615)
Q Consensus 72 ~~L~~L~L~~~~~~~~ 87 (615)
++|++|+|++|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666643
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.99 E-value=0.99 Score=25.25 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=9.9
Q ss_pred CCCceeeCCCCccCCC
Q 045619 72 KELTYLNLSYTRFSGL 87 (615)
Q Consensus 72 ~~L~~L~L~~~~~~~~ 87 (615)
++|++|+|++|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566666666666643
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.09 E-value=0.051 Score=48.91 Aligned_cols=83 Identities=12% Similarity=0.114 Sum_probs=44.3
Q ss_pred ccccccccccccccCCCCChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCC
Q 045619 47 HLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLS 126 (615)
Q Consensus 47 ~~~~L~~L~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~ 126 (615)
.+.+..+|+++......+-..|+.+..+..||++.|.+. .+|..++....++++++..|.. ...|.++...++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~----~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH----SQQPKSQKKEPHPK 114 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch----hhCCccccccCCcc
Confidence 344444555555444444445555555556666655555 5555565555566666555544 34455555555555
Q ss_pred EEeccccc
Q 045619 127 VLNLGWAD 134 (615)
Q Consensus 127 ~L~l~~~~ 134 (615)
.+++..+.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 55554443
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=76.52 E-value=11 Score=38.30 Aligned_cols=140 Identities=16% Similarity=0.002 Sum_probs=66.7
Q ss_pred ccceeeccccccCCCCCCChhccc--cCCcEEEccCCccc-ccCchh-hhcCCCcccEEEcCCCccc--------CCCCc
Q 045619 308 SLEYLSLSHNNLNGTIPPCLGNFS--TQLTILHLNNNKLQ-GRIPDA-FANGSCSLRSLDLNSNKLE--------GPFPR 375 (615)
Q Consensus 308 ~L~~L~l~~~~l~~~~~~~~~~~~--~~L~~L~L~~~~i~-~~~~~~-~~~~~~~L~~L~l~~~~i~--------~~~~~ 375 (615)
.+.+++++.|...+.+|..+.... .-++.++.+...+. +..... ++..-++++..+++.|... +...+
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 456667777666555554332221 13555555554432 111111 1222245666666655422 12223
Q ss_pred ccCCCCCccEEEcCCCcCCccCcccc-CC-----CCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCch
Q 045619 376 YLADCDELEVVNVGNNMIGDTFPSWL-GC-----LPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPR 449 (615)
Q Consensus 376 ~~~~l~~L~~L~l~~n~i~~~~~~~~-~~-----l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 449 (615)
.|..-+++ .|++.++..-.+-+..+ -. -+.=-++++..|........... ..-.+++.|++++|.+.+....
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleac-i~g~R~q~l~~rdnnldgeg~~ 372 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEAC-IFGQRVQVLLQRDNNLDGEGGA 372 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhcc-ccceeeeEeecccccccccccc
Confidence 34444566 77777765543322211 10 01112445555655443333222 2234589999999988765543
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.32 E-value=2.4 Score=24.34 Aligned_cols=18 Identities=44% Similarity=0.482 Sum_probs=11.5
Q ss_pred CCCCEEeCCCCcccccch
Q 045619 546 TALESLDLSSNKLHGRIL 563 (615)
Q Consensus 546 ~~L~~L~l~~n~~~~~~~ 563 (615)
++|++|+|++|.+.....
T Consensus 2 ~~L~~LdL~~N~i~~~G~ 19 (28)
T smart00368 2 PSLRELDLSNNKLGDEGA 19 (28)
T ss_pred CccCEEECCCCCCCHHHH
Confidence 467777777777764333
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.99 E-value=6.1 Score=40.02 Aligned_cols=61 Identities=25% Similarity=0.216 Sum_probs=36.3
Q ss_pred CCcEEeCcCCcCcccCC---ccccCCCCCCEEeCCCCcccc----cchhhhhhcCcCCeEEcccccce
Q 045619 523 SLIVLNLSHNGLTGSIP---VSFANMTALESLDLSSNKLHG----RILEQLLSVTALASLNLSYNRLW 583 (615)
Q Consensus 523 ~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~i~ 583 (615)
-+.++.++.|+.+.... .....-+.+++|++++|.... .+|+.++.-..++.+..+.|.+.
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 46677777777764322 223445778888888886543 34444444456666666666543
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.31 E-value=3.6 Score=23.15 Aligned_cols=14 Identities=64% Similarity=0.845 Sum_probs=8.0
Q ss_pred CCCCEEeCCCCccc
Q 045619 546 TALESLDLSSNKLH 559 (615)
Q Consensus 546 ~~L~~L~l~~n~~~ 559 (615)
++|+.|++++|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666554
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=62.25 E-value=6.6 Score=21.90 Aligned_cols=12 Identities=42% Similarity=0.501 Sum_probs=7.5
Q ss_pred CCCCEEeCCCCc
Q 045619 546 TALESLDLSSNK 557 (615)
Q Consensus 546 ~~L~~L~l~~n~ 557 (615)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 556666666663
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=58.10 E-value=7.5 Score=21.86 Aligned_cols=13 Identities=62% Similarity=0.629 Sum_probs=6.4
Q ss_pred CCcEEeCcCCcCc
Q 045619 523 SLIVLNLSHNGLT 535 (615)
Q Consensus 523 ~L~~L~L~~n~l~ 535 (615)
+|++|+.++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444555555544
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.62 E-value=6 Score=40.91 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=20.2
Q ss_pred cCCCcCcEEEccCCcccCcCC-----CCCCCCcEEEcCCC
Q 045619 238 QGWKSLTYLDISNNFLTQIEQ-----HPWKNITVLNLRNN 272 (615)
Q Consensus 238 ~~l~~L~~L~l~~~~~~~~~~-----~~~~~L~~L~l~~~ 272 (615)
.+.+.+..++|++|++..++. ...|+|+.|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 445566666666666555543 34456666666665
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.99 E-value=12 Score=38.88 Aligned_cols=66 Identities=23% Similarity=0.234 Sum_probs=38.3
Q ss_pred HhhccccceEeCCCCccCcc--CCccccCCCCCcEEeCcCC--cCcccCC-ccccCCCCCCEEeCCCCcccc
Q 045619 494 KRIITILTTIDLSSNQFQAE--IPRVLGDFKSLIVLNLSHN--GLTGSIP-VSFANMTALESLDLSSNKLHG 560 (615)
Q Consensus 494 ~~~~~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~L~~n--~l~~~~~-~~~~~l~~L~~L~l~~n~~~~ 560 (615)
....+.+..+.+++|++... +...-+.-|.|+.|+|++| .+...-. ..+. ..-|+.|.+.+|.+..
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLCT 284 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCcccc
Confidence 34567788888888887632 1112234467888888888 3331110 1122 2457788888887754
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.17 E-value=27 Score=43.94 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=28.7
Q ss_pred eCcCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 045619 528 NLSHNGLTGSIPVSFANMTALESLDLSSNKLHG 560 (615)
Q Consensus 528 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 560 (615)
+|++|+|+..-+..|..+++|+.|+|++|.+.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 588999996667789999999999999998865
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.61 E-value=70 Score=40.66 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=29.3
Q ss_pred eCCCCccCccCCccccCCCCCcEEeCcCCcCc
Q 045619 504 DLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLT 535 (615)
Q Consensus 504 ~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~ 535 (615)
||++|+|..+.+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999888889999999999999999876
Done!