Query 045619
Match_columns 615
No_of_seqs 266 out of 3575
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 06:11:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.1E-66 3.7E-71 578.2 40.3 601 1-615 30-749 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.6E-52 1.9E-56 460.3 38.9 553 22-587 99-744 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-51 1.2E-55 450.2 44.6 548 21-587 23-626 (680)
4 3t6q_A CD180 antigen; protein- 100.0 1.7E-49 5.9E-54 431.0 37.4 485 73-610 34-564 (606)
5 3t6q_A CD180 antigen; protein- 100.0 6.2E-48 2.1E-52 418.7 42.3 516 21-587 31-564 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-47 1.2E-51 418.3 45.6 512 23-561 49-624 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 4.2E-47 1.4E-51 412.2 32.2 522 26-611 14-563 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-45 4.7E-50 400.3 35.8 507 21-588 30-563 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-45 4.6E-50 413.3 34.8 514 49-612 24-566 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 9.8E-44 3.3E-48 398.3 34.1 506 21-587 22-564 (844)
11 4eco_A Uncharacterized protein 100.0 2.5E-44 8.6E-49 389.8 25.5 503 2-610 58-630 (636)
12 2z63_A TOLL-like receptor 4, v 100.0 1E-43 3.6E-48 382.9 29.4 508 22-610 27-560 (570)
13 2z63_A TOLL-like receptor 4, v 100.0 3.9E-43 1.3E-47 378.5 31.9 480 72-611 28-536 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-42 5.7E-47 371.6 32.4 456 72-588 26-515 (549)
15 4ecn_A Leucine-rich repeat pro 100.0 2.4E-41 8.2E-46 371.8 34.4 75 506-583 790-864 (876)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2E-41 6.8E-46 363.2 32.3 454 50-563 27-514 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-39 3.9E-44 356.4 32.4 487 67-611 71-585 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-40 9.8E-45 351.5 26.7 445 26-560 3-482 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 7.9E-40 2.7E-44 348.1 21.9 453 52-587 3-485 (520)
20 4eco_A Uncharacterized protein 100.0 6.4E-40 2.2E-44 355.2 19.6 465 72-609 81-603 (636)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.7E-39 3.3E-43 342.5 22.3 443 26-560 34-511 (562)
22 4ecn_A Leucine-rich repeat pro 100.0 6.8E-37 2.3E-41 336.5 30.2 327 212-610 511-870 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.9E-36 3E-40 319.5 26.0 431 22-536 51-511 (562)
24 1jl5_A Outer protein YOPM; leu 100.0 1.5E-35 5.2E-40 306.9 24.0 280 71-394 10-290 (454)
25 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-33 4.1E-38 308.6 35.2 524 21-600 50-623 (635)
26 1jl5_A Outer protein YOPM; leu 100.0 1.2E-33 4.2E-38 292.6 28.7 408 48-589 10-435 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 1.3E-33 4.6E-38 295.0 29.2 348 196-588 30-413 (455)
28 3v47_A TOLL-like receptor 5B a 100.0 2E-33 6.9E-38 293.7 29.1 372 23-448 30-412 (455)
29 2id5_A Lingo-1, leucine rich r 100.0 3.3E-32 1.1E-36 286.0 24.8 342 219-611 14-361 (477)
30 1o6v_A Internalin A; bacterial 100.0 4.9E-31 1.7E-35 275.7 31.7 343 47-445 44-389 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-31 5.2E-36 277.1 26.9 353 135-589 30-393 (457)
32 1o6v_A Internalin A; bacterial 100.0 7.1E-31 2.4E-35 274.5 31.5 341 148-584 46-389 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 4.5E-31 1.5E-35 273.6 27.0 269 65-398 35-303 (457)
34 3o6n_A APL1; leucine-rich repe 100.0 6.5E-31 2.2E-35 268.5 26.2 347 1-418 3-352 (390)
35 2id5_A Lingo-1, leucine rich r 100.0 5.8E-31 2E-35 276.5 20.1 321 244-611 14-338 (477)
36 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-30 6.1E-35 256.1 19.1 260 283-615 50-313 (313)
37 4fmz_A Internalin; leucine ric 100.0 4.7E-29 1.6E-33 250.7 28.6 219 303-583 128-346 (347)
38 3oja_B Anopheles plasmodium-re 100.0 6.6E-29 2.2E-33 267.5 29.8 307 47-393 49-357 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 3.5E-29 1.2E-33 255.7 25.3 330 215-611 44-379 (390)
40 1ogq_A PGIP-2, polygalacturona 100.0 4E-30 1.4E-34 253.6 16.8 266 1-273 24-302 (313)
41 4fmz_A Internalin; leucine ric 100.0 1.3E-28 4.4E-33 247.5 26.6 303 214-604 42-344 (347)
42 3oja_B Anopheles plasmodium-re 100.0 1.3E-28 4.3E-33 265.3 24.0 328 216-610 51-384 (597)
43 1z7x_W Ribonuclease inhibitor; 100.0 3.3E-31 1.1E-35 277.5 -1.8 112 72-183 3-124 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 7.7E-27 2.6E-31 232.7 26.6 285 242-581 34-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 4.5E-27 1.6E-31 234.2 24.1 267 242-583 32-306 (330)
46 1xku_A Decorin; proteoglycan, 100.0 2.4E-26 8.1E-31 229.0 28.0 291 215-581 30-330 (330)
47 2ft3_A Biglycan; proteoglycan, 99.9 4.3E-27 1.5E-31 234.5 20.3 286 263-603 34-330 (332)
48 1z7x_W Ribonuclease inhibitor; 99.9 9E-30 3.1E-34 266.5 -0.8 372 172-583 3-440 (461)
49 2z66_A Variable lymphocyte rec 99.9 5.2E-25 1.8E-29 216.9 20.4 262 283-591 28-295 (306)
50 3zyi_A Leucine-rich repeat-con 99.9 8E-25 2.7E-29 227.7 22.0 228 333-583 76-303 (452)
51 3ogk_B Coronatine-insensitive 99.9 1.4E-27 4.9E-32 258.1 1.1 399 121-580 110-548 (592)
52 3zyj_A Leucine-rich repeat-con 99.9 8.4E-25 2.9E-29 226.7 21.6 248 286-584 46-293 (440)
53 2z80_A TOLL-like receptor 2, v 99.9 6.1E-25 2.1E-29 220.9 18.7 178 241-443 31-210 (353)
54 1ozn_A Reticulon 4 receptor; N 99.9 7.3E-25 2.5E-29 213.4 18.1 235 307-589 32-267 (285)
55 2z66_A Variable lymphocyte rec 99.9 1.2E-24 4E-29 214.4 17.9 275 286-611 10-292 (306)
56 3zyi_A Leucine-rich repeat-con 99.9 7.9E-24 2.7E-28 220.2 24.0 230 282-560 74-304 (452)
57 3zyj_A Leucine-rich repeat-con 99.9 9.5E-24 3.3E-28 218.8 23.4 230 282-560 63-293 (440)
58 2z80_A TOLL-like receptor 2, v 99.9 2.1E-24 7.2E-29 217.0 15.7 279 214-563 29-318 (353)
59 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-23 4.3E-28 204.6 20.0 252 282-581 31-285 (285)
60 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-22 4.1E-27 216.4 29.2 270 217-572 41-310 (622)
61 4fcg_A Uncharacterized protein 99.9 4.5E-24 1.5E-28 211.5 16.9 240 5-255 55-315 (328)
62 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-22 4.1E-27 216.4 28.2 263 241-588 40-302 (622)
63 4fcg_A Uncharacterized protein 99.9 1.3E-23 4.3E-28 208.3 19.3 226 306-583 80-314 (328)
64 2p1m_B Transport inhibitor res 99.9 2.7E-27 9.2E-32 256.1 -8.5 87 497-583 455-544 (594)
65 3ogk_B Coronatine-insensitive 99.9 9.8E-26 3.3E-30 243.7 1.8 416 22-441 72-548 (592)
66 2p1m_B Transport inhibitor res 99.9 1.9E-26 6.5E-31 249.4 -4.5 429 75-584 46-520 (594)
67 1wwl_A Monocyte differentiatio 99.9 3.1E-25 1E-29 218.7 3.4 206 333-584 96-310 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-24 6.4E-29 213.6 8.3 264 265-588 13-281 (317)
69 1wwl_A Monocyte differentiatio 99.9 1.2E-22 4.2E-27 200.1 12.2 204 44-254 38-266 (312)
70 3oja_A Leucine-rich immune mol 99.9 5.4E-23 1.8E-27 214.9 9.9 237 282-578 33-270 (487)
71 3oja_A Leucine-rich immune mol 99.9 4.4E-23 1.5E-27 215.6 9.1 247 305-611 32-287 (487)
72 2o6q_A Variable lymphocyte rec 99.9 3.9E-21 1.3E-25 185.2 21.3 202 308-559 17-218 (270)
73 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-22 8.3E-27 198.4 13.1 257 285-601 12-270 (317)
74 2z62_A TOLL-like receptor 4, v 99.9 2.5E-21 8.6E-26 187.4 19.8 217 322-588 21-242 (276)
75 2o6q_A Variable lymphocyte rec 99.9 6.4E-21 2.2E-25 183.7 21.2 207 332-587 16-222 (270)
76 1p9a_G Platelet glycoprotein I 99.9 2.8E-21 9.4E-26 187.7 18.5 111 498-609 100-211 (290)
77 2z62_A TOLL-like receptor 4, v 99.9 2.2E-21 7.5E-26 187.8 16.7 224 337-610 12-241 (276)
78 1p9a_G Platelet glycoprotein I 99.8 7.8E-20 2.7E-24 177.5 19.1 204 303-560 6-209 (290)
79 4glp_A Monocyte differentiatio 99.8 1.3E-20 4.3E-25 185.6 11.4 207 333-584 92-308 (310)
80 3rfs_A Internalin B, repeat mo 99.8 1.4E-19 4.8E-24 174.4 18.3 201 333-590 42-242 (272)
81 3goz_A Leucine-rich repeat-con 99.8 1.7E-21 5.6E-26 196.3 4.8 259 267-563 3-301 (362)
82 2ast_B S-phase kinase-associat 99.8 8.4E-21 2.9E-25 189.5 7.9 254 285-591 49-314 (336)
83 2ca6_A RAN GTPase-activating p 99.8 7E-22 2.4E-26 201.1 -0.1 90 497-586 215-319 (386)
84 3rfs_A Internalin B, repeat mo 99.8 1.5E-19 5.1E-24 174.2 16.1 204 333-588 20-223 (272)
85 2xwt_C Thyrotropin receptor; s 99.8 1.6E-19 5.5E-24 170.5 14.1 86 333-419 32-119 (239)
86 3m19_A Variable lymphocyte rec 99.8 8.7E-19 3E-23 166.7 19.3 180 333-561 15-194 (251)
87 2xwt_C Thyrotropin receptor; s 99.8 6.9E-20 2.3E-24 173.1 11.1 199 357-605 31-238 (239)
88 3m19_A Variable lymphocyte rec 99.8 1.9E-18 6.5E-23 164.3 20.7 180 358-585 15-194 (251)
89 1h6u_A Internalin H; cell adhe 99.8 1.4E-18 4.7E-23 170.5 19.5 190 333-584 42-231 (308)
90 2ca6_A RAN GTPase-activating p 99.8 5.6E-21 1.9E-25 194.5 -0.2 177 60-253 20-228 (386)
91 3goz_A Leucine-rich repeat-con 99.8 2.9E-20 9.8E-25 187.2 4.4 260 287-585 2-299 (362)
92 4glp_A Monocyte differentiatio 99.8 1.6E-19 5.3E-24 177.7 9.0 228 333-605 65-306 (310)
93 2ast_B S-phase kinase-associat 99.8 2.9E-19 1E-23 178.3 7.1 225 308-580 48-282 (336)
94 1h6u_A Internalin H; cell adhe 99.8 1.3E-17 4.4E-22 163.6 18.4 191 69-276 38-231 (308)
95 4ay9_X Follicle-stimulating ho 99.8 2.5E-18 8.7E-23 172.0 13.6 104 311-419 13-118 (350)
96 4ay9_X Follicle-stimulating ho 99.7 3.2E-17 1.1E-21 164.0 16.3 244 265-558 12-258 (350)
97 2o6s_A Variable lymphocyte rec 99.7 4.8E-17 1.6E-21 149.9 13.4 86 497-589 99-184 (208)
98 1h6t_A Internalin B; cell adhe 99.7 1.6E-16 5.4E-21 154.3 17.2 80 498-583 134-213 (291)
99 2v70_A SLIT-2, SLIT homolog 2 99.7 3.2E-17 1.1E-21 152.1 10.9 64 497-560 104-167 (220)
100 3cvr_A Invasion plasmid antige 99.7 2.3E-16 7.9E-21 165.9 18.7 189 308-571 60-255 (571)
101 3cvr_A Invasion plasmid antige 99.7 1.7E-16 5.8E-21 166.9 16.7 183 333-589 60-249 (571)
102 2xot_A Amphoterin-induced prot 99.7 3.1E-16 1.1E-20 157.4 15.9 59 359-417 41-100 (361)
103 2o6s_A Variable lymphocyte rec 99.7 3.8E-16 1.3E-20 143.9 14.3 158 282-450 27-184 (208)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 2.3E-16 7.8E-21 146.4 12.5 182 384-612 14-195 (220)
105 2v9t_B SLIT homolog 2 protein 99.7 8.5E-16 2.9E-20 142.5 15.8 64 497-560 103-166 (220)
106 3e6j_A Variable lymphocyte rec 99.7 1.3E-15 4.5E-20 142.2 16.2 155 358-561 20-174 (229)
107 2xot_A Amphoterin-induced prot 99.7 1.9E-16 6.5E-21 159.0 11.2 179 358-584 19-203 (361)
108 3e6j_A Variable lymphocyte rec 99.7 1.7E-15 5.7E-20 141.5 15.8 163 2-209 10-172 (229)
109 1m9s_A Internalin B; cell inva 99.7 1.2E-15 4.1E-20 162.4 16.6 101 333-444 44-144 (605)
110 1h6t_A Internalin B; cell adhe 99.6 1.3E-15 4.4E-20 147.9 14.5 173 68-257 42-216 (291)
111 4ezg_A Putative uncharacterize 99.6 5.6E-16 1.9E-20 141.3 11.2 84 497-584 111-195 (197)
112 1xeu_A Internalin C; cellular 99.6 7.7E-16 2.6E-20 147.0 10.3 168 333-561 20-187 (263)
113 2v9t_B SLIT homolog 2 protein 99.6 6.2E-15 2.1E-19 136.6 15.6 113 333-448 57-169 (220)
114 1m9s_A Internalin B; cell inva 99.6 1.3E-14 4.4E-19 154.5 17.7 182 68-266 39-222 (605)
115 3sb4_A Hypothetical leucine ri 99.6 2.1E-15 7.3E-20 149.4 9.3 263 306-598 48-326 (329)
116 1w8a_A SLIT protein; signaling 99.6 2.6E-15 8.8E-20 136.1 8.8 131 384-561 11-141 (192)
117 1xeu_A Internalin C; cellular 99.6 3.6E-15 1.2E-19 142.3 9.1 170 305-536 17-186 (263)
118 4ezg_A Putative uncharacterize 99.6 1.5E-14 5.1E-19 131.7 12.0 152 68-229 40-194 (197)
119 1w8a_A SLIT protein; signaling 99.6 1.1E-14 3.9E-19 131.7 10.7 157 434-611 11-167 (192)
120 2wfh_A SLIT homolog 2 protein 99.5 1.8E-14 6.1E-19 130.4 11.0 113 498-611 31-144 (193)
121 3sb4_A Hypothetical leucine ri 99.5 3.3E-14 1.1E-18 140.8 10.1 222 332-577 101-328 (329)
122 1dce_A Protein (RAB geranylger 99.5 2.1E-16 7.2E-21 167.2 -7.7 90 497-589 462-552 (567)
123 2ell_A Acidic leucine-rich nuc 99.5 1.8E-13 6E-18 121.2 12.1 84 500-583 73-160 (168)
124 1dce_A Protein (RAB geranylger 99.5 7.3E-16 2.5E-20 163.1 -4.8 204 304-577 346-567 (567)
125 2je0_A Acidic leucine-rich nuc 99.5 2.3E-13 8E-18 117.7 11.1 64 515-578 81-148 (149)
126 4fdw_A Leucine rich hypothetic 99.5 2.6E-12 8.8E-17 129.9 19.8 230 301-582 152-382 (401)
127 2o6r_A Variable lymphocyte rec 99.4 4.7E-13 1.6E-17 119.5 11.0 113 498-610 28-141 (177)
128 4b8c_D Glucose-repressible alc 99.4 1.2E-13 4.2E-18 150.8 7.6 144 396-588 215-359 (727)
129 2ell_A Acidic leucine-rich nuc 99.4 5.5E-13 1.9E-17 117.9 10.4 132 22-184 23-159 (168)
130 2wfh_A SLIT homolog 2 protein 99.4 2.9E-12 9.9E-17 115.8 14.8 138 310-455 13-150 (193)
131 2o6r_A Variable lymphocyte rec 99.4 1.3E-12 4.5E-17 116.6 12.2 63 498-560 76-138 (177)
132 4fdw_A Leucine rich hypothetic 99.4 3.1E-12 1E-16 129.3 16.0 243 306-584 112-359 (401)
133 4fs7_A Uncharacterized protein 99.4 1.5E-11 5.1E-16 124.9 21.1 215 301-575 179-393 (394)
134 2je0_A Acidic leucine-rich nuc 99.4 4.9E-13 1.7E-17 115.7 8.0 111 64-180 34-148 (149)
135 1a9n_A U2A', U2A'; complex (nu 99.4 2E-12 6.8E-17 115.2 10.6 82 500-583 66-153 (176)
136 4b8c_D Glucose-repressible alc 99.4 1.4E-13 4.8E-18 150.3 3.4 115 299-419 216-330 (727)
137 4fs7_A Uncharacterized protein 99.4 5.9E-11 2E-15 120.5 22.4 61 66-131 65-125 (394)
138 3g39_A Variable lymphocyte rec 99.3 3.9E-12 1.3E-16 112.4 9.7 90 498-587 30-119 (170)
139 3g39_A Variable lymphocyte rec 99.3 6.5E-12 2.2E-16 110.9 10.0 108 500-610 11-119 (170)
140 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 109.7 9.9 88 498-585 33-120 (174)
141 2r9u_A Variable lymphocyte rec 99.3 1.6E-11 5.6E-16 108.7 10.0 108 500-610 14-122 (174)
142 1ds9_A Outer arm dynein; leuci 99.2 1.1E-13 3.7E-18 126.1 -5.5 83 497-583 92-185 (198)
143 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-11 5.1E-16 109.5 8.1 102 73-182 43-150 (176)
144 3un9_A NLR family member X1; l 99.2 9.7E-13 3.3E-17 131.7 -0.8 174 357-569 72-262 (372)
145 3un9_A NLR family member X1; l 99.2 3.9E-13 1.3E-17 134.6 -3.7 190 332-560 72-284 (372)
146 1ds9_A Outer arm dynein; leuci 99.1 1.6E-12 5.4E-17 118.3 -4.0 109 65-182 41-150 (198)
147 4gt6_A Cell surface protein; l 99.1 7.7E-09 2.6E-13 104.8 22.7 105 492-601 282-386 (394)
148 4gt6_A Cell surface protein; l 99.1 2E-08 6.9E-13 101.7 25.1 134 299-443 257-390 (394)
149 2ifg_A High affinity nerve gro 99.1 1.6E-10 5.6E-15 115.2 9.2 108 502-611 12-121 (347)
150 4h09_A Hypothetical leucine ri 98.9 3.3E-07 1.1E-11 92.3 22.9 74 495-570 283-356 (379)
151 2ifg_A High affinity nerve gro 98.8 4E-09 1.4E-13 105.0 7.9 87 497-584 30-117 (347)
152 4h09_A Hypothetical leucine ri 98.8 4.6E-07 1.6E-11 91.3 21.0 88 491-580 256-343 (379)
153 2ra8_A Uncharacterized protein 98.7 5.2E-09 1.8E-13 103.6 3.6 83 497-581 251-341 (362)
154 2ra8_A Uncharacterized protein 98.6 3.8E-08 1.3E-12 97.4 7.5 159 354-557 169-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 5.7E-08 1.9E-12 86.7 4.7 86 498-583 65-164 (185)
156 3e4g_A ATP synthase subunit S, 98.4 5.5E-08 1.9E-12 84.3 2.4 86 498-583 61-152 (176)
157 1io0_A Tropomodulin; LRR prote 98.3 1.3E-07 4.5E-12 84.3 0.9 118 67-184 31-163 (185)
158 3rw6_A Nuclear RNA export fact 98.1 4.3E-06 1.5E-10 78.3 7.4 79 496-576 168-257 (267)
159 3rw6_A Nuclear RNA export fact 98.1 6.8E-07 2.3E-11 83.7 1.8 90 497-588 140-238 (267)
160 3e4g_A ATP synthase subunit S, 98.1 1.3E-06 4.4E-11 75.6 2.9 44 64-107 53-96 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00016 5.5E-09 63.8 5.2 87 497-583 69-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00025 8.4E-09 62.6 2.5 90 69-158 38-136 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0015 5E-08 53.8 6.0 58 501-560 11-69 (130)
164 3rfe_A Platelet glycoprotein I 96.0 0.013 4.5E-07 48.0 6.7 56 526-583 12-68 (130)
165 2lz0_A Uncharacterized protein 76.9 4.3 0.00015 30.9 5.3 49 507-556 5-53 (100)
166 2lz0_A Uncharacterized protein 69.9 5.8 0.0002 30.2 4.5 47 368-415 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-66 Score=578.18 Aligned_cols=601 Identities=29% Similarity=0.384 Sum_probs=358.6
Q ss_pred CCCCCCCCCCcccceeeeCCCCCcEEEEecCCCCceee---cCCcccccccccccccccccccCCCCChhhhcCCCCcee
Q 045619 1 TTSWAEGTDCCSWDGVTCDNVTGNVIGLDLHCSMLEGT---IDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYL 77 (615)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---~~~~~~~~~~~~L~~L~~~~~~~~~l~~~l~~l~~L~~L 77 (615)
+++|..+++||+|+|++|. .++|++|+|+++.+.|. +++ .+.++++|+.++.+......+|+.+..+++|++|
T Consensus 30 l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~--~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L 105 (768)
T 3rgz_A 30 LPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSS--SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSL 105 (768)
T ss_dssp STTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHH--HTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEE
T ss_pred ccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccCh--hHhccCcccccCCcCCCcCCCchhhccCCCCCEE
Confidence 4789999999999999998 58999999999999887 553 5555555555555544444444556666666666
Q ss_pred eCCCCccCCCCch--hhhcCCCCcEEecCCCcCccccCcchhhc-cCCCCCCEEecccccCCCCCchh---hhcc-----
Q 045619 78 NLSYTRFSGLLPQ--EISHMSKLTHLDLFDCDMTIEQKSFDLLA-SNLTKLSVLNLGWADRSLIEPFS---VLNL----- 146 (615)
Q Consensus 78 ~L~~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~---~~~l----- 146 (615)
+|++|.+.+..|. .++++++|++|++++|.+. ...|..+ .++++|++|++++|.+....+.. +..+
T Consensus 106 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~ 182 (768)
T 3rgz_A 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD---FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182 (768)
T ss_dssp ECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE---CCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCE
T ss_pred ECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC---CcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCE
Confidence 6666665555555 5556666666666665544 2223222 44444555555444444333322 2222
Q ss_pred ----------------cccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCccc
Q 045619 147 ----------------SSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTG 210 (615)
Q Consensus 147 ----------------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 210 (615)
+++|++|++++|.+.+..+. ++.+++|++|++++|.+.......+..+++|++|++++|.+.+
T Consensus 183 L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 261 (768)
T 3rgz_A 183 LAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261 (768)
T ss_dssp EECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE
T ss_pred EECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccC
Confidence 13444444444444332222 3444444444444443222111222233333333333333322
Q ss_pred c--ccCC-------------------------CCcCEEecCCcccCcccccccccCCCcCcEEEccCCccc-CcCC---C
Q 045619 211 F--LRNS-------------------------EELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLT-QIEQ---H 259 (615)
Q Consensus 211 ~--~~~~-------------------------~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~---~ 259 (615)
. ...+ ++|++|++++|.+.+.++.. +..+++|++|++++|.+. .++. .
T Consensus 262 ~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~ 340 (768)
T 3rgz_A 262 PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLL 340 (768)
T ss_dssp SCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred ccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCCHHHHh
Confidence 1 0122 33333333333333222222 133334444444444333 2211 2
Q ss_pred CCCCCcEEEcCCCccccccCCC---C-CCceEEEccCCcccccCcccccC--CCccceeeccccccCCCCCCChhccccC
Q 045619 260 PWKNITVLNLRNNTIQGTILVP---P-PSTRAFLFSNNKLFGQIPPSICS--LSSLEYLSLSHNNLNGTIPPCLGNFSTQ 333 (615)
Q Consensus 260 ~~~~L~~L~l~~~~i~~~~~~~---~-~~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 333 (615)
.+++|++|++++|.+.+..+.. + ++|++|++++|.+.+..+..+.. +++|++|++++|.+.+.+|..+..+. +
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~ 419 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-E 419 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-T
T ss_pred cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-C
Confidence 3334444444444444333332 1 24444444444444444444433 44555555555555545555554443 5
Q ss_pred CcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEcc
Q 045619 334 LTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLR 413 (615)
Q Consensus 334 L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 413 (615)
|+.|++++|.+.+..|..+... ++|++|++++|.+.+..|..+..+++|++|++++|.+++..|.++..+++|++|+++
T Consensus 420 L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp CCEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCEEECcCCcccCcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 6666666666665555555444 566666666666666666666666667777777776666666666677777777777
Q ss_pred CCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccc-cccccc---------ccccee
Q 045619 414 SNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYM-QREEDY---------YQDSVT 483 (615)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~-~~~~~~---------~~~~~~ 483 (615)
+|++.+..+.. +..+++|+.|++++|.+.+.+|.. +..+++|+.++++++..... ...... ......
T Consensus 499 ~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 499 NNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp SSCCCSCCCGG--GGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred CCccCCcCChH--HhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 77666544332 355667777777777777666654 56677777777766643211 000000 000000
Q ss_pred ------------------------------------------EEecCchhhHHhhccccceEeCCCCccCccCCccccCC
Q 045619 484 ------------------------------------------VTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDF 521 (615)
Q Consensus 484 ------------------------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l 521 (615)
..........+..+++|+.||+++|++++..|..++.+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 00000000112346789999999999999999999999
Q ss_pred CCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCCCCCCCccCcccC
Q 045619 522 KSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFENDSYI 601 (615)
Q Consensus 522 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~ 601 (615)
++|++|+|++|++++.+|..|+.+++|++|||++|++++.+|..++++++|++|++++|++.|.||+.+++.+|...+|.
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~ 735 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGC
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccCCCCCCCC
Q 045619 602 GNIHLCGEPLTKTK 615 (615)
Q Consensus 602 ~~~~~~~~~~~~~~ 615 (615)
|||.+||.|+..|.
T Consensus 736 gN~~Lcg~~l~~C~ 749 (768)
T 3rgz_A 736 NNPGLCGYPLPRCD 749 (768)
T ss_dssp SCTEEESTTSCCCC
T ss_pred CCchhcCCCCcCCC
Confidence 99999999988663
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.6e-52 Score=460.27 Aligned_cols=553 Identities=28% Similarity=0.382 Sum_probs=413.6
Q ss_pred CCcEEEEecCCCCceeecCCcccccccccccccccccccCC-CCChhh-hcCCCCceeeCCCCccCCCCchh---hhcCC
Q 045619 22 TGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGS-QISPEF-LRLKELTYLNLSYTRFSGLLPQE---ISHMS 96 (615)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~-~l~~~l-~~l~~L~~L~L~~~~~~~~~~~~---l~~l~ 96 (615)
..++++|+|++|.+.|.++....+.++++|++|+++++... .+|..+ .++++|++|++++|.+++..|.. +.+++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 36899999999999988887668889999999888876543 234443 67888888888888877666655 56666
Q ss_pred CCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCccCCCccccCCCCCcE
Q 045619 97 KLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQE 176 (615)
Q Consensus 97 ~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 176 (615)
+|++|++++|.+. +..+ +..+++|++|++++|.+....+. +..+ ++|++|++++|.+.+..+..+..+++|++
T Consensus 179 ~L~~L~Ls~n~l~---~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 179 ELKHLAISGNKIS---GDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAISTCTELKL 251 (768)
T ss_dssp TCCEEECCSSEEE---SCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTC-CSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred CCCEEECCCCccc---ccCC--cccCCcCCEEECcCCcCCCCCcc-cccC-CCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence 6666666666554 2111 14455555555555555444333 4444 55555555555554444444455555555
Q ss_pred EEcccCCC----------------------ccccCCCCCC-CCCccEEECCCCCccc----cccCCCCcCEEecCCcccC
Q 045619 177 LHLSSNKY----------------------LTGYLPESNW-STSLRELDLSFSNFTG----FLRNSEELEFLDLSNNRIH 229 (615)
Q Consensus 177 L~l~~~~~----------------------~~~~~~~~~~-~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~~~~~ 229 (615)
|++++|.+ .......+.. .++|++|++++|.+.+ .+..+++|++|++++|.+.
T Consensus 252 L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 252 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp EECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred EECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc
Confidence 55544432 2122222223 3788888888887664 4778999999999999998
Q ss_pred cccccccccCCCcCcEEEccCCcccCcCCC---CCC-CCcEEEcCCCccccccCCC-----CCCceEEEccCCcccccCc
Q 045619 230 GRISKSDSQGWKSLTYLDISNNFLTQIEQH---PWK-NITVLNLRNNTIQGTILVP-----PPSTRAFLFSNNKLFGQIP 300 (615)
Q Consensus 230 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~-~L~~L~l~~~~i~~~~~~~-----~~~L~~L~l~~~~~~~~~~ 300 (615)
+.++...+..+++|++|++++|.++...+. .++ +|+.|++++|.+.+..+.. +++|++|++++|.+.+..|
T Consensus 332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 411 (768)
T 3rgz_A 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411 (768)
T ss_dssp EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence 888887679999999999999999854443 234 8999999999998766554 6789999999999999999
Q ss_pred ccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCC
Q 045619 301 PSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADC 380 (615)
Q Consensus 301 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l 380 (615)
..+..+++|+.|++++|.+.+..|..+..+. +|+.|++++|.+.+..|..+... ++|++|++++|.+++..|..+..+
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYV-KTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGC
T ss_pred HHHhcCCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCC-CCceEEEecCCcccCcCCHHHhcC
Confidence 9999999999999999999988898888875 89999999999998888887665 899999999999999999999999
Q ss_pred CCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcc
Q 045619 381 DELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKN 460 (615)
Q Consensus 381 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~ 460 (615)
++|++|++++|++++..|.++..+++|++|++++|++.+..+.. +..+++|+.|++++|.+.+.+|..++.... +..
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~~~ 566 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLFNGTIPAAMFKQSG-KIA 566 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG--GGGCTTCCEEECCSSEEESBCCGGGGTTTT-CBC
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH--HcCCCCCCEEECCCCccCCcCChHHhcccc-hhh
Confidence 99999999999999999999999999999999999998755543 478899999999999999999987654322 222
Q ss_pred cccCCCCC--------------------------------------------ccccc---cccccccce--eEEecCch-
Q 045619 461 VDEKGSDG--------------------------------------------LYMQR---EEDYYQDSV--TVTVKGRD- 490 (615)
Q Consensus 461 l~~~~~~~--------------------------------------------~~~~~---~~~~~~~~~--~~~~~~~~- 490 (615)
+....... ...+. ......... +.+.+.+.
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 21111000 00000 000011111 12222221
Q ss_pred --hhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhh
Q 045619 491 --VVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLS 568 (615)
Q Consensus 491 --~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 568 (615)
...+..++.|+.|++++|++++..|..++.+++|++|+|++|++++.+|..|..+++|++|++++|++++.+|.. ..
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~ 725 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQ 725 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SS
T ss_pred cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hh
Confidence 223456889999999999999999999999999999999999999999999999999999999999999999875 34
Q ss_pred cCcCCeEEcccccceecCC
Q 045619 569 VTALASLNLSYNRLWGRIP 587 (615)
Q Consensus 569 l~~L~~L~l~~n~i~~~~p 587 (615)
+.++....+.+|+....-|
T Consensus 726 ~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 726 FETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp GGGSCGGGGCSCTEEESTT
T ss_pred hccCCHHHhcCCchhcCCC
Confidence 5566777788887554333
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-51 Score=450.25 Aligned_cols=548 Identities=21% Similarity=0.218 Sum_probs=331.9
Q ss_pred CCCcEEEEecCCCCceeecCCcccccccccccccccccccCCCC-ChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCc
Q 045619 21 VTGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQI-SPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLT 99 (615)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l-~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 99 (615)
.+.++++|++++|.+++..+. ++.++++|++|++.+.....+ |..|.++++|++|++++|.++...+.+|.++++|+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred cCCCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 356899999999999876554 788999999999988776655 66799999999999999999966666799999999
Q ss_pred EEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCccCCCcccc--CCCCCcEE
Q 045619 100 HLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIF--QLPHLQEL 177 (615)
Q Consensus 100 ~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L 177 (615)
+|++++|.+. ...+..+.++++|++|++++|.+....+..+..+ ++|++|++++|.+.+..+..+. .+++|++|
T Consensus 101 ~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 101 ELHLMSNSIQ---KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp EEECCSSCCC---CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred EEECCCCccC---ccChhHccccCCCCEEECCCCcccccCchhhccc-ccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 9999999886 4445678999999999999999888877777777 9999999999998866555543 56899999
Q ss_pred EcccCCCccccCCCCCCCCC---------------------------ccEEECCCCCcccc----ccCCC--CcCEEecC
Q 045619 178 HLSSNKYLTGYLPESNWSTS---------------------------LRELDLSFSNFTGF----LRNSE--ELEFLDLS 224 (615)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~---------------------------L~~L~l~~~~~~~~----~~~~~--~L~~L~l~ 224 (615)
++++|.+.......+....+ |++|++++|.+.+. +..++ +|++|+++
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence 99999765543333334444 44555555544432 22222 25666666
Q ss_pred CcccCcccccccccCCCcCcEEEccCCcccCcCC---CCCCCCcEEEcCCCcccc------------ccCCCCCCceEEE
Q 045619 225 NNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLRNNTIQG------------TILVPPPSTRAFL 289 (615)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~i~~------------~~~~~~~~L~~L~ 289 (615)
+|.+. .++...+..+++|++|++++|.+....+ ..+++|+.|+++++...+ ..+..+++|++|+
T Consensus 257 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 257 YNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCcC-ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 65555 2333333555566666666665555443 234455566555543221 1222355666666
Q ss_pred ccCCcccccCcccccCCCccceeeccccccCC-CCCCC-hhcc-ccCCcEEEccCCcccccCchhhhcCCCcccEEEcCC
Q 045619 290 FSNNKLFGQIPPSICSLSSLEYLSLSHNNLNG-TIPPC-LGNF-STQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNS 366 (615)
Q Consensus 290 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-~~~~~-~~~~-~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~ 366 (615)
+++|.+.+..+..+..+++|++|++++|.+.. .++.. +... .++|+.|++++|.+.+..+..+... ++|++|++++
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~ 414 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL-GHLEVLDLGL 414 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC-TTCCEEECCS
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC-CCCCEEeCCC
Confidence 66666655555555666666666666554321 11211 1111 1246666666666654444444332 5666666666
Q ss_pred CcccCCCC-cccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcC
Q 045619 367 NKLEGPFP-RYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTG 445 (615)
Q Consensus 367 ~~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 445 (615)
|.+.+..+ ..|.++++|++|++++|.+++..+..|..+++|+.|++++|.+.........+..+++|+.|++++|.+.+
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 66554333 45556666666666666665555556666666666666666554332333334556666666666666653
Q ss_pred CCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCc
Q 045619 446 FLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLI 525 (615)
Q Consensus 446 ~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~ 525 (615)
++...+.++++|+.++++++........... ..+...+..+++|+.|++++|++....+..|+++++|+
T Consensus 495 -i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 495 -INDDMLEGLEKLEILDLQHNNLARLWKHANP----------GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCCGGGGSTTST----------TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred -CChhhhccccccCEEeCCCCCccccchhhcc----------CCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 3333355555666655555543222110000 00000123345566666666666544444556666666
Q ss_pred EEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhh-hcCcCCeEEcccccceecCC
Q 045619 526 VLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLL-SVTALASLNLSYNRLWGRIP 587 (615)
Q Consensus 526 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~i~~~~p 587 (615)
+|+|++|++++..+..|..+++|+.|++++|+++...+..+. .+++|+.+++++|++...-+
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 666666666544444455566666666666666655555555 45566666666666655443
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-49 Score=430.95 Aligned_cols=485 Identities=20% Similarity=0.219 Sum_probs=252.8
Q ss_pred CCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccE
Q 045619 73 ELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITV 152 (615)
Q Consensus 73 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~ 152 (615)
++++|++++|.+++..|.+|.++++|++|++++|.+. ...|..+.++++|++|++++|.+....+..+..+ ++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~ 109 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY---WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP-KALKH 109 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC-TTCCE
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccc---eeChhhccCccccCeeeCCCCcccccChhhhccc-ccccE
Confidence 4566666666665555555666666666666666554 3334555566666666666665555555555555 66666
Q ss_pred EEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCcccc----ccCCCCcC--EEecCCc
Q 045619 153 LDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGF----LRNSEELE--FLDLSNN 226 (615)
Q Consensus 153 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L~--~L~l~~~ 226 (615)
|++++|.+....+..+..+++|++|++++|.+.....+.+...++|++|++++|.+... +..+++|+ .|++++|
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 66666665544445555666666666666654443444444455666666666655432 44555555 5666666
Q ss_pred ccCcccccccccCCCcCcEEEccCCcc---------------------cCc-----CCCCC-----CCCcEEEcCCCccc
Q 045619 227 RIHGRISKSDSQGWKSLTYLDISNNFL---------------------TQI-----EQHPW-----KNITVLNLRNNTIQ 275 (615)
Q Consensus 227 ~~~~~~~~~~~~~l~~L~~L~l~~~~~---------------------~~~-----~~~~~-----~~L~~L~l~~~~i~ 275 (615)
.+.+ ++...+ ...+|++|++++|.. ... ....+ .+++.|++++|.+.
T Consensus 190 ~l~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 190 DIAG-IEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CCCE-ECTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred ccCc-cChhHh-hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 6552 222221 224556666555431 100 00000 14556666666555
Q ss_pred cccCC---CCCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhh
Q 045619 276 GTILV---PPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAF 352 (615)
Q Consensus 276 ~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~ 352 (615)
+.... .+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..+...
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSST
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhh
Confidence 44322 2556666666666555 4455555666666666666665533344444443 56666666665554444433
Q ss_pred hcCCCcccEEEcCCCcccCCC--CcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCC
Q 045619 353 ANGSCSLRSLDLNSNKLEGPF--PRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPF 430 (615)
Q Consensus 353 ~~~~~~L~~L~l~~~~i~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 430 (615)
...+++|++|++++|.+++.. +..+.++++|++|++++|.+++..+..+..+++|++|++++|++....+. ..+..+
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l 424 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ-SPFQNL 424 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC-CTTTTC
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc-hhhhCc
Confidence 333456666666666655433 44555666666666666666555555666666666666666655543222 123455
Q ss_pred CcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCcc
Q 045619 431 QALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQF 510 (615)
Q Consensus 431 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 510 (615)
++|+.|++++|.+.+..+. .+..+++ |++|++++|++
T Consensus 425 ~~L~~L~l~~n~l~~~~~~-~~~~l~~------------------------------------------L~~L~L~~n~l 461 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQ-LFDGLPA------------------------------------------LQHLNLQGNHF 461 (606)
T ss_dssp TTCCEEECTTCCCBTTCTT-TTTTCTT------------------------------------------CCEEECTTCBC
T ss_pred ccCCEEECCCCccCCcCHH-HHhCCCC------------------------------------------CCEEECCCCCC
Confidence 6666666666665543332 2344444 55555555544
Q ss_pred Ccc---CCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCC
Q 045619 511 QAE---IPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIP 587 (615)
Q Consensus 511 ~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p 587 (615)
.+. .+..+..+++|++|++++|++++..|..|..+++|+.|++++|++++..|..+.++++| +|++++|++.+..|
T Consensus 462 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp GGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred CccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 431 11334445555555555555544444445555555555555555554444455555555 55555555543333
Q ss_pred CC-CCCCCccCcccCCCcCccCCC
Q 045619 588 RG-NQFNTFENDSYIGNIHLCGEP 610 (615)
Q Consensus 588 ~~-~~~~~~~~~~~~~~~~~~~~~ 610 (615)
.. ..+++++.+.+.|||+.|+++
T Consensus 541 ~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 541 SLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhcccCCCCCEEeCCCCCccccCC
Confidence 32 123444555555555555443
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.2e-48 Score=418.72 Aligned_cols=516 Identities=18% Similarity=0.153 Sum_probs=414.2
Q ss_pred CCCcEEEEecCCCCceeecCCcccccccccccccccccccCCCC-ChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCc
Q 045619 21 VTGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQI-SPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLT 99 (615)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l-~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 99 (615)
.+..+++|++++|.+++..+. ++.++++|++|+++++.+..+ |+.|.++++|++|++++|.+.+..|.+|.++++|+
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred CCCcCcEEEccCCccCcCChh--HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 356899999999999887666 888999999999998876654 67899999999999999999988899999999999
Q ss_pred EEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCccCCCccccCCCCCc--EE
Q 045619 100 HLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQ--EL 177 (615)
Q Consensus 100 ~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L 177 (615)
+|++++|.+. ...+..+.++++|++|++++|.+.......+..+ ++|++|++++|.+....+..++.+++|+ +|
T Consensus 109 ~L~L~~n~i~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 109 HLFFIQTGIS---SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp EEECTTSCCS---CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCC-TTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred EeeccccCcc---cCCcchhccCCcccEEECCCCcccccCcccccCC-cccCEEEcccCcccccChhhhhhhcccceeEE
Confidence 9999999986 3335668899999999999999888665556555 9999999999999877778889999999 89
Q ss_pred EcccCCCccccCCCCCCCCCccEEECCCCCcc-ccccCCCCcC--EEecCCccc--CcccccccccCCC--cCcEEEccC
Q 045619 178 HLSSNKYLTGYLPESNWSTSLRELDLSFSNFT-GFLRNSEELE--FLDLSNNRI--HGRISKSDSQGWK--SLTYLDISN 250 (615)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~L~--~L~l~~~~~--~~~~~~~~~~~l~--~L~~L~l~~ 250 (615)
++++|.+... .+.......|++++++++... ..+..+.++. .+.+....- ...+....+..+. +++.|++++
T Consensus 185 ~l~~n~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~ 263 (606)
T 3t6q_A 185 NLNGNDIAGI-EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263 (606)
T ss_dssp ECTTCCCCEE-CTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred ecCCCccCcc-ChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence 9999966553 344445578999999887522 2233333332 222221110 0122233334333 788999999
Q ss_pred CcccCcCC---CCCCCCcEEEcCCCcccccc--CCCCCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCC
Q 045619 251 NFLTQIEQ---HPWKNITVLNLRNNTIQGTI--LVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPP 325 (615)
Q Consensus 251 ~~~~~~~~---~~~~~L~~L~l~~~~i~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~ 325 (615)
|.++.+++ ..+++|++|++++|.+.... +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++.
T Consensus 264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 99888876 45678999999999887442 23378999999999999988888899999999999999988767766
Q ss_pred ChhccccCCcEEEccCCcccccC--chhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCcc-ccC
Q 045619 326 CLGNFSTQLTILHLNNNKLQGRI--PDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPS-WLG 402 (615)
Q Consensus 326 ~~~~~~~~L~~L~L~~~~i~~~~--~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~ 402 (615)
..+...++|++|++++|.+.+.. +..+. .+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+. .+.
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLR-NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTT-TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcc-cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 53333459999999999987544 44444 448999999999999988888999999999999999999877654 488
Q ss_pred CCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccce
Q 045619 403 CLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSV 482 (615)
Q Consensus 403 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 482 (615)
.+++|++|++++|.+....+. .+..+++|+.|++++|.+.+.....
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~-------------------------------- 468 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQ--LFDGLPALQHLNLQGNHFPKGNIQK-------------------------------- 468 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTT--TTTTCTTCCEEECTTCBCGGGEECS--------------------------------
T ss_pred CcccCCEEECCCCccCCcCHH--HHhCCCCCCEEECCCCCCCcccccc--------------------------------
Confidence 999999999999998764433 3577899999999999987421100
Q ss_pred eEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccc
Q 045619 483 TVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRI 562 (615)
Q Consensus 483 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 562 (615)
...+..+++|+.|++++|++++..|..|..+++|++|+|++|++++..|..|..+++| +|++++|++++..
T Consensus 469 --------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 469 --------TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp --------SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred --------chhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccC
Confidence 0011336789999999999998889999999999999999999998899999999999 9999999999999
Q ss_pred hhhhhhcCcCCeEEcccccceecCC
Q 045619 563 LEQLLSVTALASLNLSYNRLWGRIP 587 (615)
Q Consensus 563 ~~~~~~l~~L~~L~l~~n~i~~~~p 587 (615)
|..++.+++|++|++++|++.+..+
T Consensus 540 ~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGHHHHHTSSEEECTTCCEECSGG
T ss_pred HhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999999999987655
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-47 Score=418.33 Aligned_cols=512 Identities=21% Similarity=0.211 Sum_probs=405.5
Q ss_pred CcEEEEecCCCCceeecCCcccccccccccccccccccCCCCCh-hhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEE
Q 045619 23 GNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISP-EFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHL 101 (615)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 101 (615)
.++++|++++|.+++..+. ++.++++|++|+++++....+|. .|..+++|++|++++|.+.+..|.+|.++++|++|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPE--LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp TTCSEEECCSSCCCCCCTT--HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred CcCcEEECCCCccCccCHH--HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence 5899999999999887666 88899999999999988888887 59999999999999999997878889999999999
Q ss_pred ecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcc-cccccEEEcCCCCCccCCCccccCC---------
Q 045619 102 DLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNL-SSTITVLDLSGTGMRGNFPREIFQL--------- 171 (615)
Q Consensus 102 ~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~~L~~L~l~~~~~~~~~~~~l~~l--------- 171 (615)
++++|.+. ...+..+.++++|++|++++|.+....+..+... +++|++|++++|.+.+..+..+..+
T Consensus 127 ~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 127 DLSHNGLS---STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp ECCSSCCS---CCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred ECCCCccc---ccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence 99999987 5566778899999999999999887766554321 2789999999999887766666544
Q ss_pred ------------------CCCcEEEcccCCCccccCCCCCCC--CCccEEECCCCCcccc----ccCCCCcCEEecCCcc
Q 045619 172 ------------------PHLQELHLSSNKYLTGYLPESNWS--TSLRELDLSFSNFTGF----LRNSEELEFLDLSNNR 227 (615)
Q Consensus 172 ------------------~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~ 227 (615)
++|+.|++++|.+.......+... ++|++|++++|.+... +..+++|++|++++|.
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 456777777775554433344444 3599999999988753 6778999999999999
Q ss_pred cCcccccccccCCCcCcEEEccCCccc---------Cc---CCCCCCCCcEEEcCCCccccccC---CCCCCceEEEccC
Q 045619 228 IHGRISKSDSQGWKSLTYLDISNNFLT---------QI---EQHPWKNITVLNLRNNTIQGTIL---VPPPSTRAFLFSN 292 (615)
Q Consensus 228 ~~~~~~~~~~~~l~~L~~L~l~~~~~~---------~~---~~~~~~~L~~L~l~~~~i~~~~~---~~~~~L~~L~l~~ 292 (615)
+.+ +....+..+++|+.|+++++... .+ ....+++|+.|++++|.+.+..+ ..+++|++|++++
T Consensus 284 l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 284 IQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp BSE-ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred cCc-cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence 884 44445588999999999876433 11 22456889999999998887554 3488999999998
Q ss_pred Cccccc--CcccccC--CCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCc
Q 045619 293 NKLFGQ--IPPSICS--LSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNK 368 (615)
Q Consensus 293 ~~~~~~--~~~~l~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~ 368 (615)
|.+... ....+.. .++|+.|++++|.+.+..|..+..+. +|+.|++++|.+.+..+......+++|++|++++|.
T Consensus 363 n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC-CCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 874322 2222332 36899999999998865566666554 899999999998766665444555899999999999
Q ss_pred ccCCCCcccCCCCCccEEEcCCCcCC--ccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCC
Q 045619 369 LEGPFPRYLADCDELEVVNVGNNMIG--DTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGF 446 (615)
Q Consensus 369 i~~~~~~~~~~l~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 446 (615)
+.+..+..|..++.|++|++++|.+. +..|..+..+++|+.|++++|++.... ...+..+++|+.|++++|.+.+.
T Consensus 442 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~--~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN--DDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCGGG
T ss_pred cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCC--hhhhccccccCEEeCCCCCcccc
Confidence 88888888889999999999999876 567788899999999999999887633 33457789999999999988753
Q ss_pred C-------chHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCcccc
Q 045619 447 L-------PRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLG 519 (615)
Q Consensus 447 ~-------~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 519 (615)
. +...+.++++|+.++++++.... ++...+..+++|+.|++++|+++...+..|.
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~------------------i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 581 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDE------------------IPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCC------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred chhhccCCcchhhcCCCCCCEEECCCCCCCC------------------CCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence 2 22236788888888888875332 2222345578999999999999988788899
Q ss_pred CCCCCcEEeCcCCcCcccCCcccc-CCCCCCEEeCCCCccccc
Q 045619 520 DFKSLIVLNLSHNGLTGSIPVSFA-NMTALESLDLSSNKLHGR 561 (615)
Q Consensus 520 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~ 561 (615)
.+++|++|++++|++++..+..|. .+++|+.|++++|++.+.
T Consensus 582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 999999999999999977777777 789999999999998764
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.2e-47 Score=412.22 Aligned_cols=522 Identities=19% Similarity=0.135 Sum_probs=378.0
Q ss_pred EEEecCCCCceeecCCcccccccccccccccccccCCCCCh-hhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecC
Q 045619 26 IGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISP-EFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLF 104 (615)
Q Consensus 26 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 104 (615)
++++++++.++. +|. .+ ..++++|++++.....++. .|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 14 ~~~~c~~~~l~~-ip~--~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 14 ITYQCMDQKLSK-VPD--DI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TEEECTTSCCSS-CCT--TS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEccCCCccc-CCC--CC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 357778877754 332 22 2678899998887776654 78999999999999999998888889999999999999
Q ss_pred CCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCcc-CCCccccCCCCCcEEEcccCC
Q 045619 105 DCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRG-NFPREIFQLPHLQELHLSSNK 183 (615)
Q Consensus 105 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~ 183 (615)
+|.+. ...|..+.++++|++|++++|.+....+..+..+ ++|++|++++|.+.+ ..|..++++++|++|++++|.
T Consensus 89 ~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 89 GNPIQ---SFSPGSFSGLTSLENLVAVETKLASLESFPIGQL-ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp TCCCC---CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTC-TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCccc---ccChhhcCCcccCCEEEccCCccccccccccCCC-CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 99886 5557888999999999999999988877778887 999999999999875 468889999999999999997
Q ss_pred CccccCCCCCCCCC----ccEEECCCCCcccc---ccCCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCc
Q 045619 184 YLTGYLPESNWSTS----LRELDLSFSNFTGF---LRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQI 256 (615)
Q Consensus 184 ~~~~~~~~~~~~~~----L~~L~l~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 256 (615)
+.......+..+.+ +.++++++|.+... .....+|++|++++|.+.+......+..++.++.+.+....+...
T Consensus 165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred ceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 66544444444333 45899999988764 223348999999999886555555568888888888766544332
Q ss_pred CC------CCCC-----CCcEEEc-CCCccccccC--CCCCCceEEEccCCcccccCcccccCCCccceeeccccccCCC
Q 045619 257 EQ------HPWK-----NITVLNL-RNNTIQGTIL--VPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGT 322 (615)
Q Consensus 257 ~~------~~~~-----~L~~L~l-~~~~i~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 322 (615)
.. ..+. .++.+++ ..+.+.+..+ ..+++|+.+++.++.+.. ++ .+..+++|+.|++++|.+. .
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~ 321 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-Q 321 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-S
T ss_pred CcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-c
Confidence 11 1111 3445555 4444444333 236778888888887753 44 6777788888888888773 6
Q ss_pred CCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCC--CCcccCCCCCccEEEcCCCcCCccCccc
Q 045619 323 IPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGP--FPRYLADCDELEVVNVGNNMIGDTFPSW 400 (615)
Q Consensus 323 ~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 400 (615)
+|. + .+ ++|++|++++|...+.. .+. .+++|++|++++|.+++. .+..+..+++|++|++++|.+++ .|..
T Consensus 322 lp~-~-~l-~~L~~L~l~~n~~~~~~--~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~ 394 (606)
T 3vq2_A 322 FPT-L-DL-PFLKSLTLTMNKGSISF--KKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN 394 (606)
T ss_dssp CCC-C-CC-SSCCEEEEESCSSCEEC--CCC-CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC
T ss_pred ccc-C-CC-CccceeeccCCcCccch--hhc-cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhh
Confidence 773 3 44 47888888887544332 222 347788888888877654 36667777888888888887754 4466
Q ss_pred cCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCcccccccccccc
Q 045619 401 LGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQD 480 (615)
Q Consensus 401 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 480 (615)
+..+++|+.|++++|++.+..+. ..+..+++|+.|++++|.+.+..+.. +
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~---------------------------- 444 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEF-SAFLSLEKLLYLDISYTNTKIDFDGI-F---------------------------- 444 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTT-TTTTTCTTCCEEECTTSCCEECCTTT-T----------------------------
T ss_pred ccCCCCCCeeECCCCccCCccCh-hhhhccccCCEEECcCCCCCccchhh-h----------------------------
Confidence 77788888888888877664331 23466778888888888777554432 1
Q ss_pred ceeEEecCchhhHHhhccccceEeCCCCccCc-cCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCccc
Q 045619 481 SVTVTVKGRDVVLKRIITILTTIDLSSNQFQA-EIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLH 559 (615)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 559 (615)
..+++|++|++++|++.+ ..|..++.+++|++|++++|++++..|..|..+++|++|++++|+++
T Consensus 445 --------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 445 --------------LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp --------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred --------------cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 225667888888888776 36777788888888888888887777777888888888888888888
Q ss_pred ccchhhhhhcCcCCeEEcccccceecCCCCCC-CC-CccCcccCCCcCccCCCC
Q 045619 560 GRILEQLLSVTALASLNLSYNRLWGRIPRGNQ-FN-TFENDSYIGNIHLCGEPL 611 (615)
Q Consensus 560 ~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~-~~-~~~~~~~~~~~~~~~~~~ 611 (615)
+..|..|..+++|++|++++|++. .+|..+. ++ +++.+.+.|||+.|++++
T Consensus 511 ~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 777778888888888888888876 5666432 43 577888888888887775
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-45 Score=400.31 Aligned_cols=507 Identities=20% Similarity=0.150 Sum_probs=401.6
Q ss_pred CCCcEEEEecCCCCceeecCCcccccccccccccccccccCCCC-ChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCc
Q 045619 21 VTGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQI-SPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLT 99 (615)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l-~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 99 (615)
.+.++++|++++|.+++..+. .+.++++|++|+++++....+ |..|.++++|++|++++|.+++..|.+|+++++|+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 457899999999999887665 788999999999998877766 56799999999999999999988899999999999
Q ss_pred EEecCCCcCccccCcchhhccCCCCCCEEecccccCCCC-CchhhhcccccccEEEcCCCCCccCCCccccCCCCC----
Q 045619 100 HLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLI-EPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHL---- 174 (615)
Q Consensus 100 ~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L---- 174 (615)
+|++++|.+. ...+..++++++|++|++++|.+... .|..+..+ ++|++|++++|.+.+..+..++.+++|
T Consensus 108 ~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 108 NLVAVETKLA---SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL-TNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp EEECTTSCCC---CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC-TTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred EEEccCCccc---cccccccCCCCCCCEEeCCCCcccceechHhHhhc-CCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 9999999986 33446689999999999999998863 47778888 999999999999997777777766555
Q ss_pred cEEEcccCCCccccCCCCCCCCCccEEECCCCCccc-----cccCCCCcCEEecCCcccCc-----ccccccccCCC--c
Q 045619 175 QELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTG-----FLRNSEELEFLDLSNNRIHG-----RISKSDSQGWK--S 242 (615)
Q Consensus 175 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~l~--~ 242 (615)
++|++++|.+.......+ ...+|++|++++|.+.. .+..++.++.+++....+.+ ......+..+. .
T Consensus 184 ~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp CEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred ceeeccCCCcceeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 489999997665443333 34589999999998753 46778888887775433321 11222222222 3
Q ss_pred CcEEEc-cCCcccCcCC--CCCCCCcEEEcCCCcccccc-CCCCCCceEEEccCCcccccCcccccCCCccceeeccccc
Q 045619 243 LTYLDI-SNNFLTQIEQ--HPWKNITVLNLRNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNN 318 (615)
Q Consensus 243 L~~L~l-~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 318 (615)
++.+++ ..+.+....+ ..+++|+.|+++++.+.... ...+++|++|++++|.+ +.+| .+ .+++|+.|++++|.
T Consensus 263 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNK 339 (606)
T ss_dssp EEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCS
T ss_pred HhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCc
Confidence 455555 4445544433 44578888998888876544 23378899999999998 4666 44 89999999999995
Q ss_pred cCCCCCCChhccccCCcEEEccCCccccc--CchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCcc
Q 045619 319 LNGTIPPCLGNFSTQLTILHLNNNKLQGR--IPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDT 396 (615)
Q Consensus 319 l~~~~~~~~~~~~~~L~~L~L~~~~i~~~--~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~ 396 (615)
..+.. .+..+ ++|++|++++|.+.+. .+..+... ++|++|++++|.++. .+..+.++++|++|++++|.+++.
T Consensus 340 ~~~~~--~~~~l-~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 340 GSISF--KKVAL-PSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp SCEEC--CCCCC-TTCCEEECCSSCEEEEEECCHHHHCC-SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST
T ss_pred Cccch--hhccC-CCCCEEECcCCccCCCcchhhhhccC-CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc
Confidence 54333 33344 4899999999998754 25555544 899999999999884 557889999999999999999888
Q ss_pred Cc-cccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCC-CchHHHhchhhhcccccCCCCCcccccc
Q 045619 397 FP-SWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGF-LPRWIFVSLEAMKNVDEKGSDGLYMQRE 474 (615)
Q Consensus 397 ~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~ 474 (615)
.+ ..+..+++|++|++++|.+....+. .+..+++|+.|++++|.+.+. .|..
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~------------------------ 468 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKIDFDG--IFLGLTSLNTLKMAGNSFKDNTLSNV------------------------ 468 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECCTT--TTTTCTTCCEEECTTCEEGGGEECSC------------------------
T ss_pred cChhhhhccccCCEEECcCCCCCccchh--hhcCCCCCCEEECCCCcCCCcchHHh------------------------
Confidence 77 6889999999999999998774443 357889999999999988753 2221
Q ss_pred ccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCC
Q 045619 475 EDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLS 554 (615)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 554 (615)
+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..|..+++|++|+++
T Consensus 469 -------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 469 -------------------FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp -------------------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred -------------------hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence 1225779999999999998888999999999999999999998889999999999999999
Q ss_pred CCcccccchhhhhhcC-cCCeEEcccccceecCCC
Q 045619 555 SNKLHGRILEQLLSVT-ALASLNLSYNRLWGRIPR 588 (615)
Q Consensus 555 ~n~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~p~ 588 (615)
+|+++ .+|..+..++ +|++|++++|++....|.
T Consensus 530 ~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 530 FNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99998 5666688887 699999999999876654
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=413.31 Aligned_cols=514 Identities=20% Similarity=0.173 Sum_probs=315.0
Q ss_pred ccccccccccccCCCC-ChhhhcCCCCceeeCCCCccCCC-CchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCC
Q 045619 49 LRLQSLAFNNFNGSQI-SPEFLRLKELTYLNLSYTRFSGL-LPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLS 126 (615)
Q Consensus 49 ~~L~~L~~~~~~~~~l-~~~l~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~ 126 (615)
.++++|+++++.+..+ |.+|.++++|++|++++|...+. .|.+|.++++|++|++++|.+. ...|..+.++++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY---FLHPDAFQGLFHLF 100 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC---EECTTSSCSCSSCC
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc---ccCHhHccCCcccC
Confidence 4555555555544433 44566666666666666633322 2555666666666666666654 33455566666666
Q ss_pred EEecccccCCCCCchh--hhcccccccEEEcCCCCCccCCC-ccccCCCCCcEEEcccCCCccccCCCCCCC--CCccEE
Q 045619 127 VLNLGWADRSLIEPFS--VLNLSSTITVLDLSGTGMRGNFP-REIFQLPHLQELHLSSNKYLTGYLPESNWS--TSLREL 201 (615)
Q Consensus 127 ~L~l~~~~~~~~~~~~--~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L 201 (615)
+|++++|.+....+.. +..+ ++|++|++++|.+.+..+ ..++++++|++|++++|.+.......+..+ ++|+.|
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSC-SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred EeeCcCCCCCcccccCcccccc-CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 6666666655433332 4444 666666666666554333 345666666666666664433222222222 455555
Q ss_pred ECCCCCcccc----ccCCC------CcCEEecCCcccCcccccccccCC--CcCcEEEccCCcccCcCCCCCCCCcEEEc
Q 045619 202 DLSFSNFTGF----LRNSE------ELEFLDLSNNRIHGRISKSDSQGW--KSLTYLDISNNFLTQIEQHPWKNITVLNL 269 (615)
Q Consensus 202 ~l~~~~~~~~----~~~~~------~L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~L~~L~l 269 (615)
+++.|.+... +..++ .|+.|++++|.+.+..+......+ ..++.+.+..+.+... .
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~------------~ 247 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG------------F 247 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS------------S
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc------------c
Confidence 5555544431 11122 255555555544433333322211 3344444432211100 0
Q ss_pred CCCcccc---ccCCC--CCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcc
Q 045619 270 RNNTIQG---TILVP--PPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKL 344 (615)
Q Consensus 270 ~~~~i~~---~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i 344 (615)
..+.+.+ ..+.. .++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+. +|++|++++|.+
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l 326 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLL 326 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCC
T ss_pred cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCC
Confidence 0111111 11111 35677777777777766667777777777777777777644455555543 777777777777
Q ss_pred cccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCC
Q 045619 345 QGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCES 424 (615)
Q Consensus 345 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 424 (615)
.+..+..+... ++|++|++++|.+....+..|.++++|++|++++|.+++. ..+++|+.+++++|++....
T Consensus 327 ~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~--- 397 (844)
T 3j0a_A 327 GELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLP--- 397 (844)
T ss_dssp SCCCSCSCSSC-TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCC---
T ss_pred CccCHHHhcCC-CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccccc---
Confidence 65445444433 6777777777777766666677777777777777777532 23677777777777766321
Q ss_pred ccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEe
Q 045619 425 NIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTID 504 (615)
Q Consensus 425 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 504 (615)
....+++.+++++|.+.+......+..+++|+.++++++......... ....+++|+.|+
T Consensus 398 ---~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------~~~~~~~L~~L~ 457 (844)
T 3j0a_A 398 ---KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ-----------------TPSENPSLEQLF 457 (844)
T ss_dssp ---CCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS-----------------SSCSCTTCCBCE
T ss_pred ---ccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc-----------------ccccCCcccccc
Confidence 124567777777777776555555567777777777766533221100 011257799999
Q ss_pred CCCCccC-----ccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEccc
Q 045619 505 LSSNQFQ-----AEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSY 579 (615)
Q Consensus 505 l~~~~i~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 579 (615)
+++|.+. +..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|+++...+..+. ++|+.|++++
T Consensus 458 Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~ 535 (844)
T 3j0a_A 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISR 535 (844)
T ss_dssp EESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEE
T ss_pred CCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCC
Confidence 9999886 33446688899999999999999987888889999999999999999877776655 8899999999
Q ss_pred ccceecCCCCCCCCCccCcccCCCcCccCCCCC
Q 045619 580 NRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLT 612 (615)
Q Consensus 580 n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (615)
|++.+..|.. +.+++.+.+.|||+.|++++.
T Consensus 536 N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 536 NQLLAPNPDV--FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp ECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred CcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence 9999888865 358889999999999988864
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.8e-44 Score=398.25 Aligned_cols=506 Identities=21% Similarity=0.206 Sum_probs=383.5
Q ss_pred CCCcEEEEecCCCCceeecCCcccccccccccccccccc-cCCCC-ChhhhcCCCCceeeCCCCccCCCCchhhhcCCCC
Q 045619 21 VTGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNF-NGSQI-SPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKL 98 (615)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~-~~~~l-~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L 98 (615)
.+.++++|+|++|.+++..+. .+.++.+|++|+++++ ....+ |..|.++++|++|+|++|.+.+..|.+|.++++|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 467999999999999887776 8899999999999887 33345 7789999999999999999998889999999999
Q ss_pred cEEecCCCcCccccCcchhh--ccCCCCCCEEecccccCCCCCc-hhhhcccccccEEEcCCCCCccCCCccccCC--CC
Q 045619 99 THLDLFDCDMTIEQKSFDLL--ASNLTKLSVLNLGWADRSLIEP-FSVLNLSSTITVLDLSGTGMRGNFPREIFQL--PH 173 (615)
Q Consensus 99 ~~L~L~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l--~~ 173 (615)
++|++++|.+. +..+.. +.++++|++|++++|.+....+ ..+..+ ++|++|++++|.+.+..+..+..+ ++
T Consensus 100 ~~L~Ls~n~l~---~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L-~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 100 FELRLYFCGLS---DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL-NSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CCEECTTCCCS---SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC-SSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred CEeeCcCCCCC---cccccCccccccCCCCEEECCCCcccccccchhHhhC-CCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 99999999986 444443 8899999999999999987765 456667 999999999999988888888877 89
Q ss_pred CcEEEcccCCCccccCCCCCCCC------CccEEECCCCCcccc----c---cCCCCcCEEecCCcccCc--------cc
Q 045619 174 LQELHLSSNKYLTGYLPESNWST------SLRELDLSFSNFTGF----L---RNSEELEFLDLSNNRIHG--------RI 232 (615)
Q Consensus 174 L~~L~l~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~----~---~~~~~L~~L~l~~~~~~~--------~~ 232 (615)
|+.|++++|.+.......+.... .|+.|++++|.+... + .....++.+.+..+.+.. ..
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 99999999966554333333333 499999999976542 1 123567888876332211 12
Q ss_pred ccccccCC--CcCcEEEccCCcccCcCC---CCCCCCcEEEcCCCccccccC---CCCCCceEEEccCCcccccCccccc
Q 045619 233 SKSDSQGW--KSLTYLDISNNFLTQIEQ---HPWKNITVLNLRNNTIQGTIL---VPPPSTRAFLFSNNKLFGQIPPSIC 304 (615)
Q Consensus 233 ~~~~~~~l--~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~ 304 (615)
....+..+ ++|+.|++++|.+..+.+ ..+++|+.|++++|.+.+..+ ..+++|++|++++|.+.+..+..+.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 22223333 678889998888877765 445788888888888776543 3377888888888888877777888
Q ss_pred CCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCcc
Q 045619 305 SLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384 (615)
Q Consensus 305 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 384 (615)
.+++|+.|++++|.+.+..+..+..+ ++|+.|++++|.+.+ ++. +++|+.|++++|.++ .+|.. ...++
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~-i~~-----~~~L~~L~l~~N~l~-~l~~~---~~~l~ 404 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFL-EKLQTLDLRDNALTT-IHF-----IPSIPDIFLSGNKLV-TLPKI---NLTAN 404 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSC-CCCCEEEEETCCSCC-CSS-----CCSCSEEEEESCCCC-CCCCC---CTTCC
T ss_pred CCCCCCEEECCCCCCCccChhhhcCC-CCCCEEECCCCCCCc-ccC-----CCCcchhccCCCCcc-ccccc---ccccc
Confidence 88888888888888873333444444 488888888888763 222 368888888888887 33332 46788
Q ss_pred EEEcCCCcCCccCc-cccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhccccc
Q 045619 385 VVNVGNNMIGDTFP-SWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDE 463 (615)
Q Consensus 385 ~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~ 463 (615)
.|++++|.+++... ..+..+++|+.|++++|++...... ..+..+++|+.|++++|.+....+...
T Consensus 405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~L~~L~Ls~N~l~~~~~~~~------------ 471 (844)
T 3j0a_A 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD-QTPSENPSLEQLFLGENMLQLAWETEL------------ 471 (844)
T ss_dssp EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS-SSSCSCTTCCBCEEESCCCSSSCCSCC------------
T ss_pred eeecccCccccCchhhhhhcCCccceeeCCCCcccccccc-cccccCCccccccCCCCcccccccccc------------
Confidence 88888888866432 3355788888888888887753322 223457788888888888763322110
Q ss_pred CCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCcccc
Q 045619 464 KGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFA 543 (615)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 543 (615)
....+..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..+.
T Consensus 472 --------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 472 --------------------------CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp --------------------------CSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred --------------------------chhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 000112367899999999999988889999999999999999999966666655
Q ss_pred CCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCC
Q 045619 544 NMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIP 587 (615)
Q Consensus 544 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p 587 (615)
++|+.|++++|++++..|..| .+|+.+++++|++....+
T Consensus 526 --~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp --SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred --ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 899999999999999888765 579999999999987544
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.5e-44 Score=389.76 Aligned_cols=503 Identities=19% Similarity=0.229 Sum_probs=281.4
Q ss_pred CCCCCCCCCccc---ceeeeCCCCCcEEEEecCCCCceeecCCcccccccccccccccccccCC-------------CCC
Q 045619 2 TSWAEGTDCCSW---DGVTCDNVTGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGS-------------QIS 65 (615)
Q Consensus 2 ~~~~~~~~~~~~---~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~-------------~l~ 65 (615)
++|+.+++||.| +|++|... ++|++|+|+++.+.|.+++ +++++++|++|+++++... .+|
T Consensus 58 ~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~ 134 (636)
T 4eco_A 58 ANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134 (636)
T ss_dssp CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCC
T ss_pred CCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HHhcCccceEEECcCCccccCCccccccccccCch
Confidence 479999999999 99999754 8999999999999998665 6666666666666554320 133
Q ss_pred hhhhcCCCCceeeCCCCccCCCCchhhhc-CCCCcEEecCCCcCccccCcchhhccCCCCCCEEecc--cccCCCCCchh
Q 045619 66 PEFLRLKELTYLNLSYTRFSGLLPQEISH-MSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLG--WADRSLIEPFS 142 (615)
Q Consensus 66 ~~l~~l~~L~~L~L~~~~~~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~--~~~~~~~~~~~ 142 (615)
... +..|| ++++++.+.+..|..+.. +..+..+++....+. ......++.+.+. .|.+.. .|..
T Consensus 135 ~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~~l~~l~l~~~~n~l~~-ip~~ 201 (636)
T 4eco_A 135 DEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK---------KSSRITLKDTQIGQLSNNITF-VSKA 201 (636)
T ss_dssp HHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC---------CCCCCCCCTTTTTCCSCEEEE-ECGG
T ss_pred HHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccc---------cccccchhhhhhccccCCCcc-CCHH
Confidence 322 33444 555555554444433331 111111111110000 0000011111111 112222 2223
Q ss_pred hhcccccccEEEcCCCCCccC-----------------CCcccc--CCCCCcEEEcccCCCccccCCCCCCCCCccEEEC
Q 045619 143 VLNLSSTITVLDLSGTGMRGN-----------------FPREIF--QLPHLQELHLSSNKYLTGYLPESNWSTSLRELDL 203 (615)
Q Consensus 143 ~~~l~~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 203 (615)
+..+ ++|++|++++|.+.+. +|..++ ++++|++|++++|.+.......
T Consensus 202 l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~------------ 268 (636)
T 4eco_A 202 VMRL-TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF------------ 268 (636)
T ss_dssp GGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT------------
T ss_pred Hhcc-cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH------------
Confidence 3333 3344444444433332 444444 4444444444444322211122
Q ss_pred CCCCccccccCCCCcCEEecCCcc-cCc-ccccccccC------CCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccc
Q 045619 204 SFSNFTGFLRNSEELEFLDLSNNR-IHG-RISKSDSQG------WKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQ 275 (615)
Q Consensus 204 ~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~------l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~ 275 (615)
+..+++|++|++++|. +++ .+|..+ .. +++|++|++++|+++.++..
T Consensus 269 --------l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~---------------- 323 (636)
T 4eco_A 269 --------LKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVE---------------- 323 (636)
T ss_dssp --------TTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCH----------------
T ss_pred --------HhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCCccCch----------------
Confidence 2223333333333333 332 222222 11 13444444444433322210
Q ss_pred cccCCCCCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccC-CcEEEccCCcccccCchhhhc
Q 045619 276 GTILVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQ-LTILHLNNNKLQGRIPDAFAN 354 (615)
Q Consensus 276 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~-L~~L~L~~~~i~~~~~~~~~~ 354 (615)
..+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.+. .+|..+..+. + |++|++++|.+. .+|..+..
T Consensus 324 -~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~-~lp~~~~~ 398 (636)
T 4eco_A 324 -TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFT-EQVENLSFAHNKLK-YIPNIFDA 398 (636)
T ss_dssp -HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEEC-TTCCEEECCSSCCS-SCCSCCCT
T ss_pred -hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhc-ccCcEEEccCCcCc-ccchhhhh
Confidence 000012233333333333333445 5666777777777777776 6776666665 5 777777777776 55654433
Q ss_pred C-CCcccEEEcCCCcccCCCCcccC-------CCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCcc
Q 045619 355 G-SCSLRSLDLNSNKLEGPFPRYLA-------DCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNI 426 (615)
Q Consensus 355 ~-~~~L~~L~l~~~~i~~~~~~~~~-------~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 426 (615)
. +++|++|++++|.+++..|..+. .+++|++|++++|.++...+..+..+++|++|++++|++.. .+....
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~ 477 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSL 477 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB-CCSSSS
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC-cCHHHh
Confidence 2 23688888888888777777676 66788888888888875555556678888888888888773 222111
Q ss_pred ------CCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhcccc
Q 045619 427 ------MFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITIL 500 (615)
Q Consensus 427 ------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 500 (615)
...+++|+.|++++|.+. .+|..++. ..+++|
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-----------------------------------------~~l~~L 515 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA-----------------------------------------TTLPYL 515 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCC-BCCGGGST-----------------------------------------TTCTTC
T ss_pred ccccccccccCCccEEECcCCcCC-ccChhhhh-----------------------------------------ccCCCc
Confidence 112338888888888887 45533210 124668
Q ss_pred ceEeCCCCccCccCCccccCCCCCcEEeC------cCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCe
Q 045619 501 TTIDLSSNQFQAEIPRVLGDFKSLIVLNL------SHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALAS 574 (615)
Q Consensus 501 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 574 (615)
+.|++++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|+|++|++. .+|..+. ++|++
T Consensus 516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~ 591 (636)
T 4eco_A 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISV 591 (636)
T ss_dssp CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCE
T ss_pred CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCE
Confidence 888888888886 7778888888888888 456677788888888888999999888884 5566544 78888
Q ss_pred EEcccccceecCCCCCCC---CCccCcccCCCcCccCCC
Q 045619 575 LNLSYNRLWGRIPRGNQF---NTFENDSYIGNIHLCGEP 610 (615)
Q Consensus 575 L~l~~n~i~~~~p~~~~~---~~~~~~~~~~~~~~~~~~ 610 (615)
|++++|++...-+....+ .....+.+...+.+++||
T Consensus 592 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 592 LDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp EECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred EECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 999988887543332221 223344445555555554
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-43 Score=382.93 Aligned_cols=508 Identities=18% Similarity=0.182 Sum_probs=297.2
Q ss_pred CCcEEEEecCCCCceeecCCcccccccccccccccccccCCCCC-hhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcE
Q 045619 22 TGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQIS-PEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTH 100 (615)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 100 (615)
+.++++|++++|.+++..+. ++..+++|++|++.++....++ ..|.++++|++|++++|.+++..|.+|.++++|++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred cccccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 44677777777777665443 5555666666666555544443 34566666666666666665555555666666666
Q ss_pred EecCCCcCccccCcchhhccCCCCCCEEecccccCCCC-CchhhhcccccccEEEcCCCCCccCCCccccCCCCC----c
Q 045619 101 LDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLI-EPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHL----Q 175 (615)
Q Consensus 101 L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L----~ 175 (615)
|++++|.+. ...+..++++++|++|++++|.+... .|..+..+ ++|++|++++|.+....+..++.+++| +
T Consensus 105 L~L~~n~l~---~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 105 LVAVETNLA---SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp EECTTSCCC---CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred ccccccccc---cCCCccccccccccEEecCCCccceecChhhhccc-CCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 666666554 11112355666666666666655542 24445555 666666666666554444455555555 5
Q ss_pred EEEcccCCCccccCCCCCCCCCccEEECCCCCcc-----ccccCCCCcCEEecCCcccCcccccccccCCCcCcEEEccC
Q 045619 176 ELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFT-----GFLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISN 250 (615)
Q Consensus 176 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 250 (615)
++++++|.+.......+. ..+|++|++++|... ..+..+++++...+....+.. ..
T Consensus 181 ~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~---------~~--------- 241 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN---------EG--------- 241 (570)
T ss_dssp EEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC---------CS---------
T ss_pred hcccCCCCceecCHHHhc-cCcceeEecccccccccchhhhhcCccccceeeeccccccC---------ch---------
Confidence 566666544332222222 224555555443211 112233333332221111100 00
Q ss_pred CcccCcCCCCCC-----CCcEEEcCCC-ccccccCC---CCCCceEEEccCCcccccCcccccCCCccceeeccccccCC
Q 045619 251 NFLTQIEQHPWK-----NITVLNLRNN-TIQGTILV---PPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNG 321 (615)
Q Consensus 251 ~~~~~~~~~~~~-----~L~~L~l~~~-~i~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 321 (615)
.+..+....+. .++.+++..+ .+.+..+. .+++|+++++++|.+. .+|..+..+ +|+.|++++|.+.
T Consensus 242 -~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~- 317 (570)
T 2z63_A 242 -NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG- 317 (570)
T ss_dssp -SCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-
T ss_pred -hhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-
Confidence 00111111111 2333444443 22222222 2566666666666665 455666666 7777777777665
Q ss_pred CCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCC--CcccCCCCCccEEEcCCCcCCccCcc
Q 045619 322 TIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPF--PRYLADCDELEVVNVGNNMIGDTFPS 399 (615)
Q Consensus 322 ~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~ 399 (615)
.+|.. .+ ++|+.|++++|.+.+..+. ..+++|++|++++|.++... +..+.++++|++|++++|.+++..+.
T Consensus 318 ~l~~~--~l-~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 391 (570)
T 2z63_A 318 QFPTL--KL-KSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391 (570)
T ss_dssp SCCBC--BC-SSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE
T ss_pred ccCcc--cc-cccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc
Confidence 55542 22 3677777777766544333 23367777777777766432 45566677777777777776554444
Q ss_pred ccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccc
Q 045619 400 WLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQ 479 (615)
Q Consensus 400 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~ 479 (615)
+..+++|+.|++++|.+....+ ...+..+++|+.|++++|.+.+..+..
T Consensus 392 -~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~----------------------------- 440 (570)
T 2z63_A 392 -FLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGI----------------------------- 440 (570)
T ss_dssp -EETCTTCCEEECTTSEEESCTT-SCTTTTCTTCCEEECTTSCCEECCTTT-----------------------------
T ss_pred -ccccCCCCEEEccCCccccccc-hhhhhcCCCCCEEeCcCCcccccchhh-----------------------------
Confidence 6677777777777776655322 123456677777777777666443322
Q ss_pred cceeEEecCchhhHHhhccccceEeCCCCccC-ccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcc
Q 045619 480 DSVTVTVKGRDVVLKRIITILTTIDLSSNQFQ-AEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKL 558 (615)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 558 (615)
+..+++|++|++++|++. +..|..+..+++|++|++++|++++..|..|..+++|++|++++|++
T Consensus 441 --------------~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 441 --------------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp --------------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred --------------hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 123577899999999987 46788899999999999999999977788999999999999999999
Q ss_pred cccchhhhhhcCcCCeEEcccccceecCCCCCCC-CCccC--cccCCCcCccCCC
Q 045619 559 HGRILEQLLSVTALASLNLSYNRLWGRIPRGNQF-NTFEN--DSYIGNIHLCGEP 610 (615)
Q Consensus 559 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~-~~~~~--~~~~~~~~~~~~~ 610 (615)
++..+..|.++++|++|++++|++.+..|..... .+++. -.+.+.+ .|..|
T Consensus 507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~~~ 560 (570)
T 2z63_A 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS 560 (570)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred CCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhCCC
Confidence 9888888899999999999999998888765332 23222 2234444 77665
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-43 Score=378.47 Aligned_cols=480 Identities=22% Similarity=0.198 Sum_probs=353.5
Q ss_pred CCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhccccccc
Q 045619 72 KELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTIT 151 (615)
Q Consensus 72 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~ 151 (615)
+++++|++++|.+++..+.+|.++++|++|++++|.+. ...+..+.++++|++|++++|.+....+..+..+ ++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~ 103 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL-SSLQ 103 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC---ccCcccccCchhCCEEeCcCCcCCccCHhhhcCc-cccc
Confidence 35777777777776666666777777777777777665 3334556677777777777777666655566665 7777
Q ss_pred EEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccC-CCCCCCCCccEEECCCCCcccc----ccCCCCc----CEEe
Q 045619 152 VLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYL-PESNWSTSLRELDLSFSNFTGF----LRNSEEL----EFLD 222 (615)
Q Consensus 152 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~----~~~~~~L----~~L~ 222 (615)
+|++++|++....+..++.+++|++|++++|.+....+ ..+..+++|++|++++|.+... +..+++| +.++
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence 77777777665444456777777777777775544332 2344556677777776666543 4445566 7889
Q ss_pred cCCcccCcccccccccCCCcCcEEEccCCcccCcCC----CCCCCCcEEEcCCCccc------c---ccCCCC--CCceE
Q 045619 223 LSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ----HPWKNITVLNLRNNTIQ------G---TILVPP--PSTRA 287 (615)
Q Consensus 223 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~i~------~---~~~~~~--~~L~~ 287 (615)
+++|.+. .++...+... +|+.|++++|....... ..++.++.+.+....+. . ..+..+ -.++.
T Consensus 184 l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 184 LSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp CTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred cCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 9998887 4444444444 78889888874321110 23444444433221111 1 111111 23567
Q ss_pred EEccCC-cccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCC
Q 045619 288 FLFSNN-KLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNS 366 (615)
Q Consensus 288 L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~ 366 (615)
+.+.++ .+.+..+..+..+++|+.|++++|.+. .+|..+... +|++|++++|.+. .+|.. .+++|++|++++
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~ 334 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTS 334 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCBC---BCSSCCEEEEES
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCcc---cccccCEEeCcC
Confidence 777777 667778888899999999999999998 788777665 7999999999987 55542 347999999999
Q ss_pred CcccCCCCcccCCCCCccEEEcCCCcCCccC--ccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCc
Q 045619 367 NKLEGPFPRYLADCDELEVVNVGNNMIGDTF--PSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFT 444 (615)
Q Consensus 367 ~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 444 (615)
|.+....+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+...... +..+++|+.|++++|.+.
T Consensus 335 n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~~L~l~~n~l~ 409 (570)
T 2z63_A 335 NKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLK 409 (570)
T ss_dssp CBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTSEEE
T ss_pred Ccccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc---ccccCCCCEEEccCCccc
Confidence 988765543 67899999999999987654 67788999999999999988764332 577899999999999887
Q ss_pred CCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCC
Q 045619 445 GFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSL 524 (615)
Q Consensus 445 ~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L 524 (615)
+..+...+ ..+++|+.|++++|++.+..+..+..+++|
T Consensus 410 ~~~~~~~~------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 447 (570)
T 2z63_A 410 QMSEFSVF------------------------------------------LSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447 (570)
T ss_dssp SCTTSCTT------------------------------------------TTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred cccchhhh------------------------------------------hcCCCCCEEeCcCCcccccchhhhhcCCcC
Confidence 55442211 225779999999999998889999999999
Q ss_pred cEEeCcCCcCc-ccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCC-CCCCCccCcccCC
Q 045619 525 IVLNLSHNGLT-GSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRG-NQFNTFENDSYIG 602 (615)
Q Consensus 525 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~-~~~~~~~~~~~~~ 602 (615)
++|++++|+++ +.+|..|..+++|++|++++|++++..|..|..+++|++|++++|++.+..|.. ..+++++.+.+.+
T Consensus 448 ~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence 99999999997 468999999999999999999999988999999999999999999999877664 4589999999999
Q ss_pred CcCccCCCC
Q 045619 603 NIHLCGEPL 611 (615)
Q Consensus 603 ~~~~~~~~~ 611 (615)
|+..|++|.
T Consensus 528 N~~~~~~~~ 536 (570)
T 2z63_A 528 NPWDCSCPR 536 (570)
T ss_dssp SCBCCCTTT
T ss_pred CcccCCCcc
Confidence 999999885
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-42 Score=371.59 Aligned_cols=456 Identities=18% Similarity=0.163 Sum_probs=287.9
Q ss_pred CCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhccccccc
Q 045619 72 KELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTIT 151 (615)
Q Consensus 72 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~ 151 (615)
++|++|++++|.+++..|.+|.++++|++|++++|.+. ...+..+.++++|++|++++|.+....+..+..+ ++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL-SSLK 101 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC-TTCC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC---ccChhhccccccCCEEECCCCccCccCHHHhccC-CCCc
Confidence 45555555555555444555555555555555555554 2233445555555555555555555444444444 5555
Q ss_pred EEEcCCCCCccC-CCccccCCCCCcEEEcccCCCc-cccCCCCCCCCCccEEECCCCCccc----cccCCCCcCEEecCC
Q 045619 152 VLDLSGTGMRGN-FPREIFQLPHLQELHLSSNKYL-TGYLPESNWSTSLRELDLSFSNFTG----FLRNSEELEFLDLSN 225 (615)
Q Consensus 152 ~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l~~ 225 (615)
+|++++|.+... .+..+..+++|++|++++|... ......+..+++|++|++++|.+.. .+..+++|++|++++
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 555555555431 2344555555666665555422 1112234445555555555555543 244556666666666
Q ss_pred cccCcccccccccCCCcCcEEEccCCcccCcCC------CCCCCCcEEEcCCCccccccC-------CCCCCceEEEccC
Q 045619 226 NRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ------HPWKNITVLNLRNNTIQGTIL-------VPPPSTRAFLFSN 292 (615)
Q Consensus 226 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~~~~L~~L~l~~~~i~~~~~-------~~~~~L~~L~l~~ 292 (615)
|.+. .++...+..+++|++|++++|+++.... ..+++|+.|++++|.+.+..+ ..+++++.+++.+
T Consensus 182 n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 182 SESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp SBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred Cccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 6654 4444444556667777777766665421 234567777777766654322 2256677777777
Q ss_pred CcccccC------cccccCCCccceeeccccccCCCC----CCChhccccCCcEEEccCCcccccCchhhhcCCCcccEE
Q 045619 293 NKLFGQI------PPSICSLSSLEYLSLSHNNLNGTI----PPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSL 362 (615)
Q Consensus 293 ~~~~~~~------~~~l~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L 362 (615)
|.+.+.. ...+..+++++.|++.++.+.... ...+....++|+.|++++|.+. .+|..+...+++|++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFL 339 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEE
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEE
Confidence 7654321 123456677888888777654210 0111222347888888888876 6666665444788888
Q ss_pred EcCCCcccCCCC---cccCCCCCccEEEcCCCcCCccCc--cccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEE
Q 045619 363 DLNSNKLEGPFP---RYLADCDELEVVNVGNNMIGDTFP--SWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIID 437 (615)
Q Consensus 363 ~l~~~~i~~~~~---~~~~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 437 (615)
++++|.+++..+ ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.. .+. .+..+++|+.|+
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~--~~~~~~~L~~L~ 416 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPD--SCQWPEKMRFLN 416 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCS--CCCCCTTCCEEE
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CCh--hhcccccccEEE
Confidence 888888876442 346678888888888888866543 457788888888888888774 222 335678888888
Q ss_pred ccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCcc
Q 045619 438 LSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRV 517 (615)
Q Consensus 438 l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 517 (615)
+++|.+.. ++.. .+++|++|++++|++++.
T Consensus 417 Ls~N~l~~-l~~~---------------------------------------------~~~~L~~L~Ls~N~l~~~---- 446 (549)
T 2z81_A 417 LSSTGIRV-VKTC---------------------------------------------IPQTLEVLDVSNNNLDSF---- 446 (549)
T ss_dssp CTTSCCSC-CCTT---------------------------------------------SCTTCSEEECCSSCCSCC----
T ss_pred CCCCCccc-ccch---------------------------------------------hcCCceEEECCCCChhhh----
Confidence 88888763 2211 024688899999988853
Q ss_pred ccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCC
Q 045619 518 LGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPR 588 (615)
Q Consensus 518 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~ 588 (615)
...+++|++|++++|+++ .+|. ...+++|++|++++|++++..|..|+.+++|++|++++|++.+..|.
T Consensus 447 ~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 447 SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 257889999999999998 6665 46788999999999999988888889999999999999998877763
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.4e-41 Score=371.82 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=59.3
Q ss_pred CCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccce
Q 045619 506 SSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLW 583 (615)
Q Consensus 506 ~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 583 (615)
++|++.+..|..+.++++|++|+|++|+++ .+|..+. ++|+.|+|++|++....+..+.....+..+.+.+|++.
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 447777788888999999999999999994 7887765 69999999999988777777766666666667666553
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-41 Score=363.23 Aligned_cols=454 Identities=17% Similarity=0.177 Sum_probs=286.9
Q ss_pred cccccccccccCCCC-ChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEE
Q 045619 50 RLQSLAFNNFNGSQI-SPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVL 128 (615)
Q Consensus 50 ~L~~L~~~~~~~~~l-~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L 128 (615)
+|++|+++++....+ |..|..+++|++|++++|.+++..|.+|.++++|++|++++|.+. ...+..+.++++|++|
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS---SLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC---SCCHHHHTTCTTCCEE
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC---ccCHHHhccCCCCcEE
Confidence 344444443333322 234555555555555555555444445555555555555555543 2333334555555555
Q ss_pred ecccccCCCC-CchhhhcccccccEEEcCCCCC-ccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCC
Q 045619 129 NLGWADRSLI-EPFSVLNLSSTITVLDLSGTGM-RGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFS 206 (615)
Q Consensus 129 ~l~~~~~~~~-~~~~~~~l~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 206 (615)
++++|.+... .+..+..+ ++|++|++++|.+ ....+..+..+++|++|++++|.+.......+...++|++|+++++
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred ECCCCcccccchhhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 5555554432 12233333 5555555555542 2222234555555555555555444333334444455555555555
Q ss_pred Ccccc----ccCCCCcCEEecCCcccCccc--ccccccCCCcCcEEEccCCcccCcCC-------CCCCCCcEEEcCCCc
Q 045619 207 NFTGF----LRNSEELEFLDLSNNRIHGRI--SKSDSQGWKSLTYLDISNNFLTQIEQ-------HPWKNITVLNLRNNT 273 (615)
Q Consensus 207 ~~~~~----~~~~~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~-------~~~~~L~~L~l~~~~ 273 (615)
.+... +..+++|++|++++|.+.+.. +......+++|+.|+++++.+++..+ ..+++++.+++++|.
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 44321 234556666666666554311 12222345566666666665543221 234566666666665
Q ss_pred cccc---------cCCCCCCceEEEccCCccccc-----CcccccCCCccceeeccccccCCCCCCChhccccCCcEEEc
Q 045619 274 IQGT---------ILVPPPSTRAFLFSNNKLFGQ-----IPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHL 339 (615)
Q Consensus 274 i~~~---------~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L 339 (615)
+.+. .+...++++.+.+.++.+... .+..+...++|+.|++++|.+. .+|..++...++|++|++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~L 341 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDL 341 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEEC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEc
Confidence 5432 123367788888887765432 1222334578999999999987 888777544458999999
Q ss_pred cCCcccccCchh--hhcCCCcccEEEcCCCcccCCCC--cccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCC
Q 045619 340 NNNKLQGRIPDA--FANGSCSLRSLDLNSNKLEGPFP--RYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSN 415 (615)
Q Consensus 340 ~~~~i~~~~~~~--~~~~~~~L~~L~l~~~~i~~~~~--~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 415 (615)
++|.+.+..+.. ....+++|++|++++|.+++..+ ..+..+++|++|++++|.++ ..|..+..+++|++|++++|
T Consensus 342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N 420 (549)
T 2z81_A 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST 420 (549)
T ss_dssp CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTS
T ss_pred cCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCC
Confidence 999998655432 23345899999999999985432 45888999999999999996 56778889999999999999
Q ss_pred cccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHh
Q 045619 416 RFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKR 495 (615)
Q Consensus 416 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (615)
++..... ...++|+.|++++|.+++...
T Consensus 421 ~l~~l~~-----~~~~~L~~L~Ls~N~l~~~~~----------------------------------------------- 448 (549)
T 2z81_A 421 GIRVVKT-----CIPQTLEVLDVSNNNLDSFSL----------------------------------------------- 448 (549)
T ss_dssp CCSCCCT-----TSCTTCSEEECCSSCCSCCCC-----------------------------------------------
T ss_pred Ccccccc-----hhcCCceEEECCCCChhhhcc-----------------------------------------------
Confidence 9875221 123689999999999885321
Q ss_pred hccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccch
Q 045619 496 IITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRIL 563 (615)
Q Consensus 496 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 563 (615)
.+++|++|++++|+++ .+|. ...+++|++|+|++|++++..|..|..+++|+.|++++|++.+..|
T Consensus 449 ~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 449 FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 1577999999999998 4554 5689999999999999998888889999999999999999987665
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-39 Score=356.38 Aligned_cols=487 Identities=19% Similarity=0.180 Sum_probs=262.9
Q ss_pred hhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcc
Q 045619 67 EFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNL 146 (615)
Q Consensus 67 ~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 146 (615)
+|.++++|++|+|++|.+++..+.+|.++++|++|+|++|+++ ...+..+.++++|++|++++|.+....+..+..+
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~---~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L 147 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 147 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC---CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence 3445555555555555544444444555555555555555443 1112334445555555555554444443334444
Q ss_pred cccccEEEcCCCCCccC-CCccccCCCCCcEEEcccCCCccccCCCCCCC----CCccEEECCCCCcccc---ccCCCCc
Q 045619 147 SSTITVLDLSGTGMRGN-FPREIFQLPHLQELHLSSNKYLTGYLPESNWS----TSLRELDLSFSNFTGF---LRNSEEL 218 (615)
Q Consensus 147 ~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~---~~~~~~L 218 (615)
++|++|++++|.+... .+..++.+++|++|++++|++.......+..+ .....++++.+.+... ......+
T Consensus 148 -~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~ 226 (635)
T 4g8a_A 148 -KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 226 (635)
T ss_dssp -TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred -cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhh
Confidence 4555555555544321 23344445555555555544332221111111 1122344444443322 1112233
Q ss_pred CEEecCCcccCcccccccccCCCcCcEEEccCCcccC------cCCCCC---CCCcEEEcCCCcc----cc--ccCCCCC
Q 045619 219 EFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQ------IEQHPW---KNITVLNLRNNTI----QG--TILVPPP 283 (615)
Q Consensus 219 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~~---~~L~~L~l~~~~i----~~--~~~~~~~ 283 (615)
+.+++.++.....+....+..+..++...+..+.... .....+ ..+....+..+.. .+ ..+....
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT 306 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence 4444444433322333333444444444333221111 111111 1222222211111 00 0111245
Q ss_pred CceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEE
Q 045619 284 STRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLD 363 (615)
Q Consensus 284 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~ 363 (615)
.++.+.+.++.+... ..+.....++.|++.+|.+. .++... . +.++.+++..+.+..... .. .+++|+.++
T Consensus 307 ~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~-~~~~~~--l-~~L~~l~l~~n~~~~~~~--~~-~l~~L~~L~ 377 (635)
T 4g8a_A 307 NVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFG-QFPTLK--L-KSLKRLTFTSNKGGNAFS--EV-DLPSLEFLD 377 (635)
T ss_dssp TCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEES-SCCCCB--C-TTCCEEEEESCCSCCBCC--CC-BCTTCCEEE
T ss_pred ccccccccccccccc--cccccchhhhhhhccccccc-CcCccc--c-hhhhhcccccccCCCCcc--cc-cccccccch
Confidence 566666666655432 22445566777777777665 322211 1 356777777666542221 11 236777777
Q ss_pred cCCCcccC--CCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCC
Q 045619 364 LNSNKLEG--PFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHN 441 (615)
Q Consensus 364 l~~~~i~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 441 (615)
+++|.+.. ..+..+..+.+|+++++..+.+.. .+..+..+++|+.+++..+....... ...+..+.+++.++++.|
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~ls~n 455 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHT 455 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTS-SCTTTTCTTCCEEECTTS
T ss_pred hhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccc-cccccccccccccccccc
Confidence 77776642 234445556677777777776633 33456677777777777766554322 233456677777777777
Q ss_pred cCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccC-ccCCccccC
Q 045619 442 EFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQ-AEIPRVLGD 520 (615)
Q Consensus 442 ~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~l~~ 520 (615)
.+.+..+.. +..++.++.|++++|++. ...|..|..
T Consensus 456 ~l~~~~~~~-------------------------------------------~~~~~~L~~L~Ls~N~~~~~~~~~~~~~ 492 (635)
T 4g8a_A 456 HTRVAFNGI-------------------------------------------FNGLSSLEVLKMAGNSFQENFLPDIFTE 492 (635)
T ss_dssp CCEECCTTT-------------------------------------------TTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred ccccccccc-------------------------------------------cccchhhhhhhhhhcccccccCchhhhh
Confidence 766443322 122466888888888644 356777888
Q ss_pred CCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCCCC--CCCccCc
Q 045619 521 FKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQ--FNTFEND 598 (615)
Q Consensus 521 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~--~~~~~~~ 598 (615)
+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|+++++|++|++++|+|.+..|..+. +++++.|
T Consensus 493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence 88888888888888877788888888888888888888888788888888888888888888877776544 3678888
Q ss_pred ccCCCcCccCCCC
Q 045619 599 SYIGNIHLCGEPL 611 (615)
Q Consensus 599 ~~~~~~~~~~~~~ 611 (615)
.+.|||+.|||.+
T Consensus 573 ~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 573 NLTQNDFACTCEH 585 (635)
T ss_dssp ECTTCCBCCSGGG
T ss_pred EeeCCCCcccCCc
Confidence 8888888888764
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-40 Score=351.54 Aligned_cols=445 Identities=18% Similarity=0.177 Sum_probs=224.4
Q ss_pred EEEecCCCCceeecCCcccccccccccccccccccCCCCC-hhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecC
Q 045619 26 IGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQIS-PEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLF 104 (615)
Q Consensus 26 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 104 (615)
++++++++.++. ++. .+. .+|++|+++++.+..++ ..|..+++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 3 ~~l~ls~n~l~~-ip~--~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPK--DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSS-CCC--SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccc-ccc--ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 467777777763 232 121 45555555555444443 345555555555555555554445555555555555555
Q ss_pred CCcCccccCcchhhccCCCCCCEEecccccCCCC-CchhhhcccccccEEEcCCCCCccCCCccccCCCCC--cEEEccc
Q 045619 105 DCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLI-EPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHL--QELHLSS 181 (615)
Q Consensus 105 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~ 181 (615)
+|+++ .+|.. .+++|++|++++|.+... .|..+..+ ++|++|++++|.+.+ ..+..+++| +.|++++
T Consensus 78 ~N~l~----~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l-~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 78 HNKLV----KISCH--PTVNLKHLDLSFNAFDALPICKEFGNM-SQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp SSCCC----EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGC-TTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred CCcee----ecCcc--ccCCccEEeccCCccccccchhhhccC-CcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 55543 23322 445555555555554432 23344444 455555555554442 223334444 5555554
Q ss_pred CCCccccCCCCCCCCCccEEECCCCCccc-cccCCCC----cCEEecCCcccCcccccccccCCCcCcEEEccCCc----
Q 045619 182 NKYLTGYLPESNWSTSLRELDLSFSNFTG-FLRNSEE----LEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNF---- 252 (615)
Q Consensus 182 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~----L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---- 252 (615)
|.+.. .. ....+.. ...+++++|.+.+.++...+..+++|+.+++++|.
T Consensus 148 n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 205 (520)
T 2z7x_B 148 GETYG----------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205 (520)
T ss_dssp CTTTT----------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT
T ss_pred ccccc----------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc
Confidence 43300 11 1112222 22455566666555555555666777777776664
Q ss_pred ---ccCcC--CCCCCCCcEEEcCCCccccccCCC------CCCceEEEccCCcccccCcccc-----cCCCccceeeccc
Q 045619 253 ---LTQIE--QHPWKNITVLNLRNNTIQGTILVP------PPSTRAFLFSNNKLFGQIPPSI-----CSLSSLEYLSLSH 316 (615)
Q Consensus 253 ---~~~~~--~~~~~~L~~L~l~~~~i~~~~~~~------~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~ 316 (615)
+.... ...+++|+.|++.+|.+.+..+.. .++|++|++++|.+.+.+|..+ ..++.|+.+++++
T Consensus 206 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~ 285 (520)
T 2z7x_B 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285 (520)
T ss_dssp THHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE
T ss_pred cceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc
Confidence 11111 123455666666655554322111 3456666666666665556555 6666666666666
Q ss_pred cccCCCCC-CChhccc--cCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcC
Q 045619 317 NNLNGTIP-PCLGNFS--TQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMI 393 (615)
Q Consensus 317 ~~l~~~~~-~~~~~~~--~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i 393 (615)
|.+ .+| ..+.... .+|+.|++++|.+.... +...+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 286 n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 360 (520)
T 2z7x_B 286 DVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360 (520)
T ss_dssp CCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC
T ss_pred cce--ecchhhhhcccccCceeEEEcCCCcccccc---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc
Confidence 665 344 2222221 24666666666654221 112335666666666666655566666666666666666666
Q ss_pred Cc--cCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccc
Q 045619 394 GD--TFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYM 471 (615)
Q Consensus 394 ~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 471 (615)
++ ..|..+..+++|++|++++|.+....+.. .+..+++|+.|++++|.+++..+..+
T Consensus 361 ~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l-------------------- 419 (520)
T 2z7x_B 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-DCSWTKSLLSLNMSSNILTDTIFRCL-------------------- 419 (520)
T ss_dssp CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-SCCCCTTCCEEECCSSCCCGGGGGSC--------------------
T ss_pred CccccchHHHhhCCCCCEEECCCCcCCcccccc-hhccCccCCEEECcCCCCCcchhhhh--------------------
Confidence 54 33455666666666666666655422221 22344555555555555543222110
Q ss_pred cccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCcc-ccCCCCCCE
Q 045619 472 QREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVS-FANMTALES 550 (615)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~ 550 (615)
.++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. |..+++|++
T Consensus 420 -------------------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 420 -------------------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK 472 (520)
T ss_dssp -------------------------CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred -------------------------cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccE
Confidence 133555555555555 34444445555555555555555 33332 555555555
Q ss_pred EeCCCCcccc
Q 045619 551 LDLSSNKLHG 560 (615)
Q Consensus 551 L~l~~n~~~~ 560 (615)
|++++|++.+
T Consensus 473 L~l~~N~~~c 482 (520)
T 2z7x_B 473 IWLHTNPWDC 482 (520)
T ss_dssp EECCSSCBCC
T ss_pred EECcCCCCcc
Confidence 5555555544
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.9e-40 Score=348.14 Aligned_cols=453 Identities=18% Similarity=0.156 Sum_probs=325.0
Q ss_pred cccccccccCCCCChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecc
Q 045619 52 QSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLG 131 (615)
Q Consensus 52 ~~L~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 131 (615)
+++++++.....+|..+. ++|++|++++|.+++..|.+|.++++|++|++++|+++ ...|..+.++++|++|+++
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC---EEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccC---CcChHHhhcccCCCEEecC
Confidence 346666776667887665 78999999999998777788999999999999999886 4557788899999999999
Q ss_pred cccCCCCCchhhhcccccccEEEcCCCCCcc-CCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCccc
Q 045619 132 WADRSLIEPFSVLNLSSTITVLDLSGTGMRG-NFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTG 210 (615)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 210 (615)
+|.+... +.. .+ ++|++|++++|.+.+ ..|..++.+++|++|++++|.+...
T Consensus 78 ~N~l~~l-p~~--~l-~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----------------------- 130 (520)
T 2z7x_B 78 HNKLVKI-SCH--PT-VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----------------------- 130 (520)
T ss_dssp SSCCCEE-ECC--CC-CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-----------------------
T ss_pred CCceeec-Ccc--cc-CCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-----------------------
Confidence 9887743 322 44 888999998888875 3567888888888888888854331
Q ss_pred cccCCCCc--CEEecCCccc--CcccccccccCCC-cCcEEEccCCcccCcCC----CCCCCCcEEEcCCCc-------c
Q 045619 211 FLRNSEEL--EFLDLSNNRI--HGRISKSDSQGWK-SLTYLDISNNFLTQIEQ----HPWKNITVLNLRNNT-------I 274 (615)
Q Consensus 211 ~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~-------i 274 (615)
.+..+++| ++|++++|.+ .+..+... ..+. ....+++++|.+....+ ..+++|+.|++++|. +
T Consensus 131 ~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 209 (520)
T 2z7x_B 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGL-QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209 (520)
T ss_dssp GGGGGTTSCEEEEEEEECTTTTSSCCTTTT-TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHH
T ss_pred hccccccceeeEEEeecccccccccccccc-cccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccccee
Confidence 13334555 8888888877 43433332 3333 23356777777654333 356778888888875 3
Q ss_pred cccc--CCCCCCceEEEccCCcccccCccccc---CCCccceeeccccccCCCCCCCh-----hccccCCcEEEccCCcc
Q 045619 275 QGTI--LVPPPSTRAFLFSNNKLFGQIPPSIC---SLSSLEYLSLSHNNLNGTIPPCL-----GNFSTQLTILHLNNNKL 344 (615)
Q Consensus 275 ~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~l~~~~~~~~-----~~~~~~L~~L~L~~~~i 344 (615)
.+.. +..+++|+.+++.++.+.+..+..+. ..++|++|++++|.+.+.+|..+ ..+ ++|+.+++++|.+
T Consensus 210 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l-~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL-KALSIHQVVSDVF 288 (520)
T ss_dssp HHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC-CEEEEEEEEECCC
T ss_pred ecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccC-ceeEeccccccce
Confidence 3322 22378888888888877643322211 24688899999988887788777 444 4788888888887
Q ss_pred cccCc-hhhhcC--CCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCcc
Q 045619 345 QGRIP-DAFANG--SCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPL 421 (615)
Q Consensus 345 ~~~~~-~~~~~~--~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 421 (615)
.+| ..+... ..+|+.|++++|.+.... .+..+++|++|++++|.+++..|.++..+++|++|++++|++.+..
T Consensus 289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 364 (520)
T 2z7x_B 289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364 (520)
T ss_dssp --CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred --ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence 344 222211 146888999888876432 2367888999999999988888888888889999999988877522
Q ss_pred CCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccc
Q 045619 422 CESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILT 501 (615)
Q Consensus 422 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 501 (615)
.....+..+++|+.|++++|.+.+.+|...+ ..+++|+
T Consensus 365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~------------------------------------------~~l~~L~ 402 (520)
T 2z7x_B 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDC------------------------------------------SWTKSLL 402 (520)
T ss_dssp HHHHHHTTCTTCCEEECCSSCCBCCGGGCSC------------------------------------------CCCTTCC
T ss_pred cchHHHhhCCCCCEEECCCCcCCcccccchh------------------------------------------ccCccCC
Confidence 2222346778888888888888764443211 1146688
Q ss_pred eEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEccccc
Q 045619 502 TIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNR 581 (615)
Q Consensus 502 ~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 581 (615)
+|++++|++++..+..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++...+..|..+++|++|++++|+
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 888988888766665554 78899999999888 778777788999999999998885444448888889999999998
Q ss_pred ceecCC
Q 045619 582 LWGRIP 587 (615)
Q Consensus 582 i~~~~p 587 (615)
+.+..+
T Consensus 480 ~~c~c~ 485 (520)
T 2z7x_B 480 WDCSCP 485 (520)
T ss_dssp BCCCHH
T ss_pred CcccCC
Confidence 876543
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.4e-40 Score=355.23 Aligned_cols=465 Identities=17% Similarity=0.220 Sum_probs=325.1
Q ss_pred CCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCcccc---C------cchhhccCCCCCCEEecccccCCCCCchh
Q 045619 72 KELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQ---K------SFDLLASNLTKLSVLNLGWADRSLIEPFS 142 (615)
Q Consensus 72 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~---~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 142 (615)
.+++.|+|+++.+.+.+|.+++++++|++|++++|.+.... + .+|... +..|+ ++++.+......+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 46888888888888888888888888888888888642110 0 222222 34444 555555544444444
Q ss_pred hhcccccccEEEcC--------------------CCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEE
Q 045619 143 VLNLSSTITVLDLS--------------------GTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELD 202 (615)
Q Consensus 143 ~~~l~~~L~~L~l~--------------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 202 (615)
+...+..+..+++. +|++++ +|..++++++|++|++++|.+....... .+.+.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~----- 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICE-AWENE----- 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSS-SCSCT-----
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccc-ccccc-----
Confidence 33222222222221 456665 7778888888888888888644321111 00000
Q ss_pred CCCC----Ccccccc--CCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCc-ccC--cCCCCCCCCcEEEcCCCc
Q 045619 203 LSFS----NFTGFLR--NSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNF-LTQ--IEQHPWKNITVLNLRNNT 273 (615)
Q Consensus 203 l~~~----~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~~L~~L~l~~~~ 273 (615)
... .+...+. .+++|++|++++|.+.+.+|..+ ..+++|++|++++|+ ++. ++. .+.++.
T Consensus 231 -~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~-------- 299 (636)
T 4eco_A 231 -NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKD-DWQALA-------- 299 (636)
T ss_dssp -TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHH-HHHHHH--------
T ss_pred -ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchH-HHHhhh--------
Confidence 000 0222344 67778888888887776666544 677777777777776 543 211 000000
Q ss_pred cccccCCCCCCceEEEccCCcccccCcc--cccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchh
Q 045619 274 IQGTILVPPPSTRAFLFSNNKLFGQIPP--SICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDA 351 (615)
Q Consensus 274 i~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~ 351 (615)
....+++|++|++++|.+. .+|. .+..+++|+.|++++|.+.+.+| .+..+. +|+.|++++|.+. .+|..
T Consensus 300 ----~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~ 371 (636)
T 4eco_A 300 ----DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPAN 371 (636)
T ss_dssp ----HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTT
T ss_pred ----ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHh
Confidence 0001255666666666666 6777 88899999999999999887888 666654 8999999999888 67766
Q ss_pred hhcCCCc-ccEEEcCCCcccCCCCcccCCCC--CccEEEcCCCcCCccCccccC-------CCCCCcEEEccCCcccCcc
Q 045619 352 FANGSCS-LRSLDLNSNKLEGPFPRYLADCD--ELEVVNVGNNMIGDTFPSWLG-------CLPGLNILVLRSNRFYGPL 421 (615)
Q Consensus 352 ~~~~~~~-L~~L~l~~~~i~~~~~~~~~~l~--~L~~L~l~~n~i~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~ 421 (615)
+... ++ |++|++++|.++ .+|..+..+. +|++|++++|.+++..|..+. .+++|++|++++|.+..
T Consensus 372 l~~l-~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-- 447 (636)
T 4eco_A 372 FCGF-TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-- 447 (636)
T ss_dssp SEEE-CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS--
T ss_pred hhhh-cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc--
Confidence 6554 66 999999999988 6777776654 899999999999888888887 77888889998888874
Q ss_pred CCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccc
Q 045619 422 CESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILT 501 (615)
Q Consensus 422 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 501 (615)
.....+..+++|+.|++++|.+. .+|...+..... ....+++|+
T Consensus 448 lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~-----------------------------------~~~~l~~L~ 491 (636)
T 4eco_A 448 FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE-----------------------------------NFKNTYLLT 491 (636)
T ss_dssp CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE-----------------------------------ECTTGGGCC
T ss_pred CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc-----------------------------------cccccCCcc
Confidence 22233355788888888888887 455332221100 001245899
Q ss_pred eEeCCCCccCccCCcccc--CCCCCcEEeCcCCcCcccCCccccCCCCCCEEeC------CCCcccccchhhhhhcCcCC
Q 045619 502 TIDLSSNQFQAEIPRVLG--DFKSLIVLNLSHNGLTGSIPVSFANMTALESLDL------SSNKLHGRILEQLLSVTALA 573 (615)
Q Consensus 502 ~L~l~~~~i~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l------~~n~~~~~~~~~~~~l~~L~ 573 (615)
.|++++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|+
T Consensus 492 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 492 SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC
Confidence 9999999999 6777776 99999999999999996 8999999999999999 45778889999999999999
Q ss_pred eEEcccccceecCCCCCCCCCccCcccCCCcCccCC
Q 045619 574 SLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGE 609 (615)
Q Consensus 574 ~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~ 609 (615)
+|++++|++ +.+|.... ++++.|.+.+|+..|-.
T Consensus 570 ~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 570 QLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNISID 603 (636)
T ss_dssp EEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCEEE
T ss_pred EEECCCCcC-CccCHhHh-CcCCEEECcCCCCcccc
Confidence 999999999 79998755 89999999999988744
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.7e-39 Score=342.48 Aligned_cols=443 Identities=18% Similarity=0.163 Sum_probs=215.0
Q ss_pred EEEecCCCCceeecCCcccccccccccccccccccCCCCC-hhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecC
Q 045619 26 IGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQIS-PEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLF 104 (615)
Q Consensus 26 ~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 104 (615)
++++++++.+++ +|. .+. .++++|+++++.+..++ .+|..+++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 34 ~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 677777777764 222 111 34444444444444333 244445555555555555444444444445555555555
Q ss_pred CCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCccC-CCccccCCCCCcEEEcccCC
Q 045619 105 DCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGN-FPREIFQLPHLQELHLSSNK 183 (615)
Q Consensus 105 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~ 183 (615)
+|.++ .+|.. .+ ++|++|++++|.+... .|..++++++|++|++++|+
T Consensus 109 ~N~l~----~lp~~--~l-------------------------~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 109 HNRLQ----NISCC--PM-------------------------ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp TSCCC----EECSC--CC-------------------------TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCcCC----ccCcc--cc-------------------------ccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 54443 22222 34 4455555555544431 22444455555555555543
Q ss_pred CccccCCCCCCCCCc--cEEECCCCCc--ccc-ccCCCCc----CEEecCCcccCcccccccccCCCcCcEEEccCCccc
Q 045619 184 YLTGYLPESNWSTSL--RELDLSFSNF--TGF-LRNSEEL----EFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLT 254 (615)
Q Consensus 184 ~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~-~~~~~~L----~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 254 (615)
+.... +...++| ++|++++|.+ ... ...+..+ -.+++++|.+.+.++...+..+++|+.+++++|+..
T Consensus 158 l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 234 (562)
T 3a79_B 158 FRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234 (562)
T ss_dssp CCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT
T ss_pred cccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccc
Confidence 33211 1112222 4555544444 211 1111111 144666666665555555566777777777776411
Q ss_pred --CcC-----CCCCCCCcEEEcCCCccccccCC------CCCCceEEEccCCcccccCcccc-----cCCCccceeeccc
Q 045619 255 --QIE-----QHPWKNITVLNLRNNTIQGTILV------PPPSTRAFLFSNNKLFGQIPPSI-----CSLSSLEYLSLSH 316 (615)
Q Consensus 255 --~~~-----~~~~~~L~~L~l~~~~i~~~~~~------~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~ 316 (615)
.+. ....++++.+++.++.+.+.... ..++|++|++++|.+.+.+|..+ ..++.|+.+++..
T Consensus 235 ~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~ 314 (562)
T 3a79_B 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314 (562)
T ss_dssp HHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEE
T ss_pred cchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccc
Confidence 000 02345555665555544322110 12356666666666655555544 3344444444444
Q ss_pred cccCCCCC-CChhcc--ccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcC
Q 045619 317 NNLNGTIP-PCLGNF--STQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMI 393 (615)
Q Consensus 317 ~~l~~~~~-~~~~~~--~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i 393 (615)
+.+ .+| ..++.. ..++++|++++|.+.... +...+++|++|++++|.+++..+..+.++++|++|++++|.+
T Consensus 315 ~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 389 (562)
T 3a79_B 315 QVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389 (562)
T ss_dssp CCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC
T ss_pred cee--ecChhhhhhhhccCcceEEEccCCCccccc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc
Confidence 433 223 111111 024666666666554211 112235666666666666655555566666666666666666
Q ss_pred Ccc--CccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccc
Q 045619 394 GDT--FPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYM 471 (615)
Q Consensus 394 ~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 471 (615)
++. .|..+..+++|+.|++++|.+....+.. .+..+++|+.|++++|.+++..+..+
T Consensus 390 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l-------------------- 448 (562)
T 3a79_B 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR-TCAWAESILVLNLSSNMLTGSVFRCL-------------------- 448 (562)
T ss_dssp CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-CCCCCTTCCEEECCSSCCCGGGGSSC--------------------
T ss_pred CCcccchhhhcCCCCCCEEECCCCcCCCccChh-hhcCcccCCEEECCCCCCCcchhhhh--------------------
Confidence 542 2344556666666666666655422221 23445556666666555543222110
Q ss_pred cccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCcc-ccCCCCCCE
Q 045619 472 QREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVS-FANMTALES 550 (615)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~ 550 (615)
.++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. |..+++|+.
T Consensus 449 -------------------------~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 449 -------------------------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQY 501 (562)
T ss_dssp -------------------------CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCC
T ss_pred -------------------------cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCE
Confidence 134666666666665 34444446666666666666666 34433 566666666
Q ss_pred EeCCCCcccc
Q 045619 551 LDLSSNKLHG 560 (615)
Q Consensus 551 L~l~~n~~~~ 560 (615)
|++++|++.+
T Consensus 502 L~l~~N~~~c 511 (562)
T 3a79_B 502 IWLHDNPWDC 511 (562)
T ss_dssp EECCSCCBCC
T ss_pred EEecCCCcCC
Confidence 6666666654
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.8e-37 Score=336.54 Aligned_cols=327 Identities=19% Similarity=0.196 Sum_probs=209.8
Q ss_pred ccCCCCcCEEecCCcc-cCc-cccccc------ccCCCcCcEEEccCCcccCcCC----CCCCCCcEEEcCCCccccccC
Q 045619 212 LRNSEELEFLDLSNNR-IHG-RISKSD------SQGWKSLTYLDISNNFLTQIEQ----HPWKNITVLNLRNNTIQGTIL 279 (615)
Q Consensus 212 ~~~~~~L~~L~l~~~~-~~~-~~~~~~------~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~i~~~~~ 279 (615)
+..+++|++|++++|+ +++ .+|..+ +..+++|+.|++++|.++.++. ..+++|+.|++++|.
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~------ 584 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK------ 584 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC------
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC------
Confidence 4445556666666555 543 333322 1233466666666665554332 223333333333333
Q ss_pred CCCCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccC-CcEEEccCCcccccCchhhhcC-CC
Q 045619 280 VPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQ-LTILHLNNNKLQGRIPDAFANG-SC 357 (615)
Q Consensus 280 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~-L~~L~L~~~~i~~~~~~~~~~~-~~ 357 (615)
+. .+| .+..+++|+.|++++|.+. .+|..+..+. + |+.|++++|.+. .+|..+... .+
T Consensus 585 ---------------l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~L~-~lp~~~~~~~~~ 644 (876)
T 4ecn_A 585 ---------------VR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFT-DQVEGLGFSHNKLK-YIPNIFNAKSVY 644 (876)
T ss_dssp ---------------CC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEEC-TTCCEEECCSSCCC-SCCSCCCTTCSS
T ss_pred ---------------cc-cch-hhcCCCcceEEECcCCccc-cchHHHhhcc-ccCCEEECcCCCCC-cCchhhhccccC
Confidence 33 344 5666777777777777776 6776666665 5 777777777776 555444322 13
Q ss_pred cccEEEcCCCcccCCCCccc---C--CCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCcc-----C
Q 045619 358 SLRSLDLNSNKLEGPFPRYL---A--DCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNI-----M 427 (615)
Q Consensus 358 ~L~~L~l~~~~i~~~~~~~~---~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~ 427 (615)
+|+.|++++|.+.+..|... . .+++|+.|++++|.++...+..+..+++|+.|++++|++......... .
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 47788888877765444222 2 235788888888888754444455788888888888887732221111 1
Q ss_pred CCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCC
Q 045619 428 FPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSS 507 (615)
Q Consensus 428 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 507 (615)
..+++|+.|++++|.+. .+|..+.. ..+++|+.|++++
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~-----------------------------------------~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDDFRA-----------------------------------------TTLPYLSNMDVSY 762 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGGGST-----------------------------------------TTCTTCCEEECCS
T ss_pred cccCCccEEECCCCCCc-cchHHhhh-----------------------------------------ccCCCcCEEEeCC
Confidence 23448999999999888 55543210 1257799999999
Q ss_pred CccCccCCccccCCCCCcEEeCcC------CcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEccccc
Q 045619 508 NQFQAEIPRVLGDFKSLIVLNLSH------NGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNR 581 (615)
Q Consensus 508 ~~i~~~~~~~l~~l~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 581 (615)
|++.+ +|..+..+++|++|+|++ |++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|++++|+
T Consensus 763 N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 763 NCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp SCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred CCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 99996 688889999999999976 778888999999999999999999999 46777654 699999999999
Q ss_pred ceecCCCCCC---CCCccCcccCCCcCccCCC
Q 045619 582 LWGRIPRGNQ---FNTFENDSYIGNIHLCGEP 610 (615)
Q Consensus 582 i~~~~p~~~~---~~~~~~~~~~~~~~~~~~~ 610 (615)
+...-+..+. ......+.+...+.+++||
T Consensus 839 l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 839 NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp TCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred CCccChHHccccccchheeecCCCccccCCCC
Confidence 9765444322 1123333334444445665
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.9e-36 Score=319.47 Aligned_cols=431 Identities=18% Similarity=0.176 Sum_probs=302.3
Q ss_pred CCcEEEEecCCCCceeecCCcccccccccccccccccccCCCC-ChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcE
Q 045619 22 TGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQI-SPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTH 100 (615)
Q Consensus 22 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l-~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 100 (615)
++++++|++++|.+++..+. ++..+++|++|+++++.+..+ |+.|..+++|++|++++|.++ .+|.. .+++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 125 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH 125 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred CCCcCEEECCCCCccccChh--hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence 46899999999999876555 888999999999999887766 677999999999999999998 55654 8999999
Q ss_pred EecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccc--cEEEcCCCCC--ccCCCccccCCCC-Cc
Q 045619 101 LDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTI--TVLDLSGTGM--RGNFPREIFQLPH-LQ 175 (615)
Q Consensus 101 L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L--~~L~l~~~~~--~~~~~~~l~~l~~-L~ 175 (615)
|++++|++.. ..+|..+.++++|++|++++|.+... .+..+ ++| ++|++++|.+ .+..+..+..+.. .-
T Consensus 126 L~Ls~N~l~~--l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l 199 (562)
T 3a79_B 126 LDLSFNDFDV--LPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPV-AHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199 (562)
T ss_dssp EECCSSCCSB--CCCCGGGGGCTTCCEEEEECSBCCTT---TTGGG-TTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred EECCCCCccc--cCchHhhcccCcccEEecCCCccccC---chhhh-hhceeeEEEeecccccccccCcccccccCcceE
Confidence 9999999862 13457889999999999999988753 33333 555 9999999988 6666666666541 11
Q ss_pred EEEcccCCCccccCCCCCCCCCccEEECCCCCccccccCCCCcCEEecCCccc-----CcccccccccCCCcCcEEEccC
Q 045619 176 ELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGFLRNSEELEFLDLSNNRI-----HGRISKSDSQGWKSLTYLDISN 250 (615)
Q Consensus 176 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~-----~~~~~~~~~~~l~~L~~L~l~~ 250 (615)
.+++++|.+.. .... ..+..+++|+.+++++|.. .+.+ ..+..+++++.+++.+
T Consensus 200 ~l~l~~n~~~~-~~~~------------------~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 200 HLVFHPNSLFS-VQVN------------------MSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRGPTLLNVTLQH 258 (562)
T ss_dssp EEEECSSSCCC-CCCE------------------EEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSCSSCEEEEEEE
T ss_pred EEEecCccchh-hhhh------------------hcccccceEEEecccccccccchHHHHH--HHHhccCcceEEEecC
Confidence 34555553322 1111 0122334444455444421 1000 1124455555555555
Q ss_pred CcccCcCC------CCCCCCcEEEcCCCccccccCCCC-----CCceEEEccCCcccc-cCc-ccccC---CCccceeec
Q 045619 251 NFLTQIEQ------HPWKNITVLNLRNNTIQGTILVPP-----PSTRAFLFSNNKLFG-QIP-PSICS---LSSLEYLSL 314 (615)
Q Consensus 251 ~~~~~~~~------~~~~~L~~L~l~~~~i~~~~~~~~-----~~L~~L~l~~~~~~~-~~~-~~l~~---~~~L~~L~l 314 (615)
+.+..... ...++|++|++++|.+.+..+... ++++.|.+.+..... .+| .++.. ..+|+.|++
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 44332111 112367777777777665554432 555555554433321 233 22222 367999999
Q ss_pred cccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCC--CCcccCCCCCccEEEcCCCc
Q 045619 315 SHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGP--FPRYLADCDELEVVNVGNNM 392 (615)
Q Consensus 315 ~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~n~ 392 (615)
++|.+. ..+ .....++|++|++++|.+.+..+..+... ++|++|++++|.+++. .+..+.++++|++|++++|.
T Consensus 339 ~~n~~~-~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 339 SDTPFI-HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp ESSCCC-CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSC-SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred cCCCcc-ccc--CccCCCCceEEECCCCccccchhhhhccc-CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 999886 322 11223589999999999997677666544 8999999999999863 34678999999999999999
Q ss_pred CCc-cCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccc
Q 045619 393 IGD-TFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYM 471 (615)
Q Consensus 393 i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 471 (615)
+++ ..+..+..+++|++|++++|++.+..+... .++|+.|++++|.+. .+|..++
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~~L~~L~L~~N~l~-~ip~~~~------------------- 470 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL----PPKVKVLDLHNNRIM-SIPKDVT------------------- 470 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC----CTTCSEEECCSSCCC-CCCTTTT-------------------
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhh----cCcCCEEECCCCcCc-ccChhhc-------------------
Confidence 988 444568899999999999999876443321 179999999999988 4554321
Q ss_pred cccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcc
Q 045619 472 QREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTG 536 (615)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 536 (615)
.+++|++|++++|++++..+..+..+++|++|++++|.+..
T Consensus 471 ------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 471 ------------------------HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp ------------------------SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred ------------------------CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 25679999999999995444459999999999999999874
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-35 Score=306.85 Aligned_cols=280 Identities=24% Similarity=0.296 Sum_probs=140.5
Q ss_pred CCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccc
Q 045619 71 LKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTI 150 (615)
Q Consensus 71 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L 150 (615)
.++|++|++++|.+ +.+|.+++++++|++|++++|.+. +.+|..++++.+|+.+++.+|.. ..+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~---~~~p~~~~~l~~L~~l~l~~c~~------------~~l 73 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWE---RNAPPGNGEQREMAVSRLRDCLD------------RQA 73 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHH---HTSCTTSCCCHHHHHHHHHHHHH------------HTC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCccc---ccCCcccccchhcchhhhhhhhc------------cCC
Confidence 46677777777777 466667777777777777777665 55666666666666555554421 456
Q ss_pred cEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCccccccCCCCcCEEecCCcccCc
Q 045619 151 TVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGFLRNSEELEFLDLSNNRIHG 230 (615)
Q Consensus 151 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 230 (615)
++|++++|.+.+ +|. -.++|++|++++|.+.. ++. ..++|++|++++|.+.......++|++|++++|.+.
T Consensus 74 ~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~--lp~--~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~- 144 (454)
T 1jl5_A 74 HELELNNLGLSS-LPE---LPPHLESLVASCNSLTE--LPE--LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE- 144 (454)
T ss_dssp SEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSS--CCC--CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-
T ss_pred CEEEecCCcccc-CCC---CcCCCCEEEccCCcCCc--ccc--ccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC-
Confidence 667777766653 222 13567777777765443 222 225677777777766654333468888888888887
Q ss_pred ccccccccCCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCcccccc-CCCCCCceEEEccCCcccccCcccccCCCcc
Q 045619 231 RISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTI-LVPPPSTRAFLFSNNKLFGQIPPSICSLSSL 309 (615)
Q Consensus 231 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 309 (615)
.++ . +..+++|++|++++|+++.++. ..++|++|++++|.+.+.. +..+++|++|++++|.+.+ +|.. .++|
T Consensus 145 ~lp-~-~~~l~~L~~L~l~~N~l~~lp~-~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L 217 (454)
T 1jl5_A 145 KLP-E-LQNSSFLKIIDVDNNSLKKLPD-LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDL---PLSL 217 (454)
T ss_dssp SCC-C-CTTCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCC---CTTC
T ss_pred CCc-c-cCCCCCCCEEECCCCcCcccCC-CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCC---cCcc
Confidence 355 2 5778888888888888776543 3356777777666665421 1124445555555554442 2211 1345
Q ss_pred ceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcC
Q 045619 310 EYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVG 389 (615)
Q Consensus 310 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 389 (615)
+.|++++|.+. .+|. +..+ ++|++|++++|.+.+ +|.. .++|++|++++|.+++ +|.. .++|++|+++
T Consensus 218 ~~L~l~~n~l~-~lp~-~~~l-~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls 285 (454)
T 1jl5_A 218 ESIVAGNNILE-ELPE-LQNL-PFLTTIYADNNLLKT-LPDL----PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVS 285 (454)
T ss_dssp CEEECCSSCCS-SCCC-CTTC-TTCCEEECCSSCCSS-CCSC----CTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred cEEECcCCcCC-cccc-cCCC-CCCCEEECCCCcCCc-cccc----ccccCEEECCCCcccc-cCcc---cCcCCEEECc
Confidence 55555555544 4442 3322 245555555554442 2211 1345555555555442 2221 2445555555
Q ss_pred CCcCC
Q 045619 390 NNMIG 394 (615)
Q Consensus 390 ~n~i~ 394 (615)
+|.++
T Consensus 286 ~N~l~ 290 (454)
T 1jl5_A 286 ENIFS 290 (454)
T ss_dssp SSCCS
T ss_pred CCccC
Confidence 55443
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-33 Score=308.64 Aligned_cols=524 Identities=19% Similarity=0.161 Sum_probs=380.4
Q ss_pred CCCcEEEEecCCCCceeecCCcccccccccccccccccccCCCCCh-hhhcCCCCceeeCCCCccCCCCchhhhcCCCCc
Q 045619 21 VTGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISP-EFLRLKELTYLNLSYTRFSGLLPQEISHMSKLT 99 (615)
Q Consensus 21 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 99 (615)
.+..+++|+|++|.+++..+. +|.++++|++|+++++.+..+|+ +|.++++|++|+|++|.+++..+.+|.++++|+
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCcCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 356899999999999887665 88999999999999998887764 699999999999999999977778899999999
Q ss_pred EEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCC-chhhhcccccccEEEcCCCCCccCCCccccCCCC----C
Q 045619 100 HLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIE-PFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPH----L 174 (615)
Q Consensus 100 ~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~----L 174 (615)
+|++++|++. ...+..++++++|++|++++|.+.... +..+..+ +.|++|++++|++.+..+..+..+.+ .
T Consensus 128 ~L~Ls~N~l~---~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 128 KLVAVETNLA---SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp EEECTTSCCC---CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred EEECCCCcCC---CCChhhhhcCcccCeeccccCccccCCCchhhccc-hhhhhhcccCccccccccccccchhhhhhhh
Confidence 9999999986 333456899999999999999987654 4555666 99999999999998777777665443 3
Q ss_pred cEEEcccCCCccccCCCCCCCCCccEEECCCCCccc-----cccCCCCcCEEe---------------------------
Q 045619 175 QELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTG-----FLRNSEELEFLD--------------------------- 222 (615)
Q Consensus 175 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~L~~L~--------------------------- 222 (615)
..++++.|.+.... +.......+..+++.++.... .+..+..++...
T Consensus 204 ~~~~ls~n~l~~i~-~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQ-PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CEEECTTCCCCEEC-TTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhcccCcccccC-cccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 46788888655433 223333455666666553221 122222222222
Q ss_pred ---cCCcccCc--ccccccccCCCcCcEEEccCCcccCcCC-CCCCCCcEEEcCCCccccccCCCCCCceEEEccCCccc
Q 045619 223 ---LSNNRIHG--RISKSDSQGWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLF 296 (615)
Q Consensus 223 ---l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~ 296 (615)
+..+.... ......+....+++.+.+.++.+..+.. .....++.|++.+|.+.+.....++.++.+.+.++...
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCC
Confidence 21111110 0011123445678888888887766654 45568999999999988877777899999999998876
Q ss_pred ccCcccccCCCccceeeccccccCC--CCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCC-
Q 045619 297 GQIPPSICSLSSLEYLSLSHNNLNG--TIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPF- 373 (615)
Q Consensus 297 ~~~~~~l~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~- 373 (615)
.. .....+++|+.+++++|.+.. ..+...... .+++.+++..+.+.. .+..+.. +++|+.+++..+......
T Consensus 363 ~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~~~~~~~~~-~~~~~~~-l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 363 NA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-ISLKYLDLSFNGVIT-MSSNFLG-LEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp CB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSC-SCCCEEECCSCSEEE-ECSCCTT-CTTCCEEECTTSEEESTTS
T ss_pred CC--cccccccccccchhhccccccccccccchhhh-hhhhhhhcccccccc-ccccccc-cccccchhhhhcccccccc
Confidence 43 334568999999999998752 234444444 489999999988763 3334433 489999999988766443
Q ss_pred CcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHh
Q 045619 374 PRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFV 453 (615)
Q Consensus 374 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 453 (615)
...+..+..++.+++++|.+....+..+..++.|+.|++++|........ ..+..+++|+.|++++|.+.+..|..+
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N~L~~l~~~~f-- 514 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAF-- 514 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTT--
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc-hhhhhccccCEEECCCCccCCcChHHH--
Confidence 35678899999999999999999999999999999999999986543322 345778899999999998886555331
Q ss_pred chhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCc
Q 045619 454 SLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNG 533 (615)
Q Consensus 454 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~ 533 (615)
..+++|++|++++|++++..+..|..+++|++|+|++|+
T Consensus 515 -----------------------------------------~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 515 -----------------------------------------NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp -----------------------------------------TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred -----------------------------------------cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 225678889999999988888888999999999999999
Q ss_pred CcccCCccccCC-CCCCEEeCCCCccccc-chhhh-hhcCcCCeEEcccccceecCCCCCCCCCccCccc
Q 045619 534 LTGSIPVSFANM-TALESLDLSSNKLHGR-ILEQL-LSVTALASLNLSYNRLWGRIPRGNQFNTFENDSY 600 (615)
Q Consensus 534 l~~~~~~~~~~l-~~L~~L~l~~n~~~~~-~~~~~-~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~ 600 (615)
+++..|..|..+ ++|+.|+|++|.+.+. ....| ..+..-.........+....|+......+..+++
T Consensus 554 l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~~ 623 (635)
T 4g8a_A 554 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNI 623 (635)
T ss_dssp CCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCCC
T ss_pred CCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeecc
Confidence 988888888887 6899999999988652 11222 2222222222223345556677666666666643
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-33 Score=292.56 Aligned_cols=408 Identities=22% Similarity=0.266 Sum_probs=203.7
Q ss_pred cccccccccccccCCCCChhhhcCCCCceeeCCCCccCCCCchhhhcCCCC-------------cEEecCCCcCccccCc
Q 045619 48 LLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKL-------------THLDLFDCDMTIEQKS 114 (615)
Q Consensus 48 ~~~L~~L~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L-------------~~L~L~~~~~~~~~~~ 114 (615)
.++|+++.+++...+.+|++++++++|++|++++|.+.+..|..++++.+| ++|++++|.++ .
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~----~ 85 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS----S 85 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS----C
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc----c
Confidence 355566666555555677778888888888888887777777777776654 66666666654 2
Q ss_pred chhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCC
Q 045619 115 FDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNW 194 (615)
Q Consensus 115 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 194 (615)
+|. -.++|++|++++|.+... +. ..++|++|++++|.+.+. +.. .++|++|++++|++.. ++.+..
T Consensus 86 lp~---~~~~L~~L~l~~n~l~~l-p~----~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~--lp~~~~ 151 (454)
T 1jl5_A 86 LPE---LPPHLESLVASCNSLTEL-PE----LPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK--LPELQN 151 (454)
T ss_dssp CCS---CCTTCSEEECCSSCCSSC-CC----CCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS--CCCCTT
T ss_pred CCC---CcCCCCEEEccCCcCCcc-cc----ccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC--CcccCC
Confidence 222 125666666666665542 21 125666666666665531 111 1466666666664443 334555
Q ss_pred CCCccEEECCCCCccccccCCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCcc
Q 045619 195 STSLRELDLSFSNFTGFLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTI 274 (615)
Q Consensus 195 ~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i 274 (615)
+++|++|++++|.+.......++|++|++++|.+.+ ++ .+..+++|+.|++++|+++.++.
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~~---------------- 212 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLPD---------------- 212 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCCC----------------
T ss_pred CCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCCC----------------
Confidence 556666666666555443344566666666666552 33 13555556666665555554322
Q ss_pred ccccCCCCCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhc
Q 045619 275 QGTILVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFAN 354 (615)
Q Consensus 275 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~ 354 (615)
.+++|++|++++|.+. .+| .+..+++|+.|++++|.+. .+|.. .++|+.|++++|.+.+ +|..
T Consensus 213 ------~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~N~l~~-l~~~--- 275 (454)
T 1jl5_A 213 ------LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTD-LPEL--- 275 (454)
T ss_dssp ------CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCSC-CCCC---
T ss_pred ------CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc----ccccCEEECCCCcccc-cCcc---
Confidence 2345666666666665 455 3778888899999888887 45543 2478999999988874 4432
Q ss_pred CCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCC-CCCcEEEccCCcccCccCCCccCCCCCcc
Q 045619 355 GSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCL-PGLNILVLRSNRFYGPLCESNIMFPFQAL 433 (615)
Q Consensus 355 ~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 433 (615)
.++|++|++++|.+++. +. ..++|++|++++|.+++. ..+ ++|++|++++|++.+ .+ ..+++|
T Consensus 276 -~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp-----~~~~~L 339 (454)
T 1jl5_A 276 -PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LP-----ALPPRL 339 (454)
T ss_dssp -CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CC-----CCCTTC
T ss_pred -cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cc-----ccCCcC
Confidence 26889999999888752 11 126888889988888652 223 478888888887765 11 124677
Q ss_pred cEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCc-
Q 045619 434 RIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQA- 512 (615)
Q Consensus 434 ~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~- 512 (615)
+.|++++|.+.. +|. .+++|++|++++|++.+
T Consensus 340 ~~L~L~~N~l~~-lp~----------------------------------------------~l~~L~~L~L~~N~l~~l 372 (454)
T 1jl5_A 340 ERLIASFNHLAE-VPE----------------------------------------------LPQNLKQLHVEYNPLREF 372 (454)
T ss_dssp CEEECCSSCCSC-CCC----------------------------------------------CCTTCCEEECCSSCCSSC
T ss_pred CEEECCCCcccc-ccc----------------------------------------------hhhhccEEECCCCCCCcC
Confidence 777777777662 331 03457777777777765
Q ss_pred -cCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccc--cchhhhhhcCcCCeEEcccccceecCCCC
Q 045619 513 -EIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHG--RILEQLLSVTALASLNLSYNRLWGRIPRG 589 (615)
Q Consensus 513 -~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~i~~~~p~~ 589 (615)
..|..+.. | +.|+..+.+|.. +++|++|++++|++.+ .+| .+++.|.+++|.+.+.+|..
T Consensus 373 ~~ip~~l~~------L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 373 PDIPESVED------L--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp CCCCTTCCE------E--ECCC----------------------------------------------------------
T ss_pred CCChHHHHh------h--hhcccccccccc---cCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccccC
Confidence 34443332 2 234444455542 4788888888888875 333 35677778888887776553
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-33 Score=295.05 Aligned_cols=348 Identities=22% Similarity=0.272 Sum_probs=203.3
Q ss_pred CCccEEECCCCCcccc----ccCCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCC---CCCCCCcEEE
Q 045619 196 TSLRELDLSFSNFTGF----LRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ---HPWKNITVLN 268 (615)
Q Consensus 196 ~~L~~L~l~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~L~~L~ 268 (615)
++|++|++++|.+.+. +..+++|++|++++|.+.+.++...+..+++|++|++++|+++.+.+ ..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6788888888877653 66778888888888877666666666778888888888888777654 3456777777
Q ss_pred cCCCcccccc-----CCCCCCceEEEccCCcccccCccc-ccCCCccceeeccccccCCCCCCChhccc-cCCcEEEccC
Q 045619 269 LRNNTIQGTI-----LVPPPSTRAFLFSNNKLFGQIPPS-ICSLSSLEYLSLSHNNLNGTIPPCLGNFS-TQLTILHLNN 341 (615)
Q Consensus 269 l~~~~i~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~~L~~L~L~~ 341 (615)
+++|.+.+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+. .+++.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 7777766422 333566666666666666554443 55666666666666666544444443321 2556666666
Q ss_pred CcccccCchhhh-------cCCCcccEEEcCCCcccCCCCcccCC---CCCccEEEcCCCcCCccCc----------ccc
Q 045619 342 NKLQGRIPDAFA-------NGSCSLRSLDLNSNKLEGPFPRYLAD---CDELEVVNVGNNMIGDTFP----------SWL 401 (615)
Q Consensus 342 ~~i~~~~~~~~~-------~~~~~L~~L~l~~~~i~~~~~~~~~~---l~~L~~L~l~~n~i~~~~~----------~~~ 401 (615)
|.+.+..+..+. ...++|++|++++|.+++..+..+.. ..+|+.|++++|...+... ..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 655532221110 01245566666666555444333322 2555566665554322111 111
Q ss_pred C--CCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccc
Q 045619 402 G--CLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQ 479 (615)
Q Consensus 402 ~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~ 479 (615)
. ..++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~----------------------------- 318 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKS--VFSHFTDLEQLTLAQNEINKIDDNA----------------------------- 318 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEECTTT-----------------------------
T ss_pred ccccccCceEEEecCccccccchh--hcccCCCCCEEECCCCcccccChhH-----------------------------
Confidence 1 113444445444444432221 1234444444444444444322211
Q ss_pred cceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCccc
Q 045619 480 DSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLH 559 (615)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 559 (615)
+..+++|+.|++++|++.+..+..|+.+++|++|+|++|++++..|..|..+++|++|++++|+++
T Consensus 319 --------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 319 --------------FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp --------------TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred --------------hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 122455777777777776666666777777777777777777666667777777777777777777
Q ss_pred ccchhhhhhcCcCCeEEcccccceecCCC
Q 045619 560 GRILEQLLSVTALASLNLSYNRLWGRIPR 588 (615)
Q Consensus 560 ~~~~~~~~~l~~L~~L~l~~n~i~~~~p~ 588 (615)
...+..|+.+++|++|++++|++.+..|.
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 66666666777777777777777766664
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2e-33 Score=293.69 Aligned_cols=372 Identities=23% Similarity=0.235 Sum_probs=190.3
Q ss_pred CcEEEEecCCCCceeecCCcccccccccccccccccccCC-CC-ChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcE
Q 045619 23 GNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGS-QI-SPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTH 100 (615)
Q Consensus 23 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~-~l-~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 100 (615)
.++++|++++|.+++..+. .+.++++|++|++.+.... .+ +..|..+++|++|++++|.+++..|.+|.++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNET--SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTT--TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChh--HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 4566666666666654333 4445555555555544332 12 334555555555555555555444555555555555
Q ss_pred EecCCCcCccccCcchhh--ccCCCCCCEEecccccCCCCCchh-hhcccccccEEEcCCCCCccCCCccccCC--CCCc
Q 045619 101 LDLFDCDMTIEQKSFDLL--ASNLTKLSVLNLGWADRSLIEPFS-VLNLSSTITVLDLSGTGMRGNFPREIFQL--PHLQ 175 (615)
Q Consensus 101 L~L~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~ 175 (615)
|++++|.+. +..+.. +.++++|++|++++|.+....+.. +..+ ++|++|++++|.+.+..+..+..+ .+|+
T Consensus 108 L~L~~n~l~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 108 LTLTQCNLD---GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM-RRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp EECTTSCCB---THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC-TTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred EeCCCCCCC---ccccCcccccCcccCCEEECCCCccCccCcccccCCC-CcccEEeCCCCcccccChhhhhcccccccc
Confidence 555555543 222222 444555555555555544444433 2233 455555555554444434333332 3444
Q ss_pred EEEcccCCCccccCCCCCCCCCccEEECCCCCccccccCCCCcCEEecCCcccCcccccccccC--CCcCcEEEccCCcc
Q 045619 176 ELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGFLRNSEELEFLDLSNNRIHGRISKSDSQG--WKSLTYLDISNNFL 253 (615)
Q Consensus 176 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~ 253 (615)
.|++++|.+.......... .....+..+++|++|++++|.+.+..+...... .++++.|++++|..
T Consensus 184 ~L~l~~n~l~~~~~~~~~~------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGW------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp EEECTTCBCTTCSTTCTTH------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred ccccccCcccccchhhccc------------cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 4444444222111000000 000002233556666666666654433333211 24555555555543
Q ss_pred cCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCCcccccCccccc--CCCccceeeccccccCCCCCCChhccc
Q 045619 254 TQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIC--SLSSLEYLSLSHNNLNGTIPPCLGNFS 331 (615)
Q Consensus 254 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~ 331 (615)
...... .+ .+....+..+. ..++|+.|++++|.+.+..|..+..+.
T Consensus 252 ~~~~~~-----------~~---------------------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 299 (455)
T 3v47_A 252 MGSSFG-----------HT---------------------NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299 (455)
T ss_dssp TSCCTT-----------CC---------------------SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT
T ss_pred cccccc-----------hh---------------------hhccCcccccccccccCceEEEecCccccccchhhcccCC
Confidence 322110 00 00000111111 235566666666666544444444443
Q ss_pred cCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEE
Q 045619 332 TQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILV 411 (615)
Q Consensus 332 ~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 411 (615)
+|++|++++|.+.+..+..+... ++|++|++++|.+++..+..|.++++|++|++++|.+++..|.++..+++|++|+
T Consensus 300 -~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 300 -DLEQLTLAQNEINKIDDNAFWGL-THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp -TCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred -CCCEEECCCCcccccChhHhcCc-ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 66666666666664444444333 6777777777777666666677777777777777777777777777777777777
Q ss_pred ccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCc
Q 045619 412 LRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLP 448 (615)
Q Consensus 412 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 448 (615)
+++|++.+.. ...+..+++|+.|++++|++.+.+|
T Consensus 378 L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 378 LDTNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCccccCC--HhHhccCCcccEEEccCCCcccCCC
Confidence 7777776522 2234667778888888888877776
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-32 Score=286.03 Aligned_cols=342 Identities=19% Similarity=0.158 Sum_probs=204.0
Q ss_pred CEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCC---CCCCCCcEEEcCCCccccccC---CCCCCceEEEccC
Q 045619 219 EFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLRNNTIQGTIL---VPPPSTRAFLFSN 292 (615)
Q Consensus 219 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~---~~~~~L~~L~l~~ 292 (615)
+.++.++..+. .+|... .++++.|++++|.++.+.+ ..+++|++|++++|.+.+..+ ..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555554 444432 2456666666666666544 334455666666655554322 2245555555555
Q ss_pred CcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCC
Q 045619 293 NKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGP 372 (615)
Q Consensus 293 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 372 (615)
|.+....+..|..+++|++|++++|.+.+..+..+..+. +|++|++++|.+.+..+..+... ++|++|++++|.++..
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTTC-TTCCEEEEESCCCSSC
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhhccCC-CCCCEEECCCCcCccc
Confidence 555544434445555555555555555433333333332 55555555555543333333222 4555555555555544
Q ss_pred CCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHH
Q 045619 373 FPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIF 452 (615)
Q Consensus 373 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 452 (615)
.+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|......+... ....+|+.|++++|.+. .++.
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~-~~~~--- 241 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLT-AVPY--- 241 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCC-SCCH---
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCccc-ccCH---
Confidence 33445555555555555555555444455555555555555554433322221 12225555555555544 2221
Q ss_pred hchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCC
Q 045619 453 VSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHN 532 (615)
Q Consensus 453 ~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n 532 (615)
..+..+++|+.|++++|++.+..+..|..+++|++|+|++|
T Consensus 242 ---------------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 242 ---------------------------------------LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp ---------------------------------------HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred ---------------------------------------HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence 22344677999999999999888888999999999999999
Q ss_pred cCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCCCCCCCccCcccCCCcCccCCCC
Q 045619 533 GLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 611 (615)
Q Consensus 533 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 611 (615)
++++..|..|..+++|++|+|++|+++...+..|..+++|++|++++|++...-+......+...+.+.++...|..|.
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 9998888899999999999999999998888888999999999999999976543221122334466677788887664
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.9e-31 Score=275.73 Aligned_cols=343 Identities=25% Similarity=0.327 Sum_probs=199.7
Q ss_pred ccccccccccccccCCCCChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCC
Q 045619 47 HLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLS 126 (615)
Q Consensus 47 ~~~~L~~L~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~ 126 (615)
.+.+++.|++.+.....+|. +..+++|++|++++|.+++..+ +.++++|++|++++|++. .++. +.++++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~----~~~~-~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA----DITP-LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC----CCGG-GTTCTTCC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc----cChh-hcCCCCCC
Confidence 45667777777666665653 6777777777777777774433 777777777777777764 2333 67777777
Q ss_pred EEecccccCCCCCchhhhcccccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCC
Q 045619 127 VLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFS 206 (615)
Q Consensus 127 ~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 206 (615)
+|++++|.+....+ +..+ ++|++|++++|.+.+. ..+..+++|++|++.++ ... ...+..+++|++|++++|
T Consensus 116 ~L~L~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~~-~~~--~~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNL-TNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQ-VTD--LKPLANLTTLERLDISSN 187 (466)
T ss_dssp EEECCSSCCCCCGG--GTTC-TTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEES-CCC--CGGGTTCTTCCEEECCSS
T ss_pred EEECCCCCCCCChH--HcCC-CCCCEEECCCCccCCC--hhhccCCcccEeecCCc-ccC--chhhccCCCCCEEECcCC
Confidence 77777776665533 5555 7777777777776632 34677777777777543 221 223445566666666666
Q ss_pred Ccccc--ccCCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCC-CCCCCCcEEEcCCCccccccCCCCC
Q 045619 207 NFTGF--LRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLRNNTIQGTILVPPP 283 (615)
Q Consensus 207 ~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~ 283 (615)
.+... +..+++|++|++++|.+.+..+ +..+++|+.|++++|.++.++. ..+++|+.|++++|
T Consensus 188 ~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n----------- 253 (466)
T 1o6v_A 188 KVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN----------- 253 (466)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-----------
T ss_pred cCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC-----------
Confidence 55542 4555666666666666553222 2445666666666665554432 33444555555444
Q ss_pred CceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEE
Q 045619 284 STRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLD 363 (615)
Q Consensus 284 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~ 363 (615)
.+.+..+ +..+++|+.|++++|.+.+ .+. +..+ ++|+.|++++|.+.+..+ +. .+++|++|+
T Consensus 254 ----------~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l-~~L~~L~L~~n~l~~~~~--~~-~l~~L~~L~ 315 (466)
T 1o6v_A 254 ----------QISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGL-TALTNLELNENQLEDISP--IS-NLKNLTYLT 315 (466)
T ss_dssp ----------CCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTC-TTCSEEECCSSCCSCCGG--GG-GCTTCSEEE
T ss_pred ----------ccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCC-CccCeEEcCCCcccCchh--hc-CCCCCCEEE
Confidence 4443222 4555666666666665552 222 3333 356666666666553222 22 235666666
Q ss_pred cCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcC
Q 045619 364 LNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEF 443 (615)
Q Consensus 364 l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 443 (615)
+++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++.+..+ +..+++|+.|++++|.+
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG----GTTCTTCCEEECCCEEE
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch----hhcCCCCCEEeccCCcc
Confidence 66666654433 45566666666666666544 345666666666666666654333 35556666666666666
Q ss_pred cC
Q 045619 444 TG 445 (615)
Q Consensus 444 ~~ 445 (615)
++
T Consensus 388 ~~ 389 (466)
T 1o6v_A 388 TN 389 (466)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.5e-31 Score=277.10 Aligned_cols=353 Identities=19% Similarity=0.200 Sum_probs=217.5
Q ss_pred CCCCCchhhhcccccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCcccc-cc
Q 045619 135 RSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGF-LR 213 (615)
Q Consensus 135 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~ 213 (615)
.....+..+..+ ++|++|++++|.+.+. | .+..+++|++|++++|.+... + +..+++|++|++++|.+.+. +.
T Consensus 30 ~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~--~-~~~l~~L~~L~Ls~N~l~~~~~~ 103 (457)
T 3bz5_A 30 MQATDTISEEQL-ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL--D-LSQNTNLTYLACDSNKLTNLDVT 103 (457)
T ss_dssp CCTTSEEEHHHH-TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC--C-CTTCTTCSEEECCSSCCSCCCCT
T ss_pred cCcccccChhHc-CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE--c-cccCCCCCEEECcCCCCceeecC
Confidence 334445566666 8899999999988853 4 688889999999999865542 2 45556667777666665543 45
Q ss_pred CCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCC
Q 045619 214 NSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNN 293 (615)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~ 293 (615)
.+++|++|++++|.+.+ ++ +..+++|++|++++|+++.++...+++|+.|++++|.
T Consensus 104 ~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~-------------------- 159 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNK-------------------- 159 (457)
T ss_dssp TCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCS--------------------
T ss_pred CCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCC--------------------
Confidence 55666666666666652 22 3555666666666666655544455555555555553
Q ss_pred cccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCC
Q 045619 294 KLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPF 373 (615)
Q Consensus 294 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 373 (615)
..+.. .+..+++|+.|++++|.+. .+| +..+ ++|+.|++++|.+.+. + + ..+++|++|++++|.+++ +
T Consensus 160 -~~~~~--~~~~l~~L~~L~ls~n~l~-~l~--l~~l-~~L~~L~l~~N~l~~~-~--l-~~l~~L~~L~Ls~N~l~~-i 227 (457)
T 3bz5_A 160 -KITKL--DVTPQTQLTTLDCSFNKIT-ELD--VSQN-KLLNRLNCDTNNITKL-D--L-NQNIQLTFLDCSSNKLTE-I 227 (457)
T ss_dssp -CCCCC--CCTTCTTCCEEECCSSCCC-CCC--CTTC-TTCCEEECCSSCCSCC-C--C-TTCTTCSEEECCSSCCSC-C
T ss_pred -ccccc--ccccCCcCCEEECCCCccc-eec--cccC-CCCCEEECcCCcCCee-c--c-ccCCCCCEEECcCCcccc-c
Confidence 22222 2344555555555555554 233 2222 2555555555555432 1 2 122555556666555554 2
Q ss_pred CcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEE----------EccCCcccCccCCCccCCCCCcccEEEccCCcC
Q 045619 374 PRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNIL----------VLRSNRFYGPLCESNIMFPFQALRIIDLSHNEF 443 (615)
Q Consensus 374 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L----------~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 443 (615)
| +..+++|++|++++|.+++..+ ..+++|+.| ++++|...+..+ ...+++|+.|++++|..
T Consensus 228 p--~~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp C--CTTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTT
T ss_pred C--ccccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcc
Confidence 2 4555556666666665554432 233344444 444444333222 24566777777777766
Q ss_pred cCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCC
Q 045619 444 TGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKS 523 (615)
Q Consensus 444 ~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~ 523 (615)
.+.+|. ..+.|+.+++++ +++|+.|++++|++++. .++++++
T Consensus 299 l~~l~~----~~~~L~~L~l~~-------------------------------~~~L~~L~L~~N~l~~l---~l~~l~~ 340 (457)
T 3bz5_A 299 LYLLDC----QAAGITELDLSQ-------------------------------NPKLVYLYLNNTELTEL---DVSHNTK 340 (457)
T ss_dssp CCEEEC----TTCCCSCCCCTT-------------------------------CTTCCEEECTTCCCSCC---CCTTCTT
T ss_pred cceecc----CCCcceEechhh-------------------------------cccCCEEECCCCccccc---ccccCCc
Confidence 655552 234455554433 47799999999999874 3889999
Q ss_pred CcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCC
Q 045619 524 LIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRG 589 (615)
Q Consensus 524 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~ 589 (615)
|+.|++++|++++ +++|+.|++++|.+.+. ..+.+|+.+++++|.+.+.||+.
T Consensus 341 L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 341 LKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 9999999999874 35677788888888765 35678999999999999999985
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.1e-31 Score=274.50 Aligned_cols=341 Identities=24% Similarity=0.312 Sum_probs=222.9
Q ss_pred ccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCcccc--ccCCCCcCEEecCC
Q 045619 148 STITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGF--LRNSEELEFLDLSN 225 (615)
Q Consensus 148 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~L~~L~l~~ 225 (615)
+++++|++.++.+.. ++ .+..+++|++|++++|.+.... .+..+++|++|++++|.+... +..+++|++|++++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 121 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCch--hhhccccCCEEECCCCccccChhhcCCCCCCEEECCC
Confidence 788999998888874 33 4778889999999888655432 255667777777777666543 55666677777776
Q ss_pred cccCcccccccccCCCcCcEEEccCCcccCcCC-CCCCCCcEEEcCCCccccccCCCCCCceEEEccCCcccccCccccc
Q 045619 226 NRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIC 304 (615)
Q Consensus 226 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 304 (615)
|.+.+ ++. +..+++|++|++++|.+..++. ..+ ++|+++.+.+ .+... ..+.
T Consensus 122 n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l---------------------~~L~~L~l~~-~~~~~--~~~~ 174 (466)
T 1o6v_A 122 NQITD-IDP--LKNLTNLNRLELSSNTISDISALSGL---------------------TSLQQLSFGN-QVTDL--KPLA 174 (466)
T ss_dssp SCCCC-CGG--GTTCTTCSEEEEEEEEECCCGGGTTC---------------------TTCSEEEEEE-SCCCC--GGGT
T ss_pred CCCCC-ChH--HcCCCCCCEEECCCCccCCChhhccC---------------------CcccEeecCC-cccCc--hhhc
Confidence 66652 222 4566666666666666555432 333 4444444432 22211 2366
Q ss_pred CCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCcc
Q 045619 305 SLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384 (615)
Q Consensus 305 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 384 (615)
.+++|+.|++++|.+. .++ .+..+ ++|++|++++|.+.+..+ +. .+++|++|++++|.+++. ..+..+++|+
T Consensus 175 ~l~~L~~L~l~~n~l~-~~~-~l~~l-~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 246 (466)
T 1o6v_A 175 NLTTLERLDISSNKVS-DIS-VLAKL-TNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKDI--GTLASLTNLT 246 (466)
T ss_dssp TCTTCCEEECCSSCCC-CCG-GGGGC-TTCSEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred cCCCCCEEECcCCcCC-CCh-hhccC-CCCCEEEecCCccccccc--cc-ccCCCCEEECCCCCcccc--hhhhcCCCCC
Confidence 6777777777777765 332 23333 367777777777764433 22 236777777777777643 3566677777
Q ss_pred EEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccC
Q 045619 385 VVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEK 464 (615)
Q Consensus 385 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~ 464 (615)
+|++++|.+++..+ +..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+..+ +
T Consensus 247 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~---~------------ 305 (466)
T 1o6v_A 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISP---I------------ 305 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCGG---G------------
T ss_pred EEECCCCccccchh--hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCchh---h------------
Confidence 77777777766544 6777777777777777765332 4567777777777777764322 1
Q ss_pred CCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccC
Q 045619 465 GSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFAN 544 (615)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 544 (615)
..+++|+.|++++|++.+..+ +..+++|++|++++|++++. ..+..
T Consensus 306 ------------------------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~ 351 (466)
T 1o6v_A 306 ------------------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN 351 (466)
T ss_dssp ------------------------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ------------------------------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhcc
Confidence 224667778888887776544 67778888888888877743 46777
Q ss_pred CCCCCEEeCCCCcccccchhhhhhcCcCCeEEccccccee
Q 045619 545 MTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWG 584 (615)
Q Consensus 545 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~ 584 (615)
+++|+.|++++|++.+..| +..+++|+.|++++|++.+
T Consensus 352 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 352 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 7888888888888776665 6777888888888887775
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=4.5e-31 Score=273.57 Aligned_cols=269 Identities=24% Similarity=0.253 Sum_probs=162.8
Q ss_pred ChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhh
Q 045619 65 SPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVL 144 (615)
Q Consensus 65 ~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 144 (615)
+..+..+++|++|++++|.+++. | .+..+++|++|++++|++. .++ +..+++|++|++++|.+.... +.
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~----~~~--~~~l~~L~~L~Ls~N~l~~~~---~~ 103 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT----TLD--LSQNTNLTYLACDSNKLTNLD---VT 103 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS----CCC--CTTCTTCSEEECCSSCCSCCC---CT
T ss_pred ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC----eEc--cccCCCCCEEECcCCCCceee---cC
Confidence 44688899999999999999854 5 6999999999999999986 233 788899999999998877652 55
Q ss_pred cccccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCccccccCCCCcCEEecC
Q 045619 145 NLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGFLRNSEELEFLDLS 224 (615)
Q Consensus 145 ~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~ 224 (615)
.+ ++|++|++++|++.+. + ++.+++|++|++++|++... .+...++|++|++++|.
T Consensus 104 ~l-~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~----------------- 159 (457)
T 3bz5_A 104 PL-TKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNK----------------- 159 (457)
T ss_dssp TC-TTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCS-----------------
T ss_pred CC-CcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCC-----------------
Confidence 55 8889999988888753 3 77888888888888865542 23444555555555552
Q ss_pred CcccCcccccccccCCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCCcccccCccccc
Q 045619 225 NNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSIC 304 (615)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 304 (615)
..+.+ .+..+++|+.|++++|+++.++...+++|+.|++++|.+.+..+..+++|+.|++++|.+.+ +| +.
T Consensus 160 ---~~~~~---~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~ 230 (457)
T 3bz5_A 160 ---KITKL---DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VT 230 (457)
T ss_dssp ---CCCCC---CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CT
T ss_pred ---ccccc---ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--cc
Confidence 22122 12334444444444444444443444444455554444444433334555555555555543 23 45
Q ss_pred CCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCcc
Q 045619 305 SLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384 (615)
Q Consensus 305 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 384 (615)
.+++|+.|++++|.+.+ .| ...+ ++|+.|+++.+ +|+.|++++|...+..| +..+++|+
T Consensus 231 ~l~~L~~L~l~~N~l~~-~~--~~~l-~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~ 289 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTE-LD--VSTL-SKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIK 289 (457)
T ss_dssp TCTTCSEEECCSSCCSC-CC--CTTC-TTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCC
T ss_pred ccCCCCEEEeeCCcCCC-cC--HHHC-CCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCC
Confidence 56666666666666653 22 1112 25555555443 33444555555443333 34556666
Q ss_pred EEEcCCCcCCccCc
Q 045619 385 VVNVGNNMIGDTFP 398 (615)
Q Consensus 385 ~L~l~~n~i~~~~~ 398 (615)
.|++++|...+..|
T Consensus 290 ~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 290 ELDVTHNTQLYLLD 303 (457)
T ss_dssp CCCCTTCTTCCEEE
T ss_pred EEECCCCcccceec
Confidence 66666665444433
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=6.5e-31 Score=268.50 Aligned_cols=347 Identities=20% Similarity=0.158 Sum_probs=184.1
Q ss_pred CCCCCCCCCCcc-cceeeeCCCCCcEEEEecCCCCceeecCCcccccccccccccccccccCCCCChh-hhcCCCCceee
Q 045619 1 TTSWAEGTDCCS-WDGVTCDNVTGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISPE-FLRLKELTYLN 78 (615)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~~~-l~~l~~L~~L~ 78 (615)
++.|..+.+||. +.+..|.....++ +-.+.... .. ..-..+.+++++++.+.....+|.. +..+++|++|+
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i---~~~~~~~~--~~--~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~ 75 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHI---DMQTQDVY--FG--FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75 (390)
T ss_dssp ----CCEECBCC------EEEESCEE---CSSCCCCE--ES--CSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEE
T ss_pred cCCCCCccceehhhhhhccceeeeee---eccccccc--cc--ccccccCCceEEEecCCchhhCChhHhcccccCcEEE
Confidence 468999999986 3334453211111 11111111 11 1223456777777777766666654 57777888888
Q ss_pred CCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCC
Q 045619 79 LSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGT 158 (615)
Q Consensus 79 L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~ 158 (615)
+++|.+.+..+.+|..+++|++|++++|.+. ...+..+.++++|++|++++|.+....+..+..+ ++|++|++++|
T Consensus 76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n 151 (390)
T 3o6n_A 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNN 151 (390)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSS
T ss_pred CCCCcccccChhhccCCCCcCEEECCCCCCC---cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCC-CCCcEEECCCC
Confidence 8887777666667777778888888777765 3445556777777777777777665444334445 67777777777
Q ss_pred CCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCccccccCCCCcCEEecCCcccCccccccccc
Q 045619 159 GMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGFLRNSEELEFLDLSNNRIHGRISKSDSQ 238 (615)
Q Consensus 159 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 238 (615)
.+....+..+..+++|++|++++|++... . +..+++|+.+++++|.+.+ + .
T Consensus 152 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~--------------------~~~l~~L~~L~l~~n~l~~-~-----~ 202 (390)
T 3o6n_A 152 NLERIEDDTFQATTSLQNLQLSSNRLTHV---D--------------------LSLIPSLFHANVSYNLLST-L-----A 202 (390)
T ss_dssp CCCBCCTTTTSSCTTCCEEECCSSCCSBC---C--------------------GGGCTTCSEEECCSSCCSE-E-----E
T ss_pred ccCccChhhccCCCCCCEEECCCCcCCcc---c--------------------cccccccceeecccccccc-c-----C
Confidence 77655556666677777777776644332 1 2334455555555554431 1 2
Q ss_pred CCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccC-CCCCCceEEEccCCcccccCcccccCCCccceeecccc
Q 045619 239 GWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTIL-VPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHN 317 (615)
Q Consensus 239 ~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 317 (615)
..++|++|++++|.+..++...+++|+.|++++|.+.+... ..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred CCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence 23455666666666555544444555555555555543211 11344444444444444444444444555555555555
Q ss_pred ccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccC
Q 045619 318 NLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTF 397 (615)
Q Consensus 318 ~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 397 (615)
.+. .++..... +++|++|++++|.++ ..|..+..+++|++|++++|.+++..
T Consensus 283 ~l~-~~~~~~~~--------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 283 RLV-ALNLYGQP--------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp CCC-EEECSSSC--------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred cCc-ccCcccCC--------------------------CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC
Confidence 444 22322222 244555555555444 23333444455555555555554331
Q ss_pred ccccCCCCCCcEEEccCCccc
Q 045619 398 PSWLGCLPGLNILVLRSNRFY 418 (615)
Q Consensus 398 ~~~~~~l~~L~~L~l~~~~~~ 418 (615)
+..+++|+.|++++|++.
T Consensus 335 ---~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 335 ---LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ---CCTTCCCSEEECCSSCEE
T ss_pred ---chhhccCCEEEcCCCCcc
Confidence 344455555555555443
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=5.8e-31 Score=276.55 Aligned_cols=321 Identities=19% Similarity=0.154 Sum_probs=268.5
Q ss_pred cEEEccCCcccCcCCCCCCCCcEEEcCCCccccccC---CCCCCceEEEccCCcccccCcccccCCCccceeeccccccC
Q 045619 244 TYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTIL---VPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLN 320 (615)
Q Consensus 244 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 320 (615)
+.++.++++++.++....++++.|++++|.+.+..+ ..+++|++|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 567888888888888777899999999999887643 44889999999999998888888999999999999999988
Q ss_pred CCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccc
Q 045619 321 GTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSW 400 (615)
Q Consensus 321 ~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 400 (615)
.+|...+...++|++|++++|.+.+..+..+.. +++|++|++++|.+....+..|.++++|++|++++|.+++..+..
T Consensus 94 -~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 94 -LIPLGVFTGLSNLTKLDISENKIVILLDYMFQD-LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp -SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred -ccCcccccCCCCCCEEECCCCccccCChhHccc-cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 555543333358999999999988665655544 489999999999998888888999999999999999998888888
Q ss_pred cCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCcccccccccccc
Q 045619 401 LGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQD 480 (615)
Q Consensus 401 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 480 (615)
+..+++|+.|++++|.+.... ...+..+++|+.|++++|...+.++...+.
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------------------------- 222 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYLDTMTPNCLY--------------------------- 222 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEEC--TTCSCSCTTCCEEEEECCTTCCEECTTTTT---------------------------
T ss_pred hcccCCCcEEeCCCCcCcEeC--hhhcccCcccceeeCCCCccccccCccccc---------------------------
Confidence 999999999999999887633 334577889999999998776555432111
Q ss_pred ceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 045619 481 SVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHG 560 (615)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 560 (615)
..+|++|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|+.|+|++|++..
T Consensus 223 ----------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (477)
T 2id5_A 223 ----------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286 (477)
T ss_dssp ----------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred ----------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence 2369999999999997666789999999999999999998888889999999999999999999
Q ss_pred cchhhhhhcCcCCeEEcccccceecCCCC-CCCCCccCcccCCCcCccCCCC
Q 045619 561 RILEQLLSVTALASLNLSYNRLWGRIPRG-NQFNTFENDSYIGNIHLCGEPL 611 (615)
Q Consensus 561 ~~~~~~~~l~~L~~L~l~~n~i~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~ 611 (615)
..|..|..+++|++|++++|.+.+..+.. ..+++++.|.+.+|++.|++++
T Consensus 287 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 99999999999999999999998654443 3478999999999999999864
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.8e-30 Score=256.12 Aligned_cols=260 Identities=28% Similarity=0.481 Sum_probs=193.9
Q ss_pred CCceEEEccCCcccc--cCcccccCCCccceeeccc-cccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcc
Q 045619 283 PSTRAFLFSNNKLFG--QIPPSICSLSSLEYLSLSH-NNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSL 359 (615)
Q Consensus 283 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L 359 (615)
.++++|+++++.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+. +|++|++++|.+.+..|..+... ++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQI-KTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGC-TTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCC-CCC
Confidence 356666666666665 5666677777777777774 666656666665554 67777777776665555555444 566
Q ss_pred cEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCC-CCcEEEccCCcccCccCCCccCCCCCcccEEEc
Q 045619 360 RSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLP-GLNILVLRSNRFYGPLCESNIMFPFQALRIIDL 438 (615)
Q Consensus 360 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 438 (615)
++|++++|.+++..|..+..+++|++|++++|.+++..|..+..++ .|++|++++|
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N----------------------- 184 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN----------------------- 184 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-----------------------
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-----------------------
Confidence 6666666666666666666666666666666666555565555554 5555555554
Q ss_pred cCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccc
Q 045619 439 SHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVL 518 (615)
Q Consensus 439 ~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 518 (615)
.+.+..|..+ ..+. |+.|++++|++.+..+..+
T Consensus 185 ---~l~~~~~~~~-------------------------------------------~~l~-L~~L~Ls~N~l~~~~~~~~ 217 (313)
T 1ogq_A 185 ---RLTGKIPPTF-------------------------------------------ANLN-LAFVDLSRNMLEGDASVLF 217 (313)
T ss_dssp ---EEEEECCGGG-------------------------------------------GGCC-CSEEECCSSEEEECCGGGC
T ss_pred ---eeeccCChHH-------------------------------------------hCCc-ccEEECcCCcccCcCCHHH
Confidence 4443333221 1123 8889999999988888899
Q ss_pred cCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCCCCCCCccCc
Q 045619 519 GDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFEND 598 (615)
Q Consensus 519 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~ 598 (615)
..+++|++|++++|++++..|. +..+++|++|++++|++++..|..+..+++|++|++++|++.+.+|+...+++++.+
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l 296 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGG
T ss_pred hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChH
Confidence 9999999999999999865554 888999999999999999999999999999999999999999999999889999999
Q ss_pred ccCCCcCccCCCCCCCC
Q 045619 599 SYIGNIHLCGEPLTKTK 615 (615)
Q Consensus 599 ~~~~~~~~~~~~~~~~~ 615 (615)
.+.||+.+|+.|+..|+
T Consensus 297 ~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 297 AYANNKCLCGSPLPACT 313 (313)
T ss_dssp GTCSSSEEESTTSSCCC
T ss_pred HhcCCCCccCCCCCCCC
Confidence 99999999999998774
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.7e-29 Score=250.71 Aligned_cols=219 Identities=25% Similarity=0.301 Sum_probs=124.4
Q ss_pred ccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCC
Q 045619 303 ICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDE 382 (615)
Q Consensus 303 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~ 382 (615)
+..+++|+.|++++|......+ .+..+ ++|++|++++|.+.+..+ +. .+++|++|++++|.+.+..+ +..+++
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~-~~~~l-~~L~~L~l~~~~~~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~ 200 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLS-PLSNM-TGLNYLTVTESKVKDVTP--IA-NLTDLYSLSLNYNQIEDISP--LASLTS 200 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCG-GGTTC-TTCCEEECCSSCCCCCGG--GG-GCTTCSEEECTTSCCCCCGG--GGGCTT
T ss_pred hccCCceeEEECCCCCCccccc-chhhC-CCCcEEEecCCCcCCchh--hc-cCCCCCEEEccCCccccccc--ccCCCc
Confidence 4445555555555553331222 22222 255555555555542221 22 22556666666665553222 555566
Q ss_pred ccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccc
Q 045619 383 LEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVD 462 (615)
Q Consensus 383 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~ 462 (615)
|+++++++|.+++..+ +..+++|++|++++|.+....+ +..+++|+.|++++|.+.+. +.
T Consensus 201 L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~-~~------------- 260 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDI-NA------------- 260 (347)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC-GG-------------
T ss_pred cceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCC-hh-------------
Confidence 6666666666554433 5556666666666665554322 34556666666666655531 10
Q ss_pred cCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccc
Q 045619 463 EKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSF 542 (615)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 542 (615)
+..+++|+.|++++|++.+. ..+..+++|++|++++|++++..+..|
T Consensus 261 -------------------------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 261 -------------------------------VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp -------------------------------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred -------------------------------HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence 01245577777777777643 346777777777777777776666777
Q ss_pred cCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccce
Q 045619 543 ANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLW 583 (615)
Q Consensus 543 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 583 (615)
..+++|++|++++|++++..| +..+++|++|++++|+|.
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 777777777777777776555 667777777777777764
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=6.6e-29 Score=267.50 Aligned_cols=307 Identities=20% Similarity=0.167 Sum_probs=177.8
Q ss_pred ccccccccccccccCCCCChh-hhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCC
Q 045619 47 HLLRLQSLAFNNFNGSQISPE-FLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKL 125 (615)
Q Consensus 47 ~~~~L~~L~~~~~~~~~l~~~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L 125 (615)
.+.+++.+.+.+.....+|.. +..+++|++|++++|.+++..|..|..+++|++|++++|.+. ...|..+.++++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC---CCCHHHHcCCCCC
Confidence 456667777776666656654 566777777777777777666667777777777777777765 4444556777777
Q ss_pred CEEecccccCCCCCchhhhcccccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCC
Q 045619 126 SVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSF 205 (615)
Q Consensus 126 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 205 (615)
++|++++|.+....+..+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+... .
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~-------------- 187 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D-------------- 187 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---C--------------
T ss_pred CEEEeeCCCCCCCCHHHhccC-CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---C--------------
Confidence 777777777665544444555 6777777777777666666666777777777777644331 1
Q ss_pred CCccccccCCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccC-CCCCC
Q 045619 206 SNFTGFLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTIL-VPPPS 284 (615)
Q Consensus 206 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~ 284 (615)
+..+++|+.|++++|.+.+ + ...++|+.|++++|.+..++...+++|+.|++++|.+.+... ..+++
T Consensus 188 ------~~~l~~L~~L~l~~n~l~~-l-----~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~ 255 (597)
T 3oja_B 188 ------LSLIPSLFHANVSYNLLST-L-----AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG 255 (597)
T ss_dssp ------GGGCTTCSEEECCSSCCSE-E-----ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTT
T ss_pred ------hhhhhhhhhhhcccCcccc-c-----cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCC
Confidence 2334555555555555441 1 233456666666666655555445566666666665554211 11455
Q ss_pred ceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEc
Q 045619 285 TRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDL 364 (615)
Q Consensus 285 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l 364 (615)
|+.|++++|.+.+..|..+..+++|+.|++++|.+. .+|..+..+ ++|+.|++++|.+. .+|..+... ++|++|++
T Consensus 256 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l-~~L~~L~Ls~N~l~-~i~~~~~~l-~~L~~L~L 331 (597)
T 3oja_B 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI-PTLKVLDLSHNHLL-HVERNQPQF-DRLENLYL 331 (597)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCC-TTCCEEECCSSCCC-CCGGGHHHH-TTCSEEEC
T ss_pred CCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccC-CCCcEEECCCCCCC-ccCcccccC-CCCCEEEC
Confidence 555555555555555555555666666666666555 333333333 25555555555555 334333222 45555555
Q ss_pred CCCcccCCCCcccCCCCCccEEEcCCCcC
Q 045619 365 NSNKLEGPFPRYLADCDELEVVNVGNNMI 393 (615)
Q Consensus 365 ~~~~i~~~~~~~~~~l~~L~~L~l~~n~i 393 (615)
++|.+++.. +..+++|+.|++++|++
T Consensus 332 ~~N~l~~~~---~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 332 DHNSIVTLK---LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CSSCCCCCC---CCTTCCCSEEECCSSCE
T ss_pred CCCCCCCcC---hhhcCCCCEEEeeCCCC
Confidence 555554321 34445555555555554
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.5e-29 Score=255.68 Aligned_cols=330 Identities=20% Similarity=0.177 Sum_probs=189.4
Q ss_pred CCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCC---CCCCCCcEEEcCCCccccccC---CCCCCceEE
Q 045619 215 SEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLRNNTIQGTIL---VPPPSTRAF 288 (615)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~---~~~~~L~~L 288 (615)
+++++.++++++.+. .++...+..+++|++|++++|.++.+++ ..+++|++|++++|.+.+..+ ..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 355566666666555 4555555556666666666666655543 233445555555555443322 124555555
Q ss_pred EccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCc
Q 045619 289 LFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNK 368 (615)
Q Consensus 289 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~ 368 (615)
++++|.+....+..+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+.+. +. ..+++|+.|++++|.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~-~~---~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHV-DL---SLIPSLFHANVSYNL 197 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT-TCCEEECCSSCCSBC-CG---GGCTTCSEEECCSSC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCC-CCCEEECCCCcCCcc-cc---ccccccceeeccccc
Confidence 5555555533334456666666666666666533333344433 666666666666532 11 112566666666665
Q ss_pred ccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCc
Q 045619 369 LEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLP 448 (615)
Q Consensus 369 i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 448 (615)
++.. ...+.|++|++++|.++.... ...++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+
T Consensus 198 l~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 198 LSTL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp CSEE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCEEES
T ss_pred cccc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc----HHHcCCCCccEEECCCCcCCCcCh
Confidence 5421 223456666666666644322 1235566666666665542 123455666666666666554333
Q ss_pred hHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEe
Q 045619 449 RWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLN 528 (615)
Q Consensus 449 ~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~ 528 (615)
.. +..+++|++|++++|++++ .+..+..+++|++|+
T Consensus 266 ~~-------------------------------------------~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 266 HP-------------------------------------------FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 301 (390)
T ss_dssp GG-------------------------------------------GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEE
T ss_pred hH-------------------------------------------ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEE
Confidence 21 1224667778888887774 344556777888888
Q ss_pred CcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCCCCCCCccCcccCCCcCccC
Q 045619 529 LSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCG 608 (615)
Q Consensus 529 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 608 (615)
+++|+++ .+|..+..+++|++|++++|+++... +..+++|++|++++|++...-.. ..+..+....+.+++..|.
T Consensus 302 L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCK 376 (390)
T ss_dssp CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCC
T ss_pred CCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceec
Confidence 8888777 56666777778888888888776542 55677788888888877654211 1234555666667777776
Q ss_pred CCC
Q 045619 609 EPL 611 (615)
Q Consensus 609 ~~~ 611 (615)
.+.
T Consensus 377 ~~~ 379 (390)
T 3o6n_A 377 IDY 379 (390)
T ss_dssp TTC
T ss_pred ccc
Confidence 554
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=4e-30 Score=253.57 Aligned_cols=266 Identities=27% Similarity=0.310 Sum_probs=193.6
Q ss_pred CCCCCCCCCCcc--cceeeeCCCC--CcEEEEecCCCCcee--ecCCccccccccccccccccc-cc-CCCCChhhhcCC
Q 045619 1 TTSWAEGTDCCS--WDGVTCDNVT--GNVIGLDLHCSMLEG--TIDDNSTLFHLLRLQSLAFNN-FN-GSQISPEFLRLK 72 (615)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~--~~l~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~~~~-~~-~~~l~~~l~~l~ 72 (615)
+++|..+.+||. |+|++|.... ++|++|+++++.+.| .++. .+.++++|++|++.+ .. ...+|..|..++
T Consensus 24 l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~ 101 (313)
T 1ogq_A 24 LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101 (313)
T ss_dssp GTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESCCCGGGGGCT
T ss_pred ccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCcccccCChhHhcCC
Confidence 368998899999 9999997544 799999999999988 6665 788888888888863 32 224788888888
Q ss_pred CCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccE
Q 045619 73 ELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITV 152 (615)
Q Consensus 73 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~ 152 (615)
+|++|++++|.+++..|..|.++++|++|++++|.+. +.+|..+..+++|++|++++|.+....+..+..+.+.|++
T Consensus 102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS---GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE---SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC---CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence 8888888888888778888888888888888888876 5677778888888888888888876677777777338888
Q ss_pred EEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCcccc---ccCCCCcCEEecCCcccC
Q 045619 153 LDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGF---LRNSEELEFLDLSNNRIH 229 (615)
Q Consensus 153 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~L~~L~l~~~~~~ 229 (615)
|++++|.+.+..|..+..++ |+.|++++|.+.......+...++|+.|++++|.+... +..+++|++|++++|.+.
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc
Confidence 88888888777777777776 88888888865544344455566777777777766532 445566777777777666
Q ss_pred cccccccccCCCcCcEEEccCCcccCcCC--CCCCCCcEEEcCCCc
Q 045619 230 GRISKSDSQGWKSLTYLDISNNFLTQIEQ--HPWKNITVLNLRNNT 273 (615)
Q Consensus 230 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~ 273 (615)
+.++..+ ..+++|++|++++|+++...+ ..+++|+.+++.+|.
T Consensus 258 ~~~p~~l-~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 258 GTLPQGL-TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCCGGG-GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CcCChHH-hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 4444443 566666666666666653333 234455555555554
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.3e-28 Score=247.46 Aligned_cols=303 Identities=23% Similarity=0.349 Sum_probs=219.4
Q ss_pred CCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCC
Q 045619 214 NSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNN 293 (615)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~ 293 (615)
.+++|++|+++++.+. .++. +..+++|++|++++|.++++++ +..+++|++|++++|
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--------------------~~~l~~L~~L~L~~n 98 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--------------------LSNLVKLTNLYIGTN 98 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--------------------GTTCTTCCEEECCSS
T ss_pred hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--------------------hhcCCcCCEEEccCC
Confidence 4555666666665554 2222 3445555555555555554432 222445555555555
Q ss_pred cccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCC
Q 045619 294 KLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPF 373 (615)
Q Consensus 294 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 373 (615)
.+.. . +.+..+++|++|++++|.+. .++. +..+ ++|+.|++++|......+. + ..+++|++|++++|.+....
T Consensus 99 ~i~~-~-~~~~~l~~L~~L~l~~n~i~-~~~~-~~~l-~~L~~L~l~~n~~~~~~~~-~-~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 99 KITD-I-SALQNLTNLRELYLNEDNIS-DISP-LANL-TKMYSLNLGANHNLSDLSP-L-SNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp CCCC-C-GGGTTCTTCSEEECTTSCCC-CCGG-GTTC-TTCCEEECTTCTTCCCCGG-G-TTCTTCCEEECCSSCCCCCG
T ss_pred cccC-c-hHHcCCCcCCEEECcCCccc-Cchh-hccC-CceeEEECCCCCCcccccc-h-hhCCCCcEEEecCCCcCCch
Confidence 5543 2 35778888888888888887 4443 4444 4788888888865533333 3 34478888888888877443
Q ss_pred CcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHh
Q 045619 374 PRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFV 453 (615)
Q Consensus 374 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 453 (615)
+ +..+++|++|++++|.+++..+ +..+++|+.+++++|.+..... +..+++|+.|++++|.+.+..+
T Consensus 172 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~----- 238 (347)
T 4fmz_A 172 P--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP----- 238 (347)
T ss_dssp G--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG-----
T ss_pred h--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc-----
Confidence 3 7778888888888888866544 7788888888888887765433 4667888888888887764322
Q ss_pred chhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCc
Q 045619 454 SLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNG 533 (615)
Q Consensus 454 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~ 533 (615)
...+++|++|++++|++++. ..+..+++|++|++++|+
T Consensus 239 ----------------------------------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 239 ----------------------------------------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp ----------------------------------------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred ----------------------------------------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCc
Confidence 12367799999999999864 568999999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCCCCCCCccCcccCCCc
Q 045619 534 LTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFENDSYIGNI 604 (615)
Q Consensus 534 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~ 604 (615)
+++ + ..+..+++|++|++++|++.+..+..+.++++|++|++++|++.+..| ...+++++.+.+.+|+
T Consensus 277 l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 277 ISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 984 3 468899999999999999999999999999999999999999987666 6668899998888876
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.3e-28 Score=265.28 Aligned_cols=328 Identities=21% Similarity=0.189 Sum_probs=191.2
Q ss_pred CCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCC---CCCCCCcEEEcCCCccccccC---CCCCCceEEE
Q 045619 216 EELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLRNNTIQGTIL---VPPPSTRAFL 289 (615)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~---~~~~~L~~L~ 289 (615)
.+++.++++++.+. .++...+..+++|+.|++++|.++.+++ ..+++|+.|++++|.+.+..+ ..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34445555555444 3444444445555555555555544433 223344444444444443322 1244555555
Q ss_pred ccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcc
Q 045619 290 FSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKL 369 (615)
Q Consensus 290 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i 369 (615)
+++|.+....+..|..+++|++|++++|.+.+..|..+..+. +|+.|++++|.+.+.... .+++|+.|++++|.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~----~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRLTHVDLS----LIPSLFHANVSYNLL 204 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-TCCEEECTTSCCSBCCGG----GCTTCSEEECCSSCC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC-cCcEEECcCCCCCCcChh----hhhhhhhhhcccCcc
Confidence 555555544444456666666666666666544444444443 666666666666533211 125666666666655
Q ss_pred cCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCch
Q 045619 370 EGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPR 449 (615)
Q Consensus 370 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 449 (615)
++ +...+.|+.|++++|.++...+.. .++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..|.
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC----hhhccCCCCCEEECCCCccCCCCHH
Confidence 43 223345666666666664433221 24666666666666542 2235566677777777666644332
Q ss_pred HHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeC
Q 045619 450 WIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNL 529 (615)
Q Consensus 450 ~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L 529 (615)
.+ ..+++|+.|++++|.+++ +|..+..+++|++|+|
T Consensus 273 ~~-------------------------------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 273 PF-------------------------------------------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 308 (597)
T ss_dssp GG-------------------------------------------TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEEC
T ss_pred Hh-------------------------------------------cCccCCCEEECCCCCCCC-CCcccccCCCCcEEEC
Confidence 21 225668888888888875 4555677888888888
Q ss_pred cCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCCCCCCCccCcccCCCcCccCC
Q 045619 530 SHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGE 609 (615)
Q Consensus 530 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~ 609 (615)
++|.++ .+|..+..+++|++|+|++|.+.... +..+++|++|++++|++.+.-+.. .+..+....+.++...|+.
T Consensus 309 s~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCT
T ss_pred CCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCc
Confidence 888888 67777788888888888888887542 566788888888888887653221 2345556666777777765
Q ss_pred C
Q 045619 610 P 610 (615)
Q Consensus 610 ~ 610 (615)
+
T Consensus 384 ~ 384 (597)
T 3oja_B 384 D 384 (597)
T ss_dssp T
T ss_pred c
Confidence 4
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.3e-31 Score=277.45 Aligned_cols=112 Identities=25% Similarity=0.282 Sum_probs=73.1
Q ss_pred CCCceeeCCCCccCCCCchh-hhcCCCCcEEecCCCcCcc-ccCcchhhccCCCCCCEEecccccCCCCCchhhhcccc-
Q 045619 72 KELTYLNLSYTRFSGLLPQE-ISHMSKLTHLDLFDCDMTI-EQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSS- 148 (615)
Q Consensus 72 ~~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~- 148 (615)
++|++||++++.+++..... +..+++|++|++++|.+.. ....++..+..+++|++|++++|.+....+..+....+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46788888888876544333 6778888888888888752 12245667777888888888887766544444443323
Q ss_pred ---cccEEEcCCCCCccC----CCccccCCCCCcEEEcccCC
Q 045619 149 ---TITVLDLSGTGMRGN----FPREIFQLPHLQELHLSSNK 183 (615)
Q Consensus 149 ---~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~ 183 (615)
+|++|++++|.+.+. .+..+..+++|++|++++|.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 577777777766532 24455566666666666664
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=7.7e-27 Score=232.68 Aligned_cols=285 Identities=21% Similarity=0.278 Sum_probs=167.0
Q ss_pred cCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccC---CCCCCceEEEccCCcccccCcccccCCCccceeeccccc
Q 045619 242 SLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTIL---VPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNN 318 (615)
Q Consensus 242 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 318 (615)
+++.++++++.++.++....++++.|++++|.+.+..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 46666777766666665555666666666666654432 235666666666666666666667777777777777777
Q ss_pred cCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccC--CCCcccCCCCCccEEEcCCCcCCcc
Q 045619 319 LNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEG--PFPRYLADCDELEVVNVGNNMIGDT 396 (615)
Q Consensus 319 l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~n~i~~~ 396 (615)
+. .+|..++ ++|++|++++|.+.+ .+......+++|++|++++|.++. ..+..+..+ +|++|++++|.+++.
T Consensus 114 l~-~l~~~~~---~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 114 LV-EIPPNLP---SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp CC-SCCSSCC---TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CC-ccCcccc---ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 76 5555444 367777777777663 333322333667777777776642 445555555 666777777766543
Q ss_pred CccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCcccccccc
Q 045619 397 FPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREED 476 (615)
Q Consensus 397 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 476 (615)
|..+. ++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+
T Consensus 188 -~~~~~--~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~L~~N~l~~~~~~~~------------------------- 237 (332)
T 2ft3_A 188 -PKDLP--ETLNELHLDHNKIQAIEL--EDLLRYSKLYRLGLGHNQIRMIENGSL------------------------- 237 (332)
T ss_dssp -CSSSC--SSCSCCBCCSSCCCCCCT--TSSTTCTTCSCCBCCSSCCCCCCTTGG-------------------------
T ss_pred -Ccccc--CCCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCcCCcCChhHh-------------------------
Confidence 22222 466666666666554322 223455666666666666554332211
Q ss_pred ccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccC------CCCCCE
Q 045619 477 YYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFAN------MTALES 550 (615)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~ 550 (615)
..+++|++|++++|++. .+|..+..+++|++|++++|++++..+..|.. .++|+.
T Consensus 238 ------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 238 ------------------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298 (332)
T ss_dssp ------------------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSE
T ss_pred ------------------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccc
Confidence 12455666666666666 45555666667777777777666544444443 245666
Q ss_pred EeCCCCccc--ccchhhhhhcCcCCeEEccccc
Q 045619 551 LDLSSNKLH--GRILEQLLSVTALASLNLSYNR 581 (615)
Q Consensus 551 L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~ 581 (615)
|++++|.+. ...|..|..+++|+.+++++|+
T Consensus 299 L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eEeecCcccccccCcccccccchhhhhhccccc
Confidence 777766665 4555666666667766666653
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=4.5e-27 Score=234.21 Aligned_cols=267 Identities=18% Similarity=0.209 Sum_probs=147.1
Q ss_pred cCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCCcccccCcccccCCCccceeeccccccCC
Q 045619 242 SLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNG 321 (615)
Q Consensus 242 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 321 (615)
+++.++++++.++.++....+.++.|++++|.+.+ ..+..+..+++|++|++++|.+.+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~---------------------~~~~~~~~l~~L~~L~L~~n~l~~ 90 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE---------------------IKDGDFKNLKNLHTLILINNKISK 90 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC---------------------BCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCE---------------------eChhhhccCCCCCEEECCCCcCCe
Confidence 46666666666666555444555555555555543 333345555555555555555553
Q ss_pred CCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCc--cCcc
Q 045619 322 TIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGD--TFPS 399 (615)
Q Consensus 322 ~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~ 399 (615)
..|..+..+. +|++|++++|.+. .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++. ..+.
T Consensus 91 ~~~~~~~~l~-~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 165 (330)
T 1xku_A 91 ISPGAFAPLV-KLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165 (330)
T ss_dssp BCTTTTTTCT-TCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT
T ss_pred eCHHHhcCCC-CCCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh
Confidence 3344444443 5555555555554 3333222 455566666655554444455556666666666665532 4445
Q ss_pred ccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccc
Q 045619 400 WLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQ 479 (615)
Q Consensus 400 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~ 479 (615)
.+..+++|++|++++|.+..... ...++|+.|++++|.+.+..+.. +
T Consensus 166 ~~~~l~~L~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~l~~~~~~~-~--------------------------- 212 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNITTIPQ-----GLPPSLTELHLDGNKITKVDAAS-L--------------------------- 212 (330)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCS-----SCCTTCSEEECTTSCCCEECTGG-G---------------------------
T ss_pred hccCCCCcCEEECCCCccccCCc-----cccccCCEEECCCCcCCccCHHH-h---------------------------
Confidence 55566666666666665543111 11256666666666655433321 1
Q ss_pred cceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCccc
Q 045619 480 DSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLH 559 (615)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 559 (615)
..+++|+.|++++|++.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 213 ---------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 213 ---------------KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp ---------------TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred ---------------cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 11345666666666666555555666666666666666666 55666666666666666666666
Q ss_pred ccchhhhhh------cCcCCeEEcccccce
Q 045619 560 GRILEQLLS------VTALASLNLSYNRLW 583 (615)
Q Consensus 560 ~~~~~~~~~------l~~L~~L~l~~n~i~ 583 (615)
...+..|.. .++|+.+++++|++.
T Consensus 277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccChhhcCCcccccccccccceEeecCccc
Confidence 555555532 255666666666664
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=2.4e-26 Score=229.00 Aligned_cols=291 Identities=21% Similarity=0.264 Sum_probs=222.5
Q ss_pred CCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCCc
Q 045619 215 SEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNK 294 (615)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~ 294 (615)
..+++.++++++.+. .+|... .+.++.|++++|.++.+++..+. .+++|++|++++|.
T Consensus 30 ~c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~------------------~l~~L~~L~L~~n~ 87 (330)
T 1xku_A 30 QCHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFK------------------NLKNLHTLILINNK 87 (330)
T ss_dssp EEETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTT------------------TCTTCCEEECCSSC
T ss_pred cCCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhc------------------cCCCCCEEECCCCc
Confidence 347899999999887 566543 37899999999999988763322 12344445555555
Q ss_pred ccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccC--C
Q 045619 295 LFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEG--P 372 (615)
Q Consensus 295 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~--~ 372 (615)
+.+..|..+..+++|++|++++|.+. .+|..++ ++|++|++++|.+.+..+..+. .+++|++|++++|.+.. .
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 88 ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSGI 162 (330)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHT-TCTTCCEEECCSSCCCGGGB
T ss_pred CCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhc-CCccccEEECCCCcCCccCc
Confidence 55556778888999999999999987 6776654 4899999999999855444444 45899999999998863 5
Q ss_pred CCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHH
Q 045619 373 FPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIF 452 (615)
Q Consensus 373 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 452 (615)
.+..+.++++|++|++++|.++.. |..+. ++|++|++++|++....+ ..+..+++|+.|++++|.+.+..+..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~- 236 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNSISAVDNGSL- 236 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCCEECT--GGGTTCTTCCEEECCSSCCCEECTTTG-
T ss_pred ChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCcCceeChhhc-
Confidence 667888899999999999998654 33333 789999999998876433 345778999999999999875443221
Q ss_pred hchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCC
Q 045619 453 VSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHN 532 (615)
Q Consensus 453 ~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n 532 (615)
..+++|++|++++|++. .+|..+..+++|++|++++|
T Consensus 237 ------------------------------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 237 ------------------------------------------ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp ------------------------------------------GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSS
T ss_pred ------------------------------------------cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCC
Confidence 22577999999999998 67888999999999999999
Q ss_pred cCcccCCccccC------CCCCCEEeCCCCcccc--cchhhhhhcCcCCeEEccccc
Q 045619 533 GLTGSIPVSFAN------MTALESLDLSSNKLHG--RILEQLLSVTALASLNLSYNR 581 (615)
Q Consensus 533 ~l~~~~~~~~~~------l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~ 581 (615)
++++..+..|.. .++|+.|++++|.+.. ..|..|..+++++.+++++|+
T Consensus 274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 999766666643 4789999999999864 667788999999999999985
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=4.3e-27 Score=234.52 Aligned_cols=286 Identities=17% Similarity=0.194 Sum_probs=223.3
Q ss_pred CCcEEEcCCCccccccCCCCCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCC
Q 045619 263 NITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNN 342 (615)
Q Consensus 263 ~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~ 342 (615)
+++.++++++.+........++++.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+. +|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR-KLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT-TCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC-CCCEEECCCC
Confidence 688999999988765555578899999999998877777888999999999999988855566666654 8999999999
Q ss_pred cccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCc--cCccccCCCCCCcEEEccCCcccCc
Q 045619 343 KLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGD--TFPSWLGCLPGLNILVLRSNRFYGP 420 (615)
Q Consensus 343 ~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~ 420 (615)
.+. .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.++. ..+..+..+ +|+.|++++|.+...
T Consensus 113 ~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 113 HLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp CCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred cCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 887 5555443 689999999999887666778889999999999998853 666777777 888999999887762
Q ss_pred cCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhcccc
Q 045619 421 LCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITIL 500 (615)
Q Consensus 421 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 500 (615)
.. ...++|+.|++++|.+.+..+..+ ..+++|
T Consensus 188 ~~-----~~~~~L~~L~l~~n~i~~~~~~~l-------------------------------------------~~l~~L 219 (332)
T 2ft3_A 188 PK-----DLPETLNELHLDHNKIQAIELEDL-------------------------------------------LRYSKL 219 (332)
T ss_dssp CS-----SSCSSCSCCBCCSSCCCCCCTTSS-------------------------------------------TTCTTC
T ss_pred Cc-----cccCCCCEEECCCCcCCccCHHHh-------------------------------------------cCCCCC
Confidence 21 123688888888888875443221 225678
Q ss_pred ceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhc------CcCCe
Q 045619 501 TTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSV------TALAS 574 (615)
Q Consensus 501 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l------~~L~~ 574 (615)
+.|++++|++.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++...+..|... ++|+.
T Consensus 220 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298 (332)
T ss_dssp SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSE
T ss_pred CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccc
Confidence 99999999999887888999999999999999999 788889999999999999999998777777653 67899
Q ss_pred EEcccccce--ecCCCCC-CCCCccCcccCCC
Q 045619 575 LNLSYNRLW--GRIPRGN-QFNTFENDSYIGN 603 (615)
Q Consensus 575 L~l~~n~i~--~~~p~~~-~~~~~~~~~~~~~ 603 (615)
|++++|++. +..|..+ .++.++.+.+.+|
T Consensus 299 L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp EECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred eEeecCcccccccCcccccccchhhhhhcccc
Confidence 999999987 3333322 3667777766655
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=9e-30 Score=266.53 Aligned_cols=372 Identities=21% Similarity=0.160 Sum_probs=179.8
Q ss_pred CCCcEEEcccCCCccccCCC-CCCCCCccEEECCCCCccc--------cccCCCCcCEEecCCcccCcccccccccCCC-
Q 045619 172 PHLQELHLSSNKYLTGYLPE-SNWSTSLRELDLSFSNFTG--------FLRNSEELEFLDLSNNRIHGRISKSDSQGWK- 241 (615)
Q Consensus 172 ~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~- 241 (615)
++|++|+++++.+....... +...++|++|++++|.+.+ .+..+++|++|++++|.+.+......+..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677777777554433222 3344677777777776653 2455677777777777665433333334444
Q ss_pred ---cCcEEEccCCcccCcC-------CCCCCCCcEEEcCCCccccccC--------CCCCCceEEEccCCcccccC----
Q 045619 242 ---SLTYLDISNNFLTQIE-------QHPWKNITVLNLRNNTIQGTIL--------VPPPSTRAFLFSNNKLFGQI---- 299 (615)
Q Consensus 242 ---~L~~L~l~~~~~~~~~-------~~~~~~L~~L~l~~~~i~~~~~--------~~~~~L~~L~l~~~~~~~~~---- 299 (615)
+|++|++++|.++..+ ...+++|++|++++|.+.+..+ ...++|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 5777777777666432 1345566666666666543211 11345555555555554422
Q ss_pred cccccCCCccceeeccccccCCCCCCChhc----cccCCcEEEccCCccccc----CchhhhcCCCcccEEEcCCCcccC
Q 045619 300 PPSICSLSSLEYLSLSHNNLNGTIPPCLGN----FSTQLTILHLNNNKLQGR----IPDAFANGSCSLRSLDLNSNKLEG 371 (615)
Q Consensus 300 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~----~~~~L~~L~L~~~~i~~~----~~~~~~~~~~~L~~L~l~~~~i~~ 371 (615)
+..+..+++|++|++++|.+.+..+..+.. ..++|++|++++|.+.+. ++..+.. +++|++|++++|.+++
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS-KASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH-CTTCCEEECCSSBCHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh-CCCccEEeccCCcCCh
Confidence 233344455555555555544222222211 112455555555555432 1222222 2455555555555442
Q ss_pred CC-----CcccCCCCCccEEEcCCCcCCcc----CccccCCCCCCcEEEccCCcccCccCCCc---cCCCCCcccEEEcc
Q 045619 372 PF-----PRYLADCDELEVVNVGNNMIGDT----FPSWLGCLPGLNILVLRSNRFYGPLCESN---IMFPFQALRIIDLS 439 (615)
Q Consensus 372 ~~-----~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~ 439 (615)
.. +..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+........ .....++|+.|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 21 11222345555555555555443 23334445555555555554432111100 00122355555555
Q ss_pred CCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCcccc
Q 045619 440 HNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLG 519 (615)
Q Consensus 440 ~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 519 (615)
+|.+++.....+. ..+..+++|++|++++|++.+..+..+.
T Consensus 322 ~n~l~~~~~~~l~---------------------------------------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 322 SCSFTAACCSHFS---------------------------------------SVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp TSCCBGGGHHHHH---------------------------------------HHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred CCCCchHHHHHHH---------------------------------------HHHhhCCCccEEEccCCccccccHHHHH
Confidence 5554422111110 0112245566666666666543333222
Q ss_pred C-----CCCCcEEeCcCCcCcc----cCCccccCCCCCCEEeCCCCcccccchhhhhh-----cCcCCeEEcccccce
Q 045619 520 D-----FKSLIVLNLSHNGLTG----SIPVSFANMTALESLDLSSNKLHGRILEQLLS-----VTALASLNLSYNRLW 583 (615)
Q Consensus 520 ~-----l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----l~~L~~L~l~~n~i~ 583 (615)
. .++|++|++++|++++ .+|..+..+++|++|++++|+++......+.. ...|+.|.+.++.+.
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 1 4566666666666654 44555555666666666666665443333321 124556655555544
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=5.2e-25 Score=216.87 Aligned_cols=262 Identities=21% Similarity=0.224 Sum_probs=186.6
Q ss_pred CCceEEEccCCcccccCcccccCCCccceeeccccccCCC--CCCChhccccCCcEEEccCCcccccCchhhhcCCCccc
Q 045619 283 PSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGT--IPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLR 360 (615)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~ 360 (615)
+++++|++++|.+....+..+..+++|++|++++|.+... .+..+... ++|++|++++|.+. .++..+.. +++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~-~l~~~~~~-l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVI-TMSSNFLG-LEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCCCEEECCSCSEE-EEEEEEET-CTTCC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccc-cccCEEECCCCccc-cChhhcCC-CCCCC
Confidence 3444444444544433444567788888888888877521 13444444 47888888888876 44544443 47888
Q ss_pred EEEcCCCcccCCCC-cccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEcc
Q 045619 361 SLDLNSNKLEGPFP-RYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLS 439 (615)
Q Consensus 361 ~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 439 (615)
+|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.... ..+..+++|+.|+++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLS 183 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch-hHHhhCcCCCEEECC
Confidence 88888888875544 5678888888888888888888888888888888888888887652111 234677888888888
Q ss_pred CCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCcccc
Q 045619 440 HNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLG 519 (615)
Q Consensus 440 ~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 519 (615)
+|.+.+..+..+ ..+++|++|++++|++++..+..+.
T Consensus 184 ~n~l~~~~~~~~-------------------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 184 QCQLEQLSPTAF-------------------------------------------NSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp TSCCCEECTTTT-------------------------------------------TTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred CCCcCCcCHHHh-------------------------------------------cCCCCCCEEECCCCccCccChhhcc
Confidence 888775444221 1246688899999998877777888
Q ss_pred CCCCCcEEeCcCCcCcccCCccccCCC-CCCEEeCCCCccccc--chhhhhhcCcCCeEEcccccceecCCCCCC
Q 045619 520 DFKSLIVLNLSHNGLTGSIPVSFANMT-ALESLDLSSNKLHGR--ILEQLLSVTALASLNLSYNRLWGRIPRGNQ 591 (615)
Q Consensus 520 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~ 591 (615)
.+++|++|++++|++++..|..+..++ +|++|++++|.+.+. .....+.+...+.+.+..+.+....|+...
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 899999999999999888888888884 899999999988753 222334556666777777888877777544
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=8e-25 Score=227.68 Aligned_cols=228 Identities=19% Similarity=0.161 Sum_probs=102.9
Q ss_pred CCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEc
Q 045619 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVL 412 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 412 (615)
+++.|++++|.+.+..+..+... ++|++|++++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CccEEECcCCcCceECHHHcCCC-CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 44455555554443333333222 44555555555544444444444555555555555554444444444555555555
Q ss_pred cCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhh
Q 045619 413 RSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVV 492 (615)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (615)
++|++... ....+..+++|+.|++++|+..+.++...+..+++|+.++++++.......
T Consensus 155 ~~N~l~~~--~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------------------- 213 (452)
T 3zyi_A 155 RNNPIESI--PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN------------------- 213 (452)
T ss_dssp CSCCCCEE--CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-------------------
T ss_pred CCCCccee--CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-------------------
Confidence 55544321 112234444555555544332222222212211111111111110000000
Q ss_pred HHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcC
Q 045619 493 LKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTAL 572 (615)
Q Consensus 493 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 572 (615)
...+++|+.|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|+++...+..|..+++|
T Consensus 214 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 214 -LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp -CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred -ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 0113445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CeEEcccccce
Q 045619 573 ASLNLSYNRLW 583 (615)
Q Consensus 573 ~~L~l~~n~i~ 583 (615)
+.|++++|++.
T Consensus 293 ~~L~L~~Np~~ 303 (452)
T 3zyi_A 293 VELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEccCCCcC
Confidence 55555555554
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.4e-27 Score=258.09 Aligned_cols=399 Identities=13% Similarity=0.065 Sum_probs=181.9
Q ss_pred CCCCCCEEecccccCCCCCchhhhccccc-ccEEEcCCCCC-ccC-CCccccCCCCCcEEEcccCCCccccCC----CCC
Q 045619 121 NLTKLSVLNLGWADRSLIEPFSVLNLSST-ITVLDLSGTGM-RGN-FPREIFQLPHLQELHLSSNKYLTGYLP----ESN 193 (615)
Q Consensus 121 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~~-L~~L~l~~~~~-~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~ 193 (615)
.+++|++|++++|.+....+..+...++. |++|++++|.. ... .+.....+++|++|++++|.+...... ...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 44555555555544333333333332233 55555555541 110 111122455555555555532211000 011
Q ss_pred CCCCccEEECCCCCcc--------ccccCCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCCCCCCCCc
Q 045619 194 WSTSLRELDLSFSNFT--------GFLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNIT 265 (615)
Q Consensus 194 ~~~~L~~L~l~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~ 265 (615)
..++|++|+++++.+. ..+..+++|++|++++|.+.+ ++ ..+..+++|++|+++...........+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~---- 263 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKY---- 263 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSS----
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHH----
Confidence 2244444554444443 124556777777777777652 33 334666777777776532110000000
Q ss_pred EEEcCCCccccccCCCCCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCccc
Q 045619 266 VLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQ 345 (615)
Q Consensus 266 ~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~ 345 (615)
.....+++|+.+.+.++.. ...+..+..+++|++|++++|.+.+.....+....++|++|+++ +.+.
T Consensus 264 -----------~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~ 330 (592)
T 3ogk_B 264 -----------MNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIG 330 (592)
T ss_dssp -----------SCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGH
T ss_pred -----------HHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccC
Confidence 0011133444444443211 13444555566666666666654322221111222366666666 3333
Q ss_pred ccCchhhhcCCCcccEEEcCC-----------CcccCC-CCcccCCCCCccEEEcCCCcCCccCccccCC-CCCCcEEEc
Q 045619 346 GRIPDAFANGSCSLRSLDLNS-----------NKLEGP-FPRYLADCDELEVVNVGNNMIGDTFPSWLGC-LPGLNILVL 412 (615)
Q Consensus 346 ~~~~~~~~~~~~~L~~L~l~~-----------~~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l 412 (615)
+.....+...+++|++|++++ +.+++. ....+.++++|++|+++.+.+++..+..+.. +++|+.|++
T Consensus 331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l 410 (592)
T 3ogk_B 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEE
Confidence 222223333335666666662 233321 1111233556666666555555544444443 555666655
Q ss_pred cC----CcccCccC---CCccCCCCCcccEEEccCCc--CcCCCchHHHhchhhhcccccCCCCCcccccccccccccee
Q 045619 413 RS----NRFYGPLC---ESNIMFPFQALRIIDLSHNE--FTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVT 483 (615)
Q Consensus 413 ~~----~~~~~~~~---~~~~~~~~~~L~~L~l~~~~--l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 483 (615)
++ +.++.... ....+..+++|+.|+++.|. +++...
T Consensus 411 ~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~----------------------------------- 455 (592)
T 3ogk_B 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL----------------------------------- 455 (592)
T ss_dssp EECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH-----------------------------------
T ss_pred eecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH-----------------------------------
Confidence 42 22221100 00001224444444443322 111100
Q ss_pred EEecCchhhHHhhccccceEeCCCCccCc-cCCccccCCCCCcEEeCcCCcCccc-CCccccCCCCCCEEeCCCCccccc
Q 045619 484 VTVKGRDVVLKRIITILTTIDLSSNQFQA-EIPRVLGDFKSLIVLNLSHNGLTGS-IPVSFANMTALESLDLSSNKLHGR 561 (615)
Q Consensus 484 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~ 561 (615)
......+++|+.|++++|++++ ..+..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|+++..
T Consensus 456 -------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 456 -------SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp -------HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred -------HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 0111235667777777777764 2334456677777777777776543 233345567777777777777654
Q ss_pred chhhh-hhcCcCCeEEcccc
Q 045619 562 ILEQL-LSVTALASLNLSYN 580 (615)
Q Consensus 562 ~~~~~-~~l~~L~~L~l~~n 580 (615)
....+ ..++.++...+..+
T Consensus 529 ~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 529 GQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHhCCCcEEEEecCc
Confidence 43333 23555555555544
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=8.4e-25 Score=226.70 Aligned_cols=248 Identities=19% Similarity=0.226 Sum_probs=141.5
Q ss_pred eEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcC
Q 045619 286 RAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLN 365 (615)
Q Consensus 286 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~ 365 (615)
..++..+..+. .+|..+. +.++.|++++|.+.+..+..+..+. +|++|++++|.+.+..+..+.. +++|++|+++
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~L~L~ 120 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNG-LANLNTLELF 120 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTT-CSSCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccC-CccCCEEECC
Confidence 34555554444 2333222 4556666666665533333444332 5666666666655333333332 3566666666
Q ss_pred CCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcC
Q 045619 366 SNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTG 445 (615)
Q Consensus 366 ~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 445 (615)
+|.++...+..|..+++|++|++++|.++...+..|..+++|++|++++|......+ ...+..+++|+.|++++|.+..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCcc
Confidence 666654444455666666666666666655555556666666666666543332221 1223455566666666655542
Q ss_pred CCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCc
Q 045619 446 FLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLI 525 (615)
Q Consensus 446 ~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~ 525 (615)
+|. +..+++|++|++++|++++..+..|..+++|+
T Consensus 200 -~~~--------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 234 (440)
T 3zyj_A 200 -IPN--------------------------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234 (440)
T ss_dssp -CCC--------------------------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred -ccc--------------------------------------------cCCCcccCEEECCCCccCccChhhhccCccCC
Confidence 110 01245567777777777666666677777777
Q ss_pred EEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEccccccee
Q 045619 526 VLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWG 584 (615)
Q Consensus 526 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~ 584 (615)
+|+|++|++++..+..|..+++|+.|+|++|+++...+..|..+++|+.|++++|++..
T Consensus 235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp EEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred EEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 77777777766666667777777777777777776666666667777777777777653
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=6.1e-25 Score=220.93 Aligned_cols=178 Identities=18% Similarity=0.148 Sum_probs=89.6
Q ss_pred CcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCCcccccCcccccCCCccceeeccccccC
Q 045619 241 KSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLN 320 (615)
Q Consensus 241 ~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 320 (615)
+.....+.+++.++.++....++|++|++++|.+.+. .+..+..+++|++|++++|.+.
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~---------------------~~~~~~~l~~L~~L~L~~n~l~ 89 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYI---------------------SNSDLQRCVNLQALVLTSNGIN 89 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEE---------------------CTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCeEeeCCCCCcccccccccccCcEEECCCCcCccc---------------------CHHHhccCCCCCEEECCCCccC
Confidence 4444567777777777665556666666666665543 3334445555555555555554
Q ss_pred CCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCC-cccCCCCCccEEEcCCC-cCCccCc
Q 045619 321 GTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFP-RYLADCDELEVVNVGNN-MIGDTFP 398 (615)
Q Consensus 321 ~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~n-~i~~~~~ 398 (615)
+..+..+..+. +|++|++++|.+.+ ++......+++|++|++++|.++.... ..+..+++|++|++++| .++...+
T Consensus 90 ~~~~~~~~~l~-~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 90 TIEEDSFSSLG-SLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp EECTTTTTTCT-TCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred ccCHhhcCCCC-CCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 32233333332 45555555555542 222222223455555555555553222 24555555555555555 3444444
Q ss_pred cccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcC
Q 045619 399 SWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEF 443 (615)
Q Consensus 399 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 443 (615)
..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEP--KSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECT--TTTTTCSEEEEEEEECSCS
T ss_pred HHccCCCCCCEEECCCCCcCccCH--HHHhccccCCeecCCCCcc
Confidence 455555555555555555443222 1224455555555555554
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=7.3e-25 Score=213.38 Aligned_cols=235 Identities=21% Similarity=0.196 Sum_probs=111.3
Q ss_pred CccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCc-ccCCCCcccCCCCCccE
Q 045619 307 SSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNK-LEGPFPRYLADCDELEV 385 (615)
Q Consensus 307 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~l~~L~~ 385 (615)
+++++|++++|.+.+..+..+..+ ++|++|++++|.+.+..+..+... ++|++|++++|. +....+..+..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccC-CCCCEEECCCCccceeCHhhcCCc-cCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 455555555555542222233333 255555555555543333333322 455555555554 44444445555555555
Q ss_pred EEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCC
Q 045619 386 VNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKG 465 (615)
Q Consensus 386 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~ 465 (615)
|++++|.+++..+..+..+++|++|++++|++..... ..+..+++|+.|++++|.+.+..+..
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~--------------- 172 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRISSVPERA--------------- 172 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCEECTTT---------------
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH--hHhccCCCccEEECCCCcccccCHHH---------------
Confidence 5555555555545555555555555555555443211 12234455555555555444221110
Q ss_pred CCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCC
Q 045619 466 SDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANM 545 (615)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 545 (615)
+..+++|+.|++++|++.+..+..+..+++|++|++++|++++..+..|..+
T Consensus 173 ----------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 173 ----------------------------FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp ----------------------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred ----------------------------hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 0113445555555555555555555555555555555555554333445555
Q ss_pred CCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCC
Q 045619 546 TALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRG 589 (615)
Q Consensus 546 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~ 589 (615)
++|++|++++|.+.+.-+.. .-...++.+....+.+....|+.
T Consensus 225 ~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 225 RALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp TTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred cccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 55555555555554322110 11122333334455555555554
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.2e-24 Score=214.35 Aligned_cols=275 Identities=24% Similarity=0.262 Sum_probs=185.5
Q ss_pred eEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCccccc--CchhhhcCCCcccEEE
Q 045619 286 RAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGR--IPDAFANGSCSLRSLD 363 (615)
Q Consensus 286 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~--~~~~~~~~~~~L~~L~ 363 (615)
+.++.+++.+. .+|..+ .+++++|++++|.+. .+|...+...++|++|++++|.+... .+..+... ++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccc-cccCEEE
Confidence 45666666665 334332 367888888888877 56655433334788888888877632 23444433 7888888
Q ss_pred cCCCcccCCCCcccCCCCCccEEEcCCCcCCccCc-cccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCc
Q 045619 364 LNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFP-SWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNE 442 (615)
Q Consensus 364 l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 442 (615)
+++|.++ ..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+....+ ..+..+++|+.|++++|.
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST--TTTTTCTTCCEEECTTCE
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch--hhcccCcCCCEEECCCCc
Confidence 8888777 345557778888888888888766554 567778888888888887765332 234567778888887777
Q ss_pred CcC-CCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCC
Q 045619 443 FTG-FLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDF 521 (615)
Q Consensus 443 l~~-~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l 521 (615)
+.+ ..|.. +..+++|++|++++|++++..+..+..+
T Consensus 162 l~~~~~~~~-------------------------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 198 (306)
T 2z66_A 162 FQENFLPDI-------------------------------------------FTELRNLTFLDLSQCQLEQLSPTAFNSL 198 (306)
T ss_dssp EGGGEECSC-------------------------------------------CTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cccccchhH-------------------------------------------HhhCcCCCEEECCCCCcCCcCHHHhcCC
Confidence 653 11211 1225668888888888887777788888
Q ss_pred CCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcC-cCCeEEcccccceecCCCCCC---CCCccC
Q 045619 522 KSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVT-ALASLNLSYNRLWGRIPRGNQ---FNTFEN 597 (615)
Q Consensus 522 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~p~~~~---~~~~~~ 597 (615)
++|++|++++|++++..+..|..+++|++|++++|++.+..+..+..++ +|++|++++|++.+.-+.... +...+.
T Consensus 199 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~ 278 (306)
T 2z66_A 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 278 (306)
T ss_dssp TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGG
T ss_pred CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhh
Confidence 8888888888888866666778888888888888888887777777774 888888888888755322100 122334
Q ss_pred cccCCCcCccCCCC
Q 045619 598 DSYIGNIHLCGEPL 611 (615)
Q Consensus 598 ~~~~~~~~~~~~~~ 611 (615)
+.+..+...|..|-
T Consensus 279 ~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 279 LLVEVERMECATPS 292 (306)
T ss_dssp GBSCGGGCBEEESG
T ss_pred hhccccccccCCch
Confidence 44455666666553
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=7.9e-24 Score=220.17 Aligned_cols=230 Identities=22% Similarity=0.218 Sum_probs=181.8
Q ss_pred CCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccE
Q 045619 282 PPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRS 361 (615)
Q Consensus 282 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~ 361 (615)
+++++.|++++|.+....+..|..+++|+.|++++|.+.+..+..+..+. +|++|++++|.+.. ++...+..+++|++
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNWLTV-IPSGAFEYLSKLRE 151 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSB-CCTTTSSSCTTCCE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCCcCCc-cChhhhcccCCCCE
Confidence 34555666666666656677788888888888888888744445555554 88899998888874 44443344588999
Q ss_pred EEcCCCcccCCCCcccCCCCCccEEEcCC-CcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccC
Q 045619 362 LDLNSNKLEGPFPRYLADCDELEVVNVGN-NMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSH 440 (615)
Q Consensus 362 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (615)
|++++|.++...+..|..+++|++|++++ +.+....+..|..+++|++|++++|.+.... .+..+++|+.|++++
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP----NLTPLVGLEELEMSG 227 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC----CCTTCTTCCEEECTT
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc----cccccccccEEECcC
Confidence 99999988877677888899999999998 4555555667888999999999999887632 246788999999999
Q ss_pred CcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccC
Q 045619 441 NEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGD 520 (615)
Q Consensus 441 ~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 520 (615)
|.+.+..+..+ ..+++|+.|++++|++.+..+..|..
T Consensus 228 N~l~~~~~~~~-------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 228 NHFPEIRPGSF-------------------------------------------HGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp SCCSEECGGGG-------------------------------------------TTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CcCcccCcccc-------------------------------------------cCccCCCEEEeCCCcCceECHHHhcC
Confidence 99886555331 23577999999999999888999999
Q ss_pred CCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 045619 521 FKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHG 560 (615)
Q Consensus 521 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 560 (615)
+++|++|+|++|++++..+..|..+++|+.|+|++|.+.+
T Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 9999999999999997777888999999999999998765
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=9.5e-24 Score=218.75 Aligned_cols=230 Identities=23% Similarity=0.229 Sum_probs=174.3
Q ss_pred CCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccE
Q 045619 282 PPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRS 361 (615)
Q Consensus 282 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~ 361 (615)
.+.++.|++++|.+....+..|..+++|+.|++++|.+.+..+..+..+ ++|++|++++|.+.. ++...+..+++|++
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL-ANLNTLELFDNRLTT-IPNGAFVYLSKLKE 140 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC-SSCCEEECCSSCCSS-CCTTTSCSCSSCCE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC-ccCCEEECCCCcCCe-eCHhHhhccccCce
Confidence 3444555555555555556677778888888888887773333444444 478888888888773 44333334478888
Q ss_pred EEcCCCcccCCCCcccCCCCCccEEEcCCC-cCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccC
Q 045619 362 LDLNSNKLEGPFPRYLADCDELEVVNVGNN-MIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSH 440 (615)
Q Consensus 362 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (615)
|++++|.++...+..|..+++|++|++++| .+....+..|..+++|++|++++|.+.... .+..+++|+.|++++
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP----NLTPLIKLDELDLSG 216 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC----CCTTCSSCCEEECTT
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc----ccCCCcccCEEECCC
Confidence 888888888666677888888888888884 455555567888888999999988877532 246788999999999
Q ss_pred CcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccC
Q 045619 441 NEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGD 520 (615)
Q Consensus 441 ~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 520 (615)
|.+.+..+..+ ..+++|+.|++++|++.+..+..|..
T Consensus 217 N~l~~~~~~~~-------------------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 217 NHLSAIRPGSF-------------------------------------------QGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp SCCCEECTTTT-------------------------------------------TTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred CccCccChhhh-------------------------------------------ccCccCCEEECCCCceeEEChhhhcC
Confidence 98885544321 22577999999999999988999999
Q ss_pred CCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 045619 521 FKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHG 560 (615)
Q Consensus 521 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 560 (615)
+++|++|+|++|+++...+..|..+++|+.|+|++|.+.+
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 9999999999999997777888999999999999999864
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=217.00 Aligned_cols=279 Identities=20% Similarity=0.248 Sum_probs=174.8
Q ss_pred CCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCC---CCCCCCcEEEcCCCccccccCCCCCCceEEEc
Q 045619 214 NSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ---HPWKNITVLNLRNNTIQGTILVPPPSTRAFLF 290 (615)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l 290 (615)
.++.....+.+++.++ .+|... .++|++|++++|.++.++. ..+++|+.|++++|.+.+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------------- 90 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-------------- 90 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE--------------
T ss_pred CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc--------------
Confidence 3566667888888887 666644 3689999999999998776 344566666666665553
Q ss_pred cCCcccccCcccccCCCccceeeccccccCCCCCCC-hhccccCCcEEEccCCcccccCch-hhhcCCCcccEEEcCCC-
Q 045619 291 SNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPC-LGNFSTQLTILHLNNNKLQGRIPD-AFANGSCSLRSLDLNSN- 367 (615)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~i~~~~~~-~~~~~~~~L~~L~l~~~- 367 (615)
..+..+..+++|++|++++|.+. .++.. +..+ ++|++|++++|.+. .++. .....+++|++|++++|
T Consensus 91 -------~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l-~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 91 -------IEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPL-SSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp -------ECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTC-TTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESS
T ss_pred -------cCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCC-ccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCc
Confidence 34445556666666666666665 34433 2233 36666666666665 2333 22233366666666666
Q ss_pred cccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCC
Q 045619 368 KLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFL 447 (615)
Q Consensus 368 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 447 (615)
.+....+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+.... ...+..+++|+.|++++|.+.+..
T Consensus 161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL--EIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH--HHHHHHTTTEEEEEEESCBCTTCC
T ss_pred cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch--hhhhhhcccccEEECCCCcccccc
Confidence 344444556666677777777777766666666677777777777776653311 111233566777777777666433
Q ss_pred chHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCc----cCCccccCCCC
Q 045619 448 PRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQA----EIPRVLGDFKS 523 (615)
Q Consensus 448 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~----~~~~~l~~l~~ 523 (615)
+..+.. ......++.++++++.+.+ .+|..+..+++
T Consensus 239 ~~~l~~----------------------------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 239 FSELST----------------------------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp CC----------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred cccccc----------------------------------------ccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 221100 0112345566666666553 35667888999
Q ss_pred CcEEeCcCCcCcccCCcc-ccCCCCCCEEeCCCCcccccch
Q 045619 524 LIVLNLSHNGLTGSIPVS-FANMTALESLDLSSNKLHGRIL 563 (615)
Q Consensus 524 L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~ 563 (615)
|++|++++|+++ .+|.. |..+++|++|++++|++.+..|
T Consensus 279 L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 279 LLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 999999999998 55554 5888999999999998887554
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=1.2e-23 Score=204.64 Aligned_cols=252 Identities=20% Similarity=0.204 Sum_probs=179.8
Q ss_pred CCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCc-ccccCchhhhcCCCccc
Q 045619 282 PPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNK-LQGRIPDAFANGSCSLR 360 (615)
Q Consensus 282 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-i~~~~~~~~~~~~~~L~ 360 (615)
++++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+. +|++|++++|. +....+..+. .+++|+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~l~~~~~~~~~-~l~~L~ 108 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFH-GLGRLH 108 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTTCCCCCTTTTT-TCTTCC
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCCccccCHHHhc-CCcCCC
Confidence 34444555555555545556677778888888888777644455555554 78888888886 5533344443 347888
Q ss_pred EEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccC
Q 045619 361 SLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSH 440 (615)
Q Consensus 361 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (615)
+|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+..... ..+..+++|+.|++++
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCS
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH--HHhcCccccCEEECCC
Confidence 88888888887777778888888888888888877777778888888888888888765322 2346678888888888
Q ss_pred CcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccC
Q 045619 441 NEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGD 520 (615)
Q Consensus 441 ~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 520 (615)
|.+.+..+..+ ..+++|+.|++++|++++..+..+..
T Consensus 187 n~l~~~~~~~~-------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 187 NRVAHVHPHAF-------------------------------------------RDLGRLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp SCCCEECTTTT-------------------------------------------TTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred CcccccCHhHc-------------------------------------------cCcccccEeeCCCCcCCcCCHHHccc
Confidence 88875544321 22567999999999999877778999
Q ss_pred CCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhh--cCcCCeEEccccc
Q 045619 521 FKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLS--VTALASLNLSYNR 581 (615)
Q Consensus 521 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~l~~n~ 581 (615)
+++|++|++++|.+....+. ......++.+..+.+.+.+..|..+.+ +..++..++.+|.
T Consensus 224 l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp CTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred CcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 99999999999999743221 122345666778888888888888765 5666666666663
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.2e-22 Score=216.43 Aligned_cols=270 Identities=23% Similarity=0.272 Sum_probs=196.1
Q ss_pred CcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCCccc
Q 045619 217 ELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLF 296 (615)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~ 296 (615)
+++.|+++++.++ .+|.... ++|+.|++++|.++.++. .+++|++|++++|.+++... .+++|++|++++|.+.
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPV-LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCCC-CCTTCCEEEECSCCCC
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCCC-CCCCCCEEECcCCcCC
Confidence 4677777777776 5555442 677777777777776665 56777777777777765333 6777788888777776
Q ss_pred ccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcc
Q 045619 297 GQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRY 376 (615)
Q Consensus 297 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 376 (615)
.. |. .+++|+.|++++|.+. .+|..+ ++|++|++++|.+.+ ++. .+++|+.|++++|.++. +|
T Consensus 115 ~l-~~---~l~~L~~L~L~~N~l~-~lp~~l----~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~-l~-- 177 (622)
T 3g06_A 115 HL-PA---LPSGLCKLWIFGNQLT-SLPVLP----PGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTS-LP-- 177 (622)
T ss_dssp CC-CC---CCTTCCEEECCSSCCS-CCCCCC----TTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CC--
T ss_pred CC-CC---CCCCcCEEECCCCCCC-cCCCCC----CCCCEEECcCCcCCC-cCC----ccCCCCEEECCCCCCCC-Cc--
Confidence 43 33 5678888888888887 566542 478888888888773 333 23678888888888874 33
Q ss_pred cCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchh
Q 045619 377 LADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLE 456 (615)
Q Consensus 377 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 456 (615)
..+++|+.|++++|.+++.. . .+++|+.|++++|.+.... ...++|+.|++++|.+++ +|.
T Consensus 178 -~~~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~L~~-lp~------- 238 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLTSLP------ALPSGLKELIVSGNRLTS-LPV------- 238 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSSCC------CCCTTCCEEECCSSCCSC-CCC-------
T ss_pred -ccCCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCcccccC------CCCCCCCEEEccCCccCc-CCC-------
Confidence 44678888888888886532 2 3478888888888876422 124778888888888774 221
Q ss_pred hhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcc
Q 045619 457 AMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTG 536 (615)
Q Consensus 457 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 536 (615)
.+++|+.|++++|+++. +|. .+++|++|+|++|+++
T Consensus 239 ---------------------------------------~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~- 274 (622)
T 3g06_A 239 ---------------------------------------LPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT- 274 (622)
T ss_dssp ---------------------------------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-
T ss_pred ---------------------------------------CCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-
Confidence 14668899999998884 444 6788999999999998
Q ss_pred cCCccccCCCCCCEEeCCCCcccccchhhhhhcCcC
Q 045619 537 SIPVSFANMTALESLDLSSNKLHGRILEQLLSVTAL 572 (615)
Q Consensus 537 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 572 (615)
.+|..|..+++|+.|+|++|.+.+..|..+..+++.
T Consensus 275 ~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310 (622)
T ss_dssp SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence 778889999999999999999998888888776644
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=4.5e-24 Score=211.50 Aligned_cols=240 Identities=20% Similarity=0.264 Sum_probs=191.3
Q ss_pred CCCCCCcccceeeeC--------CCCCcEEEEecCCCCceeecCCcccccccccccccccccccCCCCChhhhcCCCCce
Q 045619 5 AEGTDCCSWDGVTCD--------NVTGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTY 76 (615)
Q Consensus 5 ~~~~~~~~~~~~~~~--------~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~~~l~~l~~L~~ 76 (615)
....++|.|.|++|. ....++++|+++++.++ .++. .++.+.+|++|++.++....+|..+..+++|++
T Consensus 55 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~ 131 (328)
T 4fcg_A 55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD--QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLET 131 (328)
T ss_dssp TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS--CGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSE
T ss_pred cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh--hhhhCCCCCEEECCCCCccchhHHHhccCCCCE
Confidence 457889999999984 23478999999999987 4555 677899999999988888889998999999999
Q ss_pred eeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhcc---------CCCCCCEEecccccCCCCCchhhhccc
Q 045619 77 LNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLAS---------NLTKLSVLNLGWADRSLIEPFSVLNLS 147 (615)
Q Consensus 77 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~~~l~ 147 (615)
|++++|.++ .+|..+.++++|++|++++|.+. +.+|..+. ++++|++|++++|.+. ..|..+..+
T Consensus 132 L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~---~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l- 205 (328)
T 4fcg_A 132 LTLARNPLR-ALPASIASLNRLRELSIRACPEL---TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL- 205 (328)
T ss_dssp EEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC---CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC-
T ss_pred EECCCCccc-cCcHHHhcCcCCCEEECCCCCCc---cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC-
Confidence 999999998 77888999999999999998765 55665554 4899999999999887 456667777
Q ss_pred ccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCccc----cccCCCCcCEEec
Q 045619 148 STITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTG----FLRNSEELEFLDL 223 (615)
Q Consensus 148 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~L~~L~l 223 (615)
++|++|++++|.+.+ .+..+..+++|++|++++|.+.......+...++|++|++++|.+.. .+..+++|++|++
T Consensus 206 ~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 899999999999884 66678889999999999987666555556677888888888876544 3566788888888
Q ss_pred CCcccCcccccccccCCCcCcEEEccCCcccC
Q 045619 224 SNNRIHGRISKSDSQGWKSLTYLDISNNFLTQ 255 (615)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 255 (615)
++|.+.+.+|..+ ..+++++.+++..+.+..
T Consensus 285 ~~n~~~~~iP~~l-~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 285 RGCVNLSRLPSLI-AQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TTCTTCCCCCGGG-GGSCTTCEEECCGGGSCC
T ss_pred CCCCchhhccHHH-hhccCceEEeCCHHHHHH
Confidence 8887776776655 777888888777665543
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.2e-22 Score=216.40 Aligned_cols=263 Identities=26% Similarity=0.297 Sum_probs=211.7
Q ss_pred CcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEEccCCcccccCcccccCCCccceeeccccccC
Q 045619 241 KSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLN 320 (615)
Q Consensus 241 ~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 320 (615)
.+++.|+++++.++.++....++|+.|++++|.+..... .+++|++|++++|.+.+ +|. .+++|++|++++|.+.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC
Confidence 458999999999998888777899999999999885443 68899999999998874 444 6789999999999887
Q ss_pred CCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccc
Q 045619 321 GTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSW 400 (615)
Q Consensus 321 ~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 400 (615)
.+|. ..++|+.|++++|.+. .+|.. +++|++|++++|.+++ +|. .+++|+.|++++|.++.. |
T Consensus 115 -~l~~----~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~-- 177 (622)
T 3g06_A 115 -HLPA----LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSL-P-- 177 (622)
T ss_dssp -CCCC----CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-C--
T ss_pred -CCCC----CCCCcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCC-c--
Confidence 5665 2358999999999887 34443 3789999999998874 332 357889999999998664 3
Q ss_pred cCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCcccccccccccc
Q 045619 401 LGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQD 480 (615)
Q Consensus 401 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 480 (615)
..+++|+.|++++|.+.... ...++|+.|++++|.+.. +|.
T Consensus 178 -~~~~~L~~L~Ls~N~l~~l~------~~~~~L~~L~L~~N~l~~-l~~------------------------------- 218 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLASLP------TLPSELYKLWAYNNRLTS-LPA------------------------------- 218 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSS-CCC-------------------------------
T ss_pred -ccCCCCcEEECCCCCCCCCC------CccchhhEEECcCCcccc-cCC-------------------------------
Confidence 45788999999999887522 124788999999888773 221
Q ss_pred ceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 045619 481 SVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHG 560 (615)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 560 (615)
.+++|+.|++++|++++ +| ..+++|++|+|++|+++ .+|. .+++|+.|++++|+++
T Consensus 219 ---------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~- 274 (622)
T 3g06_A 219 ---------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT- 274 (622)
T ss_dssp ---------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-
T ss_pred ---------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-
Confidence 13669999999999985 44 56789999999999999 5665 5789999999999999
Q ss_pred cchhhhhhcCcCCeEEcccccceecCCC
Q 045619 561 RILEQLLSVTALASLNLSYNRLWGRIPR 588 (615)
Q Consensus 561 ~~~~~~~~l~~L~~L~l~~n~i~~~~p~ 588 (615)
.+|..+.++++|+.|++++|++.+.+|.
T Consensus 275 ~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 6688899999999999999999987765
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.3e-23 Score=208.29 Aligned_cols=226 Identities=19% Similarity=0.214 Sum_probs=160.8
Q ss_pred CCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccE
Q 045619 306 LSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEV 385 (615)
Q Consensus 306 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 385 (615)
.++++.|++++|.+. .+|..++.+. +|++|++++|.+. .+|..+... ++|++|++++|.++ .+|..+..+++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l-~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGG-TTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred ccceeEEEccCCCch-hcChhhhhCC-CCCEEECCCCCcc-chhHHHhcc-CCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 356666666666665 5666655543 6666666666666 555544333 56666666666666 55666666666777
Q ss_pred EEcCCCcCCccCccccC---------CCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchh
Q 045619 386 VNVGNNMIGDTFPSWLG---------CLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLE 456 (615)
Q Consensus 386 L~l~~n~i~~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 456 (615)
|++++|.+.+..|..+. .+++|++|++++|.+.. .+ ..+..+++|+.|++++|.+.+ +|.. +
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp--~~l~~l~~L~~L~L~~N~l~~-l~~~-l---- 225 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LP--ASIANLQNLKSLKIRNSPLSA-LGPA-I---- 225 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CC--GGGGGCTTCCEEEEESSCCCC-CCGG-G----
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-ch--HhhcCCCCCCEEEccCCCCCc-Cchh-h----
Confidence 77766665555555443 37777777777777662 22 224566777777777777764 2221 1
Q ss_pred hhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcc
Q 045619 457 AMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTG 536 (615)
Q Consensus 457 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 536 (615)
..+++|+.|++++|.+.+..|..++.+++|++|+|++|++.+
T Consensus 226 --------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 226 --------------------------------------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp --------------------------------------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred --------------------------------------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 225668889999988888888889999999999999998888
Q ss_pred cCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccce
Q 045619 537 SIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLW 583 (615)
Q Consensus 537 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 583 (615)
.+|..+..+++|++|+|++|.+.+.+|..+.++++|+.+++..+.+.
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88988999999999999999988899999999999999988877653
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2.7e-27 Score=256.08 Aligned_cols=87 Identities=10% Similarity=-0.015 Sum_probs=61.7
Q ss_pred ccccceEeCCCCccCccCCccc-cCCCCCcEEeCcCCcCcccCCc-cccCCCCCCEEeCCCCcccccchhhh-hhcCcCC
Q 045619 497 ITILTTIDLSSNQFQAEIPRVL-GDFKSLIVLNLSHNGLTGSIPV-SFANMTALESLDLSSNKLHGRILEQL-LSVTALA 573 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~ 573 (615)
+++|+.|++++|++++.....+ ..+++|++|+|++|.+++.... ....+++|++|++++|+++......+ ..++.|+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLN 534 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence 6778889998888876544444 6688899999999988644333 34557889999999998865555555 5567777
Q ss_pred eEEcccccce
Q 045619 574 SLNLSYNRLW 583 (615)
Q Consensus 574 ~L~l~~n~i~ 583 (615)
...+..+.-.
T Consensus 535 i~~~~~~~~~ 544 (594)
T 2p1m_B 535 VEVIDERGAP 544 (594)
T ss_dssp EEEECSSSCG
T ss_pred EEEecCCCcc
Confidence 6666665443
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=9.8e-26 Score=243.69 Aligned_cols=416 Identities=15% Similarity=0.103 Sum_probs=288.0
Q ss_pred CCcEEEEecCCCCce---eecCC---------cc-cccccccccccccccccCCC-CChhhhc-CCC-CceeeCCCCc-c
Q 045619 22 TGNVIGLDLHCSMLE---GTIDD---------NS-TLFHLLRLQSLAFNNFNGSQ-ISPEFLR-LKE-LTYLNLSYTR-F 84 (615)
Q Consensus 22 ~~~l~~l~l~~~~~~---~~~~~---------~~-~~~~~~~L~~L~~~~~~~~~-l~~~l~~-l~~-L~~L~L~~~~-~ 84 (615)
.+++++|+++++... +..+. .. ....+++|++|++.+..... .+..+.. ++. |++|++++|. +
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 467999999885321 11111 00 11267889999998775331 1233444 444 9999999987 3
Q ss_pred CCC-CchhhhcCCCCcEEecCCCcCccccCc-chhhccCCCCCCEEecccccCCCCCchhh---hcccccccEEEcCCCC
Q 045619 85 SGL-LPQEISHMSKLTHLDLFDCDMTIEQKS-FDLLASNLTKLSVLNLGWADRSLIEPFSV---LNLSSTITVLDLSGTG 159 (615)
Q Consensus 85 ~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~~L~~L~l~~~~ 159 (615)
+.. ++....++++|++|++++|.+...... ++.....+++|++|+++++.+.......+ ...+++|++|++++|.
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 211 223335899999999999987522111 56677889999999999998864333322 2223999999999998
Q ss_pred CccCCCccccCCCCCcEEEcccCCCc---cccCCCCCCCCCccEEECCCCC---ccccccCCCCcCEEecCCcccCcccc
Q 045619 160 MRGNFPREIFQLPHLQELHLSSNKYL---TGYLPESNWSTSLRELDLSFSN---FTGFLRNSEELEFLDLSNNRIHGRIS 233 (615)
Q Consensus 160 ~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~ 233 (615)
+.+ .+..+..+++|++|+++..... ......+...++|+.++++... +...+..+++|++|++++|.+.+...
T Consensus 232 ~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 232 ILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp GGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred HHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 874 5677888999999999864222 1222344556899999997653 33457788999999999999765444
Q ss_pred cccccCCCcCcEEEccCCcccCcCC----CCCCCCcEEEcCC-----------CccccccCC----CCCCceEEEccCCc
Q 045619 234 KSDSQGWKSLTYLDISNNFLTQIEQ----HPWKNITVLNLRN-----------NTIQGTILV----PPPSTRAFLFSNNK 294 (615)
Q Consensus 234 ~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~-----------~~i~~~~~~----~~~~L~~L~l~~~~ 294 (615)
...+..+++|++|++. +.+.+... ..+++|++|++++ +.+++.... .+++|++|++..+.
T Consensus 311 ~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp HHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred HHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence 4455889999999998 33333221 3568899999994 455543222 28999999998888
Q ss_pred ccccCcccccC-CCccceeecc----ccccCCC-----CCCChhccccCCcEEEccCCc--ccccCchhhhcCCCcccEE
Q 045619 295 LFGQIPPSICS-LSSLEYLSLS----HNNLNGT-----IPPCLGNFSTQLTILHLNNNK--LQGRIPDAFANGSCSLRSL 362 (615)
Q Consensus 295 ~~~~~~~~l~~-~~~L~~L~l~----~~~l~~~-----~~~~~~~~~~~L~~L~L~~~~--i~~~~~~~~~~~~~~L~~L 362 (615)
+.+..+..+.. +++|+.|+++ .+.+++. ++..+..+ ++|++|+++.|. +.+.....+...+++|++|
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~-~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L 468 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC-KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC-TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC-CCCCEEEEecCCCCccHHHHHHHHHhCccceEe
Confidence 88766666665 8999999997 4455521 11113333 589999998654 6655555666656899999
Q ss_pred EcCCCcccCC-CCcccCCCCCccEEEcCCCcCCccCcc-ccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccC
Q 045619 363 DLNSNKLEGP-FPRYLADCDELEVVNVGNNMIGDTFPS-WLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSH 440 (615)
Q Consensus 363 ~l~~~~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 440 (615)
++++|.+++. .+..+.++++|++|++++|.+++.... ....+++|++|++++|+++...... ....++.+....+..
T Consensus 469 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~-l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 469 LLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDL-MQMARPYWNIELIPS 547 (592)
T ss_dssp EECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTG-GGGCCTTEEEEEECC
T ss_pred eccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHH-HHHhCCCcEEEEecC
Confidence 9999998753 344567899999999999998765443 4457999999999999987643322 224567776666655
Q ss_pred C
Q 045619 441 N 441 (615)
Q Consensus 441 ~ 441 (615)
+
T Consensus 548 ~ 548 (592)
T 3ogk_B 548 R 548 (592)
T ss_dssp C
T ss_pred c
Confidence 4
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=1.9e-26 Score=249.41 Aligned_cols=429 Identities=14% Similarity=0.062 Sum_probs=224.1
Q ss_pred ceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCc------------chhhccCCCCCCEEecccccCCCCCchh
Q 045619 75 TYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKS------------FDLLASNLTKLSVLNLGWADRSLIEPFS 142 (615)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 142 (615)
+.+++.++... .....+..+++|++|+++++........ ++.....+++|++|++++|.+....+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 35666655432 2334567889999999998753211010 1223345677777777777665554445
Q ss_pred hhcccccccEEEcCCC-CCccC-CCccccCCCCCcEEEcccCCCccccCC---C-CCCCCCccEEECCCCC--cc-----
Q 045619 143 VLNLSSTITVLDLSGT-GMRGN-FPREIFQLPHLQELHLSSNKYLTGYLP---E-SNWSTSLRELDLSFSN--FT----- 209 (615)
Q Consensus 143 ~~~l~~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~---~-~~~~~~L~~L~l~~~~--~~----- 209 (615)
+...+++|++|++++| .+... .+..+..+++|++|++++|.+...... . ....++|++|+++++. +.
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 5422377777777777 33322 222233567777777777643221111 1 1122444444444443 11
Q ss_pred ccccCCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCcccCcCCCCCCCCcEEEcCCCccccccCCCCCCceEEE
Q 045619 210 GFLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITVLNLRNNTIQGTILVPPPSTRAFL 289 (615)
Q Consensus 210 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~ 289 (615)
.....+++|++|++++|...+.++ ..+..+++|++|+++.+.. .
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~-----------------------------------~ 248 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGYTA-----------------------------------E 248 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBCCC-----------------------------------C
T ss_pred HHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccccC-----------------------------------c
Confidence 012223444444444441111111 1113333344333332210 0
Q ss_pred ccCCcccccCcccccCCCcccee-eccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCc
Q 045619 290 FSNNKLFGQIPPSICSLSSLEYL-SLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNK 368 (615)
Q Consensus 290 l~~~~~~~~~~~~l~~~~~L~~L-~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~ 368 (615)
+..+.+. ..+..+.++++|+.+ .+.+.... .++..+... ++|++|++++|.+.+.....+...+++|++|++++|
T Consensus 249 ~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~-~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~- 324 (594)
T 2p1m_B 249 VRPDVYS-GLSVALSGCKELRCLSGFWDAVPA-YLPAVYSVC-SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY- 324 (594)
T ss_dssp CCHHHHH-HHHHHHHTCTTCCEEECCBTCCGG-GGGGGHHHH-TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-
T ss_pred cchhhHH-HHHHHHhcCCCcccccCCcccchh-hHHHHHHhh-CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-
Confidence 1111111 123355667777776 33332221 233332233 367777777777554333333344467777777766
Q ss_pred ccCC-CCcccCCCCCccEEEcCC---------CcCCccCccccC-CCCCCcEEEccCCcccCccCCCccCCCCCcccEEE
Q 045619 369 LEGP-FPRYLADCDELEVVNVGN---------NMIGDTFPSWLG-CLPGLNILVLRSNRFYGPLCESNIMFPFQALRIID 437 (615)
Q Consensus 369 i~~~-~~~~~~~l~~L~~L~l~~---------n~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 437 (615)
+... .+.....+++|++|++.+ +.+++.....+. .+++|+.|.+..+.++...... ....+++|+.|+
T Consensus 325 ~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~-l~~~~~~L~~L~ 403 (594)
T 2p1m_B 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT-IARNRPNMTRFR 403 (594)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHH-HHHHCTTCCEEE
T ss_pred cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHH-HHhhCCCcceeE
Confidence 3321 111222466677777633 333333222222 3566666655555443311111 112345566666
Q ss_pred cc--C----CcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccC
Q 045619 438 LS--H----NEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQ 511 (615)
Q Consensus 438 l~--~----~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 511 (615)
++ + +.+++..... ........+++|+.|++++ .++
T Consensus 404 L~~~~~~~~~~l~~~~~~~--------------------------------------~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 404 LCIIEPKAPDYLTLEPLDI--------------------------------------GFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp EEESSTTCCCTTTCCCTHH--------------------------------------HHHHHHHHCTTCCEEECCS-SCC
T ss_pred eecccCCCcccccCCchhh--------------------------------------HHHHHHhhCCCccEEeecC-ccc
Confidence 65 2 2222110000 0011234578899999987 677
Q ss_pred ccCCccccC-CCCCcEEeCcCCcCcccCCccc-cCCCCCCEEeCCCCcccccchh-hhhhcCcCCeEEccccccee
Q 045619 512 AEIPRVLGD-FKSLIVLNLSHNGLTGSIPVSF-ANMTALESLDLSSNKLHGRILE-QLLSVTALASLNLSYNRLWG 584 (615)
Q Consensus 512 ~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~i~~ 584 (615)
+.....+.. +++|++|+|++|++++..+..+ ..+++|++|+|++|.++...+. ....+++|++|++++|++..
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 655555554 8999999999999986555555 6689999999999999765554 44568999999999999843
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=3.1e-25 Score=218.75 Aligned_cols=206 Identities=22% Similarity=0.241 Sum_probs=125.2
Q ss_pred CCcEEEccCCcccccCchhhh-cCCCcccEEEcCCCcccCCCCcccCCC-----CCccEEEcCCCcCCccCccccCCCCC
Q 045619 333 QLTILHLNNNKLQGRIPDAFA-NGSCSLRSLDLNSNKLEGPFPRYLADC-----DELEVVNVGNNMIGDTFPSWLGCLPG 406 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~l~~ 406 (615)
+|++|++++|.+.+..|..++ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..+..+..+++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 555555555555544444431 3335555566655555544 4444443 55666666666665555555666666
Q ss_pred CcEEEccCCcccCcc--CCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeE
Q 045619 407 LNILVLRSNRFYGPL--CESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTV 484 (615)
Q Consensus 407 L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 484 (615)
|++|++++|++.+.. +....+..+++|+.|++++|.+.+. +.
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~----------------------------------- 218 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-SG----------------------------------- 218 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-HH-----------------------------------
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-HH-----------------------------------
Confidence 666666666543321 1111224455666666666655421 00
Q ss_pred EecCchhhHHhhccccceEeCCCCccCccCC-ccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccch
Q 045619 485 TVKGRDVVLKRIITILTTIDLSSNQFQAEIP-RVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRIL 563 (615)
Q Consensus 485 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 563 (615)
.....+..+++|+.|++++|++.+..+ ..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |
T Consensus 219 ----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p 290 (312)
T 1wwl_A 219 ----VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-P 290 (312)
T ss_dssp ----HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-C
T ss_pred ----HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-h
Confidence 011122235678888888888886553 45667788888888888888 6777665 7888888888888865 5
Q ss_pred hhhhhcCcCCeEEccccccee
Q 045619 564 EQLLSVTALASLNLSYNRLWG 584 (615)
Q Consensus 564 ~~~~~l~~L~~L~l~~n~i~~ 584 (615)
. +..+++|++|++++|++.+
T Consensus 291 ~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 291 S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C-TTTSCEEEEEECTTCTTTC
T ss_pred h-HhhCCCCCEEeccCCCCCC
Confidence 4 7888888888888888854
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=1.9e-24 Score=213.60 Aligned_cols=264 Identities=20% Similarity=0.211 Sum_probs=189.3
Q ss_pred cEEEcCCCcccc---ccCCCCCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccC
Q 045619 265 TVLNLRNNTIQG---TILVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNN 341 (615)
Q Consensus 265 ~~L~l~~~~i~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~ 341 (615)
+..+++.+.+.. ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ +..+ ++|++|++++
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l-~~L~~L~Ls~ 89 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNN 89 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTC-TTCCEEECCS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhc-CCCCEEECcC
Confidence 334445554432 122336678888888888877766777888888888888887763332 4444 4788888888
Q ss_pred CcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCcc
Q 045619 342 NKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPL 421 (615)
Q Consensus 342 ~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 421 (615)
|.+.+. +. . ++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+....
T Consensus 90 n~l~~l-~~----~-~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 90 NYVQEL-LV----G-PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SEEEEE-EE----C-TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred Cccccc-cC----C-CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 877632 21 1 6788888888877754333 3567888888888887777777777788888888888776533
Q ss_pred CCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccc
Q 045619 422 CESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILT 501 (615)
Q Consensus 422 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 501 (615)
+... ...+++|+.|++++|.+.+..+. ..+++|+
T Consensus 161 ~~~~-~~~l~~L~~L~L~~N~l~~~~~~---------------------------------------------~~l~~L~ 194 (317)
T 3o53_A 161 FAEL-AASSDTLEHLNLQYNFIYDVKGQ---------------------------------------------VVFAKLK 194 (317)
T ss_dssp GGGG-GGGTTTCCEEECTTSCCCEEECC---------------------------------------------CCCTTCC
T ss_pred HHHH-hhccCcCCEEECCCCcCcccccc---------------------------------------------cccccCC
Confidence 3221 13467778888887776632110 0157799
Q ss_pred eEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCccc-ccchhhhhhcCcCCeEEcccc
Q 045619 502 TIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLH-GRILEQLLSVTALASLNLSYN 580 (615)
Q Consensus 502 ~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n 580 (615)
+|++++|++++. +..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +..+..+..++.|+.++++++
T Consensus 195 ~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 195 TLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp EEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred EEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 999999999964 445999999999999999999 67888999999999999999998 678888999999999999965
Q ss_pred c-ceecCCC
Q 045619 581 R-LWGRIPR 588 (615)
Q Consensus 581 ~-i~~~~p~ 588 (615)
+ +.+..|.
T Consensus 273 ~~l~~~~~~ 281 (317)
T 3o53_A 273 KKLTGQNEE 281 (317)
T ss_dssp HHHHSSSSC
T ss_pred hhccCCchh
Confidence 4 4444444
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=1.2e-22 Score=200.06 Aligned_cols=204 Identities=19% Similarity=0.130 Sum_probs=127.6
Q ss_pred cccccccccccccccccCCCCChhhhcCCCCceeeCCCCccC-CCCchhhh-------cCCCCcEEecCCCcCccccCcc
Q 045619 44 TLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFS-GLLPQEIS-------HMSKLTHLDLFDCDMTIEQKSF 115 (615)
Q Consensus 44 ~~~~~~~L~~L~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~-~~~~~~l~-------~l~~L~~L~L~~~~~~~~~~~~ 115 (615)
.+....+|+.+.+.+... .+|..+... |++|++++|.+. ...|..+. ++++|++|++++|.+. +.+
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~ 111 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT---GTA 111 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB---SCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc---chh
Confidence 445667788887777777 588777654 888888888874 34555554 6888888888888876 555
Q ss_pred hhhc--cCCCCCCEEecccccCCCCCchhhhcc----cccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccc--
Q 045619 116 DLLA--SNLTKLSVLNLGWADRSLIEPFSVLNL----SSTITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTG-- 187 (615)
Q Consensus 116 ~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~l----~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-- 187 (615)
|..+ ..+++|++|++++|.+... +..+..+ +++|++|++++|++.+..+..++.+++|++|++++|++...
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 112 PPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 6554 7888888888888888776 5555544 27788888888888776667788888888888888854321
Q ss_pred cCCC--CCCCCCccEEECCCCCccc-------cccCCCCcCEEecCCcccCcccccccccCCCcCcEEEccCCccc
Q 045619 188 YLPE--SNWSTSLRELDLSFSNFTG-------FLRNSEELEFLDLSNNRIHGRISKSDSQGWKSLTYLDISNNFLT 254 (615)
Q Consensus 188 ~~~~--~~~~~~L~~L~l~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 254 (615)
.... +...++|++|++++|.+.. .+..+++|++|++++|.+.+..+...+..+++|++|++++|.++
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 0111 1334555555555555441 12233444455554444443222222233344444444444443
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=5.4e-23 Score=214.91 Aligned_cols=237 Identities=22% Similarity=0.220 Sum_probs=162.8
Q ss_pred CCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccE
Q 045619 282 PPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRS 361 (615)
Q Consensus 282 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~ 361 (615)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..| +..+ ++|+.|++++|.+.+. +. . ++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l-~~----~-~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQEL-LV----G-PSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTC-TTCCEEECCSSEEEEE-EE----C-TTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccC-CCCCEEEecCCcCCCC-CC----C-CCcCE
Confidence 3456666666666665566677777777777777777764333 3333 3677777777776632 21 1 57777
Q ss_pred EEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCC
Q 045619 362 LDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHN 441 (615)
Q Consensus 362 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 441 (615)
|++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+... ...+++|+.|++++|
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYN 179 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTS
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecCCC
Confidence 77777777654332 34667777777777777767677777777777777777665433221 124667777777777
Q ss_pred cCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCC
Q 045619 442 EFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDF 521 (615)
Q Consensus 442 ~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l 521 (615)
.+.+..+. ..+++|+.|++++|.+++..+ .+..+
T Consensus 180 ~l~~~~~~---------------------------------------------~~l~~L~~L~Ls~N~l~~~~~-~~~~l 213 (487)
T 3oja_A 180 FIYDVKGQ---------------------------------------------VVFAKLKTLDLSSNKLAFMGP-EFQSA 213 (487)
T ss_dssp CCCEEECC---------------------------------------------CCCTTCCEEECCSSCCCEECG-GGGGG
T ss_pred cccccccc---------------------------------------------ccCCCCCEEECCCCCCCCCCH-hHcCC
Confidence 76633110 014678888999988886444 48888
Q ss_pred CCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCccc-ccchhhhhhcCcCCeEEcc
Q 045619 522 KSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLH-GRILEQLLSVTALASLNLS 578 (615)
Q Consensus 522 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~ 578 (615)
++|+.|+|++|.++ .+|..+..+++|+.|++++|.+. +..|..+..++.|+.++++
T Consensus 214 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999999999988 47778888899999999999887 5667777888888888876
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=4.4e-23 Score=215.60 Aligned_cols=247 Identities=23% Similarity=0.179 Sum_probs=184.3
Q ss_pred CCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCcc
Q 045619 305 SLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384 (615)
Q Consensus 305 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 384 (615)
.+++|+.|++++|.+.+..|..+..+. +|+.|++++|.+.+..+ + ..+++|++|++++|.+++.. ..++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l-~~l~~L~~L~Ls~N~l~~l~-----~~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--L-ESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--C-TTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--c-ccCCCCCEEEecCCcCCCCC-----CCCCcC
Confidence 445888888888888754455565554 88888888888875444 3 34478888888888887432 237888
Q ss_pred EEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccC
Q 045619 385 VVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEK 464 (615)
Q Consensus 385 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~ 464 (615)
+|++++|.+++..+. .+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..|..+.
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~l~------------ 165 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTVNFAELA------------ 165 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGB--CGGGGSSEEEEECTTSCCCEEEGGGGG------------
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCch--hhcCCCCCCEEECCCCCCCCcChHHHh------------
Confidence 888888888776554 357788888888888764333 235678888888888888765554321
Q ss_pred CCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccC
Q 045619 465 GSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFAN 544 (615)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 544 (615)
..+++|+.|++++|.+++.. .+..+++|++|+|++|++++ +|..|..
T Consensus 166 ------------------------------~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~ 212 (487)
T 3oja_A 166 ------------------------------ASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQS 212 (487)
T ss_dssp ------------------------------GGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGG
T ss_pred ------------------------------hhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcC
Confidence 12567999999999998653 34569999999999999995 5556899
Q ss_pred CCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccce-ecCCCC-CCCCCccCcccC-------CCcCccCCCC
Q 045619 545 MTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLW-GRIPRG-NQFNTFENDSYI-------GNIHLCGEPL 611 (615)
Q Consensus 545 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~-~~~p~~-~~~~~~~~~~~~-------~~~~~~~~~~ 611 (615)
+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.. ..++.++.+.+. +++..|+++.
T Consensus 213 l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 213 AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 9999999999999995 6777889999999999999998 445442 335566666665 7888887764
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=3.9e-21 Score=185.15 Aligned_cols=202 Identities=24% Similarity=0.258 Sum_probs=114.5
Q ss_pred ccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEE
Q 045619 308 SLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVN 387 (615)
Q Consensus 308 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 387 (615)
..+.++++++.+. .+|..+. +++++|++++|.+.+..+..+. .+++|++|++++|.++...+..|.++++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFH-RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSS-SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhc-CCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 4566777777766 5565432 3577777777776633333333 336777777777776655555566667777777
Q ss_pred cCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCC
Q 045619 388 VGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSD 467 (615)
Q Consensus 388 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~ 467 (615)
+++|.+++..+..|..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+.. +
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~-~--------------- 153 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP--RVFDSLTKLTYLSLGYNELQSLPKGV-F--------------- 153 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTT-T---------------
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH--HHhCcCcCCCEEECCCCcCCccCHhH-c---------------
Confidence 77777766666666666667777776666654222 22345556666666655554222110 0
Q ss_pred CccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCC
Q 045619 468 GLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTA 547 (615)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 547 (615)
..+++|++|++++|++.+..+..|..+++|++|++++|++++..+..|..+++
T Consensus 154 ---------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 154 ---------------------------DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp ---------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ---------------------------cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 11344555555555555544445555555556666555555433444555555
Q ss_pred CCEEeCCCCccc
Q 045619 548 LESLDLSSNKLH 559 (615)
Q Consensus 548 L~~L~l~~n~~~ 559 (615)
|+.|++++|.+.
T Consensus 207 L~~L~l~~N~~~ 218 (270)
T 2o6q_A 207 LKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCBC
T ss_pred CCEEEecCCCee
Confidence 555555555543
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=2.4e-22 Score=198.43 Aligned_cols=257 Identities=21% Similarity=0.157 Sum_probs=177.6
Q ss_pred ceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEc
Q 045619 285 TRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDL 364 (615)
Q Consensus 285 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l 364 (615)
++..+++.+.+.......+..+++|++|++++|.+.+..|..+..+. +|++|++++|.+.+..+ + ..+++|++|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~-~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--L-ESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--E-TTCTTCCEEEC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--h-hhcCCCCEEEC
Confidence 34445555555544444555667788888888877743344455443 78888888887764433 3 33477888888
Q ss_pred CCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCc
Q 045619 365 NSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFT 444 (615)
Q Consensus 365 ~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 444 (615)
++|.+++.. ..++|++|++++|.+++..+. .+++|+.|++++|++....+ ..+..+++|+.|++++|.+.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG--BCTGGGSSEEEEECTTSCCC
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc--hhhhccCCCCEEECCCCCCC
Confidence 888776332 237788888888877665443 35667788888877765332 22355677778888777776
Q ss_pred CCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCC
Q 045619 445 GFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSL 524 (615)
Q Consensus 445 ~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L 524 (615)
+..+..+. ..+++|++|++++|++++. + ....+++|
T Consensus 158 ~~~~~~~~------------------------------------------~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L 193 (317)
T 3o53_A 158 TVNFAELA------------------------------------------ASSDTLEHLNLQYNFIYDV-K-GQVVFAKL 193 (317)
T ss_dssp EEEGGGGG------------------------------------------GGTTTCCEEECTTSCCCEE-E-CCCCCTTC
T ss_pred cccHHHHh------------------------------------------hccCcCCEEECCCCcCccc-c-cccccccC
Confidence 44332221 1256799999999999865 2 34458999
Q ss_pred cEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccce-ecCCCC-CCCCCccCcccC
Q 045619 525 IVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLW-GRIPRG-NQFNTFENDSYI 601 (615)
Q Consensus 525 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~-~~~p~~-~~~~~~~~~~~~ 601 (615)
++|++++|+++ .+|..|..+++|++|++++|++. .+|..+..+++|+.|++++|++. +.+|.. ..+++++.+...
T Consensus 194 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 99999999998 45566889999999999999998 46777888999999999999998 555543 235667777666
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=2.5e-21 Score=187.36 Aligned_cols=217 Identities=24% Similarity=0.216 Sum_probs=148.3
Q ss_pred CCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCcccc
Q 045619 322 TIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWL 401 (615)
Q Consensus 322 ~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 401 (615)
.+|..+ ++++++|++++|.+.+..+..+.. +++|++|++++|.++...+..|.++++|++|++++|.+++..+..+
T Consensus 21 ~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 21 KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp SCCSSS---CTTCCEEECTTCCCCEECTTTTTT-CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred ccCCCC---CCCccEEECCCCcccccCHhHhcc-ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 455433 236777777777776444434433 3778888888887776666677777888888888888777777777
Q ss_pred CCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCC-CchHHHhchhhhcccccCCCCCcccccccccccc
Q 045619 402 GCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGF-LPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQD 480 (615)
Q Consensus 402 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 480 (615)
..+++|++|++++|.+...... .+..+++|+.|++++|.+.+. +|.. +
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~l~~~-~---------------------------- 145 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEY-F---------------------------- 145 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTC--CCTTCTTCCEEECCSSCCCCCCCCGG-G----------------------------
T ss_pred cCCccccEEECCCCCccccCch--hcccCCCCCEEECcCCccceecCchh-h----------------------------
Confidence 7788888888888777653322 246677888888888777642 2322 1
Q ss_pred ceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCc----EEeCcCCcCcccCCccccCCCCCCEEeCCCC
Q 045619 481 SVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLI----VLNLSHNGLTGSIPVSFANMTALESLDLSSN 556 (615)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 556 (615)
..+++|++|++++|++++..+..+..+++|+ +|++++|++++..+..+. ..+|++|++++|
T Consensus 146 --------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n 210 (276)
T 2z62_A 146 --------------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTN 210 (276)
T ss_dssp --------------GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSS
T ss_pred --------------ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCC
Confidence 2245677788888877766666666666666 788888888754444444 457888888888
Q ss_pred cccccchhhhhhcCcCCeEEcccccceecCCC
Q 045619 557 KLHGRILEQLLSVTALASLNLSYNRLWGRIPR 588 (615)
Q Consensus 557 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~ 588 (615)
+++...+..|+++++|++|++++|++.+..|.
T Consensus 211 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 211 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 88766666677788888888888888765543
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=6.4e-21 Score=183.67 Aligned_cols=207 Identities=23% Similarity=0.268 Sum_probs=170.7
Q ss_pred cCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEE
Q 045619 332 TQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILV 411 (615)
Q Consensus 332 ~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 411 (615)
.+.+.++++++.+. .+|..+. +++++|++++|.++...+..|.++++|++|++++|.++...+..|..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 35788999999888 5665443 6899999999999877777899999999999999999888778888999999999
Q ss_pred ccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchh
Q 045619 412 LRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDV 491 (615)
Q Consensus 412 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (615)
+++|++..... ..+..+++|+.|++++|.+.+..+.. +
T Consensus 92 l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~-~--------------------------------------- 129 (270)
T 2o6q_A 92 VTDNKLQALPI--GVFDQLVNLAELRLDRNQLKSLPPRV-F--------------------------------------- 129 (270)
T ss_dssp CCSSCCCCCCT--TTTTTCSSCCEEECCSSCCCCCCTTT-T---------------------------------------
T ss_pred CCCCcCCcCCH--hHcccccCCCEEECCCCccCeeCHHH-h---------------------------------------
Confidence 99999876332 34577889999999999887544321 1
Q ss_pred hHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCc
Q 045619 492 VLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTA 571 (615)
Q Consensus 492 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 571 (615)
..+++|++|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|+++...+..|..+++
T Consensus 130 ---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 130 ---DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp ---TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ---CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 22567899999999998777777899999999999999998766677888999999999999998877777888999
Q ss_pred CCeEEcccccceecCC
Q 045619 572 LASLNLSYNRLWGRIP 587 (615)
Q Consensus 572 L~~L~l~~n~i~~~~p 587 (615)
|+.|++++|++...-+
T Consensus 207 L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 207 LKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCEEECCSSCBCCSSS
T ss_pred CCEEEecCCCeeCCCc
Confidence 9999999999875543
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=2.8e-21 Score=187.74 Aligned_cols=111 Identities=28% Similarity=0.285 Sum_probs=59.6
Q ss_pred cccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEc
Q 045619 498 TILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNL 577 (615)
Q Consensus 498 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 577 (615)
++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|+++...+..|.++++|++|++
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 44555555555555444455555555555555555555444444555555555555555555444444555555555555
Q ss_pred ccccceecCCCC-CCCCCccCcccCCCcCccCC
Q 045619 578 SYNRLWGRIPRG-NQFNTFENDSYIGNIHLCGE 609 (615)
Q Consensus 578 ~~n~i~~~~p~~-~~~~~~~~~~~~~~~~~~~~ 609 (615)
++|++. .+|.. +...+++.+.+.|||+.|++
T Consensus 180 ~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 555554 33332 22445555555555555554
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=2.2e-21 Score=187.79 Aligned_cols=224 Identities=19% Similarity=0.182 Sum_probs=183.0
Q ss_pred EEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCc
Q 045619 337 LHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNR 416 (615)
Q Consensus 337 L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 416 (615)
.+-.+..+. .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 344444444 4555432 589999999999997777789999999999999999988888899999999999999999
Q ss_pred ccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhh
Q 045619 417 FYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRI 496 (615)
Q Consensus 417 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (615)
+....+ ..+..+++|+.|++++|.+.+..+.. +..
T Consensus 88 l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------------------------------~~~ 122 (276)
T 2z62_A 88 IQSLAL--GAFSGLSSLQKLVAVETNLASLENFP-------------------------------------------IGH 122 (276)
T ss_dssp CCEECT--TTTTTCTTCCEEECTTSCCCCSTTCC-------------------------------------------CTT
T ss_pred cCccCh--hhhcCCccccEEECCCCCccccCchh-------------------------------------------ccc
Confidence 876433 34578899999999999887543311 122
Q ss_pred ccccceEeCCCCccCcc-CCccccCCCCCcEEeCcCCcCcccCCccccCCCCCC----EEeCCCCcccccchhhhhhcCc
Q 045619 497 ITILTTIDLSSNQFQAE-IPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALE----SLDLSSNKLHGRILEQLLSVTA 571 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~l~~ 571 (615)
+++|++|++++|++.+. .|..++.+++|++|++++|++++..+..|..+++|+ +|++++|++....+..+.. .+
T Consensus 123 l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~ 201 (276)
T 2z62_A 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IR 201 (276)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CC
T ss_pred CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-Cc
Confidence 57799999999999864 588999999999999999999977777888888888 9999999999776665554 48
Q ss_pred CCeEEcccccceecCCCC-CCCCCccCcccCCCcCccCCC
Q 045619 572 LASLNLSYNRLWGRIPRG-NQFNTFENDSYIGNIHLCGEP 610 (615)
Q Consensus 572 L~~L~l~~n~i~~~~p~~-~~~~~~~~~~~~~~~~~~~~~ 610 (615)
|++|++++|.+.+..+.. ..+++++.+.+.+|+..|+++
T Consensus 202 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 999999999998554443 348999999999999999987
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=7.8e-20 Score=177.49 Aligned_cols=204 Identities=23% Similarity=0.258 Sum_probs=164.7
Q ss_pred ccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCC
Q 045619 303 ICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDE 382 (615)
Q Consensus 303 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~ 382 (615)
+..++++++++++++.+. .+|..+. ++++.|++++|.+.+..+..+.. +++|++|++++|.++...+ ...+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRAELTKLQV--DGTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTT-CTTCCEEECTTSCCCEEEC--CSCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhc-CCCCCEEECCCCccCcccC--CCCCCc
Confidence 567889999999999998 7776654 48999999999998655555554 4899999999999885433 377899
Q ss_pred ccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccc
Q 045619 383 LEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVD 462 (615)
Q Consensus 383 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~ 462 (615)
|++|++++|.++ ..|..+..+++|++|++++|++.... ...+..+++|+.|++++|.+.+..+. .+
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~~l~~L~~L~L~~N~l~~~~~~-~~---------- 144 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNELKTLPPG-LL---------- 144 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCC--SSTTTTCTTCCEEECTTSCCCCCCTT-TT----------
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccC--HHHHcCCCCCCEEECCCCCCCccChh-hc----------
Confidence 999999999996 56677889999999999999987633 23457788999999999988744332 11
Q ss_pred cCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccc
Q 045619 463 EKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSF 542 (615)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 542 (615)
..+++|+.|++++|+++...+..|..+++|++|+|++|+++ .+|..+
T Consensus 145 --------------------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 145 --------------------------------TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191 (290)
T ss_dssp --------------------------------TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred --------------------------------ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence 12567899999999999777777889999999999999998 778888
Q ss_pred cCCCCCCEEeCCCCcccc
Q 045619 543 ANMTALESLDLSSNKLHG 560 (615)
Q Consensus 543 ~~l~~L~~L~l~~n~~~~ 560 (615)
...++|+.|++++|.+.+
T Consensus 192 ~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 192 FGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTCCCSEEECCSCCBCC
T ss_pred cccccCCeEEeCCCCccC
Confidence 888899999999998865
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=185.57 Aligned_cols=207 Identities=23% Similarity=0.211 Sum_probs=132.8
Q ss_pred CCcEEEccCCcccccCchhhh-cCCCcccEEEcCCCcccCCCC----cccCCCCCccEEEcCCCcCCccCccccCCCCCC
Q 045619 333 QLTILHLNNNKLQGRIPDAFA-NGSCSLRSLDLNSNKLEGPFP----RYLADCDELEVVNVGNNMIGDTFPSWLGCLPGL 407 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 407 (615)
+|++|++++|.+.+..+..+. ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 355555555555544444432 223555555555555553322 223345666666666666666666666666666
Q ss_pred cEEEccCCcccCc--cCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEE
Q 045619 408 NILVLRSNRFYGP--LCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVT 485 (615)
Q Consensus 408 ~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 485 (615)
++|++++|++.+. .+.......+++|+.|++++|.++. ++..
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~----------------------------------- 215 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGV----------------------------------- 215 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHH-----------------------------------
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHH-----------------------------------
Confidence 6666666665331 1112222456677777777777652 1111
Q ss_pred ecCchhhHHhhccccceEeCCCCccCccCCccccCC---CCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccc
Q 045619 486 VKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDF---KSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRI 562 (615)
Q Consensus 486 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 562 (615)
....+..+++|++|++++|++.+..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|++++|++++.
T Consensus 216 ----~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~- 287 (310)
T 4glp_A 216 ----CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA- 287 (310)
T ss_dssp ----HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-
T ss_pred ----HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-
Confidence 01112345779999999999998777777666 69999999999999 6777764 7999999999999864
Q ss_pred hhhhhhcCcCCeEEccccccee
Q 045619 563 LEQLLSVTALASLNLSYNRLWG 584 (615)
Q Consensus 563 ~~~~~~l~~L~~L~l~~n~i~~ 584 (615)
|. +..+++|+.|++++|+|.+
T Consensus 288 ~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 288 PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC-TTSCCCCSCEECSSTTTSC
T ss_pred ch-hhhCCCccEEECcCCCCCC
Confidence 33 6788999999999999864
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=1.4e-19 Score=174.41 Aligned_cols=201 Identities=22% Similarity=0.246 Sum_probs=144.8
Q ss_pred CCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEc
Q 045619 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVL 412 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 412 (615)
+|+.|+++++.+.. .+ .+.. +++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 42 ~L~~L~l~~~~i~~-~~-~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 42 SIDQIIANNSDIKS-VQ-GIQY-LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TCCEEECTTSCCCC-CT-TGGG-CTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ceeeeeeCCCCccc-cc-cccc-CCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 66777777766652 22 2222 36777777777776642 35666777777777777777666666777777777777
Q ss_pred cCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhh
Q 045619 413 RSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVV 492 (615)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (615)
++|.+....+ ..+..+++|+.|++++|.+.+..+.. +
T Consensus 117 ~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~-~---------------------------------------- 153 (272)
T 3rfs_A 117 VENQLQSLPD--GVFDKLTNLTYLNLAHNQLQSLPKGV-F---------------------------------------- 153 (272)
T ss_dssp TTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTT-T----------------------------------------
T ss_pred CCCcCCccCH--HHhccCCCCCEEECCCCccCccCHHH-h----------------------------------------
Confidence 7777664222 22456677777777777776433321 1
Q ss_pred HHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcC
Q 045619 493 LKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTAL 572 (615)
Q Consensus 493 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 572 (615)
..+++|+.|++++|++++..+..++.+++|++|++++|++++..+..|..+++|+.|++++|.+.+. +++|
T Consensus 154 --~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l 224 (272)
T 3rfs_A 154 --DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGI 224 (272)
T ss_dssp --TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTT
T ss_pred --ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHH
Confidence 1246688899999998877777789999999999999999977777789999999999999988753 5678
Q ss_pred CeEEcccccceecCCCCC
Q 045619 573 ASLNLSYNRLWGRIPRGN 590 (615)
Q Consensus 573 ~~L~l~~n~i~~~~p~~~ 590 (615)
+.++++.|.+.+.+|...
T Consensus 225 ~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 225 RYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp HHHHHHHHHTGGGBBCTT
T ss_pred HHHHHHHHhCCCcccCcc
Confidence 899999999999998853
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=1.7e-21 Score=196.30 Aligned_cols=259 Identities=18% Similarity=0.200 Sum_probs=122.7
Q ss_pred EEcCCCccccccCCC---CCCceEEEccCCcccccCc----ccccCCC-ccceeeccccccCCCCCCChhcc----ccCC
Q 045619 267 LNLRNNTIQGTILVP---PPSTRAFLFSNNKLFGQIP----PSICSLS-SLEYLSLSHNNLNGTIPPCLGNF----STQL 334 (615)
Q Consensus 267 L~l~~~~i~~~~~~~---~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~----~~~L 334 (615)
++++.+.+.+..+.. +++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+... .++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 345555555433221 3446666666666555444 4455555 56666666666554333333332 1356
Q ss_pred cEEEccCCcccccCchhhhc---CC-CcccEEEcCCCcccCCCCcc----cCC-CCCccEEEcCCCcCCccCccc----c
Q 045619 335 TILHLNNNKLQGRIPDAFAN---GS-CSLRSLDLNSNKLEGPFPRY----LAD-CDELEVVNVGNNMIGDTFPSW----L 401 (615)
Q Consensus 335 ~~L~L~~~~i~~~~~~~~~~---~~-~~L~~L~l~~~~i~~~~~~~----~~~-l~~L~~L~l~~n~i~~~~~~~----~ 401 (615)
++|++++|.+.+..+..+.. .. ++|++|++++|.+++..+.. +.. ..+|++|++++|.+++..+.. +
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 66666666655443332221 11 45666666666555433322 222 245666666666555433222 2
Q ss_pred CCCC-CCcEEEccCCcccCccCCCc--cCCCC-CcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccc
Q 045619 402 GCLP-GLNILVLRSNRFYGPLCESN--IMFPF-QALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDY 477 (615)
Q Consensus 402 ~~l~-~L~~L~l~~~~~~~~~~~~~--~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ 477 (615)
..++ +|++|++++|.+....+... .+... ++|+.|++++|.+.+.....+...+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l---------------------- 220 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF---------------------- 220 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH----------------------
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH----------------------
Confidence 3333 55555555555543221110 11222 3555555555555432221111111
Q ss_pred cccceeEEecCchhhHHhhccccceEeCCCCccCccCC----ccccCCCCCcEEeCcCCcCccc-------CCccccCCC
Q 045619 478 YQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIP----RVLGDFKSLIVLNLSHNGLTGS-------IPVSFANMT 546 (615)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~----~~l~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~ 546 (615)
....++|++|++++|++++..+ ..+..+++|++|++++|++... ++..+..++
T Consensus 221 ----------------~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~ 284 (362)
T 3goz_A 221 ----------------SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284 (362)
T ss_dssp ----------------HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred ----------------hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence 1112456666666666654332 2335556666666666663211 223455556
Q ss_pred CCCEEeCCCCcccccch
Q 045619 547 ALESLDLSSNKLHGRIL 563 (615)
Q Consensus 547 ~L~~L~l~~n~~~~~~~ 563 (615)
+|+.|++++|.+....+
T Consensus 285 ~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 285 KIILVDKNGKEIHPSHS 301 (362)
T ss_dssp EEEEECTTSCBCCGGGC
T ss_pred ceEEEecCCCcCCCcch
Confidence 66666666666655433
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=8.4e-21 Score=189.52 Aligned_cols=254 Identities=15% Similarity=0.145 Sum_probs=163.6
Q ss_pred ceEEEccCCcccccCcccccCC--CccceeeccccccCCCCCCChhccccCCcEEEccCCccccc-CchhhhcCCCcccE
Q 045619 285 TRAFLFSNNKLFGQIPPSICSL--SSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGR-IPDAFANGSCSLRS 361 (615)
Q Consensus 285 L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~-~~~~~~~~~~~L~~ 361 (615)
++.++++++.+. +..+..+ +.++.|++++|.+.+..+. ++.+ ++|++|++++|.+.+. .+.. ...+++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~-~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSP-FRVQHMDLSNSVIEVSTLHGI-LSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCC-BCCCEEECTTCEECHHHHHHH-HTTBCCCSE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccC-CCCCEEEccCCCcCHHHHHHH-HhhCCCCCE
Confidence 444455444433 2334444 6677777777776644333 3333 3677777777776543 3333 334467777
Q ss_pred EEcCCCcccCCCCcccCCCCCccEEEcCCC-cCCcc-CccccCCCCCCcEEEccCC-cccCccCCCccCCCCC-cccEEE
Q 045619 362 LDLNSNKLEGPFPRYLADCDELEVVNVGNN-MIGDT-FPSWLGCLPGLNILVLRSN-RFYGPLCESNIMFPFQ-ALRIID 437 (615)
Q Consensus 362 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~-~L~~L~ 437 (615)
|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+..... ...+..++ +|+.|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV-QVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH-HHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH-HHHHHhcccCCCEEE
Confidence 777777766555666667777777777777 55542 4445666777777777777 5543211 11224456 777777
Q ss_pred ccCCc--CcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCc-cCccC
Q 045619 438 LSHNE--FTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQ-FQAEI 514 (615)
Q Consensus 438 l~~~~--l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~ 514 (615)
+++|. +++. .+ ......+++|++|++++|. +++..
T Consensus 202 l~~~~~~~~~~---~l---------------------------------------~~~~~~~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 202 LSGYRKNLQKS---DL---------------------------------------STLVRRCPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp CCSCGGGSCHH---HH---------------------------------------HHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred eCCCcccCCHH---HH---------------------------------------HHHHhhCCCCCEEeCCCCCcCCHHH
Confidence 77763 2210 00 0112346889999999999 77777
Q ss_pred CccccCCCCCcEEeCcCCc-CcccCCccccCCCCCCEEeCCCCcccccchhhhhhc-CcCCeEEcccccceecCCCCCC
Q 045619 515 PRVLGDFKSLIVLNLSHNG-LTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSV-TALASLNLSYNRLWGRIPRGNQ 591 (615)
Q Consensus 515 ~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~p~~~~ 591 (615)
+..+..+++|++|++++|. ++......+..+++|++|++++| +.. ..+..+ .+++.|++++|++.+..|+...
T Consensus 240 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 240 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 7889999999999999995 44333346888999999999999 443 344444 3488888999999999887544
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=7e-22 Score=201.14 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=54.7
Q ss_pred ccccceEeCCCCccC----ccCCccccCCCCCcEEeCcCCcCccc----CCccccC--CCCCCEEeCCCCcccc----cc
Q 045619 497 ITILTTIDLSSNQFQ----AEIPRVLGDFKSLIVLNLSHNGLTGS----IPVSFAN--MTALESLDLSSNKLHG----RI 562 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~----~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~l~~n~~~~----~~ 562 (615)
+++|+.|++++|.++ ..++..+..+++|++|+|++|++++. ++..+.. +++|++|+|++|.++. .+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 455666666666664 34455666666677777777766643 3444432 6667777777776665 35
Q ss_pred hhhh-hhcCcCCeEEcccccceecC
Q 045619 563 LEQL-LSVTALASLNLSYNRLWGRI 586 (615)
Q Consensus 563 ~~~~-~~l~~L~~L~l~~n~i~~~~ 586 (615)
|..+ .++++|++|++++|++.+..
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhcCCCceEEEccCCcCCcch
Confidence 5554 44666777777777665443
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=1.5e-19 Score=174.19 Aligned_cols=204 Identities=21% Similarity=0.224 Sum_probs=165.6
Q ss_pred CCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEc
Q 045619 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVL 412 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 412 (615)
.+..+++..+.+.+..... .+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~~~~~---~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSEECHH---HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHhcCcccccccccc---cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 3445555565554332222 227899999999998743 3578899999999999999764 47889999999999
Q ss_pred cCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhh
Q 045619 413 RSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVV 492 (615)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (615)
++|.+....+ ..+..+++|+.|++++|.+.+..+.. +
T Consensus 93 ~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~-~---------------------------------------- 129 (272)
T 3rfs_A 93 TGNQLQSLPN--GVFDKLTNLKELVLVENQLQSLPDGV-F---------------------------------------- 129 (272)
T ss_dssp TTSCCCCCCT--TTTTTCTTCCEEECTTSCCCCCCTTT-T----------------------------------------
T ss_pred CCCccCccCh--hHhcCCcCCCEEECCCCcCCccCHHH-h----------------------------------------
Confidence 9999886333 33577899999999999988544421 1
Q ss_pred HHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcC
Q 045619 493 LKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTAL 572 (615)
Q Consensus 493 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 572 (615)
..+++|++|++++|++++..+..++.+++|++|++++|++++..+..|..+++|+.|++++|++.+..+..+..+++|
T Consensus 130 --~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 130 --DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp --TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred --ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence 225779999999999998777888999999999999999997777778999999999999999999888889999999
Q ss_pred CeEEcccccceecCCC
Q 045619 573 ASLNLSYNRLWGRIPR 588 (615)
Q Consensus 573 ~~L~l~~n~i~~~~p~ 588 (615)
++|++++|++.+..|.
T Consensus 208 ~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 208 QYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CEEECCSSCBCCCTTT
T ss_pred CEEEccCCCccccCcH
Confidence 9999999999877764
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=1.6e-19 Score=170.55 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=51.4
Q ss_pred CCcEEEccCCcccccCchhhhcCCCcccEEEcCCCc-ccCCCCcccCCCCCccEEEcCC-CcCCccCccccCCCCCCcEE
Q 045619 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNK-LEGPFPRYLADCDELEVVNVGN-NMIGDTFPSWLGCLPGLNIL 410 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L 410 (615)
++++|++++|.+.+..+..+. .+++|++|++++|. ++...+..|.++++|++|++++ |.++...+.+|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~-~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFS-NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTT-TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHcc-CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 566666666666633332333 23666666666665 5544445566666666666666 66665555566666666666
Q ss_pred EccCCcccC
Q 045619 411 VLRSNRFYG 419 (615)
Q Consensus 411 ~l~~~~~~~ 419 (615)
++++|++..
T Consensus 111 ~l~~n~l~~ 119 (239)
T 2xwt_C 111 GIFNTGLKM 119 (239)
T ss_dssp EEEEECCCS
T ss_pred eCCCCCCcc
Confidence 666665544
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=8.7e-19 Score=166.70 Aligned_cols=180 Identities=19% Similarity=0.230 Sum_probs=141.7
Q ss_pred CCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEc
Q 045619 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVL 412 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 412 (615)
..+.++++++.+. .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 5778899888887 5665543 58899999999998887788889999999999999998888888899999999999
Q ss_pred cCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhh
Q 045619 413 RSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVV 492 (615)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (615)
++|.+....+ ..+..+++|+.|++++|.+.+..+.. +
T Consensus 91 ~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~-~---------------------------------------- 127 (251)
T 3m19_A 91 ANNQLASLPL--GVFDHLTQLDKLYLGGNQLKSLPSGV-F---------------------------------------- 127 (251)
T ss_dssp TTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTT-T----------------------------------------
T ss_pred CCCcccccCh--hHhcccCCCCEEEcCCCcCCCcChhH-h----------------------------------------
Confidence 9998875332 33467788888888888887433321 1
Q ss_pred HHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 045619 493 LKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGR 561 (615)
Q Consensus 493 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 561 (615)
..+++|++|++++|++++..+..|+.+++|++|+|++|++++..+..|..+++|+.|++++|++.+.
T Consensus 128 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 128 --DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp --TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred --ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 1246688888888888876666788888888888888888866666788888888888888888754
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=6.9e-20 Score=173.08 Aligned_cols=199 Identities=13% Similarity=0.147 Sum_probs=163.9
Q ss_pred CcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCc-CCccCccccCCCCCCcEEEccC-CcccCccCCCccCCCCCccc
Q 045619 357 CSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNM-IGDTFPSWLGCLPGLNILVLRS-NRFYGPLCESNIMFPFQALR 434 (615)
Q Consensus 357 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~ 434 (615)
+++++|++++|.+++..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |.+.... ...+..+++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~--~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID--PDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC--TTSEECCTTCC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC--HHHhCCCCCCC
Confidence 589999999999997777789999999999999997 8888888999999999999998 8887533 33457789999
Q ss_pred EEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccc---eEeCCCC-cc
Q 045619 435 IIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILT---TIDLSSN-QF 510 (615)
Q Consensus 435 ~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~i 510 (615)
.|++++|.+.+ +|. +.. +++|+ .|++++| ++
T Consensus 109 ~L~l~~n~l~~-lp~--~~~------------------------------------------l~~L~~L~~L~l~~N~~l 143 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD--LTK------------------------------------------VYSTDIFFILEITDNPYM 143 (239)
T ss_dssp EEEEEEECCCS-CCC--CTT------------------------------------------CCBCCSEEEEEEESCTTC
T ss_pred EEeCCCCCCcc-ccc--ccc------------------------------------------ccccccccEEECCCCcch
Confidence 99999999885 342 222 34455 9999999 99
Q ss_pred CccCCccccCCCCCc-EEeCcCCcCcccCCccccCCCCCCEEeCCCCc-ccccchhhhhhc-CcCCeEEcccccceecCC
Q 045619 511 QAEIPRVLGDFKSLI-VLNLSHNGLTGSIPVSFANMTALESLDLSSNK-LHGRILEQLLSV-TALASLNLSYNRLWGRIP 587 (615)
Q Consensus 511 ~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~p 587 (615)
.+..+..|..+++|+ +|++++|+++...+..|.. ++|++|++++|+ ++...+..|..+ ++|++|++++|++. .+|
T Consensus 144 ~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~ 221 (239)
T 2xwt_C 144 TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALP 221 (239)
T ss_dssp CEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCC
T ss_pred hhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCC
Confidence 877778899999999 9999999999444445555 899999999995 987778889999 99999999999997 566
Q ss_pred CCCCCCCccCcccCCCcC
Q 045619 588 RGNQFNTFENDSYIGNIH 605 (615)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~ 605 (615)
+. .++.++.|.+.++..
T Consensus 222 ~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 222 SK-GLEHLKELIARNTWT 238 (239)
T ss_dssp CT-TCTTCSEEECTTC--
T ss_pred hh-HhccCceeeccCccC
Confidence 65 567888887776653
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=1.9e-18 Score=164.34 Aligned_cols=180 Identities=19% Similarity=0.236 Sum_probs=91.8
Q ss_pred cccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEE
Q 045619 358 SLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIID 437 (615)
Q Consensus 358 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 437 (615)
+.++++++++.++ .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+....+ ..+..+++|+.|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA--GVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEE
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH--hHhccCCcCCEEE
Confidence 3455555555554 2333222 355555555555555555555555555555555555544221 2234455555555
Q ss_pred ccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCcc
Q 045619 438 LSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRV 517 (615)
Q Consensus 438 l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 517 (615)
+++|.+.+..+.. + ..+++|++|++++|++++..+..
T Consensus 90 L~~n~l~~~~~~~-~------------------------------------------~~l~~L~~L~L~~N~l~~~~~~~ 126 (251)
T 3m19_A 90 LANNQLASLPLGV-F------------------------------------------DHLTQLDKLYLGGNQLKSLPSGV 126 (251)
T ss_dssp CTTSCCCCCCTTT-T------------------------------------------TTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCcccccChhH-h------------------------------------------cccCCCCEEEcCCCcCCCcChhH
Confidence 5555554222211 1 11344555555555555444444
Q ss_pred ccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceec
Q 045619 518 LGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGR 585 (615)
Q Consensus 518 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 585 (615)
|..+++|++|+|++|++++..+..|..+++|++|+|++|++....+..|..+++|++|++++|++.+.
T Consensus 127 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 55555555555555555543444455555555555555555555555555555555555555555443
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=1.4e-18 Score=170.49 Aligned_cols=190 Identities=19% Similarity=0.275 Sum_probs=124.6
Q ss_pred CCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEc
Q 045619 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVL 412 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 412 (615)
+|++|+++++.+.. ++ .+.. +++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~-l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQY-LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CcCEEEeeCCCccC-ch-hhhc-cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 56666666666652 22 2322 3667777777776664332 66667777777777776543 24666777777777
Q ss_pred cCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhh
Q 045619 413 RSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVV 492 (615)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (615)
++|.+.... .+..+++|+.|++++|.+.+..+ +
T Consensus 115 ~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~---l---------------------------------------- 147 (308)
T 1h6u_A 115 TSTQITDVT----PLAGLSNLQVLYLDLNQITNISP---L---------------------------------------- 147 (308)
T ss_dssp TTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG---G----------------------------------------
T ss_pred CCCCCCCch----hhcCCCCCCEEECCCCccCcCcc---c----------------------------------------
Confidence 777665522 14566777777777776653322 1
Q ss_pred HHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcC
Q 045619 493 LKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTAL 572 (615)
Q Consensus 493 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 572 (615)
..+++|+.|++++|++.+..+ +..+++|++|++++|++++..+ +..+++|++|++++|++.+..+ +..+++|
T Consensus 148 --~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L 219 (308)
T 1h6u_A 148 --AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNL 219 (308)
T ss_dssp --GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTC
T ss_pred --cCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCC
Confidence 124667778888887775333 7778888888888888874332 7778888888888888875543 6778888
Q ss_pred CeEEccccccee
Q 045619 573 ASLNLSYNRLWG 584 (615)
Q Consensus 573 ~~L~l~~n~i~~ 584 (615)
+.|++++|++.+
T Consensus 220 ~~L~l~~N~i~~ 231 (308)
T 1h6u_A 220 FIVTLTNQTITN 231 (308)
T ss_dssp CEEEEEEEEEEC
T ss_pred CEEEccCCeeec
Confidence 888888888754
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=5.6e-21 Score=194.46 Aligned_cols=177 Identities=15% Similarity=0.112 Sum_probs=108.5
Q ss_pred cCCCCChhhhcCCCCceeeCCCCccCCCCch----hhhcCCCCcEEecCCCcCccccCcchhhc-------cCCCCCCEE
Q 045619 60 NGSQISPEFLRLKELTYLNLSYTRFSGLLPQ----EISHMSKLTHLDLFDCDMTIEQKSFDLLA-------SNLTKLSVL 128 (615)
Q Consensus 60 ~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~----~l~~l~~L~~L~L~~~~~~~~~~~~~~~l-------~~l~~L~~L 128 (615)
....++..+..+++|++|++++|.+.+..+. .+.++++|++|++++|.+......+|..+ ..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 3334778888899999999999988765443 36688999999999976543323444444 678888888
Q ss_pred ecccccCCCCC----chhhhcccccccEEEcCCCCCccCCCccccC----C---------CCCcEEEcccCCCccccCCC
Q 045619 129 NLGWADRSLIE----PFSVLNLSSTITVLDLSGTGMRGNFPREIFQ----L---------PHLQELHLSSNKYLTGYLPE 191 (615)
Q Consensus 129 ~l~~~~~~~~~----~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~----l---------~~L~~L~l~~~~~~~~~~~~ 191 (615)
++++|.+.... +..+..+ ++|++|++++|.+....+..+.. + ++|++|++++|++....++.
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 88888877642 3344555 78888888888876433333332 2 67777777777544222221
Q ss_pred CCCCCCccEEECCCCCccccccCCCCcCEEecCCcccCcc----cccccccCCCcCcEEEccCCcc
Q 045619 192 SNWSTSLRELDLSFSNFTGFLRNSEELEFLDLSNNRIHGR----ISKSDSQGWKSLTYLDISNNFL 253 (615)
Q Consensus 192 ~~~~~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~ 253 (615)
+ ...+..+++|++|++++|.+... +....+..+++|+.|++++|.+
T Consensus 179 l----------------~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 179 W----------------AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp H----------------HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred H----------------HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 0 01233445555555555555411 1111234556666666666654
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=2.9e-20 Score=187.24 Aligned_cols=260 Identities=18% Similarity=0.176 Sum_probs=190.3
Q ss_pred EEEccCCcccccCcccccCCCccceeeccccccCCCCC----CChhccccCCcEEEccCCcccccCchhhhcC----CCc
Q 045619 287 AFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIP----PCLGNFSTQLTILHLNNNKLQGRIPDAFANG----SCS 358 (615)
Q Consensus 287 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~----~~~ 358 (615)
.+.++.+.+.+..|..+...++|++|++++|.+.+..+ ..+...+.+|++|++++|.+.+..+..+... .++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35778888888787777777789999999999884444 3444443379999999999987666555442 378
Q ss_pred ccEEEcCCCcccCCCCcc----cCCC-CCccEEEcCCCcCCccCcccc----CC-CCCCcEEEccCCcccCccCCC--cc
Q 045619 359 LRSLDLNSNKLEGPFPRY----LADC-DELEVVNVGNNMIGDTFPSWL----GC-LPGLNILVLRSNRFYGPLCES--NI 426 (615)
Q Consensus 359 L~~L~l~~~~i~~~~~~~----~~~l-~~L~~L~l~~n~i~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~~~~--~~ 426 (615)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+....... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998665553 4444 899999999999987766554 33 469999999999887532221 11
Q ss_pred CCCCC-cccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhc-cccceEe
Q 045619 427 MFPFQ-ALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRII-TILTTID 504 (615)
Q Consensus 427 ~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~ 504 (615)
+...+ +|+.|++++|.+++..+..+...+ ... ++|++|+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l---------------------------------------~~~~~~L~~L~ 202 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFL---------------------------------------ASIPASVTSLD 202 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHH---------------------------------------HTSCTTCCEEE
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHH---------------------------------------HhCCCCCCEEE
Confidence 22333 899999999998866554432222 123 4799999
Q ss_pred CCCCccCcc----CCccccC-CCCCcEEeCcCCcCcccCC----ccccCCCCCCEEeCCCCcccccchh-------hhhh
Q 045619 505 LSSNQFQAE----IPRVLGD-FKSLIVLNLSHNGLTGSIP----VSFANMTALESLDLSSNKLHGRILE-------QLLS 568 (615)
Q Consensus 505 l~~~~i~~~----~~~~l~~-l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~-------~~~~ 568 (615)
+++|++.+. ++..+.. .++|++|+|++|++++..+ ..+..+++|+.|++++|.+....+. .+..
T Consensus 203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~ 282 (362)
T 3goz_A 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence 999999863 3445555 4699999999999986443 4457789999999999995543333 4566
Q ss_pred cCcCCeEEcccccceec
Q 045619 569 VTALASLNLSYNRLWGR 585 (615)
Q Consensus 569 l~~L~~L~l~~n~i~~~ 585 (615)
+++|++|++++|++.+.
T Consensus 283 l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 283 IQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCEEEEECTTSCBCCGG
T ss_pred CCceEEEecCCCcCCCc
Confidence 78899999999999876
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=1.6e-19 Score=177.74 Aligned_cols=228 Identities=22% Similarity=0.232 Sum_probs=172.1
Q ss_pred CCcEEEccCCcccccCchhhhc--CCCcccEEEcCCCcccCCCCccc--CCCCCccEEEcCCCcCCccCc----cccCCC
Q 045619 333 QLTILHLNNNKLQGRIPDAFAN--GSCSLRSLDLNSNKLEGPFPRYL--ADCDELEVVNVGNNMIGDTFP----SWLGCL 404 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~~~~l 404 (615)
.++.+.+.++.+.......+.. ..++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 5778888887765321111111 12579999999999998888887 889999999999999987544 345579
Q ss_pred CCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeE
Q 045619 405 PGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTV 484 (615)
Q Consensus 405 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 484 (615)
++|++|++++|.+....+ ..+..+++|+.|++++|.+.+...... .
T Consensus 145 ~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~------------------------------- 190 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSC--EQVRAFPALTSLDLSDNPGLGERGLMA-A------------------------------- 190 (310)
T ss_dssp SCCCEEEEECCSSCCCCT--TSCCCCTTCCEEECCSCTTCHHHHHHT-T-------------------------------
T ss_pred cCCCEEEeeCCCcchhhH--HHhccCCCCCEEECCCCCCccchhhhH-H-------------------------------
Confidence 999999999999966433 345788999999999998753211000 0
Q ss_pred EecCchhhHHhhccccceEeCCCCccCccCC--c-cccCCCCCcEEeCcCCcCcccCCccccCC---CCCCEEeCCCCcc
Q 045619 485 TVKGRDVVLKRIITILTTIDLSSNQFQAEIP--R-VLGDFKSLIVLNLSHNGLTGSIPVSFANM---TALESLDLSSNKL 558 (615)
Q Consensus 485 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~~ 558 (615)
.....+++|++|++++|+++...+ . .++.+++|++|+|++|++++..|..+..+ ++|++|++++|++
T Consensus 191 -------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 191 -------LCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp -------SCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC
T ss_pred -------HhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC
Confidence 000125779999999999973221 1 35788999999999999997778777776 7999999999999
Q ss_pred cccchhhhhhcCcCCeEEcccccceecCCCCCCCCCccCcccCCCcC
Q 045619 559 HGRILEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFENDSYIGNIH 605 (615)
Q Consensus 559 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~ 605 (615)
+ .+|..+. ++|++|++++|++.+ +|....+++++.|.+.||+.
T Consensus 264 ~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 264 E-QVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp C-SCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTTT
T ss_pred C-chhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCCCC
Confidence 9 5566553 899999999999985 36556678999999988875
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=2.9e-19 Score=178.29 Aligned_cols=225 Identities=19% Similarity=0.247 Sum_probs=144.4
Q ss_pred ccceeeccccccCCCCCCChhcc-ccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCC-CCcccCCCCCccE
Q 045619 308 SLEYLSLSHNNLNGTIPPCLGNF-STQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGP-FPRYLADCDELEV 385 (615)
Q Consensus 308 ~L~~L~l~~~~l~~~~~~~~~~~-~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~ 385 (615)
.++.++++++.+. +..+... .++++.++++++.+.+..+. +.. +++|++|++++|.+++. .+..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~-~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCC-CBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hcc-CCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3556666666543 2222222 13566666666666544333 222 35666666666665533 4455566666666
Q ss_pred EEcCCCcCCccCccccCCCCCCcEEEccCC-cccCccCCCccCCCCCcccEEEccCC-cCcCCCchHHHhchhhhccccc
Q 045619 386 VNVGNNMIGDTFPSWLGCLPGLNILVLRSN-RFYGPLCESNIMFPFQALRIIDLSHN-EFTGFLPRWIFVSLEAMKNVDE 463 (615)
Q Consensus 386 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~L~~l~~ 463 (615)
|++++|.+++..+..+..+++|++|++++| .+.... ....+..+++|+.|++++| .+++...
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~--------------- 186 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA-LQTLLSSCSRLDELNLSWCFDFTEKHV--------------- 186 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH-HHHHHHHCTTCCEEECCCCTTCCHHHH---------------
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH-HHHHHhcCCCCCEEcCCCCCCcChHHH---------------
Confidence 666666666566666666666666666666 333210 1111234566666666666 5442110
Q ss_pred CCCCCccccccccccccceeEEecCchhhHHhhcc-ccceEeCCCC--ccC-ccCCccccCCCCCcEEeCcCCc-CcccC
Q 045619 464 KGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIIT-ILTTIDLSSN--QFQ-AEIPRVLGDFKSLIVLNLSHNG-LTGSI 538 (615)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~--~i~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~ 538 (615)
......++ +|++|++++| .++ +..+..+..+++|++|++++|. +++..
T Consensus 187 ---------------------------~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 187 ---------------------------QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp ---------------------------HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred ---------------------------HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH
Confidence 11123467 8999999999 555 4566778899999999999999 77777
Q ss_pred CccccCCCCCCEEeCCCCc-ccccchhhhhhcCcCCeEEcccc
Q 045619 539 PVSFANMTALESLDLSSNK-LHGRILEQLLSVTALASLNLSYN 580 (615)
Q Consensus 539 ~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n 580 (615)
+..+..+++|++|++++|. +.......+.++++|++|++++|
T Consensus 240 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 240 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 8889999999999999995 44343446888999999999999
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=1.3e-17 Score=163.56 Aligned_cols=191 Identities=24% Similarity=0.295 Sum_probs=92.4
Q ss_pred hcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccc
Q 045619 69 LRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSS 148 (615)
Q Consensus 69 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 148 (615)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+... ..+..+ +
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~----~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l-~ 107 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT----DLAP-LKNLTKITELELSGNPLKNV--SAIAGL-Q 107 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC----CCGG-GTTCCSCCEEECCSCCCSCC--GGGTTC-T
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC----CChh-HccCCCCCEEEccCCcCCCc--hhhcCC-C
Confidence 344455555555554442 22 3444555555555555443 2222 44455555555555544332 123333 4
Q ss_pred cccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCcccc--ccCCCCcCEEecCCc
Q 045619 149 TITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGF--LRNSEELEFLDLSNN 226 (615)
Q Consensus 149 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~L~~L~l~~~ 226 (615)
+|++|++++|.+.+. ..+..+++|++|++++|.+.. .+.+..+++|++|++++|.+.+. +..+++|+.|++++|
T Consensus 108 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 108 SIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183 (308)
T ss_dssp TCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc--CccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCC
Confidence 555555555554422 124455555555555553332 11233445555555555544432 445555666666666
Q ss_pred ccCcccccccccCCCcCcEEEccCCcccCcCC-CCCCCCcEEEcCCCcccc
Q 045619 227 RIHGRISKSDSQGWKSLTYLDISNNFLTQIEQ-HPWKNITVLNLRNNTIQG 276 (615)
Q Consensus 227 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~i~~ 276 (615)
.+.+ ++. +..+++|++|++++|+++.+.+ ..+++|+.|++++|.+.+
T Consensus 184 ~l~~-~~~--l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 184 KISD-ISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCC-CGG--GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred ccCc-Chh--hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 5542 222 3555666666666666655544 445566666666665543
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=2.5e-18 Score=172.03 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=48.9
Q ss_pred eeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCC-CcccCCCCCccE-EEc
Q 045619 311 YLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPF-PRYLADCDELEV-VNV 388 (615)
Q Consensus 311 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~l~~L~~-L~l 388 (615)
+++-+++.++ .+|..+ ++++++|++++|.|. .++...+..+++|++|++++|.+.+.+ +.+|.+++++.+ +.+
T Consensus 13 ~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEEEESTTCC-SCCTTC---CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EEEecCCCCC-ccCcCc---CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 3444444444 444433 234555555555554 233222222355555555555543322 234455554433 334
Q ss_pred CCCcCCccCccccCCCCCCcEEEccCCcccC
Q 045619 389 GNNMIGDTFPSWLGCLPGLNILVLRSNRFYG 419 (615)
Q Consensus 389 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 419 (615)
.+|+++...+++|..+++|++|++++|++..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred cCCcccccCchhhhhcccccccccccccccc
Confidence 4455555555555555555555555555543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=3.2e-17 Score=164.04 Aligned_cols=244 Identities=16% Similarity=0.083 Sum_probs=132.8
Q ss_pred cEEEcCCCccccccCCCCCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcE-EEccCCc
Q 045619 265 TVLNLRNNTIQGTILVPPPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTI-LHLNNNK 343 (615)
Q Consensus 265 ~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-L~L~~~~ 343 (615)
+.++.++++++.....-++++++|++++|.+....+.+|.++++|++|++++|.+.+.++...+...+++.+ +.+..|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 455666666654332234567777777777765555566777777777777776654455433332224443 4445566
Q ss_pred ccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCC-CcCCccCccccCCCC-CCcEEEccCCcccCcc
Q 045619 344 LQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGN-NMIGDTFPSWLGCLP-GLNILVLRSNRFYGPL 421 (615)
Q Consensus 344 i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~ 421 (615)
+....+..+. .+++|++|++++|.+....+..+.....+..+++.+ +.+....+..|..+. .++.|++++|.+....
T Consensus 92 l~~l~~~~f~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQ-NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp CCEECTTSBC-CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred ccccCchhhh-hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 6533333333 336677777777666655444555555666666644 455555555555543 4666666666665422
Q ss_pred CCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccc
Q 045619 422 CESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILT 501 (615)
Q Consensus 422 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 501 (615)
... ....+|+.+++.+++..+.+|...|. .+++|+
T Consensus 171 ~~~---f~~~~L~~l~l~~~n~l~~i~~~~f~------------------------------------------~l~~L~ 205 (350)
T 4ay9_X 171 NSA---FNGTQLDELNLSDNNNLEELPNDVFH------------------------------------------GASGPV 205 (350)
T ss_dssp TTS---STTEEEEEEECTTCTTCCCCCTTTTT------------------------------------------TEECCS
T ss_pred hhh---ccccchhHHhhccCCcccCCCHHHhc------------------------------------------cCcccc
Confidence 211 23345666666554333344433222 245577
Q ss_pred eEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcc
Q 045619 502 TIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKL 558 (615)
Q Consensus 502 ~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 558 (615)
.|++++|+++...+.. +..|+.|.+.++.-...+| .+..+++|+.+++.++..
T Consensus 206 ~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 206 ILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp EEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred hhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence 7777777777443333 3444445444443332455 366677777777766543
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=4.8e-17 Score=149.92 Aligned_cols=86 Identities=23% Similarity=0.251 Sum_probs=64.3
Q ss_pred ccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEE
Q 045619 497 ITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLN 576 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 576 (615)
+++|++|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+.+ .+++|++|+
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~ 171 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLS 171 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHH
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHH
Confidence 3556777777777776666667788888888888888875555667778888888888887664 345788888
Q ss_pred cccccceecCCCC
Q 045619 577 LSYNRLWGRIPRG 589 (615)
Q Consensus 577 l~~n~i~~~~p~~ 589 (615)
++.|.+.+.+|+.
T Consensus 172 ~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 172 EWINKHSGVVRNS 184 (208)
T ss_dssp HHHHHCTTTBBCT
T ss_pred HHHHhCCceeecc
Confidence 8888888888764
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=1.6e-16 Score=154.29 Aligned_cols=80 Identities=26% Similarity=0.353 Sum_probs=43.3
Q ss_pred cccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEc
Q 045619 498 TILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNL 577 (615)
Q Consensus 498 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 577 (615)
++|+.|++++|++++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|.++.. + .+..+++|+.|++
T Consensus 134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l 207 (291)
T 1h6t_A 134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLEL 207 (291)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEE
T ss_pred CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEEC
Confidence 4455555555555533 345555566666666665553222 55555666666666655532 2 2555556666666
Q ss_pred ccccce
Q 045619 578 SYNRLW 583 (615)
Q Consensus 578 ~~n~i~ 583 (615)
++|++.
T Consensus 208 ~~n~i~ 213 (291)
T 1h6t_A 208 FSQECL 213 (291)
T ss_dssp EEEEEE
T ss_pred cCCccc
Confidence 666554
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=152.15 Aligned_cols=64 Identities=25% Similarity=0.328 Sum_probs=48.4
Q ss_pred ccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 045619 497 ITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHG 560 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 560 (615)
+++|++|++++|++.+..+..|..+++|++|+|++|++++..|..|..+++|+.|++++|.+.+
T Consensus 104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 3556777777777776667777778888888888888876667778888888888888887765
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=2.3e-16 Score=165.95 Aligned_cols=189 Identities=28% Similarity=0.388 Sum_probs=137.2
Q ss_pred ccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEE
Q 045619 308 SLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVN 387 (615)
Q Consensus 308 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 387 (615)
+++.|++++|.+. .+|..++ ++|+.|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCCC---TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 7778888888777 4666543 47888888888877 455 223788888888888875 454 444 788888
Q ss_pred cCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCC
Q 045619 388 VGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSD 467 (615)
Q Consensus 388 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~ 467 (615)
+++|.+++ +|. .+++|+.|++++|.+... +. .+++|+.|++++|.+++ +|. +
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~-----~l~~L~~L~Ls~N~L~~-lp~-l---------------- 178 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTML-PE-----LPTSLEVLSVRNNQLTF-LPE-L---------------- 178 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSCCSC-CCC-C----------------
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCcC-CC-----cCCCcCEEECCCCCCCC-cch-h----------------
Confidence 88888866 343 577888888888887652 21 45788888888888774 332 1
Q ss_pred CccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCC-------cEEeCcCCcCcccCCc
Q 045619 468 GLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSL-------IVLNLSHNGLTGSIPV 540 (615)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~ 540 (615)
.++|+.|++++|+++ .+|. +.. +| ++|+|++|+|+ .+|.
T Consensus 179 -----------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~ 224 (571)
T 3cvr_A 179 -----------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE 224 (571)
T ss_dssp -----------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCG
T ss_pred -----------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCH
Confidence 145888888888888 4454 544 66 99999999998 6888
Q ss_pred cccCCCCCCEEeCCCCcccccchhhhhhcCc
Q 045619 541 SFANMTALESLDLSSNKLHGRILEQLLSVTA 571 (615)
Q Consensus 541 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 571 (615)
.+..+++|+.|+|++|.+++..|..+..+++
T Consensus 225 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 225 NILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp GGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 8888999999999999999888888888655
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=1.7e-16 Score=166.92 Aligned_cols=183 Identities=28% Similarity=0.379 Sum_probs=149.1
Q ss_pred CCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEc
Q 045619 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVL 412 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 412 (615)
+++.|++++|.+.+ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 79999999999885 665442 78999999999998 555 457899999999999977 555 554 9999999
Q ss_pred cCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhh
Q 045619 413 RSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVV 492 (615)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (615)
++|.+.. .+. .+++|+.|++++|.+++ +|.
T Consensus 128 s~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~-lp~------------------------------------------- 157 (571)
T 3cvr_A 128 DNNQLTM-LPE-----LPALLEYINADNNQLTM-LPE------------------------------------------- 157 (571)
T ss_dssp CSSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCC-------------------------------------------
T ss_pred CCCcCCC-CCC-----cCccccEEeCCCCccCc-CCC-------------------------------------------
Confidence 9999887 222 57899999999999874 332
Q ss_pred HHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCC-------CEEeCCCCcccccchhh
Q 045619 493 LKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTAL-------ESLDLSSNKLHGRILEQ 565 (615)
Q Consensus 493 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~~L~l~~n~~~~~~~~~ 565 (615)
.+++|+.|++++|++++ +|. +. ++|++|+|++|+|+ .+|. |.. +| +.|++++|+++ .+|..
T Consensus 158 ---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~ 225 (571)
T 3cvr_A 158 ---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPEN 225 (571)
T ss_dssp ---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGG
T ss_pred ---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHH
Confidence 14679999999999996 555 66 99999999999999 6776 554 77 99999999999 46777
Q ss_pred hhhcCcCCeEEcccccceecCCCC
Q 045619 566 LLSVTALASLNLSYNRLWGRIPRG 589 (615)
Q Consensus 566 ~~~l~~L~~L~l~~n~i~~~~p~~ 589 (615)
+..+++|+.|++++|++.+.+|..
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCHHH
Confidence 778999999999999999887763
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=3.1e-16 Score=157.45 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=26.6
Q ss_pred ccEEEcCCCcccCCCCcccC-CCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcc
Q 045619 359 LRSLDLNSNKLEGPFPRYLA-DCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRF 417 (615)
Q Consensus 359 L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 417 (615)
++.|++++|.+++..+..|. ++++|++|++++|.+++..+..|..+++|++|++++|++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 44444444444433333343 444444444444444444444444444444444444443
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=3.8e-16 Score=143.86 Aligned_cols=158 Identities=23% Similarity=0.273 Sum_probs=121.6
Q ss_pred CCCceEEEccCCcccccCcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccE
Q 045619 282 PPSTRAFLFSNNKLFGQIPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRS 361 (615)
Q Consensus 282 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~ 361 (615)
++++++|++++|.+.+..+..+..+++|++|++++|.+. .++...+...++|++|++++|.+.+ .+......+++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCCCE
Confidence 344555555555555455566788899999999999887 5554443333489999999998884 44443344489999
Q ss_pred EEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCC
Q 045619 362 LDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHN 441 (615)
Q Consensus 362 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 441 (615)
|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++. ..+++|+.|+++.|
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWIN 175 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---------CCTTTTHHHHHHHH
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---------cCCCCHHHHHHHHH
Confidence 999999998777777888999999999999998887777889999999999998754 45678899999999
Q ss_pred cCcCCCchH
Q 045619 442 EFTGFLPRW 450 (615)
Q Consensus 442 ~l~~~~~~~ 450 (615)
.+++.+|..
T Consensus 176 ~~~g~ip~~ 184 (208)
T 2o6s_A 176 KHSGVVRNS 184 (208)
T ss_dssp HCTTTBBCT
T ss_pred hCCceeecc
Confidence 999888864
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=146.35 Aligned_cols=182 Identities=20% Similarity=0.183 Sum_probs=138.7
Q ss_pred cEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhccccc
Q 045619 384 EVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDE 463 (615)
Q Consensus 384 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~ 463 (615)
+.+++++|.++. +|..+ .+.+++|++++|.+....+ ...+..+++|+.|++++|.+.+..+..
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~------------- 76 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEA-TGIFKKLPQLRKINFSNNKITDIEEGA------------- 76 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECC-CCCGGGCTTCCEEECCSSCCCEECTTT-------------
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCc-hhhhccCCCCCEEECCCCcCCEECHHH-------------
Confidence 589999999865 45444 3456899999999876432 233577889999999999887544322
Q ss_pred CCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCcccc
Q 045619 464 KGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFA 543 (615)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 543 (615)
+..+++|++|++++|++++..+..|..+++|++|+|++|++++..|..|.
T Consensus 77 ------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 126 (220)
T 2v70_A 77 ------------------------------FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI 126 (220)
T ss_dssp ------------------------------TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST
T ss_pred ------------------------------hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC
Confidence 12357799999999999988888899999999999999999988889999
Q ss_pred CCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCCCCCCCccCcccCCCcCccCCCCC
Q 045619 544 NMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLT 612 (615)
Q Consensus 544 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (615)
.+++|+.|+|++|+++...|..|..+++|++|++++|++....+......+++.-.+......|..|-.
T Consensus 127 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~~ 195 (220)
T 2v70_A 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYF 195 (220)
T ss_dssp TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESGG
T ss_pred CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCChH
Confidence 999999999999999988899999999999999999999876543211122222222222336777643
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=8.5e-16 Score=142.48 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=52.6
Q ss_pred ccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 045619 497 ITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHG 560 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 560 (615)
+++|++|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|.+.+
T Consensus 103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 4567888888888887778888888888888888888886666778888888888888888764
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.66 E-value=1.3e-15 Score=142.20 Aligned_cols=155 Identities=21% Similarity=0.273 Sum_probs=94.5
Q ss_pred cccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEE
Q 045619 358 SLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIID 437 (615)
Q Consensus 358 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 437 (615)
..+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+... ....+..+++|+.|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i--~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL--PVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc--ChhhcccCCCcCEEE
Confidence 4455555555554 333322 25566666666666555555566666666666666655331 112234455555555
Q ss_pred ccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCcc
Q 045619 438 LSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRV 517 (615)
Q Consensus 438 l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 517 (615)
+++|.+.+..+.. + ..+++|+.|++++|++. .+|..
T Consensus 95 Ls~N~l~~l~~~~-~------------------------------------------~~l~~L~~L~Ls~N~l~-~lp~~ 130 (229)
T 3e6j_A 95 LGTNQLTVLPSAV-F------------------------------------------DRLVHLKELFMCCNKLT-ELPRG 130 (229)
T ss_dssp CCSSCCCCCCTTT-T------------------------------------------TTCTTCCEEECCSSCCC-SCCTT
T ss_pred CCCCcCCccChhH-h------------------------------------------CcchhhCeEeccCCccc-ccCcc
Confidence 5555555322211 1 12456777888888877 56777
Q ss_pred ccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 045619 518 LGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGR 561 (615)
Q Consensus 518 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 561 (615)
+..+++|++|+|++|++++..+..|..+++|+.|++++|.+.+.
T Consensus 131 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 131 IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 78888888888888888865566788888888888888887754
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=1.9e-16 Score=159.01 Aligned_cols=179 Identities=24% Similarity=0.240 Sum_probs=141.5
Q ss_pred cccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccC-CCCCCcEEEccCCcccCccCCCccCCCCCcccEE
Q 045619 358 SLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLG-CLPGLNILVLRSNRFYGPLCESNIMFPFQALRII 436 (615)
Q Consensus 358 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 436 (615)
.-+.++++++.++ .+|..+. ..++.|++++|.+++..+..+. .+++|+.|++++|.+....+ ..+..+++|+.|
T Consensus 19 ~~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~--~~~~~l~~L~~L 93 (361)
T 2xot_A 19 ASNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS--EAFVPVPNLRYL 93 (361)
T ss_dssp ETTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT--TTTTTCTTCCEE
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh--hhccCCCCCCEE
Confidence 4568889988887 4555442 4689999999999998888888 99999999999999876433 345788999999
Q ss_pred EccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCc
Q 045619 437 DLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPR 516 (615)
Q Consensus 437 ~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 516 (615)
++++|.+....+.. +..+++|+.|++++|++....+.
T Consensus 94 ~Ls~N~l~~~~~~~-------------------------------------------~~~l~~L~~L~L~~N~i~~~~~~ 130 (361)
T 2xot_A 94 DLSSNHLHTLDEFL-------------------------------------------FSDLQALEVLLLYNNHIVVVDRN 130 (361)
T ss_dssp ECCSSCCCEECTTT-------------------------------------------TTTCTTCCEEECCSSCCCEECTT
T ss_pred ECCCCcCCcCCHHH-------------------------------------------hCCCcCCCEEECCCCcccEECHH
Confidence 99999887433321 12256789999999999988888
Q ss_pred cccCCCCCcEEeCcCCcCcccCCccc---cCCCCCCEEeCCCCcccccchhhhhhcCc--CCeEEccccccee
Q 045619 517 VLGDFKSLIVLNLSHNGLTGSIPVSF---ANMTALESLDLSSNKLHGRILEQLLSVTA--LASLNLSYNRLWG 584 (615)
Q Consensus 517 ~l~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~i~~ 584 (615)
.|..+++|++|+|++|+++...+..| ..+++|+.|+|++|++....+..+..++. ++.|++++|++..
T Consensus 131 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 89999999999999999985433444 56899999999999999877788888887 4889999998864
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=1.7e-15 Score=141.54 Aligned_cols=163 Identities=20% Similarity=0.189 Sum_probs=88.2
Q ss_pred CCCCCCCCCcccceeeeCCCCCcEEEEecCCCCceeecCCcccccccccccccccccccCCCCChhhhcCCCCceeeCCC
Q 045619 2 TSWAEGTDCCSWDGVTCDNVTGNVIGLDLHCSMLEGTIDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSY 81 (615)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~l~~~l~~l~~L~~L~L~~ 81 (615)
..|+.+...|+|++++|... .++ . +|..+. ++|++|++++
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~------------~l~-~-------------------------ip~~~~--~~L~~L~Ls~ 49 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSK------------RHA-S-------------------------VPAGIP--TNAQILYLHD 49 (229)
T ss_dssp -CCCCTTCEEETTEEECTTS------------CCS-S-------------------------CCSCCC--TTCSEEECCS
T ss_pred hccCCCCCEEeCCEeEccCC------------CcC-c-------------------------cCCCCC--CCCCEEEcCC
Confidence 46778999999999999632 111 1 222111 4555555555
Q ss_pred CccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhcccccccEEEcCCCCCc
Q 045619 82 TRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLSSTITVLDLSGTGMR 161 (615)
Q Consensus 82 ~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~~ 161 (615)
|.+.+..|..|.++++|++|++++|++. ...+..+..+++|++|++++|.+....+..+..+ ++|++|++++|++.
T Consensus 50 n~i~~~~~~~~~~l~~L~~L~L~~N~l~---~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l-~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 50 NQITKLEPGVFDSLINLKELYLGSNQLG---ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL-VHLKELFMCCNKLT 125 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCC
T ss_pred CccCccCHHHhhCccCCcEEECCCCCCC---CcChhhcccCCCcCEEECCCCcCCccChhHhCcc-hhhCeEeccCCccc
Confidence 5555555555555555555555555553 2222334555555555555555554444334444 55666666666555
Q ss_pred cCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCcc
Q 045619 162 GNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFT 209 (615)
Q Consensus 162 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 209 (615)
.+|..+..+++|+.|++++|++.......+..+++|+.|++.+|.+.
T Consensus 126 -~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 126 -ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp -SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred -ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 44555555666666666666544333333444556666666665543
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=1.2e-15 Score=162.38 Aligned_cols=101 Identities=26% Similarity=0.264 Sum_probs=48.2
Q ss_pred CCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEc
Q 045619 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVL 412 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 412 (615)
+|+.|++++|.+.. ++ .+. .+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+++. ..+..+++|+.|++
T Consensus 44 ~L~~L~l~~n~i~~-l~-~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 44 SIDQIIANNSDIKS-VQ-GIQ-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSL 116 (605)
T ss_dssp TCCCCBCTTCCCCC-CT-TGG-GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEEC
T ss_pred CCCEEECcCCCCCC-Ch-HHc-cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEe
Confidence 55566666555542 22 222 22555555555555553322 45555555555555555432 23455555555555
Q ss_pred cCCcccCccCCCccCCCCCcccEEEccCCcCc
Q 045619 413 RSNRFYGPLCESNIMFPFQALRIIDLSHNEFT 444 (615)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 444 (615)
++|.+... ..+..+++|+.|++++|.+.
T Consensus 117 s~N~l~~l----~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 117 EHNGISDI----NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp TTSCCCCC----GGGGGCTTCSEEECCSSCCC
T ss_pred cCCCCCCC----ccccCCCccCEEECCCCccC
Confidence 55554431 11233444444444444443
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=1.3e-15 Score=147.87 Aligned_cols=173 Identities=22% Similarity=0.233 Sum_probs=106.9
Q ss_pred hhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhccc
Q 045619 68 FLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLS 147 (615)
Q Consensus 68 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 147 (615)
+..+++|++|++++|.+.+. + .+..+++|++|++++|.+. .++. +.++++|++|++++|.+... ..+..+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~----~~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l- 111 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT----DIKP-LANLKNLGWLFLDENKVKDL--SSLKDL- 111 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC----CCGG-GTTCTTCCEEECCSSCCCCG--GGGTTC-
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC----CCcc-cccCCCCCEEECCCCcCCCC--hhhccC-
Confidence 55677788888888777643 3 4777788888888888775 2333 67777778888777776553 235555
Q ss_pred ccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCcccc--ccCCCCcCEEecCC
Q 045619 148 STITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGF--LRNSEELEFLDLSN 225 (615)
Q Consensus 148 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~L~~L~l~~ 225 (615)
++|++|++++|++.+. ..+..+++|+.|++++|++... +.+..+++|++|++++|.+.+. +..+++|++|++++
T Consensus 112 ~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 187 (291)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCC
Confidence 7777777777777642 4566777777777777754432 3344445555555555554432 44555566666666
Q ss_pred cccCcccccccccCCCcCcEEEccCCcccCcC
Q 045619 226 NRIHGRISKSDSQGWKSLTYLDISNNFLTQIE 257 (615)
Q Consensus 226 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 257 (615)
|.+. .++. +..+++|+.|++++|++...+
T Consensus 188 N~i~-~l~~--l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 188 NHIS-DLRA--LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp SCCC-BCGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred CcCC-CChh--hccCCCCCEEECcCCcccCCc
Confidence 6554 2221 355556666666665555433
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=5.6e-16 Score=141.26 Aligned_cols=84 Identities=23% Similarity=0.325 Sum_probs=62.7
Q ss_pred ccccceEeCCCCccCccCCccccCCCCCcEEeCcCCc-CcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeE
Q 045619 497 ITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNG-LTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 575 (615)
+++|++|++++|++++..+..++.+++|++|++++|+ ++ .+| .+..+++|++|++++|++.... .+..+++|++|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L 186 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQL 186 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEE
Confidence 4557777777777776667778888888888888887 65 444 6788888888888888887533 67888888888
Q ss_pred Eccccccee
Q 045619 576 NLSYNRLWG 584 (615)
Q Consensus 576 ~l~~n~i~~ 584 (615)
++++|+|.+
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 888888764
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=7.7e-16 Score=146.98 Aligned_cols=168 Identities=17% Similarity=0.219 Sum_probs=97.8
Q ss_pred CCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEc
Q 045619 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVL 412 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 412 (615)
++..++++++.+.+. + .+.. +++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|+.|++
T Consensus 20 ~l~~l~l~~~~i~~~-~-~~~~-l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V-SQKE-LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSE-E-CHHH-HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCcccc-c-chhh-cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 455666777766532 2 2222 2677777777777763 33 56667777777777777766544 677777777777
Q ss_pred cCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhh
Q 045619 413 RSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVV 492 (615)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (615)
++|++...... .. ++|+.|++++|.+.+. +.
T Consensus 93 ~~N~l~~l~~~----~~-~~L~~L~L~~N~l~~~-~~------------------------------------------- 123 (263)
T 1xeu_A 93 NRNRLKNLNGI----PS-ACLSRLFLDNNELRDT-DS------------------------------------------- 123 (263)
T ss_dssp CSSCCSCCTTC----CC-SSCCEEECCSSCCSBS-GG-------------------------------------------
T ss_pred CCCccCCcCcc----cc-CcccEEEccCCccCCC-hh-------------------------------------------
Confidence 77776552211 11 5666666666665532 10
Q ss_pred HHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 045619 493 LKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGR 561 (615)
Q Consensus 493 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 561 (615)
+..+++|+.|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++...
T Consensus 124 -l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 124 -LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 01134466666666666543 2 455666666666666666533 4455566666666666665543
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=6.2e-15 Score=136.64 Aligned_cols=113 Identities=26% Similarity=0.268 Sum_probs=51.0
Q ss_pred CCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEc
Q 045619 333 QLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVL 412 (615)
Q Consensus 333 ~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 412 (615)
+|++|++++|.+.+..+..+... ++|++|++++|.++...+..|.++++|++|++++|.+++..+..|..+++|+.|++
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 135 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHHHhhCC-cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEEC
Confidence 34444444444433223333222 44444444444444333333444455555555555554444444555555555555
Q ss_pred cCCcccCccCCCccCCCCCcccEEEccCCcCcCCCc
Q 045619 413 RSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLP 448 (615)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 448 (615)
++|.+..... ..+..+++|+.|++++|++.+...
T Consensus 136 ~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 136 YDNKLQTIAK--GTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CSSCCSCCCT--TTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCcCCEECH--HHHhCCCCCCEEEeCCCCcCCCCc
Confidence 5555443221 123444555555555555554433
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=1.3e-14 Score=154.49 Aligned_cols=182 Identities=22% Similarity=0.246 Sum_probs=98.8
Q ss_pred hhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhccc
Q 045619 68 FLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLS 147 (615)
Q Consensus 68 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 147 (615)
+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+. .++. +..+++|+.|++++|.+... ..+..+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~----~~~~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l- 108 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT----DIKP-LTNLKNLGWLFLDENKIKDL--SSLKDL- 108 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC----CCGG-GGGCTTCCEEECCSSCCCCC--TTSTTC-
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC----CChh-hccCCCCCEEECcCCCCCCC--hhhccC-
Confidence 3445555555555555542 22 3555555555555555553 2222 45555555555555554432 133444
Q ss_pred ccccEEEcCCCCCccCCCccccCCCCCcEEEcccCCCccccCCCCCCCCCccEEECCCCCcccc--ccCCCCcCEEecCC
Q 045619 148 STITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNKYLTGYLPESNWSTSLRELDLSFSNFTGF--LRNSEELEFLDLSN 225 (615)
Q Consensus 148 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~L~~L~l~~ 225 (615)
++|++|++++|.+.+. ..+..+++|+.|++++|.+.. ++.+..+++|+.|++++|.+.+. +..+++|+.|++++
T Consensus 109 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 184 (605)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC--CGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC--chhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcC
Confidence 5556666655555531 345555566666666554433 23444455566666666555443 55667777777777
Q ss_pred cccCcccccccccCCCcCcEEEccCCcccCcCCCCCCCCcE
Q 045619 226 NRIHGRISKSDSQGWKSLTYLDISNNFLTQIEQHPWKNITV 266 (615)
Q Consensus 226 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~ 266 (615)
|.+.+ ++ .+..+++|+.|++++|.+...+...+..+..
T Consensus 185 N~i~~-l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~ 222 (605)
T 1m9s_A 185 NHISD-LR--ALAGLKNLDVLELFSQECLNKPINHQSNLVV 222 (605)
T ss_dssp SCCCB-CG--GGTTCTTCSEEECCSEEEECCCCCCCSSCEE
T ss_pred CCCCC-Ch--HHccCCCCCEEEccCCcCcCCcccccccEEe
Confidence 77663 32 2466777777777777776665544444433
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=2.1e-15 Score=149.40 Aligned_cols=263 Identities=16% Similarity=0.165 Sum_probs=167.4
Q ss_pred CCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhc-------CCCcccEEEcCCCcccCCCCcccC
Q 045619 306 LSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFAN-------GSCSLRSLDLNSNKLEGPFPRYLA 378 (615)
Q Consensus 306 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~-------~~~~L~~L~l~~~~i~~~~~~~~~ 378 (615)
+++|+.|++++|.+. .....-... +.++.+.+..+.+. ..+|.. ++++|+++++.+ .++.+...+|.
T Consensus 48 l~~L~~LdLs~n~i~-~~~~~~~~~-~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIK-MYSGKAGTY-PNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEEC-CEEESSSSS-GGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred hccCeEEecCcceeE-EecCccccc-cccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 677888888888775 111000111 12334444444322 123322 147888888888 77767777888
Q ss_pred CCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcc--cCccCCCccCCCCCccc-EEEccCCcCcCCCchHHHhc-
Q 045619 379 DCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRF--YGPLCESNIMFPFQALR-IIDLSHNEFTGFLPRWIFVS- 454 (615)
Q Consensus 379 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~- 454 (615)
+|++|+.+++.+|.++.+.+.+|..+..+..+....... ........++..+..|+ .+.+.... .++..++..
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~ 198 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAG 198 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTT
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcc
Confidence 888888888888888888888888877777666655322 11112233344555665 44443321 222222222
Q ss_pred --hhhhcccccCCCCCccccccccccccceeEEecCchh-hHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcC
Q 045619 455 --LEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDV-VLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSH 531 (615)
Q Consensus 455 --~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~ 531 (615)
..+++.+.+.+. ...... .....+++|+.+++++|+++.+.+.+|.++++|++|+|.+
T Consensus 199 ~~~~~~~~l~~~~~-------------------l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 199 LQPRDINFLTIEGK-------------------LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp CCGGGCSEEEEEEC-------------------CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred cCccccceEEEeee-------------------ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 111111111110 001111 1223489999999999999988889999999999999999
Q ss_pred CcCcccCCccccCCCCCC-EEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCCCC-CCCccCc
Q 045619 532 NGLTGSIPVSFANMTALE-SLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQ-FNTFEND 598 (615)
Q Consensus 532 n~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~-~~~~~~~ 598 (615)
| ++...+.+|..+++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.+...-+..+. +++++.+
T Consensus 260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 8 8867788999999999 999998 78878889999999999999999998744333332 4455544
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=2.6e-15 Score=136.05 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=87.2
Q ss_pred cEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhccccc
Q 045619 384 EVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDE 463 (615)
Q Consensus 384 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~ 463 (615)
+.++++++.++. +|..+. .++++|++++|.+...... ..+..+++|+.|++++|.+.+..+..+
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~------------ 74 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSD-GLFGRLPHLVKLELKRNQLTGIEPNAF------------ 74 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCS-CSGGGCTTCCEEECCSSCCCCBCTTTT------------
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCc-cccccCCCCCEEECCCCCCCCcCHhHc------------
Confidence 678888888843 444333 2778888888877653322 224566777777777777765444321
Q ss_pred CCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCcccc
Q 045619 464 KGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFA 543 (615)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 543 (615)
..+++|++|++++|++++..+..|..+++|++|+|++|++++..|..|.
T Consensus 75 -------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 123 (192)
T 1w8a_A 75 -------------------------------EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123 (192)
T ss_dssp -------------------------------TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred -------------------------------CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhh
Confidence 1245577777777777766666677777777777777777766677777
Q ss_pred CCCCCCEEeCCCCccccc
Q 045619 544 NMTALESLDLSSNKLHGR 561 (615)
Q Consensus 544 ~l~~L~~L~l~~n~~~~~ 561 (615)
.+++|++|++++|.+.+.
T Consensus 124 ~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 124 HLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TCTTCCEEECTTCCBCCS
T ss_pred cCCCCCEEEeCCCCccCc
Confidence 777777777777777654
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=3.6e-15 Score=142.30 Aligned_cols=170 Identities=18% Similarity=0.274 Sum_probs=112.5
Q ss_pred CCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCcc
Q 045619 305 SLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELE 384 (615)
Q Consensus 305 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 384 (615)
.+.++..++++++.+. .++ .+..+. +|+.|++++|.+. .++ .+.. +++|++|++++|.+++..+ +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~l~-~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~L~~N~i~~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKELS-GVQNFNGDNSNIQ-SLA-GMQF-FTNLKELHLSHNQISDLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHHHT-TCSEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCSSCC
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhhcC-cCcEEECcCCCcc-cch-HHhh-CCCCCEEECCCCccCCChh--hccCCCCC
Confidence 3556667777777766 333 344443 7888888888776 333 3333 3778888888887775433 77778888
Q ss_pred EEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccC
Q 045619 385 VVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEK 464 (615)
Q Consensus 385 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~ 464 (615)
+|++++|.+++..+ +.. ++|+.|++++|.+.... .+..+++|+.|++++|.+.+. +. +
T Consensus 89 ~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~~~-~~--l------------ 146 (263)
T 1xeu_A 89 ELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLKSI-VM--L------------ 146 (263)
T ss_dssp EEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCCBC-GG--G------------
T ss_pred EEECCCCccCCcCc--ccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCCCC-hH--H------------
Confidence 88888887765432 223 77888888888776531 246677888888888877643 10 1
Q ss_pred CCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcc
Q 045619 465 GSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTG 536 (615)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 536 (615)
..+++|+.|++++|++.+. ..+..+++|+.|++++|+++.
T Consensus 147 ------------------------------~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 147 ------------------------------GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ------------------------------GGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ------------------------------ccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 1245677788888887755 557777888888888887763
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=1.5e-14 Score=131.74 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=106.9
Q ss_pred hhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhhccc
Q 045619 68 FLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVLNLS 147 (615)
Q Consensus 68 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 147 (615)
...+++|++|++++|.+. .+| .+..+++|++|++++|.+. . +..+..+++|++|++++|.+....+..+..+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~----~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l- 111 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT----N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGL- 111 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS----C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTC-
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC----c-chhhhcCCCCCEEEeECCccCcccChhhcCC-
Confidence 366777778888877777 444 5777778888888877553 2 2356677788888888777776556666666
Q ss_pred ccccEEEcCCCCCccCCCccccCCCCCcEEEcccCC-CccccCCCCCCCCCccEEECCCCCcccc--ccCCCCcCEEecC
Q 045619 148 STITVLDLSGTGMRGNFPREIFQLPHLQELHLSSNK-YLTGYLPESNWSTSLRELDLSFSNFTGF--LRNSEELEFLDLS 224 (615)
Q Consensus 148 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~L~~L~l~ 224 (615)
++|++|++++|.+.+..+..+..+++|++|++++|. +.. ++.+..+++|++|++++|.+.+. +..+++|++|+++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~--~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAF 189 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC--CGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEEC
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc--cHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEee
Confidence 778888888887776566777778888888888875 332 34556667788888888777664 6677888888888
Q ss_pred CcccC
Q 045619 225 NNRIH 229 (615)
Q Consensus 225 ~~~~~ 229 (615)
+|++.
T Consensus 190 ~N~i~ 194 (197)
T 4ezg_A 190 SQTIG 194 (197)
T ss_dssp BC---
T ss_pred CcccC
Confidence 88764
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=1.1e-14 Score=131.75 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=81.2
Q ss_pred cEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCcc
Q 045619 434 RIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAE 513 (615)
Q Consensus 434 ~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 513 (615)
+.++++++.+. .+|..++. .++.++++++........ ..+..+++|++|++++|++++.
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~~~ 69 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSD-----------------GLFGRLPHLVKLELKRNQLTGI 69 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCS-----------------CSGGGCTTCCEEECCSSCCCCB
T ss_pred CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCc-----------------cccccCCCCCEEECCCCCCCCc
Confidence 67888888875 45543221 444444444432211100 0122345566666666666555
Q ss_pred CCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccceecCCCCCCCC
Q 045619 514 IPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWGRIPRGNQFN 593 (615)
Q Consensus 514 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~p~~~~~~ 593 (615)
.|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..|..|..+++|++|++++|++.+..|......
T Consensus 70 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~ 149 (192)
T 1w8a_A 70 EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE 149 (192)
T ss_dssp CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred CHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH
Confidence 55556666666666666666655555555556666666666666655555555566666666666666654443211112
Q ss_pred CccCcccCCCcCccCCCC
Q 045619 594 TFENDSYIGNIHLCGEPL 611 (615)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~ 611 (615)
+++...+.++...|..|-
T Consensus 150 ~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 150 WLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp HHHHHCCSGGGCBBCSST
T ss_pred HHHHcCCCCCCCCCCCCh
Confidence 233333444555555543
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=130.41 Aligned_cols=113 Identities=27% Similarity=0.310 Sum_probs=92.2
Q ss_pred cccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEc
Q 045619 498 TILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNL 577 (615)
Q Consensus 498 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 577 (615)
+.|++|++++|.++ .+|..|..+++|++|+|++|++++..+..|..+++|++|+|++|+++...+..|.++++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 45888888888887 56678888888999999988888767778888888999999998888888888888888999999
Q ss_pred ccccceecCCCC-CCCCCccCcccCCCcCccCCCC
Q 045619 578 SYNRLWGRIPRG-NQFNTFENDSYIGNIHLCGEPL 611 (615)
Q Consensus 578 ~~n~i~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~ 611 (615)
++|.|.+..+.. ..+++++.+.+.+|++.|++.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 988887444432 3478888888888988888765
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=3.3e-14 Score=140.83 Aligned_cols=222 Identities=13% Similarity=0.031 Sum_probs=127.9
Q ss_pred cCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCc----CCccCccccCCCCCC
Q 045619 332 TQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNM----IGDTFPSWLGCLPGL 407 (615)
Q Consensus 332 ~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~----i~~~~~~~~~~l~~L 407 (615)
++|+.+++.. .+......+| ..+++|+++++++|.+....+.+|.++..+..+...... .......+|..+..|
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF-~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAF-KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTT-TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred CCCcEEECCc-cccchhHHHh-hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 4666666666 5542323333 333666666666666655555666666666655554421 122233445555555
Q ss_pred c-EEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEe
Q 045619 408 N-ILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTV 486 (615)
Q Consensus 408 ~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (615)
+ .+.+........... .......+++.+.+.++-.. .....+...+++|+.+++..+..
T Consensus 179 ~~~i~~~~~~~l~~~~~-~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i------------------ 238 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIM-KAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNA------------------ 238 (329)
T ss_dssp EEEEEECTTCCHHHHHH-HTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCC------------------
T ss_pred ceeEEecCCCcHHHHHh-hcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCc------------------
Confidence 5 333332211000000 00011223333333322110 11111112234444444333221
Q ss_pred cCchhhHHhhccccceEeCCCCccCccCCccccCCCCCc-EEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhh
Q 045619 487 KGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLI-VLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQ 565 (615)
Q Consensus 487 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 565 (615)
..++..++..+.+|+++++.+| +..+.+.+|.++++|+ ++++.+ +++...+.+|..+++|+.+++++|.+..+.+.+
T Consensus 239 ~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~a 316 (329)
T 3sb4_A 239 TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDEL 316 (329)
T ss_dssp CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTT
T ss_pred ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhh
Confidence 1122333455778999999987 7778889999999999 999998 788677899999999999999999999899999
Q ss_pred hhhcCcCCeEEc
Q 045619 566 LLSVTALASLNL 577 (615)
Q Consensus 566 ~~~l~~L~~L~l 577 (615)
|.++++|+.++.
T Consensus 317 F~~~~~L~~ly~ 328 (329)
T 3sb4_A 317 FGNGVPSKLIYK 328 (329)
T ss_dssp TCTTCCCCEEEC
T ss_pred hcCCcchhhhcc
Confidence 999999999874
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=2.1e-16 Score=167.23 Aligned_cols=90 Identities=31% Similarity=0.448 Sum_probs=75.7
Q ss_pred ccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccc-hhhhhhcCcCCeE
Q 045619 497 ITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRI-LEQLLSVTALASL 575 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L 575 (615)
+++|+.|++++|.++ .+|..++.+++|+.|+|++|++++ +| .|..+++|+.|+|++|++++.. |..+..+++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 566888889888888 677888899999999999998884 66 7888899999999999988776 8888889999999
Q ss_pred EcccccceecCCCC
Q 045619 576 NLSYNRLWGRIPRG 589 (615)
Q Consensus 576 ~l~~n~i~~~~p~~ 589 (615)
++++|++.+..|..
T Consensus 539 ~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 539 NLQGNSLCQEEGIQ 552 (567)
T ss_dssp ECTTSGGGGSSSCT
T ss_pred EecCCcCCCCccHH
Confidence 99999988766654
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=1.8e-13 Score=121.15 Aligned_cols=84 Identities=21% Similarity=0.177 Sum_probs=42.7
Q ss_pred cceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccC-CccccCCCCCCEEeCCCCcccccch---hhhhhcCcCCeE
Q 045619 500 LTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSI-PVSFANMTALESLDLSSNKLHGRIL---EQLLSVTALASL 575 (615)
Q Consensus 500 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L 575 (615)
|+.|++++|++.+..|..+..+++|++|++++|++++.. +..+..+++|+.|++++|.++...+ ..+..+++|++|
T Consensus 73 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence 333333333333333344444555555555555555221 1455555666666666666554433 355566666666
Q ss_pred Ecccccce
Q 045619 576 NLSYNRLW 583 (615)
Q Consensus 576 ~l~~n~i~ 583 (615)
++++|.+.
T Consensus 153 ~l~~n~~~ 160 (168)
T 2ell_A 153 DGYDREDQ 160 (168)
T ss_dssp TTEETTSC
T ss_pred cCCCCChh
Confidence 66666553
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=7.3e-16 Score=163.08 Aligned_cols=204 Identities=18% Similarity=0.170 Sum_probs=125.0
Q ss_pred cCCCccceeeccccccCCCCCCChhccccCCcEEEccCCc-------------ccccCchhhhcCCCcccEEE-cCCCcc
Q 045619 304 CSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNK-------------LQGRIPDAFANGSCSLRSLD-LNSNKL 369 (615)
Q Consensus 304 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-------------i~~~~~~~~~~~~~~L~~L~-l~~~~i 369 (615)
..++.|+.|++++|.+. .+|..+..+. +|+.|+++++. ..+..|..+.. +++|+.|+ ++.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~-l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-FSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH-HHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHHHHhcccccCCHHHHHH-HHhcccCcchhhccc
Confidence 34667777777777775 6666666654 67777765543 12122222221 24455444 333322
Q ss_pred cCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCch
Q 045619 370 EGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPR 449 (615)
Q Consensus 370 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 449 (615)
. .|+.+.+.+|.++...+ ..|+.|++++|.+.+. + . +..+++|+.|++++|.+. .+|.
T Consensus 423 ~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p-~--~~~l~~L~~L~Ls~N~l~-~lp~ 480 (567)
T 1dce_A 423 D-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-C-H--LEQLLLVTHLDLSHNRLR-ALPP 480 (567)
T ss_dssp H-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-C-C--GGGGTTCCEEECCSSCCC-CCCG
T ss_pred c-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCCC-c-C--ccccccCcEeecCccccc-ccch
Confidence 1 12222223333322111 1355666666655542 1 1 355666666777766666 4443
Q ss_pred HHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeC
Q 045619 450 WIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNL 529 (615)
Q Consensus 450 ~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L 529 (615)
.+ ..+++|+.|++++|++++ +| .++.+++|++|+|
T Consensus 481 ~~-------------------------------------------~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 481 AL-------------------------------------------AALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp GG-------------------------------------------GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred hh-------------------------------------------hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 21 125668889999999886 55 7899999999999
Q ss_pred cCCcCcccC-CccccCCCCCCEEeCCCCcccccchh---hhhhcCcCCeEEc
Q 045619 530 SHNGLTGSI-PVSFANMTALESLDLSSNKLHGRILE---QLLSVTALASLNL 577 (615)
Q Consensus 530 ~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~l 577 (615)
++|++++.. |..|..+++|+.|++++|++++..+. .+..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999665 89999999999999999999876442 3455889998864
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=2.3e-13 Score=117.68 Aligned_cols=64 Identities=20% Similarity=0.143 Sum_probs=29.7
Q ss_pred CccccCCCCCcEEeCcCCcCccc-CCccccCCCCCCEEeCCCCcccccch---hhhhhcCcCCeEEcc
Q 045619 515 PRVLGDFKSLIVLNLSHNGLTGS-IPVSFANMTALESLDLSSNKLHGRIL---EQLLSVTALASLNLS 578 (615)
Q Consensus 515 ~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~ 578 (615)
|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|++|+++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 33333444444444444444421 12444555555555555555544333 344555555555543
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=2.6e-12 Score=129.88 Aligned_cols=230 Identities=10% Similarity=0.103 Sum_probs=131.2
Q ss_pred ccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCC
Q 045619 301 PSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADC 380 (615)
Q Consensus 301 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l 380 (615)
.+|.++ +|+.+.+.. .+. .+....+..+++|+.+++..+.+......+|. . ++|+.+.+..+ ++.....+|.++
T Consensus 152 ~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~-~~L~~l~lp~~-l~~I~~~aF~~~ 225 (401)
T 4fdw_A 152 MAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y-AGIEEVLLPVT-LKEIGSQAFLKT 225 (401)
T ss_dssp TTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T-CCCSEEECCTT-CCEECTTTTTTC
T ss_pred HhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-e-cccCEEEeCCc-hheehhhHhhCC
Confidence 344442 455555554 333 33333333333566666666555532222332 2 56666666533 444555566666
Q ss_pred CCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcc
Q 045619 381 DELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKN 460 (615)
Q Consensus 381 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~ 460 (615)
++|+.+++.++ ++.+...+|.+ .+|+.+.+.++ +.. ....++..|++|+.+++.++.+.....
T Consensus 226 ~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~--I~~~aF~~c~~L~~l~l~~~~~~~~~~------------ 288 (401)
T 4fdw_A 226 SQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTN--IASRAFYYCPELAEVTTYGSTFNDDPE------------ 288 (401)
T ss_dssp TTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCE--ECTTTTTTCTTCCEEEEESSCCCCCTT------------
T ss_pred CCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccE--EChhHhhCCCCCCEEEeCCccccCCcc------------
Confidence 66666666653 44555555655 56666666332 221 233445666666666666554430000
Q ss_pred cccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCc
Q 045619 461 VDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPV 540 (615)
Q Consensus 461 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 540 (615)
..+....+..|++|+.+++.. .++.+...+|.++++|+.+.|..+ ++.....
T Consensus 289 --------------------------~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 289 --------------------------AMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp --------------------------CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred --------------------------cEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 011222334466677777773 466666778888888888888554 6656677
Q ss_pred cccCCCCCCEEeCCCCcccccchhhhhhcC-cCCeEEcccccc
Q 045619 541 SFANMTALESLDLSSNKLHGRILEQLLSVT-ALASLNLSYNRL 582 (615)
Q Consensus 541 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~i 582 (615)
+|..+ +|+.+++++|.........|.+++ .++.|++..+.+
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 78887 888888888877766666777764 677777776654
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.43 E-value=4.7e-13 Score=119.48 Aligned_cols=113 Identities=25% Similarity=0.236 Sum_probs=70.0
Q ss_pred cccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEc
Q 045619 498 TILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNL 577 (615)
Q Consensus 498 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 577 (615)
++|++|++++|++.+..+..|+.+++|++|++++|++++..+..|..+++|+.|++++|+++...+..|..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 44666666666666555555666666666666666666444455666666666666666666655555666666666666
Q ss_pred ccccceecCCCC-CCCCCccCcccCCCcCccCCC
Q 045619 578 SYNRLWGRIPRG-NQFNTFENDSYIGNIHLCGEP 610 (615)
Q Consensus 578 ~~n~i~~~~p~~-~~~~~~~~~~~~~~~~~~~~~ 610 (615)
++|.+.+..+.. ..+++++.+.+.+|+..|+.|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 666665333322 235666666666666666543
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=1.2e-13 Score=150.77 Aligned_cols=144 Identities=24% Similarity=0.253 Sum_probs=95.6
Q ss_pred cCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccc
Q 045619 396 TFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREE 475 (615)
Q Consensus 396 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 475 (615)
..+..+..++.|+.|++++|.+... +. .+..+++|+.|++++|.++ .+|..+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l-~~--~~~~l~~L~~L~Ls~N~l~-~lp~~~------------------------ 266 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNI-SA--NIFKYDFLTRLYLNGNSLT-ELPAEI------------------------ 266 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCC-CG--GGGGCCSCSCCBCTTSCCS-CCCGGG------------------------
T ss_pred cChhhhccCCCCcEEECCCCCCCCC-Ch--hhcCCCCCCEEEeeCCcCc-ccChhh------------------------
Confidence 3345555666666666666665421 11 1135566777777777766 444321
Q ss_pred cccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCC
Q 045619 476 DYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSS 555 (615)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 555 (615)
..+++|+.|+|++|+++ .+|..|..+++|++|+|++|.++ .+|..|..+++|+.|+|++
T Consensus 267 -------------------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 267 -------------------KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp -------------------GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred -------------------hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 22566888888888888 56888888899999999999887 7788888889999999999
Q ss_pred CcccccchhhhhhcC-cCCeEEcccccceecCCC
Q 045619 556 NKLHGRILEQLLSVT-ALASLNLSYNRLWGRIPR 588 (615)
Q Consensus 556 n~~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~p~ 588 (615)
|.+++..|..+..+. .+..+++++|.+.+.+|.
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 998888888776542 223466777777776665
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=5.5e-13 Score=117.95 Aligned_cols=132 Identities=22% Similarity=0.230 Sum_probs=75.1
Q ss_pred CCcEEEEecCCCCce-eecCCcccccccccccccccccccCCCCChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcE
Q 045619 22 TGNVIGLDLHCSMLE-GTIDDNSTLFHLLRLQSLAFNNFNGSQISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTH 100 (615)
Q Consensus 22 ~~~l~~l~l~~~~~~-~~~~~~~~~~~~~~L~~L~~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 100 (615)
+.++++|++++|.+. +. +|..+..+++|++|++++|.+++. ..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~-------------------------i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~ 75 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGK-------------------------IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKK 75 (168)
T ss_dssp TTSCSEEECCSCBCBTTB-------------------------CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCE
T ss_pred cccCCEEECCCCCCChhh-------------------------HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCE
Confidence 456777777777665 33 444445555566666666555533 44555566666
Q ss_pred EecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCc-hhhhcccccccEEEcCCCCCccCCC---ccccCCCCCcE
Q 045619 101 LDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEP-FSVLNLSSTITVLDLSGTGMRGNFP---REIFQLPHLQE 176 (615)
Q Consensus 101 L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~ 176 (615)
|++++|.+. ..+|..+.++++|++|++++|.+..... ..+..+ ++|++|++++|.+....+ ..+..+++|+.
T Consensus 76 L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 76 LELSENRIF---GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL-ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp EEEESCCCC---SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSC-SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred EECcCCcCc---hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcC-CCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 666666554 2244455555666666666655554322 334444 666666666666654333 35666777777
Q ss_pred EEcccCCC
Q 045619 177 LHLSSNKY 184 (615)
Q Consensus 177 L~l~~~~~ 184 (615)
|++++|..
T Consensus 152 L~l~~n~~ 159 (168)
T 2ell_A 152 LDGYDRED 159 (168)
T ss_dssp ETTEETTS
T ss_pred ecCCCCCh
Confidence 77777644
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.41 E-value=2.9e-12 Score=115.79 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=111.3
Q ss_pred ceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcC
Q 045619 310 EYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVG 389 (615)
Q Consensus 310 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 389 (615)
+.++++++.+. .+|..+. +++++|++++|.+. .+|..+... ++|++|++++|.++...+..|.++++|++|+++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l-~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcc-cCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 56788888887 7776543 47999999999887 666655544 899999999999998777889999999999999
Q ss_pred CCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhch
Q 045619 390 NNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSL 455 (615)
Q Consensus 390 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 455 (615)
+|.++...+..|..+++|+.|++++|.+... ....+..+++|+.|++++|++.+.....++..+
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~ 150 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVV--PEGAFNDLSALSHLAIGANPLYCDCNMQWLSDW 150 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBC--CTTTTTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCee--ChhhhhcCccccEEEeCCCCeecCCcCHHHHHH
Confidence 9999888888899999999999999998753 333457788999999999999877665555443
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.41 E-value=1.3e-12 Score=116.59 Aligned_cols=63 Identities=27% Similarity=0.273 Sum_probs=32.2
Q ss_pred cccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 045619 498 TILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHG 560 (615)
Q Consensus 498 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 560 (615)
++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 445555555555554444445555555555555555553333334445555555555555544
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.40 E-value=3.1e-12 Score=129.33 Aligned_cols=243 Identities=14% Similarity=0.138 Sum_probs=154.7
Q ss_pred CCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCCCCccE
Q 045619 306 LSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADCDELEV 385 (615)
Q Consensus 306 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 385 (615)
+..++.+.+.+. +. .++...+... +|+.+.+..+ +......+|.. ++|+.+.+.. .+......+|.+|++|+.
T Consensus 112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~--~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN--STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT--CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCC--CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 345555555432 22 2333333333 5666666554 33233334433 3577777764 455455566777777777
Q ss_pred EEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCC
Q 045619 386 VNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKG 465 (615)
Q Consensus 386 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~ 465 (615)
+++.+|.++.+...+|. +.+|+.+.+.++ +.. ....++..+++|+.+++..+ +. .++...|.+ .+|+.+.+..
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~--I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~ 257 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKE--IGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN 257 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCE--ECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hhe--ehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC
Confidence 77777766666656665 466777776643 222 23345566677777776653 22 233333444 4444444322
Q ss_pred CCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccC-----ccCCccccCCCCCcEEeCcCCcCcccCCc
Q 045619 466 SDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQ-----AEIPRVLGDFKSLIVLNLSHNGLTGSIPV 540 (615)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 540 (615)
. +..+...++..|++|+.+++.++.+. .+.+.+|.++++|+.+.|. +.++.....
T Consensus 258 ~-------------------i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~ 317 (401)
T 4fdw_A 258 G-------------------VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQG 317 (401)
T ss_dssp T-------------------CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTT
T ss_pred C-------------------ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhh
Confidence 1 22334455667888999999887664 4677899999999999999 458767788
Q ss_pred cccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEccccccee
Q 045619 541 SFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLWG 584 (615)
Q Consensus 541 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~ 584 (615)
+|..+++|+.++|..+ +..+...+|.++ +|+.+++.+|.+..
T Consensus 318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 9999999999999665 777888899999 99999999997753
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.40 E-value=1.5e-11 Score=124.93 Aligned_cols=215 Identities=16% Similarity=0.156 Sum_probs=116.1
Q ss_pred ccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccCCC
Q 045619 301 PSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLADC 380 (615)
Q Consensus 301 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l 380 (615)
.+|.++++|+.+.+..+ +. .+....+.....|+.+.+..+... ........ .+|+.+.+... ++.....+|.++
T Consensus 179 ~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~-~~l~~i~ip~~-~~~i~~~~f~~~ 252 (394)
T 4fs7_A 179 GLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSK-TGVKNIIIPDS-FTELGKSVFYGC 252 (394)
T ss_dssp TTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT-CCCCEEEECTT-CCEECSSTTTTC
T ss_pred ccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhccc-CCCceEEECCC-ceeccccccccc
Confidence 44555666666665544 22 222222222235555555444321 11112222 56777766543 232444567777
Q ss_pred CCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcc
Q 045619 381 DELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKN 460 (615)
Q Consensus 381 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~ 460 (615)
..++.+.+..+.. .+....|..+..++.+......+ ...++..+.+|+.+.+..+ +. .++..
T Consensus 253 ~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i-----~~~~F~~~~~L~~i~l~~~-i~-~I~~~---------- 314 (394)
T 4fs7_A 253 TDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV-----PEKTFYGCSSLTEVKLLDS-VK-FIGEE---------- 314 (394)
T ss_dssp SSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE-----CTTTTTTCTTCCEEEECTT-CC-EECTT----------
T ss_pred ccceeEEcCCCcc-eeeccccccccccceeccCceee-----ccccccccccccccccccc-cc-eechh----------
Confidence 7777777766533 45556677777777777665432 2234456667777666543 22 11111
Q ss_pred cccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCc
Q 045619 461 VDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPV 540 (615)
Q Consensus 461 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 540 (615)
++..|.+|+.+++..+ ++.+...+|.++++|+++.|..+ ++.....
T Consensus 315 --------------------------------aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 315 --------------------------------AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp --------------------------------TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred --------------------------------hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 2233455566666433 44455667777777777777655 5545566
Q ss_pred cccCCCCCCEEeCCCCcccccchhhhhhcCcCCeE
Q 045619 541 SFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575 (615)
Q Consensus 541 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 575 (615)
+|..+++|+.+++..+ +. ....+|.++++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 7777777777777654 22 223456666666554
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=4.9e-13 Score=115.65 Aligned_cols=111 Identities=20% Similarity=0.234 Sum_probs=63.6
Q ss_pred CChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCC-chh
Q 045619 64 ISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIE-PFS 142 (615)
Q Consensus 64 l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~ 142 (615)
+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+. ..+|..+..+++|++|++++|.+.... +..
T Consensus 34 ~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~ 108 (149)
T 2je0_A 34 LEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS---GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP 108 (149)
T ss_dssp CCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC---SCTHHHHHHCTTCCEEECTTSCCCSHHHHGG
T ss_pred HHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc---chHHHHhhhCCCCCEEECCCCcCCChHHHHH
Confidence 444555566666666666666544 45566666666666666654 335555555666666666666655432 233
Q ss_pred hhcccccccEEEcCCCCCccCCC---ccccCCCCCcEEEcc
Q 045619 143 VLNLSSTITVLDLSGTGMRGNFP---REIFQLPHLQELHLS 180 (615)
Q Consensus 143 ~~~l~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 180 (615)
+..+ ++|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 109 ~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 109 LKKL-ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GGGC-TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HhhC-CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 4444 666666666666654433 345566666666654
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=2e-12 Score=115.22 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=40.4
Q ss_pred cceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCc--cccCCCCCCEEeCCCCcccccchh----hhhhcCcCC
Q 045619 500 LTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPV--SFANMTALESLDLSSNKLHGRILE----QLLSVTALA 573 (615)
Q Consensus 500 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~ 573 (615)
|+.|++++|++++..+..+..+++|++|++++|+++ .+|. .+..+++|+.|++++|.+.. .|. .+..+++|+
T Consensus 66 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 66 LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVR 143 (176)
T ss_dssp CCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCS
T ss_pred CCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccc
Confidence 444444444444333333355555555555555554 2333 45555555555555555542 222 255555555
Q ss_pred eEEcccccce
Q 045619 574 SLNLSYNRLW 583 (615)
Q Consensus 574 ~L~l~~n~i~ 583 (615)
+|++++|.+.
T Consensus 144 ~Ld~~~n~~~ 153 (176)
T 1a9n_A 144 VLDFQKVKLK 153 (176)
T ss_dssp EETTEECCHH
T ss_pred eeCCCcCCHH
Confidence 5555555543
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=1.4e-13 Score=150.34 Aligned_cols=115 Identities=30% Similarity=0.349 Sum_probs=61.7
Q ss_pred CcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccC
Q 045619 299 IPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLA 378 (615)
Q Consensus 299 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 378 (615)
.+..+..++.|+.|++++|.+. .+|..++.+. +|++|+|++|.+. .+|..+... ++|++|+|++|.++ .+|..|.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYD-FLTRLYLNGNSLT-ELPAEIKNL-SNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCC-SCSCCBCTTSCCS-CCCGGGGGG-TTCCEEECTTSCCS-SCCSSGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCC-CCCEEEeeCCcCc-ccChhhhCC-CCCCEEeCcCCcCC-ccChhhc
Confidence 3445555666666666666665 5555555443 5666666666655 455444332 55666666666655 4455555
Q ss_pred CCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccC
Q 045619 379 DCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYG 419 (615)
Q Consensus 379 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 419 (615)
.+++|++|+|++|.++ .+|..|..+++|+.|++++|++.+
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 5666666666666553 334445555555555555555543
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.36 E-value=5.9e-11 Score=120.47 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=35.9
Q ss_pred hhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecc
Q 045619 66 PEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLG 131 (615)
Q Consensus 66 ~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 131 (615)
.+|.++++|+.+.+..+ ++.....+|.++.+|+.+++.++ +. ..-...+.++.+|+.+.+.
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~---~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK---MIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC---EECTTTTTTCTTCCCCCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce---Eccchhhcccccchhhccc
Confidence 35777777777777643 44455566777777777777654 22 1112344566666655544
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=3.9e-12 Score=112.36 Aligned_cols=90 Identities=24% Similarity=0.216 Sum_probs=79.9
Q ss_pred cccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEc
Q 045619 498 TILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNL 577 (615)
Q Consensus 498 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 577 (615)
+.|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++....+..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 56899999999999888888999999999999999999766777889999999999999999887778999999999999
Q ss_pred ccccceecCC
Q 045619 578 SYNRLWGRIP 587 (615)
Q Consensus 578 ~~n~i~~~~p 587 (615)
++|++...-+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999976544
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.31 E-value=6.5e-12 Score=110.94 Aligned_cols=108 Identities=25% Similarity=0.247 Sum_probs=95.7
Q ss_pred cceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEccc
Q 045619 500 LTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSY 579 (615)
Q Consensus 500 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 579 (615)
.+++++++++++. +|..+ .++|++|+|++|++++..|..|..+++|++|+|++|+++...+..|.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 6789999999985 56555 38999999999999977789999999999999999999988888899999999999999
Q ss_pred ccceecCCC-CCCCCCccCcccCCCcCccCCC
Q 045619 580 NRLWGRIPR-GNQFNTFENDSYIGNIHLCGEP 610 (615)
Q Consensus 580 n~i~~~~p~-~~~~~~~~~~~~~~~~~~~~~~ 610 (615)
|.|.+..|. ...+++++.|.+.+|+..|+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999865554 3458999999999999999975
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=1.2e-11 Score=109.66 Aligned_cols=88 Identities=25% Similarity=0.221 Sum_probs=78.3
Q ss_pred cccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEc
Q 045619 498 TILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNL 577 (615)
Q Consensus 498 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 577 (615)
++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++....+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 56899999999999888889999999999999999999655666789999999999999999777777999999999999
Q ss_pred ccccceec
Q 045619 578 SYNRLWGR 585 (615)
Q Consensus 578 ~~n~i~~~ 585 (615)
++|++...
T Consensus 113 ~~N~~~c~ 120 (174)
T 2r9u_A 113 YNNPWDCE 120 (174)
T ss_dssp CSSCBCTT
T ss_pred CCCCcccc
Confidence 99998744
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=1.6e-11 Score=108.70 Aligned_cols=108 Identities=20% Similarity=0.190 Sum_probs=94.5
Q ss_pred cceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEccc
Q 045619 500 LTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSY 579 (615)
Q Consensus 500 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 579 (615)
-+.++++++++. .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|+++...+..|.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999997 5565554 8999999999999987789999999999999999999988777889999999999999
Q ss_pred ccceecCCC-CCCCCCccCcccCCCcCccCCC
Q 045619 580 NRLWGRIPR-GNQFNTFENDSYIGNIHLCGEP 610 (615)
Q Consensus 580 n~i~~~~p~-~~~~~~~~~~~~~~~~~~~~~~ 610 (615)
|.|.+..|. ...+++++.|.+.+|+..|+++
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999855444 3458999999999999999875
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=1.1e-13 Score=126.11 Aligned_cols=83 Identities=24% Similarity=0.207 Sum_probs=59.6
Q ss_pred ccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCC-ccccCCCCCCEEeCCCCcccccchh----------h
Q 045619 497 ITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIP-VSFANMTALESLDLSSNKLHGRILE----------Q 565 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~----------~ 565 (615)
+++|+.|++++|++++ .+ .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|. .
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 3557777788887775 33 57778888888888888874222 4677788888888888888765543 3
Q ss_pred hhhcCcCCeEEcccccce
Q 045619 566 LLSVTALASLNLSYNRLW 583 (615)
Q Consensus 566 ~~~l~~L~~L~l~~n~i~ 583 (615)
+..+++|+.|+ ++++.
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 77788888876 66664
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=1.5e-11 Score=109.50 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=42.4
Q ss_pred CCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcch-hhccCCCCCCEEecccccCCCCCc-hhhhcccccc
Q 045619 73 ELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFD-LLASNLTKLSVLNLGWADRSLIEP-FSVLNLSSTI 150 (615)
Q Consensus 73 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~~L 150 (615)
+|++|++++|.+++. ..+..+++|++|++++|.+. .+| ..+..+++|++|++++|.+..... ..+..+ ++|
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l-~~L 115 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC----RIGEGLDQALPDLTELILTNNSLVELGDLDPLASL-KSL 115 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC----EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGC-TTC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc----ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcC-CCC
Confidence 444444444444432 23444444444444444443 122 122444444444444444432221 122233 444
Q ss_pred cEEEcCCCCCccCCCc----cccCCCCCcEEEcccC
Q 045619 151 TVLDLSGTGMRGNFPR----EIFQLPHLQELHLSSN 182 (615)
Q Consensus 151 ~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~ 182 (615)
++|++++|.+.. .+. .+..+++|+.|++++|
T Consensus 116 ~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 116 TYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEEC
T ss_pred CEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcC
Confidence 444444444442 222 1444445555554444
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=9.7e-13 Score=131.68 Aligned_cols=174 Identities=20% Similarity=0.132 Sum_probs=100.8
Q ss_pred CcccEEEcCCCcccCCCCccc----C-CCCCccEEEcCCCcCCccCccccC-CCCCCcEEEccCCcccCccCCCc--cC-
Q 045619 357 CSLRSLDLNSNKLEGPFPRYL----A-DCDELEVVNVGNNMIGDTFPSWLG-CLPGLNILVLRSNRFYGPLCESN--IM- 427 (615)
Q Consensus 357 ~~L~~L~l~~~~i~~~~~~~~----~-~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~--~~- 427 (615)
++|++|++++|.++......+ . ..+.|++|++++|.+++.....+. .+++|+.|++++|.+........ .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 578888888888764322222 2 236888888888887655443332 45567777777776653221111 01
Q ss_pred CCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEeCCC
Q 045619 428 FPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTIDLSS 507 (615)
Q Consensus 428 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 507 (615)
...++|+.|++++|.++......+.. .....++|++|++++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~---------------------------------------~L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLME---------------------------------------GLAGNTSVTHLSLLH 192 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHH---------------------------------------HHHTCSSCCEEECTT
T ss_pred hcCCccceeeCCCCCCChHHHHHHHH---------------------------------------HHhcCCCcCEEeCCC
Confidence 23456777777777665221111111 112245577777777
Q ss_pred CccCccC----CccccCCCCCcEEeCcCCcCccc----CCccccCCCCCCEEeCCCCcccccchhhhhhc
Q 045619 508 NQFQAEI----PRVLGDFKSLIVLNLSHNGLTGS----IPVSFANMTALESLDLSSNKLHGRILEQLLSV 569 (615)
Q Consensus 508 ~~i~~~~----~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 569 (615)
|.+.+.. +..+...++|++|+|++|.+++. +...+...++|++|+|++|.++......+..+
T Consensus 193 N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 193 TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 7776432 34556666777777777777642 23344455777777777777766555555544
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=3.9e-13 Score=134.57 Aligned_cols=190 Identities=15% Similarity=0.083 Sum_probs=114.7
Q ss_pred cCCcEEEccCCcccccCchhhh----cCCCcccEEEcCCCcccCCCCccc-CCCCCccEEEcCCCcCCccCcccc-----
Q 045619 332 TQLTILHLNNNKLQGRIPDAFA----NGSCSLRSLDLNSNKLEGPFPRYL-ADCDELEVVNVGNNMIGDTFPSWL----- 401 (615)
Q Consensus 332 ~~L~~L~L~~~~i~~~~~~~~~----~~~~~L~~L~l~~~~i~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~----- 401 (615)
+.|+.|++++|.+.......+. ...++|++|++++|.++......+ ..+.+|++|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4788888888887643332222 222588888888888764332222 235678888888888876655444
Q ss_pred CCCCCCcEEEccCCcccCccCCC--ccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccc
Q 045619 402 GCLPGLNILVLRSNRFYGPLCES--NIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQ 479 (615)
Q Consensus 402 ~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~ 479 (615)
...+.|++|++++|.+....... ..+...++|+.|++++|.+.+.....+..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-------------------------- 205 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-------------------------- 205 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH--------------------------
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH--------------------------
Confidence 34678888888888875422111 12245677888888888876322211111
Q ss_pred cceeEEecCchhhHHhhccccceEeCCCCccCcc----CCccccCCCCCcEEeCcCCcCcccCCccccCC---C--CCCE
Q 045619 480 DSVTVTVKGRDVVLKRIITILTTIDLSSNQFQAE----IPRVLGDFKSLIVLNLSHNGLTGSIPVSFANM---T--ALES 550 (615)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l---~--~L~~ 550 (615)
.+...++|++|++++|.+++. +...+...++|++|+|++|.|++.....+..+ . .|+.
T Consensus 206 -------------~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~ 272 (372)
T 3un9_A 206 -------------QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARV 272 (372)
T ss_dssp -------------HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEE
T ss_pred -------------HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchh
Confidence 112245688888888888753 33445567888888888888875443333322 2 2666
Q ss_pred Ee--CCCCcccc
Q 045619 551 LD--LSSNKLHG 560 (615)
Q Consensus 551 L~--l~~n~~~~ 560 (615)
+. +..+.+..
T Consensus 273 l~~ll~~~~~~~ 284 (372)
T 3un9_A 273 VVSLTEGTAVSE 284 (372)
T ss_dssp ECCCC----CHH
T ss_pred hHhhhcCCccCH
Confidence 66 66666654
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=1.6e-12 Score=118.34 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=58.8
Q ss_pred ChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCcCccccCcchhhccCCCCCCEEecccccCCCCCchhhh
Q 045619 65 SPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCDMTIEQKSFDLLASNLTKLSVLNLGWADRSLIEPFSVL 144 (615)
Q Consensus 65 ~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 144 (615)
|..+..+++|++|++++|.+++ +| .+.++++|++|++++|.+. .+|..+..+++|++|++++|.+... ..+.
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~----~l~~~~~~~~~L~~L~L~~N~l~~l--~~~~ 112 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK----KIENLDAVADTLEELWISYNQIASL--SGIE 112 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC----SCSSHHHHHHHCSEEEEEEEECCCH--HHHH
T ss_pred hHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc----cccchhhcCCcCCEEECcCCcCCcC--Cccc
Confidence 3356666666666666666653 34 5666666666666666553 3444445555666666666555442 1333
Q ss_pred cccccccEEEcCCCCCccCCC-ccccCCCCCcEEEcccC
Q 045619 145 NLSSTITVLDLSGTGMRGNFP-REIFQLPHLQELHLSSN 182 (615)
Q Consensus 145 ~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 182 (615)
.+ ++|++|++++|.+..... ..+..+++|++|++++|
T Consensus 113 ~l-~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 113 KL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cC-CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 33 555555555555542211 23445555555555555
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.11 E-value=7.7e-09 Score=104.85 Aligned_cols=105 Identities=17% Similarity=0.119 Sum_probs=68.2
Q ss_pred hHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCc
Q 045619 492 VLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTA 571 (615)
Q Consensus 492 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 571 (615)
.++..++.|+.+.+. +.++.+...+|.++.+|+++.|..+ ++.....+|..+.+|+.+.|..+ ++.+...+|.++++
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 334556777777775 3455566677888888888888754 66556677888888888888654 56566778888888
Q ss_pred CCeEEcccccceecCCCCCCCCCccCcccC
Q 045619 572 LASLNLSYNRLWGRIPRGNQFNTFENDSYI 601 (615)
Q Consensus 572 L~~L~l~~n~i~~~~p~~~~~~~~~~~~~~ 601 (615)
|+.+++.++... +........++.+.+.
T Consensus 359 L~~i~~~~~~~~--~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 359 LNNIEYSGSRSQ--WNAISTDSGLQNLPVA 386 (394)
T ss_dssp CCEEEESSCHHH--HHTCBCCCCC------
T ss_pred CCEEEECCceee--hhhhhccCCCCEEEeC
Confidence 888888877543 2233334556665554
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.10 E-value=2e-08 Score=101.74 Aligned_cols=134 Identities=15% Similarity=0.204 Sum_probs=79.6
Q ss_pred CcccccCCCccceeeccccccCCCCCCChhccccCCcEEEccCCcccccCchhhhcCCCcccEEEcCCCcccCCCCcccC
Q 045619 299 IPPSICSLSSLEYLSLSHNNLNGTIPPCLGNFSTQLTILHLNNNKLQGRIPDAFANGSCSLRSLDLNSNKLEGPFPRYLA 378 (615)
Q Consensus 299 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 378 (615)
...+|..+..|+.+.+.+... .+....+...+.|+.+.+.. .+. .++...+..+.+|+.+.+..+ ++.....+|.
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred ccceeeecccccEEecccccc--eecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 345667778888887765432 22333333334788887753 233 233333344478888888754 5556667888
Q ss_pred CCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCCcccCccCCCccCCCCCcccEEEccCCcC
Q 045619 379 DCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSNRFYGPLCESNIMFPFQALRIIDLSHNEF 443 (615)
Q Consensus 379 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 443 (615)
+|.+|+.+.+..+ ++.+...+|.+|++|+.+++.++.... .++..+..|+.+.+..+.+
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-----NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-----HTCBCCCCC----------
T ss_pred CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-----hhhhccCCCCEEEeCCCCE
Confidence 8888888888654 667777888888888888888765321 2345667777777765543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=1.6e-10 Score=115.15 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=80.7
Q ss_pred eEeCCCC-ccCccCCccccCCCCCcEEeCcC-CcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEccc
Q 045619 502 TIDLSSN-QFQAEIPRVLGDFKSLIVLNLSH-NGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSY 579 (615)
Q Consensus 502 ~L~l~~~-~i~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 579 (615)
.++++++ +++ .+|. +..+++|++|+|++ |++++..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 676 3566 78888888888885 888766667788888888888888888877777788888888888888
Q ss_pred ccceecCCCCCCCCCccCcccCCCcCccCCCC
Q 045619 580 NRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 611 (615)
Q Consensus 580 n~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 611 (615)
|++.+..|..+....++.|.+.+|+..|++.+
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCcc
Confidence 88875444444444578888888888887754
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.86 E-value=3.3e-07 Score=92.27 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=46.3
Q ss_pred hhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcC
Q 045619 495 RIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVT 570 (615)
Q Consensus 495 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 570 (615)
..|.+|+.+.+.++.++.+...+|.++.+|+++.|..+ ++.....+|.++++|+.+.+..+ ++.+...+|.++.
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 34566666666666666566667777777777777543 55445566777777777777543 4445555665553
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.84 E-value=4e-09 Score=105.02 Aligned_cols=87 Identities=26% Similarity=0.244 Sum_probs=79.8
Q ss_pred ccccceEeCCC-CccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeE
Q 045619 497 ITILTTIDLSS-NQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASL 575 (615)
Q Consensus 497 ~~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 575 (615)
+++|+.|+|++ |.+.+..+..|+.+++|++|+|++|++++..|..|..+++|++|+|++|++....+..|..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 56799999996 999988888999999999999999999988889999999999999999999987777777776 9999
Q ss_pred Eccccccee
Q 045619 576 NLSYNRLWG 584 (615)
Q Consensus 576 ~l~~n~i~~ 584 (615)
++++|++..
T Consensus 109 ~l~~N~~~c 117 (347)
T 2ifg_A 109 VLSGNPLHC 117 (347)
T ss_dssp ECCSSCCCC
T ss_pred EeeCCCccC
Confidence 999999874
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.78 E-value=4.6e-07 Score=91.25 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=71.5
Q ss_pred hhHHhhccccceEeCCCCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccccchhhhhhcC
Q 045619 491 VVLKRIITILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHGRILEQLLSVT 570 (615)
Q Consensus 491 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 570 (615)
..++..+..|+.+.+..+ +......+|.++++|+++.+.++.++.....+|..+++|+.+.|..+ ++.+...+|.++.
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 334555778888888654 55566778999999999999999888677889999999999999764 6667778999999
Q ss_pred cCCeEEcccc
Q 045619 571 ALASLNLSYN 580 (615)
Q Consensus 571 ~L~~L~l~~n 580 (615)
+|+.+.+..+
T Consensus 334 ~L~~i~ip~~ 343 (379)
T 4h09_A 334 ALSTISYPKS 343 (379)
T ss_dssp TCCCCCCCTT
T ss_pred CCCEEEECCc
Confidence 9999988654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=5.2e-09 Score=103.65 Aligned_cols=83 Identities=13% Similarity=0.191 Sum_probs=55.4
Q ss_pred ccccceEeCCCCccCccCCccc---cCCCCCcEEeCcCCcCccc----CCccccCCCCCCEEeCCCCcccccchhhhhh-
Q 045619 497 ITILTTIDLSSNQFQAEIPRVL---GDFKSLIVLNLSHNGLTGS----IPVSFANMTALESLDLSSNKLHGRILEQLLS- 568 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~~~~~l---~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~- 568 (615)
+++|+.|++.+|.+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 4667777777777664322222 2567888888888888753 3344456788999999988887655555544
Q ss_pred cCcCCeEEccccc
Q 045619 569 VTALASLNLSYNR 581 (615)
Q Consensus 569 l~~L~~L~l~~n~ 581 (615)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 3 3567777776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=3.8e-08 Score=97.38 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=101.4
Q ss_pred cCCCcccEEEcCCCcccCCCCcccCCCCCccEEEcCCCcCCccCccccC--CCCCCcEEEccCC--cccCcc-----CCC
Q 045619 354 NGSCSLRSLDLNSNKLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLG--CLPGLNILVLRSN--RFYGPL-----CES 424 (615)
Q Consensus 354 ~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~l~~~--~~~~~~-----~~~ 424 (615)
..+|+|+.|.+++|.-. ..+. +. +++|+.|++..|.+.......+. .+|+|+.|+++.+ ...... ...
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 34478899988877311 1222 33 78899999988887655444444 6889999988532 111110 001
Q ss_pred ccCCCCCcccEEEccCCcCcCCCchHHHhchhhhcccccCCCCCccccccccccccceeEEecCchhhHHhhccccceEe
Q 045619 425 NIMFPFQALRIIDLSHNEFTGFLPRWIFVSLEAMKNVDEKGSDGLYMQREEDYYQDSVTVTVKGRDVVLKRIITILTTID 504 (615)
Q Consensus 425 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 504 (615)
.....+++|+.|++.+|.+.+..+..++. . ..++.|++|+
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-a---------------------------------------~~~~~L~~Ld 285 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLE-S---------------------------------------DILPQLETMD 285 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHH-C---------------------------------------SSGGGCSEEE
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHh-C---------------------------------------ccCCCCCEEE
Confidence 11135789999999988876432221111 0 1257799999
Q ss_pred CCCCccCcc----CCccccCCCCCcEEeCcCCcCcccCCccccC-CCCCCEEeCCCCc
Q 045619 505 LSSNQFQAE----IPRVLGDFKSLIVLNLSHNGLTGSIPVSFAN-MTALESLDLSSNK 557 (615)
Q Consensus 505 l~~~~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~ 557 (615)
++.|.+.+. ++..+..+++|+.|+|++|.+++.....+.. + ...+++++++
T Consensus 286 Ls~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 999998864 2344467899999999999988544444443 2 3678898887
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=5.7e-08 Score=86.67 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=47.9
Q ss_pred cccceEeCCCCccCcc----CCccccCCCCCcEEeCcCCcCccc----CCccccCCCCCCEEeC--CCCcccccch----
Q 045619 498 TILTTIDLSSNQFQAE----IPRVLGDFKSLIVLNLSHNGLTGS----IPVSFANMTALESLDL--SSNKLHGRIL---- 563 (615)
Q Consensus 498 ~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l--~~n~~~~~~~---- 563 (615)
++|++|++++|++.+. +...+...++|++|+|++|.|++. +...+...++|++|+| ++|.+.....
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 4456666666665532 223344456666666666666532 2344555666666666 6666655332
Q ss_pred hhhhhcCcCCeEEcccccce
Q 045619 564 EQLLSVTALASLNLSYNRLW 583 (615)
Q Consensus 564 ~~~~~l~~L~~L~l~~n~i~ 583 (615)
..+...++|++|++++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 23334466777777666664
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=5.5e-08 Score=84.25 Aligned_cols=86 Identities=10% Similarity=0.036 Sum_probs=72.9
Q ss_pred cccceEeCCCCccCccCCccccCCCCCcEEeCcCCc-CcccCCccccCC----CCCCEEeCCCCc-ccccchhhhhhcCc
Q 045619 498 TILTTIDLSSNQFQAEIPRVLGDFKSLIVLNLSHNG-LTGSIPVSFANM----TALESLDLSSNK-LHGRILEQLLSVTA 571 (615)
Q Consensus 498 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~l~~ 571 (615)
..|+.||+++|.|++..-..+..+++|++|+|++|. +++..-..+..+ ++|++|+|++|. ++......+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 459999999999998777778999999999999995 876555556653 589999999995 88888888899999
Q ss_pred CCeEEcccccce
Q 045619 572 LASLNLSYNRLW 583 (615)
Q Consensus 572 L~~L~l~~n~i~ 583 (615)
|++|++++|+-.
T Consensus 141 L~~L~L~~c~~I 152 (176)
T 3e4g_A 141 LKYLFLSDLPGV 152 (176)
T ss_dssp CCEEEEESCTTC
T ss_pred CCEEECCCCCCC
Confidence 999999999743
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=1.3e-07 Score=84.29 Aligned_cols=118 Identities=8% Similarity=0.011 Sum_probs=69.7
Q ss_pred hhhcCCCCceeeCCCC-ccCCC----CchhhhcCCCCcEEecCCCcCcc-ccCcchhhccCCCCCCEEecccccCCCCCc
Q 045619 67 EFLRLKELTYLNLSYT-RFSGL----LPQEISHMSKLTHLDLFDCDMTI-EQKSFDLLASNLTKLSVLNLGWADRSLIEP 140 (615)
Q Consensus 67 ~l~~l~~L~~L~L~~~-~~~~~----~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 140 (615)
.+...+.|++|+|++| .+.+. +...+...++|++|+|++|.+.. ....+...+...++|++|++++|.+.....
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4566777888888887 66543 33444556778888888887752 222344555666777777777777665443
Q ss_pred hhhhcc---cccccEEEc--CCCCCccCCC----ccccCCCCCcEEEcccCCC
Q 045619 141 FSVLNL---SSTITVLDL--SGTGMRGNFP----REIFQLPHLQELHLSSNKY 184 (615)
Q Consensus 141 ~~~~~l---~~~L~~L~l--~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~ 184 (615)
..+... .+.|++|++ ++|.+.+... ..+...+.|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 333221 145677777 5666654322 2233446666666666643
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=4.3e-06 Score=78.26 Aligned_cols=79 Identities=25% Similarity=0.315 Sum_probs=48.6
Q ss_pred hccccceEeCCCCccCc--cCCccccCCCCCcEEeCcCCcCcccCCccccCCC--CCCEEeCCCCcccccch-------h
Q 045619 496 IITILTTIDLSSNQFQA--EIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMT--ALESLDLSSNKLHGRIL-------E 564 (615)
Q Consensus 496 ~~~~L~~L~l~~~~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~-------~ 564 (615)
.++.|++|++++|++.+ .++..+..+++|+.|+|++|++++. ..+..+. +|+.|+|++|.+.+..| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45677777777777765 2345556677777777777777643 2233333 67777777777665333 2
Q ss_pred hhhhcCcCCeEE
Q 045619 565 QLLSVTALASLN 576 (615)
Q Consensus 565 ~~~~l~~L~~L~ 576 (615)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 355667777654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=6.8e-07 Score=83.66 Aligned_cols=90 Identities=26% Similarity=0.288 Sum_probs=67.7
Q ss_pred ccccce--EeCCCCccCc---cCCccccCCCCCcEEeCcCCcCcc--cCCccccCCCCCCEEeCCCCcccccchhhhhhc
Q 045619 497 ITILTT--IDLSSNQFQA---EIPRVLGDFKSLIVLNLSHNGLTG--SIPVSFANMTALESLDLSSNKLHGRILEQLLSV 569 (615)
Q Consensus 497 ~~~L~~--L~l~~~~i~~---~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 569 (615)
.+.|+. ++++.|.... ..+....++++|++|+|++|++++ .+|..+..+++|+.|+|++|++.+. ..+..+
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l 217 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI 217 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence 344555 6677774431 112222578999999999999986 4457778899999999999999875 345555
Q ss_pred C--cCCeEEcccccceecCCC
Q 045619 570 T--ALASLNLSYNRLWGRIPR 588 (615)
Q Consensus 570 ~--~L~~L~l~~n~i~~~~p~ 588 (615)
. +|++|++++|++.+.+|.
T Consensus 218 ~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp TTSCCSEEECTTSTTGGGCSS
T ss_pred ccCCcceEEccCCcCccccCc
Confidence 5 999999999999987774
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=1.3e-06 Score=75.62 Aligned_cols=44 Identities=7% Similarity=0.156 Sum_probs=30.3
Q ss_pred CChhhhcCCCCceeeCCCCccCCCCchhhhcCCCCcEEecCCCc
Q 045619 64 ISPEFLRLKELTYLNLSYTRFSGLLPQEISHMSKLTHLDLFDCD 107 (615)
Q Consensus 64 l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 107 (615)
+|.....-..|+.||+++|.+++.....+.++++|++|+|++|.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 45433333468888888888776666667777888888888774
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=0.00016 Score=63.77 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=63.6
Q ss_pred ccccceEeCCCCccCcc----CCccccCCCCCcEEeCcCCcCccc----CCccccCCCCCCEEeCCCC---ccccc----
Q 045619 497 ITILTTIDLSSNQFQAE----IPRVLGDFKSLIVLNLSHNGLTGS----IPVSFANMTALESLDLSSN---KLHGR---- 561 (615)
Q Consensus 497 ~~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n---~~~~~---- 561 (615)
-..|+.|+|++|+|.+. +.+.+..-++|++|+|+.|.|++. +.+.+...+.|+.|+|++| .+...
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 35689999999999853 344556778999999999999753 3456677788999999865 34432
Q ss_pred chhhhhhcCcCCeEEcccccce
Q 045619 562 ILEQLLSVTALASLNLSYNRLW 583 (615)
Q Consensus 562 ~~~~~~~l~~L~~L~l~~n~i~ 583 (615)
+.+.+..-+.|+.|+++.|.+.
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhCCCcCeEeccCCCcc
Confidence 3345555688999999877654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.01 E-value=0.00025 Score=62.58 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=52.8
Q ss_pred hcCCCCceeeCCCC-ccCCC----CchhhhcCCCCcEEecCCCcCc-cccCcchhhccCCCCCCEEecccccCCCCCchh
Q 045619 69 LRLKELTYLNLSYT-RFSGL----LPQEISHMSKLTHLDLFDCDMT-IEQKSFDLLASNLTKLSVLNLGWADRSLIEPFS 142 (615)
Q Consensus 69 ~~l~~L~~L~L~~~-~~~~~----~~~~l~~l~~L~~L~L~~~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 142 (615)
.+-+.|+.|+|+++ .+.+. +.+++..-..|++|+|++|++. .....+...+..-+.|++|+|++|.+.......
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44566777888774 55432 3344455567777777777776 333455556666667777777777666554443
Q ss_pred hhcc---cccccEEEcCCC
Q 045619 143 VLNL---SSTITVLDLSGT 158 (615)
Q Consensus 143 ~~~l---~~~L~~L~l~~~ 158 (615)
+... ...|++|+++++
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 3322 134555555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.89 E-value=0.0015 Score=53.76 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=44.5
Q ss_pred ceEeCCCCccC-ccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 045619 501 TTIDLSSNQFQ-AEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSNKLHG 560 (615)
Q Consensus 501 ~~L~l~~~~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 560 (615)
..++.++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888888886 24554332 468999999999986666778889999999999998754
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.05 E-value=0.013 Score=47.99 Aligned_cols=56 Identities=27% Similarity=0.347 Sum_probs=40.2
Q ss_pred EEeCcCCcCc-ccCCccccCCCCCCEEeCCCCcccccchhhhhhcCcCCeEEcccccce
Q 045619 526 VLNLSHNGLT-GSIPVSFANMTALESLDLSSNKLHGRILEQLLSVTALASLNLSYNRLW 583 (615)
Q Consensus 526 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~ 583 (615)
.++.++++++ ..+|..+. ++|+.|+|++|+++.+.+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6777777775 34554432 46788888888887777777778888888888888775
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=76.87 E-value=4.3 Score=30.94 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=33.9
Q ss_pred CCccCccCCccccCCCCCcEEeCcCCcCcccCCccccCCCCCCEEeCCCC
Q 045619 507 SNQFQAEIPRVLGDFKSLIVLNLSHNGLTGSIPVSFANMTALESLDLSSN 556 (615)
Q Consensus 507 ~~~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 556 (615)
+..++.+...+|.++++|+++.|-.+ ++.+...+|..+.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34455566677778888888887765 55455677777888888777654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.89 E-value=5.8 Score=30.18 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=31.7
Q ss_pred cccCCCCcccCCCCCccEEEcCCCcCCccCccccCCCCCCcEEEccCC
Q 045619 368 KLEGPFPRYLADCDELEVVNVGNNMIGDTFPSWLGCLPGLNILVLRSN 415 (615)
Q Consensus 368 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 415 (615)
.++.+...+|.+|.+|+.+.|-.+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344455567777777777777654 44666677777777777777653
Done!