BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045621
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX
PE=1 SV=1
Length = 288
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 33/135 (24%)
Query: 79 KVAIIQLC----------LFHKDRMPQSLVDFLDNDKFTFVG------------------ 110
KVA +Q+C +FH +PQSL +++ VG
Sbjct: 148 KVATVQICVDSNYCDVMHIFHSG-IPQSLQHLIEDSTLVKVGIGIDGDSVKLFHDYGVSI 206
Query: 111 --TMDVADMAAAKYDDEELKTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYA 168
D++D+A K + K +GL L + E+ K RI L W+ LSKQQ++YA
Sbjct: 207 KDVEDLSDLANQKIGGD--KKWGLASLTETLVCKELLKPNRIRLGNWEFYPLSKQQLQYA 264
Query: 169 AIDAFVSFKLAIELK 183
A DA+ S+ L LK
Sbjct: 265 ATDAYASWHLYKVLK 279
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 53/132 (40%), Gaps = 32/132 (24%)
Query: 75 NKLQKVAIIQLC-------LFHKDRM---PQSLVDFLDNDKFTFVGT------------- 111
KL KVA+IQLC LFH M PQ L L+N G
Sbjct: 92 GKLGKVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAGVGIEGDQWKLLRDF 151
Query: 112 -------MDVADMAAAKYDDEELKTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQ 164
+++ D+A K E T+ L LV L ++ K K I S W L++ Q
Sbjct: 152 DIKLKNFVELTDVANKKLKCTE--TWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQ 209
Query: 165 IRYAAIDAFVSF 176
YAA DA+ F
Sbjct: 210 KLYAATDAYAGF 221
>sp|B4M401|WRNXO_DROVI Werner Syndrome-like exonuclease OS=Drosophila virilis GN=WRNexo
PE=3 SV=2
Length = 330
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 33/130 (25%)
Query: 79 KVAIIQLCLFHK----------DRMPQSLVDFLDNDKFTFVGTMDVADMAAAKYD----- 123
K ++IQ+C+ + R+P +LV L++ K G AD + D
Sbjct: 152 KSSVIQICVEERCCYVYQLSKLKRIPAALVALLNHSKVRLHGVNIKADFRKLERDFPEVA 211
Query: 124 ---------------DEELKTFG---LKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQI 165
+E +T G L+RL M+KSK++ +SKW V L + Q+
Sbjct: 212 AEPLIEKCIDLGVWCNEVCETGGRWSLERLANFIAKKAMDKSKKVRMSKWHVIPLDENQL 271
Query: 166 RYAAIDAFVS 175
YAAID ++
Sbjct: 272 MYAAIDVYIG 281
>sp|Q8VEG4|EXD2_MOUSE Exonuclease 3'-5' domain-containing protein 2 OS=Mus musculus
GN=Exd2 PE=2 SV=1
Length = 496
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 110 GTMDVADMAAAKYDDEELKTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAA 169
G +D+ +A + ++ LK L L+ ++KS + S WD NL++ Q+ YAA
Sbjct: 60 GCLDLRYLAMKQGNNILCNGLSLKSLAETILNFPLDKSLLLRCSNWDAENLTEDQVTYAA 119
Query: 170 IDAFVSFKLAIEL 182
DA +S L + L
Sbjct: 120 RDAQISVALFLHL 132
>sp|B4G5C9|WRNXO_DROPE Werner Syndrome-like exonuclease OS=Drosophila persimilis GN=WRNexo
PE=3 SV=2
Length = 355
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 33/130 (25%)
Query: 79 KVAIIQLCLFHK----------DRMPQSLVDFLDNDKFTFVGTMDVADMAAAKYD----- 123
K ++IQ+C+ K ++P +LV +++ K G AD + D
Sbjct: 177 KSSVIQICVDEKCCYVYQLTNLKKLPAALVALINHPKVRLHGVNIKADFRKLQRDFPEVS 236
Query: 124 ---------------DEELKTFG---LKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQI 165
+E +T G L+RL M+KSK++ +SKW V L + Q+
Sbjct: 237 ADALIEKCVDLGVWCNEICETGGRWSLERLANFIAKKAMDKSKKVRMSKWHVIPLDENQL 296
Query: 166 RYAAIDAFVS 175
YAAID ++
Sbjct: 297 MYAAIDVYIG 306
>sp|Q299L3|WRNXO_DROPS Werner Syndrome-like exonuclease OS=Drosophila pseudoobscura
pseudoobscura GN=WRNexo PE=3 SV=2
Length = 356
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 33/130 (25%)
Query: 79 KVAIIQLCLFHK----------DRMPQSLVDFLDNDKFTFVGTMDVADMAAAKYD----- 123
K ++IQ+C+ K ++P +LV +++ K G AD + D
Sbjct: 178 KSSVIQICVDEKCCYVYQLTNLKKLPAALVALINHPKVRLHGVNIKADFRKLQRDFPEVS 237
Query: 124 ---------------DEELKTFG---LKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQI 165
+E +T G L+RL M+KSK++ +SKW V L + Q+
Sbjct: 238 ADALIEKCVDLGVWCNEICETGGRWSLERLANFIAKKAMDKSKKVRMSKWHVIPLDENQL 297
Query: 166 RYAAIDAFVS 175
YAAID ++
Sbjct: 298 MYAAIDVYIG 307
>sp|B3LWP6|WRNXO_DROAN Werner Syndrome-like exonuclease OS=Drosophila ananassae GN=WRNexo
PE=3 SV=2
Length = 355
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 33/130 (25%)
Query: 79 KVAIIQLCLFHK----------DRMPQSLVDFLDNDKFTFVGTMDVADMAAAKYDDEEL- 127
K ++IQ+C+ K ++P +LV +++ K G AD + D E+
Sbjct: 177 KSSVIQICVDEKCCYIYQLTNLKKLPSALVALINHPKVRLHGVNIKADFRKLQRDFPEVS 236
Query: 128 -------------------KTFG---LKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQI 165
+T G L+RL M+KSK++ +SKW V L + Q+
Sbjct: 237 ADALIEKCVDLGVWCNVICQTGGRWSLERLANFICRKAMDKSKKVRMSKWHVIPLDENQL 296
Query: 166 RYAAIDAFVS 175
YAAID ++
Sbjct: 297 MYAAIDVYIG 306
>sp|Q9VE86|WRNXO_DROME Werner Syndrome-like exonuclease OS=Drosophila melanogaster
GN=WRNexo PE=1 SV=2
Length = 353
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 33/139 (23%)
Query: 79 KVAIIQLCLFHK----------DRMPQSLVDFLDNDKFTFVG----------TMDVADMA 118
K A+IQ+C+ K ++P +LV +++ K G D ++
Sbjct: 175 KSAVIQICVDEKCCYIYQLTNVKKLPAALVALINHPKVRLHGVNIKNDFRKLARDFPEVT 234
Query: 119 AAK----------YDDEELKTFG---LKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQI 165
A + +E +T G L+RL M+KSK++ +SKW V L + Q+
Sbjct: 235 AEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMDKSKKVRMSKWHVIPLDENQL 294
Query: 166 RYAAIDAFVSFKLAIELKK 184
YAAID ++ + EL++
Sbjct: 295 MYAAIDVYIGQVIYRELER 313
>sp|B4N9D3|WRNXO_DROWI Werner Syndrome-like exonuclease OS=Drosophila willistoni GN=WRNexo
PE=3 SV=2
Length = 356
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 33/130 (25%)
Query: 79 KVAIIQLCLFHK----------DRMPQSLVDFLDNDKFTFVGTMDVADMAAAKYD----- 123
K ++IQ+C+ + ++P +LV L++ K G AD + D
Sbjct: 178 KSSVIQVCVDERCCYVYQLSKLKKLPAALVALLNHPKVRLHGVNIKADFRKLQRDFPEVS 237
Query: 124 ---------------DEELKTFG---LKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQI 165
+E +T G L+RL M+KSK++ +SKW V L + Q+
Sbjct: 238 ADPLIEKCVDLGVWCNEICETGGRWSLERLANFIAKKAMDKSKKVRMSKWHVIPLDENQL 297
Query: 166 RYAAIDAFVS 175
YAAID ++
Sbjct: 298 MYAAIDVYIG 307
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 28/130 (21%)
Query: 75 NKLQKVAIIQLC-------LFHKDRM---PQSLVDFLDN------------DKFTFVGTM 112
K +VA+IQLC LFH M PQ L L+N D++ +
Sbjct: 86 GKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDF 145
Query: 113 DVADMAAAKYDD---EELK---TFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIR 166
DV + + D E+LK T+ L LV L ++ K K I S W L++ Q
Sbjct: 146 DVKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKL 205
Query: 167 YAAIDAFVSF 176
YAA DA+
Sbjct: 206 YAATDAYAGL 215
>sp|B3NZ68|WRNXO_DROER Werner Syndrome-like exonuclease OS=Drosophila erecta GN=WRNexo
PE=3 SV=1
Length = 354
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 33/139 (23%)
Query: 79 KVAIIQLCLFHK----------DRMPQSLVDFLDNDKFTFVG----------TMDVADMA 118
K A+IQ+C+ K ++P LV +++ K G D +++
Sbjct: 176 KSAVIQICVDEKCCYIYQLTNLKKLPAVLVALINHSKVRLHGVNIKNDFRKLARDFPEVS 235
Query: 119 AAK----------YDDEELKTFG---LKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQI 165
A + +E +T G L+RL M+KSK++ +SKW V L + Q+
Sbjct: 236 AEPLIEKCVDLGVWCNEVCETGGRWSLERLTNFIAKKAMDKSKKVRMSKWHVIPLDENQL 295
Query: 166 RYAAIDAFVSFKLAIELKK 184
YAAID ++ + EL++
Sbjct: 296 MYAAIDVYIGQVIYRELER 314
>sp|B4K934|WRNXO_DROMO Werner Syndrome-like exonuclease OS=Drosophila mojavensis GN=WRNexo
PE=3 SV=1
Length = 329
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 33/130 (25%)
Query: 79 KVAIIQLCLFHK----------DRMPQSLVDFLDNDKFTFVGTMDVADMAAAKYD----- 123
K ++IQ+C+ + ++P +LV +++ K G AD D
Sbjct: 151 KSSVIQICVDERCCYVYQLSNLKKIPAALVALINHPKVRLHGVNIKADFRKLARDFPEVA 210
Query: 124 ---------------DEELKTFG---LKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQI 165
+E +T G L+RL M+KSK++ +SKW V L + Q+
Sbjct: 211 AEPLIEKCVDLGVWCNEVCETGGRWSLERLANFIAKKAMDKSKKVRMSKWHVIPLDENQL 270
Query: 166 RYAAIDAFVS 175
YAAID ++
Sbjct: 271 MYAAIDVYIG 280
>sp|B4PLB3|WRNXO_DROYA Werner Syndrome-like exonuclease OS=Drosophila yakuba GN=WRNexo
PE=3 SV=1
Length = 354
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 33/139 (23%)
Query: 79 KVAIIQLCLFHK----------DRMPQSLVDFLDNDKFTFVG----------TMDVADMA 118
K A+IQ+C+ K ++P LV +++ K G D +++
Sbjct: 176 KSAVIQICVDEKCCYIYQLTNLKKLPAVLVALINHPKVRLHGVNIKNDFRKLARDFPEVS 235
Query: 119 AAK----------YDDEELKTFG---LKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQI 165
A + +E +T G L+RL M+KSK++ +SKW V L + Q+
Sbjct: 236 AEPLIEKCVDLGLWCNEVCETGGRWSLERLTNFIAKKAMDKSKKVRMSKWHVIPLDENQL 295
Query: 166 RYAAIDAFVSFKLAIELKK 184
YAAID ++ + EL++
Sbjct: 296 MYAAIDVYIGQVIYRELER 314
>sp|B4I298|WRNXO_DROSE Werner Syndrome-like exonuclease OS=Drosophila sechellia GN=WRNexo
PE=3 SV=2
Length = 354
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 130 FGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKK 184
+ L+RL M+KSK++ +SKW V L + Q+ YAAID ++ + EL++
Sbjct: 260 WSLERLTNFIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELER 314
>sp|Q9NVH0|EXD2_HUMAN Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens
GN=EXD2 PE=1 SV=2
Length = 621
Score = 38.9 bits (89), Expect = 0.027, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 110 GTMDVADMAAAKYDDEELKTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAA 169
G +D+ +A + ++ LK L L+ ++KS + S WD L++ Q+ YAA
Sbjct: 185 GCLDLRYLAMRQRNNLLCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAA 244
Query: 170 IDAFVSFKLAIEL 182
DA +S L + L
Sbjct: 245 RDAQISVALFLHL 257
>sp|B4QUF6|WRNXO_DROSI Werner Syndrome-like exonuclease OS=Drosophila simulans GN=WRNexo
PE=3 SV=1
Length = 354
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 130 FGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKK 184
+ L+RL M+KSK++ +SKW V L + Q+ YAAID ++ + EL++
Sbjct: 260 WSLERLTNFIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYRELER 314
>sp|B4JF25|WRNXO_DROGR Werner Syndrome-like exonuclease OS=Drosophila grimshawi GN=WRNexo
PE=3 SV=1
Length = 331
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 42/196 (21%)
Query: 42 YFVTT--VTSRASDVDRWIARTINVHRRRLHRLI------TNKLQKVAIIQLCLFHK--- 90
YF + + + A +V +W+ + IN+ + + K ++IQ+C+ +
Sbjct: 108 YFTESQEIAASADEVMQWVEKQINMDVVPMAFDMEWPFSFQTGPGKSSVIQICVDERCCY 167
Query: 91 -------DRMPQSLVDFLDNDKFTFVGTMDVADMAAAKYDDEELKT-------------- 129
+++P +L +++ K G AD + D E+
Sbjct: 168 VYQLSKLNKIPAALAALINHPKVRLHGVNIKADFRKLERDFPEMSAEPLIEKCVDLGVWC 227
Query: 130 ---------FGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAI 180
+ L+RL M+KSK++ +SKW V L + Q+ YAAID ++ +
Sbjct: 228 NQVCETGGRWSLERLANFIAKKAMDKSKKVRMSKWHVIPLDENQLMYAAIDVYIGQVIYR 287
Query: 181 EL-KKEIIALPKPTTF 195
E+ ++E + L F
Sbjct: 288 EIEQRETVKLKNEAEF 303
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 32/132 (24%)
Query: 75 NKLQKVAIIQLC-------LFHKDRM---PQSLVDFLDNDKFTFVGT------------- 111
K KVA+IQ+C LFH M P+ L L+++ VG
Sbjct: 86 GKTGKVALIQVCVSEKKCYLFHISPMAGFPKGLKRLLEDESVRKVGVGIEGDQWKLMSDY 145
Query: 112 -------MDVADMAAAKYDDEELKTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQ 164
+++++MA K +E TF L+ ++ K K S WD+ L++ Q
Sbjct: 146 ELKLKGFIELSEMANQKLRCKEKWTF--NGLIKHLFKEQLYKRKSYRCSNWDIFLLTEDQ 203
Query: 165 IRYAAIDAFVSF 176
YAA DA+
Sbjct: 204 KLYAATDAYAGL 215
>sp|P34607|MUT7_CAEEL Probable exonuclease mut-7 OS=Caenorhabditis elegans GN=mut-7 PE=1
SV=1
Length = 910
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 128 KTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKKEII 187
KTF L L L +E++K+++ S W L K+QI YAA+DA V +E K+I+
Sbjct: 548 KTFKLADLTHYLLGLELDKTEQC--SNWQCRPLRKKQIVYAALDAVV----VVETFKKIL 601
Query: 188 ALPKPTTFDA 197
++ + DA
Sbjct: 602 SIVEEKNKDA 611
>sp|C6C608|RND_DICDC Ribonuclease D OS=Dickeya dadantii (strain Ech703) GN=rnd PE=3 SV=2
Length = 374
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 129 TFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKKE 185
++G LV ++ V ++KS+ T W LS++Q +YAA D + +AI L +E
Sbjct: 115 SYGFAALVADYMQVTLDKSESRT--DWLARPLSEKQCQYAAADVYYLLPMAIRLVEE 169
>sp|Q5UQM4|YR431_MIMIV Putative 3'-5' exonuclease R431 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R431 PE=4 SV=1
Length = 399
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 43/202 (21%)
Query: 47 VTSRASDVDRWIARTINVHRRRL-----HRLITNKLQKVAIIQLC---------LFHKDR 92
VTS VD WI I ++ + LI+ K +K++IIQL + +
Sbjct: 114 VTSDFQIVDNWIENNIYDLKQEIIGLDTETLISGKSEKISIIQLSTSKHNIIIQVNQMNT 173
Query: 93 MPQSLVDFLDNDKFTFVG----------------------TMDVADMAAAKYDDEEL--- 127
+PQ+L ++ VG T+D++D+ + +
Sbjct: 174 LPQNLNKVFFDESIIKVGVAIDIDAKKLLQYFPTINQIKKTLDLSDLFKQTNFTKHISIN 233
Query: 128 --KTFGLKRLVLKFL--HVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELK 183
++ GLK L L ++E + I S W+ L+ Q++YA D+++S + EL+
Sbjct: 234 PKESIGLKILAAHVLDLYIENKGDSEIKKSNWNNPVLTSDQVKYAITDSYLSLMIYNELQ 293
Query: 184 KEIIALPKPTTFDAFCCFQISS 205
L FC SS
Sbjct: 294 LMTNNLDVKNLLKNFCHIDESS 315
>sp|Q8N9H8|MUT7_HUMAN Probable exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=1
SV=3
Length = 876
Score = 35.8 bits (81), Expect = 0.20, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 112 MDVADMAAAKYDD-EELKTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAI 170
M VA + A D EL+ GL LV + L ++K+++ LS WD L ++Q+ YAA
Sbjct: 499 MRVASVPAPAVDRARELR--GLSLLVQQVLGTALDKTQQ--LSNWDRRPLCEEQVIYAAA 554
Query: 171 DAFVSFKLAIELKKE 185
DA+ ++ L +E
Sbjct: 555 DAYCLLEVHQALCRE 569
>sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnd PE=3 SV=1
Length = 399
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 19/100 (19%)
Query: 91 DRMPQSLVDFLDNDKFTFVGTMDVADMAAAKYDDEELKTFGLKRLVLKFLHVEMEKSKRI 150
D++P+ ++D +F +GT + GL +L ++L+VE++K
Sbjct: 121 DQLPRPMIDTQIMARFLGLGT-----------------SAGLAKLAQQYLNVEIDKGA-- 161
Query: 151 TLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKKEIIALP 190
T + W LS Q++YAA D + L L+KE+ P
Sbjct: 162 TRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTP 201
>sp|Q179T2|MUT7_AEDAE Probable exonuclease mut-7 homolog OS=Aedes aegypti GN=AAEL005527
PE=3 SV=1
Length = 719
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 125 EELKTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKK 184
EE L LV L +++KS + S W L K+Q+RYAA+DAF ++ ++K
Sbjct: 569 EESVNQNLANLVRLCLGKKLDKSNQ--FSNWAQRPLRKEQLRYAALDAFCLLEIYDAIEK 626
Query: 185 EI 186
++
Sbjct: 627 QL 628
>sp|A8GFH0|RND_SERP5 Ribonuclease D OS=Serratia proteamaculans (strain 568) GN=rnd PE=3
SV=2
Length = 373
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 131 GLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKKE 185
G LV +++ VE++KS+ T W L+++Q YAA D F +A L +E
Sbjct: 117 GFATLVAEYMEVELDKSEART--DWLARPLTEKQCVYAAADVFYLLPMAKRLVQE 169
>sp|B5YEP5|SYE_DICT6 Glutamate--tRNA ligase OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=gltX PE=3 SV=1
Length = 477
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 100 FLDNDKFTFVGTMDVADMAAAKYDDEELKTFGLKRLVLKFLHVEMEKSKRITLSKWDVNN 159
F ++K TF+ ++ D+A + + EE GLK L L + +++R+ L + +
Sbjct: 30 FARHNKGTFILRIEDTDLARSTKEYEENIIEGLKWLGLYWDEGPYYQTQRLDLYRKYADE 89
Query: 160 LSKQQIRYAAIDAFVSFKLAIELKKEIIALPKPTTFDAFCCF 201
L K+ + Y + + + E +KE +A KP +D C +
Sbjct: 90 LLKKGLAYY---CYCTPEELEERRKEALAQKKPPRYDRKCLY 128
>sp|O15303|GRM6_HUMAN Metabotropic glutamate receptor 6 OS=Homo sapiens GN=GRM6 PE=1 SV=2
Length = 877
Score = 30.8 bits (68), Expect = 6.1, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 1 MAVEALTLSPKPAEIKPL-AYNSSSSIEPLGHNIWGINFGEDYFVTTVTSRASDVD 55
+AV A+T+ PK A I Y + S+E NIW F E+ F +TS + D
Sbjct: 322 VAVGAITILPKRASIDGFDQYFMTRSLENNRRNIWFAEFWEENFNCKLTSSGTQSD 377
>sp|Q863I4|GRM6_RABIT Metabotropic glutamate receptor 6 OS=Oryctolagus cuniculus GN=GRM6
PE=2 SV=1
Length = 868
Score = 30.0 bits (66), Expect = 9.9, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 1 MAVEALTLSPKPAEIKPL-AYNSSSSIEPLGHNIWGINFGEDYFVTTVTSRASDVD 55
+AV A+T+ PK A I Y + S+E NIW F E+ F +TS D
Sbjct: 313 VAVGAITILPKRASIDGFDQYFMTRSLENNRRNIWFAEFWEENFNCKLTSSGGQSD 368
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,907,051
Number of Sequences: 539616
Number of extensions: 2616627
Number of successful extensions: 8697
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8671
Number of HSP's gapped (non-prelim): 35
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)