Query 045621
Match_columns 205
No_of_seqs 151 out of 1110
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:13:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk0_A Hypothetical protein; h 99.9 2.3E-27 7.8E-32 198.4 11.9 105 78-184 71-205 (206)
2 2e6m_A Werner syndrome ATP-dep 99.8 3.7E-20 1.3E-24 152.7 13.4 155 28-188 3-197 (208)
3 3saf_A Exosome component 10; e 99.7 5.5E-18 1.9E-22 155.2 11.2 136 37-185 104-276 (428)
4 2hbj_A Exosome complex exonucl 99.7 9.8E-17 3.3E-21 146.0 12.5 161 14-189 60-257 (410)
5 1yt3_A Ribonuclease D, RNAse D 99.6 2.3E-15 8E-20 134.8 14.1 130 49-188 7-172 (375)
6 3cym_A Uncharacterized protein 99.4 1.3E-12 4.4E-17 119.8 14.7 124 50-185 23-186 (440)
7 2kfn_A Klenow fragment of DNA 98.6 7.7E-07 2.6E-11 84.2 15.5 126 50-185 12-192 (605)
8 3pv8_A DNA polymerase I; DNA p 98.4 8.8E-07 3E-11 83.9 8.8 108 76-187 44-182 (592)
9 1x9m_A DNA polymerase; DNA plo 96.9 0.00069 2.4E-08 65.1 5.1 111 76-189 14-186 (698)
10 4dfk_A DNA polymerase I, therm 91.5 0.21 7.1E-06 46.6 5.3 84 76-186 25-128 (540)
11 1wlj_A Interferon stimulated g 91.4 0.89 3E-05 35.8 8.3 51 128-193 126-176 (189)
12 2p1j_A POLIII, DNA polymerase 80.7 4.8 0.00017 31.3 7.0 21 165-185 155-175 (186)
13 3mxm_B Three prime repair exon 80.0 2.4 8.4E-05 34.9 5.2 40 128-185 175-214 (242)
14 1w0h_A 3'-5' exonuclease ERI1; 77.6 6.8 0.00023 30.6 7.0 59 111-189 139-198 (204)
15 1y97_A Three prime repair exon 77.4 8.2 0.00028 31.0 7.6 40 128-185 170-209 (238)
16 3v9w_A Ribonuclease T; DEDD nu 75.5 4.1 0.00014 32.9 5.2 24 164-187 199-222 (235)
17 1uoc_A POP2; hydrolase, DEDD n 73.7 3 0.0001 35.9 4.1 77 91-185 177-264 (289)
18 4gmj_B CCR4-NOT transcription 68.5 3.3 0.00011 35.5 3.2 72 91-185 172-244 (285)
19 1zbh_A 3'-5' exonuclease ERI1; 66.1 17 0.0006 30.5 7.3 30 166-195 243-272 (299)
20 2d5r_A CCR4-NOT transcription 64.6 4.9 0.00017 33.8 3.5 72 91-185 162-234 (252)
21 3u3y_B Three prime repair exon 64.6 18 0.00061 31.3 7.1 40 128-185 175-214 (314)
22 2p51_A SPCC18.06C protein; DED 62.2 5.1 0.00017 35.2 3.2 73 91-186 183-256 (333)
23 1zbu_A ERI-1 homolog, 3'-5' ex 61.8 23 0.00077 30.8 7.4 30 166-195 293-322 (349)
24 2gui_A DNA polymerase III epsi 61.0 17 0.00059 28.0 5.9 23 166-188 165-187 (194)
25 2f96_A Ribonuclease T; RNAse, 58.4 30 0.001 27.4 7.1 25 165-189 192-216 (224)
26 2gbz_A Oligoribonuclease; ORN, 58.0 20 0.00067 28.0 5.8 85 95-192 90-187 (194)
27 3ikm_A DNA polymerase subunit 51.7 11 0.00038 38.1 3.9 65 131-195 288-357 (1172)
28 2igi_A Oligoribonuclease; RNAs 49.8 53 0.0018 24.8 7.0 78 95-185 86-176 (180)
29 1noy_A Protein (DNA polymerase 44.3 17 0.00058 31.9 3.6 67 112-182 268-335 (388)
30 3cg7_A CRN-4, cell death-relat 39.0 36 0.0012 28.8 4.8 58 112-187 149-210 (308)
31 2xri_A ERI1 exoribonuclease 3; 38.3 98 0.0033 24.4 7.1 24 166-189 194-217 (224)
32 1qht_A Protein (DNA polymerase 29.3 68 0.0023 30.8 5.4 68 112-183 258-327 (775)
33 3rcp_A Pleckstrin homology dom 28.8 1.3E+02 0.0044 19.9 5.9 34 31-64 58-91 (103)
34 2cof_A Protein KIAA1914; PH do 26.4 1.4E+02 0.0047 20.2 5.4 33 32-64 67-99 (107)
35 2a1r_A Poly(A)-specific ribonu 26.0 94 0.0032 27.7 5.4 73 112-186 323-397 (430)
36 1wgq_A FYVE, rhogef and PH dom 23.5 1.7E+02 0.0057 19.6 5.4 33 32-64 69-101 (109)
37 3hlx_A Pyrroloquinoline-quinon 22.9 44 0.0015 27.9 2.5 44 154-197 32-76 (258)
38 1v5m_A SH2 and PH domain-conta 22.6 82 0.0028 24.0 3.7 38 28-65 92-129 (136)
39 2i5f_A Pleckstrin; PH domain, 22.6 1.5E+02 0.0052 19.6 5.0 34 30-63 73-106 (109)
40 3aj4_A Pleckstrin homology dom 21.6 1.7E+02 0.0056 19.7 5.1 33 32-64 77-109 (112)
41 2qxf_A Exodeoxyribonuclease I; 21.1 1E+02 0.0035 27.9 4.8 21 166-186 181-201 (482)
42 1x1g_A Pleckstrin 2; PH domain 21.0 1.3E+02 0.0045 20.8 4.5 34 31-64 89-122 (129)
No 1
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.94 E-value=2.3e-27 Score=198.37 Aligned_cols=105 Identities=20% Similarity=0.341 Sum_probs=96.3
Q ss_pred CceeeEEEE------EEee-CCCCHH---HHHhhcCCCeeEEEe--------------------eeHHHHHHHhcCCcch
Q 045621 78 QKVAIIQLC------LFHK-DRMPQS---LVDFLDNDKFTFVGT--------------------MDVADMAAAKYDDEEL 127 (205)
Q Consensus 78 ~~vaLiQLc------L~~~-~~~p~~---L~~fL~d~~i~kvGv--------------------~Dl~~la~~~lg~~~~ 127 (205)
+++|||||| |||+ +.+|.. |++||+||+|+|||| +|++.+|+..+|.+..
T Consensus 71 ~~~~LiQla~~~~~~l~~l~~~~~~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~ 150 (206)
T 1vk0_A 71 WSLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVL 150 (206)
T ss_dssp CEEEEEEEECSSEEEEEECCSSCCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGG
T ss_pred CceEEEEEecCCCeEEEeccccCCccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCC
Confidence 489999999 7787 668877 789999999999999 9999998878887545
Q ss_pred hcccHHHHHHHHcCcccccCCcccccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHH
Q 045621 128 KTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKK 184 (205)
Q Consensus 128 ~~~gL~~Lv~~~lg~~l~K~~~v~~SnW~~rpLs~~Qi~YAA~DA~~~~~I~~~L~~ 184 (205)
.+.||++||+++||+.| |++++++|||++ |||++|++|||.|||++++||++|.+
T Consensus 151 ~~~gL~~Lv~~~lg~~l-K~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 151 EFLGTRELAHRVLWSDL-GQLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp GGCCHHHHHHHHHCCCC-HHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHhCCcC-CCCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 79999999999999999 888888999999 99999999999999999999999975
No 2
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.83 E-value=3.7e-20 Score=152.66 Aligned_cols=155 Identities=28% Similarity=0.322 Sum_probs=117.3
Q ss_pred CCCCceeEEEeCCcEEEEEEcCCHHHHHHHHHHHHHhhhccccceee-----c-----cCCceeeEEEE-------EEee
Q 045621 28 PLGHNIWGINFGEDYFVTTVTSRASDVDRWIARTINVHRRRLHRLIT-----N-----KLQKVAIIQLC-------LFHK 90 (205)
Q Consensus 28 ~~~~~~y~V~f~g~~I~vtvT~~~~~v~~wi~~~~~~~~~~~~~lvv-----~-----~~~~vaLiQLc-------L~~~ 90 (205)
+...+.+.+.|.|..+. ..+++.+...+.++....... ..+.+ + ..+++++|||| ++++
T Consensus 3 ~~~~~lp~~~f~g~i~~---i~~~~~~~~~~~~~~~~l~~~-~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~ 78 (208)
T 2e6m_A 3 VLEDNLPFLEFPGSIVY---SYEASDCSFLSEDISMRLSDG-DVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHI 78 (208)
T ss_dssp ----CCCBCCCCSEEEE---ECSHHHHHHHHHHHHHHCCTT-CEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECG
T ss_pred chhccCCccccCCcEEE---EeCHHHHHHHHHHHHHHhccC-CEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEEC
Confidence 44566777888887543 357887876555554432222 11222 1 25689999999 4543
Q ss_pred ---CCCCHHHHHhhcCCCeeEEEe--------------------eeHHHHHHHhcCCcchhcccHHHHHHHHcCcccccC
Q 045621 91 ---DRMPQSLVDFLDNDKFTFVGT--------------------MDVADMAAAKYDDEELKTFGLKRLVLKFLHVEMEKS 147 (205)
Q Consensus 91 ---~~~p~~L~~fL~d~~i~kvGv--------------------~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l~K~ 147 (205)
+.+|..|+.+|+|++|+|||+ +|+..+|...++.. .+.||+.|++++||..+.|+
T Consensus 79 ~~~~~~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~--~~~~L~~L~~~~l~~~~~K~ 156 (208)
T 2e6m_A 79 SSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCA--ETWSLNGLVKHVLGKQLLKD 156 (208)
T ss_dssp GGCSSCCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCC--CCCCHHHHHHHHHSCBCCCC
T ss_pred cccccchHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCC--CChhHHHHHHHHcCCCcCCC
Confidence 457889999999999999998 89888887777642 58899999999999999887
Q ss_pred CcccccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhHHc
Q 045621 148 KRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKKEIIA 188 (205)
Q Consensus 148 ~~v~~SnW~~rpLs~~Qi~YAA~DA~~~~~I~~~L~~~~~~ 188 (205)
++.++|||+.+||+++|+.|||.||++++.+|..|.++...
T Consensus 157 k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~ 197 (208)
T 2e6m_A 157 KSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDT 197 (208)
T ss_dssp HHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 77789999999999999999999999999999999877433
No 3
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.74 E-value=5.5e-18 Score=155.17 Aligned_cols=136 Identities=15% Similarity=0.192 Sum_probs=108.8
Q ss_pred EeCCcEEEEEEcCCHHHHHHHHHHHHHhhhccccceee--------ccCCceeeEEEE------EEeeCC---CCHHHHH
Q 045621 37 NFGEDYFVTTVTSRASDVDRWIARTINVHRRRLHRLIT--------NKLQKVAIIQLC------LFHKDR---MPQSLVD 99 (205)
Q Consensus 37 ~f~g~~I~vtvT~~~~~v~~wi~~~~~~~~~~~~~lvv--------~~~~~vaLiQLc------L~~~~~---~p~~L~~ 99 (205)
++++..+. +..+++.+.+|+..+... ..+.+ +..+++++|||| +|+.-. ....|+.
T Consensus 104 p~~~~~y~--~I~t~e~L~~~l~~L~~~-----~~vavDtE~~~~~~~~~~l~lIQLa~~~~~~lidpl~l~~~l~~L~~ 176 (428)
T 3saf_A 104 PIEETPCH--FISSLDELVELNEKLLNC-----QEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNE 176 (428)
T ss_dssp CGGGSCEE--EECSHHHHHHHHHHHTTC-----SEEEEEEEEECTTCSSCEEEEEEEECSSCEEEEETTTTGGGGGGGHH
T ss_pred CCCCCCcE--EECCHHHHHHHHHHHhcC-----CeEEEEEEecCCCCCCCeEEEEEEEeCCcEEEEEeccchhhHHHHHH
Confidence 34444443 446889999999987642 22333 256789999999 566422 3478999
Q ss_pred hhcCCCeeEEEe--------------------eeHHHHHHHhcCCcchhcccHHHHHHHHcCcccccCCcccccCCCCCC
Q 045621 100 FLDNDKFTFVGT--------------------MDVADMAAAKYDDEELKTFGLKRLVLKFLHVEMEKSKRITLSKWDVNN 159 (205)
Q Consensus 100 fL~d~~i~kvGv--------------------~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l~K~~~v~~SnW~~rp 159 (205)
+|+|++|.|||+ ||++..+ ..+|.+ +.||+.|++++||..++|.++ +|||.+||
T Consensus 177 lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa-~lL~~~---~~gL~~Lv~~~Lg~~l~K~~~--~sdW~~rp 250 (428)
T 3saf_A 177 SLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAA-RLLNLG---RHSLDHLLKLYCNVDSNKQYQ--LADWRIRP 250 (428)
T ss_dssp HHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHH-HHTTCS---CCSHHHHHHHHHCCCCCCTTT--TSCTTCSS
T ss_pred HHcCCCceEEEeehHHHHHHHHHHcCCCcCceeechhHH-HHhCCC---CCCHHHHHHHHcCCCCCcccc--ccccccCC
Confidence 999999999999 6776555 356643 579999999999999999887 99999999
Q ss_pred CCHHHHHHHHhhHHHHHHHHHHHHHh
Q 045621 160 LSKQQIRYAAIDAFVSFKLAIELKKE 185 (205)
Q Consensus 160 Ls~~Qi~YAA~DA~~~~~I~~~L~~~ 185 (205)
|+++|+.|||.||++++.||+.|...
T Consensus 251 Ls~~q~~YAA~DA~~ll~L~~~L~~~ 276 (428)
T 3saf_A 251 LPEEMLSYARDDTHYLLYIYDKMRLE 276 (428)
T ss_dssp CCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.70 E-value=9.8e-17 Score=145.96 Aligned_cols=161 Identities=16% Similarity=0.214 Sum_probs=116.4
Q ss_pred ccccccCCCCCCCCCCCCceeEEEeCCcEEEEEEcCCHHHHHHHHHHHHHhhhccccceee-----c---cCCceeeEEE
Q 045621 14 EIKPLAYNSSSSIEPLGHNIWGINFGEDYFVTTVTSRASDVDRWIARTINVHRRRLHRLIT-----N---KLQKVAIIQL 85 (205)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~y~V~f~g~~I~vtvT~~~~~v~~wi~~~~~~~~~~~~~lvv-----~---~~~~vaLiQL 85 (205)
||....|.++..... .......|.+..+.+ | .+.+.+..|+..+... ..+.+ + ..+++++|||
T Consensus 60 ei~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-I-~t~~~L~~~~~~L~~~-----~~vavDtE~~~~~~~~~~l~liQl 130 (410)
T 2hbj_A 60 EIDHQEYSPEILQIR--EEIPSKSWDDSVPIW-V-DTSTELESMLEDLKNT-----KEIAVDLEHHDYRSYYGIVCLMQI 130 (410)
T ss_dssp HHHHSCCCGGGSSCC--CCCCCCCGGGCCCEE-E-CSHHHHHHHHHHHTTC-----SEEEEEEEEECSSSSSCEEEEEEE
T ss_pred HHhhCCCCHHHhccC--CCCCCCCcCCCCcEE-e-CCHHHHHHHHHHHhhC-----CceEEEeeecCCcCCCCcEEEEEE
Confidence 345555544443221 222445566654433 2 3478899999865431 12222 1 3678999999
Q ss_pred E------EEee---CCCCHHHHHhhcCCCeeEEEe--------------------eeHHHHHHHhcCCcchhcccHHHHH
Q 045621 86 C------LFHK---DRMPQSLVDFLDNDKFTFVGT--------------------MDVADMAAAKYDDEELKTFGLKRLV 136 (205)
Q Consensus 86 c------L~~~---~~~p~~L~~fL~d~~i~kvGv--------------------~Dl~~la~~~lg~~~~~~~gL~~Lv 136 (205)
| |++. ......|+.+|+|++|+|||+ ||++..|. .+|. .+.||+.|+
T Consensus 131 a~~~~~ylid~l~l~~~l~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~-LL~~---~~~~L~~L~ 206 (410)
T 2hbj_A 131 STRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASK-AIGL---PRHSLAYLL 206 (410)
T ss_dssp ECSSCEEEEETTTTTTTGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHH-HHTC---SCCSHHHHH
T ss_pred EECCcEEEEechhhhhhHHHHHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHH-HhCC---CccCHHHHH
Confidence 9 5553 123468999999999999998 77765553 5663 268999999
Q ss_pred HHHcCcccccCCcccccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhHHcC
Q 045621 137 LKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKKEIIAL 189 (205)
Q Consensus 137 ~~~lg~~l~K~~~v~~SnW~~rpLs~~Qi~YAA~DA~~~~~I~~~L~~~~~~~ 189 (205)
+++||..++|..+ +|||..|||+++|+.|||.||++++.||..|..+....
T Consensus 207 ~~~lg~~l~K~~~--~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~ 257 (410)
T 2hbj_A 207 ENFANFKTSKKYQ--LADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIES 257 (410)
T ss_dssp HHHSCCCCCCTTT--TSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCcccc--ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999877 99999999999999999999999999999998874433
No 5
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.64 E-value=2.3e-15 Score=134.79 Aligned_cols=130 Identities=19% Similarity=0.239 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHHhhhccccceee--------ccCCceeeEEEE------EEeeCC--CCHHHHHhhcCCCeeEEEe-
Q 045621 49 SRASDVDRWIARTINVHRRRLHRLIT--------NKLQKVAIIQLC------LFHKDR--MPQSLVDFLDNDKFTFVGT- 111 (205)
Q Consensus 49 ~~~~~v~~wi~~~~~~~~~~~~~lvv--------~~~~~vaLiQLc------L~~~~~--~p~~L~~fL~d~~i~kvGv- 111 (205)
.+.+.+.+|+..+... ..+.+ ...+++++|||| +++... ....|+.+|+|++|.|||+
T Consensus 7 ~t~~~l~~~~~~l~~~-----~~va~D~E~~~~~~~~~~l~liqla~~~~~~lid~~~l~~~~~L~~ll~d~~i~Kv~h~ 81 (375)
T 1yt3_A 7 TTDDALASLCEAVRAF-----PAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHA 81 (375)
T ss_dssp CSHHHHHHHHHHHTTS-----SEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCSCCHHHHHHHHCTTSEEEESS
T ss_pred CCHHHHHHHHHHHcCC-----CeEEEEeeecCCCcCCCceEEEEEecCCcEEEEeCCCCCChHHHHHHHcCCCceEEEee
Confidence 3578899998865431 12222 135789999999 555222 3578999999999999998
Q ss_pred -------------------eeHHHHHHHhcCCcchhcccHHHHHHHHcCcccccCCcccccCCCCCCCCHHHHHHHHhhH
Q 045621 112 -------------------MDVADMAAAKYDDEELKTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDA 172 (205)
Q Consensus 112 -------------------~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l~K~~~v~~SnW~~rpLs~~Qi~YAA~DA 172 (205)
||++..+ ..+|.. .+.||+.|++++||..++|.++ +|||..+||+++|+.|||.||
T Consensus 82 ~k~Dl~~L~~~~Gi~~~~~fDt~lAa-~lL~~~--~~~~L~~L~~~~l~~~l~K~~~--~sdw~~rpL~~~q~~YAa~Da 156 (375)
T 1yt3_A 82 GSEDLEVFLNVFGELPQPLIDTQILA-AFCGRP--MSWGFASMVEEYSGVTLDKSES--RTDWLARPLTERQCEYAAADV 156 (375)
T ss_dssp CHHHHHHHHHHHSSCCSSEEEHHHHH-HHTTCC--TTCCHHHHHHHHHCCCCCCTTT--TSCTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcEEEcHHHH-HHcCCC--CChhHHHHHHHHcCCCCCCCcc--cCCCCCCCCCHHHHHHHHHHH
Confidence 7776655 356653 4899999999999999999887 899999999999999999999
Q ss_pred HHHHHHHHHHHHhHHc
Q 045621 173 FVSFKLAIELKKEIIA 188 (205)
Q Consensus 173 ~~~~~I~~~L~~~~~~ 188 (205)
++++.+|..|.+.-..
T Consensus 157 ~~l~~L~~~L~~~L~~ 172 (375)
T 1yt3_A 157 WYLLPITAKLMVETEA 172 (375)
T ss_dssp HTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999877443
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.44 E-value=1.3e-12 Score=119.81 Aligned_cols=124 Identities=18% Similarity=0.269 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHHHHhhhccccceee--------ccCCceeeEEEE-------EEee-C-----CCCHHHHHhhcCCCeeE
Q 045621 50 RASDVDRWIARTINVHRRRLHRLIT--------NKLQKVAIIQLC-------LFHK-D-----RMPQSLVDFLDNDKFTF 108 (205)
Q Consensus 50 ~~~~v~~wi~~~~~~~~~~~~~lvv--------~~~~~vaLiQLc-------L~~~-~-----~~p~~L~~fL~d~~i~k 108 (205)
+.+.+.+|+..+.... ..+.+ .+.+++++|||| +|+. . .....|+.+|+|+ .|
T Consensus 23 t~e~L~~~~~~L~~~~----~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~l~~L~~lL~d~--~K 96 (440)
T 3cym_A 23 TLPAFRDYCSELASSH----GSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGDA--VW 96 (440)
T ss_dssp SHHHHHHHHHHHHSCE----EEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCHHHHHHHHTTC--EE
T ss_pred CHHHHHHHHHHHHhcC----CeEEEEeeecCCCCCCCCEEEEEEEECCCcEEEEEcCCccccccCHHHHHHHHCCC--CE
Confidence 4688999998754310 11222 136789999999 3332 1 1235899999998 68
Q ss_pred EEe-------------------eeHHHHHHHhcCCcchhcccHHHHHHHHcCcccccCCcccccCCCCCCCCHHHHHHHH
Q 045621 109 VGT-------------------MDVADMAAAKYDDEELKTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAA 169 (205)
Q Consensus 109 vGv-------------------~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l~K~~~v~~SnW~~rpLs~~Qi~YAA 169 (205)
||+ ||+. +|...++. .+.||+.|++.++|..++|..+ +|||..+||+++|+.|||
T Consensus 97 V~h~~k~Dl~~L~~~gi~~~~~fDt~-lAa~lL~~---~~~gL~~L~~~~lg~~~~K~~~--~sdw~~rpLs~~q~~YAa 170 (440)
T 3cym_A 97 ILHDSLQDLPGFDELGMEPQRLFDTE-IAARLLGL---KRFGLAAVTEHFLGLTLAKEHS--AADWSYRPLPRDWRNYAA 170 (440)
T ss_dssp EESSHHHHHHHHHHHTCCCCEEEEHH-HHHHHTTC---SSCSHHHHHHHHHCEECCCCCT--TCCTTCSSCCHHHHHHHH
T ss_pred EEEcCHHHHHHHHHcCCcCCceehHH-HHHHHhCC---CCCCHHHHHHHHhCCCcccccc--cCCCcCCCCCHHHHHHHH
Confidence 887 8884 55567774 2899999999999999999877 999999999999999999
Q ss_pred hhHHHHHHHHHHHHHh
Q 045621 170 IDAFVSFKLAIELKKE 185 (205)
Q Consensus 170 ~DA~~~~~I~~~L~~~ 185 (205)
.||++++.||..|...
T Consensus 171 ~Da~~Ll~L~~~L~~~ 186 (440)
T 3cym_A 171 LDVELLIELETKMRAE 186 (440)
T ss_dssp HHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999665
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.61 E-value=7.7e-07 Score=84.22 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHHhhhccccceee-----c---cCCceeeEEEEE-----Eee--C--------CCC-----HHHHHhh
Q 045621 50 RASDVDRWIARTINVHRRRLHRLIT-----N---KLQKVAIIQLCL-----FHK--D--------RMP-----QSLVDFL 101 (205)
Q Consensus 50 ~~~~v~~wi~~~~~~~~~~~~~lvv-----~---~~~~vaLiQLcL-----~~~--~--------~~p-----~~L~~fL 101 (205)
+++.+.+|++.+... ..+++ + ...++..||+|+ +.+ . .++ +.|+.||
T Consensus 12 ~~~~l~~~~~~l~~~-----~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L~~~L 86 (605)
T 2kfn_A 12 DEETLKAWIAKLEKA-----PVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPLL 86 (605)
T ss_dssp SHHHHHHHHHHHHTS-----SSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcccC-----CeEEEEEecCCCCcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHHHHHHH
Confidence 468899999875431 12233 2 246788888881 222 1 121 4699999
Q ss_pred cCCCeeEEEe--------------------eeHHHHHHHhcCCcchhcccHHHHHHHHcCccc-------ccCCcccccC
Q 045621 102 DNDKFTFVGT--------------------MDVADMAAAKYDDEELKTFGLKRLVLKFLHVEM-------EKSKRITLSK 154 (205)
Q Consensus 102 ~d~~i~kvGv--------------------~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l-------~K~~~v~~Sn 154 (205)
+|+++.|||+ +|+..++. .++ ++..+.||+.|++.+||... .|.++ .++
T Consensus 87 ~d~~i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laay-LL~-p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~--~~~ 162 (605)
T 2kfn_A 87 EDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESY-ILN-SVAGRHDMDSLAERWLKHKTITFEEIAGKGKN--QLT 162 (605)
T ss_dssp TCTTSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHH-HHC-TTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTT--CCC
T ss_pred cCCCCeEEEECcHHHHHHHHHCCCCCCCccccHHHHHH-HhC-CCCCCCCHHHHHHHhcCCCcccHHHHhCCCcc--cCC
Confidence 9999999998 55544443 343 22247899999999998764 35555 679
Q ss_pred CCCCCCCHHHHHHHHhhHHHHHHHHHHHHHh
Q 045621 155 WDVNNLSKQQIRYAAIDAFVSFKLAIELKKE 185 (205)
Q Consensus 155 W~~rpLs~~Qi~YAA~DA~~~~~I~~~L~~~ 185 (205)
|..++| ++|.+||+.||++++.+|.+|...
T Consensus 163 ~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~ 192 (605)
T 2kfn_A 163 FNQIAL-EEAGRYAAEDADVTLQLHLKMWPD 192 (605)
T ss_dssp GGGSCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888 789999999999999999999875
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=98.37 E-value=8.8e-07 Score=83.93 Aligned_cols=108 Identities=9% Similarity=-0.064 Sum_probs=82.6
Q ss_pred cCCceeeEEEE----EEeeC----CCCHHHHHhhcCCCeeEEEe--------------------eeHHHHHHHhcCCcch
Q 045621 76 KLQKVAIIQLC----LFHKD----RMPQSLVDFLDNDKFTFVGT--------------------MDVADMAAAKYDDEEL 127 (205)
Q Consensus 76 ~~~~vaLiQLc----L~~~~----~~p~~L~~fL~d~~i~kvGv--------------------~Dl~~la~~~lg~~~~ 127 (205)
...+++.||+| .+.++ .....|+.+|+|+++.|||+ +|+...+ ..++ ++.
T Consensus 44 ~~a~Lvgisla~~~~a~yIp~~~~~~l~~Lk~lLed~~i~KV~hn~K~Dl~vL~~~Gi~l~g~~fDTmLAA-YLL~-p~~ 121 (592)
T 3pv8_A 44 HDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAA-YLLD-PAQ 121 (592)
T ss_dssp TTCCCCEEEEEETTEEEEECHHHHTTCHHHHHHHTCTTSEEEESSHHHHHHHHHHTTCCCCCEEEEHHHHH-HHHC-GGG
T ss_pred CcccEEEEEEEcCCceEEEccchhhHHHHHHHHHhCCCCeEEEechHHHHHHHHHcCCCCCCccchHHHHH-HHcC-CCC
Confidence 45678889998 33321 34578999999999999998 5654333 3444 323
Q ss_pred hcccHHHHHHHHcCcccccCCcccccCCCC---CCCCHHHHHHHHhhHHHHHHHHHHHHHhHH
Q 045621 128 KTFGLKRLVLKFLHVEMEKSKRITLSKWDV---NNLSKQQIRYAAIDAFVSFKLAIELKKEII 187 (205)
Q Consensus 128 ~~~gL~~Lv~~~lg~~l~K~~~v~~SnW~~---rpLs~~Qi~YAA~DA~~~~~I~~~L~~~~~ 187 (205)
.+.||+.|++++||..+.+.+. ..+|++ .+++++|..|||.||.+++.++..|.....
T Consensus 122 ~~~~L~~La~~yLg~~l~~~ee--~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~ 182 (592)
T 3pv8_A 122 GVDDVAAAAKMKQYEAVRPDEA--VYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELR 182 (592)
T ss_dssp CCCSHHHHHGGGTCCSSCCHHH--HHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHcCCCCchHHH--hcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999988766 667754 456688999999999999999999987743
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=96.95 E-value=0.00069 Score=65.08 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=76.2
Q ss_pred cCCceeeEEEE--------EEeeCCC---CHHHHHhhcCCCeeEEEe----eeHHHHHHHh-----cCC--c--------
Q 045621 76 KLQKVAIIQLC--------LFHKDRM---PQSLVDFLDNDKFTFVGT----MDVADMAAAK-----YDD--E-------- 125 (205)
Q Consensus 76 ~~~~vaLiQLc--------L~~~~~~---p~~L~~fL~d~~i~kvGv----~Dl~~la~~~-----lg~--~-------- 125 (205)
...+++++|++ +++...+ .+.|+.||+ +++.|||+ +|+..+.+.. .|. .
T Consensus 14 ~~d~i~~iqi~~~~~~~~~~~~p~~i~~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTm 92 (698)
T 1x9m_A 14 SVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTL 92 (698)
T ss_dssp GCCCEEEEEEEETTTTEEEEECGGGHHHHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHH
T ss_pred CCCEEEEEEEEecCCCcEEEEChHHHHHHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHH
Confidence 35689999998 3333223 368999999 99999998 6887776531 031 1
Q ss_pred --------chhcccHHHHHHHHc-------Cccc-----c-----------cCCccc-ccCCCCCCCCHHHHHHHHhhHH
Q 045621 126 --------ELKTFGLKRLVLKFL-------HVEM-----E-----------KSKRIT-LSKWDVNNLSKQQIRYAAIDAF 173 (205)
Q Consensus 126 --------~~~~~gL~~Lv~~~l-------g~~l-----~-----------K~~~v~-~SnW~~rpLs~~Qi~YAA~DA~ 173 (205)
+..+.||+.|++.+| |..+ + |.++-. .++|.. +++++.+||+.||.
T Consensus 93 laayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~--~~~~~~~YA~~Da~ 170 (698)
T 1x9m_A 93 VLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWN--FNEEMMDYNVQDVV 170 (698)
T ss_dssp HHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTS--CCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccc--cCHHHHHHHHHHHH
Confidence 113677888888877 5333 2 332211 238975 77999999999999
Q ss_pred HHHHHHHHHHHhHHcC
Q 045621 174 VSFKLAIELKKEIIAL 189 (205)
Q Consensus 174 ~~~~I~~~L~~~~~~~ 189 (205)
+.+.||.+|.......
T Consensus 171 ~t~~L~~~L~~~L~~~ 186 (698)
T 1x9m_A 171 VTKALLEKLLSDKHYF 186 (698)
T ss_dssp HHHHHHHHHHTCTTTS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998874433
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=91.51 E-value=0.21 Score=46.64 Aligned_cols=84 Identities=13% Similarity=0.081 Sum_probs=59.9
Q ss_pred cCCceeeEEEE----EEeeCCCCHHHHHhhcCCCeeEEEe----------------eeHHHHHHHhcCCcchhcccHHHH
Q 045621 76 KLQKVAIIQLC----LFHKDRMPQSLVDFLDNDKFTFVGT----------------MDVADMAAAKYDDEELKTFGLKRL 135 (205)
Q Consensus 76 ~~~~vaLiQLc----L~~~~~~p~~L~~fL~d~~i~kvGv----------------~Dl~~la~~~lg~~~~~~~gL~~L 135 (205)
...+++.+|+| .+..+...+.|+.||+| +.|||+ +|+...|. .++ ++ +.||+.|
T Consensus 25 ~~a~Lvgi~la~~~~a~~i~~~l~~l~~~l~d--~~kV~hn~K~Dl~~~Gi~~~~~fDT~laAy-LL~-p~--~~~L~~L 98 (540)
T 4dfk_A 25 MWADLLALAAARGGRVHRAPEPYKALRDLKEA--RGLLAKDLSVLALREGLGLPPGDDPMLLAY-LLD-PS--NTTPEGV 98 (540)
T ss_dssp TTCCEEEEEEEETTEEEECSSHHHHHTTCSSB--CSTTHHHHHHHHHHTTCCCCBCCCHHHHHH-HHC-TT--CCCHHHH
T ss_pred CcccEEEEEEEcCCEEEEehhhHHHHHHHHcC--CCEEEeccHHHHHHcCCCCCcceeHHHHHH-HhC-CC--CCCHHHH
Confidence 45677888998 44433344788899988 677765 56554443 444 33 7899999
Q ss_pred HHHHcCcccccCCcccccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhH
Q 045621 136 VLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKKEI 186 (205)
Q Consensus 136 v~~~lg~~l~K~~~v~~SnW~~rpLs~~Qi~YAA~DA~~~~~I~~~L~~~~ 186 (205)
+++++|. |++ +|+.||.+++.+|..|....
T Consensus 99 a~~yl~~------------~gk---------~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 99 ARRYGGE------------WTE---------EAGERAALSERLFANLWGRL 128 (540)
T ss_dssp HHHHTSC------------CCS---------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhh------------hcc---------chHHHHHHHHHHHHHHHHHH
Confidence 9999886 221 37799999999999997654
No 11
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=91.41 E-value=0.89 Score=35.83 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=36.5
Q ss_pred hcccHHHHHHHHcCcccccCCcccccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhHHcCCCCC
Q 045621 128 KTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKKEIIALPKPT 193 (205)
Q Consensus 128 ~~~gL~~Lv~~~lg~~l~K~~~v~~SnW~~rpLs~~Qi~YAA~DA~~~~~I~~~L~~~~~~~p~~~ 193 (205)
.+.||+.+++.++|..+.... +-+-|..||.++.+++.++.+..+..-.+.
T Consensus 126 ~~~~L~~l~~~~lgi~~~~~~---------------~~H~Al~Da~ata~l~~~l~~~~~~~~~~~ 176 (189)
T 1wlj_A 126 RRVSLRVLSERLLHKSIQNSL---------------LGHSSVEDARATMELYQISQRIRARRGLPR 176 (189)
T ss_dssp --CCHHHHHHHHTCCCCSCCT---------------TCCCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCccHHHHHHHHcCCCCCCCC---------------CCcCcHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 578999999998898776521 123488999999999999988854443433
No 12
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=80.67 E-value=4.8 Score=31.31 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=18.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHh
Q 045621 165 IRYAAIDAFVSFKLAIELKKE 185 (205)
Q Consensus 165 i~YAA~DA~~~~~I~~~L~~~ 185 (205)
-+.|..||.++.+|+.++.+.
T Consensus 155 ~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 155 HHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHHHHHHHHH
Confidence 367999999999999998765
No 13
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=79.96 E-value=2.4 Score=34.86 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=31.2
Q ss_pred hcccHHHHHHHHcCcccccCCcccccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHh
Q 045621 128 KTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKKE 185 (205)
Q Consensus 128 ~~~gL~~Lv~~~lg~~l~K~~~v~~SnW~~rpLs~~Qi~YAA~DA~~~~~I~~~L~~~ 185 (205)
.+.+|..++++++|......++ |..||.++.+|+.++.+.
T Consensus 175 ~~~~L~~l~~~~~gi~~~~~H~------------------Al~Da~ata~l~~~~~~~ 214 (242)
T 3mxm_B 175 KSYSLGSIYTRLYWQAPTDSHT------------------AEGDDLTLLSICQWKPQA 214 (242)
T ss_dssp CCCSHHHHHHHHHSSCCSSTTS------------------HHHHHHHHHHHHTSSHHH
T ss_pred CCcCHHHHHHHHhCCCCCCCcC------------------hHHHHHHHHHHHHHHHHH
Confidence 4667888888878877655454 889999999998877655
No 14
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=77.57 E-value=6.8 Score=30.59 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=39.3
Q ss_pred eeeHHHHHHHhcCCcchhcccHHHHHHHHcCccccc-CCcccccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhHHcC
Q 045621 111 TMDVADMAAAKYDDEELKTFGLKRLVLKFLHVEMEK-SKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKKEIIAL 189 (205)
Q Consensus 111 v~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l~K-~~~v~~SnW~~rpLs~~Qi~YAA~DA~~~~~I~~~L~~~~~~~ 189 (205)
++|+..+++..++.+ ..+.+|+.|++. +|..... .+ =|..||.++.+|+.++.+....+
T Consensus 139 ~~dt~~l~~~~~~~~-~~~~~L~~l~~~-~gi~~~~~~H------------------~Al~Da~~ta~l~~~l~~~~~~~ 198 (204)
T 1w0h_A 139 WINIRKSYGNFYKVP-RSQTKLTIMLEK-LGMDYDGRPH------------------CGLDDSKNIARIAVRMLQDGCEL 198 (204)
T ss_dssp EEEHHHHHHHHHTCC-GGGCSHHHHHHH-TTCCCCSCTT------------------CHHHHHHHHHHHHHHHHHTTCCC
T ss_pred eEEHHHHHHHHhCCC-CccchHHHHHHH-cCCCCCCCcc------------------CcHHHHHHHHHHHHHHHHCCCee
Confidence 366666665544421 134678888776 5765542 23 38899999999999999875544
No 15
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=77.36 E-value=8.2 Score=30.98 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=26.2
Q ss_pred hcccHHHHHHHHcCcccccCCcccccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHh
Q 045621 128 KTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKKE 185 (205)
Q Consensus 128 ~~~gL~~Lv~~~lg~~l~K~~~v~~SnW~~rpLs~~Qi~YAA~DA~~~~~I~~~L~~~ 185 (205)
.+.+|..++++++|.... +-+-|..||..+.+++.++.+.
T Consensus 170 ~~~~L~~l~~~~~gi~~~------------------~~H~Al~Da~~ta~l~~~l~~~ 209 (238)
T 1y97_A 170 QGYSLGSLFHRYFRAEPS------------------AAHSAEGDVHTLLLIFLHRAAE 209 (238)
T ss_dssp -CCSHHHHHHHHHSSCCC---------------------CHHHHHHHHHHHHHHTHHH
T ss_pred CCCCHHHHHHHHhCCCCc------------------cCccHHHHHHHHHHHHHHHHHH
Confidence 355666666655554432 2467999999999999988765
No 16
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=75.54 E-value=4.1 Score=32.89 Aligned_cols=24 Identities=21% Similarity=0.011 Sum_probs=20.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHH
Q 045621 164 QIRYAAIDAFVSFKLAIELKKEII 187 (205)
Q Consensus 164 Qi~YAA~DA~~~~~I~~~L~~~~~ 187 (205)
+-++|..||.++.+|+.+|.+...
T Consensus 199 ~~H~Al~DA~~ta~l~~~l~~~l~ 222 (235)
T 3v9w_A 199 QAHSALYDTERTAVLFCEIVNRWK 222 (235)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999988743
No 17
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=73.67 E-value=3 Score=35.86 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=53.9
Q ss_pred CCCCHHHHHhhcCCCeeEEEeeeHHHHHHHhcCCcc-----------hhcccHHHHHHHHcCcccccCCcccccCCCCCC
Q 045621 91 DRMPQSLVDFLDNDKFTFVGTMDVADMAAAKYDDEE-----------LKTFGLKRLVLKFLHVEMEKSKRITLSKWDVNN 159 (205)
Q Consensus 91 ~~~p~~L~~fL~d~~i~kvGv~Dl~~la~~~lg~~~-----------~~~~gL~~Lv~~~lg~~l~K~~~v~~SnW~~rp 159 (205)
..+|+.+.+|++.=+..|=+++|++.+++...+..+ ..+.||+.+|+. ||++ ++..
T Consensus 177 ~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~-L~v~-----r~g~------- 243 (289)
T 1uoc_A 177 DSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADE-LGLP-----RFSI------- 243 (289)
T ss_dssp SCCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHH-TTCC-----CCGG-------
T ss_pred ccCCcCHHHHHHHHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHH-cCCC-----ccCc-------
Confidence 468888888888766555556999999875332211 135689999988 5642 1111
Q ss_pred CCHHHHHHHHhhHHHHHHHHHHHHHh
Q 045621 160 LSKQQIRYAAIDAFVSFKLAIELKKE 185 (205)
Q Consensus 160 Ls~~Qi~YAA~DA~~~~~I~~~L~~~ 185 (205)
-+-|..|++....+|.+|++.
T Consensus 244 -----~HqAGsDSllT~~~F~kl~~~ 264 (289)
T 1uoc_A 244 -----FTTTGGQSLLMLLSFCQLSKL 264 (289)
T ss_dssp -----GGSHHHHHHHHHHHHHHHHHH
T ss_pred -----ccccHHHHHHHHHHHHHHHHH
Confidence 255999999999999999977
No 18
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=68.52 E-value=3.3 Score=35.51 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=53.4
Q ss_pred CCCCHHHHHhhcCCCeeEEEeeeHHHHHHHhcCCcchhcccHHHHHHHHcCc-ccccCCcccccCCCCCCCCHHHHHHHH
Q 045621 91 DRMPQSLVDFLDNDKFTFVGTMDVADMAAAKYDDEELKTFGLKRLVLKFLHV-EMEKSKRITLSKWDVNNLSKQQIRYAA 169 (205)
Q Consensus 91 ~~~p~~L~~fL~d~~i~kvGv~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~-~l~K~~~v~~SnW~~rpLs~~Qi~YAA 169 (205)
..+|+.+.+|+..-+..|=.++|+..+++. ++. ..-||+.+|+. ||+ ++.+.+ -|.
T Consensus 172 ~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~-~~~---l~ggL~~lA~~-L~v~r~g~~H------------------qAG 228 (285)
T 4gmj_B 172 SNLPEEELDFFEILRLFFPVIYDVKYLMKS-CKN---LKGGLQEVAEQ-LELERIGPQH------------------QAG 228 (285)
T ss_dssp SCCCSSHHHHHHHHHHHCSCEEEHHHHGGG-STT---CCSCHHHHHHH-TTCCCCSCTT------------------SHH
T ss_pred CCCCCCHHHHHHHHHHHCchhhhHHHHHHh-ccc---cCChHHHHHHh-CCCCCCCCCC------------------cch
Confidence 568999999988755444445999999864 321 35689999987 663 343333 389
Q ss_pred hhHHHHHHHHHHHHHh
Q 045621 170 IDAFVSFKLAIELKKE 185 (205)
Q Consensus 170 ~DA~~~~~I~~~L~~~ 185 (205)
-|++....+|.+|++.
T Consensus 229 sDSllT~~~F~kl~~~ 244 (285)
T 4gmj_B 229 SDSLLTGMAFFKMREM 244 (285)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999887
No 19
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=66.09 E-value=17 Score=30.53 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=22.5
Q ss_pred HHHHhhHHHHHHHHHHHHHhHHcCCCCCcc
Q 045621 166 RYAAIDAFVSFKLAIELKKEIIALPKPTTF 195 (205)
Q Consensus 166 ~YAA~DA~~~~~I~~~L~~~~~~~p~~~~~ 195 (205)
+=|..||.++.+|+.++.+....+.-.+.+
T Consensus 243 H~Al~DA~ata~l~~~l~~~~~~~~~~~l~ 272 (299)
T 1zbh_A 243 NCGLDDSKNIARIAVRMLQDGCELRINEKM 272 (299)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCCCEEE
T ss_pred CChHHHHHHHHHHHHHHHHhCCcCChhhhh
Confidence 448899999999999999876555443433
No 20
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=64.60 E-value=4.9 Score=33.80 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=54.5
Q ss_pred CCCCHHHHHhhcCCCeeEEEeeeHHHHHHHhcCCcchhcccHHHHHHHHcCc-ccccCCcccccCCCCCCCCHHHHHHHH
Q 045621 91 DRMPQSLVDFLDNDKFTFVGTMDVADMAAAKYDDEELKTFGLKRLVLKFLHV-EMEKSKRITLSKWDVNNLSKQQIRYAA 169 (205)
Q Consensus 91 ~~~p~~L~~fL~d~~i~kvGv~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~-~l~K~~~v~~SnW~~rpLs~~Qi~YAA 169 (205)
..+|..+.+|++.=+..|=+++|+..+++. +. + ...||+.+++.+ |+ ++.+ -+-|+
T Consensus 162 ~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~-~~--~-l~~gL~~la~~L-~v~r~g~------------------~HqAG 218 (252)
T 2d5r_A 162 SNLPEEELDFFEILRLFFPVIYDVKYLMKS-CK--N-LKGGLQEVAEQL-ELERIGP------------------QHQAG 218 (252)
T ss_dssp SCCCSSHHHHHHHHHHHCSCEEEHHHHGGG-CT--T-CCSSHHHHHHHH-TCCCCSS------------------TTSHH
T ss_pred CCCCCCHHHHHHHHHHHCcchhhHHHHHHH-hc--c-cCCCHHHHHHHc-CCCccCc------------------ccchh
Confidence 578999999988866666566999999975 32 2 357899999984 53 2222 24589
Q ss_pred hhHHHHHHHHHHHHHh
Q 045621 170 IDAFVSFKLAIELKKE 185 (205)
Q Consensus 170 ~DA~~~~~I~~~L~~~ 185 (205)
.|++....+|.++.+.
T Consensus 219 sDsllT~~~F~km~~~ 234 (252)
T 2d5r_A 219 SDSLLTGMAFFKMREM 234 (252)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999999877
No 21
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=64.59 E-value=18 Score=31.26 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=30.8
Q ss_pred hcccHHHHHHHHcCcccccCCcccccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHh
Q 045621 128 KTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKKE 185 (205)
Q Consensus 128 ~~~gL~~Lv~~~lg~~l~K~~~v~~SnW~~rpLs~~Qi~YAA~DA~~~~~I~~~L~~~ 185 (205)
.+.+|.++++.++|......++ |..||.++.+|+.++.+.
T Consensus 175 ~~~~L~~L~~~l~gi~~~~aHr------------------Al~DA~ata~lf~~l~~~ 214 (314)
T 3u3y_B 175 KSYSLGSIYTRLYWQAPTDSHT------------------AEGHVLTLLSICQWKPQA 214 (314)
T ss_dssp CCCSHHHHHHHHHSSCCSCSSS------------------HHHHHHHHHHHHHSSHHH
T ss_pred CCCCHHHHHHHhcCCCCCCCCC------------------HHHHHHHHHHHHHHHHHH
Confidence 3567888888777777655555 889999999999887665
No 22
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=62.22 E-value=5.1 Score=35.19 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=53.7
Q ss_pred CCCCHHHHHhhcCCCeeEEEeeeHHHHHHHhcCCcchhcccHHHHHHHHcCc-ccccCCcccccCCCCCCCCHHHHHHHH
Q 045621 91 DRMPQSLVDFLDNDKFTFVGTMDVADMAAAKYDDEELKTFGLKRLVLKFLHV-EMEKSKRITLSKWDVNNLSKQQIRYAA 169 (205)
Q Consensus 91 ~~~p~~L~~fL~d~~i~kvGv~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~-~l~K~~~v~~SnW~~rpLs~~Qi~YAA 169 (205)
..+|..+.+|++.=+..|=+++|++.+++. +. + ...||+.+++. ||+ ++.+ -+-|+
T Consensus 183 ~~LP~~~~eF~~~l~~~FP~iYD~K~l~~~-~~--~-l~ggL~~lA~~-L~v~Rig~------------------~HqAG 239 (333)
T 2p51_A 183 IPLPAEYEEFYKILCIYFPKNYDIKYIMKS-VL--N-NSKGLQDIADD-LQIHRIGP------------------QHQAG 239 (333)
T ss_dssp SCCCSSHHHHHHHHHHHSSSEEEHHHHHTT-TT--C-CCCCHHHHHHH-TTCCCCSC------------------TTSHH
T ss_pred CCCCCCHHHHHHHHHHHCcchhhHHHHHHH-hc--c-ccCCHHHHHHH-cCCCccCc------------------chhhh
Confidence 468888888888766655556999999965 22 2 25689999887 463 2222 24589
Q ss_pred hhHHHHHHHHHHHHHhH
Q 045621 170 IDAFVSFKLAIELKKEI 186 (205)
Q Consensus 170 ~DA~~~~~I~~~L~~~~ 186 (205)
.|++....+|.+|.+..
T Consensus 240 sDSlLT~~~F~kl~~~~ 256 (333)
T 2p51_A 240 SDALLTARIFFEIRSRY 256 (333)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 99999999999999873
No 23
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=61.82 E-value=23 Score=30.85 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=22.4
Q ss_pred HHHHhhHHHHHHHHHHHHHhHHcCCCCCcc
Q 045621 166 RYAAIDAFVSFKLAIELKKEIIALPKPTTF 195 (205)
Q Consensus 166 ~YAA~DA~~~~~I~~~L~~~~~~~p~~~~~ 195 (205)
+=|..||.++.+|+.++......+.--+.+
T Consensus 293 HrAl~DA~ata~ll~~ll~~~~~~~i~ell 322 (349)
T 1zbu_A 293 HCGLDDSKNIARIAVRMLQDGCELRINEKM 322 (349)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 448899999999999999876555433333
No 24
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=61.02 E-value=17 Score=28.01 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=16.7
Q ss_pred HHHHhhHHHHHHHHHHHHHhHHc
Q 045621 166 RYAAIDAFVSFKLAIELKKEIIA 188 (205)
Q Consensus 166 ~YAA~DA~~~~~I~~~L~~~~~~ 188 (205)
+-|..||.++.+|+.++.+..+.
T Consensus 165 H~Al~Da~~ta~l~~~l~~~~~~ 187 (194)
T 2gui_A 165 HGALLDAQILAEVYLAMTGGQTS 187 (194)
T ss_dssp CCHHHHHHHHHHHHHHHTC----
T ss_pred CChHHHHHHHHHHHHHHHhccch
Confidence 44889999999999999876443
No 25
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=58.41 E-value=30 Score=27.37 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=20.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHcC
Q 045621 165 IRYAAIDAFVSFKLAIELKKEIIAL 189 (205)
Q Consensus 165 i~YAA~DA~~~~~I~~~L~~~~~~~ 189 (205)
-+-|..||.++.+|+.++.+..+.+
T Consensus 192 ~H~Al~Da~~ta~l~~~l~~~~~~~ 216 (224)
T 2f96_A 192 AHSARYDTEKTAELFCGIVNRWKEM 216 (224)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHh
Confidence 3558999999999999999886655
No 26
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=58.03 E-value=20 Score=27.99 Aligned_cols=85 Identities=15% Similarity=0.111 Sum_probs=50.3
Q ss_pred HHHHHhhcCCC----eeEEEe---eeHHHHHHHh------cCCcchhcccHHHHHHHHcCcccccCCcccccCCCCCCCC
Q 045621 95 QSLVDFLDNDK----FTFVGT---MDVADMAAAK------YDDEELKTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLS 161 (205)
Q Consensus 95 ~~L~~fL~d~~----i~kvGv---~Dl~~la~~~------lg~~~~~~~gL~~Lv~~~lg~~l~K~~~v~~SnW~~rpLs 161 (205)
+.|.+|+.+.- ...||+ ||++.+.+.. +..+.+...+|..+++.++. .+-+ .+.
T Consensus 90 ~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~~l~~l~~~~~p-~~~~------------~i~ 156 (194)
T 2gbz_A 90 AQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVSTIKELARRWAP-AVAS------------GFA 156 (194)
T ss_dssp HHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCG-GGGT------------TCC
T ss_pred HHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHHHHHHHHHHhCH-HHHh------------CCC
Confidence 56777787632 347898 9998776431 11222233456677776532 1111 022
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHcCCCC
Q 045621 162 KQQIRYAAIDAFVSFKLAIELKKEIIALPKP 192 (205)
Q Consensus 162 ~~Qi~YAA~DA~~~~~I~~~L~~~~~~~p~~ 192 (205)
..+-+=|..||.++.+++..+++....+|.+
T Consensus 157 ~~~~H~Al~Da~ata~ll~~~~~~~~~~~~~ 187 (194)
T 2gbz_A 157 KSSAHTALSDVRDSIDELRHYRQFMGTLGGD 187 (194)
T ss_dssp CCSCCSHHHHHHHHHHHHHHHHTTSHHHHC-
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhccCCCC
Confidence 2234668999999999999999884334433
No 27
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=51.70 E-value=11 Score=38.13 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=46.3
Q ss_pred cHHHHHHHHcCc-ccccCCcccccCCCCCCCCH---HHHHHHHhhHHHHHHHHHHHHHh-HHcCCCCCcc
Q 045621 131 GLKRLVLKFLHV-EMEKSKRITLSKWDVNNLSK---QQIRYAAIDAFVSFKLAIELKKE-IIALPKPTTF 195 (205)
Q Consensus 131 gL~~Lv~~~lg~-~l~K~~~v~~SnW~~rpLs~---~Qi~YAA~DA~~~~~I~~~L~~~-~~~~p~~~~~ 195 (205)
||.++++..+|. .++|..+=.+..-......+ +=+.|.|.|+.+.++||.++.-. .+.-|-|-++
T Consensus 288 SL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F~ercPHPVsf 357 (1172)
T 3ikm_A 288 SLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERCPHPVTL 357 (1172)
T ss_dssp HHHHHHTCSSCSCS--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSHHH
T ss_pred CHHHHHHHhCCCcccChhhHhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCchhH
Confidence 799999999996 89998653333333322211 23789999999999999999988 7777777654
No 28
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=49.76 E-value=53 Score=24.82 Aligned_cols=78 Identities=18% Similarity=0.112 Sum_probs=46.1
Q ss_pred HHHHHhhcCC----CeeEEEe---eeHHHHHHHh------cCCcchhcccHHHHHHHHcCcccccCCcccccCCCCCCCC
Q 045621 95 QSLVDFLDND----KFTFVGT---MDVADMAAAK------YDDEELKTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLS 161 (205)
Q Consensus 95 ~~L~~fL~d~----~i~kvGv---~Dl~~la~~~------lg~~~~~~~gL~~Lv~~~lg~~l~K~~~v~~SnW~~rpLs 161 (205)
+.|.+|+.+- +.+.||+ ||++.+.+.. +..+.+.-..|+.+++..+.. +.+ .+.
T Consensus 86 ~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p~-~~~------------~i~ 152 (180)
T 2igi_A 86 LATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPE-ILD------------GFT 152 (180)
T ss_dssp HHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCGG-GGG------------GSC
T ss_pred HHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhChH-hhh------------CCC
Confidence 5677777751 3467888 9998776531 111111112566677765431 111 111
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Q 045621 162 KQQIRYAAIDAFVSFKLAIELKKE 185 (205)
Q Consensus 162 ~~Qi~YAA~DA~~~~~I~~~L~~~ 185 (205)
..+-+=|..||.++.+++..+.+.
T Consensus 153 ~~~~H~Al~Da~ata~l~~~~~~~ 176 (180)
T 2igi_A 153 KQGTHQAMDDIRESVAELAYYREH 176 (180)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCcCcHHHHHHHHHHHHHHHHH
Confidence 223466899999999999988764
No 29
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=44.27 E-value=17 Score=31.86 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=44.6
Q ss_pred eeHHHHHHHhcCCcchhcccHHHHHHHHcCcc-cccCCcccccCCCCCCCCHHHHHHHHhhHHHHHHHHHHH
Q 045621 112 MDVADMAAAKYDDEELKTFGLKRLVLKFLHVE-MEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIEL 182 (205)
Q Consensus 112 ~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~-l~K~~~v~~SnW~~rpLs~~Qi~YAA~DA~~~~~I~~~L 182 (205)
+|+-.+++. +....+.+.+|+++++++||.. .+-++. +.+|-. .=...=++|.-.||...+.|+.++
T Consensus 268 lD~~~~~k~-~~~~~l~sysL~~Va~~~Lg~~K~d~~~~--i~~~~~-~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 268 LDYLDLYKK-FAFTNLPSFSLESVAQHETKKGKLPYDGP--INKLRE-TNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp CCHHHHHHH-HTCCCCSCCSHHHHHHHHHSCCCCCCSSC--GGGHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEHHHHHhh-cCcCcccCCCHHHHHHHHhCCCCCCcHHH--HHHHHH-hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 898888875 2222246899999999999953 332233 333322 011234789999999999999985
No 30
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=39.04 E-value=36 Score=28.83 Aligned_cols=58 Identities=7% Similarity=-0.036 Sum_probs=36.1
Q ss_pred eeHHHHHHHhcCCcch----hcccHHHHHHHHcCcccccCCcccccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhHH
Q 045621 112 MDVADMAAAKYDDEEL----KTFGLKRLVLKFLHVEMEKSKRITLSKWDVNNLSKQQIRYAAIDAFVSFKLAIELKKEII 187 (205)
Q Consensus 112 ~Dl~~la~~~lg~~~~----~~~gL~~Lv~~~lg~~l~K~~~v~~SnW~~rpLs~~Qi~YAA~DA~~~~~I~~~L~~~~~ 187 (205)
+|+..+++..++.... .+.+|..|++. +|...... -+-|..||.++.+|+.++.+...
T Consensus 149 iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~~-~gi~~~~~-----------------~HrAl~DA~ata~l~~~l~~~~~ 210 (308)
T 3cg7_A 149 INLYKIFTNEMDRMGPKELSATTNIGKMNEY-YDLPTIGR-----------------AHDAMDDCLNIATILQRMINMGA 210 (308)
T ss_dssp EEHHHHHHHHHHHHCCCCCCCCSHHHHHHHH-TTCCCCSC-----------------TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred eeHHHHHHHHhccccccccccCcCHHHHHHH-cCCCCCCC-----------------CcCHHHHHHHHHHHHHHHHHcCC
Confidence 5666666543321100 14568888754 56655432 13388999999999999987643
No 31
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=38.25 E-value=98 Score=24.43 Aligned_cols=24 Identities=8% Similarity=-0.129 Sum_probs=19.5
Q ss_pred HHHHhhHHHHHHHHHHHHHhHHcC
Q 045621 166 RYAAIDAFVSFKLAIELKKEIIAL 189 (205)
Q Consensus 166 ~YAA~DA~~~~~I~~~L~~~~~~~ 189 (205)
+-|..||..+.+|+.++.+.+..+
T Consensus 194 H~Al~DA~~ta~l~~~l~~~g~~~ 217 (224)
T 2xri_A 194 HSGIDDCKNIANIMKTLAYRGFIF 217 (224)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cChHHHHHHHHHHHHHHHHcCCEE
Confidence 348899999999999999875443
No 32
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=29.31 E-value=68 Score=30.81 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=45.3
Q ss_pred eeHHHHHHHhcCCcchhcccHHHHHHHHcCccccc-CCccccc-CCCCCCCCHHHHHHHHhhHHHHHHHHHHHH
Q 045621 112 MDVADMAAAKYDDEELKTFGLKRLVLKFLHVEMEK-SKRITLS-KWDVNNLSKQQIRYAAIDAFVSFKLAIELK 183 (205)
Q Consensus 112 ~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l~K-~~~v~~S-nW~~rpLs~~Qi~YAA~DA~~~~~I~~~L~ 183 (205)
+|+-.+++.... +.+.+|+++++++||..-.. +.. .+. -|...+--..=+.|...||...+.|+.++.
T Consensus 258 lDl~~~~k~~~~---l~sysL~~Va~~~Lg~~K~dv~~~-~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 258 FDLYPVIRRTIN---LPTYTLEAVYEAVFGKPKEKVYAE-EIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp EEHHHHHHHHSC---CSCCCHHHHHHHHHCCCCCCCCHH-HHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHhcC---cCcCCHHHHHHHHhCCCCCccCHH-HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 788877766432 35889999999999963221 000 122 355443114558999999999999987764
No 33
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=28.77 E-value=1.3e+02 Score=19.94 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=28.0
Q ss_pred CceeEEEeCCcEEEEEEcCCHHHHHHHHHHHHHh
Q 045621 31 HNIWGINFGEDYFVTTVTSRASDVDRWIARTINV 64 (205)
Q Consensus 31 ~~~y~V~f~g~~I~vtvT~~~~~v~~wi~~~~~~ 64 (205)
...+.|...++......+++.++.++|+..+...
T Consensus 58 ~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 91 (103)
T 3rcp_A 58 NTRMELIIPGEQHFYMKAVNAAERQRWLVALGSS 91 (103)
T ss_dssp SSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTT
T ss_pred CceEEEEeCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 4467777777788888899999999999988764
No 34
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.36 E-value=1.4e+02 Score=20.16 Aligned_cols=33 Identities=6% Similarity=0.204 Sum_probs=27.3
Q ss_pred ceeEEEeCCcEEEEEEcCCHHHHHHHHHHHHHh
Q 045621 32 NIWGINFGEDYFVTTVTSRASDVDRWIARTINV 64 (205)
Q Consensus 32 ~~y~V~f~g~~I~vtvT~~~~~v~~wi~~~~~~ 64 (205)
..+.|...+.......+++.++.++|+..+...
T Consensus 67 ~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~ 99 (107)
T 2cof_A 67 YSFRILHKGEELAKLEAKSSEEMGHWLGLLLSE 99 (107)
T ss_dssp CEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence 466777777777888899999999999998764
No 35
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=26.03 E-value=94 Score=27.68 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=40.6
Q ss_pred eeHHHHHHHhcCC-cchhcccHHHHHHHHcCcccccCCcccccC-CCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhH
Q 045621 112 MDVADMAAAKYDD-EELKTFGLKRLVLKFLHVEMEKSKRITLSK-WDVNNLSKQQIRYAAIDAFVSFKLAIELKKEI 186 (205)
Q Consensus 112 ~Dl~~la~~~lg~-~~~~~~gL~~Lv~~~lg~~l~K~~~v~~Sn-W~~rpLs~~Qi~YAA~DA~~~~~I~~~L~~~~ 186 (205)
+|+..+|.. ... ......+|..+...+-.... .+..|...+ -....-..++.+=|+-|||..-.+|.+|....
T Consensus 323 ~DTK~la~~-~~~~~~~~~~sL~~l~~~l~~~~~-~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l 397 (430)
T 2a1r_A 323 LDTKLMAST-QPFKDIINNTSLAELEKRLKETPF-NPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 397 (430)
T ss_dssp EEHHHHHTS-TTTTTTCSCCSHHHHHHHTTSTTC-CCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHhhhc-cchhhccCCCCHHHHHHHHHhCCC-CCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 888887742 211 11245789998776532211 122232211 11111123566779999999999999998873
No 36
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=23.55 E-value=1.7e+02 Score=19.61 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=26.7
Q ss_pred ceeEEEeCCcEEEEEEcCCHHHHHHHHHHHHHh
Q 045621 32 NIWGINFGEDYFVTTVTSRASDVDRWIARTINV 64 (205)
Q Consensus 32 ~~y~V~f~g~~I~vtvT~~~~~v~~wi~~~~~~ 64 (205)
..+.|...+.......+.+.++.++|+..+...
T Consensus 69 ~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 101 (109)
T 1wgq_A 69 KVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEG 101 (109)
T ss_dssp SEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence 467777677677778899999999999988764
No 37
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase, complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella pneumoniae subsp} SCOP: a.132.1.4 PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Probab=22.92 E-value=44 Score=27.90 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=33.3
Q ss_pred CCCCCCCCHHHHH-HHHhhHHHHHHHHHHHHHhHHcCCCCCcccc
Q 045621 154 KWDVNNLSKQQIR-YAAIDAFVSFKLAIELKKEIIALPKPTTFDA 197 (205)
Q Consensus 154 nW~~rpLs~~Qi~-YAA~DA~~~~~I~~~L~~~~~~~p~~~~~~~ 197 (205)
.|....|+.+|++ |+..|.||+..+-+.+....-..|+++....
T Consensus 32 ~l~~G~L~~e~~r~yv~qdy~Yl~~f~r~~A~i~ak~~d~e~rr~ 76 (258)
T 3hlx_A 32 AMHNGNATREQIQGWVANRFYYQTTIPLKDAAIMANCPDAQTRRK 76 (258)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 5666789999977 6778999998888777777666777665443
No 38
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=22.63 E-value=82 Score=24.02 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=30.5
Q ss_pred CCCCceeEEEeCCcEEEEEEcCCHHHHHHHHHHHHHhh
Q 045621 28 PLGHNIWGINFGEDYFVTTVTSRASDVDRWIARTINVH 65 (205)
Q Consensus 28 ~~~~~~y~V~f~g~~I~vtvT~~~~~v~~wi~~~~~~~ 65 (205)
|...+++.|...+...++.-+.++.....|+.++..-.
T Consensus 92 PD~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~ 129 (136)
T 1v5m_A 92 PEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCV 129 (136)
T ss_dssp CCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCccceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhc
Confidence 45677788887777777778899999999999986543
No 39
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=22.61 E-value=1.5e+02 Score=19.64 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=25.9
Q ss_pred CCceeEEEeCCcEEEEEEcCCHHHHHHHHHHHHH
Q 045621 30 GHNIWGINFGEDYFVTTVTSRASDVDRWIARTIN 63 (205)
Q Consensus 30 ~~~~y~V~f~g~~I~vtvT~~~~~v~~wi~~~~~ 63 (205)
....+.|...+.......+.+.++.++|+..+..
T Consensus 73 ~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~ 106 (109)
T 2i5f_A 73 EENLFEIITADEVHYFLQAATPKERTEWIKAIQM 106 (109)
T ss_dssp CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHH
T ss_pred CceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence 3456777776666566778999999999998764
No 40
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=21.57 E-value=1.7e+02 Score=19.70 Aligned_cols=33 Identities=9% Similarity=0.105 Sum_probs=26.1
Q ss_pred ceeEEEeCCcEEEEEEcCCHHHHHHHHHHHHHh
Q 045621 32 NIWGINFGEDYFVTTVTSRASDVDRWIARTINV 64 (205)
Q Consensus 32 ~~y~V~f~g~~I~vtvT~~~~~v~~wi~~~~~~ 64 (205)
..+.|...+.......++++++.++|+..+...
T Consensus 77 ~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 109 (112)
T 3aj4_A 77 CMLQIVCRDGKTISLCAESTDDCLAWKFTLQDS 109 (112)
T ss_dssp GEEEEEETTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence 367776666677778899999999999988653
No 41
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=21.14 E-value=1e+02 Score=27.94 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=16.8
Q ss_pred HHHHhhHHHHHHHHHHHHHhH
Q 045621 166 RYAAIDAFVSFKLAIELKKEI 186 (205)
Q Consensus 166 ~YAA~DA~~~~~I~~~L~~~~ 186 (205)
+=|..||+++..|+.++.+..
T Consensus 181 HrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 181 HDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp -CTTHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHhC
Confidence 458899999999999887653
No 42
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.97 E-value=1.3e+02 Score=20.77 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=25.8
Q ss_pred CceeEEEeCCcEEEEEEcCCHHHHHHHHHHHHHh
Q 045621 31 HNIWGINFGEDYFVTTVTSRASDVDRWIARTINV 64 (205)
Q Consensus 31 ~~~y~V~f~g~~I~vtvT~~~~~v~~wi~~~~~~ 64 (205)
...+.|...+.......+.+.++.++|+..+...
T Consensus 89 ~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~ 122 (129)
T 1x1g_A 89 GNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL 122 (129)
T ss_dssp SSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred CceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 3456666666566667789999999999998764
Done!