BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045628
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 84/131 (64%), Gaps = 1/131 (0%)
Query: 7 LRRQLASMRQSLFDQGHLDEQFILLEELQDDA-NPNFVEEVVTLHYRDSARLITTIERAL 65
LR QL ++ S+F QG +DEQF L+ LQD+ P FV EVVTL D+ R+I I L
Sbjct: 6 LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLL 65
Query: 66 EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA 125
E+ ++F+K+D Y+HQ KGSS S+GA+KVK QFR++C+ + +GC+ +++ D+
Sbjct: 66 EQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFY 125
Query: 126 TLRRKLEAYFQ 136
LR K + Q
Sbjct: 126 DLRNKFQTMLQ 136
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 82/127 (64%), Gaps = 1/127 (0%)
Query: 7 LRRQLASMRQSLFDQGHLDEQFILLEELQDDA-NPNFVEEVVTLHYRDSARLITTIERAL 65
LR QL ++ S+F G +DEQF L+ LQ+D P FV EVVTL D+ R+I+ + L
Sbjct: 6 LREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISELAALL 65
Query: 66 EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA 125
++ +DF+K+D Y+HQ KGSS S+GA+KVK QFR+ C+ N +GC+ +++ ++
Sbjct: 66 DQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMALAVVRNEFY 125
Query: 126 TLRRKLE 132
LR K +
Sbjct: 126 DLRNKFQ 132
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer
Protein Mthpt1 From Medicago Truncatula
Length = 153
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 86/128 (67%)
Query: 6 QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERAL 65
Q+RRQ +S+F +G LD QF+ L++LQD+ NP FV EVV+L + DS R++ + A+
Sbjct: 5 QMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAV 64
Query: 66 EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA 125
++ +DF K+D ++HQFKGSS SIGA++VK FR +CE N + C + Q +K++Y
Sbjct: 65 DQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYL 124
Query: 126 TLRRKLEA 133
++ KLE
Sbjct: 125 LVKNKLET 132
>pdb|4EUK|B Chain B, Crystal Structure
Length = 159
Score = 106 bits (264), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 90/131 (68%)
Query: 6 QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERAL 65
Q ++ L +SLF +G LD QF+ L++LQD++NP+FV +VVTL ++DS R++ + +L
Sbjct: 10 QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSL 69
Query: 66 EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA 125
++ +DF K+D ++HQ KGSS+SIGA++VK FR +CE N E C + Q +K++Y
Sbjct: 70 DQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYY 129
Query: 126 TLRRKLEAYFQ 136
++ +LE F+
Sbjct: 130 LVKNRLETLFK 140
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 41 NFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKG----SSTSIGAKKVKA 96
N + E++TL ++ A+++ +A+ P+D LD + F G T IG VK
Sbjct: 183 NPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 242
Query: 97 ESTQFREYCEAG 108
Q E G
Sbjct: 243 ALLQEMPPWEGG 254
>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With
L-Propargylglycine
Length = 406
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 41 NFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKG----SSTSIGAKKVKA 96
N + E++TL ++ A+++ +A+ P+D LD + F G T IG VK
Sbjct: 181 NPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 240
Query: 97 ESTQFREYCEAG 108
Q E G
Sbjct: 241 ALLQEMPPWEGG 252
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 41 NFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKG----SSTSIGAKKVKA 96
N + E++TL ++ A+++ +A+ P+D LD + F G T IG VK
Sbjct: 181 NPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 240
Query: 97 ESTQFREYCEAG 108
Q E G
Sbjct: 241 ALLQEMPPWEGG 252
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
PERSULFIDE Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
PERSELENIDE Intermediate (Residue Csz)
Length = 406
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 41 NFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKG----SSTSIGAKKVKA 96
N + E++TL ++ A+++ +A+ P+D LD + F G T IG VK
Sbjct: 181 NPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 240
Query: 97 ESTQFREYCEAG 108
Q E G
Sbjct: 241 ALLQEMPPWEGG 252
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 28.9 bits (63), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 83 KGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA-TLRRKLEAYFQQALP 140
K + GA+K A+ RE A NG+ ++TF LK+ LR+KL+ +F + P
Sbjct: 146 KADKLASGARK--AQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202
>pdb|2XPN|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
Encephalitozoon Cuniculi, Form I
pdb|2XPO|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
Encephalitozoon Cuniculi, Form Ii
pdb|2XPO|C Chain C, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
Encephalitozoon Cuniculi, Form Ii
pdb|2XPP|A Chain A, Crystal Structure Of A Spt6-Iws1(Spn1) Complex From
Encephalitozoon Cuniculi, Form Iii
Length = 145
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 13 SMRQSLFDQGHLDEQFILLEELQDDANPNF 42
++++SL D+G LDE LE L D + PN
Sbjct: 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNI 81
>pdb|2XPL|A Chain A, Crystal Structure Of Iws1(Spn1) Conserved Domain From
Encephalitozoon Cuniculi
pdb|2XPL|B Chain B, Crystal Structure Of Iws1(Spn1) Conserved Domain From
Encephalitozoon Cuniculi
Length = 148
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 13 SMRQSLFDQGHLDEQFILLEELQDDANPNF 42
++++SL D+G LDE LE L D + PN
Sbjct: 55 ALQESLLDEGILDEIKGWLEPLPDKSMPNI 84
>pdb|2LXF|A Chain A, Solution Nmr Structure Of A Potential Acylphosphatase From
Giardia Lamblia, Seattle Structural Genomics Center For
Infectious Disease Target Gilaa.01396.A
Length = 121
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 40 PNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAEST 99
P+ E+V TL YR + ++ R K D L GY+ + S S + K +
Sbjct: 27 PSSSEDVTTLCYRVTGKVQGVFFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVD 86
Query: 100 QFREYCEAGNGEGCMKTFQL 119
F +Y G+ + +K +
Sbjct: 87 AFVKYLHKGSPKSVVKKVSI 106
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 75 LDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTF 117
++G + Q G+S + K +K +++ RE E + CMK F
Sbjct: 51 MEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDF 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,945,416
Number of Sequences: 62578
Number of extensions: 146343
Number of successful extensions: 376
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 19
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)