Query 045628
Match_columns 142
No_of_seqs 129 out of 650
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4747 Two-component phosphor 99.9 7.4E-22 1.6E-26 142.8 13.0 133 6-139 7-139 (150)
2 COG2198 ArcB FOG: HPt domain [ 99.7 9.6E-16 2.1E-20 108.3 11.8 96 38-135 20-118 (122)
3 PF01627 Hpt: Hpt domain; Int 99.7 7.2E-16 1.6E-20 101.7 9.4 83 45-129 1-89 (90)
4 smart00073 HPT Histidine Phosp 99.5 1.1E-14 2.4E-19 96.3 5.5 86 44-132 1-86 (87)
5 cd00088 HPT Histidine Phosphot 99.4 5.7E-13 1.2E-17 89.6 8.1 84 44-129 2-91 (94)
6 TIGR02956 TMAO_torS TMAO reduc 99.3 8.4E-12 1.8E-16 112.5 10.9 93 38-134 876-968 (968)
7 PRK10618 phosphotransfer inter 99.1 4.3E-10 9.3E-15 102.3 9.7 83 44-128 810-892 (894)
8 PRK11091 aerobic respiration c 99.1 1.5E-09 3.4E-14 96.4 11.4 100 38-139 678-777 (779)
9 PRK11107 hybrid sensory histid 98.8 1.9E-07 4E-12 83.9 13.7 98 37-136 820-918 (919)
10 PRK11466 hybrid sensory histid 98.7 1.3E-07 2.8E-12 85.2 9.7 91 38-139 820-910 (914)
11 COG0643 CheA Chemotaxis protei 98.2 1.3E-05 2.7E-10 71.9 10.3 90 40-129 3-101 (716)
12 PRK10547 chemotaxis protein Ch 98.1 2.4E-05 5.3E-10 69.7 9.8 63 44-106 4-72 (670)
13 PRK09959 hybrid sensory histid 97.6 0.0021 4.5E-08 60.0 14.2 96 38-135 1097-1193(1197)
14 PRK15347 two component system 96.8 0.0069 1.5E-07 54.7 8.4 77 46-127 838-914 (921)
15 PF13779 DUF4175: Domain of un 91.0 5 0.00011 37.2 11.9 118 6-128 447-574 (820)
16 TIGR02302 aProt_lowcomp conser 89.9 10 0.00022 35.3 12.9 117 6-128 478-604 (851)
17 PF07743 HSCB_C: HSCB C-termin 88.6 4.4 9.6E-05 25.8 7.3 51 31-83 17-67 (78)
18 TIGR03042 PS_II_psbQ_bact phot 83.6 12 0.00025 27.4 8.0 74 52-137 46-140 (142)
19 TIGR00984 3a0801s03tim44 mitoc 82.1 5.7 0.00012 33.5 6.7 87 3-108 206-293 (378)
20 TIGR00714 hscB Fe-S protein as 80.1 11 0.00025 27.6 7.0 66 59-135 88-153 (157)
21 PF05757 PsbQ: Oxygen evolving 73.6 13 0.00028 28.7 5.9 78 51-130 105-200 (202)
22 PRK01356 hscB co-chaperone Hsc 70.5 28 0.00062 25.8 7.1 56 72-136 108-163 (166)
23 cd08323 CARD_APAF1 Caspase act 70.3 27 0.00058 23.2 6.2 66 12-81 17-83 (86)
24 PRK03578 hscB co-chaperone Hsc 69.5 30 0.00064 26.0 7.0 53 72-133 116-169 (176)
25 PRK01773 hscB co-chaperone Hsc 68.9 32 0.00069 25.8 7.0 76 39-133 90-165 (173)
26 PF08900 DUF1845: Domain of un 67.6 38 0.00082 26.2 7.5 55 83-137 31-91 (217)
27 PLN02956 PSII-Q subunit 62.8 67 0.0014 24.5 8.8 78 48-130 86-184 (185)
28 COG3046 Uncharacterized protei 62.5 20 0.00044 30.9 5.4 67 39-111 226-292 (505)
29 TIGR03042 PS_II_psbQ_bact phot 59.6 67 0.0014 23.5 8.6 61 30-92 54-114 (142)
30 PF05396 Phage_T7_Capsid: Phag 55.5 73 0.0016 22.7 6.9 44 38-83 44-87 (123)
31 PF08858 IDEAL: IDEAL domain; 54.6 36 0.00078 18.9 5.5 35 43-81 2-36 (37)
32 PRK05014 hscB co-chaperone Hsc 54.6 81 0.0018 23.4 7.0 39 94-133 126-164 (171)
33 KOG3232 Vacuolar assembly/sort 52.8 61 0.0013 24.7 6.0 38 93-130 94-131 (203)
34 PF09280 XPC-binding: XPC-bind 52.0 20 0.00044 22.1 2.9 35 27-62 9-43 (59)
35 PRK03636 hypothetical protein; 49.0 66 0.0014 24.3 5.8 37 43-83 138-174 (179)
36 PF06248 Zw10: Centromere/kine 48.7 1.9E+02 0.0042 25.5 10.5 23 114-136 149-171 (593)
37 PF14615 Rsa3: Ribosome-assemb 48.4 56 0.0012 19.3 4.7 41 45-88 5-45 (47)
38 TIGR03761 ICE_PFL4669 integrat 47.5 1.3E+02 0.0028 23.5 7.3 53 85-137 31-89 (216)
39 PF12554 MOZART1: Mitotic-spin 47.4 59 0.0013 19.3 4.2 36 13-49 9-46 (48)
40 COG1447 CelC Phosphotransferas 46.8 86 0.0019 21.7 5.6 39 103-141 28-66 (105)
41 COG2991 Uncharacterized protei 46.0 5.5 0.00012 25.9 -0.4 20 80-99 27-46 (77)
42 PRK03057 hypothetical protein; 44.9 76 0.0016 24.0 5.5 37 45-83 131-173 (180)
43 PF03993 DUF349: Domain of Unk 42.4 48 0.001 20.6 3.6 62 43-126 7-68 (77)
44 TIGR00465 ilvC ketol-acid redu 41.5 61 0.0013 26.4 4.9 59 73-131 209-267 (314)
45 PF07870 DUF1657: Protein of u 40.3 79 0.0017 18.7 4.4 36 99-134 14-49 (50)
46 KOG2580 Mitochondrial import i 40.0 73 0.0016 27.5 5.2 66 6-81 283-350 (459)
47 PF04852 DUF640: Protein of un 38.2 47 0.001 24.0 3.3 35 22-56 92-131 (132)
48 PF00512 HisKA: His Kinase A ( 38.1 87 0.0019 18.5 7.2 57 74-138 5-63 (68)
49 KOG2280 Vacuolar assembly/sort 37.8 3.5E+02 0.0075 25.4 9.7 92 23-128 686-778 (829)
50 PLN02407 diphosphomevalonate d 36.7 66 0.0014 26.9 4.4 33 45-79 223-256 (343)
51 smart00388 HisKA His Kinase A 36.6 79 0.0017 17.6 7.1 55 74-136 5-59 (66)
52 KOG2424 Protein involved in tr 35.9 70 0.0015 24.5 4.1 24 86-111 147-170 (195)
53 PF06367 Drf_FH3: Diaphanous F 35.1 1.8E+02 0.004 21.4 8.6 99 18-127 68-171 (197)
54 PF04282 DUF438: Family of unk 35.0 1.2E+02 0.0027 19.4 4.8 49 31-79 6-55 (71)
55 PF02561 FliS: Flagellar prote 33.2 1.6E+02 0.0035 20.2 9.8 82 45-128 20-119 (122)
56 KOG2833 Mevalonate pyrophospha 33.0 89 0.0019 26.2 4.5 33 44-78 221-254 (395)
57 PF13779 DUF4175: Domain of un 31.8 4.3E+02 0.0093 24.8 9.2 70 52-138 449-519 (820)
58 PF04722 Ssu72: Ssu72-like pro 31.2 77 0.0017 24.4 3.7 37 86-123 145-182 (195)
59 PF08216 CTNNBL: Catenin-beta- 30.9 31 0.00067 24.1 1.4 60 2-69 40-100 (108)
60 PRK13916 plasmid segregation p 30.7 75 0.0016 21.3 3.1 29 27-55 20-48 (97)
61 PF12854 PPR_1: PPR repeat 30.2 55 0.0012 17.3 2.1 23 98-120 11-33 (34)
62 KOG2716 Polymerase delta-inter 29.4 36 0.00078 26.8 1.7 52 49-100 48-99 (230)
63 cd00082 HisKA Histidine Kinase 29.1 1.1E+02 0.0023 16.7 7.6 55 74-136 7-62 (65)
64 PF02845 CUE: CUE domain; Int 28.4 1.1E+02 0.0024 16.9 3.8 35 27-61 4-38 (42)
65 PF07361 Cytochrom_B562: Cytoc 27.6 1.1E+02 0.0023 20.8 3.7 34 87-120 58-91 (103)
66 PF07014 Hs1pro-1_C: Hs1pro-1 27.5 3.2E+02 0.0069 21.7 9.4 64 42-116 54-117 (261)
67 KOG4747 Two-component phosphor 27.4 1.9E+02 0.004 21.4 5.0 60 38-100 11-70 (150)
68 TIGR00601 rad23 UV excision re 27.3 94 0.002 26.2 3.9 35 27-62 256-290 (378)
69 TIGR00444 mazG MazG family pro 27.1 1.7E+02 0.0037 23.2 5.2 43 90-132 129-172 (248)
70 PF03981 Ubiq_cyt_C_chap: Ubiq 26.7 1.7E+02 0.0038 20.3 4.8 57 28-87 21-79 (141)
71 PF05626 DUF790: Protein of un 26.2 86 0.0019 26.5 3.5 97 38-135 24-125 (379)
72 PF01535 PPR: PPR repeat; Int 25.8 91 0.002 15.0 2.5 23 100-122 6-28 (31)
73 smart00188 IL10 Interleukin-10 25.7 2.6E+02 0.0057 20.2 9.8 51 4-56 5-60 (137)
74 PF14223 UBN2: gag-polypeptide 25.4 2.1E+02 0.0046 19.1 5.6 77 3-82 24-106 (119)
75 PLN02956 PSII-Q subunit 25.3 3.1E+02 0.0068 20.9 6.8 45 41-87 109-153 (185)
76 KOG1142 Transcription initiati 25.1 1.2E+02 0.0026 24.4 3.9 25 40-64 178-202 (258)
77 PTZ00436 60S ribosomal protein 25.1 2.8E+02 0.0061 23.0 6.1 49 10-59 101-150 (357)
78 PF04400 DUF539: Protein of un 25.1 8.6 0.00019 22.6 -1.9 19 81-99 7-25 (45)
79 PF00435 Spectrin: Spectrin re 25.0 1.8E+02 0.0038 18.0 6.3 29 107-135 72-100 (105)
80 COG3923 PriC Primosomal replic 24.4 1.9E+02 0.0041 21.8 4.6 36 45-82 44-79 (175)
81 PF02153 PDH: Prephenate dehyd 24.1 3.5E+02 0.0075 21.0 7.2 39 38-78 210-255 (258)
82 TIGR01240 mevDPdecarb diphosph 24.1 1.5E+02 0.0032 24.2 4.4 32 46-79 201-232 (305)
83 COG4865 Glutamate mutase epsil 24.0 55 0.0012 27.8 1.9 39 16-54 64-102 (485)
84 COG0783 Dps DNA-binding ferrit 23.8 2.3E+02 0.005 20.8 5.1 77 39-137 43-124 (156)
85 PRK14135 recX recombination re 23.1 3.6E+02 0.0078 20.9 6.5 36 18-53 85-120 (263)
86 PRK10859 membrane-bound lytic 23.0 4.8E+02 0.01 22.3 8.5 72 4-81 237-312 (482)
87 COG4623 Predicted soluble lyti 22.7 3.5E+02 0.0076 23.4 6.4 118 6-127 220-350 (473)
88 PF10018 Med4: Vitamin-D-recep 22.4 3.4E+02 0.0073 20.2 6.1 21 68-88 79-99 (188)
89 cd08326 CARD_CASP9 Caspase act 22.3 2.3E+02 0.0051 18.4 5.6 61 13-77 20-81 (84)
90 PF08657 DASH_Spc34: DASH comp 22.2 4.1E+02 0.0089 21.2 7.1 62 73-134 134-199 (259)
91 COG2178 Predicted RNA-binding 22.0 3.8E+02 0.0083 20.8 6.1 42 93-134 28-69 (204)
92 PF04280 Tim44: Tim44-like dom 21.8 1.6E+02 0.0035 20.4 3.8 54 39-107 12-65 (147)
93 COG2747 FlgM Negative regulato 21.1 1.4E+02 0.0031 20.2 3.2 24 54-77 59-84 (93)
94 PF13812 PPR_3: Pentatricopept 21.0 1.3E+02 0.0027 14.8 3.2 23 100-122 7-29 (34)
95 PF09670 Cas_Cas02710: CRISPR- 21.0 5E+02 0.011 21.7 9.8 79 38-119 115-194 (379)
96 TIGR00756 PPR pentatricopeptid 21.0 1.2E+02 0.0026 14.6 3.1 23 100-122 6-28 (35)
97 PRK08818 prephenate dehydrogen 21.0 2.4E+02 0.0052 23.7 5.2 39 42-86 228-266 (370)
98 PRK08540 adenylosuccinate lyas 20.6 5.4E+02 0.012 21.9 7.4 62 3-64 24-88 (449)
99 PF13171 DUF4004: Protein of u 20.5 4.1E+02 0.0089 20.5 8.5 95 29-128 57-153 (199)
100 PF08822 DUF1804: Protein of u 20.3 3.8E+02 0.0082 20.1 7.2 66 64-131 43-115 (165)
101 PF14276 DUF4363: Domain of un 20.0 3E+02 0.0064 18.7 10.2 83 43-127 17-110 (121)
No 1
>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]
Probab=99.88 E-value=7.4e-22 Score=142.83 Aligned_cols=133 Identities=51% Similarity=0.826 Sum_probs=127.1
Q ss_pred HHHHHHHHHHhcccccCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhccc
Q 045628 6 QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGS 85 (142)
Q Consensus 6 ~~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGs 85 (142)
.+....++|-.+++++|++|++|.+|++|+++..|+|+.+++..|++++++.|..++.|+..+- |+..+...-|.+|||
T Consensus 7 ~~q~~~~d~~~sl~~qgild~qF~qlq~lqD~~~p~fv~ev~~~fF~~s~~~i~~~r~ald~~~-d~k~~~~~~hqlkgs 85 (150)
T KOG4747|consen 7 SMQRDVSDYTKSLFDQGILDSQFLQLQELQDDSSPDFVEEVVGLFFEDSERLINNLRLALDCER-DFKKLGSHVHQLKGS 85 (150)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HHHHHHHHHHHccCc
Confidence 4667889999999999999999999999999999999999999999999999999999998873 599999999999999
Q ss_pred ccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045628 86 STSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQAL 139 (142)
Q Consensus 86 s~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~ 139 (142)
|.+|||.++..+|..+...|+.++.+++...+++++.+|..+...|+++++.+|
T Consensus 86 sssIGa~kvk~~c~~~~~~~~~~n~egcvr~l~~v~ie~~~lkkkL~~~f~L~r 139 (150)
T KOG4747|consen 86 SSSIGALKVKKVCVGFNEFCEAGNIEGCVRCLQQVKIEYSLLKKKLETLFQLER 139 (150)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccchhHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998765
No 2
>COG2198 ArcB FOG: HPt domain [Signal transduction mechanisms]
Probab=99.68 E-value=9.6e-16 Score=108.33 Aligned_cols=96 Identities=20% Similarity=0.342 Sum_probs=87.8
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHc-CChhhHHHH
Q 045628 38 ANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEA-GNGEGCMKT 116 (142)
Q Consensus 38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~-~~~~~~~~~ 116 (142)
|+++++.+++..|+++.+..+..+..++..+| +..+.+.||+|||+|+++|+..|+..|.++|..++. ...+.....
T Consensus 20 ~~~~~~~~ll~~f~~~~~~~l~~l~~~l~~~d--~~~~~~~aH~lkg~a~~lg~~~L~~~~~~lE~~~~~~~~~~~~~~~ 97 (122)
T COG2198 20 GDPDLLRELLAMFLEEAPAQLEQLESALAAED--NDGLARLAHRLKGSAASLGLPALAQLCQQLEDALRSGASLEELEEL 97 (122)
T ss_pred CChHHHHHHHHHHHHHhHHHHHHHHHHHhcCC--cHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 67999999999999999999999999999998 999999999999999999999999999999999999 677799999
Q ss_pred HHHHHHH--HHHHHHHHHHHH
Q 045628 117 FQLLKRD--YATLRRKLEAYF 135 (142)
Q Consensus 117 ~~~l~~~--~~~~~~~L~~~l 135 (142)
+.+++.+ +..+...+.++.
T Consensus 98 i~~l~~~~~~~~~~~~~~~~~ 118 (122)
T COG2198 98 IAELKDELQLDVLALELLTYL 118 (122)
T ss_pred HHHHHHHhcchHHHHHHHHHh
Confidence 9999999 666666555554
No 3
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=99.66 E-value=7.2e-16 Score=101.73 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=72.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHH---hcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhh---HHHHHH
Q 045628 45 EVVTLHYRDSARLITTIERAL---EKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEG---CMKTFQ 118 (142)
Q Consensus 45 ell~~Fl~d~~~~l~~L~~al---~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~---~~~~~~ 118 (142)
+|+..|+++.++.+..|..++ ..+| ++.+.+.+|+|||+++++|+.++..+|..+|..++.++... +...+.
T Consensus 1 ell~~f~~~~~~~~~~l~~~~~~~~~~d--~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~~~~~~~~~ 78 (90)
T PF01627_consen 1 ELLDIFLEEAPEDLEQLEQALQALEQED--WEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEAEELEQLLD 78 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSHHCH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHhh--HHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 689999999999999999999 8777 99999999999999999999999999999999999987777 555556
Q ss_pred HHHHHHHHHHH
Q 045628 119 LLKRDYATLRR 129 (142)
Q Consensus 119 ~l~~~~~~~~~ 129 (142)
.+...++++.+
T Consensus 79 ~l~~~l~~l~~ 89 (90)
T PF01627_consen 79 ELEAMLEQLRQ 89 (90)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 65555555543
No 4
>smart00073 HPT Histidine Phosphotransfer domain. Contains an active histidine residue that mediates phosphotransfer reactions. Domain detected only in eubacteria. This alignment is an extension to that shown in the Cell structure paper.
Probab=99.54 E-value=1.1e-14 Score=96.30 Aligned_cols=86 Identities=19% Similarity=0.199 Sum_probs=73.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 045628 44 EEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRD 123 (142)
Q Consensus 44 ~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~ 123 (142)
++++..|+++.++.+..|..++..+| +..+.+.+|+|||+|+++|+..|..+|..+|..++..... .......+...
T Consensus 1 ~e~~~~f~~~~~~~l~~l~~~~~~~~--~~~l~~~~H~LKG~a~~~g~~~l~~~~~~lE~~~~~~~~~-~~~~~~~l~~~ 77 (87)
T smart00073 1 REELAEFLQSLEEGLLELEKALDAQD--VNEIFRAAHTLKGSAGSLGLQQLAQLCHQLENLLDAARSG-EVELTPDLLDL 77 (87)
T ss_pred ChHHHHHHHHHHHHHHHHHhCcCHhH--HHHHHHHHHhhhhhHHhcCHHHHHHHHHHHHHHHHHHHcC-CCCCCHHHHHH
Confidence 36899999999999999999998887 9999999999999999999999999999999998874433 33566777777
Q ss_pred HHHHHHHHH
Q 045628 124 YATLRRKLE 132 (142)
Q Consensus 124 ~~~~~~~L~ 132 (142)
|.++...|+
T Consensus 78 ~~~~~~~l~ 86 (87)
T smart00073 78 LLELVDVLK 86 (87)
T ss_pred HHHHHHHHc
Confidence 777777654
No 5
>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E. coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are i
Probab=99.44 E-value=5.7e-13 Score=89.64 Aligned_cols=84 Identities=24% Similarity=0.360 Sum_probs=68.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHh----cCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChh--hHHHHH
Q 045628 44 EEVVTLHYRDSARLITTIERALE----KSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGE--GCMKTF 117 (142)
Q Consensus 44 ~ell~~Fl~d~~~~l~~L~~al~----~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~--~~~~~~ 117 (142)
.+++..|+++.++.+..|..++. .+| +..+...+|+|||+++++|+..|...|..+|.+++.+... ......
T Consensus 2 ~~l~~~f~~~~~~~l~~l~~~~~~~~~~~d--~~~l~~~~H~LkGsa~~~G~~~l~~~~~~lE~~~~~~~~~~~~~~~~~ 79 (94)
T cd00088 2 EELLELFLEEAEELLEELERALLELEDAED--LNEIFRAAHTLKGSAASLGLQRLAQLAHQLEDLLDALRDGLEVTPELI 79 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhhhHHhcCChHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 47899999999999999999999 676 9999999999999999999999999999999999985432 333334
Q ss_pred HHHHHHHHHHHH
Q 045628 118 QLLKRDYATLRR 129 (142)
Q Consensus 118 ~~l~~~~~~~~~ 129 (142)
..+...+..+..
T Consensus 80 ~~~~~~~d~l~~ 91 (94)
T cd00088 80 DLLLDALDALKA 91 (94)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 6
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.33 E-value=8.4e-12 Score=112.45 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=86.8
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHH
Q 045628 38 ANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTF 117 (142)
Q Consensus 38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~ 117 (142)
.+++.+.+++..|.++.+..+..|..++..+| +..++..+|+|||+++++|+.++..+|..||..++.++. ....+
T Consensus 876 ~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~d--~~~~~~~~H~lkg~~~~~g~~~l~~~~~~le~~~~~~~~--~~~~~ 951 (968)
T TIGR02956 876 LGVEKVRQLVALFKTSSAEQLEELSAARAVDD--DAQIKKLAHKLKGSAGSLGLTQLTQLCQQLEKQGKTGAL--ELSDI 951 (968)
T ss_pred cCcHHHHHHHHHHHHhhHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcccCCc--chhHH
Confidence 46788999999999999999999999999998 999999999999999999999999999999999999888 45778
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045628 118 QLLKRDYATLRRKLEAY 134 (142)
Q Consensus 118 ~~l~~~~~~~~~~L~~~ 134 (142)
..++..|.++..+|++|
T Consensus 952 ~~l~~~~~~~~~~l~~~ 968 (968)
T TIGR02956 952 DEIKQAWQASKTALDQW 968 (968)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999998864
No 7
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=99.10 E-value=4.3e-10 Score=102.32 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=77.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q 045628 44 EEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRD 123 (142)
Q Consensus 44 ~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~ 123 (142)
..++..|++++|.++..|..++.++| +..+...||+|||+++++|+..+.++|..||..++.++...+...+.+|...
T Consensus 810 s~~~~lF~~t~~~di~~L~~~~~~~D--~~~l~~~aHrLKG~~aml~l~~l~~~~~~LE~~i~~~~~~~i~~~i~~id~~ 887 (894)
T PRK10618 810 SDYYALFVDTVPDDVKRLYTEAATSD--FASLAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDEPGIENYISDIDSF 887 (894)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Confidence 45668999999999999999999998 9999999999999999999999999999999999999999999988888887
Q ss_pred HHHHH
Q 045628 124 YATLR 128 (142)
Q Consensus 124 ~~~~~ 128 (142)
+.++.
T Consensus 888 v~~ll 892 (894)
T PRK10618 888 VKSLL 892 (894)
T ss_pred HHHHh
Confidence 77654
No 8
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.06 E-value=1.5e-09 Score=96.39 Aligned_cols=100 Identities=14% Similarity=0.214 Sum_probs=93.6
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHH
Q 045628 38 ANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTF 117 (142)
Q Consensus 38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~ 117 (142)
-++..+.+.+..|.+..+..+..+..++..+| +..+...||+|||+++++|+..++.+|..+|.....+..+.....+
T Consensus 678 ~g~~~~~~~l~~~~~~~~~~~~~l~~~l~~~d--~~~~~~~ah~l~g~~~~~g~~~l~~~~~~le~~~~~~~~~~~~~~~ 755 (779)
T PRK11091 678 VGPKLITDSLAVFEKMMPGYLSVLDSNLTARD--QKGIVEEAHKIKGAAGSVGLRHLQQLAQQIQSPDLPAWWDNVQDWV 755 (779)
T ss_pred cCHHHHHHHHHHHHHhhHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcCccccHHHHHHHH
Confidence 35567888999999999999999999999998 9999999999999999999999999999999998888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC
Q 045628 118 QLLKRDYATLRRKLEAYFQQAL 139 (142)
Q Consensus 118 ~~l~~~~~~~~~~L~~~l~~~~ 139 (142)
++++.+|+.....|+.|+...+
T Consensus 756 ~~l~~~~~~~~~~~~~~~~~~~ 777 (779)
T PRK11091 756 EELKNEWRHDVEVLKAWLAQAE 777 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998754
No 9
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.76 E-value=1.9e-07 Score=83.87 Aligned_cols=98 Identities=14% Similarity=0.219 Sum_probs=87.8
Q ss_pred cCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcC-ChhhHHH
Q 045628 37 DANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAG-NGEGCMK 115 (142)
Q Consensus 37 ~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~-~~~~~~~ 115 (142)
.+.++...+++..|.++.+..+..|..++...+ +..+...+|++||+++++|+..+..+|..+|..++.+ ..+.+..
T Consensus 820 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~h~l~g~~~~~g~~~l~~~~~~le~~~~~~~~~~~~~~ 897 (919)
T PRK11107 820 AGKPDLARDMLQMLLDFLPEVRNKVEEALAGED--PEGLLDLIHKLHGSCSYSGVPRLKKLCQLIEQQLRSGTSVEDLEP 897 (919)
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCChhhHHH
Confidence 357888899999999999999999999999987 9999999999999999999999999999999999976 4567778
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045628 116 TFQLLKRDYATLRRKLEAYFQ 136 (142)
Q Consensus 116 ~~~~l~~~~~~~~~~L~~~l~ 136 (142)
.+.++..++.++..+++.++.
T Consensus 898 ~~~~~~~~~~~~~~~~~~~~~ 918 (919)
T PRK11107 898 ELLELLDEMENVARAAKKVLS 918 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888887764
No 10
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=98.66 E-value=1.3e-07 Score=85.23 Aligned_cols=91 Identities=19% Similarity=0.243 Sum_probs=75.4
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHH
Q 045628 38 ANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTF 117 (142)
Q Consensus 38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~ 117 (142)
.+++.+.+++..|.++.+..+..+..+...+| +..+...||+|||+++++|+..+...|..+|..+...
T Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~ah~lkg~~~~lg~~~l~~~~~~le~~~~~~--------- 888 (914)
T PRK11466 820 MGTEKIHEWLALFKQHALPLLDEIDIARASQD--SEKIKRAAHQLKSSCSSLGMRQASQACAQLEQQPLSA--------- 888 (914)
T ss_pred cCHHHHHHHHHHHHHhhHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCc---------
Confidence 35666789999999999999999999999998 9999999999999999999999999999999875431
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC
Q 045628 118 QLLKRDYATLRRKLEAYFQQAL 139 (142)
Q Consensus 118 ~~l~~~~~~~~~~L~~~l~~~~ 139 (142)
..+...+.+....|+.|+..+.
T Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~ 910 (914)
T PRK11466 889 PLPHEEITRSVAALEAWLAKKD 910 (914)
T ss_pred hhHHHHHHHHHHHHHHHHHhCc
Confidence 2344566666667777776543
No 11
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.20 E-value=1.3e-05 Score=71.88 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHhcCC---C---CHHHHHHHhhhhcccccccChHHHHHHHHHHHH---HHHcCCh
Q 045628 40 PNFVEEVVTLHYRDSARLITTIERALEKSP---L---DFNKLDGYMHQFKGSSTSIGAKKVKAESTQFRE---YCEAGNG 110 (142)
Q Consensus 40 ~~~l~ell~~Fl~d~~~~l~~L~~al~~~d---~---D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~---~~~~~~~ 110 (142)
+....+++..|+.++++.+..|..++-.-+ - -...+.+.||+|||+|+.+|+..+..+|..+|. +.|++..
T Consensus 3 ~~~~~~~~~~F~~Ea~e~l~~l~~~Ll~LE~~~~d~~~ln~ifRaaHTlKG~a~~~g~~~l~~l~H~~E~~ld~~r~g~~ 82 (716)
T COG0643 3 SMDMEEILEDFLEEAEELLQALEQALLALEPDPEDLDLLNAIFRAAHTLKGGAGTLGLTTLAELAHAMEDLLDALRNGEL 82 (716)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHhHhhccCCCCCHHHHHHHHHHHHhhhhhhhhcChhHHHHHHHHHHHHHHHHhcCCc
Confidence 345678999999999999999998663211 1 256789999999999999999999999999996 4666766
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 045628 111 EGCMKTFQLLKRDYATLRR 129 (142)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~ 129 (142)
.--..++..+-++...+..
T Consensus 83 ~~~~~l~d~~l~~~D~l~~ 101 (716)
T COG0643 83 ELTSELLDLLLEALDALEE 101 (716)
T ss_pred cCcHHHHHHHhhhhHHHHH
Confidence 5444444444444333333
No 12
>PRK10547 chemotaxis protein CheA; Provisional
Probab=98.09 E-value=2.4e-05 Score=69.66 Aligned_cols=63 Identities=13% Similarity=0.273 Sum_probs=52.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhc---CCC---CHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHH
Q 045628 44 EEVVTLHYRDSARLITTIERALEK---SPL---DFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCE 106 (142)
Q Consensus 44 ~ell~~Fl~d~~~~l~~L~~al~~---~d~---D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~ 106 (142)
.+++..|++++.+.++.|...+-. ... ....+.+.+|+|||+|+.+|+..+..+|..+|....
T Consensus 4 ~~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~H~~E~lld 72 (670)
T PRK10547 4 SDFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETTHLMENLLD 72 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHHHHHHHHHH
Confidence 578999999999999999988742 111 256788999999999999999999999999996543
No 13
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=97.59 E-value=0.0021 Score=60.01 Aligned_cols=96 Identities=13% Similarity=0.225 Sum_probs=81.3
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCC-hhhHHHH
Q 045628 38 ANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGN-GEGCMKT 116 (142)
Q Consensus 38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~-~~~~~~~ 116 (142)
.+...+.+++..+.......+..+..+...++ ...+..++|++||++..+|+..+...|.++|..+...+ .+.+...
T Consensus 1097 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~g~~~~l~~~~l~~~~~~~e~~~~~~~~~~~l~~~ 1174 (1197)
T PRK09959 1097 NDLQLMQEILMTFQHETHKDLPAAFHALEAGD--NRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSDDSKPEILQL 1174 (1197)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhhcCCchHHHHHH
Confidence 46678899999999999999999999999998 99999999999999999999999999999998887654 4566666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045628 117 FQLLKRDYATLRRKLEAYF 135 (142)
Q Consensus 117 ~~~l~~~~~~~~~~L~~~l 135 (142)
+..+..........+..|+
T Consensus 1175 ~~~~~~~~~~~~~~~~~~~ 1193 (1197)
T PRK09959 1175 LNSVKEHIAELDQEIAVFC 1193 (1197)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7777766666666666665
No 14
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.76 E-value=0.0069 Score=54.71 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=57.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q 045628 46 VVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYA 125 (142)
Q Consensus 46 ll~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~ 125 (142)
+-..+.+.....+..+..+++.++ .+...+|++||+++.+|+..+...|..+|..++.+....... +..+++.+.
T Consensus 838 l~~~~~~~l~~~~~~~~~~~~~~~----~l~~~~h~i~~~~~~~g~~~l~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~ 912 (921)
T PRK15347 838 LNSKLYQSLLLLLAQIEQAVENQE----VLSQLLHTLKGCAGQAGLTELQCAVIDLENALETGEILSLEE-LTDLRELIH 912 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHH
Confidence 444555566677888888887663 789999999999999999999999999999998875543332 344444444
Q ss_pred HH
Q 045628 126 TL 127 (142)
Q Consensus 126 ~~ 127 (142)
.+
T Consensus 913 ~~ 914 (921)
T PRK15347 913 AL 914 (921)
T ss_pred HH
Confidence 33
No 15
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=90.99 E-value=5 Score=37.16 Aligned_cols=118 Identities=11% Similarity=0.173 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhc--ccccCChHHHHHHHHhhc--------ccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHH
Q 045628 6 QLRRQLASMRQS--LFDQGHLDEQFILLEELQ--------DDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKL 75 (142)
Q Consensus 6 ~~~~~~~~~~~~--~~~~g~lD~~~~~L~~L~--------~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~ 75 (142)
++++....+|.- -.+.|=|..+-.+|+.-+ .+.+.+=+.++++.+.+-..+.+.+|.+-..+.. -..
T Consensus 447 ~~~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQe~L~eAL~~gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~--~~~- 523 (820)
T PF13779_consen 447 ALREVADLLWDLALRIEDGDLSDAERRLRAAQEALREALERGASDEEIARLMQELREAMQDYMQALAEQAQRNP--QQQ- 523 (820)
T ss_pred HHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCc--ccc-
Confidence 344444444443 344466666544444322 2345566778888888888888888877766553 111
Q ss_pred HHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHH
Q 045628 76 DGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLR 128 (142)
Q Consensus 76 ~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (142)
..+..-+.+.+++-..|..+...||+.+++|+.+++.++++++++-+++++
T Consensus 524 --~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq 574 (820)
T PF13779_consen 524 --DQPPDQGNSQMMSQQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENMQ 574 (820)
T ss_pred --cCcccchhhhccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence 111124667799999999999999999999999999999999988877654
No 16
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=89.85 E-value=10 Score=35.30 Aligned_cols=117 Identities=10% Similarity=0.177 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhc--ccccCChHHHHHHHHhh--------cccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHH
Q 045628 6 QLRRQLASMRQS--LFDQGHLDEQFILLEEL--------QDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKL 75 (142)
Q Consensus 6 ~~~~~~~~~~~~--~~~~g~lD~~~~~L~~L--------~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~ 75 (142)
++++....+|.- ..+.|-|..+-..|+.- ..+-+++=+.+|+..+.+-..+.+.+|.+-..+.. +-..
T Consensus 478 ~l~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQ~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~~-~~~~- 555 (851)
T TIGR02302 478 ALRDVADNLWSLALGIEDGDLSDAERRLRAAQDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNNP-QQLA- 555 (851)
T ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cccc-
Confidence 344444444443 34447776655454433 22445666788888888888888888887666442 0001
Q ss_pred HHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHH
Q 045628 76 DGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLR 128 (142)
Q Consensus 76 ~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (142)
-..-+.+.+++-..|..+...||+.+++|+.+++.+++.++++-+++++
T Consensus 556 ----~~~~~~~~~l~~~dLq~Mmd~ieela~~G~~~~A~qlL~qlq~mmenlq 604 (851)
T TIGR02302 556 ----RPLDPNTKVLRQQDLQNMMDQIENLARSGDRDQAKQLLSQLQQMMNNLQ 604 (851)
T ss_pred ----ccCCccccccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 1112346789999999999999999999999999999999999888876
No 17
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=88.64 E-value=4.4 Score=25.84 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=36.7
Q ss_pred HHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhc
Q 045628 31 LEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFK 83 (142)
Q Consensus 31 L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LK 83 (142)
|......++.+-+.++....-......+..|..++..+| |..+....++||
T Consensus 17 le~~~~~~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d--~~~A~~~~~kLk 67 (78)
T PF07743_consen 17 LEEAQNSDDEAELEELKKEIEERIKELIKELAEAFDAKD--WEEAKEALRKLK 67 (78)
T ss_dssp HHHHCCCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCc--HHHHHHHHHHHH
Confidence 333433245566778888888888888888888888777 888888888875
No 18
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=83.62 E-value=12 Score=27.40 Aligned_cols=74 Identities=12% Similarity=0.250 Sum_probs=47.0
Q ss_pred HhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccCh---------------------HHHHHHHHHHHHHHHcCCh
Q 045628 52 RDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGA---------------------KKVKAESTQFREYCEAGNG 110 (142)
Q Consensus 52 ~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa---------------------~~L~~~c~~lE~~~~~~~~ 110 (142)
..+.+.+.+|+..+++++ |..++...|. .++.++- ..|.+--..|-.+++.+|.
T Consensus 46 ~~~~~r~~eLk~lI~kk~--W~~vrn~irg---p~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~LD~AA~~kd~ 120 (142)
T TIGR03042 46 EAAKDRLPELASLVAKED--WVFTRNLIHG---PMGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKLDEAARLQDG 120 (142)
T ss_pred HHHHHhhHHHHHHHhhcc--hHHHHHHHhc---cHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 456778899999999998 9999988874 4443332 2233333445556666555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045628 111 EGCMKTFQLLKRDYATLRRKLEAYFQQ 137 (142)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~L~~~l~~ 137 (142)
..+. ..|.++...++.|++.
T Consensus 121 ~~a~-------k~Y~~av~~~dafl~~ 140 (142)
T TIGR03042 121 PQAQ-------KAYQKAAADFDAYLDL 140 (142)
T ss_pred HHHH-------HHHHHHHHHHHHHHhh
Confidence 4444 4566666777777653
No 19
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=82.08 E-value=5.7 Score=33.52 Aligned_cols=87 Identities=15% Similarity=0.263 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHhcccccCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHH-HHHHHHHHhcCCCCHHHHHHHhhh
Q 045628 3 RNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARL-ITTIERALEKSPLDFNKLDGYMHQ 81 (142)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~-l~~L~~al~~~d~D~~~~~~~aH~ 81 (142)
+.+.++.++.+++..+|...=+-.++.++..+ ||.|- +..|+..+... ++.+-.|+..|| .+.++.+++.
T Consensus 206 ~~r~itdkv~~~~~~lF~ete~a~~l~eIk~~----DPsFd---~~~Fl~gar~aI~p~ILeAf~kGD--~e~LK~~lse 276 (378)
T TIGR00984 206 MMRGVTDKIGGVFSGMFSETEVSEVLTEFKKI----DPTFD---KEHFLRFLREYIVPEILEAYVKGD--LEVLKSWCSE 276 (378)
T ss_pred HhHHhhhhhhhhhhcccCCCHHHHHHHHHHHh----CCCCC---HHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHhhCH
Confidence 34567778888888888877666667776665 67774 67889999999 799999999998 8888877654
Q ss_pred hcccccccChHHHHHHHHHHHHHHHcC
Q 045628 82 FKGSSTSIGAKKVKAESTQFREYCEAG 108 (142)
Q Consensus 82 LKGss~~iGa~~L~~~c~~lE~~~~~~ 108 (142)
......|..+++....|
T Consensus 277 ----------~vy~~f~a~I~qr~~~G 293 (378)
T TIGR00984 277 ----------APFSVYATVVKEYKKMG 293 (378)
T ss_pred ----------HHHHHHHHHHHHHHHCC
Confidence 24455566677666655
No 20
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=80.06 E-value=11 Score=27.62 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045628 59 TTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYF 135 (142)
Q Consensus 59 ~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l 135 (142)
+.+..+-..+| ...+..+.+.++ ..+..+...++.+...++++.+...+..++= |..+...++.+.
T Consensus 88 E~lee~~~~~d--~~~L~~l~~~~~--------~~~~~~~~~l~~~~~~~d~~~A~~~~~kLky-~~kl~~~i~~~~ 153 (157)
T TIGR00714 88 EELDEIEQAKD--EARLESFIKRVK--------KMFQTRHQLLVEQLDNQTWAAAADYTRKLRF-LDKLRSSAEQLE 153 (157)
T ss_pred HHHHHHHhCCC--HHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 33333334444 666666666665 3456666777777777788777777666653 566666665543
No 21
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=73.63 E-value=13 Score=28.75 Aligned_cols=78 Identities=12% Similarity=0.163 Sum_probs=53.9
Q ss_pred HHhHHHHHHHHHHHHhcCCCCHHHHHHHhhh--------hcccccccC----------hHHHHHHHHHHHHHHHcCChhh
Q 045628 51 YRDSARLITTIERALEKSPLDFNKLDGYMHQ--------FKGSSTSIG----------AKKVKAESTQFREYCEAGNGEG 112 (142)
Q Consensus 51 l~d~~~~l~~L~~al~~~d~D~~~~~~~aH~--------LKGss~~iG----------a~~L~~~c~~lE~~~~~~~~~~ 112 (142)
+.++.+.|..|+..|+.+. |..+....|. |+....+.+ +..|..-...|..+++.++...
T Consensus 105 ik~sa~~L~~lk~lIdk~s--W~~v~~~LRlka~~Lr~DL~~liss~p~~~kk~l~~La~~lf~~ie~LD~Aar~K~~~~ 182 (202)
T PF05757_consen 105 IKESAKRLLSLKELIDKKS--WPYVRNYLRLKAGYLRYDLNTLISSKPKDEKKALTDLANKLFDNIEELDYAARSKDVPE 182 (202)
T ss_dssp HHHHHHHHCCCHHHHHTT---HHHHHHHHHCCCCCHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 5677888889999999887 9999888774 233333333 2456666777888899988888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045628 113 CMKTFQLLKRDYATLRRK 130 (142)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~ 130 (142)
+..++......++++...
T Consensus 183 a~~~Y~~t~~~Ldevla~ 200 (202)
T PF05757_consen 183 AEKYYADTVKALDEVLAK 200 (202)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888777777766666543
No 22
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=70.53 E-value=28 Score=25.78 Aligned_cols=56 Identities=21% Similarity=0.225 Sum_probs=36.7
Q ss_pred HHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045628 72 FNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQ 136 (142)
Q Consensus 72 ~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~ 136 (142)
...+..+.+.++. .+..+...|+.+...++++.+...+.+++= |.++...++.-+.
T Consensus 108 ~~~L~~l~~~~~~--------~~~~~~~~l~~~f~~~d~~~A~~~~~~L~y-~~kl~~~i~~k~~ 163 (166)
T PRK01356 108 FSDLEKIKNKYEL--------MYKNEIDSLKQAFEEQNLSDATIKTSKLKY-IGTLLNKLQEKIK 163 (166)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence 5556666666654 335666777777777888888877777764 6666666655443
No 23
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=70.28 E-value=27 Score=23.16 Aligned_cols=66 Identities=9% Similarity=0.117 Sum_probs=50.1
Q ss_pred HHHHhcccccCChHHH-HHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhh
Q 045628 12 ASMRQSLFDQGHLDEQ-FILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQ 81 (142)
Q Consensus 12 ~~~~~~~~~~g~lD~~-~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~ 81 (142)
...+..+.+.|+|+.. .+.+..-. ...+-.+.+|++...-++........++.... |..++.+.|.
T Consensus 17 ~~ild~L~~~gvlt~~~~e~I~~~~--t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~--~~~La~lL~~ 83 (86)
T cd08323 17 SYIMDHMISDGVLTLDEEEKVKSKA--TQKEKAVMLINMILTKDNHAYVSFYNALLHEG--YKDLALLLHD 83 (86)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--ChHHHHHHhc
Confidence 3456667788888884 66666632 34667789999999999999999999997654 8888877663
No 24
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=69.53 E-value=30 Score=25.97 Aligned_cols=53 Identities=11% Similarity=0.303 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHHHHHHHH
Q 045628 72 FNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEA-GNGEGCMKTFQLLKRDYATLRRKLEA 133 (142)
Q Consensus 72 ~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~-~~~~~~~~~~~~l~~~~~~~~~~L~~ 133 (142)
...+..+...++ ..+..+...++.+... ++++.+...+..++= |.++...+..
T Consensus 116 ~~~L~~l~~e~~--------~~~~~~~~~l~~~~~~~~d~~~A~~~~~kL~y-~~kl~~ei~~ 169 (176)
T PRK03578 116 VDALDALLAELR--------DERRERYAELGALLDSRGDDQAAAEAVRQLMF-IEKLAQEIGA 169 (176)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHccccHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 666666666664 3445555666655555 677766666555552 4455554443
No 25
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=68.87 E-value=32 Score=25.77 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 045628 39 NPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQ 118 (142)
Q Consensus 39 ~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~ 118 (142)
||+|+-++++ .=++|..+-..+| ...+..+...++ ..+..+...++.+...++++.+...+.
T Consensus 90 d~~fLme~ME--------~rE~lee~~~~~d--~~~L~~l~~~v~--------~~~~~~~~~l~~~~~~~d~~~A~~~~~ 151 (173)
T PRK01773 90 DMAFLMQQME--------WREQLEEIEQQQD--EDALTAFSKEIK--------QEQQAILTELSTALNSQQWQQASQIND 151 (173)
T ss_pred CHHHHHHHHH--------HHHHHHhhcccCC--HHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5667666554 1122333333444 777777777665 345677777887788888888777666
Q ss_pred HHHHHHHHHHHHHHH
Q 045628 119 LLKRDYATLRRKLEA 133 (142)
Q Consensus 119 ~l~~~~~~~~~~L~~ 133 (142)
+++= |..+..++..
T Consensus 152 rL~y-~~kl~~ei~~ 165 (173)
T PRK01773 152 RLRF-IKKLIIEIER 165 (173)
T ss_pred HHHH-HHHHHHHHHH
Confidence 6553 4455555543
No 26
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=67.61 E-value=38 Score=26.23 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=43.2
Q ss_pred cccccccChHHHHHHHHHHHHHHHcCChh------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045628 83 KGSSTSIGAKKVKAESTQFREYCEAGNGE------GCMKTFQLLKRDYATLRRKLEAYFQQ 137 (142)
Q Consensus 83 KGss~~iGa~~L~~~c~~lE~~~~~~~~~------~~~~~~~~l~~~~~~~~~~L~~~l~~ 137 (142)
++..+.+|.......+..|...+.+.|+- .+.+.+..+...++.....|++.+..
T Consensus 31 ~~~~~I~Gm~~~~~~~~~i~~~a~~DdPyAD~~L~~iEe~i~~~~~~l~~~~~~l~~~l~~ 91 (217)
T PF08900_consen 31 PGKPAIIGMPGFASRLNRIWRDARQDDPYADWWLLRIEEKINEARQELQELIARLDALLAE 91 (217)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34558999999999999999999987653 35666777777777777777777766
No 27
>PLN02956 PSII-Q subunit
Probab=62.82 E-value=67 Score=24.54 Aligned_cols=78 Identities=6% Similarity=0.104 Sum_probs=54.2
Q ss_pred HHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccC---------------------hHHHHHHHHHHHHHHH
Q 045628 48 TLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIG---------------------AKKVKAESTQFREYCE 106 (142)
Q Consensus 48 ~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iG---------------------a~~L~~~c~~lE~~~~ 106 (142)
..=+.++.+.|-.|+..|++++ |.-+....| |.++.++ +..|.+-...|..+++
T Consensus 86 ~ar~k~~A~~l~~LK~LI~k~~--W~yvrn~LR---gp~s~Lr~DL~~Ii~slpp~Drk~a~~La~~LFd~l~~LD~AAR 160 (185)
T PLN02956 86 ESGVRGHAENLLRVKALIESES--WKEAQKALR---RSASNLKQDLYAIIQAKPGKDRPQLRRLYSDLFNSVTKLDYAAR 160 (185)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHH---ccHHHHHHHHHHHHHhcCHhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345566777778888888887 888877765 4444444 2345555677888888
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHH
Q 045628 107 AGNGEGCMKTFQLLKRDYATLRRK 130 (142)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~ 130 (142)
.+|...+...+......|..+...
T Consensus 161 ~kd~~~a~k~Y~~tva~lD~Vl~~ 184 (185)
T PLN02956 161 DKDETRVWEYYENIVASLDDIFSR 184 (185)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888777777777766553
No 28
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=62.48 E-value=20 Score=30.92 Aligned_cols=67 Identities=9% Similarity=-0.004 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChh
Q 045628 39 NPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGE 111 (142)
Q Consensus 39 ~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~ 111 (142)
+++-....+..|+++.-.....-+.|+..++ +- +=|++=+++.|+|.-.-.++|++.+.+-++++..
T Consensus 226 tr~~A~~~L~~Fi~~~L~nFG~yQDam~~d~--~~----L~HSllS~alNigLL~PleVi~Aa~~Ay~~g~ip 292 (505)
T COG3046 226 TRTQALRALKHFIADRLPNFGSYQDAMSADD--PH----LWHSLLSFALNIGLLTPLEVIRAALKAYREGDIP 292 (505)
T ss_pred CHHHHHHHHHHHHHHhhhcCCcHHHHHhcCC--ch----hHHHHHHHHhhccCCCHHHHHHHHHHhhccCCCc
Confidence 4455678999999999999999999999887 43 8899999999999999999999999999987543
No 29
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=59.56 E-value=67 Score=23.47 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=37.5
Q ss_pred HHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChH
Q 045628 30 LLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAK 92 (142)
Q Consensus 30 ~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~ 92 (142)
+|..|-+.++=.+++-.|..=..+...++..|...+-..| -+.++.++-.|+++-..+...
T Consensus 54 eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~d--qk~a~~L~~~Lf~~L~~LD~A 114 (142)
T TIGR03042 54 ELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKD--QKEALALAKELKDDLEKLDEA 114 (142)
T ss_pred HHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 3444433344445556666666666666666666666555 777777777777776666543
No 30
>PF05396 Phage_T7_Capsid: Phage T7 capsid assembly protein; InterPro: IPR008768 This family contains the capsid assembly protein (scaffolding protein) of bacteriophage T7.; GO: 0019069 viral capsid assembly
Probab=55.55 E-value=73 Score=22.71 Aligned_cols=44 Identities=7% Similarity=0.079 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhc
Q 045628 38 ANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFK 83 (142)
Q Consensus 38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LK 83 (142)
|+++-+..|+.---..+|..++.+..+++.+| ...++-+.-.+.
T Consensus 44 GG~e~f~~i~~~~~~~~~~~~ea~~~Ai~~~d--la~vk~~vn~~~ 87 (123)
T PF05396_consen 44 GGEEGFAAIMSHAEANSPAAAEAFNEAIESGD--LATVKAAVNLAG 87 (123)
T ss_pred cCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC--HHHHHHHHHHHH
Confidence 67777788888877888999999999999998 666665544333
No 31
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=54.65 E-value=36 Score=18.87 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhh
Q 045628 43 VEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQ 81 (142)
Q Consensus 43 l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~ 81 (142)
+.+.+..|..+. ....|..|+..+| -+.+..++..
T Consensus 2 L~~~~~~~~~~~--L~~~ID~ALd~~D--~e~F~~Ls~e 36 (37)
T PF08858_consen 2 LDESLREFRKEQ--LLELIDEALDNRD--KEWFYELSEE 36 (37)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHTT---HHHHHHHHHH
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHcCC--HHHHHHHHhh
Confidence 445555555544 7888999999998 8888877654
No 32
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=54.57 E-value=81 Score=23.40 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 045628 94 VKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEA 133 (142)
Q Consensus 94 L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~ 133 (142)
+..+...++.+...++++.+...+..++= |..+...++.
T Consensus 126 ~~~~~~~l~~~~~~~d~~~A~~~~~~Lky-~~kl~~ei~~ 164 (171)
T PRK05014 126 FKTRLQQMVEQLDNEAWDAAADTVRKLKF-LDKLRSEVEQ 164 (171)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45555666666666677776666655543 4455555543
No 33
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.78 E-value=61 Score=24.70 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHH
Q 045628 93 KVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRK 130 (142)
Q Consensus 93 ~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (142)
.++.+|..++.+-+..|++.+..+++..+..|+.+...
T Consensus 94 sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvq 131 (203)
T KOG3232|consen 94 SMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQ 131 (203)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhH
Confidence 35788999999999999999999999999999987653
No 34
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=51.97 E-value=20 Score=22.08 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=27.4
Q ss_pred HHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHH
Q 045628 27 QFILLEELQDDANPNFVEEVVTLHYRDSARLITTIE 62 (142)
Q Consensus 27 ~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~ 62 (142)
+|.+++.+-. .+|+++..++...-.+.|+.+..|.
T Consensus 9 qf~~lR~~vq-~NP~lL~~lLqql~~~nP~l~q~I~ 43 (59)
T PF09280_consen 9 QFQQLRQLVQ-QNPQLLPPLLQQLGQSNPQLLQLIQ 43 (59)
T ss_dssp HHHHHHHHHH-C-GGGHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHH-HCHHHHHHHHHHHhccCHHHHHHHH
Confidence 6888888765 5899999999888888888776664
No 35
>PRK03636 hypothetical protein; Provisional
Probab=49.00 E-value=66 Score=24.32 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhc
Q 045628 43 VEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFK 83 (142)
Q Consensus 43 l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LK 83 (142)
+.+.+..|.. .+.+..|..|+..+| -+.+.++...||
T Consensus 138 L~~~~~~~r~--~~L~~~ID~ALd~~D--~e~F~~Ls~~l~ 174 (179)
T PRK03636 138 LEQSVFQFRR--EKLLKQIDEALDRRD--KEAFHRLSDELN 174 (179)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHcCC--HHHHHHHHHHHH
Confidence 3333444433 457899999999998 999988888776
No 36
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=48.72 E-value=1.9e+02 Score=25.51 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045628 114 MKTFQLLKRDYATLRRKLEAYFQ 136 (142)
Q Consensus 114 ~~~~~~l~~~~~~~~~~L~~~l~ 136 (142)
...+..|+.+|...+..|...+.
T Consensus 149 ~~i~~~Lk~e~~~lr~~L~~~L~ 171 (593)
T PF06248_consen 149 LKILKLLKDEYSELRENLQYQLS 171 (593)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677666666655544
No 37
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=48.44 E-value=56 Score=19.26 Aligned_cols=41 Identities=2% Similarity=-0.030 Sum_probs=27.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccc
Q 045628 45 EVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTS 88 (142)
Q Consensus 45 ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~ 88 (142)
.-+....++-.++|.+|+ .+.|..-..+.-++|.||..+..
T Consensus 5 ~yl~~~t~efgdDLd~lR---~~~dF~~~sl~~Li~aL~~G~~~ 45 (47)
T PF14615_consen 5 FYLQRLTDEFGDDLDELR---KAPDFTDKSLPLLIDALQQGTDM 45 (47)
T ss_pred HHHHHHHHHHHHHHHHHh---cCCCCCchhHHHHHHHHHhcccc
Confidence 344455555566777887 44454467888899999887654
No 38
>TIGR03761 ICE_PFL4669 integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=47.47 E-value=1.3e+02 Score=23.49 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=41.5
Q ss_pred cccccChHHHHHHHHHHHHHHHcCChh------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045628 85 SSTSIGAKKVKAESTQFREYCEAGNGE------GCMKTFQLLKRDYATLRRKLEAYFQQ 137 (142)
Q Consensus 85 ss~~iGa~~L~~~c~~lE~~~~~~~~~------~~~~~~~~l~~~~~~~~~~L~~~l~~ 137 (142)
-.+++|.......+..|...+.+.|+= .+...+.++...++.+...+++.+..
T Consensus 31 ~~~IiGl~~f~s~~~~i~~~a~~DdPyAD~~Ll~~E~~l~~~~~~l~~~~~~l~~~l~~ 89 (216)
T TIGR03761 31 KPGIIGMPGFISRLNRINQASEQDDPYADWALLRIEEKLLSARQEMQALLQRLDDLLAQ 89 (216)
T ss_pred CCCCcCcHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999987653 35566777777777777777777664
No 39
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=47.42 E-value=59 Score=19.31 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=26.7
Q ss_pred HHHhcccccCChHH-HHHHHHhhcc-cCChHHHHHHHHH
Q 045628 13 SMRQSLFDQGHLDE-QFILLEELQD-DANPNFVEEVVTL 49 (142)
Q Consensus 13 ~~~~~~~~~g~lD~-~~~~L~~L~~-~~~~~~l~ell~~ 49 (142)
..+..+-++| ||. ++.-+-+|-+ +-+|+-+..+|..
T Consensus 9 ~eiS~lLntg-Ld~etL~ici~L~e~GVnPeaLA~vI~e 46 (48)
T PF12554_consen 9 HEISDLLNTG-LDRETLSICIELCENGVNPEALAAVIKE 46 (48)
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3456667778 666 6888888877 6689888888764
No 40
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=46.83 E-value=86 Score=21.73 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=34.2
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 045628 103 EYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQALPG 141 (142)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~ 141 (142)
.+++.|+.+.+...+.+-++++......=...++.+-.|
T Consensus 28 ~~Ak~g~f~~A~~~i~eA~~~l~eAH~~QT~Liq~eA~G 66 (105)
T COG1447 28 KAAKEGDFEEAEELIQEANDALNEAHHVQTKLIQKEASG 66 (105)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 457999999999999999999999998878888877766
No 41
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.96 E-value=5.5 Score=25.86 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=17.5
Q ss_pred hhhcccccccChHHHHHHHH
Q 045628 80 HQFKGSSTSIGAKKVKAEST 99 (142)
Q Consensus 80 H~LKGss~~iGa~~L~~~c~ 99 (142)
-+||||++.+++-.+-..|.
T Consensus 27 k~I~GSCGGi~alGi~K~Cd 46 (77)
T COG2991 27 KSIKGSCGGIAALGIEKVCD 46 (77)
T ss_pred cccccccccHHhhccchhcC
Confidence 36899999999999888886
No 42
>PRK03057 hypothetical protein; Provisional
Probab=44.90 E-value=76 Score=24.05 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=27.4
Q ss_pred HHHHHHHHh------HHHHHHHHHHHHhcCCCCHHHHHHHhhhhc
Q 045628 45 EVVTLHYRD------SARLITTIERALEKSPLDFNKLDGYMHQFK 83 (142)
Q Consensus 45 ell~~Fl~d------~~~~l~~L~~al~~~d~D~~~~~~~aH~LK 83 (142)
+.++.|++. ..+.+..|..|+..+| .+.+.++.+.|+
T Consensus 131 ~~ae~~L~~~~~~~~~~~L~~~ID~ALd~~D--~e~F~~Lt~~L~ 173 (180)
T PRK03057 131 KETEQVLDEVLKRNEVSRLRMQIDQALDRKD--MEEFQRLTEKLK 173 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
Confidence 334555554 4457889999999998 888888887775
No 43
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=42.36 E-value=48 Score=20.55 Aligned_cols=62 Identities=8% Similarity=0.162 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q 045628 43 VEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKR 122 (142)
Q Consensus 43 l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~ 122 (142)
+..+.+.|..-.......+....... +..= ..+|.+++....+.+.......+..|..
T Consensus 7 F~~a~~~~~~~~~~~~~~~~~~~~~n---~~~K-------------------~~Li~~~~~l~~~~d~~~~~~~~k~l~~ 64 (77)
T PF03993_consen 7 FRAACDAFFDRRKEFFEEQDAEREEN---LEKK-------------------EALIEEAEALAESEDWKEAAEEIKELQQ 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------------------HHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 35566666666666665555544432 2221 3566666766666666666666666666
Q ss_pred HHHH
Q 045628 123 DYAT 126 (142)
Q Consensus 123 ~~~~ 126 (142)
.|..
T Consensus 65 ~Wk~ 68 (77)
T PF03993_consen 65 EWKE 68 (77)
T ss_pred HHHH
Confidence 6654
No 44
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=41.53 E-value=61 Score=26.44 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=37.4
Q ss_pred HHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHH
Q 045628 73 NKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKL 131 (142)
Q Consensus 73 ~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L 131 (142)
......+|.+||++..+.-..+..+...+-.-++-|+...-...-+.++..+.++...+
T Consensus 209 ~A~~~~~~~~~g~~~l~~e~g~~~l~~~Vsstaeyg~~~~~~~~~~~~~~~~~~~~~~i 267 (314)
T TIGR00465 209 LAYFETVHELKLIVDLIYEGGITGMRDRISNTAEYGALTRRRIIKEELKPEMQKILKEI 267 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHcCCHHHcCcchhHHHhhHHHHHHHHHHHHHh
Confidence 44556799999999999766666666666666777766543333344444444444433
No 45
>PF07870 DUF1657: Protein of unknown function (DUF1657); InterPro: IPR012452 This domain appears to be restricted to the Bacillales.
Probab=40.28 E-value=79 Score=18.68 Aligned_cols=36 Identities=6% Similarity=0.200 Sum_probs=30.0
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 045628 99 TQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAY 134 (142)
Q Consensus 99 ~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~ 134 (142)
..+|..+-..+-+.+...|.+....++++...|+.+
T Consensus 14 A~Le~fal~T~d~~AK~~y~~~a~~l~~ii~~L~~r 49 (50)
T PF07870_consen 14 ADLETFALQTQDQEAKQMYEQAAQQLEEIIQDLEPR 49 (50)
T ss_pred hhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 568888888778889999999999999988888754
No 46
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.04 E-value=73 Score=27.53 Aligned_cols=66 Identities=14% Similarity=0.331 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcccccCChHHHHHHHHhhcc-cCChHHHHHHHHHHHHhHHHH-HHHHHHHHhcCCCCHHHHHHHhhh
Q 045628 6 QLRRQLASMRQSLFDQGHLDEQFILLEELQD-DANPNFVEEVVTLHYRDSARL-ITTIERALEKSPLDFNKLDGYMHQ 81 (142)
Q Consensus 6 ~~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~-~~~~~~l~ell~~Fl~d~~~~-l~~L~~al~~~d~D~~~~~~~aH~ 81 (142)
.++++|.+-+.++|+.-=..+++.++..+.. -+.++|+ .+.++. ++.+-+|+-.|| .+.+...||.
T Consensus 283 dvtdki~~~~~g~fsktE~Sev~tei~~iDPsF~~~~Fl--------r~~ee~IiPnVLeAyvkGD--~evLK~wcse 350 (459)
T KOG2580|consen 283 DVTDKITDVDGGLFSKTEMSEVLTEIKKIDPSFDKEDFL--------RECEEYIIPNVLEAYVKGD--LEVLKKWCSE 350 (459)
T ss_pred HHHHhhhhcccccchhhHHHHHHHHHHhcCCCCCcHHHH--------HHHHHhhhHHHHHHHHhcc--HHHHHHHHhh
Confidence 5678888888888886555557777777643 2334444 333433 566888999998 8999988885
No 47
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=38.16 E-value=47 Score=23.96 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=28.0
Q ss_pred CChHHHHHHHHhhcc--cCCh---HHHHHHHHHHHHhHHH
Q 045628 22 GHLDEQFILLEELQD--DANP---NFVEEVVTLHYRDSAR 56 (142)
Q Consensus 22 g~lD~~~~~L~~L~~--~~~~---~~l~ell~~Fl~d~~~ 56 (142)
|.||..+.+|.+.-+ +|.| .|-...|..|+.++.+
T Consensus 92 GSlDalIGrLraafee~Gg~pe~NPf~~~~vr~yLr~vr~ 131 (132)
T PF04852_consen 92 GSLDALIGRLRAAFEEHGGHPEANPFAARAVRLYLREVRD 131 (132)
T ss_pred ccHHHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhc
Confidence 889998899888866 3444 4889999999998753
No 48
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=38.07 E-value=87 Score=18.52 Aligned_cols=57 Identities=7% Similarity=0.060 Sum_probs=38.4
Q ss_pred HHHHHhhhhcccccccChHHHHHHHHHHHHHHH-cCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045628 74 KLDGYMHQFKGSSTSIGAKKVKAESTQFREYCE-AGNGE-GCMKTFQLLKRDYATLRRKLEAYFQQA 138 (142)
Q Consensus 74 ~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~-~~~~~-~~~~~~~~l~~~~~~~~~~L~~~l~~~ 138 (142)
-+...+|-||. +|..+...++.... ....+ .....+..+..+..++..-++..+...
T Consensus 5 ~~~~isHelr~--------PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s 63 (68)
T PF00512_consen 5 FLASISHELRN--------PLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFS 63 (68)
T ss_dssp HHHHHHHHHHH--------HHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHH--------HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899885 44455555555555 33333 448889999999999888888776644
No 49
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.83 E-value=3.5e+02 Score=25.36 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=62.1
Q ss_pred ChHHHHHHHHhhcccCChHHHHHHHHHHHH-hHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHH
Q 045628 23 HLDEQFILLEELQDDANPNFVEEVVTLHYR-DSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQF 101 (142)
Q Consensus 23 ~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~-d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~l 101 (142)
.|++++.+|... |...-..+|...|.= |-.=..-.+...++.++ |+++...|-+-|+ -||..++.+.|.
T Consensus 686 Sl~dTv~~li~~---g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~k--weeLekfAkskks---PIGy~PFVe~c~-- 755 (829)
T KOG2280|consen 686 SLHDTVTTLILI---GQNKRAEQLKSDFKIPDKRLWWLKLTALADIKK--WEELEKFAKSKKS---PIGYLPFVEACL-- 755 (829)
T ss_pred cHHHHHHHHHHc---cchHHHHHHHHhcCCcchhhHHHHHHHHHhhhh--HHHHHHHHhccCC---CCCchhHHHHHH--
Confidence 344444444433 455556777777743 22223557778888887 9999999977776 899999998885
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHH
Q 045628 102 REYCEAGNGEGCMKTFQLLKRDYATLR 128 (142)
Q Consensus 102 E~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (142)
+.++.+++.+.+..+...-+.+.
T Consensus 756 ----~~~n~~EA~KYiprv~~l~ekv~ 778 (829)
T KOG2280|consen 756 ----KQGNKDEAKKYIPRVGGLQEKVK 778 (829)
T ss_pred ----hcccHHHHhhhhhccCChHHHHH
Confidence 56777777777777665443333
No 50
>PLN02407 diphosphomevalonate decarboxylase
Probab=36.66 E-value=66 Score=26.88 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=28.3
Q ss_pred HHHHHHHHh-HHHHHHHHHHHHhcCCCCHHHHHHHh
Q 045628 45 EVVTLHYRD-SARLITTIERALEKSPLDFNKLDGYM 79 (142)
Q Consensus 45 ell~~Fl~d-~~~~l~~L~~al~~~d~D~~~~~~~a 79 (142)
.++....+. +++++..|+.|+.++| |..+..++
T Consensus 223 p~~~~w~~~~~~~~~~~~~~Ai~~~D--f~~~gei~ 256 (343)
T PLN02407 223 PLLQHRAKEVVPKRILQMEEAIKNRD--FASFAKLT 256 (343)
T ss_pred hhHHHHHHhhhHHHHHHHHHHHHhcC--HHHHHHHH
Confidence 456777888 8999999999999998 99988765
No 51
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=36.59 E-value=79 Score=17.57 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=28.8
Q ss_pred HHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045628 74 KLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQ 136 (142)
Q Consensus 74 ~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~ 136 (142)
-+..++|.||..-+.+. ..+..+.. ....+.....+..+......+..-++..+.
T Consensus 5 ~~~~i~Hel~~pl~~i~-----~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 59 (66)
T smart00388 5 FLANLSHELRTPLTAIR-----GYLELLED---TELSEEQREYLETILRSAERLLRLINDLLD 59 (66)
T ss_pred HHHHHHHhccCcHHHHH-----HHHHHHHh---CCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899995544322 22222322 222222256666677666666665555544
No 52
>KOG2424 consensus Protein involved in transcription start site selection [Transcription]
Probab=35.87 E-value=70 Score=24.50 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=19.0
Q ss_pred ccccChHHHHHHHHHHHHHHHcCChh
Q 045628 86 STSIGAKKVKAESTQFREYCEAGNGE 111 (142)
Q Consensus 86 s~~iGa~~L~~~c~~lE~~~~~~~~~ 111 (142)
-+++||..+.++|..|+. ++.+++
T Consensus 147 dA~~Gaf~I~elcq~l~~--~s~d~E 170 (195)
T KOG2424|consen 147 DATLGAFLILELCQCLQA--QSDDLE 170 (195)
T ss_pred hhhhhHHHHHHHHHHHHh--ccccHH
Confidence 478999999999999997 444443
No 53
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=35.14 E-value=1.8e+02 Score=21.35 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=53.4
Q ss_pred ccccCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCC---CHHHHHHHh-hhhcccccccChHH
Q 045628 18 LFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPL---DFNKLDGYM-HQFKGSSTSIGAKK 93 (142)
Q Consensus 18 ~~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~---D~~~~~~~a-H~LKGss~~iGa~~ 93 (142)
+...| |+..+..|..+ .++ -+..-|+.|.+...++...+........+ |...+.... .+++++.+.--.
T Consensus 68 ~~~~G-L~~il~~l~~~---~~~-~L~~Qi~~f~~~~~~D~~el~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-- 140 (197)
T PF06367_consen 68 FERLG-LLDILEKLRNL---EDD-DLQEQIDIFEENEEEDEEELLERFDSKTVDLSDPQELFEALLEKLKDTEAEDYF-- 140 (197)
T ss_dssp HHHTT-HHHHHHHHTTS-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHTTSTTHHHH--
T ss_pred HHHCC-cHHHHHHHHhc---chH-HHHHHHHHHHHHHHhhHHHHHHhhcccccccccHHHHHHHHHHHHhCcccHHHH--
Confidence 44556 44555555554 344 46788899999988888888776652111 144443333 555665543222
Q ss_pred HHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHHH
Q 045628 94 VKAESTQFREYCE-AGNGEGCMKTFQLLKRDYATL 127 (142)
Q Consensus 94 L~~~c~~lE~~~~-~~~~~~~~~~~~~l~~~~~~~ 127 (142)
...+..... ..+.+.....+.-++....++
T Consensus 141 ----~siLq~ll~i~~~~~~~~~~~~lie~~v~~i 171 (197)
T PF06367_consen 141 ----LSILQHLLLIRQDEEERSKYWQLIESLVSQI 171 (197)
T ss_dssp ----HHHHHHHTTS-TTTTTHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 223333332 355566666666666665554
No 54
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=34.97 E-value=1.2e+02 Score=19.38 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=31.7
Q ss_pred HHhhcccCChHHHHHHHHHHHHh-HHHHHHHHHHHHhcCCCCHHHHHHHh
Q 045628 31 LEELQDDANPNFVEEVVTLHYRD-SARLITTIERALEKSPLDFNKLDGYM 79 (142)
Q Consensus 31 L~~L~~~~~~~~l~ell~~Fl~d-~~~~l~~L~~al~~~d~D~~~~~~~a 79 (142)
|.+|..+.+++-+++-+...+.+ ++..|..+.+.+=+.-++.+.+.++|
T Consensus 6 i~~Lh~G~~~e~vk~~F~~~~~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LC 55 (71)
T PF04282_consen 6 IKRLHEGEDPEEVKEEFKKLFSDVSASEISAAEQELIQEGMPVEEIQKLC 55 (71)
T ss_pred HHHHhCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 55677777777666655555544 45567777776644335677777776
No 55
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=33.19 E-value=1.6e+02 Score=20.19 Aligned_cols=82 Identities=10% Similarity=0.228 Sum_probs=42.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhh-------h-------cccccccChHHHHHHHH-HHHHHHHcCC
Q 045628 45 EVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQ-------F-------KGSSTSIGAKKVKAEST-QFREYCEAGN 109 (142)
Q Consensus 45 ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~-------L-------KGss~~iGa~~L~~~c~-~lE~~~~~~~ 109 (142)
+++-+.++..-+.+.....+++.+| ++......-+ | +|.--.-....|+.-|. +|-.+...++
T Consensus 20 ~Li~~Lyd~ai~~l~~a~~a~~~~~--~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~~~~L~~A~~~~d 97 (122)
T PF02561_consen 20 QLILMLYDGAIEFLKQAKEAIEQGD--IEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYMIRQLVQANLKKD 97 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555555555566666666666665 5443332221 1 23333334455666664 4666666665
Q ss_pred hh---hHHHHHHHHHHHHHHHH
Q 045628 110 GE---GCMKTFQLLKRDYATLR 128 (142)
Q Consensus 110 ~~---~~~~~~~~l~~~~~~~~ 128 (142)
.+ ++...+..+++.|.++.
T Consensus 98 ~~~l~~v~~~l~~l~~aW~e~~ 119 (122)
T PF02561_consen 98 PERLDEVIRILEELRDAWEEIA 119 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 54 44455666666665543
No 56
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=32.98 E-value=89 Score=26.24 Aligned_cols=33 Identities=9% Similarity=0.252 Sum_probs=26.4
Q ss_pred HHHHHHHHHh-HHHHHHHHHHHHhcCCCCHHHHHHH
Q 045628 44 EEVVTLHYRD-SARLITTIERALEKSPLDFNKLDGY 78 (142)
Q Consensus 44 ~ell~~Fl~d-~~~~l~~L~~al~~~d~D~~~~~~~ 78 (142)
..++..=++. +|+.|.+|++|+.+.| |+.++.+
T Consensus 221 S~L~qhRi~~vVP~Ri~~m~eaI~~rD--F~~FA~l 254 (395)
T KOG2833|consen 221 SQLLQHRIESVVPQRIQQMREAIRERD--FESFAKL 254 (395)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHhcC--HHHHHHH
Confidence 3455555666 8999999999999998 8888765
No 57
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=31.78 E-value=4.3e+02 Score=24.85 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHHHHH
Q 045628 52 RDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAG-NGEGCMKTFQLLKRDYATLRRK 130 (142)
Q Consensus 52 ~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 130 (142)
.++...|-.|.-.|+.|| ... -..+|...=..|.++-+.| +-+++..++++|++.+++-...
T Consensus 449 ~~v~~~LW~lAl~iEdG~--ls~---------------A~~~Lr~AQe~L~eAL~~gAs~eEI~rLm~eLR~A~~~ym~~ 511 (820)
T PF13779_consen 449 REVADLLWDLALRIEDGD--LSD---------------AERRLRAAQEALREALERGASDEEIARLMQELREAMQDYMQA 511 (820)
T ss_pred HHHHHHHHHHHHHhhcCc--HHH---------------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666 222 2344556667788888877 4557888888888887777777
Q ss_pred HHHHHHHh
Q 045628 131 LEAYFQQA 138 (142)
Q Consensus 131 L~~~l~~~ 138 (142)
|......+
T Consensus 512 LAeq~~~~ 519 (820)
T PF13779_consen 512 LAEQAQRN 519 (820)
T ss_pred HHHHhHhC
Confidence 76555443
No 58
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=31.18 E-value=77 Score=24.41 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=23.8
Q ss_pred ccccChHHHHHHHHHHHHHHHcCChh-hHHHHHHHHHHH
Q 045628 86 STSIGAKKVKAESTQFREYCEAGNGE-GCMKTFQLLKRD 123 (142)
Q Consensus 86 s~~iGa~~L~~~c~~lE~~~~~~~~~-~~~~~~~~l~~~ 123 (142)
-+.+||..+.++|..|+. ....+++ .+..++...+..
T Consensus 145 eA~~Ga~~ileLc~~l~~-~~~~d~e~~i~~il~~fe~k 182 (195)
T PF04722_consen 145 EATIGAFLILELCQMLEE-EASEDLEDEIDEILQEFEEK 182 (195)
T ss_dssp HHHHHHHHHHHHHHHHH---TSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHH
Confidence 367899999999999997 2334554 444555554443
No 59
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=30.89 E-value=31 Score=24.06 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHhc-ccccCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Q 045628 2 ERNQQLRRQLASMRQS-LFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSP 69 (142)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d 69 (142)
.+||.+|-+-.+=+.. |.++-=||..+..+..|.. .|++...++.. . .+..|-..+...+
T Consensus 40 ~kN~e~R~K~~ddP~KFmdSE~dLd~~Ik~l~~La~--~P~LYp~lv~l----~--~v~sL~~LL~HeN 100 (108)
T PF08216_consen 40 NKNQEMRIKYPDDPEKFMDSEVDLDEEIKKLSVLAT--APELYPELVEL----G--AVPSLLGLLSHEN 100 (108)
T ss_pred HHhHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHccC--ChhHHHHHHHc----C--CHHHHHHHHCCCC
Confidence 4788888887665554 5555557877777777764 67766555543 1 3444444444443
No 60
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=30.66 E-value=75 Score=21.32 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=24.9
Q ss_pred HHHHHHhhcccCChHHHHHHHHHHHHhHH
Q 045628 27 QFILLEELQDDANPNFVEEVVTLHYRDSA 55 (142)
Q Consensus 27 ~~~~L~~L~~~~~~~~l~ell~~Fl~d~~ 55 (142)
.|+=|..+-++.-+.|++++++.|+++..
T Consensus 20 iF~FL~~~P~GT~~~~iR~~L~rYI~~~G 48 (97)
T PRK13916 20 IFDFLENVPRGTKTAHIREALRRYIEEIG 48 (97)
T ss_pred HHHHHHHCCCCCccHHHHHHHHHHHHhcC
Confidence 48888889887779999999999998864
No 61
>PF12854 PPR_1: PPR repeat
Probab=30.23 E-value=55 Score=17.26 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCChhhHHHHHHHH
Q 045628 98 STQFREYCEAGNGEGCMKTFQLL 120 (142)
Q Consensus 98 c~~lE~~~~~~~~~~~~~~~~~l 120 (142)
..-|...|+.|..+++..++.+.
T Consensus 11 ~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 11 NTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC
Confidence 34577889999999998888764
No 62
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=29.37 E-value=36 Score=26.84 Aligned_cols=52 Identities=8% Similarity=0.063 Sum_probs=40.2
Q ss_pred HHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHH
Q 045628 49 LHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQ 100 (142)
Q Consensus 49 ~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~ 100 (142)
.|++-+|++..-+=+.+..|||+.+.-..-.--|+.-|--++...|+++|..
T Consensus 48 IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~ 99 (230)
T KOG2716|consen 48 IFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQS 99 (230)
T ss_pred EEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4677778888888888887777666666666677777788888888888886
No 63
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=29.10 E-value=1.1e+02 Score=16.75 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=29.7
Q ss_pred HHHHHhhhhcccccccChHHHHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045628 74 KLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAG-NGEGCMKTFQLLKRDYATLRRKLEAYFQ 136 (142)
Q Consensus 74 ~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~-~~~~~~~~~~~l~~~~~~~~~~L~~~l~ 136 (142)
-+..++|.+|..-+ .+...++...+.. ..+.....+..+......+...++..+.
T Consensus 7 ~~~~~~hel~~pl~--------~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 62 (65)
T cd00082 7 FLANVSHELRTPLT--------AIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLD 62 (65)
T ss_pred HHHHHhHHhcchHH--------HHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668899984433 2222233322222 2345566667777777666666655543
No 64
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=28.39 E-value=1.1e+02 Score=16.86 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=21.2
Q ss_pred HHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHH
Q 045628 27 QFILLEELQDDANPNFVEEVVTLHYRDSARLITTI 61 (142)
Q Consensus 27 ~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L 61 (142)
.+..|.++...-+++++..++..+-.+.+..+..|
T Consensus 4 ~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~L 38 (42)
T PF02845_consen 4 MVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDAL 38 (42)
T ss_dssp HHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 35566666666667777777766666665555544
No 65
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=27.61 E-value=1.1e+02 Score=20.79 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=26.0
Q ss_pred cccChHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 045628 87 TSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLL 120 (142)
Q Consensus 87 ~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l 120 (142)
.-=|...|......++..+.+|+.+++...+..|
T Consensus 58 Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l 91 (103)
T PF07361_consen 58 YQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKL 91 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3447788888889999999999998776655443
No 66
>PF07014 Hs1pro-1_C: Hs1pro-1 protein C-terminus; InterPro: IPR009743 This entry represents the C terminus (approximately 270 residues) of a number of plant Hs1pro-1 proteins, which are believed to confer nematode resistance [].
Probab=27.49 E-value=3.2e+02 Score=21.75 Aligned_cols=64 Identities=9% Similarity=0.144 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHH
Q 045628 42 FVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKT 116 (142)
Q Consensus 42 ~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~ 116 (142)
-..+|++.++.-+.+.|..+...++.++ ++..+.-|+.+ .++..+-.++|..-.--|++....+
T Consensus 54 t~hQIlEsWi~~a~~LL~ri~~~i~~~~--~ekAa~dc~~v---------ERiWKLL~eieDlhllMDPdDFlrL 117 (261)
T PF07014_consen 54 TTHQILESWIHVARKLLERIEERIEARD--FEKAASDCWIV---------ERIWKLLAEIEDLHLLMDPDDFLRL 117 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc--HHHHHhHHHHH---------HHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4678999999999999999999999998 98887777765 6888888888887666666654443
No 67
>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]
Probab=27.37 E-value=1.9e+02 Score=21.40 Aligned_cols=60 Identities=8% Similarity=0.047 Sum_probs=47.0
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHH
Q 045628 38 ANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQ 100 (142)
Q Consensus 38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~ 100 (142)
...+|...++..++.| ....+|.+...... .--...-..|.+|+|+..+|-.+.+-.|..
T Consensus 11 ~~~d~~~sl~~qgild--~qF~qlq~lqD~~~-p~fv~ev~~~fF~~s~~~i~~~r~ald~~~ 70 (150)
T KOG4747|consen 11 DVSDYTKSLFDQGILD--SQFLQLQELQDDSS-PDFVEEVVGLFFEDSERLINNLRLALDCER 70 (150)
T ss_pred HHHHHHHHHHHHHhhH--HHHHHHHHHhcccC-ccHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3467888889988888 58889988887654 123345678999999999999998888875
No 68
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.30 E-value=94 Score=26.24 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=28.2
Q ss_pred HHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHH
Q 045628 27 QFILLEELQDDANPNFVEEVVTLHYRDSARLITTIE 62 (142)
Q Consensus 27 ~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~ 62 (142)
+|.+|+.+-. .+|+++..||...-...|+.+..|.
T Consensus 256 qf~~lR~~vq-~NP~~L~~lLqql~~~nP~l~q~I~ 290 (378)
T TIGR00601 256 QFQQLRQVVQ-QNPQLLPPLLQQIGQENPQLLQQIS 290 (378)
T ss_pred HHHHHHHHHH-HCHHHHHHHHHHHHhhCHHHHHHHH
Confidence 5888888765 6899999988888888888777664
No 69
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=27.05 E-value=1.7e+02 Score=23.21 Aligned_cols=43 Identities=5% Similarity=0.061 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHHHHHHH
Q 045628 90 GAKKVKAESTQFREYCEAG-NGEGCMKTFQLLKRDYATLRRKLE 132 (142)
Q Consensus 90 Ga~~L~~~c~~lE~~~~~~-~~~~~~~~~~~l~~~~~~~~~~L~ 132 (142)
+...|....+-...+++.| +++.....+..+..++.++..++.
T Consensus 129 ~lPaL~~A~ki~~raa~~Gfdw~~~~~~~~k~~EE~~El~~a~~ 172 (248)
T TIGR00444 129 TLPALMRAAKIQKRCAKVGFDWEDVSPVWDKVYEELDEVMYEAR 172 (248)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 4566777777888888888 888899999999999988887764
No 70
>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase. It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.
Probab=26.69 E-value=1.7e+02 Score=20.26 Aligned_cols=57 Identities=12% Similarity=0.262 Sum_probs=36.1
Q ss_pred HHHHHhhcccC--ChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhccccc
Q 045628 28 FILLEELQDDA--NPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSST 87 (142)
Q Consensus 28 ~~~L~~L~~~~--~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~ 87 (142)
|.-+.+|+..+ +..+-+.|++.|++|+...+.++.-- +-.. .+.+..+...+-|...
T Consensus 21 ~l~~~RLk~~~~~~~~~~q~l~~~~~~d~~~~l~~~gv~-d~~~--~k~~k~l~~~~~g~~~ 79 (141)
T PF03981_consen 21 WLVLRRLKAEGKEGKELEQALFDKFFEDMDERLREMGVG-DLSV--GKRMKKLQEQFYGRLL 79 (141)
T ss_pred HHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHhcCc-chhh--hHHHHHHHHHHHHHHH
Confidence 55566676644 56788899999999999998876420 1111 3445555555544443
No 71
>PF05626 DUF790: Protein of unknown function (DUF790); InterPro: IPR008508 This family consists of several hypothetical bacterial and archaeal proteins whose functions have not been experimentally verified. Computational analysis of sequence, predicted structure and genomic context suggests that these proteins may be endonucleases involved in either restriction-modification and/or DNA excision repair [].
Probab=26.17 E-value=86 Score=26.55 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=58.3
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCCCHHHHHHHhhhhcccccccChHHHHHHHHH---HHHHHHcCChhh
Q 045628 38 ANPNFVEEVVTLHYRDSARLITTIERALEK--SPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQ---FREYCEAGNGEG 112 (142)
Q Consensus 38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~--~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~---lE~~~~~~~~~~ 112 (142)
.+.++..++|..|.....+...+|..++.. +..||..++.++|=|+-.|.-=-...+--.... .+. +..-..++
T Consensus 24 ~~~~lA~~lI~~f~~~~G~~rgel~~~l~~le~~~d~KlvRGLa~lL~r~~~fe~~s~~dp~~~R~~vF~~-~~~~~~~e 102 (379)
T PF05626_consen 24 ENLELAEELIEIFQDHVGKTRGELEEALEELEDAPDYKLVRGLAKLLERRCTFEVVSPVDPEELRREVFEA-GPVLSPEE 102 (379)
T ss_pred chHHHHHHHHHHHHhccCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhcceEeecCCCCHHHHHHHHHhc-CCCCCchh
Confidence 356778999999998888888888777643 223699999999999877532221121111111 222 11124445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045628 113 CMKTFQLLKRDYATLRRKLEAYF 135 (142)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~L~~~l 135 (142)
-...++.+...+.-.-..++..|
T Consensus 103 R~~~L~~vA~~L~v~~~e~e~~L 125 (379)
T PF05626_consen 103 RQEVLEEVAEELGVSPEEVERAL 125 (379)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Confidence 56666776666655555555444
No 72
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=25.82 E-value=91 Score=14.95 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=16.4
Q ss_pred HHHHHHHcCChhhHHHHHHHHHH
Q 045628 100 QFREYCEAGNGEGCMKTFQLLKR 122 (142)
Q Consensus 100 ~lE~~~~~~~~~~~~~~~~~l~~ 122 (142)
-|...++.++.+++...+.++.+
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHccchHHHHHHHHHHHhH
Confidence 45667778888888877776653
No 73
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=25.67 E-value=2.6e+02 Score=20.23 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhccccc-----CChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHH
Q 045628 4 NQQLRRQLASMRQSLFDQ-----GHLDEQFILLEELQDDANPNFVEEVVTLHYRDSAR 56 (142)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-----g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~ 56 (142)
.+.||.-.+.-..++... .+|+. .-|..++...+=-++.+||.-|++++=.
T Consensus 5 L~eLR~~f~~Ik~~~q~kD~~~~vll~~--~ll~~~k~~~gC~~l~ell~FYLd~V~p 60 (137)
T smart00188 5 LRELRAAFSRVKTFFQMKDQLDNILLTE--SLLEDFKGYLGCQALSEMIQFYLEEVMP 60 (137)
T ss_pred HHHHHHHHHHHHHHHHccchHhhHhhhH--HHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 455555444444332222 23333 3355565555567999999999999843
No 74
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=25.36 E-value=2.1e+02 Score=19.06 Aligned_cols=77 Identities=27% Similarity=0.354 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHhcccccCChHHHHHHHHhhcc----cCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHH--HHH
Q 045628 3 RNQQLRRQLASMRQSLFDQGHLDEQFILLEELQD----DANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFN--KLD 76 (142)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~----~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~--~~~ 76 (142)
|-+.|..++..+.-. +..-++.-+.++..+.+ -|.+---.+++..++..-|.....+..++.... |.. .+.
T Consensus 24 ~~~~L~~~l~~~k~~--~~~sv~~y~~~~~~i~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~~~~~~i~~~~-~~~~~t~~ 100 (119)
T PF14223_consen 24 RVQQLKSQLENLKMK--DGESVDEYISRLKEIVDELRAIGKPISDEDLVSKILRSLPPSYDTFVTAIRNSK-DLPKMTLE 100 (119)
T ss_pred HHHHHHHHHHHHHhc--ccccHHHHHHHHHHhhhhhhhcCCcccchhHHHHHHhcCCchhHHHHHHHHhcC-CCCcCCHH
Confidence 445677777666522 22335554444443333 233333345666777777777777777776653 244 444
Q ss_pred HHhhhh
Q 045628 77 GYMHQF 82 (142)
Q Consensus 77 ~~aH~L 82 (142)
.+...|
T Consensus 101 el~~~L 106 (119)
T PF14223_consen 101 ELISRL 106 (119)
T ss_pred HHHHHH
Confidence 444443
No 75
>PLN02956 PSII-Q subunit
Probab=25.34 E-value=3.1e+02 Score=20.94 Aligned_cols=45 Identities=11% Similarity=0.001 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhccccc
Q 045628 41 NFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSST 87 (142)
Q Consensus 41 ~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~ 87 (142)
.+++-.|..=......++..+...+-.+| -+.+..++-.|+.+-.
T Consensus 109 ~yvrn~LRgp~s~Lr~DL~~Ii~slpp~D--rk~a~~La~~LFd~l~ 153 (185)
T PLN02956 109 KEAQKALRRSASNLKQDLYAIIQAKPGKD--RPQLRRLYSDLFNSVT 153 (185)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhcCHhH--hHHHHHHHHHHHHHHH
Confidence 34444444444444444545544444444 5555555555555443
No 76
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=25.13 E-value=1.2e+02 Score=24.36 Aligned_cols=25 Identities=4% Similarity=0.041 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Q 045628 40 PNFVEEVVTLHYRDSARLITTIERA 64 (142)
Q Consensus 40 ~~~l~ell~~Fl~d~~~~l~~L~~a 64 (142)
.+++.+|.+.|++++-.....|..-
T Consensus 178 edlLleiADdFV~sii~~sC~LAKH 202 (258)
T KOG1142|consen 178 EDLLLEIADDFVSSIIHRSCKLAKH 202 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888888887766666543
No 77
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=25.13 E-value=2.8e+02 Score=23.05 Aligned_cols=49 Identities=10% Similarity=-0.000 Sum_probs=31.4
Q ss_pred HHHHHHhcccccCChHH-HHHHHHhhcccCChHHHHHHHHHHHHhHHHHHH
Q 045628 10 QLASMRQSLFDQGHLDE-QFILLEELQDDANPNFVEEVVTLHYRDSARLIT 59 (142)
Q Consensus 10 ~~~~~~~~~~~~g~lD~-~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~ 59 (142)
.|..++..+-+.|.||. .+..|+...-+ +.---...|..|+...-..-.
T Consensus 101 aLRRlLKklRd~gKIDkh~YR~LYrKAKG-n~FKNK~~L~e~I~k~KaE~~ 150 (357)
T PTZ00436 101 ILRRLLRKYREEKKIDRHIYRELYVKAKG-NVFRNKRNLMEHIHKVKNEKK 150 (357)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhcC-CccCcHHHHHHHHHHHHHHHH
Confidence 34555666678899999 59999988763 333233455666666544433
No 78
>PF04400 DUF539: Protein of unknown function (DUF539); InterPro: IPR007495 This is a family of putative periplasmic proteins.
Probab=25.10 E-value=8.6 Score=22.62 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=14.9
Q ss_pred hhcccccccChHHHHHHHH
Q 045628 81 QFKGSSTSIGAKKVKAEST 99 (142)
Q Consensus 81 ~LKGss~~iGa~~L~~~c~ 99 (142)
.||||++.||+..+-..|.
T Consensus 7 ~I~GSCGGl~~lGi~~~C~ 25 (45)
T PF04400_consen 7 PIKGSCGGLGALGIDKECD 25 (45)
T ss_pred cccccchhhhhcCCCccCC
Confidence 5899999999877666554
No 79
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=25.04 E-value=1.8e+02 Score=18.01 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=21.0
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045628 107 AGNGEGCMKTFQLLKRDYATLRRKLEAYF 135 (142)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~L~~~l 135 (142)
..+...+...+..|...|..+...+..+.
T Consensus 72 ~~~~~~i~~~~~~l~~~w~~l~~~~~~r~ 100 (105)
T PF00435_consen 72 PEDSDEIQEKLEELNQRWEALCELVEERR 100 (105)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777788888888888887776554
No 80
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=24.45 E-value=1.9e+02 Score=21.79 Aligned_cols=36 Identities=8% Similarity=0.325 Sum_probs=29.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhh
Q 045628 45 EVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQF 82 (142)
Q Consensus 45 ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~L 82 (142)
.++.-|+++....+..|+.+++.+- ...+.-+|-+|
T Consensus 44 ~~ls~ylqEa~~tL~aL~~~~e~~~--l~q~afLAErL 79 (175)
T COG3923 44 QLLSFYLQEAGQTLTALKQAVEQDR--LPQVAFLAERL 79 (175)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHH
Confidence 4788999999999999999999987 66666666555
No 81
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=24.10 E-value=3.5e+02 Score=21.03 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=24.7
Q ss_pred CChHHHHHHH-------HHHHHhHHHHHHHHHHHHhcCCCCHHHHHHH
Q 045628 38 ANPNFVEEVV-------TLHYRDSARLITTIERALEKSPLDFNKLDGY 78 (142)
Q Consensus 38 ~~~~~l~ell-------~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~ 78 (142)
++|++..+|+ ...++.-.+.+.+++.+++++| .+.+.++
T Consensus 210 ~~p~l~~~I~~~N~~~~~~~l~~~~~~L~~l~~~l~~~d--~~~l~~~ 255 (258)
T PF02153_consen 210 SDPELWADIFLSNPENLLEALDEFIKELNELREALEAGD--EEELEEL 255 (258)
T ss_dssp S-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTS--HHHHHHH
T ss_pred CChHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHH
Confidence 4555555543 2344555566788888889998 7777654
No 82
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=24.05 E-value=1.5e+02 Score=24.16 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHh
Q 045628 46 VVTLHYRDSARLITTIERALEKSPLDFNKLDGYM 79 (142)
Q Consensus 46 ll~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~a 79 (142)
.+....+.+++.+..|..|+.++| ++.+.+.+
T Consensus 201 ~~~~~v~~~~~~l~~~~~ai~~~D--~~~~g~~~ 232 (305)
T TIGR01240 201 LFKEWIEHVVPDFEVXRKAIKTKD--FATFGKET 232 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHH
Confidence 456677788888999999999998 98887665
No 83
>COG4865 Glutamate mutase epsilon subunit [Amino acid transport and metabolism]
Probab=23.96 E-value=55 Score=27.77 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=32.4
Q ss_pred hcccccCChHHHHHHHHhhcccCChHHHHHHHHHHHHhH
Q 045628 16 QSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDS 54 (142)
Q Consensus 16 ~~~~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~ 54 (142)
|+..-..+||+.+.-|..+.+.|..+|+...|+.|-.+.
T Consensus 64 Qpragv~lLdehielL~tl~eeGqADlLp~tIDSyTR~N 102 (485)
T COG4865 64 QPRAGVALLDEHIELLKTLQEEGQADLLPSTIDSYTRLN 102 (485)
T ss_pred ccccCcchHHHHHHHHHHHHHhccccccchhhhhhhhhh
Confidence 344445789999999999999899999999999998776
No 84
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=23.83 E-value=2.3e+02 Score=20.84 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=43.9
Q ss_pred ChHH--HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcC---ChhhH
Q 045628 39 NPNF--VEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAG---NGEGC 113 (142)
Q Consensus 39 ~~~~--l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~---~~~~~ 113 (142)
||.| +-++++.+.++..+.+.++.+-+. .+|..+++....-++..+-.. + ..+
T Consensus 43 G~~F~~lHe~~ee~y~el~~~~DeiAERi~---------------------~LGg~p~~t~~~~~~~s~ike~~~~-~~~ 100 (156)
T COG0783 43 GPNFFALHEKLEELYEELAEHVDEIAERIR---------------------ALGGVPLGTLSEYLKLSSIKEEPGD-YTA 100 (156)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HcCCCCcccHHHHHHhCCCcccCCC-CCH
Confidence 5655 345566666666555555544443 334444444444444443332 3 457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045628 114 MKTFQLLKRDYATLRRKLEAYFQQ 137 (142)
Q Consensus 114 ~~~~~~l~~~~~~~~~~L~~~l~~ 137 (142)
.+.+..+...|..+...++..+..
T Consensus 101 ~~~l~~l~~~~~~l~~~~r~~~~~ 124 (156)
T COG0783 101 REMLKELVEDYEYLIKELRKGIEL 124 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777766654
No 85
>PRK14135 recX recombination regulator RecX; Provisional
Probab=23.07 E-value=3.6e+02 Score=20.89 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=22.9
Q ss_pred ccccCChHHHHHHHHhhcccCChHHHHHHHHHHHHh
Q 045628 18 LFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRD 53 (142)
Q Consensus 18 ~~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d 53 (142)
-++..+|+.+++.|....--+|..|....+...+..
T Consensus 85 g~~~~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~ 120 (263)
T PRK14135 85 EISEEIISEVIDKLKEEKYIDDKEYAESYVRTNINT 120 (263)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 445566777777766655555667777777666653
No 86
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=22.97 E-value=4.8e+02 Score=22.29 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcccccCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHH----HHHHHHhcCCCCHHHHHHHh
Q 045628 4 NQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLIT----TIERALEKSPLDFNKLDGYM 79 (142)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~----~L~~al~~~d~D~~~~~~~a 79 (142)
+..|...+..|+..+...|.++..+++-..-...-+. .....|.......+. -++.+-. ++|+.-+...+
T Consensus 237 ~~~L~~~ln~~L~~i~~~G~l~~L~~kyfg~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~ll~a~~ 310 (482)
T PRK10859 237 DDSLYAALLDFFNQIKEDGTLARLEEKYFGHVDRFDY----VDTRTFLRAIDNRLPKYQPLFEKYAG--ELDWRLLAAIA 310 (482)
T ss_pred CHHHHHHHHHHHHHhhcCCHHHHHHHHHhhhhhhcch----hhHHHHHHHHHHHhHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 5679999999999999989887754442211111121 222333333322222 2333333 57888888877
Q ss_pred hh
Q 045628 80 HQ 81 (142)
Q Consensus 80 H~ 81 (142)
|.
T Consensus 311 ~~ 312 (482)
T PRK10859 311 YQ 312 (482)
T ss_pred HH
Confidence 65
No 87
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=22.70 E-value=3.5e+02 Score=23.45 Aligned_cols=118 Identities=13% Similarity=0.119 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcccccCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCCCHHHHHHHh----
Q 045628 6 QLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEK--SPLDFNKLDGYM---- 79 (142)
Q Consensus 6 ~~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~--~d~D~~~~~~~a---- 79 (142)
-|+--+.+|+..+...|.||..+++-.. ..++-+.+ --..|+.-....|++++..+++ +++||-.++..|
T Consensus 220 tL~a~ll~F~~~~~e~g~larleeky~g--H~~~fdYv--dtr~f~~A~~~~Lp~~~pLfekya~e~dWrlLAAiaYQES 295 (473)
T COG4623 220 TLSAALLDFLNEAKEDGLLARLEEKYLG--HGDDFDYV--DTRTFLRAIDNRLPQLRPLFEKYAGELDWRLLAAIAYQES 295 (473)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHhc--cccccchh--hhHHHHHHHHhhhhhhhHHHHHhhccccHHHHHHHHHHHh
Confidence 4667788999999999999997776432 22333333 4567888888888888888864 667788877665
Q ss_pred hhhcccccccChHHHHHHHHHHHHHHHcC---Ch----hhHHHHHHHHHHHHHHH
Q 045628 80 HQFKGSSTSIGAKKVKAESTQFREYCEAG---NG----EGCMKTFQLLKRDYATL 127 (142)
Q Consensus 80 H~LKGss~~iGa~~L~~~c~~lE~~~~~~---~~----~~~~~~~~~l~~~~~~~ 127 (142)
|==-++.+.-|+..|.-+...-=....=+ |. .+....+..|...+.+.
T Consensus 296 HwnP~AtsptGvrGlMmLT~~TAqs~gv~dr~DpeqsI~ggs~YL~~i~~q~peS 350 (473)
T COG4623 296 HWNPQATSPTGVRGLMMLTKATAQSMGVSDRTDPEQSISGGSRYLQDIMSQVPES 350 (473)
T ss_pred ccCCCCCCCccchhhhhhhHHHHHhcCCCccCChhhhhhHHHHHHHHHHHhCccc
Confidence 44455666666666665544322211111 22 23455666666665543
No 88
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.39 E-value=3.4e+02 Score=20.25 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHhhhhcccccc
Q 045628 68 SPLDFNKLDGYMHQFKGSSTS 88 (142)
Q Consensus 68 ~d~D~~~~~~~aH~LKGss~~ 88 (142)
..||++.+..+||+|-..++.
T Consensus 79 ~~v~~~eLL~YA~rISk~t~~ 99 (188)
T PF10018_consen 79 RPVDYEELLSYAHRISKFTSA 99 (188)
T ss_pred CCCCHHHHHHHHHHHHHhcCC
Confidence 457899999999999877766
No 89
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=22.34 E-value=2.3e+02 Score=18.43 Aligned_cols=61 Identities=8% Similarity=0.091 Sum_probs=40.5
Q ss_pred HHHhcccccCChHH-HHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHH
Q 045628 13 SMRQSLFDQGHLDE-QFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDG 77 (142)
Q Consensus 13 ~~~~~~~~~g~lD~-~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~ 77 (142)
..+..+.+.|+++. ..+.+..-. ...+-...+++..-+-++..+...-.|+.... +..++.
T Consensus 20 ~v~~~L~~~~Vlt~~~~e~I~~~~--tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~--~~~LA~ 81 (84)
T cd08326 20 YLWDHLLSRGVFTPDMIEEIQAAG--SRRDQARQLLIDLETRGKQAFPAFLSALRETG--QTDLAE 81 (84)
T ss_pred HHHHHHHhcCCCCHHHHHHHHcCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--chHHHH
Confidence 34555666777777 466666543 34566778888888888888888888886543 444443
No 90
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=22.25 E-value=4.1e+02 Score=21.21 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=43.0
Q ss_pred HHHHHHhhhhcccccc----cChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 045628 73 NKLDGYMHQFKGSSTS----IGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAY 134 (142)
Q Consensus 73 ~~~~~~aH~LKGss~~----iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~ 134 (142)
....+++|.+..++-. +|=..+-.+|..+|..|..=-..++...+..+.+.|..+...|..|
T Consensus 134 ~~~~~~avA~vlG~~m~~e~~~d~dvevLL~~ae~L~~vYP~~ga~eki~~Lr~~y~~l~~~i~~l 199 (259)
T PF08657_consen 134 KQRRNTAVALVLGGVMHEEIVEDVDVEVLLRGAEKLCNVYPLPGAREKIAALRQRYNQLSNSIAYL 199 (259)
T ss_pred HHHHHHHHHHhccCcccccccccCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555533 3555667788888888887555588888888888888888777654
No 91
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=22.01 E-value=3.8e+02 Score=20.78 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 045628 93 KVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAY 134 (142)
Q Consensus 93 ~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~ 134 (142)
.+...|...-.+.+.|+.+.+...+......+..++..|..|
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~ 69 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGF 69 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445555555555566665555555555555555555544
No 92
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=21.77 E-value=1.6e+02 Score=20.41 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHc
Q 045628 39 NPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEA 107 (142)
Q Consensus 39 ~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~ 107 (142)
+|.|- ...|+..+.+.+..+..|..++| ...++.++ +-.-+..++..+......
T Consensus 12 dp~Fd---~~~F~~~ak~~f~~i~~A~~~~D--~~~l~~~~----------t~~~~~~~~~~i~~~~~~ 65 (147)
T PF04280_consen 12 DPGFD---PAAFLEEAKEAFLPIQEAWAKGD--LEALRPLL----------TEELYERLQAEIKARRSR 65 (147)
T ss_dssp -TT-----HHHHHHHHHHTHHHHHHHHHHT---HHHHHHHB-----------HHHHHHHHHHHHHHHHT
T ss_pred CCCCC---HHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHh----------CHHHHHHHHHHHHHHHHc
Confidence 56664 67889999999999999999998 87777554 333444555555554333
No 93
>COG2747 FlgM Negative regulator of flagellin synthesis (anti-sigma28 factor) [Transcription / Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.10 E-value=1.4e+02 Score=20.16 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCC--CCHHHHHH
Q 045628 54 SARLITTIERALEKSP--LDFNKLDG 77 (142)
Q Consensus 54 ~~~~l~~L~~al~~~d--~D~~~~~~ 77 (142)
..+.+++|++||++|. ||...++.
T Consensus 59 ~~~kVeeiK~aI~~G~ykvD~~kiAd 84 (93)
T COG2747 59 REEKVEELKQAIENGEYKVDTEKIAD 84 (93)
T ss_pred hHHHHHHHHHHHHcCCeeecHHHHHH
Confidence 4568999999999998 56666553
No 94
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.02 E-value=1.3e+02 Score=14.83 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=16.3
Q ss_pred HHHHHHHcCChhhHHHHHHHHHH
Q 045628 100 QFREYCEAGNGEGCMKTFQLLKR 122 (142)
Q Consensus 100 ~lE~~~~~~~~~~~~~~~~~l~~ 122 (142)
-|...++.|+.+.+...+..+++
T Consensus 7 ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 7 LLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 35566777888887777777654
No 95
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=20.98 E-value=5e+02 Score=21.68 Aligned_cols=79 Identities=4% Similarity=0.018 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhccc-ccccChHHHHHHHHHHHHHHHcCChhhHHHH
Q 045628 38 ANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGS-STSIGAKKVKAESTQFREYCEAGNGEGCMKT 116 (142)
Q Consensus 38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGs-s~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~ 116 (142)
++.+.+..+-+.|.--+...+.....++...+ |.......+.|... +.......+..+|.....+-+- +..++...
T Consensus 115 ~Gte~l~~~~~p~~~~~~~~~~~a~~l~n~~~--y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~f-d~~~A~~~ 191 (379)
T PF09670_consen 115 PGTERLRELENPYEVFGDREWRRAKELFNRYD--YGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRF-DHKEALEY 191 (379)
T ss_pred CcchhhhhcCCHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHcc-CHHHHHHH
Confidence 45677777877887777788999999999998 99999999999886 5555577888999988887654 34444444
Q ss_pred HHH
Q 045628 117 FQL 119 (142)
Q Consensus 117 ~~~ 119 (142)
++.
T Consensus 192 l~~ 194 (379)
T PF09670_consen 192 LEK 194 (379)
T ss_pred HHH
Confidence 443
No 96
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=20.98 E-value=1.2e+02 Score=14.65 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=17.1
Q ss_pred HHHHHHHcCChhhHHHHHHHHHH
Q 045628 100 QFREYCEAGNGEGCMKTFQLLKR 122 (142)
Q Consensus 100 ~lE~~~~~~~~~~~~~~~~~l~~ 122 (142)
-|...++.++.+.+...+..++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 35667888888888888777654
No 97
>PRK08818 prephenate dehydrogenase; Provisional
Probab=20.97 E-value=2.4e+02 Score=23.69 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccc
Q 045628 42 FVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSS 86 (142)
Q Consensus 42 ~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss 86 (142)
.+.+.++.| .+.+.+++.+++++| ++.+.+..|++.-+-
T Consensus 228 ~i~~~l~~~----~~~L~~l~~~i~~~D--~~~~~~~~~~f~~a~ 266 (370)
T PRK08818 228 YVGEMLDRL----LAQLQELRALVAQGD--DAARARFRAQFLHAN 266 (370)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHH
Confidence 344444444 456788889999998 988888866665443
No 98
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=20.61 E-value=5.4e+02 Score=21.94 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHhcccccCChHH-HHHHHHhhccc--CChHHHHHHHHHHHHhHHHHHHHHHHH
Q 045628 3 RNQQLRRQLASMRQSLFDQGHLDE-QFILLEELQDD--ANPNFVEEVVTLHYRDSARLITTIERA 64 (142)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~g~lD~-~~~~L~~L~~~--~~~~~l~ell~~Fl~d~~~~l~~L~~a 64 (142)
+.+++-....-|..-+.+.|+|+. ..+.|.+--.. -+.+-+.++-..+-.+.......|.+.
T Consensus 24 ~~~~~l~ve~A~a~~l~~~Giip~~~a~~I~~~l~~~~i~~~~~~~~~~~~~~~v~~~e~~L~~~ 88 (449)
T PRK08540 24 KLQKMLDVEAALARAEAELGLIPEEAAEEINRKASTKYVKLERVKEIEAEIHHDIMAVVKALSEV 88 (449)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 456666667777778888899977 45555432221 244444444444444444334444433
No 99
>PF13171 DUF4004: Protein of unknown function (DUF4004)
Probab=20.47 E-value=4.1e+02 Score=20.53 Aligned_cols=95 Identities=12% Similarity=0.182 Sum_probs=58.1
Q ss_pred HHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcC
Q 045628 29 ILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAG 108 (142)
Q Consensus 29 ~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~ 108 (142)
+.+..|.+ .--+.+|-++|--+.....-.-...+..+-| -..+.+.--..-|....+....+..+.. ++..-++|
T Consensus 57 ekI~~mKd---~~SLDELA~mfSp~~~~~~~~~~~l~~~~iv-s~~~~~~f~~~~~~~~~f~f~e~l~lyv-l~~ll~sg 131 (199)
T PF13171_consen 57 EKIQKMKD---DLSLDELAEMFSPNVSDVVFTEEELLKRNIV-SQAVLELFMEQIGEEEEFSFEELLFLYV-LEKLLQSG 131 (199)
T ss_pred HHHHHhcc---cCCHHHHHHHcCCCcccceecHHHHHHcCcc-cHHHHHHHHHHhCccccccHHHHHHHHH-HHHHHHhC
Confidence 33444543 3346778888844443333344445555544 2333444444455777888888776654 88888888
Q ss_pred --ChhhHHHHHHHHHHHHHHHH
Q 045628 109 --NGEGCMKTFQLLKRDYATLR 128 (142)
Q Consensus 109 --~~~~~~~~~~~l~~~~~~~~ 128 (142)
+.++....+.-+.+.|..+.
T Consensus 132 ~is~eE~k~l~~~l~~~~~~~~ 153 (199)
T PF13171_consen 132 EISLEEGKMLLQFLEENYPKFE 153 (199)
T ss_pred CCCHHHHHHHHHHHHHHHHHHh
Confidence 55677777888888776653
No 100
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.31 E-value=3.8e+02 Score=20.06 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=37.9
Q ss_pred HHhcCCCCHHHHHHHhhhhcccc-cccChHHHHHHH----HHHHHHHHcCC--hhhHHHHHHHHHHHHHHHHHHH
Q 045628 64 ALEKSPLDFNKLDGYMHQFKGSS-TSIGAKKVKAES----TQFREYCEAGN--GEGCMKTFQLLKRDYATLRRKL 131 (142)
Q Consensus 64 al~~~d~D~~~~~~~aH~LKGss-~~iGa~~L~~~c----~~lE~~~~~~~--~~~~~~~~~~l~~~~~~~~~~L 131 (142)
+-++|| ||..++ .||.|.|.. -.+.-.-|.... ..+|..-...+ ...-.+++..|.+.|......-
T Consensus 43 Ak~~GD-DWDk~R-aA~~laggg~e~v~~~~l~~f~~Q~~~tmeel~~~~~~~~~~k~~~LasLaDsf~K~vaas 115 (165)
T PF08822_consen 43 AKAKGD-DWDKAR-AAHTLAGGGIEDVARQMLEDFVVQYQATMEELKENEDMPPQEKVELLASLADSFSKMVAAS 115 (165)
T ss_pred HHHcCC-cHHHHH-HHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788 899876 677777632 222222222222 23555544443 3456677888888887765543
No 101
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=20.00 E-value=3e+02 Score=18.71 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhccc--------ccccChH---HHHHHHHHHHHHHHcCChh
Q 045628 43 VEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGS--------STSIGAK---KVKAESTQFREYCEAGNGE 111 (142)
Q Consensus 43 l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGs--------s~~iGa~---~L~~~c~~lE~~~~~~~~~ 111 (142)
...-+..+.++..+.+..+.+.+.++| |+......=.+... +-.+--. .+...-.++..+...+|..
T Consensus 17 ~~~~l~~~~~~i~~~l~~i~~~i~~~d--W~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~~dk~ 94 (121)
T PF14276_consen 17 SNNYLNNSTDSIEEQLEQIEEAIENED--WEKAYKETEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEAKDKS 94 (121)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 344556667788888899999999887 88887766555443 2223322 2333344555666666776
Q ss_pred hHHHHHHHHHHHHHHH
Q 045628 112 GCMKTFQLLKRDYATL 127 (142)
Q Consensus 112 ~~~~~~~~l~~~~~~~ 127 (142)
.+...+..++..+..+
T Consensus 95 ~~l~el~~lk~~i~~i 110 (121)
T PF14276_consen 95 ESLAELAELKELIEHI 110 (121)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655544
Done!