Query 045628
Match_columns 142
No_of_seqs 129 out of 650
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:17:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 6.5E-34 2.2E-38 208.6 14.9 138 1-139 1-138 (153)
2 1yvi_A Histidine-containing ph 100.0 4.4E-32 1.5E-36 197.8 14.8 136 4-139 3-139 (149)
3 2r25_A Phosphorelay intermedia 99.9 3E-26 1E-30 169.6 12.6 119 17-138 2-166 (167)
4 2a0b_A HPT domain; sensory tra 99.9 3.7E-22 1.3E-26 140.7 9.7 117 18-139 6-123 (125)
5 3myf_A Sensor protein; HPT, hi 99.8 1.2E-19 4.1E-24 127.6 14.0 114 19-137 1-115 (119)
6 3iqt_A Signal transduction his 99.8 2.9E-19 9.8E-24 126.4 12.2 110 21-135 12-122 (123)
7 1y6d_A Phosphorelay protein LU 99.8 4.1E-20 1.4E-24 130.1 -0.9 105 28-134 14-118 (120)
8 2ooc_A Histidine phosphotransf 99.7 2.3E-18 8E-23 119.9 6.8 105 22-141 9-113 (113)
9 1sr2_A Putative sensor-like hi 99.7 5.3E-17 1.8E-21 113.7 7.5 87 39-127 29-115 (116)
10 1tqg_A Chemotaxis protein CHEA 99.6 8.7E-15 3E-19 99.8 9.0 89 43-133 3-102 (105)
11 2ld6_A Chemotaxis protein CHEA 99.4 1.3E-13 4.5E-18 98.8 6.2 90 44-135 3-103 (139)
12 1i5n_A Chemotaxis protein CHEA 99.4 4.2E-13 1.5E-17 96.9 7.2 91 44-134 6-105 (146)
13 2lch_A Protein OR38; structura 99.4 8.2E-13 2.8E-17 91.3 7.3 89 44-132 5-102 (113)
14 3kyj_A CHEA3, putative histidi 99.1 6.3E-10 2.2E-14 80.2 8.8 92 43-134 9-109 (144)
15 2lp4_A Chemotaxis protein CHEA 98.8 2.8E-08 9.5E-13 76.1 9.0 88 44-131 6-102 (225)
16 3ls0_A SLL1638 protein, PSBQ; 89.4 3.4 0.00012 28.8 8.7 79 51-138 32-129 (133)
17 3zsu_A TLL2057 protein, cyanoq 87.6 3.2 0.00011 28.9 7.6 77 52-137 31-125 (130)
18 1vyk_A Oxygen-evolving enhance 86.7 6.7 0.00023 27.8 9.2 78 51-130 52-147 (149)
19 4igg_A Catenin alpha-1; asymme 79.5 25 0.00086 31.4 11.7 109 25-136 288-422 (832)
20 3hho_A CO-chaperone protein HS 76.9 12 0.00041 26.8 7.5 38 43-82 118-155 (174)
21 2cw9_A Translocase of inner mi 69.6 6.7 0.00023 28.6 4.7 83 7-108 21-104 (194)
22 1gp8_A Protein (scaffolding pr 68.9 5.8 0.0002 21.8 3.1 23 60-84 16-38 (40)
23 1fpo_A HSC20, chaperone protei 67.4 19 0.00066 25.6 6.7 38 95-133 126-163 (171)
24 3uo3_A J-type CO-chaperone JAC 65.6 21 0.00073 25.7 6.7 40 93-133 133-172 (181)
25 3bvo_A CO-chaperone protein HS 65.4 22 0.00077 26.1 6.9 39 43-83 153-191 (207)
26 2f4m_B UV excision repair prot 55.6 14 0.00047 22.2 3.4 35 27-62 12-46 (61)
27 1wjt_A Transcription elongatio 54.2 22 0.00075 23.4 4.6 38 84-121 4-41 (103)
28 2di0_A Activating signal coint 46.2 28 0.00096 21.5 3.8 41 22-62 11-51 (71)
29 2vs0_A Virulence factor ESXA; 43.7 53 0.0018 20.0 6.3 19 71-89 7-25 (97)
30 3gwk_C SAG1039, putative uncha 43.0 57 0.0019 20.1 6.2 14 39-52 9-22 (98)
31 3zbh_A ESXA; unknown function, 42.8 51 0.0017 20.1 4.9 14 39-52 10-23 (99)
32 3do9_A UPF0302 protein BA_1542 37.0 76 0.0026 23.1 5.6 39 42-84 141-179 (188)
33 3err_A Fusion protein of micro 36.6 1.3E+02 0.0044 25.4 7.6 88 38-135 116-207 (536)
34 3qk9_A Mitochondrial import in 33.8 14 0.00048 27.7 1.2 56 38-108 71-127 (222)
35 2qsf_X RAD23, UV excision repa 33.3 40 0.0014 24.3 3.5 36 26-62 33-68 (171)
36 3iqc_A FLIS, flagellar protein 31.5 1.2E+02 0.0041 20.5 9.6 82 44-127 26-125 (131)
37 3dyj_A Talin-1; helix bundles, 27.6 1.5E+02 0.0051 23.6 6.2 62 43-107 65-139 (332)
38 3fyq_A CG6831-PA (talin); 5-he 27.6 1.8E+02 0.0063 21.3 6.4 58 47-107 60-130 (199)
39 1pve_A HHR23B, UV excision rep 27.0 28 0.00097 21.5 1.5 35 27-62 14-48 (72)
40 1ylm_A Hypothetical protein BS 24.9 1.2E+02 0.0043 20.1 4.8 50 18-67 75-135 (144)
41 2p1h_A APAF-1, apoptotic prote 23.7 1.2E+02 0.0042 18.6 4.3 41 38-80 50-90 (94)
42 3p9y_A CG14216, LD40846P; phos 23.5 63 0.0021 23.9 3.1 17 87-103 152-168 (198)
43 3t0y_B NEPR; sigma factor, ant 22.1 40 0.0014 20.6 1.5 34 3-36 30-63 (68)
44 3de8_A Soluble cytochrome B562 21.1 1.7E+02 0.0057 18.6 4.8 36 91-126 65-100 (106)
45 2kmf_A Photosystem II 11 kDa p 20.2 2E+02 0.0069 19.2 8.6 85 48-133 14-113 (115)
46 3fkr_A L-2-keto-3-deoxyarabona 20.1 1.3E+02 0.0044 23.1 4.5 42 83-124 210-251 (309)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=100.00 E-value=6.5e-34 Score=208.65 Aligned_cols=138 Identities=42% Similarity=0.742 Sum_probs=130.8
Q ss_pred ChhHHHHHHHHHHHHhcccccCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhh
Q 045628 1 MERNQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMH 80 (142)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH 80 (142)
|+++ +|+.++..|+++++++|+||++|++|..|.++++|+|+.++|..|++++++.+..|+.+++.+++|++.+.++||
T Consensus 1 ~~~~-~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH 79 (153)
T 3us6_A 1 MEVG-QMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVH 79 (153)
T ss_dssp -CHH-HHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred CcHH-HHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 4444 589999999999999999999999999999989999999999999999999999999999998445999999999
Q ss_pred hhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045628 81 QFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQAL 139 (142)
Q Consensus 81 ~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~ 139 (142)
+|||||+|+||.+|+.+|..||.+|+.++.+++...+.+++.+|.+++.+|++|++.++
T Consensus 80 ~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~ 138 (153)
T 3us6_A 80 QFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQ 138 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999765
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=100.00 E-value=4.4e-32 Score=197.78 Aligned_cols=136 Identities=42% Similarity=0.747 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHhcccccCChHHHHHHHHhhcccCC-hHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhh
Q 045628 4 NQQLRRQLASMRQSLFDQGHLDEQFILLEELQDDAN-PNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQF 82 (142)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~~~~-~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~L 82 (142)
..+|+++++.|++++++.|+||+.|++|..|+++++ |+|+.+||..|++++++.+..|..|++.+++|+..+..++|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~L 82 (149)
T 1yvi_A 3 AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQL 82 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 358999999999999999999999999999987778 9999999999999999999999999998855699999999999
Q ss_pred cccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045628 83 KGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQAL 139 (142)
Q Consensus 83 KGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~ 139 (142)
||||+||||.+|+.+|..||.+++.++.+.+...+.+++.+|.+++.+|++|++.++
T Consensus 83 KGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~ 139 (149)
T 1yvi_A 83 KGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQ 139 (149)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998764
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.94 E-value=3e-26 Score=169.55 Aligned_cols=119 Identities=15% Similarity=0.265 Sum_probs=110.7
Q ss_pred cccccCChHH-HHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHh-cCCCCHHHHHHHhhhhcccccccChHHH
Q 045628 17 SLFDQGHLDE-QFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALE-KSPLDFNKLDGYMHQFKGSSTSIGAKKV 94 (142)
Q Consensus 17 ~~~~~g~lD~-~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~-~~d~D~~~~~~~aH~LKGss~~iGa~~L 94 (142)
++.+.|+||. +|.+|+.|++++ |+|+.+||..|++++++.+..|+.|++ .+| +..+..++|+|||||+||||.+|
T Consensus 2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~D--~~~L~~~aH~LKGSSAnLGA~rV 78 (167)
T 2r25_A 2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEKN--LTELDNLGHFLKGSSAALGLQRI 78 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhcccC--HHHHHHHHHhhhhhHHHHHHHHH
Confidence 4567899998 899999998866 999999999999999999999999999 776 99999999999999999999999
Q ss_pred HHHHHHHHHHHHcCC------------hh--------------------------------hHHHHHHHHHHHHHHHHHH
Q 045628 95 KAESTQFREYCEAGN------------GE--------------------------------GCMKTFQLLKRDYATLRRK 130 (142)
Q Consensus 95 ~~~c~~lE~~~~~~~------------~~--------------------------------~~~~~~~~l~~~~~~~~~~ 130 (142)
+.+|.+||.+|+.++ .+ .+...+.+++.+|..++.+
T Consensus 79 ~~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~ 158 (167)
T 2r25_A 79 AWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIE 158 (167)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 44 6889999999999999999
Q ss_pred HHHHHHHh
Q 045628 131 LEAYFQQA 138 (142)
Q Consensus 131 L~~~l~~~ 138 (142)
|++|++.+
T Consensus 159 L~~~~~~~ 166 (167)
T 2r25_A 159 LSKYYNTN 166 (167)
T ss_dssp HHHHTTSC
T ss_pred HHHHHccc
Confidence 99998643
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.87 E-value=3.7e-22 Score=140.69 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=106.7
Q ss_pred ccccCChHH-HHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHH
Q 045628 18 LFDQGHLDE-QFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKA 96 (142)
Q Consensus 18 ~~~~g~lD~-~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~ 96 (142)
+.+.++||. ++.+|..+ .+++++.+++..|++++++.+..|..++..+| +..+.+.||+|||||+++|+.+|+.
T Consensus 6 ~~~~~~lD~~~l~~l~~~---~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~d--~~~~~~~aH~LKGsa~~lG~~~l~~ 80 (125)
T 2a0b_A 6 SKSEALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLTAQD--KKGIVEEGHKIKGAAGSVGLRHLQQ 80 (125)
T ss_dssp CHHHHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 445577888 47776665 57899999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 045628 97 ESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQAL 139 (142)
Q Consensus 97 ~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~ 139 (142)
+|..+|..++.++.+.+...+..+...|.++...|+.|+....
T Consensus 81 ~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~ 123 (125)
T 2a0b_A 81 LGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKAT 123 (125)
T ss_dssp HHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999987643
No 5
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.83 E-value=1.2e-19 Score=127.56 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=100.9
Q ss_pred cccCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHH
Q 045628 19 FDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAES 98 (142)
Q Consensus 19 ~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c 98 (142)
|+-.++|.. .+.++- +|++++..+|+.+|+++.|+.+..|+.+++.+| ++.+..++|+|||+|+++|+.+|..+|
T Consensus 1 ~~~~~~D~~--~~l~~~-~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~d--~~~l~~~aHkLkGaa~~~Ga~~L~~~~ 75 (119)
T 3myf_A 1 FDLHTLNWD--LCLTQA-NHKSNLALEMLKMLLDSLPETVEKIQTALGQND--QATMLSTIHKLHGASCYCGVPTTQRLC 75 (119)
T ss_dssp -CTTTCCHH--HHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCccccCHH--HHHHHh-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 344566663 223333 489999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045628 99 TQFREYCEAGNG-EGCMKTFQLLKRDYATLRRKLEAYFQQ 137 (142)
Q Consensus 99 ~~lE~~~~~~~~-~~~~~~~~~l~~~~~~~~~~L~~~l~~ 137 (142)
..||.+++.+.. +.+.+.+..+..++..+..+++.|+..
T Consensus 76 ~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 76 QEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999864 688899999999999999999999985
No 6
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.81 E-value=2.9e-19 Score=126.39 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=98.1
Q ss_pred cCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHH
Q 045628 21 QGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQ 100 (142)
Q Consensus 21 ~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~ 100 (142)
.+++|.. .+..+- +|++++..+|+.+|+++.++++..|+.++..+| ++.+..++|+|||||+++|+.+|..+|..
T Consensus 12 ~~~~D~~--~~l~~a-~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~d--~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~ 86 (123)
T 3iqt_A 12 NATLDWQ--LALRQA-AGKTDLARDMLQMLLDFLPEVRNKVEEQLVGEN--PEGLVDLIHKLHGSCGYSGVPRMKNLCQL 86 (123)
T ss_dssp GGTCCHH--HHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCccCHH--HHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3556663 333433 489999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHHcCChh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 045628 101 FREYCEAGNGE-GCMKTFQLLKRDYATLRRKLEAYF 135 (142)
Q Consensus 101 lE~~~~~~~~~-~~~~~~~~l~~~~~~~~~~L~~~l 135 (142)
||.++++++.. .+.+.+..+..++..+..+.+.|+
T Consensus 87 LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~ 122 (123)
T 3iqt_A 87 IEQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL 122 (123)
T ss_dssp HHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998664 888999999999999999998886
No 7
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.75 E-value=4.1e-20 Score=130.09 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=86.0
Q ss_pred HHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHc
Q 045628 28 FILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEA 107 (142)
Q Consensus 28 ~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~ 107 (142)
|.+|..|++..+|+++.+++..|++++++.|..|..+...++ ...+.+.+|+|||||+++|+.+|+.+|..+|..+|+
T Consensus 14 ~~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~~--~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~lE~~~r~ 91 (120)
T 1y6d_A 14 QQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSEQ--LLYLKEISHALKSSAASFGADRLCERAIAIDKKAKA 91 (120)
T ss_dssp TTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHHH--HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccch--HHHHHHHHHHHhhhHHHhCHHHHHHHHHHHHHHHhC
Confidence 445666666568999999999999999999999999887776 888999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHH
Q 045628 108 GNGEGCMKTFQLLKRDYATLRRKLEAY 134 (142)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~~~~L~~~ 134 (142)
|+...+......+...+.++...++.+
T Consensus 92 g~~~~~~~~~~~l~~~l~~~~d~l~~~ 118 (120)
T 1y6d_A 92 NQLQEQGMETSEMLALLHITRDAYRSW 118 (120)
T ss_dssp HHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred CChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 877744444455555555555555544
No 8
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.74 E-value=2.3e-18 Score=119.93 Aligned_cols=105 Identities=17% Similarity=0.214 Sum_probs=88.3
Q ss_pred CChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHH
Q 045628 22 GHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQF 101 (142)
Q Consensus 22 g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~l 101 (142)
+.+|.. .|..+. .||++|+.+|+..|++++++.+..|..+ ..+ | .++||+|||||++|||.+|..+|..+
T Consensus 9 ~~iD~~--~L~~~~-~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~~--~---~~~aH~LKGsA~~iGA~~l~~~c~~l 78 (113)
T 2ooc_A 9 GAVDFA--YLEGFA-AGDFAVVDEVLALFREQAALWAPMLDPT--HPG--W---KDAVHTVKGAARGVGAFNLGEVCERC 78 (113)
T ss_dssp CCSCHH--HHHHHT-TTCHHHHHHHHHHHHHHHHHHGGGCSTT--STT--H---HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcCHH--HHHhHh-CCCHHHHHHHHHHHHHHhHHHHHHHHHh--hHH--H---HHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 445652 333333 4899999999999999999999999988 333 5 89999999999999999999999999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 045628 102 REYCEAGNGEGCMKTFQLLKRDYATLRRKLEAYFQQALPG 141 (142)
Q Consensus 102 E~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~ 141 (142)
|..++. ....+..|+..+.++..+|...++...+|
T Consensus 79 E~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~~~~~~ 113 (113)
T 2ooc_A 79 EAGQES-----LEGVRTALDAALLDIAAYAHEQALRSLKG 113 (113)
T ss_dssp HTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 998877 56678899999999999999999877766
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.69 E-value=5.3e-17 Score=113.66 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcCChhhHHHHHH
Q 045628 39 NPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQ 118 (142)
Q Consensus 39 ~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~ 118 (142)
.+..-.+++..|+++.++++..|..+++.+| +..++.++|+|||+++++|+..|+.+|..+|.+++.++...+...+.
T Consensus 29 k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~D--~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i~ 106 (116)
T 1sr2_A 29 AQLHASGYYALFVDTVPDDVKRLYTEAATSD--FAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYIS 106 (116)
T ss_dssp HHHHHHTTHHHHTTTHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhchHHHHHHHHHHhHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3466788999999999999999999999998 99999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHH
Q 045628 119 LLKRDYATL 127 (142)
Q Consensus 119 ~l~~~~~~~ 127 (142)
.|...+.++
T Consensus 107 ~L~~~l~~L 115 (116)
T 1sr2_A 107 DIDSYVKSL 115 (116)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888777654
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.58 E-value=8.7e-15 Score=99.82 Aligned_cols=89 Identities=9% Similarity=0.119 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHh--------cCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHH---HcCChh
Q 045628 43 VEEVVTLHYRDSARLITTIERALE--------KSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYC---EAGNGE 111 (142)
Q Consensus 43 l~ell~~Fl~d~~~~l~~L~~al~--------~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~---~~~~~~ 111 (142)
+.+++..|++++++.+..|..++. ..+ +..+.+.+|+|||||+++|+..+..+|..+|... +.++..
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~--~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~ 80 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMEL--INEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIK 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999996 333 7899999999999999999999999999999876 777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 045628 112 GCMKTFQLLKRDYATLRRKLEA 133 (142)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~L~~ 133 (142)
.....+..+...+..+...+..
T Consensus 81 ~~~~~~~~l~~~~d~l~~~l~~ 102 (105)
T 1tqg_A 81 ITSDLLDKIFAGVDMITRMVDK 102 (105)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888777776654
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.44 E-value=1.3e-13 Score=98.81 Aligned_cols=90 Identities=10% Similarity=0.137 Sum_probs=74.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHh--------cCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHH---HcCChhh
Q 045628 44 EEVVTLHYRDSARLITTIERALE--------KSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYC---EAGNGEG 112 (142)
Q Consensus 44 ~ell~~Fl~d~~~~l~~L~~al~--------~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~---~~~~~~~ 112 (142)
.+++..|++++++.+..|..++. .. ++..+.+.+|+|||||+++|+..++.+|..+|... |.+....
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~--~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~ 80 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKI 80 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSS--HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 57999999999999999999994 23 38999999999999999999999999999999865 6776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045628 113 CMKTFQLLKRDYATLRRKLEAYF 135 (142)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~L~~~l 135 (142)
....+..+...+..+...+...-
T Consensus 81 ~~~l~~~l~~~~D~l~~~l~~~~ 103 (139)
T 2ld6_A 81 TSDLLDKIFAGVDMITRMVDKIV 103 (139)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666667766666665543
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.41 E-value=4.2e-13 Score=96.94 Aligned_cols=91 Identities=14% Similarity=0.270 Sum_probs=72.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhcC-----C-CCHHHHHHHhhhhcccccccChHHHHHHHHHHHHH---HHcCChhhHH
Q 045628 44 EEVVTLHYRDSARLITTIERALEKS-----P-LDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREY---CEAGNGEGCM 114 (142)
Q Consensus 44 ~ell~~Fl~d~~~~l~~L~~al~~~-----d-~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~---~~~~~~~~~~ 114 (142)
.+++..|++++++.+..|..++..- | -++..+.+.+|+|||||+++|+..++.+|..+|.. .|.+......
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~ 85 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 4789999999999999999999321 1 02689999999999999999999999999999987 7777766555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045628 115 KTFQLLKRDYATLRRKLEAY 134 (142)
Q Consensus 115 ~~~~~l~~~~~~~~~~L~~~ 134 (142)
..+..+...+..+...+..+
T Consensus 86 ~l~~~l~~~~D~l~~~l~~~ 105 (146)
T 1i5n_A 86 DIINLFLETKDIMQEQLDAY 105 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666555555443
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.39 E-value=8.2e-13 Score=91.27 Aligned_cols=89 Identities=13% Similarity=0.176 Sum_probs=71.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhc-----CC-CCHHHHHHHhhhhcccccccChHHHHHHHHHHHH---HHHcCChhhHH
Q 045628 44 EEVVTLHYRDSARLITTIERALEK-----SP-LDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFRE---YCEAGNGEGCM 114 (142)
Q Consensus 44 ~ell~~Fl~d~~~~l~~L~~al~~-----~d-~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~---~~~~~~~~~~~ 114 (142)
.+++..|++++++.+..|..++.. .| -+...+.+.+|+|||||+++|+..++.+|..+|. ..+.+......
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~ 84 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITS 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 589999999999999999999842 11 0256799999999999999999999999999996 55677666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045628 115 KTFQLLKRDYATLRRKLE 132 (142)
Q Consensus 115 ~~~~~l~~~~~~~~~~L~ 132 (142)
..+..+...+..+...+.
T Consensus 85 ~l~~~l~~~~d~l~~~l~ 102 (113)
T 2lch_A 85 DLIDKVKKKLDMVTRELD 102 (113)
T ss_dssp HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777777766655544
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=99.07 E-value=6.3e-10 Score=80.21 Aligned_cols=92 Identities=22% Similarity=0.224 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhc---CCCC---HHHHHHHhhhhcccccccChHHHHHHHHHHHHHH---HcCChhhH
Q 045628 43 VEEVVTLHYRDSARLITTIERALEK---SPLD---FNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYC---EAGNGEGC 113 (142)
Q Consensus 43 l~ell~~Fl~d~~~~l~~L~~al~~---~d~D---~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~---~~~~~~~~ 113 (142)
..+++..|++++++.+..|...+.. +..| ...+.+.+|+|||+|+++|+..+..+|..+|... +.+...--
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~ 88 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD 88 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4689999999999999999998842 2112 4679999999999999999999999999999754 56655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045628 114 MKTFQLLKRDYATLRRKLEAY 134 (142)
Q Consensus 114 ~~~~~~l~~~~~~~~~~L~~~ 134 (142)
...+..+...+..+...+..+
T Consensus 89 ~~l~dlll~~~D~l~~lv~~~ 109 (144)
T 3kyj_A 89 GEIVEILLFASDTLRAMLEET 109 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555566666665555555444
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.78 E-value=2.8e-08 Score=76.08 Aligned_cols=88 Identities=14% Similarity=0.252 Sum_probs=65.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhc---CCCC---HHHHHHHhhhhcccccccChHHHHHHHHHHHHHH---HcCChhhHH
Q 045628 44 EEVVTLHYRDSARLITTIERALEK---SPLD---FNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYC---EAGNGEGCM 114 (142)
Q Consensus 44 ~ell~~Fl~d~~~~l~~L~~al~~---~d~D---~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~---~~~~~~~~~ 114 (142)
.+++..|++++.+.+..|...+.. +..| ...+.+.+|+|||||+.+|+..+..+|..+|..- |+|...--.
T Consensus 6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~ 85 (225)
T 2lp4_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (225)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 478999999999999999998843 2112 4688899999999999999999999999999554 555544334
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045628 115 KTFQLLKRDYATLRRKL 131 (142)
Q Consensus 115 ~~~~~l~~~~~~~~~~L 131 (142)
..+.-+...+..+...+
T Consensus 86 ~~~~ll~~~~D~l~~~l 102 (225)
T 2lp4_A 86 DIINLFLETKDIMQEQL 102 (225)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 16
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=89.35 E-value=3.4 Score=28.84 Aligned_cols=79 Identities=13% Similarity=0.184 Sum_probs=52.0
Q ss_pred HHhHHHHHHH-HHHHHhcCCCCHHHHHHHhhhhccccc--------cc----------ChHHHHHHHHHHHHHHHcCChh
Q 045628 51 YRDSARLITT-IERALEKSPLDFNKLDGYMHQFKGSST--------SI----------GAKKVKAESTQFREYCEAGNGE 111 (142)
Q Consensus 51 l~d~~~~l~~-L~~al~~~d~D~~~~~~~aH~LKGss~--------~i----------Ga~~L~~~c~~lE~~~~~~~~~ 111 (142)
+.++.+.+.+ |...|+++| |..++...|.-=|... ++ =+..|...-..|-.+++.+|..
T Consensus 32 i~~ar~Rl~e~L~~lI~~~~--W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~ 109 (133)
T 3ls0_A 32 IAVARDGMEKRLQGLIADQN--WVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDRNGS 109 (133)
T ss_dssp HHHHHHHHHHTHHHHHHTTC--HHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhHHHHHHHhhhcc--hHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3566778899 999999998 9999999997554322 11 0223334444556667776666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045628 112 GCMKTFQLLKRDYATLRRKLEAYFQQA 138 (142)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~L~~~l~~~ 138 (142)
.+.. +|.++...+..|+...
T Consensus 110 ~a~k-------~Y~~a~adfdafl~li 129 (133)
T 3ls0_A 110 QAKI-------QYQEALADFDSFLNLL 129 (133)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHC
T ss_pred HHHH-------HHHHHHHHHHHHHHhc
Confidence 5554 5666666777776654
No 17
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=87.61 E-value=3.2 Score=28.88 Aligned_cols=77 Identities=9% Similarity=0.193 Sum_probs=50.8
Q ss_pred HhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhccccc--------cc-C---------hHHHHHHHHHHHHHHHcCChhhH
Q 045628 52 RDSARLITTIERALEKSPLDFNKLDGYMHQFKGSST--------SI-G---------AKKVKAESTQFREYCEAGNGEGC 113 (142)
Q Consensus 52 ~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~--------~i-G---------a~~L~~~c~~lE~~~~~~~~~~~ 113 (142)
.++.+.+.+|...|+++| |..++...|.-=|... ++ . +..|.+.-..|-.+++.+|...+
T Consensus 31 ~~~r~Rl~eL~~lI~~~~--W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~~a 108 (130)
T 3zsu_A 31 EKNAERFADLEVSVAKGD--WQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLDSVTVA 108 (130)
T ss_dssp HHHHTTHHHHHHHHHTTC--HHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhcc--hHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 456677899999999998 9999999996544321 11 1 23344445566677777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045628 114 MKTFQLLKRDYATLRRKLEAYFQQ 137 (142)
Q Consensus 114 ~~~~~~l~~~~~~~~~~L~~~l~~ 137 (142)
.. +|.++...+..|+..
T Consensus 109 ~k-------~Y~~a~adfdafl~l 125 (130)
T 3zsu_A 109 QE-------GFREAEADFKAYLNS 125 (130)
T ss_dssp HH-------HHHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHHHHHh
Confidence 55 456666666666654
No 18
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=86.72 E-value=6.7 Score=27.82 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=51.5
Q ss_pred HHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhh--------cccccccC----------hHHHHHHHHHHHHHHHcCChhh
Q 045628 51 YRDSARLITTIERALEKSPLDFNKLDGYMHQF--------KGSSTSIG----------AKKVKAESTQFREYCEAGNGEG 112 (142)
Q Consensus 51 l~d~~~~l~~L~~al~~~d~D~~~~~~~aH~L--------KGss~~iG----------a~~L~~~c~~lE~~~~~~~~~~ 112 (142)
++++.+.|..++..+++++ |..++...|.= +.-..+.. +..|..-...|..+++.+|...
T Consensus 52 Ik~~a~~i~~vk~lI~k~~--W~~vrn~LR~~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~ 129 (149)
T 1vyk_A 52 AKVSASEILNVKQFIDRKA--WPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTE 129 (149)
T ss_dssp HHHHHHHHHTTHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhhhcc--HHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3446667778888899887 99999888842 22222222 2445566667788888888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045628 113 CMKTFQLLKRDYATLRRK 130 (142)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~ 130 (142)
+...+......|..+.+.
T Consensus 130 a~~~Y~~t~~~ld~vl~~ 147 (149)
T 1vyk_A 130 AEKYYGQTVSNINEVLAK 147 (149)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777666666655555443
No 19
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=79.52 E-value=25 Score=31.44 Aligned_cols=109 Identities=15% Similarity=0.201 Sum_probs=64.4
Q ss_pred HHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhh--------------hccccccc-
Q 045628 25 DEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQ--------------FKGSSTSI- 89 (142)
Q Consensus 25 D~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~--------------LKGss~~i- 89 (142)
+.....+..|+..-....+.++.+.|.+.+... ..|..|..+|| -+.+...+.. +-+.|.+=
T Consensus 288 ~~l~~k~~dL~r~L~~AvvdqvsD~F~dt~~pL-~~Li~Aa~~g~--ee~~~e~a~~F~eha~~lvevA~Lv~~~s~ne~ 364 (832)
T 4igg_A 288 DKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPL-LVLIEAAKNGN--EKEVKEYAQVFREHANKLIEVANLACSISNNEE 364 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSSHHH-HHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH-HHHHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 333445666655444567888888887765444 45666777776 5555554433 33333322
Q ss_pred ChHHHHHHHHHHHHHHH-----------cCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045628 90 GAKKVKAESTQFREYCE-----------AGNGEGCMKTFQLLKRDYATLRRKLEAYFQ 136 (142)
Q Consensus 90 Ga~~L~~~c~~lE~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~ 136 (142)
|...+...|..+|..+. .-+...+.+.|+.+.+.|......|...+.
T Consensus 365 ~v~~i~~aa~~le~L~PQVI~Aar~L~~~P~Sk~A~Enle~f~~~W~~~v~~L~~avD 422 (832)
T 4igg_A 365 GVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVD 422 (832)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666433 223456778888888888776666655443
No 20
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=76.94 E-value=12 Score=26.78 Aligned_cols=38 Identities=8% Similarity=0.071 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhh
Q 045628 43 VEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQF 82 (142)
Q Consensus 43 l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~L 82 (142)
+..+....-....+.+..|..++..+| |..+.....+|
T Consensus 118 l~~l~~~~~~~~~~~~~~l~~~~~~~d--~~~A~~~~~kL 155 (174)
T 3hho_A 118 LVAFDTKVTAMQRHYLAQLQGQLAQSE--WLAAADQIRKL 155 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHH
Confidence 333333344444444444444444443 44444444333
No 21
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=69.56 E-value=6.7 Score=28.58 Aligned_cols=83 Identities=12% Similarity=0.219 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcccccCChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHH-HHHHHHHHhcCCCCHHHHHHHhhhhccc
Q 045628 7 LRRQLASMRQSLFDQGHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARL-ITTIERALEKSPLDFNKLDGYMHQFKGS 85 (142)
Q Consensus 7 ~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~-l~~L~~al~~~d~D~~~~~~~aH~LKGs 85 (142)
++.++.+.+.++|...=....+.++..+ +|.|- ...|++.+... +..|..|..++| .+.++.++..
T Consensus 21 ~~~~~~~~~~~~f~~s~~~~~l~~i~~~----dp~Fd---~~~Fl~~ak~~iy~~Iq~A~~~gD--~~~Lr~~~t~---- 87 (194)
T 2cw9_A 21 LTDKVTDLLGGLFSKTEMSEVLTEILRV----DPAFD---KDRFLKQCENDIIPNVLEAMISGE--LDILKDWCYE---- 87 (194)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHHHHH----CTTCC---HHHHHHHHHHTHHHHHHHHHHHTC--HHHHHHHBCH----
T ss_pred hhhhhhhhhccccCCCHHHHHHHHHHhh----CCCCC---HHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHhcCH----
Confidence 4445555555555544333345555554 56663 37899999998 699999999998 8888876632
Q ss_pred ccccChHHHHHHHHHHHHHHHcC
Q 045628 86 STSIGAKKVKAESTQFREYCEAG 108 (142)
Q Consensus 86 s~~iGa~~L~~~c~~lE~~~~~~ 108 (142)
.-...++..+......|
T Consensus 88 ------~~~~~~~~~i~~r~~~g 104 (194)
T 2cw9_A 88 ------ATYSQLAHPIQQAKALG 104 (194)
T ss_dssp ------HHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHHHCC
Confidence 33444445555554443
No 22
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=68.92 E-value=5.8 Score=21.78 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCCHHHHHHHhhhhcc
Q 045628 60 TIERALEKSPLDFNKLDGYMHQFKG 84 (142)
Q Consensus 60 ~L~~al~~~d~D~~~~~~~aH~LKG 84 (142)
+|--|...|| |+++.-+=|+||+
T Consensus 16 qiyvA~seGd--~etv~~Le~QL~~ 38 (40)
T 1gp8_A 16 QMDAAASKGD--VETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHTTSC--HHHHHHHHHHHTT
T ss_pred HHHHHHhcCC--HHHHHHHHHHHHh
Confidence 4555677898 9999999999987
No 23
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=67.44 E-value=19 Score=25.58 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 045628 95 KAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEA 133 (142)
Q Consensus 95 ~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~ 133 (142)
..+...|..+...++++.+...+.+++= |..+...|+.
T Consensus 126 ~~~~~~l~~~~~~~~~~~A~~~~~kl~y-~~kl~~~i~~ 163 (171)
T 1fpo_A 126 DTRHQLMVEQLDNETWDAAADTCRKLRF-LDKLRSSAEQ 163 (171)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3444445545555566555555555543 4444444443
No 24
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=65.56 E-value=21 Score=25.67 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 045628 93 KVKAESTQFREYCEAGNGEGCMKTFQLLKRDYATLRRKLEA 133 (142)
Q Consensus 93 ~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~ 133 (142)
.+..+...|+.+...++++.+...+.+++= |..+...|+.
T Consensus 133 ~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y-~~kl~~~ik~ 172 (181)
T 3uo3_A 133 RIQDIEAQLGQCYNDKDYAAAVKLTVELKY-WYNLAKAFKD 172 (181)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 344555555555556666666555555543 4444444443
No 25
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=65.41 E-value=22 Score=26.13 Aligned_cols=39 Identities=10% Similarity=0.321 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhc
Q 045628 43 VEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFK 83 (142)
Q Consensus 43 l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LK 83 (142)
+.++-..+-....+.+..|..++..+| |..+.....+||
T Consensus 153 l~~l~~~~~~~~~~~~~~l~~~~~~~d--~~~A~~~v~kL~ 191 (207)
T 3bvo_A 153 MKEIESIVKAKQKEFTDNVSSAFEQDD--FEEAKEILTKMR 191 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Confidence 333333333333334445555555554 555554444443
No 26
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=55.65 E-value=14 Score=22.20 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=28.4
Q ss_pred HHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHH
Q 045628 27 QFILLEELQDDANPNFVEEVVTLHYRDSARLITTIE 62 (142)
Q Consensus 27 ~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~ 62 (142)
+|.+++.+-. .+|+++..++...-.+.|+.+..|.
T Consensus 12 qf~~lR~~vq-~NP~~L~~lLqql~~~nP~l~~~I~ 46 (61)
T 2f4m_B 12 QFQQMRQIIQ-QNPSLLPALLQQIGRENPQLLQQIS 46 (61)
T ss_dssp HHHHHHHHHH-HCGGGHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHH-HCHHHHHHHHHHHHhHCHHHHHHHH
Confidence 6888888876 5899999999988888887776654
No 27
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=54.24 E-value=22 Score=23.39 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=24.6
Q ss_pred ccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 045628 84 GSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLK 121 (142)
Q Consensus 84 Gss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~ 121 (142)
|+|..-....+..++..|+.++...+.+.+..++..|+
T Consensus 4 ~~~~M~~e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~ 41 (103)
T 1wjt_A 4 GSSGMGLEEELLRIAKKLEKMVSRKKTEGALDLLKKLN 41 (103)
T ss_dssp SCCSSCSHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 33433335577777888888777666667666666664
No 28
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=46.16 E-value=28 Score=21.50 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=33.4
Q ss_pred CChHHHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHH
Q 045628 22 GHLDEQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIE 62 (142)
Q Consensus 22 g~lD~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~ 62 (142)
.-++..+.++..|...-+..|+..++..|=.++++.+..|=
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LL 51 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNIL 51 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34556688888888878899999999999999988887663
No 29
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=43.72 E-value=53 Score=19.96 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=10.1
Q ss_pred CHHHHHHHhhhhccccccc
Q 045628 71 DFNKLDGYMHQFKGSSTSI 89 (142)
Q Consensus 71 D~~~~~~~aH~LKGss~~i 89 (142)
|++.+...+..+++.+..|
T Consensus 7 ~~~~l~~~A~~~~~~~~~l 25 (97)
T 2vs0_A 7 SPEEIRAKSQSYGQGSDQI 25 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443
No 30
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=43.05 E-value=57 Score=20.09 Aligned_cols=14 Identities=7% Similarity=-0.002 Sum_probs=5.8
Q ss_pred ChHHHHHHHHHHHH
Q 045628 39 NPNFVEEVVTLHYR 52 (142)
Q Consensus 39 ~~~~l~ell~~Fl~ 52 (142)
+|+-+...-..|-.
T Consensus 9 ~~e~l~~~A~~~~~ 22 (98)
T 3gwk_C 9 TPEELRSSAQKYTA 22 (98)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 34444444444333
No 31
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=42.81 E-value=51 Score=20.15 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=6.4
Q ss_pred ChHHHHHHHHHHHH
Q 045628 39 NPNFVEEVVTLHYR 52 (142)
Q Consensus 39 ~~~~l~ell~~Fl~ 52 (142)
+|+-+..+...|-.
T Consensus 10 ~~~~l~~~A~~~~~ 23 (99)
T 3zbh_A 10 TPEELRGVARQYNV 23 (99)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 45544444444433
No 32
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=37.04 E-value=76 Score=23.08 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcc
Q 045628 42 FVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKG 84 (142)
Q Consensus 42 ~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKG 84 (142)
++.+.+..|..+ +.+..|..|++.+| -+.+.++...||-
T Consensus 141 ~l~~~~~~~~~~--~L~~~ID~ALd~~D--~e~F~~Lt~~L~~ 179 (188)
T 3do9_A 141 FLEESVFSFRRE--RLLKQIDEALDKQD--KEAFHRLTAELKM 179 (188)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHH
Confidence 334444444443 36899999999998 9999999998874
No 33
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=36.60 E-value=1.3e+02 Score=25.36 Aligned_cols=88 Identities=17% Similarity=0.250 Sum_probs=55.1
Q ss_pred CChHHHHHHHHHHHHh--HHHHHHHHH-HHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHc-CChhhH
Q 045628 38 ANPNFVEEVVTLHYRD--SARLITTIE-RALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEA-GNGEGC 113 (142)
Q Consensus 38 ~~~~~l~ell~~Fl~d--~~~~l~~L~-~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~-~~~~~~ 113 (142)
+++.|+..|+. |-.| +++.+..|+ ..+...+.+++.+.. .|.-|..|...+..+.....- ......
T Consensus 116 ~~~~Fl~~L~~-fdkd~I~~~~~~~l~~~y~~~p~F~~e~v~~---------~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pL 185 (536)
T 3err_A 116 MRENFIPTIVN-FSAEEISDAIREKMKKNYMSNPSYNYEIVNR---------ASLAAGPMVKWAIAQLNYADMLKRVEPL 185 (536)
T ss_dssp GCTTHHHHHHH-CCGGGCCHHHHHHHHHHTTTSTTCSHHHHHH---------HCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHh-cCcccCCHHHHHHHHHHhcCCCCCCHHHHHH---------HHHHHHHHHHHHHhcchhHHHHHhhhhh
Confidence 35678877765 5333 345677886 577777766666653 233455677777777766543 233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045628 114 MKTFQLLKRDYATLRRKLEAYF 135 (142)
Q Consensus 114 ~~~~~~l~~~~~~~~~~L~~~l 135 (142)
...+..++.++..+...|+..+
T Consensus 186 k~eLk~lE~eL~e~e~eL~~ll 207 (536)
T 3err_A 186 RNELQKLEDDAKDNQQKLEALL 207 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6667777777777777776654
No 34
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=33.84 E-value=14 Score=27.72 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHHHhHHHH-HHHHHHHHhcCCCCHHHHHHHhhhhcccccccChHHHHHHHHHHHHHHHcC
Q 045628 38 ANPNFVEEVVTLHYRDSARL-ITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGAKKVKAESTQFREYCEAG 108 (142)
Q Consensus 38 ~~~~~l~ell~~Fl~d~~~~-l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa~~L~~~c~~lE~~~~~~ 108 (142)
-||.|- ...|++.+.+. ++.+-.|..+|| .+.++.+++. ......+..+....+.|
T Consensus 71 ~DPsF~---~~~Fl~~a~~ai~p~Il~Af~~GD--~~~Lk~llse----------~~y~~f~~~i~~r~~~G 127 (222)
T 3qk9_A 71 MDPTFS---NESFTRHLREYIVPEILEAYVKGD--VKVLKKWFSE----------APFNVYAAQQKIFKEQD 127 (222)
T ss_dssp ----CC---HHHHHHHHHHTHHHHHHHHHHHTC--HHHHHHHBCH----------HHHHHHHHHHHHHHTTT
T ss_pred hCCCCC---HHHHHHHHHHHHHHHHHHHHHcCC--HHHHHhhcCH----------HHHHHHHHHHHHHHHCC
Confidence 367664 47888888888 678999999998 8888877653 23334444555554444
No 35
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=33.26 E-value=40 Score=24.30 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=27.1
Q ss_pred HHHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHH
Q 045628 26 EQFILLEELQDDANPNFVEEVVTLHYRDSARLITTIE 62 (142)
Q Consensus 26 ~~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~ 62 (142)
++|.+++.+-. .+|+++..||...-.+.|..+..|.
T Consensus 33 Pqf~qlRq~vq-qNPqlL~~lLqqig~~NPqL~qlI~ 68 (171)
T 2qsf_X 33 EDLLSLRQVVS-GNPEALAPLLENISARYPQLREHIM 68 (171)
T ss_dssp HHHHHHHHHHH-TCGGGHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHH-HCHHHHHHHHHHHHhhCHHHHHHHH
Confidence 37888888766 5899888888877777777666553
No 36
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=31.50 E-value=1.2e+02 Score=20.45 Aligned_cols=82 Identities=7% Similarity=0.119 Sum_probs=46.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHH-------HHhhhhcccc-------cccChHHHHHHHH-HHHHHHHcC
Q 045628 44 EEVVTLHYRDSARLITTIERALEKSPLDFNKLD-------GYMHQFKGSS-------TSIGAKKVKAEST-QFREYCEAG 108 (142)
Q Consensus 44 ~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~-------~~aH~LKGss-------~~iGa~~L~~~c~-~lE~~~~~~ 108 (142)
.+|+-+.++-.-+.+...+.+++++| ++... .....|+++- -.-....|+.-|. +|-.+...+
T Consensus 26 ~~Li~mLydgal~~l~~A~~ai~~~d--~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~~~~L~~An~~~ 103 (131)
T 3iqc_A 26 AKLIEMLYEGILRFSSQAKRCIENED--IEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVEN 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 36788888888888999999999998 66322 2222232221 1112333555554 344555555
Q ss_pred Chh---hHHHHHHHHHHHHHHH
Q 045628 109 NGE---GCMKTFQLLKRDYATL 127 (142)
Q Consensus 109 ~~~---~~~~~~~~l~~~~~~~ 127 (142)
|.+ ++...+..|++.|.++
T Consensus 104 d~~~l~ev~~ll~~lr~aW~~i 125 (131)
T 3iqc_A 104 DASKIDLVLNVARGLLEAWREI 125 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 543 4555566666666554
No 37
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Probab=27.59 E-value=1.5e+02 Score=23.59 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccCh-------------HHHHHHHHHHHHHHHc
Q 045628 43 VEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGA-------------KKVKAESTQFREYCEA 107 (142)
Q Consensus 43 l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa-------------~~L~~~c~~lE~~~~~ 107 (142)
+.+.+..+...+....++|..+..+- ...+..+++..|..++++|- ..++..+..|=.+.+.
T Consensus 65 Lve~~~~Lv~~a~~tqe~La~aa~~~---a~~i~~La~~vK~gAAsl~~~d~~tQv~lLna~kdVa~al~~Li~atK~ 139 (332)
T 3dyj_A 65 LVEDTKVLVQNAAGSQEKLAQAAQSS---VATITRLADVVKLGAASLGAEDPETQVVLINAVKDVAKALGDLISATKA 139 (332)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555556665555554 67788999999999999953 4455566666666664
No 38
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=27.57 E-value=1.8e+02 Score=21.34 Aligned_cols=58 Identities=12% Similarity=0.171 Sum_probs=35.9
Q ss_pred HHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccccCh-------------HHHHHHHHHHHHHHHc
Q 045628 47 VTLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFKGSSTSIGA-------------KKVKAESTQFREYCEA 107 (142)
Q Consensus 47 l~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LKGss~~iGa-------------~~L~~~c~~lE~~~~~ 107 (142)
...+...+....++|..+..+- ...+..+++..|-.++++|. ..++..+.+|-.+.+.
T Consensus 60 tk~LV~~a~~tQe~LA~aa~~~---v~~i~~La~~vK~gAAsl~s~dp~tQv~LLna~kdVa~aL~~Li~atK~ 130 (199)
T 3fyq_A 60 TKVLVTGAAGTQDQLANAAQNA---VSTITQLAEAVKRGACSLGSTQPDSQVMVINAVKDVASALGDLINCTKL 130 (199)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444445555555544 67788899999999999976 3445555555555554
No 39
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=27.03 E-value=28 Score=21.53 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=27.2
Q ss_pred HHHHHHhhcccCChHHHHHHHHHHHHhHHHHHHHHH
Q 045628 27 QFILLEELQDDANPNFVEEVVTLHYRDSARLITTIE 62 (142)
Q Consensus 27 ~~~~L~~L~~~~~~~~l~ell~~Fl~d~~~~l~~L~ 62 (142)
+|.+|+.+-. .+|+++..|+...-.+.|+.+..|.
T Consensus 14 qf~qlR~~vq-qNP~lL~~lLqqL~~~NPqL~q~I~ 48 (72)
T 1pve_A 14 QFQQMRQIIQ-QNPSLLPALLQQIGRENPQLLQQIS 48 (72)
T ss_dssp TTTTHHHHHT-TCGGGHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH-HCHHHHHHHHHHHHhHCHHHHHHHH
Confidence 5777777766 6899999998888888877776554
No 40
>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics, hypothetical cytosolic protein, PSI, protein structure initiative; 1.83A {Bacillus subtilis subsp}
Probab=24.94 E-value=1.2e+02 Score=20.09 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=36.1
Q ss_pred ccccCChHH---H-HHHHHhhcc-------cCChHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 045628 18 LFDQGHLDE---Q-FILLEELQD-------DANPNFVEEVVTLHYRDSARLITTIERALEK 67 (142)
Q Consensus 18 ~~~~g~lD~---~-~~~L~~L~~-------~~~~~~l~ell~~Fl~d~~~~l~~L~~al~~ 67 (142)
+.+.|+|+. . |..+..+++ .-|++.+.+++..++.+-.+.+..+...+++
T Consensus 75 L~~~gvi~~~~~~~~~~m~g~RN~lvH~Y~~id~~~v~~~i~~~l~~l~~~~~~i~~~l~~ 135 (144)
T 1ylm_A 75 LVDEKVVTEKEGDELKKLIAYRKTLVQQYLLADSGELYRLIKAHQTALQDFPKRIRSYLET 135 (144)
T ss_dssp HHHTTSSCHHHHHHHHHHHTTHHHHHTCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCcCHHHHHHHHHHHHHHhHHhcCccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345688866 2 667666665 4578888888888888888888888777643
No 41
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.68 E-value=1.2e+02 Score=18.59 Aligned_cols=41 Identities=10% Similarity=0.204 Sum_probs=28.0
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhh
Q 045628 38 ANPNFVEEVVTLHYRDSARLITTIERALEKSPLDFNKLDGYMH 80 (142)
Q Consensus 38 ~~~~~l~ell~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH 80 (142)
...+-.+.+++....-++.....+-.++...+ +..++...+
T Consensus 50 t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~--~~~La~~L~ 90 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDNDSYVSFYNALLHEG--YKDLAALLH 90 (94)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT--CHHHHHHHG
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcC--HHHHHHHHh
Confidence 34566777777777777777888888887665 655555443
No 42
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=23.55 E-value=63 Score=23.87 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=15.8
Q ss_pred cccChHHHHHHHHHHHH
Q 045628 87 TSIGAKKVKAESTQFRE 103 (142)
Q Consensus 87 ~~iGa~~L~~~c~~lE~ 103 (142)
+.+||..+.++|..|+.
T Consensus 152 A~~Ga~~ileL~~~l~~ 168 (198)
T 3p9y_A 152 ALMGAFVITDMINMMAK 168 (198)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999999999987
No 43
>3t0y_B NEPR; sigma factor, anti-sigma factor, receiver domain, gene regul signal transduction, transcription regulator-protein bindin; 2.10A {Caulobacter vibrioides}
Probab=22.14 E-value=40 Score=20.64 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHhcccccCChHHHHHHHHhhcc
Q 045628 3 RNQQLRRQLASMRQSLFDQGHLDEQFILLEELQD 36 (142)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~g~lD~~~~~L~~L~~ 36 (142)
|.+.|..+|..+.....++++=|+-++-|..|..
T Consensus 30 rQ~~IG~~LR~~Yd~vv~EpVPDrFldLL~qLda 63 (68)
T 3t0y_B 30 RQQAIGVKLRQMFDEVVNEPVPDEFLAILRKAER 63 (68)
T ss_dssp CCCHHHHHHHHHTHHHHHSCCCHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5678888999999888888988886666777754
No 44
>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure, electron transport, heme, iron, metal-binding, periplasm, transport; HET: HEM; 1.72A {Escherichia coli} SCOP: a.24.3.1 PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 3l1m_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 3nmi_A* 3nmj_A* 3nmk_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 3hnk_A* ...
Probab=21.11 E-value=1.7e+02 Score=18.57 Aligned_cols=36 Identities=8% Similarity=0.033 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 045628 91 AKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDYAT 126 (142)
Q Consensus 91 a~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~~~ 126 (142)
+..|......+..++..|+.+.+...+..+...-..
T Consensus 65 F~~l~~~~~~l~~aa~~gd~~~~k~a~~~v~~~Ck~ 100 (106)
T 3de8_A 65 FDILVGQIHDALHLANEGKVKEAQAAAEQLKTTCNA 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 444666677777777888888777777666554433
No 45
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=20.21 E-value=2e+02 Score=19.17 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=47.7
Q ss_pred HHHHHhHHHHHHHHHHHHhcCCCCHHHHHHHhhhhc--------------ccccccChHHHHHHHHHHH-HHHHcCChhh
Q 045628 48 TLHYRDSARLITTIERALEKSPLDFNKLDGYMHQFK--------------GSSTSIGAKKVKAESTQFR-EYCEAGNGEG 112 (142)
Q Consensus 48 ~~Fl~d~~~~l~~L~~al~~~d~D~~~~~~~aH~LK--------------Gss~~iGa~~L~~~c~~lE-~~~~~~~~~~ 112 (142)
..|.+|+.+-+..|+.+++-.+ |-.........+| ++++.-.+..|......|= .....|+..-
T Consensus 14 ~~Y~~dT~~Vv~~lr~~l~l~~-d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf~tm~tAlNaLAGHY~s~g~~Pl 92 (115)
T 2kmf_A 14 GNYSQDTLTVIATLREAIDLPQ-DAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTSYGARPI 92 (115)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCT-TCTTHHHHHHHHHHHHHHHHHHTHHHHCSSSCHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccHHHHHHHHHHHHHHHHcCCC-CCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcCCCCC
Confidence 3477777777888887776443 2333333333332 3444444444444444333 2223355545
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045628 113 CMKTFQLLKRDYATLRRKLEA 133 (142)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~L~~ 133 (142)
-.....+|.++|..+...|..
T Consensus 93 Pek~k~Rl~~el~~AE~al~r 113 (115)
T 2kmf_A 93 PEKLKKRLQLEFTQAERSIER 113 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHc
Confidence 556678888889888877753
No 46
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=20.09 E-value=1.3e+02 Score=23.09 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=31.9
Q ss_pred cccccccChHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 045628 83 KGSSTSIGAKKVKAESTQFREYCEAGNGEGCMKTFQLLKRDY 124 (142)
Q Consensus 83 KGss~~iGa~~L~~~c~~lE~~~~~~~~~~~~~~~~~l~~~~ 124 (142)
-|+.+.+.+.-+...|.++-.++++||.+++..+..++..-+
T Consensus 210 ~G~~G~i~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~ 251 (309)
T 3fkr_A 210 AGATGAMTGGGFPDGIRPILEAWREGRHDDAYARYQAWLPLI 251 (309)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 455556666778899999999999999998877666554433
Done!