BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045630
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U9M|A Chain A, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|C Chain C, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|E Chain E, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|G Chain G, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
Length = 160
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 22 KVISGQYGFIAQLNYPRHLKERPAEFRVEKVYQMGQEEVLFQ 63
K + +Y QLNY + LKER F + + M +EE +FQ
Sbjct: 97 KNVKNEY---EQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQ 135
>pdb|3V5X|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell
pdb|3V5X|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell
pdb|3V5Y|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|C Chain C, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|D Chain D, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Z|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell, Grown
Anaerobically
pdb|3V5Z|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell, Grown
Anaerobically
Length = 161
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 22 KVISGQYGFIAQLNYPRHLKERPAEFRVEKVYQMGQEEVLFQ 63
K + +Y QLNY + LKER F + + M +EE +FQ
Sbjct: 97 KNVKNEY---EQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQ 135
>pdb|2CA3|A Chain A, Sulfite Dehydrogenase From Starkeya Novella R55m Mutant
Length = 373
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 162 FPIQKAPTRKIITS---GGCVKISELFNYPVRGLVFEGGNSLQDLS 204
PI + R IT+ G VK E+ P+RG+ F+GG + +S
Sbjct: 256 IPINRFDVRSFITNVENGASVKAGEV---PLRGIAFDGGYGITQVS 298
>pdb|2BLF|A Chain A, Sulfite Dehydrogenase From Starkeya Novella
pdb|2BPB|A Chain A, Sulfite Dehydrogenase From Starkeya Novella
Length = 373
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 162 FPIQKAPTRKIITS---GGCVKISELFNYPVRGLVFEGGNSLQDLS 204
PI + R IT+ G VK E+ P+RG+ F+GG + +S
Sbjct: 256 IPINRFDVRSFITNVENGASVKAGEV---PLRGIAFDGGYGITQVS 298
>pdb|2CA4|A Chain A, Sulfite Dehydrogenase From Starkeya Novella Mutant
Length = 373
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 162 FPIQKAPTRKIITS---GGCVKISELFNYPVRGLVFEGGNSLQDLS 204
PI + R IT+ G VK E+ P+RG+ F+GG + +S
Sbjct: 256 IPINRFDVRSFITNVENGASVKAGEV---PLRGIAFDGGYGITQVS 298
>pdb|2C9X|A Chain A, Sulfite Dehydrogenase From Starkeya Novella Y236f Mutant
Length = 373
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 162 FPIQKAPTRKIITS---GGCVKISELFNYPVRGLVFEGGNSLQDLS 204
PI + R IT+ G VK E+ P+RG+ F+GG + +S
Sbjct: 256 IPINRFDVRSFITNVENGASVKAGEV---PLRGIAFDGGYGITQVS 298
>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
Length = 624
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 160 LPFPIQKAPTRKIITSGGCVKISELFNYPVRGLVFEGGNSLQDLSN-----TVSDACVCL 214
L P T + +G K EL +YP + L+ +G + + N ++ AC+C
Sbjct: 60 LTLPPLPESTNDYVWAG---KRKELDDYPRKQLIIDGLSIVIPTYNRAKILAITLACLCN 116
Query: 215 QENNIPYNVLIVDCGKR 231
Q+ Y V++ D G +
Sbjct: 117 QKTIYDYEVIVADDGSK 133
>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
Length = 625
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 160 LPFPIQKAPTRKIITSGGCVKISELFNYPVRGLVFEGGNSLQDLSN-----TVSDACVCL 214
L P T + +G K EL +YP + L+ +G + + N ++ AC+C
Sbjct: 61 LTLPPLPESTNDYVWAG---KRKELDDYPRKQLIIDGLSIVIPTYNRAKILAITLACLCN 117
Query: 215 QENNIPYNVLIVDCGKR 231
Q+ Y V++ D G +
Sbjct: 118 QKTIYDYEVIVADDGSK 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,687,915
Number of Sequences: 62578
Number of extensions: 248304
Number of successful extensions: 582
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 8
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)