BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045631
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D
Length = 375
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHTGVMVGMGQKDSYVGDEAQSKRGILTLK 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P + I TN +D+
Sbjct: 69 YPIEHGIV---TNWDDM 82
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin
Complexed With Ca Atp And Human Gelsolin Segment 1
pdb|1NM1|A Chain A, Crystal Structure Of D. Dicsoideum Actin Complexed With
Gelsolin Segment 1 And Mg Atp At 1.8 A Resolution
pdb|1NMD|A Chain A, Crystal Structure Of D. Discoideum Actin-Gelsolin
Segment 1 Complex Crystallized In Presence Of Lithium
Atp
Length = 375
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHTGVMVGMGQKDSYVGDEAQSKRGILTLK 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P + I TN +D+
Sbjct: 69 YPIEHGIV---TNWDDM 82
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin
pdb|2OAN|B Chain B, Structure Of Oxidized Beta-Actin
pdb|2OAN|C Chain C, Structure Of Oxidized Beta-Actin
pdb|2OAN|D Chain D, Structure Of Oxidized Beta-Actin
Length = 375
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P + I ++E I
Sbjct: 69 YPIEHGIVTNWDDMEKI 85
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound
State
pdb|2HF4|A Chain A, Crystal Structure Of Monomeric Actin In Its Atp-Bound
State
pdb|3MN7|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN9|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MMV|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN6|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN6|F Chain F, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
pdb|3MN6|K Chain K, Structures Of Actin-Bound Wh2 Domains Of Spire And The
Implication For Filament Nucleation
Length = 374
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 14 GMCKAGFAGDDAPRAVFPSIVG------RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK 67
Query: 63 FPTVNAIAAYGTNLEDI 79
+P + I ++E I
Sbjct: 68 YPIEHGIVTNWDDMEKI 84
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1
Complex
Length = 375
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHQGIMVGMGQKDSYVGDEAQSKRGILTLR 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P + I ++E I
Sbjct: 69 YPIEHGIVTNWDDMEKI 85
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To
2.4 A
Length = 375
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P + I ++E I
Sbjct: 69 YPIEHGIVTNWDDMEKI 85
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To
Cytochalasin D
pdb|3EKU|A Chain A, Crystal Structure Of Monomeric Actin Bound To
Cytochalasin D
pdb|3EL2|A Chain A, Crystal Structure Of Monomeric Actin Bound To Ca-Atp
Length = 375
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P + I ++E I
Sbjct: 69 YPIEHGIVTNWDDMEKI 85
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex
pdb|3LUE|A Chain A, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|B Chain B, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|C Chain C, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|D Chain D, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|E Chain E, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|F Chain F, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|G Chain G, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|H Chain H, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|I Chain I, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3LUE|J Chain J, Model Of Alpha-Actinin Ch1 Bound To F-Actin
pdb|3J0S|A Chain A, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|B Chain B, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|C Chain C, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|D Chain D, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|E Chain E, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|F Chain F, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|G Chain G, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|H Chain H, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|I Chain I, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|J Chain J, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|K Chain K, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|L Chain L, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3UB5|A Chain A, Profilin:actin With A Wide Open Nucleotide Cleft
Length = 374
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 14 GMCKAGFAGDDAPRAVFPSIVG------RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK 67
Query: 63 FPTVNAIAAYGTNLEDI 79
+P + I ++E I
Sbjct: 68 YPIEHGIVTNWDDMEKI 84
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human
Gelsolin Segment 1
Length = 375
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHQGIMVGMGQKDSYVGDEAQSKRGILTLR 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P + I ++E I
Sbjct: 69 YPIEHGIVTNWDDMEKI 85
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|I Chain I, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 365
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 10 GMCKAGFAGDDAPRAVFPSIVG------RPRHQGIMVGMGQKDSYVGDEAQSKRGILTLR 63
Query: 63 FPTVNAIAAYGTNLEDI 79
+P + I ++E I
Sbjct: 64 YPIEHGIVTNWDDMEKI 80
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5O|C Chain C, Crystal Structure Of A Dictyostelium P109i Ca2+-Actin In
Complex With Human Gelsolin Segment 1
Length = 375
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHTGVMVGMGQKDSYVGDEAQSKRGILTLK 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P I TN +D+
Sbjct: 69 YPIEXGIV---TNWDDM 82
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin
Complexed With Human Gelsolin Segment 1 At 1.75 A
Resolution
Length = 375
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P + I TN +D+
Sbjct: 69 YPIEHGIV---TNWDDM 82
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin
With Gelsolin
Length = 375
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHTGVMVGMGQKDSXVGDEAQSKRGILTLK 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P I ++E I
Sbjct: 69 YPIEXGIVTNWDDMEKI 85
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5N|C Chain C, Crystal Structure Of A Dictyostelium P109a Ca2+-Actin In
Complex With Human Gelsolin Segment 1
Length = 375
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHTGVMVGMGQKDSYVGDEAQSKRGILTLK 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P I TN +D+
Sbjct: 69 YPIEXGIV---TNWDDM 82
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|M Chain M, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 365
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 10 GMCKAGFAGDDAPRAVFPSIVG------RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK 63
Query: 63 FPTVNAIAAYGTNLEDI 79
+P + I TN +D+
Sbjct: 64 YPIEHGIV---TNWDDM 77
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin
Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN
(MUTANT 228: Q228kT229AA230YE360H)
Length = 375
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHTGVMVGMGQKDSYVGDEAQSKRGILTLK 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P I TN +D+
Sbjct: 69 YPIEXGIV---TNWDDM 82
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA
Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN
Complex With Human Gelsolin Segment 1
Length = 375
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHTGVMVGMGQKDSYVGDEAQSKRGILTLK 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P I TN +D+
Sbjct: 69 YPIEXGIV---TNWDDM 82
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
pdb|3B63|G Chain G, Actin Filament Model In The Extended Form Of Acromsomal
Bundle In The Limulus Sperm
Length = 365
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 10 GMCKAGFAGDDAPRAVFPSIVG------RPRHQGIMVGMGQKDSYVGDEAQSKRGILTLR 63
Query: 63 FPTVNAIAAYGTNLEDI 79
+P + I ++E I
Sbjct: 64 YPIEHGIVTNWDDMEKI 80
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin
And The Last Poly-Pro Of Human Vasp
pdb|3CIP|A Chain A, Complex Of Dictyostelium Discoideum Actin With Gelsolin
Length = 375
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHTGVMVGMGQKDSYVGDEAQSKRGILTLK 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P I TN +D+
Sbjct: 69 YPIEXGIV---TNWDDM 82
>pdb|1JY5|A Chain A, Rnase-Related Protein From Calystegia Sepium
pdb|1JY5|B Chain B, Rnase-Related Protein From Calystegia Sepium
Length = 212
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 335 PVKGSQNSHKKLGSAGLALHYANIVTQIDTLVSRSSSVPPNTRDALYQGLPPTIKSALRS 394
PV G+Q + S L L++ +++I +S S +P NT + +G+ I+SALR
Sbjct: 111 PVLGNQYEYF---STTLMLYFKYNISEI---LSESGYLPSNTAEYKVEGIMSAIQSALRV 164
Query: 395 KLQLFQVKEELTIQQIKAEMEKTLQ 419
+ + K + ++Q++ +KTLQ
Sbjct: 165 T-PVVKCKSD-AVEQVQICFDKTLQ 187
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin
pdb|1HLU|A Chain A, Structure Of Bovine Beta-Actin-Profilin Complex With
Actin Bound Atp Phosphates Solvent Accessible
Length = 375
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
G+C D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVG------RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK 68
Query: 63 FPTVNAIAAYGTNLEDI 79
+P I ++E I
Sbjct: 69 YPIEXGIVTNWDDMEKI 85
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I
Complex
Length = 374
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 3 GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
GLC D+AP FPS+ G +PR + V S VG+ ++K
Sbjct: 14 GLCKAGFAGDDAPRAVFPSIVG------RPRHQGVMVGMGQKDSYVGDEAQSKRGILTLK 67
Query: 63 FPTVNAIAAYGTNLEDI 79
+P I ++E I
Sbjct: 68 YPIEXGIITNWDDMEKI 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,440,021
Number of Sequences: 62578
Number of extensions: 641470
Number of successful extensions: 1275
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1264
Number of HSP's gapped (non-prelim): 32
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)