BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045631
         (600 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P27132|ACT2_NAEFO Actin-2 (Fragment) OS=Naegleria fowleri PE=2 SV=1
          Length = 371

 Score = 37.7 bits (86), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 9/77 (11%)

Query: 3  GLCSRSSNVDNAPGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTEPFS 62
          G+C      D+APG  FPS+ G      +P++  + V   +  + VG+ V++K     F 
Sbjct: 11 GMCKAGFAGDDAPGAVFPSIIG------RPKQKSIMVGMGNKDAYVGDEVQSKRGILIFK 64

Query: 63 FPTVNAIAAYGTNLEDI 79
          +P  + I    TN +D+
Sbjct: 65 YPIQHGIV---TNWDDM 78


>sp|Q92236|GGPPS_GIBFU Geranylgeranyl pyrophosphate synthase OS=Gibberella fujikuroi
           GN=GGS PE=3 SV=1
          Length = 418

 Score = 33.9 bits (76), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 28/151 (18%)

Query: 14  APGESFPSVNGHFGLVYQPRELPMKVNNNSTPSPVGENVENKELTE-----PFSFPTVNA 68
           +P +  P VN   GL++Q R+  M +++        E   NK + E      FSFP +++
Sbjct: 289 SPTDCVPLVN-LIGLIFQIRDDYMNLSSK-------EYSHNKGMCEDLTEGKFSFPVIHS 340

Query: 69  IAAYGTNLEDINDGIPRLPRALSNKSRSTKSKQVAVAKVSEVSSLLGRAGTVGLGKAVDV 128
           I    TNL+ IN         L  K+  T+ K+ AVA +    S           K + V
Sbjct: 341 IRTNPTNLQLIN--------ILKQKTSDTQIKRYAVAYMESTGSFEYTR------KVLSV 386

Query: 129 LDTLGSSMT-SLNLGSGFTSGVTTKGNKITI 158
           L      M   L+ G G T G+    +K+ I
Sbjct: 387 LIERARKMAEELDQGRGSTKGIQKILDKMAI 417


>sp|A6VWN0|GATA_MARMS Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Marinomonas sp.
           (strain MWYL1) GN=gatA PE=3 SV=1
          Length = 486

 Score = 33.9 bits (76), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 26/122 (21%)

Query: 125 AVDVLDTLGSSMTSLNLG---SGFTSGVTTKGNKITILAFEVANTIVKGANLMQSLSKEN 181
           A D L  L S +T L +G     F  G+ +K          VA+ I+      + L    
Sbjct: 242 ADDYLANLNSPLTGLKIGLPKEYFGEGLDSK----------VADVIMAAVKEFEKLGAT- 290

Query: 182 IKHLKEVVLPSEGVQNLISRDMDELLRIAAADKREELKVFSGEVVRFGNRCEDPQLHNLD 241
              +KE+ LP+      +   +     IA ++    L  F G  VRFG+RC+DP+   LD
Sbjct: 291 ---VKEISLPN------LQLSIPSYYVIAPSEASSNLSRFDG--VRFGHRCDDPK-DLLD 338

Query: 242 RY 243
            Y
Sbjct: 339 MY 340


>sp|Q6PGZ0|CEP63_DANRE Centrosomal protein of 63 kDa OS=Danio rerio GN=cep63 PE=2 SV=2
          Length = 716

 Score = 32.7 bits (73), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 238 HNLDRYFAKLGSELTPQNQLKEEARTIMDQLMTLVQYTAELYHELHAWTDLNK 290
            +L++  A+L S  T ++ LK E   + D+L ++ +Y AE+    H W  + +
Sbjct: 319 QDLEKVTARLNSSQTCESHLKAEVMRLRDKLESMRKYKAEMSRREHEWKQMEE 371


>sp|Q5DWV1|CAD20_RAT Cadherin-20 OS=Rattus norvegicus GN=Cdh20 PE=2 SV=1
          Length = 801

 Score = 32.7 bits (73), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 76  LEDINDGIPRLPRALSNKSRSTKSKQVAVAKVSEVSSLLGRAGTVGLGKAVD------VL 129
           L D+ND  PR P+         K  Q++V + + VSS +GR     L + ++      ++
Sbjct: 264 LSDVNDNPPRFPQ---------KHYQMSVLESAPVSSTVGRVFAKDLDEGINAEMKYTIV 314

Query: 130 DTLGSSMTSLNLGSGFTSGVTTKGNKITILAFEVANTIVKGAN 172
           D  G+    +N    F  G+ T    ++  + +     V+G+N
Sbjct: 315 DGDGADAFDINTDPNFQVGIITVKKPLSFESKKSYTLKVEGSN 357


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,555,324
Number of Sequences: 539616
Number of extensions: 9070852
Number of successful extensions: 24237
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 24205
Number of HSP's gapped (non-prelim): 95
length of query: 600
length of database: 191,569,459
effective HSP length: 123
effective length of query: 477
effective length of database: 125,196,691
effective search space: 59718821607
effective search space used: 59718821607
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)