Query 045631
Match_columns 600
No_of_seqs 127 out of 143
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 06:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f4m_A Tumor necrosis factor, 68.4 55 0.0019 31.0 11.6 105 256-367 28-157 (161)
2 3hls_A Guanylate cyclase solub 54.4 4.7 0.00016 32.8 1.5 17 378-394 49-65 (66)
3 3ghg_A Fibrinogen alpha chain; 36.8 3.2E+02 0.011 30.4 12.6 71 300-383 135-205 (562)
4 1z23_A CRK-associated substrat 33.7 2E+02 0.0068 27.3 9.2 30 160-189 20-61 (163)
5 3twe_A Alpha4H; unknown functi 23.0 53 0.0018 22.6 2.3 14 274-287 2-15 (27)
6 3onj_A T-snare VTI1; helix, HA 17.5 44 0.0015 28.5 1.3 31 385-418 63-93 (97)
7 3mp7_B Preprotein translocase 16.6 32 0.0011 27.7 0.2 32 212-243 2-33 (61)
8 3ssq_A Carbon dioxide concentr 15.4 75 0.0026 28.9 2.3 41 133-173 2-49 (122)
9 2caz_B Vacuolar protein sortin 14.2 6.9E+02 0.024 23.6 8.5 84 272-390 45-133 (155)
10 2k6o_A Cathelicidin antimicrob 14.2 1.3E+02 0.0046 22.4 2.9 28 300-331 5-32 (37)
No 1
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=68.40 E-value=55 Score=31.03 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh-------------hhhhcHHHHHHHHHHH
Q 045631 256 QLKEEARTIMDQLMTLVQYTAELYH-------ELHAWTDLNKIIDASFRKR-------------IILMLLKEVMEKLVDT 315 (600)
Q Consensus 256 ~~~k~ae~~m~km~rlV~~Ta~LY~-------ELeaLd~lEq~Lr~~QrK~-------------LWsrt~d~vVekLvri 315 (600)
+.+++|++.++.+.+.|-...-||+ ||..+++|-+.+++.+--- .-+..+.+.=..|..+
T Consensus 28 ~nkkeA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr~k~~~~amt~iSF~eVdfTfD~~~L~~~L~ec~~lL~~l 107 (161)
T 3f4m_A 28 HSRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLEL 107 (161)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCccccHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999996 8888888877766522110 2333334433333333
Q ss_pred HH-H----HHHHHHHhhCCCCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHhhh
Q 045631 316 VH-F----LHLEIHEAFGSADGDRPVKGSQNSHKKLGSAGLALHYANIVTQIDTLVS 367 (600)
Q Consensus 316 V~-~----i~~rI~~vFG~~~~~~~~~~~~~~~~TLG~AgLALHYANIIi~IEkLvs 367 (600)
|- + =|.||.+||+-.....-...-..+ -..-|--+|+--+++|+-
T Consensus 108 v~~HLT~KS~~Ri~~vF~~f~~~efL~~lf~~-------~~~~~L~kI~~~Lnklld 157 (161)
T 3f4m_A 108 VEHHLTPKSHGRIRHVFDHFSDPGLLTALYGP-------DFTQHLGKICDGLRKLLD 157 (161)
T ss_dssp HTTTSCHHHHHHHHHHHHHHTCHHHHHHHTSG-------GGHHHHHHHHHHHHHHHH
T ss_pred HHhhCCcchHHHHHHHHHHhCCHHHHHHHhCc-------HHHHHHHHHHHHHHHHHh
Confidence 21 1 178999999744321000000011 345566677777777763
No 2
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=54.37 E-value=4.7 Score=32.79 Aligned_cols=17 Identities=41% Similarity=0.790 Sum_probs=13.4
Q ss_pred HHhhccCchHHHHHHHh
Q 045631 378 DALYQGLPPTIKSALRS 394 (600)
Q Consensus 378 D~LYqmLP~sIRsaLRs 394 (600)
+=||+|||++|-..|+.
T Consensus 49 ~LL~~mLP~~VA~~Lk~ 65 (66)
T 3hls_A 49 TLLYSVLPPSVANELRH 65 (66)
T ss_dssp HHHHHTSCHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHhC
Confidence 56888999888887763
No 3
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=36.78 E-value=3.2e+02 Score=30.43 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=39.8
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcchhhhhhhhHHHHHHHHHhhhcCCCCCCchHHH
Q 045631 300 IILMLLKEVMEKLVDTVHFLHLEIHEAFGSADGDRPVKGSQNSHKKLGSAGLALHYANIVTQIDTLVSRSSSVPPNTRDA 379 (600)
Q Consensus 300 LWsrt~d~vVekLvriV~~i~~rI~~vFG~~~~~~~~~~~~~~~~TLG~AgLALHYANIIi~IEkLvs~p~~v~~~aRD~ 379 (600)
+=-.++++.+.++-+-=--|-..|..-.|++.-.. .-.--| =-|-|+=-|+|.+. ...+.|...|..
T Consensus 135 vLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~------~~~vd~------~sY~~~QKQLeQv~-a~dL~p~~~~q~ 201 (562)
T 3ghg_A 135 LLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL------AREVDL------KDYEDQQKQLEQVI-AKDLLPSRDRQH 201 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCC------CCCCCH------HHHHHHHHHHHHHH-TTCCCCSCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchh------eeecch------HHHHHHHHHHHHHh-hcccCCcccccc
Confidence 44555666655555544445566666666553211 111111 14999999999976 666788888888
Q ss_pred hhcc
Q 045631 380 LYQG 383 (600)
Q Consensus 380 LYqm 383 (600)
||.|
T Consensus 202 Lp~l 205 (562)
T 3ghg_A 202 LPLI 205 (562)
T ss_dssp ----
T ss_pred chhc
Confidence 8876
No 4
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=33.73 E-value=2e+02 Score=27.31 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHh---------hhhC---CHHHHHHhhhhc
Q 045631 160 AFEVANTIVKGANL---------MQSL---SKENIKHLKEVV 189 (600)
Q Consensus 160 AFEVAntmsK~~~L---------~~SL---Sd~~I~~Lr~ev 189 (600)
==||+..++++..+ ||+. -+.+|..||.-+
T Consensus 20 Q~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~ 61 (163)
T 1z23_A 20 QQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAV 61 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHH
Confidence 34677777777776 7777 345555555443
No 5
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.99 E-value=53 Score=22.62 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q 045631 274 YTAELYHELHAWTD 287 (600)
Q Consensus 274 ~Ta~LY~ELeaLd~ 287 (600)
+.-+||.|||.|.+
T Consensus 2 nadelykeledlqe 15 (27)
T 3twe_A 2 NADELYKELEDLQE 15 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 35689999988754
No 6
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=17.53 E-value=44 Score=28.51 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=22.7
Q ss_pred chHHHHHHHhccccccccchhhHHHHHHHHHHHh
Q 045631 385 PPTIKSALRSKLQLFQVKEELTIQQIKAEMEKTL 418 (600)
Q Consensus 385 P~sIRsaLRskLr~~~~~de~la~ewk~amekiL 418 (600)
|++.|+.+.+|||.|.. -+..+++..+.+++
T Consensus 63 p~~~R~~~~~klr~Yk~---dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 63 DASERATYKAKLREWKK---TIQSDIKRPLQSLV 93 (97)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 99999999999999876 23333566665543
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=16.61 E-value=32 Score=27.75 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCcccCchhHH
Q 045631 212 ADKREELKVFSGEVVRFGNRCEDPQLHNLDRY 243 (600)
Q Consensus 212 AEk~eeL~~~A~~VaRlG~rC~DP~~hnfdr~ 243 (600)
++..|.++.|.++..|+=++|+-|.|..|-.+
T Consensus 2 ~~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~i 33 (61)
T 3mp7_B 2 AELQERIRHFWKESRRAFLVTKKPNWATYKRA 33 (61)
T ss_dssp ------CTTHHHHHTHHHHHSCCCCTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 46678889999999999999999999877653
No 8
>3ssq_A Carbon dioxide concentrating mechanism protein; bacterial microcompartment fold, shell forming, pore forming structural protein; 2.20A {Thermosynechococcus elongatus}
Probab=15.36 E-value=75 Score=28.88 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=18.8
Q ss_pred ccccccCCCCCCcccccccCCCeeeee-------hhhHHHHHHHHHHh
Q 045631 133 GSSMTSLNLGSGFTSGVTTKGNKITIL-------AFEVANTIVKGANL 173 (600)
Q Consensus 133 gssm~~l~~~~gf~sg~~~kg~kIgIL-------AFEVAntmsK~~~L 173 (600)
|||--.-.+++|.+.....-+..|||+ ++|+|.+|.|.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~M~~AiGiIE~~g~~~aI~AADam~KAA~V 49 (122)
T 3ssq_A 2 GSSHHHHHHSSGLVPRGSHMPIAVGMIETRGFPAVVEAADAMVKAARV 49 (122)
T ss_dssp -------------------CCCEEEEEEEESHHHHHHHHHHHHHHSSE
T ss_pred CccccccccccCCCCccchhhcCEEEEEecCHHHHHHHHHHHhhhCCc
Confidence 444444456777766655556679998 88999999999874
No 9
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2
Probab=14.22 E-value=6.9e+02 Score=23.57 Aligned_cols=84 Identities=18% Similarity=0.252 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHH-----HHHHhhCCCCCCCCCCCCCCCCCCc
Q 045631 272 VQYTAELYHELHAWTDLNKIIDASFRKRIILMLLKEVMEKLVDTVHFLHL-----EIHEAFGSADGDRPVKGSQNSHKKL 346 (600)
Q Consensus 272 V~~Ta~LY~ELeaLd~lEq~Lr~~QrK~LWsrt~d~vVekLvriV~~i~~-----rI~~vFG~~~~~~~~~~~~~~~~TL 346 (600)
...-|+||.=+-+|+.||.+... --.=.+-|.....+|-----++.. .+...|+
T Consensus 45 yE~LAeLYSII~tLE~LEKAYik---D~It~~eYT~aC~rLL~QYKt~~~~~~~~~v~~~~~------------------ 103 (155)
T 2caz_B 45 IETLSEIYSIVITLDHVEKAYLK---DSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQ------------------ 103 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT---TSSCHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHTC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHCC------------------
Confidence 56779999999999999998321 000011255555544322212222 1222231
Q ss_pred chhhhhhhhHHHHHHHHHhhhcCCCCCCchHHHhhccCchHHHH
Q 045631 347 GSAGLALHYANIVTQIDTLVSRSSSVPPNTRDALYQGLPPTIKS 390 (600)
Q Consensus 347 G~AgLALHYANIIi~IEkLvs~p~~v~~~aRD~LYqmLP~sIRs 390 (600)
-||.....-..-+|.|++.|=.++|.+|.-
T Consensus 104 --------------dle~F~~~Y~l~CP~A~~RL~~GvPaTve~ 133 (155)
T 2caz_B 104 --------------SIEAFCDTYNITASNAITRLERGIPITAEH 133 (155)
T ss_dssp --------------SHHHHHHHTTCCCTTHHHHHHSCCSCC---
T ss_pred --------------CHHHHHHHhCCcChHHHHHHhcCCCchhcc
Confidence 188888888888999999998999999873
No 10
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=14.15 E-value=1.3e+02 Score=22.39 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=22.4
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 045631 300 IILMLLKEVMEKLVDTVHFLHLEIHEAFGSAD 331 (600)
Q Consensus 300 LWsrt~d~vVekLvriV~~i~~rI~~vFG~~~ 331 (600)
+|.+.=|++.+++-+|+ ++|++.||.-.
T Consensus 5 ~lrk~geKig~~~kkIg----QkIKdFf~~l~ 32 (37)
T 2k6o_A 5 FFRKSKEKIGKEFKRIV----QRIKDFLRNLV 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHhhC
Confidence 67777788888888887 89999998543
Done!