Query 045631
Match_columns 600
No_of_seqs 127 out of 143
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 06:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045631.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045631hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jfia_ a.22.1.3 (A:) Negative 23.2 66 0.0048 23.5 5.3 50 183-233 6-55 (66)
2 d1vcsa1 a.47.2.1 (A:8-96) Vesi 19.9 29 0.0021 27.4 2.8 20 382-401 55-74 (89)
3 d2pjqa1 a.211.1.1 (A:1-215) Un 16.2 59 0.0043 28.7 4.3 68 207-274 117-207 (215)
4 d1htaa_ a.22.1.2 (A:) Archaeal 13.6 1.5E+02 0.011 21.2 5.4 52 177-233 4-55 (68)
5 d1ku5a_ a.22.1.2 (A:) Archaeal 12.1 89 0.0065 22.6 3.6 42 191-233 13-54 (66)
6 d1ugoa_ a.7.7.1 (A:) BAG-famil 11.3 1.7E+02 0.013 23.3 5.4 36 210-245 19-54 (99)
7 d2qgsa1 a.211.1.1 (A:1-216) Un 9.8 1.5E+02 0.011 25.9 5.0 96 176-273 84-206 (216)
8 d2p3ra2 c.55.1.4 (A:254-500) G 9.7 56 0.004 29.5 1.9 56 342-420 184-243 (247)
9 d2o3fa1 a.4.1.20 (A:1-83) Puta 9.1 65 0.0048 24.7 1.9 65 166-241 5-69 (83)
10 d1j1ja_ a.118.16.1 (A:) Transl 9.0 5.3E+02 0.039 22.1 9.3 23 211-233 17-39 (217)
No 1
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.22 E-value=66 Score=23.49 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=37.0
Q ss_pred HHhhhhccCccccccccccChHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 045631 183 KHLKEVVLPSEGVQNLISRDMDELLRIAAADKREELKVFSGEVVRFGNRCE 233 (600)
Q Consensus 183 ~~Lr~evL~SeGVq~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 233 (600)
.|.|. ||++..=-..||.|--+++.-|+-....+|-.-|..+++-.+|+.
T Consensus 6 srVkk-imk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krkt 55 (66)
T d1jfia_ 6 ARIKK-IMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKT 55 (66)
T ss_dssp HHHHH-HHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---C
T ss_pred HHHHH-HHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 44444 344333334899999999999999999999999999998877664
No 2
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.86 E-value=29 Score=27.44 Aligned_cols=20 Identities=10% Similarity=0.501 Sum_probs=17.6
Q ss_pred ccCchHHHHHHHhccccccc
Q 045631 382 QGLPPTIKSALRSKLQLFQV 401 (600)
Q Consensus 382 qmLP~sIRsaLRskLr~~~~ 401 (600)
+.+|++.|+.+.+|||.|..
T Consensus 55 r~~p~s~R~~~~~klr~Yk~ 74 (89)
T d1vcsa1 55 REIPPQSRGMYSNRMRSYKQ 74 (89)
T ss_dssp TTSCTTTHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHH
Confidence 45899999999999998864
No 3
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}
Probab=16.20 E-value=59 Score=28.71 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhh---hccCCCcccC----------------chhHHHHHhhc--CCCccchhHHHHHH
Q 045631 207 LRIAAADKREELKV--FSGEVVRF---GNRCEDPQLH----------------NLDRYFAKLGS--ELTPQNQLKEEART 263 (600)
Q Consensus 207 L~LA~AEk~eeL~~--~A~~VaRl---G~rC~DP~~h----------------nfdr~F~~l~~--~~~~~~~~~k~ae~ 263 (600)
--+--||+++.|-. +|+...-- |+.=.||.+. .++|+|++|.. +..--..-++.|+.
T Consensus 117 ~Iv~DADrLDalGaiGIaR~f~y~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~i~Hf~eKLl~l~~~m~T~~gk~lA~~ 196 (215)
T d2pjqa1 117 QVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHMTREQYRHQPGTAINHFYEKLFKLAALMNTDTAKALAAH 196 (215)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHTCCSCCTTSCCCSSCCHHHHHHSCCCTTHHHHHTGGGHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHhCCcccCcccccccccchhhhhcCCccHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34567899988876 45555533 3333455432 58899998864 22222233577888
Q ss_pred HHHHHHHHHHH
Q 045631 264 IMDQLMTLVQY 274 (600)
Q Consensus 264 ~m~km~rlV~~ 274 (600)
+.+-|+.|++.
T Consensus 197 R~~~m~~Fl~~ 207 (215)
T d2pjqa1 197 RTAVMHEFVDQ 207 (215)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887753
No 4
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=13.59 E-value=1.5e+02 Score=21.25 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=43.1
Q ss_pred CCHHHHHHhhhhccCccccccccccChHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 045631 177 LSKENIKHLKEVVLPSEGVQNLISRDMDELLRIAAADKREELKVFSGEVVRFGNRCE 233 (600)
Q Consensus 177 LSd~~I~~Lr~evL~SeGVq~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 233 (600)
|.-..|.++=+ +-|+.+ ||+|--+++.=++-+...+|-.-|..+++-++|..
T Consensus 4 LP~a~I~ri~k----~~~~~r-is~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkT 55 (68)
T d1htaa_ 4 LPIAPIGRIIK----NAGAER-VSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKT 55 (68)
T ss_dssp SCHHHHHHHHH----HTTCSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHHHHH----HCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 55566666543 457776 89999999999999999999999999999888876
No 5
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=12.14 E-value=89 Score=22.61 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=35.7
Q ss_pred CccccccccccChHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 045631 191 PSEGVQNLISRDMDELLRIAAADKREELKVFSGEVVRFGNRCE 233 (600)
Q Consensus 191 ~SeGVq~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 233 (600)
+..|+. -||.|--+++.-||-+..+.|-.-|..++.-++|..
T Consensus 13 k~~~~~-ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKT 54 (66)
T d1ku5a_ 13 RKAGAE-RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKT 54 (66)
T ss_dssp HHTTCS-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSE
T ss_pred HhCccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344665 489999999999999999999999999998887764
No 6
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.27 E-value=1.7e+02 Score=23.31 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCcccCchhHHHH
Q 045631 210 AAADKREELKVFSGEVVRFGNRCEDPQLHNLDRYFA 245 (600)
Q Consensus 210 A~AEk~eeL~~~A~~VaRlG~rC~DP~~hnfdr~F~ 245 (600)
+..+..++++.+...|..|...|.|.....|+....
T Consensus 19 ~I~~i~~ev~~L~~~V~~f~~~~~dke~~~L~E~L~ 54 (99)
T d1ugoa_ 19 RLQEIQREVKAIEPQVVGFSGLSDDKNYKRLERILT 54 (99)
T ss_dssp HHHHHHHHHHHSHHHHHTCCCCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 345677888889999999999999876655555433
No 7
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=9.78 E-value=1.5e+02 Score=25.94 Aligned_cols=96 Identities=15% Similarity=0.199 Sum_probs=49.3
Q ss_pred hCCHHHHHHhhhhcc-C--ccccccccccChHHHHHHHHHHHHHHHHH--HHHHHhhhhccCCCcccC------------
Q 045631 176 SLSKENIKHLKEVVL-P--SEGVQNLISRDMDELLRIAAADKREELKV--FSGEVVRFGNRCEDPQLH------------ 238 (600)
Q Consensus 176 SLSd~~I~~Lr~evL-~--SeGVq~LVS~D~~~LL~LA~AEk~eeL~~--~A~~VaRlG~rC~DP~~h------------ 238 (600)
.++++.+..+..-|- + |.|...-.. ..-+.--+-=||+++.|-. +++... +|..+..|-|.
T Consensus 84 g~~~~~i~~I~~~I~~hS~s~~~~~~~p-~tle~~iv~DADrLDalGaiGIaR~f~-y~g~~~~~~~~~~~~~~~~~~~~ 161 (216)
T d2qgsa1 84 DLSSEISQQVLYIIKHMSYRAGKNNHVK-LSIDGEIVRDADRLDAIGAIGIARTFQ-FSGHFGEPMWTETKLSNEELHTS 161 (216)
T ss_dssp TCCHHHHHHHHHHHHTTC-------CCC-CCHHHHHHHHHHHHTTSHHHHHHHHHH-HHHHHTCCSCCCCCCCHHHHTSG
T ss_pred CCCHHHHHHHHHHHHHhhcccCCCCCCC-cCHHHHHHHhchHHHhccchhHHHHHH-HHHhcCCcccCccccccccchhh
Confidence 367877777766542 1 111111111 1112223346788777665 344443 33333333322
Q ss_pred --------chhHHHHHhhc--CCCccchhHHHHHHHHHHHHHHHH
Q 045631 239 --------NLDRYFAKLGS--ELTPQNQLKEEARTIMDQLMTLVQ 273 (600)
Q Consensus 239 --------nfdr~F~~l~~--~~~~~~~~~k~ae~~m~km~rlV~ 273 (600)
.++++|++|.. +..--..-++.|+.+.+-|+.|+.
T Consensus 162 ~~~~~~~~~i~hf~eKLl~l~~~m~T~~gk~~A~~R~~~m~~fl~ 206 (216)
T d2qgsa1 162 LVEELDNSAIKHFYEKLFKLKDLMHTPTAKKLAEERHQFMIQYLK 206 (216)
T ss_dssp GGGGSCCCHHHHHHHTGGGSGGGCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHhhHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 36899999865 322222346778888888887765
No 8
>d2p3ra2 c.55.1.4 (A:254-500) Glycerol kinase {Escherichia coli [TaxId: 562]}
Probab=9.75 E-value=56 Score=29.46 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=32.6
Q ss_pred CCCCcchhhhhhhhHHHHHHHHHhhhcCC---CCCCc-hHHHhhccCchHHHHHHHhccccccccchhhHHHHHHHHHHH
Q 045631 342 SHKKLGSAGLALHYANIVTQIDTLVSRSS---SVPPN-TRDALYQGLPPTIKSALRSKLQLFQVKEELTIQQIKAEMEKT 417 (600)
Q Consensus 342 ~~~TLG~AgLALHYANIIi~IEkLvs~p~---~v~~~-aRD~LYqmLP~sIRsaLRskLr~~~~~de~la~ewk~ameki 417 (600)
....+|+|.||.--..++--+|.+...+. .+-|+ .+++.| ..-..|+++++|.
T Consensus 184 e~~a~GaA~~aa~~~G~~~~~~e~~~~~~~~~~~~P~~~~~~~~-----------------------~~y~~W~~av~rs 240 (247)
T d2p3ra2 184 EVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERN-----------------------YRYAGWKKAVKRA 240 (247)
T ss_dssp CHHHHHHHHHHHHHHTSSSCGGGGTTCCCEEEEECCCSCHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCCCCHHHHHhcCcCCcEECCCCCHHHHH-----------------------HHHHHHHHHHHHH
Confidence 35679999998876666555554432211 11121 112111 2346799999999
Q ss_pred hhh
Q 045631 418 LQW 420 (600)
Q Consensus 418 L~W 420 (600)
|.|
T Consensus 241 ~~w 243 (247)
T d2p3ra2 241 MAW 243 (247)
T ss_dssp SSC
T ss_pred hCc
Confidence 999
No 9
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=9.08 E-value=65 Score=24.69 Aligned_cols=65 Identities=9% Similarity=0.093 Sum_probs=50.5
Q ss_pred HHHHHHHhhhhCCHHHHHHhhhhccCccccccccccChHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcccCchh
Q 045631 166 TIVKGANLMQSLSKENIKHLKEVVLPSEGVQNLISRDMDELLRIAAADKREELKVFSGEVVRFGNRCEDPQLHNLD 241 (600)
Q Consensus 166 tmsK~~~L~~SLSd~~I~~Lr~evL~SeGVq~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~DP~~hnfd 241 (600)
.|..+-..+.+||..+-+ |-+-|-++.+.+..+-..|..++..+--..|.||.+++.=..|..|-
T Consensus 5 ~l~~i~~~~~~Ls~~e~~-----------ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e~k 69 (83)
T d2o3fa1 5 GLAIIQSMKHKLPPSERK-----------LADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDLK 69 (83)
T ss_dssp HHHHHHHHGGGSCHHHHH-----------HHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHhhCCHHHHH-----------HHHHHHcCHHHHHHccHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHH
Confidence 356667777888876653 44566788889999999999999999999999999999855444444
No 10
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.03 E-value=5.3e+02 Score=22.05 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhhhccCC
Q 045631 211 AADKREELKVFSGEVVRFGNRCE 233 (600)
Q Consensus 211 ~AEk~eeL~~~A~~VaRlG~rC~ 233 (600)
--|+||++...++++.+.+++|-
T Consensus 17 ~~d~RE~lik~sRdI~~~sk~~I 39 (217)
T d1j1ja_ 17 EQDIREEIRKVVQSLEQTAREIL 39 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999988876
Done!