Query 045632
Match_columns 532
No_of_seqs 209 out of 1608
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:55:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00934 2a38euk potassium up 100.0 1.2E-65 2.7E-70 560.2 31.1 335 182-532 444-800 (800)
2 PRK10750 potassium transporter 100.0 6.8E-56 1.5E-60 475.5 30.2 389 38-530 64-482 (483)
3 TIGR00933 2a38 potassium uptak 100.0 1E-51 2.2E-56 436.4 27.2 358 70-517 13-390 (390)
4 COG0168 TrkG Trk-type K+ trans 100.0 3.3E-48 7.1E-53 417.3 29.4 386 43-530 69-487 (499)
5 KOG1341 Na+/K+ transporter [In 100.0 2.9E-44 6.4E-49 374.1 21.9 335 182-529 456-818 (854)
6 PF02386 TrkH: Cation transpor 100.0 8.1E-41 1.8E-45 349.4 11.9 307 183-525 7-347 (354)
7 PRK05482 potassium-transportin 99.9 3.4E-23 7.4E-28 221.4 26.4 349 70-523 97-498 (559)
8 TIGR00933 2a38 potassium uptak 99.9 1.3E-23 2.7E-28 222.5 19.5 255 228-526 14-280 (390)
9 TIGR00934 2a38euk potassium up 99.8 4.3E-20 9.4E-25 203.4 16.3 302 42-393 453-784 (800)
10 PRK10750 potassium transporter 99.8 5.2E-19 1.1E-23 190.7 19.0 248 228-526 96-353 (483)
11 COG0168 TrkG Trk-type K+ trans 99.7 1.3E-16 2.9E-21 172.6 20.0 247 71-393 197-470 (499)
12 PF02386 TrkH: Cation transpor 99.7 7.1E-17 1.5E-21 169.0 12.6 252 70-393 51-338 (354)
13 PRK05482 potassium-transportin 99.1 1.7E-09 3.6E-14 116.9 15.6 221 98-393 249-491 (559)
14 KOG1341 Na+/K+ transporter [In 98.5 4E-07 8.6E-12 97.4 10.2 195 42-275 465-673 (854)
15 PF03814 KdpA: Potassium-trans 97.1 0.62 1.3E-05 51.0 33.6 347 70-519 92-490 (552)
16 TIGR00680 kdpA K+-transporting 97.0 0.69 1.5E-05 50.5 28.9 180 317-519 283-499 (563)
17 COG2060 KdpA K+-transporting A 96.9 0.64 1.4E-05 50.1 25.2 142 355-519 333-497 (560)
18 TIGR00680 kdpA K+-transporting 85.5 26 0.00056 38.7 15.1 38 74-111 335-372 (563)
19 PF03814 KdpA: Potassium-trans 76.4 1E+02 0.0023 34.2 15.8 39 74-112 327-365 (552)
20 PF07885 Ion_trans_2: Ion chan 69.9 18 0.00038 29.0 6.4 40 456-516 23-62 (79)
21 PF07885 Ion_trans_2: Ion chan 60.5 29 0.00064 27.6 6.0 59 51-114 6-64 (79)
22 PLN03192 Voltage-dependent pot 39.6 79 0.0017 37.2 7.5 46 347-394 243-289 (823)
23 COG2060 KdpA K+-transporting A 32.5 7.3E+02 0.016 27.5 13.7 38 75-112 335-372 (560)
24 PRK10537 voltage-gated potassi 32.2 2.6E+02 0.0057 29.9 9.4 43 70-115 166-208 (393)
25 PF01007 IRK: Inward rectifier 30.5 49 0.0011 34.6 3.4 57 71-127 83-139 (336)
26 PF12616 DUF3775: Protein of u 29.2 43 0.00092 27.1 2.1 24 498-522 10-33 (75)
27 PF01007 IRK: Inward rectifier 22.0 5.5E+02 0.012 26.9 9.4 50 228-281 83-132 (336)
28 PRK10537 voltage-gated potassi 20.1 3.9E+02 0.0085 28.6 7.9 40 456-516 167-206 (393)
No 1
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=100.00 E-value=1.2e-65 Score=560.16 Aligned_cols=335 Identities=33% Similarity=0.586 Sum_probs=290.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCchhHHHHHHHHhhcccCccccccCCCccccccChh
Q 045632 182 KHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSG 261 (532)
Q Consensus 182 ~~~~~~~~~~iil~~~~~i~~ig~~lL~l~~~~~~~~~~~~~~~~~~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~ 261 (532)
||++++.+.++++.||+++.++|++++..|....+.++..+++++.+++|.|+|||+|||||+||++.++|+.+|+.+++
T Consensus 444 EYRaLk~L~~Iv~~Y~~~~~llG~i~l~~wi~~~~~~~~~l~~~gin~~W~aiFhAVSAFnNAGFsL~~dSM~~F~~~~~ 523 (800)
T TIGR00934 444 EYRALKCLCSIVLVYFLGFNILGFVLLLPWINHVKTYSEVVRSKGVSPTWWGFFTAMSAFANLGLTLTPESMVSFNKNSY 523 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHhhcCccHHHHHHHHHHHHHhcCCCCcCCCcchhhccCcc
Confidence 48999999999999999999999999998887555566677777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhhh-----hhhhhHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 045632 262 LLLLLIPQVLLGNTLYPACLRFAIWVLKKIT-----KREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIF 336 (532)
Q Consensus 262 ~~~vi~~lm~lGgigf~v~~~~~~~~~~r~~-----~~~~~~~~l~~~r~~~~~~l~~s~~~r~i~~~~~~l~~ig~l~l 336 (532)
+++++++++++||+|||+++++++|...|.. .++..+.++++|||| +.++||+.++|+++.+++++++++++++
T Consensus 524 vllvm~~LIi~GntGFPVllrliiw~~~k~~~~~s~~~e~l~fll~~pRr~-~s~Lfps~~T~ill~tt~iL~~ig~ilf 602 (800)
T TIGR00934 524 LLLLMIWFIIIGNTGFPIFLRLIIWILFKISPDLSKRKESLGFLLDHPRRC-FTLLFPSGATWWLFFTLVGLNAIDLILF 602 (800)
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHhhccccccchhhhhhhhccCccce-ecccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888766643 234455677889987 6778999999999999999999999999
Q ss_pred HHHhcCccccCCCCHHHHHHHHHHHhhccCCccccCccCCCCchhHHHHHHHHhhcCCcceEEeccc-------------
Q 045632 337 CSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLPARN------------- 403 (532)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~alFqsvSa~TaGFs~~~~~~~~~~~~~iliilMfIGgstt~~~~r~------------- 403 (532)
+++||++++++++++++++.+++||++++|||||+++|++.+++++++++++|||||++|+.+-+|.
T Consensus 603 ~lLE~nn~tl~~lp~g~Ril~aLFQSVstRTAGFntVdls~Lspatlvl~iiLMyIGa~PtaggIK~TTvyee~sLgi~~ 682 (800)
T TIGR00934 603 IILDWGSSVVDGLSKGIKVLNGLFQSVSTRTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLAISIRRTNVYEEQSLGLYN 682 (800)
T ss_pred HHHhcCccccccCCHHHHHHHHHHHhcccccccccccchHhcChhHHHHHHHHHHhccCCccceeeceeeeheeheeeee
Confidence 9999988788999999999999999999999999999999999999999999999999775333322
Q ss_pred ---cccCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-CCCCccHHHHHHHHhcccCccccCCCcc
Q 045632 404 ---CDEGDSKNCREKEKETKSLLECLAFSQLSYLAIFIILICITERHKMKQ-DPLNFNVLSITIEVISAYGNVGFSTGYS 479 (532)
Q Consensus 404 ---~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~i~~~~i~~~e~~~~~~-~~~~~~~~~~lFevvSA~~tvGls~G~~ 479 (532)
+++. ...+++++....+.+++.+. ++++++++++++++|..+..+ ++.++++++++|||+|||||||+|+|+
T Consensus 683 ~~g~~~~--~~~~~rsi~~~~irrqLs~d-lw~I~l~~flI~I~E~~~l~~~~~~~fs~f~ILFEVVSAyGTVGLSlG~- 758 (800)
T TIGR00934 683 EENEEHE--GESSTKSFIGAHLRRQLSFD-LWYIFLGLFIICICEGRKIQDPDPPNFNVFNILFEVVSAYGTVGLSLGY- 758 (800)
T ss_pred ccCCccc--cccccccccHHHHHHHHHHH-HHHHHHHHHHHHHhcCccccccccccccHHHHHhhhhhhccceeecCCC-
Confidence 1111 01245666666677766544 667778888999999766543 556689999999999999999999998
Q ss_pred CccccCccccccCccccccccCChHHHHHHHHHHHhcCCCCCccCCCcceecC
Q 045632 480 CERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFNMKGGKAWKLS 532 (532)
Q Consensus 480 ~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iGRl~~~~~~gg~~~~~~ 532 (532)
|+.||||+|+|++.+|+|+|++|++|||+++|.+.+|||+|.
T Consensus 759 -----------p~~~~SfSg~ls~~sKLVII~vM~~GRhggLP~alDrAi~LP 800 (800)
T TIGR00934 759 -----------SCSNYSFSGQFTTLSKLVIIAMLIRGRHRGLPYALDRAIILP 800 (800)
T ss_pred -----------CCcccccCCCCCcchHHHHhHHHHccCCCCCcccccceecCC
Confidence 468999999999999999999999999999999999999983
No 2
>PRK10750 potassium transporter; Provisional
Probab=100.00 E-value=6.8e-56 Score=475.53 Aligned_cols=389 Identities=14% Similarity=0.169 Sum_probs=300.1
Q ss_pred CChH---HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccceeeecccccccCcceee-CCccChHHHHHHHHHHHHhh
Q 045632 38 MNPL---MLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVE-MEVFSNSQLIIMTILMLAGG 113 (532)
Q Consensus 38 ~~~~---~l~~~~~~~i~liGalll~l~~~~~~~~~~s~~dAlF~avSa~t~TGls~v~-~~~~~~~~q~ii~~Li~iGG 113 (532)
+++. .++.+.|+++.++|++|+++. .....++.||+||++||+||||+|+++ +|+++...++||.+++|+||
T Consensus 64 l~~~e~~~~v~~~W~~~~l~galPf~~~----g~~~~s~~dA~FEs~Sg~TTTGaTvl~~~~~~p~sil~WRs~~qWiGG 139 (483)
T PRK10750 64 LKSREGFLIVVLFWTVLGSVGALPFIFS----ESPNLTITDAFFESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGG 139 (483)
T ss_pred ccHHhHHHHHHHHHHHHHHHHHHHHHHc----CCCCCCHHHHHHHHHHhccccchhccCChhhcCHHHHHHHHHHHHHHH
Confidence 5555 667789999999999999971 011368999999999999999999996 69999999999999999999
Q ss_pred hHHHHHHHHHHHhccCC-CcccccccCCCCCCCchhhhhhhhcccccccCCCcccccccccccccccccccchhHHHHHH
Q 045632 114 EVFMSMLELFFIKSKLP-KHNDHLLITPSSKPTKSVEQIELNSICCSEKTDHISFDNKNNKNKNNNTILKHNSIRYLCYV 192 (532)
Q Consensus 114 lG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 192 (532)
+|++++...+++..+.. .++. ++|.++ +. +++++. +.++..+|.
T Consensus 140 lGiivl~vail~~lg~~~~~l~-----------------------~aE~~g------~~----~~~~~~--p~i~~ta~~ 184 (483)
T PRK10750 140 MGIIVLAVAILPILGVGGMQLY-----------------------RAEMPG------PL----KDNKMR--PRIAETAKT 184 (483)
T ss_pred HHHHHHHHHHHHhcCCCchhee-----------------------ecccCC------CC----cccccc--hhHHHHHHH
Confidence 99999999999885522 2221 224322 10 013333 455777999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCchhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHH
Q 045632 193 VLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLL 272 (532)
Q Consensus 193 il~~~~~i~~ig~~lL~l~~~~~~~~~~~~~~~~~~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~l 272 (532)
++.+|+.+++++++++. .. + +++|||+|||+||+||+|||+.|+|++ |.+|+.++++++++|++
T Consensus 185 l~~iY~~lT~~~~~ll~--~~---G----------m~~fdAi~ha~saisTgGFs~~~~si~-~~~~~~i~~v~~~~mil 248 (483)
T PRK10750 185 LWLIYVLLTVACALALW--FA---G----------MDAFDAIGHSFSTIAIGGFSTHDASIG-YFDSPTINTIIAIFLLI 248 (483)
T ss_pred HHHHHHHHHHHHHHHHH--Hc---C----------CcHHHHHHHHHHHHhccCcCCCccccc-cccCHHHHHHHHHHHHH
Confidence 99999999999988753 22 3 689999999999999999999999965 55789999999999999
Q ss_pred hcccHHHHHHHHHHHHHhhhhhhhhHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHH
Q 045632 273 GNTLYPACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFY 352 (532)
Q Consensus 273 Ggigf~v~~~~~~~~~~r~~~~~~~~~~l~~~r~~~~~~l~~s~~~r~i~~~~~~l~~ig~l~l~~~~~~~~~~~~~~~~ 352 (532)
||+||.+++++. | ++ + . ++.+++.|.|.++.+.+++.+++++.++..|+. .++.
T Consensus 249 gg~~F~l~~~~~-----~--~~-~-------~-----~~~~~~~e~r~~l~~~~~~~~~~~~~l~~~~~~------~~~~ 302 (483)
T PRK10750 249 SGCNYGLHFSLL-----S--GR-S-------L-----KVYWRDPEFRMFIGVQLTLVVICTLVLWFHNVY------SSAL 302 (483)
T ss_pred HHhhHHHHHHHH-----h--Cc-c-------c-----ccccCCHHHHHHHHHHHHHHHHHHHHHHHHhcc------cCHH
Confidence 999999998742 1 00 0 0 112235788988888777777776665543431 1577
Q ss_pred HHHHHHHHHhhcc-CCccccCccCCCCchhHHHHHHHHhhcCC---cceEEe--------cc---c--cccCCCC-----
Q 045632 353 QKLVASLFEVVNS-RHTGESVLDLSIISPAILVLFVVMMYLPP---YTSFLP--------AR---N--CDEGDSK----- 410 (532)
Q Consensus 353 ~~~~~alFqsvSa-~TaGFs~~~~~~~~~~~~~iliilMfIGg---stt~~~--------~r---~--~~~~~~~----- 410 (532)
+++++++||++|+ ||+||++.|+++|++.++++++++||||| ||+..+ .| . ++..||+
T Consensus 303 ~~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~GSTaGGIKv~R~~vl~~~~~~~l~~~~~P~~V~~v 382 (483)
T PRK10750 303 MTLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSI 382 (483)
T ss_pred HHHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCcccCcccHHHHHHHHHHHHHHHHHHHhcCCCceeee
Confidence 9999999999999 99999999999999999999999999998 665331 11 1 2233553
Q ss_pred CcccccccchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHhcccCccccCCCccCccccCccccc
Q 045632 411 NCREKEKETKSLLECLAFSQLSYLAIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISC 490 (532)
Q Consensus 411 ~~~~~~~~~~~i~~~~~~~~l~~~~i~~~~i~~~e~~~~~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~ 490 (532)
++++|+++++.+++...+..++.+++.+..+.+...+ +++.+++++++||++|+|+++|.+
T Consensus 383 ~~~gr~i~~~~v~~v~~~~~ly~~~~~~~~~~l~~~g--------~~~~sA~~~v~s~l~nvG~s~G~~----------- 443 (483)
T PRK10750 383 KLGNRALPERILEAVWGFFSAYALVFIVSMLAIIATG--------VDDFSAFASVVATLNNLGPGLGVV----------- 443 (483)
T ss_pred eECCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHhcCCCCCchhh-----------
Confidence 3468888888888877777666544433322223221 679999999999999999999973
Q ss_pred cCccccccccCChHHHHHHHHHHHhcCCCCCcc---CCCccee
Q 045632 491 KDKWFGLVGKWSNGGKLILILVMFFGRIKKFNM---KGGKAWK 530 (532)
Q Consensus 491 ~~~~~s~~~~l~~~~Klili~lM~iGRl~~~~~---~gg~~~~ 530 (532)
.+||+ ++|+.+|++++++|++||+|++|+ ..+++||
T Consensus 444 -~~~f~---~l~~~~K~il~~~MllGRLEi~tvl~~l~~~fwr 482 (483)
T PRK10750 444 -ADNFT---SMNPVAKWILIANMLFGRLEVFTLLVLFTPTFWR 482 (483)
T ss_pred -ccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 35776 999999999999999999999998 4777786
No 3
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=100.00 E-value=1e-51 Score=436.43 Aligned_cols=358 Identities=21% Similarity=0.321 Sum_probs=262.0
Q ss_pred CCCcccceeeecccccccCcceeeC-CccChHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCCcccccccCCCCCCCchh
Q 045632 70 DPKTFDVFFTSVSAATDSSMGTVEM-EVFSNSQLIIMTILMLAGGEVFMSMLELFFIKSKLPKHNDHLLITPSSKPTKSV 148 (532)
Q Consensus 70 ~~s~~dAlF~avSa~t~TGls~v~~-~~~~~~~q~ii~~Li~iGGlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (532)
+.+++||+|||+||+||||++++|. ++++.++|+|+++|+|+||+|++++...++...++|.+..++
T Consensus 13 ~~s~~dA~FeavSa~ttTGltv~~~~~~~~~~~~~~r~~l~~iGGlG~~v~~~~~l~~~g~~~~~~~~------------ 80 (390)
T TIGR00933 13 PLSFIDALFTATSAVTTTGLTVLDTLESLPKAGLFLRSLLQQIGGLGFMVLAVAILILLGKKISLGAR------------ 80 (390)
T ss_pred CCCHHHHHHhhHhhcccCCCeEccChhhcCHhHHHHHHHHHHHcChHHHHHHHHHHHHHccccCHHHH------------
Confidence 5799999999999999999999986 899999999999999999999999999988876554332211
Q ss_pred hhhhhhcccccccCCCcccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCch
Q 045632 149 EQIELNSICCSEKTDHISFDNKNNKNKNNNTILKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQ 228 (532)
Q Consensus 149 ~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iil~~~~~i~~ig~~lL~l~~~~~~~~~~~~~~~~~~ 228 (532)
+. +.|+.++. +.+++. +.++...|+++.+|++..+++++.+.+. + .+
T Consensus 81 --l~-----~~e~~~~~----------~~~~~~--~~i~~~~~~~~~iy~~lt~l~~~~~~~~-----g---------~~ 127 (390)
T TIGR00933 81 --LY-----LAEALGPL----------SDDKLL--PLIKNTAKFIFVIYLLGTILLAVRFVLT-----G---------WM 127 (390)
T ss_pred --HH-----HHHhCCCC----------CcccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----c---------ch
Confidence 11 22333210 012223 4567778888888888777766653211 1 15
Q ss_pred hHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhhhHHHhhcccccc
Q 045632 229 AETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKITKREECDYLLKNYREIG 308 (532)
Q Consensus 229 ~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lGgigf~v~~~~~~~~~~r~~~~~~~~~~l~~~r~~~ 308 (532)
++|||+|||+||+||+||++.|+|..+|.+++.++++++++|++||+||++++++.. ..| |. .
T Consensus 128 ~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF~v~~~~~~--~~~---~~--------~---- 190 (390)
T TIGR00933 128 PLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGFTVHYDVYL--LLR---KR--------V---- 190 (390)
T ss_pred HHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCHHHHHHHHH--Hcc---cC--------c----
Confidence 899999999999999999999995556667888999999999999999999986421 001 10 0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHhhcc-CCccccCccCCCCchhHHHHHH
Q 045632 309 YDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNS-RHTGESVLDLSIISPAILVLFV 387 (532)
Q Consensus 309 ~~~l~~s~~~r~i~~~~~~l~~ig~l~l~~~~~~~~~~~~~~~~~~~~~alFqsvSa-~TaGFs~~~~~~~~~~~~~ili 387 (532)
+++ .++.|..+.++++++.++++.+++.|+++ ..++.+ .+..+++.||++|+ ||+||++.|+++|++..+++++
T Consensus 191 -~~l--~~~~~~~~~~~~~l~~~~~i~~~l~~~~~-~~~~~~-~~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~ 265 (390)
T TIGR00933 191 -FKL--SLDTKVRLFVTFLLLAIGFILFLLLERGN-TLYSYS-FGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLL 265 (390)
T ss_pred -cee--ecCccHHHHHHHHHHHHHHHHHHHHHHcc-cccCCC-HHHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHH
Confidence 112 23444455556667777777777777653 223333 35678888999999 9999999999999999999999
Q ss_pred HHhhcCC---cceEEe--------cc---c--cccCCCCCcccccccchhHHHHHHHHHHHHHHH--HHHHHHHHccCCC
Q 045632 388 VMMYLPP---YTSFLP--------AR---N--CDEGDSKNCREKEKETKSLLECLAFSQLSYLAI--FIILICITERHKM 449 (532)
Q Consensus 388 ilMfIGg---stt~~~--------~r---~--~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~i--~~~~i~~~e~~~~ 449 (532)
++||||| ||+..+ +| . ++..+|+.+.+|+++++.+.++.....++++++ ++++++..|...
T Consensus 266 ~lMfIGg~~gSTaGGiK~~r~~vl~~~~~~~~~~~~~~~~v~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 344 (390)
T TIGR00933 266 LLMFIGGCSGSTAGGIKTTTFAILLKQVYREIRRGIHPRIIFSRRIGGKTIDKAILISVWSFFLVFALIFLLSILELIS- 344 (390)
T ss_pred HHHHHcCCCcccCCchHHHHHHHHHHHHHHHHHccCCCceEEeEEECCeehHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9999997 554321 11 1 223466667888888888888776655544433 333333333110
Q ss_pred CCCCCCccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhcC
Q 045632 450 KQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGR 517 (532)
Q Consensus 450 ~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iGR 517 (532)
.++++.+++||++||++|||+|+|.. ++++|+.+|++++++|++||
T Consensus 345 ----~~~~~~~~~fe~~Sa~~tvGls~g~~------------------~~~l~~~~k~il~~~M~~GR 390 (390)
T TIGR00933 345 ----SGYDFLTSLFEVVSAFGTVGLSVGLT------------------TANLPDAGKLILIVLMFIGR 390 (390)
T ss_pred ----cCCCHHHHHHHHHHHhcCcCCCCCCC------------------cccCCHHHHHHHHHHHHcCC
Confidence 12789999999999999999999951 46999999999999999999
No 4
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-48 Score=417.28 Aligned_cols=386 Identities=19% Similarity=0.296 Sum_probs=270.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccceeeecccccccCcceee-CCccChHHHHHHHHHHHHhhhHHHHHHH
Q 045632 43 LHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVE-MEVFSNSQLIIMTILMLAGGEVFMSMLE 121 (532)
Q Consensus 43 l~~~~~~~i~liGalll~l~~~~~~~~~~s~~dAlF~avSa~t~TGls~v~-~~~~~~~~q~ii~~Li~iGGlG~~~~~~ 121 (532)
+....|.+...++++|+... +..||+||++|++|+||.++.. +|++++..++++..+.|+||+|+.++..
T Consensus 69 i~~~~w~~~~~~~~~pF~~~---------s~~~a~fe~lS~~tttg~t~~~g~~~~p~~il~~r~~l~wlGgmgi~vl~~ 139 (499)
T COG0168 69 IVALFWLVASSFGALPFTAS---------SSTDALFEGLSGVTTTGATVLFGLDSLPQSILFWRSQLGWLGGMGIIVLAV 139 (499)
T ss_pred HHHHHhHHHHHHHHHHHHhh---------hccceEEeeeceEecCCceEecCCccccHHHHHHHHHHCCCCeehHHHHHH
Confidence 44445555555556555531 1179999999999999999987 6999999999999999999999999999
Q ss_pred HHHHhccCCCcccccccCCCCCCCchhhhhhhhcccccccCCCcccccccccccccccccccchhHHHHHHHHHHHHHHH
Q 045632 122 LFFIKSKLPKHNDHLLITPSSKPTKSVEQIELNSICCSEKTDHISFDNKNNKNKNNNTILKHNSIRYLCYVVLGYFLIVH 201 (532)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iil~~~~~i~ 201 (532)
.++++.+.... +++ .+|+.++. +.+++. +.++..++.++.+|++..
T Consensus 140 ~il~~~~~~~~-----------------~l~-----~~e~~~~~----------~~~~i~--~~i~~~~~~~~~iy~~~t 185 (499)
T COG0168 140 AILPRLGVGGM-----------------RLY-----RAEARGPT----------KMGKIR--PRIKNTAKTLWLIYLLLT 185 (499)
T ss_pred HHHHhcccHHH-----------------HHH-----HHHccCCC----------ccccch--HHHHHHHHHHHHHHHHHH
Confidence 99988642211 121 22333210 012232 566777777777777766
Q ss_pred HHHHHHHHHHHhhccchhhhhhhcCchhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHhcccHHHHH
Q 045632 202 VGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACL 281 (532)
Q Consensus 202 ~ig~~lL~l~~~~~~~~~~~~~~~~~~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lGgigf~v~~ 281 (532)
+++++.+. . .+ ++++||+|||+||+||+|||+.|+|+++|++|+.++++++++|++||+||++++
T Consensus 186 ~l~~~~~~----~-~g----------m~~~dAi~hs~Sa~~ngGFS~~~~Si~~f~~~~~i~~i~~~liI~GgigF~v~~ 250 (499)
T COG0168 186 ILLALAFI----L-AG----------MPLFDAIFHSMSAFNNGGFSTHDASIGYFNGSPLINLIITILIILGGIGFPVHY 250 (499)
T ss_pred HHHHHHHH----h-cc----------CCHHHHHHHHHHHhhcCCCCCCcchhhhcccChhHHHHHHHHHHHhcCChHHHH
Confidence 66555422 1 12 689999999999999999999999999998799999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCC----HHHHHHH
Q 045632 282 RFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLN----FYQKLVA 357 (532)
Q Consensus 282 ~~~~~~~~r~~~~~~~~~~l~~~r~~~~~~l~~s~~~r~i~~~~~~l~~ig~l~l~~~~~~~~~~~~~~----~~~~~~~ 357 (532)
++..+. | +.+.+++| .+.+..+. +.+...+++.++++|+++. ...++ +.+++++
T Consensus 251 ~~~~~~--k-----~~~~l~~d------------~k~~~~~~--~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~f~ 308 (499)
T COG0168 251 RLLIWI--K-----SLKFLSLD------------PKLRFTLT--LLLLATGLLALFLLELNNP-DGGYSFFLSLRDAFFQ 308 (499)
T ss_pred HHHHhh--h-----hhhhhhcC------------hhHHHHHH--HHHHHHHHHHHHHHHHhcc-cccchhHHHHHHHHHh
Confidence 875442 1 11222333 33333333 3344445555555565542 11223 4555555
Q ss_pred H---HHHhhccCCccccCccCCCCchhHHHHHHHHhhcCC---cceEEe-----------ccc--cccCCCC-----Ccc
Q 045632 358 S---LFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPP---YTSFLP-----------ARN--CDEGDSK-----NCR 413 (532)
Q Consensus 358 a---lFqsvSa~TaGFs~~~~~~~~~~~~~iliilMfIGg---stt~~~-----------~r~--~~~~~~~-----~~~ 413 (532)
+ +||++++|| ||+++|.++|+++++++++++||||| ||+..+ .+. ++..+|+ +++
T Consensus 309 ~vs~~f~tg~trt-gf~~vd~~~~~~~~~~~~~~~MfIGg~~gSTaGGIK~~r~~il~~~~~~~l~~~~~p~~v~~~k~~ 387 (499)
T COG0168 309 SVSAIFQTGFTRT-GFNTVDLSQWPPATLVLLMLLMFIGGSPGSTAGGIKTTRFAVLLKALKRELRRLGHPNAVISVKIF 387 (499)
T ss_pred HhHHheecccccC-CCcccchhhcChHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHHhcCcccceeeEEc
Confidence 5 666566666 88888888899999999999999998 554321 111 1123444 457
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCc-cHHHHHHHHhcccCccccCCCccCccccCccccccC
Q 045632 414 EKEKETKSLLECLAFSQLSYLAIFIILICITERHKMKQDPLNF-NVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKD 492 (532)
Q Consensus 414 ~~~~~~~~i~~~~~~~~l~~~~i~~~~i~~~e~~~~~~~~~~~-~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~ 492 (532)
+|+++++++.++..+..++.+++.+..+.+...+ + ++.+++||++||++|||||+|.+. + |.
T Consensus 388 ~r~i~~~~i~~~~~~~~l~~~~~~i~~~~l~~~~--------~~~~~~~lfEv~SA~gtVGlSlG~t~-----~----~~ 450 (499)
T COG0168 388 GRAIDEDTIRKALAFFFLYLLILIIGALILILTG--------YDPFIDALFEVVSAFGTVGLSLGITG-----D----LA 450 (499)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHhhcCCCCCCCCC-----C----Cc
Confidence 8889999999998888777665544333333221 2 499999999999999999999862 1 12
Q ss_pred ccccccccCChHHHHHHHHHHHhcCCCCCccC---CCccee
Q 045632 493 KWFGLVGKWSNGGKLILILVMFFGRIKKFNMK---GGKAWK 530 (532)
Q Consensus 493 ~~~s~~~~l~~~~Klili~lM~iGRl~~~~~~---gg~~~~ 530 (532)
.+ .. +++.+|++++++|++||+|++|+. -++.|+
T Consensus 451 ~~---~~-~~~~~K~vli~~M~~GRleil~~lv~~~~~~~~ 487 (499)
T COG0168 451 SN---FA-LPPLAKLVLIALMLIGRLEILTVLVLFTPLFWR 487 (499)
T ss_pred cc---cc-cCchHHHHHHHHHHhhccchhhHHHhhhhhhcc
Confidence 22 23 889999999999999999999983 566665
No 5
>KOG1341 consensus Na+/K+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-44 Score=374.13 Aligned_cols=335 Identities=32% Similarity=0.561 Sum_probs=282.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCchhHHHHHHHHhhcccCccccccCCCccccccChh
Q 045632 182 KHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSG 261 (532)
Q Consensus 182 ~~~~~~~~~~iil~~~~~i~~ig~~lL~l~~~~~~~~~~~~~~~~~~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~ 261 (532)
||+++|++.-++..||++..++|.+.+..|....-..+......+..+.|+|+|+|+|+|+|.||++.++|+..|+.+.+
T Consensus 456 EyRAlk~Lcsil~vY~l~~nIvafV~llv~i~t~k~~~eVv~~~gisp~ww~~FTs~S~F~nlGfslt~~smvsF~kai~ 535 (854)
T KOG1341|consen 456 EYRALKCLCSILVVYFLGWNIVAFVTLLVFIYTAKTSREVVRSKGISPGWWAFFTSMSAFNNLGFSLTPDSMVSFNKAIF 535 (854)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcccCCCCcchhhhhhHHHHHhccCcccCcccccccccchh
Confidence 49999999999999999999999998877765443444556666778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhhhh-----hhhhHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 045632 262 LLLLLIPQVLLGNTLYPACLRFAIWVLKKITK-----REECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIF 336 (532)
Q Consensus 262 ~~~vi~~lm~lGgigf~v~~~~~~~~~~r~~~-----~~~~~~~l~~~r~~~~~~l~~s~~~r~i~~~~~~l~~ig~l~l 336 (532)
.+++.+.++++|++|||+++++++|...|.++ +|...++++||||| +..+||+..+++++.+.+.+.++.+++|
T Consensus 536 plil~~~fIi~GNTgFPi~Lr~iIWimyKit~~~~~~~Eal~fLldHpRrc-fTlLfps~~tw~Lf~tl~~lni~d~ilF 614 (854)
T KOG1341|consen 536 PLILMIPFIIIGNTGFPIFLRFIIWIMYKITRFSSQFKEALYFLLDHPRRC-FTLLFPSGATWVLFLTLLGLNIIDLILF 614 (854)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHhhhcccchhhHHHhhhHHhcCCcce-eEEEecCccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988763 55567789999998 8899999999999999999999999999
Q ss_pred HHHhcCccccCCCCHHHHHHHHHHHhhccCCccccCccCCCCchhHHHHHHHHhhcCCcceEEeccccccC-------CC
Q 045632 337 CSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLPARNCDEG-------DS 409 (532)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~alFqsvSa~TaGFs~~~~~~~~~~~~~iliilMfIGgstt~~~~r~~~~~-------~~ 409 (532)
+.++|++...++++-++++..++||+|++|||||+++|.++++|+.++.+|+||+|..+|-++.+|+.+.. ++
T Consensus 615 ~vlD~gS~~v~~lskgyRvv~~lFQsV~TRtaGftvVDLSqLhPaIlVsymlMMYisvyplaisir~tnvyEe~slg~y~ 694 (854)
T KOG1341|consen 615 MVLDFGSEVVESLSKGYRVVNALFQSVCTRTAGFTVVDLSQLHPAILVSYMLMMYISVYPLAISIRRTNVYEERSLGLYA 694 (854)
T ss_pred hhhhcchHHHHhchhHHHHHHHHHHHhhccccCceEeEhHHhChHHHHHHHHHHhccccceeEeeeccceeehhcCCccc
Confidence 99999887788899999999999999999999999999999999999999999999998866666542111 10
Q ss_pred ------CCc-----ccccccchhHHHHHHHH----HHHHHHHHHHHHHHHccCCCCC-CCCCccHHHHHHHHhcccCccc
Q 045632 410 ------KNC-----REKEKETKSLLECLAFS----QLSYLAIFIILICITERHKMKQ-DPLNFNVLSITIEVISAYGNVG 473 (532)
Q Consensus 410 ------~~~-----~~~~~~~~~i~~~~~~~----~l~~~~i~~~~i~~~e~~~~~~-~~~~~~~~~~lFevvSA~~tvG 473 (532)
+.. .+...+.+.....++.. .+++++++.++||+.|+++..+ ++++++.++++|||+||+||||
T Consensus 695 e~t~tEdd~ne~dhdg~s~~rKsf~~~hl~~QLS~DLWyLfLglFIIcIcEGrki~~~~~pnFnvfaIlfEVVsaygtVg 774 (854)
T KOG1341|consen 695 EDTETEDDNNENDHDGNSKKRKSFLGDHLRRQLSFDLWYLFLGLFIICICEGRKIEDVDEPNFNVFAILFEVVSAYGTVG 774 (854)
T ss_pred cccccccCcccccccccchhhhhHHHHHHHHHhhhhHHHHHHhhheEEEeeccccCCCCCCCcchhhHHHHHHHhhceeE
Confidence 000 00000113334444444 4557888999999999776544 5667999999999999999999
Q ss_pred cCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhcCCCCCccCCCcce
Q 045632 474 FSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFNMKGGKAW 529 (532)
Q Consensus 474 ls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iGRl~~~~~~gg~~~ 529 (532)
+|+|+ |+.|-++++.+...+|+|++.+|+.||++.+|.+-++|-
T Consensus 775 lslgy------------~~tn~SLsaqfttisklViiAl~irgr~RgLp~alDrai 818 (854)
T KOG1341|consen 775 LSLGY------------PNTNESLSAQFTTISKLVIIALLIRGRHRGLPYALDRAI 818 (854)
T ss_pred EEEec------------CCCCcchhhhhHHHHHHHHHHHHHhhccCCCCcccccee
Confidence 99998 466777889999999999999999999999999988874
No 6
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=100.00 E-value=8.1e-41 Score=349.42 Aligned_cols=307 Identities=24% Similarity=0.359 Sum_probs=155.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCchhHHHHHHHHhhcccCccccccCCCccccccChhH
Q 045632 183 HNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGL 262 (532)
Q Consensus 183 ~~~~~~~~~iil~~~~~i~~ig~~lL~l~~~~~~~~~~~~~~~~~~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~ 262 (532)
|+..+...|+++.++..++.++++.+.+++...............+++|||+|||+||+||+||++.|+|+++|++++.+
T Consensus 7 ~~~~~~~~~~v~~~~~~~~~i~~i~l~~~~~~~~~~~~~~~~~~g~~~~~aifhs~Sa~~t~GFs~~~~sl~~f~~~~~i 86 (354)
T PF02386_consen 7 YRALRRLIKIVPSYTFTIEIIGAIYLGLTFIYIYLYILAILHLGGMPLFDAIFHSMSAFSTGGFSPFSDSLAPFNSNPFI 86 (354)
T ss_dssp ------------------SSSHHHHHHHHHHHHHHHHHHHHHHHT--SHHHHTTTHHHHTT----SSTTGGGSS---TTH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHhcCCceecCCceecccccHHH
Confidence 55666667888889999999998888777654322111111122478999999999999999999999999999887999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhhhHHHhhcccccccccccchhhHHHHHHHHHHHH------------H
Q 045632 263 LLLLIPQVLLGNTLYPACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFI------------I 330 (532)
Q Consensus 263 ~~vi~~lm~lGgigf~v~~~~~~~~~~r~~~~~~~~~~l~~~r~~~~~~l~~s~~~r~i~~~~~~l~------------~ 330 (532)
+++++++|++||+||++++++..+...|.. +++.+.. +.+.+.|..+.+..... .
T Consensus 87 ~~i~~~lmi~Gg~~F~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 153 (354)
T PF02386_consen 87 EIIIIILMILGGLGFPLYYRILRGRRYRIT-KREFSLF------------FKDHERRTFLLLFPGVVLLFLFELWNGLNL 153 (354)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHTTTST------T-HHHH------------HTSHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhccccccc-ccccccc------------cccccceeEEEeehHHHHHHHHHHhccccc
Confidence 999999999999999999986432111100 1111111 11344444432221111 1
Q ss_pred HHHHHHHHHhcCccccCCCCHHHHHHHHHHHhhccCCccccCccCCCCchhHHHHHHHHhhcCC---cceEEe-------
Q 045632 331 VQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPP---YTSFLP------- 400 (532)
Q Consensus 331 ig~l~l~~~~~~~~~~~~~~~~~~~~~alFqsvSa~TaGFs~~~~~~~~~~~~~iliilMfIGg---stt~~~------- 400 (532)
.+++.++..|++++.+++.+..++..+++||+.+.|||||++.|+++|++..+++++++||||| ||+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~gSTaGGiK~~r~~i 233 (354)
T PF02386_consen 154 VGTIIFLILEWNSPTFGGLPFGSKRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSPGSTAGGIKITRFAI 233 (354)
T ss_dssp -----------------SSHHHHHHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-TTSS--SS-HHHHHH
T ss_pred ccccccccccccccccCCCcHHHHHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCccccccCCcceehhhH
Confidence 1222233345554455556666666666666665699999999999999999999999999998 554321
Q ss_pred -cccc----ccCCC-----CCcccccccchhHHHHHHHHHHHHHHHHH--HHHHHHccCCCCCCCCCccHHHHHHHHhcc
Q 045632 401 -ARNC----DEGDS-----KNCREKEKETKSLLECLAFSQLSYLAIFI--ILICITERHKMKQDPLNFNVLSITIEVISA 468 (532)
Q Consensus 401 -~r~~----~~~~~-----~~~~~~~~~~~~i~~~~~~~~l~~~~i~~--~~i~~~e~~~~~~~~~~~~~~~~lFevvSA 468 (532)
+|.. +..+| .+..+|+++++.+.++..+..++++++.+ ..+...+.+ ..+.+++||++||
T Consensus 234 l~~~~~~~~~~~~p~~~~~~~~~~r~i~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~lfe~~Sa 305 (354)
T PF02386_consen 234 LLKSIREIKRLIHPGAVSPVRFNGRRISEQTVRKAFAFFFLYFIIVFISTLLLSLDGLD--------FSFFDALFEVISA 305 (354)
T ss_dssp HHHHHHHHHHHH-SSS-----SSS---TTSHHHHHCCHHHHHHHHHHHHHHHHHHHSS---------H--HHHHHHHHHH
T ss_pred HHhhHHHHHHHhcCCCccceeecceeechhhhhhHHHHHHHHHHHHHHHHHHHHhcccc--------hHHHHHHHHHHHH
Confidence 1211 11233 23345788888888777666555544433 233333211 1169999999999
Q ss_pred cCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhcCCCCCccCC
Q 045632 469 YGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFNMKG 525 (532)
Q Consensus 469 ~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iGRl~~~~~~g 525 (532)
++|||+|+|.+ +.+++ ..++.+|++++++|++||||++|+.-
T Consensus 306 ~gtvGls~G~~------------~~~~s---~~~~~~K~vli~~M~~GRle~~~~l~ 347 (354)
T PF02386_consen 306 FGTVGLSLGIT------------TPNLS---FSGPFSKLVLIFLMLLGRLEILPVLL 347 (354)
T ss_dssp CTT--S--SSS----------------S---SS-HHHHHHHHHHHHHHHTTTHHHHT
T ss_pred hcCcCCCCCCC------------CCCcc---chhhHHHHHHHHHHHHhCccHHHHHH
Confidence 99999999973 34554 44477999999999999999999843
No 7
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=99.92 E-value=3.4e-23 Score=221.36 Aligned_cols=349 Identities=16% Similarity=0.098 Sum_probs=227.4
Q ss_pred CCCcccceeeecccccccCcceeeCC-ccChHHHHH-HHHHHHHhhh-HHHHHHHHHHHhccCCCcccccccCCCCCCCc
Q 045632 70 DPKTFDVFFTSVSAATDSSMGTVEME-VFSNSQLII-MTILMLAGGE-VFMSMLELFFIKSKLPKHNDHLLITPSSKPTK 146 (532)
Q Consensus 70 ~~s~~dAlF~avSa~t~TGls~v~~~-~~~~~~q~i-i~~Li~iGGl-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (532)
+.++--|+=+|+|=+|||-.+-+.-| +++.+.|.. +.+++.+-.. |+.+.. .+.|...+++. +
T Consensus 97 ~~~~~lafnTa~SF~TNTn~Q~YsgE~~lsy~sQm~~l~~~~F~saa~G~av~~-a~iRg~~~~~~-~------------ 162 (559)
T PRK05482 97 GMSPDLAFNTAVSFVTNTNWQHYSGESTLSYLSQMAGLTVQNFVSAATGIAVAI-ALIRGFARKST-G------------ 162 (559)
T ss_pred CCChhHHHHhHhhhhccCccccccCcchHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhccCC-C------------
Confidence 45676788899999999999988764 577766654 5566665554 555443 44443322210 0
Q ss_pred hhhhhhhhcccccccCCCcccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-h-----h
Q 045632 147 SVEQIELNSICCSEKTDHISFDNKNNKNKNNNTILKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSA-K-----H 220 (532)
Q Consensus 147 ~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iil~~~~~i~~ig~~lL~l~~~~~~~~-~-----~ 220 (532)
. +. +--.++.|.++.+.+=+-++.+++|. ....|.. + .
T Consensus 163 --------------~------------------lG--Nf~~D~~r~~~~vllPls~i~a~~lv--~~Gv~qt~~~~~~~~ 206 (559)
T PRK05482 163 --------------T------------------LG--NFWVDLTRSTLRVLLPLSLVIALLLV--SQGVPQTLDGYVTVT 206 (559)
T ss_pred --------------C------------------CC--chHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCcccCCCceeE
Confidence 0 00 11122234444444444455565543 2222210 0 0
Q ss_pred hhhh------cCchhHHHHHHHHhhcccCccccccCCCcccccc-ChhHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhh
Q 045632 221 VLEQ------KGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKE-NSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKITK 293 (532)
Q Consensus 221 ~~~~------~~~~~~~dalF~avSA~~taGfs~~~~sl~~~~~-~~~~~~vi~~lm~lGgigf~v~~~~~~~~~~r~~~ 293 (532)
.+++ .++..-..|+=| =.-|.+||-.. +|..+|.+ |++.+++.++++++||+||++.++..
T Consensus 207 tl~g~~q~i~~GPvAs~~aIK~--LGtNGGg~fg~-NSl~pfenP~plvNlv~~~LIilgglGf~v~~g~~--------- 274 (559)
T PRK05482 207 TLEGAKQTIPLGPVASQEAIKQ--LGTNGGGFFGA-NSAHPFENPTPLSNLVEMLAILLIPAALVFTFGRM--------- 274 (559)
T ss_pred eccCceeeecCCchHhHHHHHH--hcCCCCCCCCC-CCCccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 1111 111222233222 12245555432 58889998 99999999999999999999987631
Q ss_pred hhhhHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC-ccccCCC----CHHHH------HHHHHHHh
Q 045632 294 REECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWN-SEAMDDL----NFYQK------LVASLFEV 362 (532)
Q Consensus 294 ~~~~~~~l~~~r~~~~~~l~~s~~~r~i~~~~~~l~~ig~l~l~~~~~~-~~~~~~~----~~~~~------~~~alFqs 362 (532)
.+ | ++|+|.++.+..++.++++++++..|++ |+.++++ ++++| ...++||+
T Consensus 275 --------~~-~---------~rh~kivl~~~~iL~i~g~~~~~~~E~~~np~l~~l~~~gn~egKE~RfG~~~salF~s 336 (559)
T PRK05482 275 --------VG-D---------RRQGWAILAAMLVLFLAGLAVTMWAELQGNPALAALGIDGNMEGKEVRFGIAASALFAV 336 (559)
T ss_pred --------hc-C---------cCceehhHHHHHHHHHHHHHHHHHHHccCCcchhhccCCCCcccchhhhhhHHHHHHHH
Confidence 01 1 1378888999999999999999999987 4445555 55666 99999999
Q ss_pred hccC-Ccc-ccCccCCCCchhHHHHHHHHhhcC-C---cce--------EE--------eccccccCCCCCcccccccch
Q 045632 363 VNSR-HTG-ESVLDLSIISPAILVLFVVMMYLP-P---YTS--------FL--------PARNCDEGDSKNCREKEKETK 420 (532)
Q Consensus 363 vSa~-TaG-Fs~~~~~~~~~~~~~iliilMfIG-g---stt--------~~--------~~r~~~~~~~~~~~~~~~~~~ 420 (532)
+++| |+| |++. .++++|.+.++.+++|+|| + +|+ +. .+++ ++. .+.+||++++
T Consensus 337 vTtrtTaG~fNsm-~dsltp~~~lv~m~lMfIG~~~pGGtGgGl~~~~tfaIL~vfi~glmvG-rtp---e~~gRkI~~~ 411 (559)
T PRK05482 337 VTTAASTGAVNAM-HDSLTPLGGLVPLLNMQLGEVIFGGVGSGLYGMLVFVILAVFIAGLMVG-RTP---EYLGKKIEAR 411 (559)
T ss_pred HHhhhhcchHHHH-HHhhccHHHHHHHHHHHhCCCCCccchHhHHHHHHHHHHHHHHHhHccC-CCC---eEEccccCHH
Confidence 9996 788 9999 9999999999999999998 3 332 11 1244 332 3589999999
Q ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHccCCC-CCCCCCccHHHHHHHHhcccCccccCCC-ccCccccCccccccCcccc
Q 045632 421 SLLECLAFSQLSYLAIF--IILICITERHKM-KQDPLNFNVLSITIEVISAYGNVGFSTG-YSCERQLKPEISCKDKWFG 496 (532)
Q Consensus 421 ~i~~~~~~~~l~~~~i~--~~~i~~~e~~~~-~~~~~~~~~~~~lFevvSA~~tvGls~G-~~~~~~~~~~~~~~~~~~s 496 (532)
+++++.....+..+++. +.+....+.... ..++...++.+++||++||++|+|+|+| .
T Consensus 412 eik~A~~vilv~~~lVl~~taial~~~~~~~~~~n~g~hgfseiLyE~~SA~~tnGss~gGL------------------ 473 (559)
T PRK05482 412 EMKLAALAILVHPLLVLVGTALALATPAGRAGISNPGPHGFSEVLYAYTSAAANNGSAFAGL------------------ 473 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCHHHHHHHHHhhccccccccccC------------------
Confidence 99998887665544433 222222332110 0112225899999999999999999995 5
Q ss_pred ccccCChHHHHHHHHHHHhcCCCCCcc
Q 045632 497 LVGKWSNGGKLILILVMFFGRIKKFNM 523 (532)
Q Consensus 497 ~~~~l~~~~Klili~lM~iGRl~~~~~ 523 (532)
+++ ++++|++++++|++||.++++.
T Consensus 474 -t~~-t~~~niil~~~M~iGR~Gpit~ 498 (559)
T PRK05482 474 -GAN-TPFWNLTLGIAMLLGRFLPIIP 498 (559)
T ss_pred -CCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 335 9999999999999999998865
No 8
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=99.91 E-value=1.3e-23 Score=222.48 Aligned_cols=255 Identities=18% Similarity=0.130 Sum_probs=166.1
Q ss_pred hhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhh-hhh-hHHHhhccc
Q 045632 228 QAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKITK-REE-CDYLLKNYR 305 (532)
Q Consensus 228 ~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lGgigf~v~~~~~~~~~~r~~~-~~~-~~~~l~~~r 305 (532)
.+++||+|||+||+||||+++.|+. +++ ++.+++++++++++||+|++++...+....+++.+ +++ .+..-.++.
T Consensus 14 ~s~~dA~FeavSa~ttTGltv~~~~-~~~--~~~~~~~r~~l~~iGGlG~~v~~~~~l~~~g~~~~~~~~l~~~e~~~~~ 90 (390)
T TIGR00933 14 LSFIDALFTATSAVTTTGLTVLDTL-ESL--PKAGLFLRSLLQQIGGLGFMVLAVAILILLGKKISLGARLYLAEALGPL 90 (390)
T ss_pred CCHHHHHHhhHhhcccCCCeEccCh-hhc--CHhHHHHHHHHHHHcChHHHHHHHHHHHHHccccCHHHHHHHHHhCCCC
Confidence 5799999999999999999999852 333 57899999999999999999987654333333211 111 111111110
Q ss_pred ccccccccc--hhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHhhcc-CCccccCccCC---CC-
Q 045632 306 EIGYDHLLS--RSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNS-RHTGESVLDLS---II- 378 (532)
Q Consensus 306 ~~~~~~l~~--s~~~r~i~~~~~~l~~ig~l~l~~~~~~~~~~~~~~~~~~~~~alFqsvSa-~TaGFs~~~~~---~~- 378 (532)
+ ..++.| +...|.++.+++++.+++++.++.. + + +++++|+||++|+ +|+||++.|.+ .+
T Consensus 91 ~--~~~~~~~i~~~~~~~~~iy~~lt~l~~~~~~~~--------g--~-~~~~~Aif~avSa~~taGFs~~~~~~~~~~~ 157 (390)
T TIGR00933 91 S--DDKLLPLIKNTAKFIFVIYLLGTILLAVRFVLT--------G--W-MPLFDAIFHSISAFNNGGFSTHSDSSIGYFH 157 (390)
T ss_pred C--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------c--c-hHHHHHHHHHHHHHhcCCcCCCCCcchhhcc
Confidence 0 111111 3567778888877777776665432 1 1 5789999999999 99999999974 23
Q ss_pred chhHHHHHHHHhhcCCcc--eEEeccc-cccCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCC
Q 045632 379 SPAILVLFVVMMYLPPYT--SFLPARN-CDEGDSKNCREKEKETKSLLECLAFSQLSYLAIFIILICITERHKMKQDPLN 455 (532)
Q Consensus 379 ~~~~~~iliilMfIGgst--t~~~~r~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~i~~~~i~~~e~~~~~~~~~~ 455 (532)
++..+++.+++|++||.. .+..+.. +++. .++..++... .....+.++.++...+.+.|.++...+...
T Consensus 158 ~~~i~~v~~~lm~iGg~gF~v~~~~~~~~~~~------~~~l~~~~~~--~~~~~~~l~~~~~i~~~l~~~~~~~~~~~~ 229 (390)
T TIGR00933 158 DPSVNLVIAFLIILGGLGFTVHYDVYLLLRKR------VFKLSLDTKV--RLFVTFLLLAIGFILFLLLERGNTLYSYSF 229 (390)
T ss_pred ChHHHHHHHHHHHHHhcCHHHHHHHHHHcccC------cceeecCccH--HHHHHHHHHHHHHHHHHHHHHcccccCCCH
Confidence 455889999999999832 1111110 1110 0112211111 122222233344445555564331111112
Q ss_pred ccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhcCCCCCccCCC
Q 045632 456 FNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFNMKGG 526 (532)
Q Consensus 456 ~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iGRl~~~~~~gg 526 (532)
.+..++.||++|+.+|+|+++.+ .++|++.+|++++++|++|. .+.+++||
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d-------------------~~~~~~~~~lll~~lMfIGg-~~gSTaGG 280 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTID-------------------FAALPTATLVLLLLLMFIGG-CSGSTAGG 280 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccC-------------------hhhcCHHHHHHHHHHHHHcC-CCcccCCc
Confidence 46889999999999999999976 35899999999999999999 88899887
No 9
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=99.83 E-value=4.3e-20 Score=203.36 Aligned_cols=302 Identities=17% Similarity=0.136 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCC---------CCCCCcccceeeecccccccCcceee--CCcc--ChHHHHHHHHH
Q 045632 42 MLHLCYFTALSLLGYFLLSVTKPRTH---------STDPKTFDVFFTSVSAATDSSMGTVE--MEVF--SNSQLIIMTIL 108 (532)
Q Consensus 42 ~l~~~~~~~i~liGalll~l~~~~~~---------~~~~s~~dAlF~avSa~t~TGls~v~--~~~~--~~~~q~ii~~L 108 (532)
.++..||+.+-++|.+.+.. +.... .+-..++-|+|+|+|||||+|+++.+ +..| +.+.++++++|
T Consensus 453 ~Iv~~Y~~~~~llG~i~l~~-wi~~~~~~~~~l~~~gin~~W~aiFhAVSAFnNAGFsL~~dSM~~F~~~~~vllvm~~L 531 (800)
T TIGR00934 453 SIVLVYFLGFNILGFVLLLP-WINHVKTYSEVVRSKGVSPTWWGFFTAMSAFANLGLTLTPESMVSFNKNSYLLLLMIWF 531 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhcCccHHHHHhhcCccHHHHHHHHHHHHHhcCCCCcCCCcchhhccCccHHHHHHHH
Confidence 57778999999999988763 32211 11235789999999999999999998 3344 57999999999
Q ss_pred HHHhhhHHHHHHHHHHHhccCCCcccccccCCCCCCCchhhhhhhhcccccccCCCccccccccccccccccc-ccchhH
Q 045632 109 MLAGGEVFMSMLELFFIKSKLPKHNDHLLITPSSKPTKSVEQIELNSICCSEKTDHISFDNKNNKNKNNNTIL-KHNSIR 187 (532)
Q Consensus 109 i~iGGlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 187 (532)
|.+||+||.++..++.....+......+ ..+.+. --.++ + +.... ..+ +
T Consensus 532 Ii~GntGFPVllrliiw~~~k~~~~~s~----------~~e~l~-------fll~~---------p--Rr~~s~Lfp--s 581 (800)
T TIGR00934 532 IIIGNTGFPIFLRLIIWILFKISPDLSK----------RKESLG-------FLLDH---------P--RRCFTLLFP--S 581 (800)
T ss_pred HHHcccchHHHHHHHHHHHhhccccccc----------hhhhhh-------hhccC---------c--cceeccccc--c
Confidence 9999999999988876432111100000 000000 00000 0 00000 001 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCc-hhHHHHHHHHhhcccCccccccCCCccccccChhHHHHH
Q 045632 188 YLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGL-QAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLL 266 (532)
Q Consensus 188 ~~~~iil~~~~~i~~ig~~lL~l~~~~~~~~~~~~~~~~~-~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi 266 (532)
...++++.+++++.++|++++++..+.++ .+++.+. ..+++|+|+|+++ .||||+++|.+ .. ++..+++.
T Consensus 582 ~~T~ill~tt~iL~~ig~ilf~lLE~nn~----tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls--~L--spatlvl~ 652 (800)
T TIGR00934 582 GATWWLFFTLVGLNAIDLILFIILDWGSS----VVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLS--QL--HPAIQVSY 652 (800)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcCcc----ccccCCHHHHHHHHHHHhccc-ccccccccchH--hc--ChhHHHHH
Confidence 34677888899999999998877665332 2333332 6899999999999 59999999865 23 46789999
Q ss_pred HHHHHHhcccHHHHHHH------HHHHHHhhhhhhhhHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 045632 267 IPQVLLGNTLYPACLRF------AIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLE 340 (532)
Q Consensus 267 ~~lm~lGgigf~v~~~~------~~~~~~r~~~~~~~~~~l~~~r~~~~~~l~~s~~~r~i~~~~~~l~~ig~l~l~~~~ 340 (532)
+++|++|+-..+.=.+. ....+....++++... ..+| . ++..+.+--+.+.+..++++++++.+.|
T Consensus 653 iiLMyIGa~PtaggIK~TTvyee~sLgi~~~~g~~~~~~--~~~r-----s-i~~~~irrqLs~dlw~I~l~~flI~I~E 724 (800)
T TIGR00934 653 MLMMYVSVLPLAISIRRTNVYEEQSLGLYNEENEEHEGE--SSTK-----S-FIGAHLRRQLSFDLWYIFLGLFIICICE 724 (800)
T ss_pred HHHHHhccCCccceeeceeeeheeheeeeeccCCccccc--cccc-----c-ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998541100000 0000000001111100 0111 1 1123333333333444455555555555
Q ss_pred cCccccCC-CCHHHHHHHHHHHhhcc-CCccccCcc-------CCCCchhHHHHHHHHhhcC
Q 045632 341 WNSEAMDD-LNFYQKLVASLFEVVNS-RHTGESVLD-------LSIISPAILVLFVVMMYLP 393 (532)
Q Consensus 341 ~~~~~~~~-~~~~~~~~~alFqsvSa-~TaGFs~~~-------~~~~~~~~~~iliilMfIG 393 (532)
-.+ +.+ .+....+++.+||++|| .|+|+|+.. .++|++.+|++++++||+|
T Consensus 725 ~~~--l~~~~~~~fs~f~ILFEVVSAyGTVGLSlG~p~~~~SfSg~ls~~sKLVII~vM~~G 784 (800)
T TIGR00934 725 GRK--IQDPDPPNFNVFNILFEVVSAYGTVGLSLGYSCSNYSFSGQFTTLSKLVIIAMLIRG 784 (800)
T ss_pred Ccc--ccccccccccHHHHHhhhhhhccceeecCCCCCcccccCCCCCcchHHHHhHHHHcc
Confidence 321 211 12233678899999999 999999983 5799999999999999998
No 10
>PRK10750 potassium transporter; Provisional
Probab=99.81 E-value=5.2e-19 Score=190.68 Aligned_cols=248 Identities=12% Similarity=0.095 Sum_probs=162.5
Q ss_pred hhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhhhhhHHHhhccccc
Q 045632 228 QAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKITKREECDYLLKNYREI 307 (532)
Q Consensus 228 ~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lGgigf~v~~~~~~~~~~r~~~~~~~~~~l~~~r~~ 307 (532)
.++.||+|+|+|+++|||.+..++ ++.. .+.++++..++.++||+|+.++.-.+.-..+. -+.+-.+..-..|.+
T Consensus 96 ~s~~dA~FEs~Sg~TTTGaTvl~~-~~~~--p~sil~WRs~~qWiGGlGiivl~vail~~lg~-~~~~l~~aE~~g~~~- 170 (483)
T PRK10750 96 LTITDAFFESFSGLTTTGATTLVG-LDSL--PHAILFYRQMLQWFGGMGIIVLAVAILPILGV-GGMQLYRAEMPGPLK- 170 (483)
T ss_pred CCHHHHHHHHHHhccccchhccCC-hhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchheeecccCCCCc-
Confidence 468899999999999999999874 4333 35689999999999999998875432211110 011101111101100
Q ss_pred ccccccch--hhHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHhhcc-CCccccCccCC--CC-chh
Q 045632 308 GYDHLLSR--SRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNS-RHTGESVLDLS--II-SPA 381 (532)
Q Consensus 308 ~~~~l~~s--~~~r~i~~~~~~l~~ig~l~l~~~~~~~~~~~~~~~~~~~~~alFqsvSa-~TaGFs~~~~~--~~-~~~ 381 (532)
.+++.|+ ...|.++.+++.+++++++++++ .+++ +++|+||++|+ +|+||++.|.+ .+ ++.
T Consensus 171 -~~~~~p~i~~ta~~l~~iY~~lT~~~~~ll~~--------~Gm~----~fdAi~ha~saisTgGFs~~~~si~~~~~~~ 237 (483)
T PRK10750 171 -DNKMRPRIAETAKTLWLIYVLLTVACALALWF--------AGMD----AFDAIGHSFSTIAIGGFSTHDASIGYFDSPT 237 (483)
T ss_pred -ccccchhHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCc----HHHHHHHHHHHHhccCcCCCccccccccCHH
Confidence 1223333 56889999999999999887653 2454 56799999999 99999999855 33 466
Q ss_pred HHHHHHHHhhcCCcceEE----eccccccCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcc
Q 045632 382 ILVLFVVMMYLPPYTSFL----PARNCDEGDSKNCREKEKETKSLLECLAFSQLSYLAIFIILICITERHKMKQDPLNFN 457 (532)
Q Consensus 382 ~~~iliilMfIGgstt~~----~~r~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~i~~~~i~~~e~~~~~~~~~~~~ 457 (532)
.+++++++|++||-. |. .+|+++. ++..++. ..|.++...+...++....++..|.. ++....
T Consensus 238 i~~v~~~~milgg~~-F~l~~~~~~~~~~-------~~~~~~~-e~r~~l~~~~~~~~~~~~~l~~~~~~----~~~~~~ 304 (483)
T PRK10750 238 INTIIAIFLLISGCN-YGLHFSLLSGRSL-------KVYWRDP-EFRMFIGVQLTLVVICTLVLWFHNVY----SSALMT 304 (483)
T ss_pred HHHHHHHHHHHHHhh-HHHHHHHHhCccc-------ccccCCH-HHHHHHHHHHHHHHHHHHHHHHHhcc----cCHHHH
Confidence 889999999999822 11 1232210 1111111 23444433333333333333333321 011246
Q ss_pred HHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhcCCCCCccCCC
Q 045632 458 VLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFNMKGG 526 (532)
Q Consensus 458 ~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iGRl~~~~~~gg 526 (532)
+.+++||++|+.+|+|+++.+ .++|++.+|++++++|++|. .+.+++||
T Consensus 305 l~~s~Fq~vS~~tTtGF~t~d-------------------~~~w~~~~~~ll~~lMfIGG-~~GSTaGG 353 (483)
T PRK10750 305 LNQAFFQVVSMATTAGFTTDS-------------------IARWPLFLPVLLLCSAFIGG-CAGSTGGG 353 (483)
T ss_pred HHHHHHeeeecccCCCCCCCC-------------------hhhccHHHHHHHHHHHHHcC-CcccCccc
Confidence 889999999999999999865 24899999999999999999 88888887
No 11
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.3e-16 Score=172.55 Aligned_cols=247 Identities=21% Similarity=0.251 Sum_probs=144.8
Q ss_pred CCcccceeeecccccccCcceee--CCcc--ChHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCCcccccccCCCCCCCc
Q 045632 71 PKTFDVFFTSVSAATDSSMGTVE--MEVF--SNSQLIIMTILMLAGGEVFMSMLELFFIKSKLPKHNDHLLITPSSKPTK 146 (532)
Q Consensus 71 ~s~~dAlF~avSa~t~TGls~v~--~~~~--~~~~q~ii~~Li~iGGlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (532)
.++.||+|||+||+||.|+|+-| +..| +...|++..++|.+||+||.+...++... +..+.
T Consensus 197 m~~~dAi~hs~Sa~~ngGFS~~~~Si~~f~~~~~i~~i~~~liI~GgigF~v~~~~~~~~-k~~~~-------------- 261 (499)
T COG0168 197 MPLFDAIFHSMSAFNNGGFSTHDASIGYFNGSPLINLIITILIILGGIGFPVHYRLLIWI-KSLKF-------------- 261 (499)
T ss_pred CCHHHHHHHHHHHhhcCCCCCCcchhhhcccChhHHHHHHHHHHHhcCChHHHHHHHHhh-hhhhh--------------
Confidence 57899999999999999999887 4566 46999999999999999999998887654 10111
Q ss_pred hhhhhhhhcccccccCCCcccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcC
Q 045632 147 SVEQIELNSICCSEKTDHISFDNKNNKNKNNNTILKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKG 226 (532)
Q Consensus 147 ~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iil~~~~~i~~ig~~lL~l~~~~~~~~~~~~~~~~ 226 (532)
+- . +..++. ..++.+...+.+.+.+.+...+.. ..+
T Consensus 262 ----l~-----~------------------------d~k~~~------~~~~~~~~~~~l~~~~~~~~~~~~-----~~~ 297 (499)
T COG0168 262 ----LS-----L------------------------DPKLRF------TLTLLLLATGLLALFLLELNNPDG-----GYS 297 (499)
T ss_pred ----hh-----c------------------------ChhHHH------HHHHHHHHHHHHHHHHHHHhcccc-----cch
Confidence 10 0 011121 222333333333333333322210 001
Q ss_pred -chhHHHHHHHHhhcccCccccccCCCcccc-ccChhHHHHHHHHHHHhcc------cHHHHHHHHHHHHHhhhhhhhhH
Q 045632 227 -LQAETFSLFTIVSTFSNCGFVPTNENMIVF-KENSGLLLLLIPQVLLGNT------LYPACLRFAIWVLKKITKREECD 298 (532)
Q Consensus 227 -~~~~~dalF~avSA~~taGfs~~~~sl~~~-~~~~~~~~vi~~lm~lGgi------gf~v~~~~~~~~~~r~~~~~~~~ 298 (532)
..++-+++|+++|++.++|++..|-+..++ +..+..+++.+++|++||. |.=+....+.+...| + +.+
T Consensus 298 ~~~~~~~~~f~~vs~~f~tg~trtgf~~vd~~~~~~~~~~~~~~~MfIGg~~gSTaGGIK~~r~~il~~~~~---~-~l~ 373 (499)
T COG0168 298 FFLSLRDAFFQSVSAIFQTGFTRTGFNTVDLSQWPPATLVLLMLLMFIGGSPGSTAGGIKTTRFAVLLKALK---R-ELR 373 (499)
T ss_pred hHHHHHHHHHhHhHHheecccccCCCcccchhhcChHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHH---H-HHH
Confidence 146788999999888888887664322111 1246789999999999985 222221111111111 0 111
Q ss_pred HHhhccc-----ccccccccchhh---HHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHhhcc-CCcc
Q 045632 299 YLLKNYR-----EIGYDHLLSRSR---SCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNS-RHTG 369 (532)
Q Consensus 299 ~~l~~~r-----~~~~~~l~~s~~---~r~i~~~~~~l~~ig~l~l~~~~~~~~~~~~~~~~~~~~~alFqsvSa-~TaG 369 (532)
. ..+|+ +..-+++ +.++ ...++..++.+.+++.+.+...+ ++ .+.+++||++|| .|.|
T Consensus 374 ~-~~~p~~v~~~k~~~r~i-~~~~i~~~~~~~~l~~~~~~i~~~~l~~~~--------~~---~~~~~lfEv~SA~gtVG 440 (499)
T COG0168 374 R-LGHPNAVISVKIFGRAI-DEDTIRKALAFFFLYLLILIIGALILILTG--------YD---PFIDALFEVVSAFGTVG 440 (499)
T ss_pred H-hcCcccceeeEEcCccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------Cc---cHHHHHHHHHHHhhcCC
Confidence 0 11333 2211222 1222 33344444444444444443221 12 578999999999 9999
Q ss_pred ccCccCCCC------chhHHHHHHHHhhcC
Q 045632 370 ESVLDLSII------SPAILVLFVVMMYLP 393 (532)
Q Consensus 370 Fs~~~~~~~------~~~~~~iliilMfIG 393 (532)
.+....++. ++.+|++++++|++|
T Consensus 441 lSlG~t~~~~~~~~~~~~~K~vli~~M~~G 470 (499)
T COG0168 441 LSLGITGDLASNFALPPLAKLVLIALMLIG 470 (499)
T ss_pred CCCCCCCCCccccccCchHHHHHHHHHHhh
Confidence 999877544 455599999999998
No 12
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=99.70 E-value=7.1e-17 Score=169.04 Aligned_cols=252 Identities=19% Similarity=0.243 Sum_probs=113.1
Q ss_pred CCCcccceeeecccccccCcceee--CCccC--hHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCCcccccccCCCCCCC
Q 045632 70 DPKTFDVFFTSVSAATDSSMGTVE--MEVFS--NSQLIIMTILMLAGGEVFMSMLELFFIKSKLPKHNDHLLITPSSKPT 145 (532)
Q Consensus 70 ~~s~~dAlF~avSa~t~TGls~v~--~~~~~--~~~q~ii~~Li~iGGlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (532)
+.+++||+|+|+||+||+|+++.| +..++ ...|++++++|.+||++|.+...++..+.++.. .++
T Consensus 51 g~~~~~aifhs~Sa~~t~GFs~~~~sl~~f~~~~~i~~i~~~lmi~Gg~~F~~~~~~~~~~~~~~~-~~~---------- 119 (354)
T PF02386_consen 51 GMPLFDAIFHSMSAFSTGGFSPFSDSLAPFNSNPFIEIIIIILMILGGLGFPLYYRILRGRRYRIT-KRE---------- 119 (354)
T ss_dssp T--SHHHHTTTHHHHTT----SSTTGGGSS---TTHHHHHHHHHHHHTS-HHHHHHHTTTST------T-----------
T ss_pred CCcHHHHHHHHHHHHhcCCceecCCceecccccHHHHHHHHHHHHHhcCCHHHHHHHHhccccccc-ccc----------
Confidence 457999999999999999999998 35665 499999999999999999987766544322111 000
Q ss_pred chhhhhhhhcccccccCCCcccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------
Q 045632 146 KSVEQIELNSICCSEKTDHISFDNKNNKNKNNNTILKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPS-------- 217 (532)
Q Consensus 146 ~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iil~~~~~i~~ig~~lL~l~~~~~~~-------- 217 (532)
.. +.. ++ . ..+.. + +.+.+...+.+.......
T Consensus 120 -----~~-------~~~--------------~~--~---~~~~~----~-----~l~~~~~~~~~~~~~~~~~~~~~~~~ 159 (354)
T PF02386_consen 120 -----FS-------LFF--------------KD--H---ERRTF----L-----LLFPGVVLLFLFELWNGLNLVGTIIF 159 (354)
T ss_dssp -----HH-------HHH--------------TS--H---HHHHH----H-----HHHHHHHHHHHHHHHHTT--------
T ss_pred -----cc-------ccc--------------cc--c---cceeE----E-----EeehHHHHHHHHHHhccccccccccc
Confidence 00 000 00 0 10111 1 111111111111111000
Q ss_pred ----hh-hhhhhcCchhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHhccc-----------HHHHH
Q 045632 218 ----AK-HVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTL-----------YPACL 281 (532)
Q Consensus 218 ----~~-~~~~~~~~~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lGgig-----------f~v~~ 281 (532)
.+ ..+++.+.....++.|+.+|+.+||||++.|-+ .+ ++..++++.++|++||.. +.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~f~~~s~~rTtGF~t~d~~--~~--~~~~~~l~~~lM~IGg~~gSTaGGiK~~r~~il~ 235 (354)
T PF02386_consen 160 LILEWNSPTFGGLPFGSKRLSAFFQVSSLRTTGFSTVDIS--QW--SPFTLLLLIILMFIGGSPGSTAGGIKITRFAILL 235 (354)
T ss_dssp -----------SSHHHHHHHHHHHHHHTTTT----S---S--S----THHHHHHHHHTTS-S-TTSS--SS-HHHHHHHH
T ss_pred ccccccccccCCCcHHHHHHHHHHHHhhcCCcccCccChh--hC--CHHHHHHHHHHHHhcCccccccCCcceehhhHHH
Confidence 00 011112224566777888888899999999854 33 356788899999999853 22222
Q ss_pred HHHHHHHHhhhhhhhhHHHhhcccccccccccchhhH---HHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHH
Q 045632 282 RFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRS---CFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVAS 358 (532)
Q Consensus 282 ~~~~~~~~r~~~~~~~~~~l~~~r~~~~~~l~~s~~~---r~i~~~~~~l~~ig~l~l~~~~~~~~~~~~~~~~~~~~~a 358 (532)
+.. +-..|...+++.....-+.|++ ++... ..++..++++.++++..+...+ .+. . +.++
T Consensus 236 ~~~-~~~~~~~~p~~~~~~~~~~r~i------~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~-~-~~~~ 298 (354)
T PF02386_consen 236 KSI-REIKRLIHPGAVSPVRFNGRRI------SEQTVRKAFAFFFLYFIIVFISTLLLSLDG--------LDF-S-FFDA 298 (354)
T ss_dssp HHH-HHHHHHH-SSS-----SSS---------TTSHHHHHCCHHHHHHHHHHHHHHHHHHHS--------S-H----HHH
T ss_pred hhH-HHHHHHhcCCCccceeecceee------chhhhhhHHHHHHHHHHHHHHHHHHHHhcc--------cch-H-HHHH
Confidence 211 1101110010000000011211 12222 2233333333444444433221 111 2 6889
Q ss_pred HHHhhcc-CCccccCcc-CCCCchh---HHHHHHHHhhcC
Q 045632 359 LFEVVNS-RHTGESVLD-LSIISPA---ILVLFVVMMYLP 393 (532)
Q Consensus 359 lFqsvSa-~TaGFs~~~-~~~~~~~---~~~iliilMfIG 393 (532)
+|+++|| .|.|.+... .+++++. .|++++++|++|
T Consensus 299 lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~G 338 (354)
T PF02386_consen 299 LFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLG 338 (354)
T ss_dssp HHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHh
Confidence 9999999 999999987 5666655 999999999998
No 13
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=99.09 E-value=1.7e-09 Score=116.88 Aligned_cols=221 Identities=13% Similarity=0.175 Sum_probs=128.1
Q ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCCcccccccCCCCCCCchhhhhhhhcccccccCCCccccccccccccc
Q 045632 98 SNSQLIIMTILMLAGGEVFMSMLELFFIKSKLPKHNDHLLITPSSKPTKSVEQIELNSICCSEKTDHISFDNKNNKNKNN 177 (532)
Q Consensus 98 ~~~~q~ii~~Li~iGGlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~ 177 (532)
+.+.+++.+++|.+||+|++++......+ ++
T Consensus 249 ~plvNlv~~~LIilgglGf~v~~g~~~~~----~r--------------------------------------------- 279 (559)
T PRK05482 249 TPLSNLVEMLAILLIPAALVFTFGRMVGD----RR--------------------------------------------- 279 (559)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhcC----cC---------------------------------------------
Confidence 56999999999999999999988764321 10
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhh-----hhhhcC--chhHHHHHHHHhhcccCcc-ccc
Q 045632 178 NTILKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISL-IPSAKH-----VLEQKG--LQAETFSLFTIVSTFSNCG-FVP 248 (532)
Q Consensus 178 ~~~~~~~~~~~~~~iil~~~~~i~~ig~~lL~l~~~~-~~~~~~-----~~~~~~--~~~~~dalF~avSA~~taG-fs~ 248 (532)
+.|+++...+++.++|+++.+..++. +|.... .++++. ......|+|+|+++.+++| |++
T Consensus 280 -----------h~kivl~~~~iL~i~g~~~~~~~E~~~np~l~~l~~~gn~egKE~RfG~~~salF~svTtrtTaG~fNs 348 (559)
T PRK05482 280 -----------QGWAILAAMLVLFLAGLAVTMWAELQGNPALAALGIDGNMEGKEVRFGIAASALFAVVTTAASTGAVNA 348 (559)
T ss_pred -----------ceehhHHHHHHHHHHHHHHHHHHHccCCcchhhccCCCCcccchhhhhhHHHHHHHHHHhhhhcchHHH
Confidence 13456667777888888887766654 221110 011110 0237899999999986777 988
Q ss_pred cCCCccccccChhHHHHHHHHHHHhc-c------cHHHHHHHHHHHH--HhhhhhhhhHHHhhcccccccccccchhhHH
Q 045632 249 TNENMIVFKENSGLLLLLIPQVLLGN-T------LYPACLRFAIWVL--KKITKREECDYLLKNYREIGYDHLLSRSRSC 319 (532)
Q Consensus 249 ~~~sl~~~~~~~~~~~vi~~lm~lGg-i------gf~v~~~~~~~~~--~r~~~~~~~~~~l~~~r~~~~~~l~~s~~~r 319 (532)
.-+| + ++...++.+++|++|+ . |.-.+..+.+..+ ....++++.++ ..||+ +.++.|
T Consensus 349 m~ds---l--tp~~~lv~m~lMfIG~~~pGGtGgGl~~~~tfaIL~vfi~glmvGrtpe~---~gRkI------~~~eik 414 (559)
T PRK05482 349 MHDS---L--TPLGGLVPLLNMQLGEVIFGGVGSGLYGMLVFVILAVFIAGLMVGRTPEY---LGKKI------EAREMK 414 (559)
T ss_pred HHHh---h--ccHHHHHHHHHHHhCCCCCccchHhHHHHHHHHHHHHHHHhHccCCCCeE---Ecccc------CHHHHH
Confidence 7554 3 3567888999999983 2 2222111111111 11111122221 11222 123333
Q ss_pred H---HHHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHhhcc-CCccccCccCCCCchhHHHHHHHHhhcC
Q 045632 320 F---LAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNS-RHTGESVLDLSIISPAILVLFVVMMYLP 393 (532)
Q Consensus 320 ~---i~~~~~~l~~ig~l~l~~~~~~~~~~~~~~~~~~~~~alFqsvSa-~TaGFs~~~~~~~~~~~~~iliilMfIG 393 (532)
. ++.+...++++++.+....+...+.+.+ +-...+.+.+||.+|| .|.|.+..+...-++..+++++++||+|
T Consensus 415 ~A~~vilv~~~lVl~~taial~~~~~~~~~~n-~g~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iG 491 (559)
T PRK05482 415 LAALAILVHPLLVLVGTALALATPAGRAGISN-PGPHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLG 491 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccC-CCCCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 3 2233333444444222222321101111 0012567889999999 9999999765555999999999999998
No 14
>KOG1341 consensus Na+/K+ transporter [Inorganic ion transport and metabolism]
Probab=98.52 E-value=4e-07 Score=97.43 Aligned_cols=195 Identities=19% Similarity=0.169 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCC--------CCCC-CcccceeeecccccccCcceee--CCcc--ChHHHHHHHHH
Q 045632 42 MLHLCYFTALSLLGYFLLSVTKPRTH--------STDP-KTFDVFFTSVSAATDSSMGTVE--MEVF--SNSQLIIMTIL 108 (532)
Q Consensus 42 ~l~~~~~~~i~liGalll~l~~~~~~--------~~~~-s~~dAlF~avSa~t~TGls~v~--~~~~--~~~~q~ii~~L 108 (532)
-+++.||+..=++|.+.+.. ..... +.++ .-+-|+|+|+|+|.+.|++..+ +-.+ +.+-+++.+..
T Consensus 465 sil~vY~l~~nIvafV~llv-~i~t~k~~~eVv~~~gisp~ww~~FTs~S~F~nlGfslt~~smvsF~kai~plil~~~f 543 (854)
T KOG1341|consen 465 SILVVYFLGWNIVAFVTLLV-FIYTAKTSREVVRSKGISPGWWAFFTSMSAFNNLGFSLTPDSMVSFNKAIFPLILMIPF 543 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhcchhhhhhcccCCCCcchhhhhhHHHHHhccCcccCcccccccccchhHHHHHHHH
Confidence 45567888877888877653 22211 1223 4678999999999999999876 2233 46888889999
Q ss_pred HHHhhhHHHHHHHHHHHhccCCCcccccccCCCCCCCchhhhhhhhcccccccCCCcccccccccccccccccccchhHH
Q 045632 109 MLAGGEVFMSMLELFFIKSKLPKHNDHLLITPSSKPTKSVEQIELNSICCSEKTDHISFDNKNNKNKNNNTILKHNSIRY 188 (532)
Q Consensus 109 i~iGGlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (532)
|++|--||.-+...++...-+-.+... +. + |+..- . .+|+...-.+- .+ +.
T Consensus 544 Ii~GNTgFPi~Lr~iIWimyKit~~~~--------------~~------~-Eal~f---L--ldHpRrcfTlL-fp--s~ 594 (854)
T KOG1341|consen 544 IIIGNTGFPIFLRFIIWIMYKITRFSS--------------QF------K-EALYF---L--LDHPRRCFTLL-FP--SG 594 (854)
T ss_pred HHHcCCCchHHHHHHHHHhhhcccchh--------------hH------H-HhhhH---H--hcCCcceeEEE-ec--Cc
Confidence 999999999887766543221111100 00 0 11100 0 00000000000 01 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcC-chhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHH
Q 045632 189 LCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKG-LQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLI 267 (532)
Q Consensus 189 ~~~iil~~~~~i~~ig~~lL~l~~~~~~~~~~~~~~~~-~~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~ 267 (532)
..+.++...+.+.++-.++++..... ....++.. ......|+|+++++ .+|||+.+|-| . -.|.+++.-|
T Consensus 595 ~tw~Lf~tl~~lni~d~ilF~vlD~g----S~~v~~lskgyRvv~~lFQsV~T-RtaGftvVDLS--q--LhPaIlVsym 665 (854)
T KOG1341|consen 595 ATWVLFLTLLGLNIIDLILFMVLDFG----SEVVESLSKGYRVVNALFQSVCT-RTAGFTVVDLS--Q--LHPAILVSYM 665 (854)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhcc----hHHHHhchhHHHHHHHHHHHhhc-cccCceEeEhH--H--hChHHHHHHH
Confidence 13344444444555544443332221 11223322 25788999999999 59999999976 2 3578899999
Q ss_pred HHHHHhcc
Q 045632 268 PQVLLGNT 275 (532)
Q Consensus 268 ~lm~lGgi 275 (532)
++|-+.-.
T Consensus 666 lMMYisvy 673 (854)
T KOG1341|consen 666 LMMYISVY 673 (854)
T ss_pred HHHhcccc
Confidence 99988753
No 15
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=97.11 E-value=0.62 Score=50.99 Aligned_cols=347 Identities=15% Similarity=0.075 Sum_probs=177.9
Q ss_pred CCCcccceeeecccccccCcceeeCC-ccChHHHHH-HHHHHHHhhh-HHHHHHHHHHHhccCCCcccccccCCCCCCCc
Q 045632 70 DPKTFDVFFTSVSAATDSSMGTVEME-VFSNSQLII-MTILMLAGGE-VFMSMLELFFIKSKLPKHNDHLLITPSSKPTK 146 (532)
Q Consensus 70 ~~s~~dAlF~avSa~t~TGls~v~~~-~~~~~~q~i-i~~Li~iGGl-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (532)
+.++--|+=+|+|=+|||-.+-+.-| .++.+.|.. +.+++.+-.. |+.+.. .+.|...+++.
T Consensus 92 ~~s~dlAfNTAiSFvTNTNwQ~YsGEstlSylsQm~gLtvqnFvSAAtGiAv~~-AliRg~~~~~~-------------- 156 (552)
T PF03814_consen 92 GMSPDLAFNTAISFVTNTNWQHYSGESTLSYLSQMAGLTVQNFVSAATGIAVAI-ALIRGFARKET-------------- 156 (552)
T ss_pred CCCcchhhhhhhhhhccCcccccCCcchHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhccC--------------
Confidence 45676778889999999999988764 577766665 6666666654 665544 33343222210
Q ss_pred hhhhhhhhcccccccCCCcccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hh-----h
Q 045632 147 SVEQIELNSICCSEKTDHISFDNKNNKNKNNNTILKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPS-AK-----H 220 (532)
Q Consensus 147 ~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iil~~~~~i~~ig~~lL~l~~~~~~~-~~-----~ 220 (532)
+++. +--.++.|.++.+.+=+-++.+++|. ....+. .+ .
T Consensus 157 -------------------------------~~iG--NFwvDl~R~~l~vLLPlS~v~AliLv--~qGVpQtf~~~~~v~ 201 (552)
T PF03814_consen 157 -------------------------------KTIG--NFWVDLVRSTLRVLLPLSFVFALILV--SQGVPQTFSGYVTVT 201 (552)
T ss_pred -------------------------------CCCC--chHHHHHHHHHHHHHHHHHHHHHHHH--hcCccccccCCceee
Confidence 0001 11123344444444445555666543 222221 00 0
Q ss_pred hhhh------cCchhHHHHHHHHhhcccCccccccCCCcccccc-ChhHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhh
Q 045632 221 VLEQ------KGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKE-NSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKITK 293 (532)
Q Consensus 221 ~~~~------~~~~~~~dalF~avSA~~taGfs~~~~sl~~~~~-~~~~~~vi~~lm~lGgigf~v~~~~~~~~~~r~~~ 293 (532)
.+++ .++..-..|+=| =.-|.+||=.-+ |-.+|.+ +++..++=++.|++=..+ +.+ ..+|.
T Consensus 202 tleg~~Q~i~~GPvAs~eaIK~--LGTNGGGff~aN-SAhPfENPt~~sN~~e~~~illIP~a--l~~-----~fG~~-- 269 (552)
T PF03814_consen 202 TLEGATQTIPLGPVASQEAIKQ--LGTNGGGFFGAN-SAHPFENPTPLSNFLEMLSILLIPAA--LPF-----TFGRM-- 269 (552)
T ss_pred eeccceeeeccCccHHHHHHHH--hccCCCcccCCC-CCCCCCCChHHHHHHHHHHHHHHHHH--HHH-----HHHHH--
Confidence 1111 112222333332 233788885444 3345532 345555555555543222 221 11221
Q ss_pred hhhhHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCc-cccCCC------CH---H---HHHHHHHH
Q 045632 294 REECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNS-EAMDDL------NF---Y---QKLVASLF 360 (532)
Q Consensus 294 ~~~~~~~l~~~r~~~~~~l~~s~~~r~i~~~~~~l~~ig~l~l~~~~~~~-~~~~~~------~~---~---~~~~~alF 360 (532)
.+++ +|-+.++.+..++.+++..+....|... +.++.. +. + -..-.++|
T Consensus 270 -------~~~~-----------rqg~~i~~~m~~lf~~~~~~~~~~E~~gnp~~~~~g~~~~gnmEGKE~RFG~~~Salf 331 (552)
T PF03814_consen 270 -------VGDR-----------RQGWAIFAVMLVLFIVGLALAYWAESAGNPALAALGIDQGGNMEGKEVRFGIAGSALF 331 (552)
T ss_pred -------HcCc-----------cchHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHhccccCCCCccchheechhhhHHH
Confidence 1111 3555555555555555544444445432 211111 00 0 11345788
Q ss_pred Hhhcc-CCccccCccCCCCchhHHHHHHHHhhcC----C-cce------EE--------eccccccCCCCCcccccccch
Q 045632 361 EVVNS-RHTGESVLDLSIISPAILVLFVVMMYLP----P-YTS------FL--------PARNCDEGDSKNCREKEKETK 420 (532)
Q Consensus 361 qsvSa-~TaGFs~~~~~~~~~~~~~iliilMfIG----g-stt------~~--------~~r~~~~~~~~~~~~~~~~~~ 420 (532)
.++++ .++|=...-.++++|..-.+.++.|.+| | ... +. .+-+|.- .+.+||++.+
T Consensus 332 ~~~TT~ts~GaVN~mhDS~~PlgG~~~l~~M~L~evfGGvG~Gl~~ml~~~il~VFiaGLMVGRTP----EyLGKKIe~~ 407 (552)
T PF03814_consen 332 AVVTTATSTGAVNSMHDSLTPLGGMVPLFNMMLGEVFGGVGSGLYGMLMYVILTVFIAGLMVGRTP----EYLGKKIEAR 407 (552)
T ss_pred HHHHHHhcccccccccccCCchhHHHHHHHHHhCCcCCCcchhHHHHHHHHHHHHHHHhHhcCCCh----HHhcCccchh
Confidence 88888 7888766667889999999999999885 2 111 11 1223211 1367888877
Q ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHccCC-CCCCCCCccHHHHHHHHhcccCccccCCCccCccccCccccccCccccc
Q 045632 421 SLLECLAFSQLS--YLAIFIILICITERHK-MKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGL 497 (532)
Q Consensus 421 ~i~~~~~~~~l~--~~~i~~~~i~~~e~~~-~~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~ 497 (532)
+++-+.+....- ++++...+-+...... ...++....+.+++.|-.||-+|=|=..+-
T Consensus 408 Emk~~~l~iL~~P~liL~~taia~~~p~~~~~~~NpG~HG~SevLYaftSaaaNNGSaF~G------------------- 468 (552)
T PF03814_consen 408 EMKLAALAILVHPLLILVGTAIAVATPAGLASISNPGPHGFSEVLYAFTSAAANNGSAFAG------------------- 468 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCCCcccHHHHHHHHhhccccCcccccc-------------------
Confidence 776555433221 2222222222222211 112333467889999999999999876631
Q ss_pred cccCChHHHHHHHHHHHhcCCC
Q 045632 498 VGKWSNGGKLILILVMFFGRIK 519 (532)
Q Consensus 498 ~~~l~~~~Klili~lM~iGRl~ 519 (532)
-++=+++--+..-+.|++||--
T Consensus 469 L~~nt~f~N~~~g~~MllgRf~ 490 (552)
T PF03814_consen 469 LNANTPFWNITTGIAMLLGRFL 490 (552)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 1123345567788899999943
No 16
>TIGR00680 kdpA K+-transporting ATPase, KdpA. Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit PubMed:9858692].
Probab=97.05 E-value=0.69 Score=50.49 Aligned_cols=180 Identities=14% Similarity=0.077 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC-ccccCCC------CHH------HHHHHHHHHhhcc-CCccccCccCCCCchhH
Q 045632 317 RSCFLAITVFGFIIVQLVIFCSLEWN-SEAMDDL------NFY------QKLVASLFEVVNS-RHTGESVLDLSIISPAI 382 (532)
Q Consensus 317 ~~r~i~~~~~~l~~ig~l~l~~~~~~-~~~~~~~------~~~------~~~~~alFqsvSa-~TaGFs~~~~~~~~~~~ 382 (532)
|.+.++....++.+++..+.+..|.. ++.+... +.. -....++|.++++ .++|=...-.++++|..
T Consensus 283 qg~~i~~~m~~lf~~~~~~~~~~E~~gnp~l~~~g~~~~gnmEGKE~RFG~~~Salfa~~TT~tS~GaVN~mhDS~tPlg 362 (563)
T TIGR00680 283 QGWLILWMMFIIYGILIAIAMVGEFQGNPLLNALGGESQPNLEGKEVRFGVVLSALWAVSTTGTSCGAVNGMHDSLTPLG 362 (563)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhccccccCCCcceeeeecchhhHHHHHHHHhhcccchhhhhhccCchh
Confidence 55555555555555555444445643 3322111 110 1244678888888 78886666677888888
Q ss_pred HHHHHHHhhcC-----C-cce------EE--------eccccccCCCCCcccccccchhHHHHHHHHHHH--HHHHHHHH
Q 045632 383 LVLFVVMMYLP-----P-YTS------FL--------PARNCDEGDSKNCREKEKETKSLLECLAFSQLS--YLAIFIIL 440 (532)
Q Consensus 383 ~~iliilMfIG-----g-stt------~~--------~~r~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~--~~~i~~~~ 440 (532)
-.+.++.|.+| | ... +. .+-+|.- .+.+||++.++++-+.+....- ++++...+
T Consensus 363 G~v~l~~M~LGevifGGvG~Gl~~ml~~~ilaVFiaGLMVGRTP----EyLGKKIe~~EmK~a~l~iLv~P~lvL~~tai 438 (563)
T TIGR00680 363 GMVPLSDMFLGEVIWGGQGTGLAGLFVFLILAVFIAGLMVGRTP----EYLGKKIEKREMKLASLIILIHPIAILIPAAI 438 (563)
T ss_pred hHHHHHHHHHhCcCcCCcchhHHHHHHHHHHHHHhccccccCCc----hhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888774 3 111 11 1223211 1367888877776554433221 22222222
Q ss_pred HHHHccCC-CCCCCCCccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhcCCC
Q 045632 441 ICITERHK-MKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIK 519 (532)
Q Consensus 441 i~~~e~~~-~~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iGRl~ 519 (532)
-....... ...++....+.+.+.|-.||-+|=|=..+- -+.=+++=-+..-+.|++||--
T Consensus 439 a~~~p~~~~~~~NpGpHG~SevLYaftSaa~NNGSaF~G-------------------L~~nT~f~N~~~g~~MllGRf~ 499 (563)
T TIGR00680 439 TLAFPDTLAGISNPGPHGISEVLYAYASAANNNGSAFAG-------------------LAANTLWWNLSASFSMIAGRFV 499 (563)
T ss_pred HHhccchhhhcCCCCCchHHHHHHHHHhccccCcccccC-------------------CCCCCHHHHHHHHHHHHHHHHH
Confidence 12222111 111222468899999999999999976631 1133455567788999999943
No 17
>COG2060 KdpA K+-transporting ATPase, A chain [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.64 Score=50.06 Aligned_cols=142 Identities=16% Similarity=0.097 Sum_probs=79.1
Q ss_pred HHHHHHHhhcc-CCccccCccCCCCchhHHHHHHHHhhcC----C-cce------EE--------eccccccCCCCCccc
Q 045632 355 LVASLFEVVNS-RHTGESVLDLSIISPAILVLFVVMMYLP----P-YTS------FL--------PARNCDEGDSKNCRE 414 (532)
Q Consensus 355 ~~~alFqsvSa-~TaGFs~~~~~~~~~~~~~iliilMfIG----g-stt------~~--------~~r~~~~~~~~~~~~ 414 (532)
...++|-++++ .++|=...--++++|..-++-++.|.+| | .+. ++ .+-+|.- .+.+
T Consensus 333 ~~SaLfav~TTa~s~GaVN~MHdS~tplGg~vpl~~m~L~~v~GGvG~Gl~~ml~fviltVFiagLMVGRTP----EyLg 408 (560)
T COG2060 333 AASALFAVSTTAASCGAVNAMHDSLTPLGGMVPLFLMQLGEVFGGVGSGLYGMLLFVILTVFIAGLMVGRTP----EYLG 408 (560)
T ss_pred hHHHHHHHHHhhhcccchhhhhccccccccHHHHHHHHhCCCcCCcchhHHHHHHHHHHHHHHHHHhcCCCH----HHhc
Confidence 34578877766 6777555556688888888888888774 3 221 11 1123211 1357
Q ss_pred ccccchhHHHHHHHHHHH-HHHHHHHHHHHHccC--CCCCCCCCccHHHHHHHHhcccCccccCCCccCccccCcccccc
Q 045632 415 KEKETKSLLECLAFSQLS-YLAIFIILICITERH--KMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCK 491 (532)
Q Consensus 415 ~~~~~~~i~~~~~~~~l~-~~~i~~~~i~~~e~~--~~~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~ 491 (532)
||++.++++-..+....- ++++....+.+..++ ....+|....+.+.+.|-.||-+|=|=..+--
T Consensus 409 kKIe~kEmk~~~L~iLv~PllvL~~~Aia~~~p~~~a~i~Npg~HG~SevLYa~tSaaaNNGS~F~Gl------------ 476 (560)
T COG2060 409 KKIEAKEMKLAALAILVHPLLVLIFTAIALMLPGALASISNPGPHGFSEVLYAYTSAAANNGSAFAGL------------ 476 (560)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHCchHHhhCCCCCCccHHHHHHHHHhhcccCccccccc------------
Confidence 777776665444322111 111111112211111 11123334678899999999998988666310
Q ss_pred CccccccccCChHHHHHHHHHHHhcCCC
Q 045632 492 DKWFGLVGKWSNGGKLILILVMFFGRIK 519 (532)
Q Consensus 492 ~~~~s~~~~l~~~~Klili~lM~iGRl~ 519 (532)
++=+++-.+..-+.|++||--
T Consensus 477 -------~~nt~f~N~~~g~~MllGRy~ 497 (560)
T COG2060 477 -------SANTPFWNLTLGVAMLLGRFL 497 (560)
T ss_pred -------cCCCchHhHHHHHHHHHHhHH
Confidence 122345556788999999944
No 18
>TIGR00680 kdpA K+-transporting ATPase, KdpA. Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit PubMed:9858692].
Probab=85.50 E-value=26 Score=38.72 Aligned_cols=38 Identities=5% Similarity=0.009 Sum_probs=28.2
Q ss_pred ccceeeecccccccCcceeeCCccChHHHHHHHHHHHH
Q 045632 74 FDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLA 111 (532)
Q Consensus 74 ~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~i 111 (532)
--|+|.++..-+.||..---.|++++.+-.+-++.|++
T Consensus 335 ~Salfa~~TT~tS~GaVN~mhDS~tPlgG~v~l~~M~L 372 (563)
T TIGR00680 335 LSALWAVSTTGTSCGAVNGMHDSLTPLGGMVPLSDMFL 372 (563)
T ss_pred hhHHHHHHHHhhcccchhhhhhccCchhhHHHHHHHHH
Confidence 45789999988999965322488888776777777777
No 19
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=76.41 E-value=1e+02 Score=34.21 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=30.3
Q ss_pred ccceeeecccccccCcceeeCCccChHHHHHHHHHHHHh
Q 045632 74 FDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAG 112 (532)
Q Consensus 74 ~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iG 112 (532)
--|+|.++..-+.||..---.|++++.+-.+-++.|++|
T Consensus 327 ~Salf~~~TT~ts~GaVN~mhDS~~PlgG~~~l~~M~L~ 365 (552)
T PF03814_consen 327 GSALFAVVTTATSTGAVNSMHDSLTPLGGMVPLFNMMLG 365 (552)
T ss_pred hhHHHHHHHHHhcccccccccccCCchhHHHHHHHHHhC
Confidence 357999999999999754334889887777888888875
No 20
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=69.90 E-value=18 Score=28.97 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=29.9
Q ss_pred ccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhc
Q 045632 456 FNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFG 516 (532)
Q Consensus 456 ~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iG 516 (532)
.++.++++=++..+.|+|+ |+. .|. ++.+|++.++.|+.|
T Consensus 23 ~~~~da~yfs~~t~tTvGy--GDi------------------~p~-t~~gr~~~~~~~~~G 62 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGY--GDI------------------VPQ-TPAGRIFTIIYMLIG 62 (79)
T ss_dssp TSHHHHHHHHHHHHTT-----SSS------------------STS-SHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccC--CCc------------------cCC-ccchHHHHHHHHHHH
Confidence 6789999999888899995 431 335 788999999999887
No 21
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=60.54 E-value=29 Score=27.62 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhh
Q 045632 51 LSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGE 114 (532)
Q Consensus 51 i~liGalll~l~~~~~~~~~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGl 114 (532)
+...|++.+.. . +...+.++.||++-++..+||.|.. |...-+..++++..+.+..|=.
T Consensus 6 ~l~~~~~~~~~-~--~~~~~~~~~da~yfs~~t~tTvGyG--Di~p~t~~gr~~~~~~~~~G~~ 64 (79)
T PF07885_consen 6 VLAFGAIFFYI-S--EGSEKWSFIDALYFSFVTITTVGYG--DIVPQTPAGRIFTIIYMLIGIF 64 (79)
T ss_dssp HHHHHHHHHHH-T--TSSSTTSHHHHHHHHHHHHTT---S--SSSTSSHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHH-H--HhcccCCHHHHHHHHHHHHhcccCC--CccCCccchHHHHHHHHHHHHH
Confidence 33556666664 1 1123568999999999999999976 3322367777777555555433
No 22
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=39.57 E-value=79 Score=37.18 Aligned_cols=46 Identities=9% Similarity=0.322 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHhhcc-CCccccCccCCCCchhHHHHHHHHhhcCC
Q 045632 347 DDLNFYQKLVASLFEVVNS-RHTGESVLDLSIISPAILVLFVVMMYLPP 394 (532)
Q Consensus 347 ~~~~~~~~~~~alFqsvSa-~TaGFs~~~~~~~~~~~~~iliilMfIGg 394 (532)
.+.+++++...|++-++.+ +|.|| .|+...+..-.++.+++|++|.
T Consensus 243 ~~~s~~~~Yi~slYwai~TmtTVGY--GDi~p~t~~E~i~~i~~ml~g~ 289 (823)
T PLN03192 243 RETSLWIRYISAIYWSITTMTTVGY--GDLHAVNTIEMIFIIFYMLFNL 289 (823)
T ss_pred ccCcHHHHHHHHHHHHHHHHhhccC--CCcCCCccchHHHHHHHHHHHH
Confidence 3457788888999999998 89998 4556666667777888888764
No 23
>COG2060 KdpA K+-transporting ATPase, A chain [Inorganic ion transport and metabolism]
Probab=32.48 E-value=7.3e+02 Score=27.53 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=24.7
Q ss_pred cceeeecccccccCcceeeCCccChHHHHHHHHHHHHh
Q 045632 75 DVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAG 112 (532)
Q Consensus 75 dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iG 112 (532)
.|+|..+-.-++||..---.+++.+.+-.+-+++||+|
T Consensus 335 SaLfav~TTa~s~GaVN~MHdS~tplGg~vpl~~m~L~ 372 (560)
T COG2060 335 SALFAVSTTAASCGAVNAMHDSLTPLGGMVPLFLMQLG 372 (560)
T ss_pred HHHHHHHHhhhcccchhhhhccccccccHHHHHHHHhC
Confidence 56777665556666432113788887777788888865
No 24
>PRK10537 voltage-gated potassium channel; Provisional
Probab=32.20 E-value=2.6e+02 Score=29.88 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=28.8
Q ss_pred CCCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhH
Q 045632 70 DPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEV 115 (532)
Q Consensus 70 ~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG 115 (532)
..++.||++.++-..||.|.. |....+..+.++-++++. .|++
T Consensus 166 ~~s~~dA~y~svvt~tTvGyG--di~p~t~~grl~~i~~ii-~Gi~ 208 (393)
T PRK10537 166 IESLSTAFYFSIVTMSTVGYG--DIVPVSESARLFTISVII-LGIT 208 (393)
T ss_pred CCCHHHHHHhhheeeecccCC--CCCCCCHHHHHHHHHHHH-HHHH
Confidence 358999999999888888864 332335556666655554 4444
No 25
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=30.47 E-value=49 Score=34.64 Aligned_cols=57 Identities=21% Similarity=0.136 Sum_probs=33.5
Q ss_pred CCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Q 045632 71 PKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSMLELFFIKS 127 (532)
Q Consensus 71 ~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG~~~~~~~~~~~~ 127 (532)
.+|.+|+|-|+...||-|--.-.+..-.....++..+-..+|=+....+..++.-|.
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~ 139 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARF 139 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999765333233345555554444455555555555555443
No 26
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=29.19 E-value=43 Score=27.11 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=19.9
Q ss_pred cccCChHHHHHHHHHHHhcCCCCCc
Q 045632 498 VGKWSNGGKLILILVMFFGRIKKFN 522 (532)
Q Consensus 498 ~~~l~~~~Klili~lM~iGRl~~~~ 522 (532)
...+++--+.=+..+||+|| +-+.
T Consensus 10 I~~l~~deqaeLvALmwiGR-Gd~~ 33 (75)
T PF12616_consen 10 IEDLNEDEQAELVALMWIGR-GDFE 33 (75)
T ss_pred HHhCCHHHHHHHHHHHHhcC-CCCC
Confidence 45788889999999999999 6543
No 27
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=22.04 E-value=5.5e+02 Score=26.86 Aligned_cols=50 Identities=20% Similarity=0.111 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHhcccHHHHH
Q 045632 228 QAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACL 281 (532)
Q Consensus 228 ~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lGgigf~v~~ 281 (532)
.++.+|++.|+.+.+|-|+.... + ....+...+++++-+++|-+..+++.
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~--~--~~~c~~a~~l~~~q~~~g~l~~a~~~ 132 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRY--P--TPECPYAIFLVTIQSLVGLLLDAFMT 132 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSE--B---CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcc--c--CCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999986531 1 11234556666677777766555544
No 28
>PRK10537 voltage-gated potassium channel; Provisional
Probab=20.05 E-value=3.9e+02 Score=28.59 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=30.5
Q ss_pred ccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhc
Q 045632 456 FNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFG 516 (532)
Q Consensus 456 ~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iG 516 (532)
.++.++++-++-.++|+|+ |+. ...++.+|++.+.+|+.|
T Consensus 167 ~s~~dA~y~svvt~tTvGy--Gdi-------------------~p~t~~grl~~i~~ii~G 206 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGY--GDI-------------------VPVSESARLFTISVIILG 206 (393)
T ss_pred CCHHHHHHhhheeeecccC--CCC-------------------CCCCHHHHHHHHHHHHHH
Confidence 5789999988888899997 331 135677899888888766
Done!