Query 045632
Match_columns 532
No_of_seqs 209 out of 1608
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 06:22:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pjz_A Potassium uptake protei 100.0 1.6E-58 5.4E-63 496.1 29.2 384 42-530 71-484 (494)
2 3pjz_A Potassium uptake protei 99.8 7.7E-21 2.6E-25 204.0 16.3 276 191-527 71-356 (494)
3 3ukm_A Potassium channel subfa 92.7 0.32 1.1E-05 48.0 8.5 138 354-516 93-246 (280)
4 3ukm_A Potassium channel subfa 90.7 2.1 7.3E-05 42.1 12.0 41 228-274 92-132 (280)
5 2q67_A Potassium channel prote 89.5 1.2 4E-05 37.7 7.9 83 27-118 10-92 (114)
6 3um7_A Potassium channel subfa 88.0 0.95 3.3E-05 45.3 7.2 135 355-516 116-268 (309)
7 3vou_A ION transport 2 domain 87.2 2 6.9E-05 37.8 8.2 80 26-113 12-91 (148)
8 3um7_A Potassium channel subfa 86.2 9.2 0.00031 38.1 13.3 39 229-273 115-153 (309)
9 3ouf_A Potassium channel prote 84.5 4 0.00014 33.2 8.2 40 456-516 31-70 (97)
10 2k1e_A Water soluble analogue 84.4 1.4 4.8E-05 36.4 5.4 74 45-121 12-86 (103)
11 3ldc_A Calcium-gated potassium 81.0 6.5 0.00022 30.8 7.9 53 434-516 14-66 (82)
12 3ouf_A Potassium channel prote 81.0 2.9 9.9E-05 34.1 6.0 70 39-117 5-74 (97)
13 3eff_K Voltage-gated potassium 80.4 4.1 0.00014 35.3 7.2 78 43-123 10-88 (139)
14 3eff_K Voltage-gated potassium 80.3 5.7 0.0002 34.3 8.1 58 436-516 21-78 (139)
15 2ih3_C Voltage-gated potassium 79.7 8.9 0.00031 32.5 8.9 58 437-517 43-100 (122)
16 3ldc_A Calcium-gated potassium 79.4 3 0.0001 32.8 5.4 66 43-117 5-70 (82)
17 2q67_A Potassium channel prote 78.5 7.5 0.00026 32.6 8.0 41 456-517 48-88 (114)
18 1p7b_A Integral membrane chann 77.4 7.4 0.00025 39.2 8.8 95 24-121 47-142 (333)
19 2a9h_A Voltage-gated potassium 76.9 11 0.00038 33.4 9.0 60 435-517 64-123 (155)
20 2ih3_C Voltage-gated potassium 76.2 26 0.00089 29.5 10.8 42 228-275 60-101 (122)
21 2a9h_A Voltage-gated potassium 75.0 23 0.00078 31.3 10.5 45 228-278 83-127 (155)
22 3vou_A ION transport 2 domain 74.8 9.7 0.00033 33.3 8.0 40 456-516 51-90 (148)
23 2k1e_A Water soluble analogue 72.9 5.5 0.00019 32.7 5.5 61 434-517 19-79 (103)
24 4h33_A LMO2059 protein; bilaye 72.6 11 0.00036 32.7 7.5 41 456-517 42-82 (137)
25 4h33_A LMO2059 protein; bilaye 71.1 7.1 0.00024 33.9 6.0 51 70-123 41-91 (137)
26 3sya_A G protein-activated inw 61.5 11 0.00037 38.1 5.9 110 5-119 14-137 (340)
27 1xl4_A Inward rectifier potass 60.5 7.7 0.00026 38.5 4.6 74 46-122 55-129 (301)
28 3spc_A Inward-rectifier K+ cha 55.2 8.7 0.0003 38.8 4.0 48 71-119 93-140 (343)
29 1orq_C Potassium channel; volt 48.1 56 0.0019 30.0 8.3 41 456-517 164-204 (223)
30 3spc_A Inward-rectifier K+ cha 43.2 1.4E+02 0.0046 30.0 10.6 49 228-280 93-141 (343)
31 3sya_A G protein-activated inw 42.8 1.2E+02 0.0041 30.4 10.1 49 228-280 90-138 (340)
32 1orq_C Potassium channel; volt 39.5 54 0.0018 30.1 6.6 68 49-119 141-209 (223)
33 4gx0_A TRKA domain protein; me 35.3 60 0.002 34.5 7.0 40 349-394 50-90 (565)
34 3beh_A MLL3241 protein; transm 35.0 48 0.0016 32.9 5.8 39 354-394 161-200 (355)
35 2qks_A KIR3.1-prokaryotic KIR 34.8 1.4E+02 0.0046 29.6 9.0 40 457-517 78-117 (321)
36 2qks_A KIR3.1-prokaryotic KIR 33.6 1E+02 0.0035 30.5 7.9 49 71-122 77-125 (321)
37 4gx0_A TRKA domain protein; me 33.3 18 0.00061 38.7 2.4 44 70-116 49-92 (565)
38 1xl4_A Inward rectifier potass 30.1 1.4E+02 0.0049 29.2 8.2 41 456-517 81-121 (301)
39 3pjs_K KCSA, voltage-gated pot 28.0 2.2 7.6E-05 38.4 -5.1 67 50-119 44-111 (166)
40 3beh_A MLL3241 protein; transm 27.1 2.5E+02 0.0085 27.5 9.6 41 228-274 160-200 (355)
41 1p7b_A Integral membrane chann 25.6 1.4E+02 0.0049 29.7 7.3 41 456-517 95-135 (333)
42 1lnq_A MTHK channels, potassiu 24.9 4.7 0.00016 40.1 -3.8 64 48-120 27-90 (336)
No 1
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.6e-58 Score=496.10 Aligned_cols=384 Identities=14% Similarity=0.172 Sum_probs=289.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccceeeecccccccCcceee-CCccChHHHHHHHHHHHHhhhHHHHHH
Q 045632 42 MLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVE-MEVFSNSQLIIMTILMLAGGEVFMSML 120 (532)
Q Consensus 42 ~l~~~~~~~i~liGalll~l~~~~~~~~~~s~~dAlF~avSa~t~TGls~v~-~~~~~~~~q~ii~~Li~iGGlG~~~~~ 120 (532)
.++.+.|++++++|++|+++. ...+.+++||+|||+||+||||++++| +|++++..+.|+.+++|+||+|++++.
T Consensus 71 ~~v~l~W~~~~~~galPf~~~----~~~~~s~~dA~Fes~Sg~TtTG~tv~~~~~~lp~~~l~wr~~l~wlGGlGiivla 146 (494)
T 3pjz_A 71 LIVVLFWTVLGSAGSLPFLIA----DNPNISVTDAFFESFSALTTTGATVIVGLDELPKAILFYRQFLQWFGGMGIIVLA 146 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----CSSCCCHHHHHHHHHHHHTTCCCCCCCCCSSSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CCCCCcHHHHHHHHHHHhhcCCeEEecChhhccchHHHHHHHHHHHhhHHHHHHH
Confidence 667789999999999999972 122478999999999999999999998 599999999999999999999999999
Q ss_pred HHHHHhccCC-CcccccccCCCCCCCchhhhhhhhcccccccCCCcccccccccccccccccccchhHHHHHHHHHHHHH
Q 045632 121 ELFFIKSKLP-KHNDHLLITPSSKPTKSVEQIELNSICCSEKTDHISFDNKNNKNKNNNTILKHNSIRYLCYVVLGYFLI 199 (532)
Q Consensus 121 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iil~~~~~ 199 (532)
..+++..+.+ +++. ++|..+ +. + +++.. +.++.++|.++.+|+.
T Consensus 147 ~ail~~lg~~~~~l~-----------------------~ae~~g------~~---~-~~k~~--p~i~~ta~~l~~iy~~ 191 (494)
T 3pjz_A 147 VAILPVLGIGGMQLY-----------------------RAEIPG------PV---K-DTKMT--PRIAETAKALWYIYLS 191 (494)
T ss_dssp TSSTTTTSCCCC-------------------------------------------------C--SSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchhhhH-----------------------HHhccC------Cc---c-ccccC--ccHHHHHHHHHHHHHH
Confidence 8888765522 2221 223321 10 0 11222 3446678899999999
Q ss_pred HHHHHHHHHHHHHhhccchhhhhhhcCchhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHhcccHHH
Q 045632 200 VHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPA 279 (532)
Q Consensus 200 i~~ig~~lL~l~~~~~~~~~~~~~~~~~~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lGgigf~v 279 (532)
+++++++++. .. + +++|||+|||+||+||+|||+.|+|+++| +|+.++++++++|++||+||++
T Consensus 192 lt~~~~l~l~--~~---G----------m~~fdAi~Ha~Sa~~tgGFs~~~~Si~~~-~s~~i~~vi~~~milggl~F~v 255 (494)
T 3pjz_A 192 LTIACAVAFW--LA---G----------MTPFDAISHSFSTIAIGGFSTHDASMGYF-DSYAINLITVVFLLISACNFTL 255 (494)
T ss_dssp HHHHHHHHHH--HH---T----------CCSHHHHTTTHHHHTTCCCCSSTTGGGSS-CCTTHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHH--Hc---C----------CcHHHHHHHHHHHHhCCCCCCccchhhhh-cCHHHHHHHHHHHHHHhccHHH
Confidence 9998776543 22 2 58999999999999999999999999887 6889999999999999999999
Q ss_pred HHHHHHHHHHhhhhhh-hhHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHH
Q 045632 280 CLRFAIWVLKKITKRE-ECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVAS 358 (532)
Q Consensus 280 ~~~~~~~~~~r~~~~~-~~~~~l~~~r~~~~~~l~~s~~~r~i~~~~~~l~~ig~l~l~~~~~~~~~~~~~~~~~~~~~a 358 (532)
++++. | +|+ +. ++++.+.|+|.++.+.+++.++.++.++..+ .+ .++.++++++
T Consensus 256 ~~~~~-----~--~~~~~~------------~~~~~~~e~r~~l~~~~~~~~~~~~~l~~~~----~~--~~~~~~l~~a 310 (494)
T 3pjz_A 256 HFAAF-----A--SGGVHP------------KYYWKDPEFRAFIFIQVLLFLVCFLLLLKHH----SY--TSPYDAFDQA 310 (494)
T ss_dssp HHHHT-----T--TSTTCH------------HHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT----CC--SSHHHHHHHH
T ss_pred HHHHH-----h--cccchh------------hHHhCCcHHHhhHHHHHHHHHHHHHHHHHcc----cc--CCHHHHHHHH
Confidence 98742 1 110 11 1222357888888777666655554443222 11 2689999999
Q ss_pred HHHhhccC-CccccCccCCCCchhHHHHHHHHhhcCC---cceEEe--------cc---c--cccCCCC-----Cccccc
Q 045632 359 LFEVVNSR-HTGESVLDLSIISPAILVLFVVMMYLPP---YTSFLP--------AR---N--CDEGDSK-----NCREKE 416 (532)
Q Consensus 359 lFqsvSa~-TaGFs~~~~~~~~~~~~~iliilMfIGg---stt~~~--------~r---~--~~~~~~~-----~~~~~~ 416 (532)
+||++|++ |+||++.|+++|++.++++++++||||| ||+..+ +| . ++..||+ ++++|+
T Consensus 311 ~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv~r~~il~~~~~~el~~~~~P~~v~~v~~~~r~ 390 (494)
T 3pjz_A 311 LFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKVIRILLLTLQGARELKRLVHPRAVYTIKVGGSA 390 (494)
T ss_dssp HHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCHHHHHHHHHHHHHHHHHHHCSSSCCCCCSSSCC
T ss_pred HHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhHHHHHHHHHHHHHHHhcccCCCcceeeeECCEE
Confidence 99999995 5599999999999999999999999997 564321 11 1 2223553 457888
Q ss_pred ccchhHHHHHHHHHHHHHHHH--HHHHHHHccCCCCCCCCCccHHHHHHHHhcccCccccCCCccCccccCccccccCcc
Q 045632 417 KETKSLLECLAFSQLSYLAIF--IILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKW 494 (532)
Q Consensus 417 ~~~~~i~~~~~~~~l~~~~i~--~~~i~~~e~~~~~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~ 494 (532)
++++.+.++..+..++.+++. .+++.+.+ .|+.+++||++||++|||+++|.+ || |
T Consensus 391 i~~~~v~~~~~~~~ly~~~~~~~~~~l~~~g----------~~~~~a~~~v~Sal~nvG~s~G~v-----g~-------~ 448 (494)
T 3pjz_A 391 LPQRVVDAVWGFFSAYALVFVVCMLGLIATG----------MDELSAFSAVAATLNNLGPGLGEV-----AL-------H 448 (494)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS----------SCHHHHHHHHHHHTTTCCSCCSSS-----CC-------C
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHcCCCCccccc-----CC-------C
Confidence 998888888877766655443 33333332 689999999999999999999974 32 4
Q ss_pred ccccccCChHHHHHHHHHHHhcCCCCCcc---CCCccee
Q 045632 495 FGLVGKWSNGGKLILILVMFFGRIKKFNM---KGGKAWK 530 (532)
Q Consensus 495 ~s~~~~l~~~~Klili~lM~iGRl~~~~~---~gg~~~~ 530 (532)
| +++|+.+|++++++|++||+|++|+ ..+++||
T Consensus 449 ~---~~L~~~~K~vl~~~M~~GRLei~tvl~l~~p~fWr 484 (494)
T 3pjz_A 449 F---GDVNDKAKWVLIVSMLFGRLEIFTLLILLTPTFWR 484 (494)
T ss_dssp C---SSSCHHHHHHHHHHHHHHHTTTHHHHTTSCSTTCC
T ss_pred c---ccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 4 5999999999999999999999998 5899998
No 2
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=99.85 E-value=7.7e-21 Score=204.02 Aligned_cols=276 Identities=14% Similarity=0.092 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCchhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHH
Q 045632 191 YVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQV 270 (532)
Q Consensus 191 ~iil~~~~~i~~ig~~lL~l~~~~~~~~~~~~~~~~~~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm 270 (532)
.++...++++-++|++-++ .. + ....++.||+|+|+||+||||.++.|+ .++. .....++-.++.
T Consensus 71 ~~v~l~W~~~~~~galPf~----~~-~-------~~~~s~~dA~Fes~Sg~TtTG~tv~~~-~~~l--p~~~l~wr~~l~ 135 (494)
T 3pjz_A 71 LIVVLFWTVLGSAGSLPFL----IA-D-------NPNISVTDAFFESFSALTTTGATVIVG-LDEL--PKAILFYRQFLQ 135 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HC-C-------SSCCCHHHHHHHHHHHHTTCCCCCCCC-CSSS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----hc-C-------CCCCcHHHHHHHHHHHhhcCCeEEecC-hhhc--cchHHHHHHHHH
Confidence 3455666777777776432 11 1 111479999999999999999999986 3332 345678888999
Q ss_pred HHhcccHHHHHHHHHHHHHhhhhhhhhHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCC
Q 045632 271 LLGNTLYPACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLS--RSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDD 348 (532)
Q Consensus 271 ~lGgigf~v~~~~~~~~~~r~~~~~~~~~~l~~~r~~~~~~l~~--s~~~r~i~~~~~~l~~ig~l~l~~~~~~~~~~~~ 348 (532)
++||+|+.++.-.+....+.. +.+-.+...-+|.+ ..++.| ....|.++.+++.+++++++.+++ .+
T Consensus 136 wlGGlGiivla~ail~~lg~~-~~~l~~ae~~g~~~--~~k~~p~i~~ta~~l~~iy~~lt~~~~l~l~~--------~G 204 (494)
T 3pjz_A 136 WFGGMGIIVLAVAILPVLGIG-GMQLYRAEIPGPVK--DTKMTPRIAETAKALWYIYLSLTIACAVAFWL--------AG 204 (494)
T ss_dssp HHHHHHHHTTTTSSTTTTSCC-CC------------------CSSSHHHHHHHHHHHHHHHHHHHHHHHH--------HT
T ss_pred HHhhHHHHHHHHHHHHHcCCc-hhhhHHHhccCCcc--ccccCccHHHHHHHHHHHHHHHHHHHHHHHHH--------cC
Confidence 999999988753221111100 11101100000000 001111 356788888888888887666543 23
Q ss_pred CCHHHHHHHHHHHhhcc-CCccccCccC--CCC-chhHHHHHHHHhhcCCcceEEe----ccccccCCCCCcccccccch
Q 045632 349 LNFYQKLVASLFEVVNS-RHTGESVLDL--SII-SPAILVLFVVMMYLPPYTSFLP----ARNCDEGDSKNCREKEKETK 420 (532)
Q Consensus 349 ~~~~~~~~~alFqsvSa-~TaGFs~~~~--~~~-~~~~~~iliilMfIGgstt~~~----~r~~~~~~~~~~~~~~~~~~ 420 (532)
+++ ++|+||++|+ +|+||++.|. ..+ ++..+++++++|++||-. |.+ +|++++ ..|+..++
T Consensus 205 m~~----fdAi~Ha~Sa~~tgGFs~~~~Si~~~~s~~i~~vi~~~milggl~-F~v~~~~~~~~~~------~~~~~~~~ 273 (494)
T 3pjz_A 205 MTP----FDAISHSFSTIAIGGFSTHDASMGYFDSYAINLITVVFLLISACN-FTLHFAAFASGGV------HPKYYWKD 273 (494)
T ss_dssp CCS----HHHHTTTHHHHTTCCCCSSTTGGGSSCCTTHHHHHHHHHHHHTSC-HHHHHHHTTTSTT------CHHHHHTS
T ss_pred CcH----HHHHHHHHHHHhCCCCCCccchhhhhcCHHHHHHHHHHHHHHhcc-HHHHHHHHhcccc------hhhHHhCC
Confidence 444 6699999999 9999999974 355 466889999999999821 221 222210 01222122
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHhcccCccccCCCccCccccCccccccCcccccccc
Q 045632 421 SLLECLAFSQLSYLAIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGK 500 (532)
Q Consensus 421 ~i~~~~~~~~l~~~~i~~~~i~~~e~~~~~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~ 500 (532)
...|.++...+...++..+.++..|. .++....+.+++||++|+.+|+|+++.+ .++
T Consensus 274 ~e~r~~l~~~~~~~~~~~~~l~~~~~----~~~~~~~l~~a~Fq~vS~~TttGF~t~d-------------------~~~ 330 (494)
T 3pjz_A 274 PEFRAFIFIQVLLFLVCFLLLLKHHS----YTSPYDAFDQALFQTVSISTTAGFTTTG-------------------FAD 330 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC----CSSHHHHHHHHHHHHHHTTTTCCCCSCC-------------------CSS
T ss_pred cHHHhhHHHHHHHHHHHHHHHHHccc----cCCHHHHHHHHHHheeecccCCcccccC-------------------hHh
Confidence 22333333322222222222222221 0112356889999999999888999865 248
Q ss_pred CChHHHHHHHHHHHhcCCCCCccCCCc
Q 045632 501 WSNGGKLILILVMFFGRIKKFNMKGGK 527 (532)
Q Consensus 501 l~~~~Klili~lM~iGRl~~~~~~gg~ 527 (532)
|++.+|++++++|++|. .+.+++||=
T Consensus 331 w~~~~~~ll~~LMfIGG-~~GSTaGGI 356 (494)
T 3pjz_A 331 WPLFLPVLLLFSSFIGG-CAGSTGGGM 356 (494)
T ss_dssp CCTHHHHHHHHHTTSCS-CTTSSCCSS
T ss_pred CCHHHHHHHHHHHHHcC-CcccCCCch
Confidence 99999999999999999 888888873
No 3
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=92.68 E-value=0.32 Score=48.02 Aligned_cols=138 Identities=10% Similarity=0.060 Sum_probs=73.1
Q ss_pred HHHHHHHHhhcc-CCccccCccCCCCchhHHHHHHHHhhcCCcceEEe--------cc-ccccCCCCCccc-ccccchh-
Q 045632 354 KLVASLFEVVNS-RHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLP--------AR-NCDEGDSKNCRE-KEKETKS- 421 (532)
Q Consensus 354 ~~~~alFqsvSa-~TaGFs~~~~~~~~~~~~~iliilMfIGgstt~~~--------~r-~~~~~~~~~~~~-~~~~~~~- 421 (532)
.+.+|++-++.+ +|.|| .|+...++..+++.++.+++|-...... .. ..++.. +...+ ...++..
T Consensus 93 ~~~~a~yf~~~t~tTvGy--Gd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ 169 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGY--GHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPV-LYFHIRWGFSKQVV 169 (280)
T ss_dssp SHHHHHHHHHHHHTTCCC--CSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTT-TTC------CCHHH
T ss_pred Chhcchhheeeeeecccc--CCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCChhHH
Confidence 345666777777 99997 5778888999999999888874111000 00 001100 00010 1111111
Q ss_pred -HHHHHHH-H--HHHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHhcccCccccCCCccCccccCccccccCccccc
Q 045632 422 -LLECLAF-S--QLSYLAIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGL 497 (532)
Q Consensus 422 -i~~~~~~-~--~l~~~~i~~~~i~~~e~~~~~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~ 497 (532)
....... . .+.+++++...+...|.+ .++.++++-++-.++|||++--.+ ..+-
T Consensus 170 ~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~--------~s~~da~y~~~iTltTvGyGD~~p------------~t~~-- 227 (280)
T 3ukm_A 170 AIVHAVLLGFVTVSCFFFIPAAVFSVLEDD--------WNFLESFYFCFISLSTIGLGDYVP------------GEGY-- 227 (280)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHSSS--------CCHHHHHHHHHHHHTTCCCCSCCS------------SCSS--
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcC--------CchhhhhhheeeeeecccCCCCCC------------CCCc--
Confidence 1111111 1 111222334444445532 678999999888889999754221 1111
Q ss_pred cccCChHHHHHHHHHHHhc
Q 045632 498 VGKWSNGGKLILILVMFFG 516 (532)
Q Consensus 498 ~~~l~~~~Klili~lM~iG 516 (532)
....+..+|++.++.|+.|
T Consensus 228 ~~~~~~l~r~~~~~~il~G 246 (280)
T 3ukm_A 228 NQKFRELYKIGITCYLLLG 246 (280)
T ss_dssp SCTTHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHH
Confidence 1234457899999999887
No 4
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=90.72 E-value=2.1 Score=42.07 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=29.8
Q ss_pred hhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHhc
Q 045632 228 QAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGN 274 (532)
Q Consensus 228 ~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lGg 274 (532)
-++.||++.++.+++|-|+.-. .| .+..+.+..++.+++|=
T Consensus 92 w~~~~a~yf~~~t~tTvGyGd~----~P--~T~~Gk~f~~~~~l~Gi 132 (280)
T 3ukm_A 92 WDFTSALFFASTVLSTTGYGHT----VP--LSDGGKAFCIIYSVIGI 132 (280)
T ss_dssp SSHHHHHHHHHHHHTTCCCCSS----CC--CSHHHHHHHHHHHHHHH
T ss_pred CChhcchhheeeeeeccccCCc----CC--CCchhHHHHHHHHHHHH
Confidence 3789999999999999998532 22 23567777777666653
No 5
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=89.53 E-value=1.2 Score=37.71 Aligned_cols=83 Identities=11% Similarity=0.113 Sum_probs=51.3
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccceeeecccccccCcceeeCCccChHHHHHHH
Q 045632 27 STFIFLAVKYIMNPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMT 106 (532)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~i~liGalll~l~~~~~~~~~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~ 106 (532)
+.+..+.+..+..+.+......+++.++|++.++.. ++.++.||++-++...||.|.. |...-+..++++-.
T Consensus 10 rl~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------e~~~~~~a~y~~~~T~tTvGyG--di~P~t~~gr~~~~ 81 (114)
T 2q67_A 10 RMLRACLRAWKDKEFQVLFVLTILTLISGTIFYSTV------EGLRPIDALYFSVVTLTTVGAG--NFSPQTDFGKIFTI 81 (114)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH------SCCCHHHHHHHHHHHHTSCCCS--SCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHhcceeCC--CCccCCHhHHHHHH
Confidence 333333333334444555555566677888887751 2358999999999999999976 33334566776555
Q ss_pred HHHHHhhhHHHH
Q 045632 107 ILMLAGGEVFMS 118 (532)
Q Consensus 107 ~Li~iGGlG~~~ 118 (532)
+.+.+ |+++..
T Consensus 82 ~~~~~-G~~~~~ 92 (114)
T 2q67_A 82 LYIFI-GIGLVF 92 (114)
T ss_dssp HHHHH-HHHHHH
T ss_pred HHHHH-HHHHHH
Confidence 55444 444443
No 6
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=87.98 E-value=0.95 Score=45.25 Aligned_cols=135 Identities=14% Similarity=0.117 Sum_probs=71.3
Q ss_pred HHHHHHHhhcc-CCccccCccCCCCchhHHHHHHHHhhcCCcc-eEEe----------ccc-cccCCCCCcccccccchh
Q 045632 355 LVASLFEVVNS-RHTGESVLDLSIISPAILVLFVVMMYLPPYT-SFLP----------ARN-CDEGDSKNCREKEKETKS 421 (532)
Q Consensus 355 ~~~alFqsvSa-~TaGFs~~~~~~~~~~~~~iliilMfIGgst-t~~~----------~r~-~~~~~~~~~~~~~~~~~~ 421 (532)
+.+|++-++.+ +|.|| .|+..-++..+++.++.+++|-.. .+.+ .|. .++.+ +...+++.+.+.
T Consensus 116 ~~~a~yf~~~t~tTvGY--Gdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le-~~~~~~~~~~~~ 192 (309)
T 3um7_A 116 LGSAFFFSGTIITTIGY--GNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIE-AIFLKWHVPPEL 192 (309)
T ss_dssp HHHHHHHHHHHHTSCCC--CSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH-HHHTTTC--CCH
T ss_pred hhhhhHhhheeeeeccc--CCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHhccccchhH
Confidence 45566666666 99998 577778889999999998887411 1000 111 00000 000111111111
Q ss_pred --HHHHHHHHH---HHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHhcccCccccCCCccCccccCccccccCcccc
Q 045632 422 --LLECLAFSQ---LSYLAIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFG 496 (532)
Q Consensus 422 --i~~~~~~~~---l~~~~i~~~~i~~~e~~~~~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s 496 (532)
+........ +.+++++...+...|+ .++.++++-++-.++|||++--. |..+
T Consensus 193 ~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~---------~~~~da~y~~~vTltTvGyGd~~------------p~t~-- 249 (309)
T 3um7_A 193 VRVLSAMLFLLIGCLLFVLTPTFVFCYMED---------WSKLEAIYFVIVTLTTVGFGDYV------------AGAD-- 249 (309)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHC---------CCHHHHHHHHHHHHTTCCCSSCC------------TTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCHHHHHHHHHhheeccccCCCC------------CCCc--
Confidence 111111111 1122223344444553 57899999998888999975422 2222
Q ss_pred ccccCChHHHHHHHHHHHhc
Q 045632 497 LVGKWSNGGKLILILVMFFG 516 (532)
Q Consensus 497 ~~~~l~~~~Klili~lM~iG 516 (532)
.+...+.-|++.++.|+.|
T Consensus 250 -~g~~~~~y~~~~~~~il~G 268 (309)
T 3um7_A 250 -PRQDSPAYQPLVWFWILLG 268 (309)
T ss_dssp -TTCCCSTHHHHHHHHHHHH
T ss_pred -cccccchHHHHHHHHHHHH
Confidence 2344556777888877776
No 7
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=87.16 E-value=2 Score=37.84 Aligned_cols=80 Identities=10% Similarity=0.083 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccceeeecccccccCcceeeCCccChHHHHHH
Q 045632 26 MSTFIFLAVKYIMNPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIM 105 (532)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~i~liGalll~l~~~~~~~~~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii 105 (532)
++...-+....+..+....+..++++.+.|++.++.. .+.++.||++-++-.+||.|.. |+...+..++++-
T Consensus 12 ~rl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------e~~~~~~a~y~~~~t~tTvGyG--d~~p~t~~~r~~~ 83 (148)
T 3vou_A 12 KRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTV------EGLRPLDALYFSVVTLTTVGDG--NFSPQTDFGKVFT 83 (148)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHTTCCCS--SCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHccCCC--CCCCCCccHHHHH
Confidence 3333333333344455555666666777888877751 2358999999999999999976 3333456777766
Q ss_pred HHHHHHhh
Q 045632 106 TILMLAGG 113 (532)
Q Consensus 106 ~~Li~iGG 113 (532)
.+.+.+|-
T Consensus 84 ~~~~~~g~ 91 (148)
T 3vou_A 84 ILYIFIGI 91 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 8
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=86.24 E-value=9.2 Score=38.07 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=29.2
Q ss_pred hHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHh
Q 045632 229 AETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLG 273 (532)
Q Consensus 229 ~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lG 273 (532)
++.||++.++.+++|-|+.- +.+ .+..+.++.++.+++|
T Consensus 115 ~~~~a~yf~~~t~tTvGYGd----i~P--~T~~gk~~~i~~~l~G 153 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGN----VAL--RTDAGRLFCIFYALVG 153 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCS----SCC--CSHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCC----CCC--CCccchhHHHHHHHHH
Confidence 68899999999999999852 222 2456788777777765
No 9
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=84.48 E-value=4 Score=33.20 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=32.2
Q ss_pred ccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhc
Q 045632 456 FNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFG 516 (532)
Q Consensus 456 ~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iG 516 (532)
.++.++++-++..++|+|++--. .-++.+|++.++.|+.|
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~---------------------P~t~~gr~~~~~~~~~G 70 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFS---------------------PQTDFGKIFTILYIFIG 70 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSC---------------------CCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCC---------------------CCCccHHHHHHHHHHHH
Confidence 57899999999999999974321 34688999999999987
No 10
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=84.45 E-value=1.4 Score=36.35 Aligned_cols=74 Identities=11% Similarity=-0.006 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCC-CCCCCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhHHHHHHH
Q 045632 45 LCYFTALSLLGYFLLSVTKPRTH-STDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSMLE 121 (532)
Q Consensus 45 ~~~~~~i~liGalll~l~~~~~~-~~~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG~~~~~~ 121 (532)
+..++.+.++|+..++......+ +...++.||++-++..+||.|.- |+...+..++++..+.+ +-|+++..+..
T Consensus 12 ~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyG--Di~P~t~~gr~~~~~~~-l~G~~~~~~~~ 86 (103)
T 2k1e_A 12 EEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYG--DRYPVTEEGRKVAEQVM-KAGIEVFALVT 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCC--SSCCCSSSCTHHHHHHH-HHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCC--CCCCCChhHHHHHHHHH-HHHHHHHHHHH
Confidence 34445566778888876332211 23358999999999999999975 32222334444433333 44555544433
No 11
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=81.00 E-value=6.5 Score=30.84 Aligned_cols=53 Identities=9% Similarity=-0.010 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHccCCCCCCCCCccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHH
Q 045632 434 LAIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVM 513 (532)
Q Consensus 434 ~~i~~~~i~~~e~~~~~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM 513 (532)
++.+.......|+ .++.++++-++..++|+|++ +. . ..++.+|++.++.|
T Consensus 14 ~~~g~~~~~~~e~---------~~~~~a~yf~~~T~tTvGyG--di------------------~-P~t~~~r~~~~~~~ 63 (82)
T 3ldc_A 14 IIYGTAGFHFIEG---------ESWTVSLYWTFVTIATVGYG--DY------------------S-PHTPLGMYFTCTLI 63 (82)
T ss_dssp HHHHHHHHHHHHC---------CCHHHHHHHHHHHHTTCCCC--SS------------------C-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---------CCHHHHHHHHHHHhcccCCC--CC------------------C-CCCccHHHHHHHHH
Confidence 3444555555664 47899999999999999973 31 1 24688999999999
Q ss_pred Hhc
Q 045632 514 FFG 516 (532)
Q Consensus 514 ~iG 516 (532)
+.|
T Consensus 64 ~~G 66 (82)
T 3ldc_A 64 VLG 66 (82)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 12
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=80.98 E-value=2.9 Score=34.10 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhHHH
Q 045632 39 NPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFM 117 (532)
Q Consensus 39 ~~~~l~~~~~~~i~liGalll~l~~~~~~~~~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG~~ 117 (532)
.+.+..+...+++.+.|++.++.. ++.++.||++-++..+||-|.. |....+..++++-.+.+.+| +++.
T Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~~------e~~~~~~a~yf~~~T~tTvGyG--di~P~t~~gr~~~~~~~~~G-~~~~ 74 (97)
T 3ouf_A 5 KEFQVLFVLTILTLISGTIFYSTV------EGLRPIDALYFSVVTLTTVGYG--DFSPQTDFGKIFTILYIFIG-IGLV 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------SCCCHHHHHHHHHHHHTTCCCC--SSCCCSHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHccCCC--CCCCCCccHHHHHHHHHHHH-HHHH
Confidence 344555555666677888888752 2468999999999999999976 33334567777766666544 4443
No 13
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=80.45 E-value=4.1 Score=35.30 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhHHHHHHH
Q 045632 43 LHLCYFTALSLLGYFLLSVTKPRTH-STDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSMLE 121 (532)
Q Consensus 43 l~~~~~~~i~liGalll~l~~~~~~-~~~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG~~~~~~ 121 (532)
...+.++++.++|+..++......+ +...++.||++-++..+||.|.. |+...+..++++..+.+ +-|+++..+..
T Consensus 10 ~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyG--d~~P~t~~~r~~~~~~~-~~G~~~~~~~~ 86 (139)
T 3eff_K 10 AATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYG--DLYPVTLWGRLVAVVVM-VAGITSFGLVT 86 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCS--SSCCCSSHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCC--CCcCCCcCHHHHHHHHH-HHHHHHHHHHH
Confidence 3444555567788888886332211 22368999999999999999975 33224556776555554 44555554443
Q ss_pred HH
Q 045632 122 LF 123 (532)
Q Consensus 122 ~~ 123 (532)
..
T Consensus 87 ~~ 88 (139)
T 3eff_K 87 AA 88 (139)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 14
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=80.28 E-value=5.7 Score=34.34 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=39.3
Q ss_pred HHHHHHHHHccCCCCCCCCCccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHh
Q 045632 436 IFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFF 515 (532)
Q Consensus 436 i~~~~i~~~e~~~~~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~i 515 (532)
++...+...|.+. +++...++.++++=++..++|||++--. ..++.+|++.++.|++
T Consensus 21 ~~a~~~~~~e~~~--~~~~~~~~~~a~yf~~~T~tTvGyGd~~---------------------P~t~~~r~~~~~~~~~ 77 (139)
T 3eff_K 21 AGSYLAVLAERGA--PGAQLITYPRALWWSVETATTVGYGDLY---------------------PVTLWGRLVAVVVMVA 77 (139)
T ss_dssp HHHHHHHHTTSSC--TTCCCCCHHHHHHHHHHHHTTCCCSSSC---------------------CCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCcccCCHHHHHHHHheeeecccCCCCc---------------------CCCcCHHHHHHHHHHH
Confidence 3444555566532 1122357889999888888999964321 2467899999999988
Q ss_pred c
Q 045632 516 G 516 (532)
Q Consensus 516 G 516 (532)
|
T Consensus 78 G 78 (139)
T 3eff_K 78 G 78 (139)
T ss_dssp H
T ss_pred H
Confidence 7
No 15
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=79.67 E-value=8.9 Score=32.45 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=39.5
Q ss_pred HHHHHHHHccCCCCCCCCCccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhc
Q 045632 437 FIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFG 516 (532)
Q Consensus 437 ~~~~i~~~e~~~~~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iG 516 (532)
+...+...|.+.. ++...++.+++.-++..+.|+|++--. ..++.+|++.++.|+.|
T Consensus 43 ~a~~~~~~E~~~~--~~~~~~~~~a~y~~~~T~tTvGyGDi~---------------------P~t~~gr~~~~~~~~~G 99 (122)
T 2ih3_C 43 GSYLAVLAERGAP--GAQLITYPRALWWACETATTVAYGDLY---------------------PVTLWGRLVAVVVMVAG 99 (122)
T ss_dssp HHHHHHHHHTTST--TCCCCSHHHHHHHHHHHHTTCCCSSSC---------------------CCSHHHHHHHHHHHHHH
T ss_pred HHHhhheeeecCC--CCccCccccchhheeeeeeeeecCCCC---------------------CCCccHHHHHHHHHHHH
Confidence 4445556675421 122357889988888888999974321 35788999999999887
Q ss_pred C
Q 045632 517 R 517 (532)
Q Consensus 517 R 517 (532)
=
T Consensus 100 i 100 (122)
T 2ih3_C 100 I 100 (122)
T ss_dssp H
T ss_pred H
Confidence 3
No 16
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=79.40 E-value=3 Score=32.84 Aligned_cols=66 Identities=9% Similarity=0.046 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhHHH
Q 045632 43 LHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFM 117 (532)
Q Consensus 43 l~~~~~~~i~liGalll~l~~~~~~~~~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG~~ 117 (532)
+.+..++.+.+.|++.++.. ++.++.||++-++..+||-|.. |....+..++++-.+.+..| +++.
T Consensus 5 ~~~~l~~~~~~~g~~~~~~~------e~~~~~~a~yf~~~T~tTvGyG--di~P~t~~~r~~~~~~~~~G-~~~~ 70 (82)
T 3ldc_A 5 RILLLVLAVIIYGTAGFHFI------EGESWTVSLYWTFVTIATVGYG--DYSPHTPLGMYFTCTLIVLG-IGTF 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHTTCCCC--SSCCCSHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------hcCCHHHHHHHHHHHhcccCCC--CCCCCCccHHHHHHHHHHHH-HHHH
Confidence 34445555678899988752 2358999999999999999965 33334567777666655444 4433
No 17
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=78.54 E-value=7.5 Score=32.57 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=32.0
Q ss_pred ccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhcC
Q 045632 456 FNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGR 517 (532)
Q Consensus 456 ~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iGR 517 (532)
.++.+++.-++..++|+|++--. .-++.+|++.++.|+.|=
T Consensus 48 ~~~~~a~y~~~~T~tTvGyGdi~---------------------P~t~~gr~~~~~~~~~G~ 88 (114)
T 2q67_A 48 LRPIDALYFSVVTLTTVGAGNFS---------------------PQTDFGKIFTILYIFIGI 88 (114)
T ss_dssp CCHHHHHHHHHHHHTSCCCSSCC---------------------CCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcceeCCCCc---------------------cCCHhHHHHHHHHHHHHH
Confidence 57889999988888999974321 346789999999998873
No 18
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=77.36 E-value=7.4 Score=39.19 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCcccceeeecccccccCcceeeCCccChHHH
Q 045632 24 CFMSTFIFLAVKYIMNPLMLHLCYFTALSLLGYFLLSVTKPRTH-STDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQL 102 (532)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~liGalll~l~~~~~~-~~~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q 102 (532)
..+.++......+......+.++.++++.+++++++++.....+ ....++.||++-|+..+||.|..- +..-+..++
T Consensus 47 ~~~d~~~~~l~~~~~~ll~~~~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGD--i~P~t~~gr 124 (333)
T 1p7b_A 47 VWRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGD--MHPQTVYAH 124 (333)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSC--CCCCSHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCC--CcCCCHHHH
Confidence 34455554443222222234444555566777777664211111 123589999999999999999763 333455677
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 045632 103 IIMTILMLAGGEVFMSMLE 121 (532)
Q Consensus 103 ~ii~~Li~iGGlG~~~~~~ 121 (532)
++.. +..+-|+++..+..
T Consensus 125 ~~~~-~~~l~G~~~~a~~i 142 (333)
T 1p7b_A 125 AIAT-LEIFVGMSGIALST 142 (333)
T ss_dssp HHHH-HHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHH
Confidence 6554 44455655554433
No 19
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=76.90 E-value=11 Score=33.43 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=39.9
Q ss_pred HHHHHHHHHHccCCCCCCCCCccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHH
Q 045632 435 AIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMF 514 (532)
Q Consensus 435 ~i~~~~i~~~e~~~~~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~ 514 (532)
+++..++...|.... ++...++.+++.=++..++|||++--. ..++.+|++.++.|+
T Consensus 64 ~~~a~~~~~~E~~~~--~~~~~s~~~a~y~s~vTltTVGYGDi~---------------------P~t~~gr~~~~~~~l 120 (155)
T 2a9h_A 64 LAGSYLAVLAERGAP--GAALISYPDALWWSVETATTVGYGDLY---------------------PVTLWGRCVAVVVMV 120 (155)
T ss_dssp HHHHHHHHHHHTTSS--CSSTTSHHHHHHHHHHHHTTCCCSSSC---------------------CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC--CCccCcccceeheeeeeeecccCCCCC---------------------CCChhHHHHHHHHHH
Confidence 334445556675321 111247888888888888999974321 356889999999999
Q ss_pred hcC
Q 045632 515 FGR 517 (532)
Q Consensus 515 iGR 517 (532)
.|=
T Consensus 121 ~Gv 123 (155)
T 2a9h_A 121 AGI 123 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 20
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=76.22 E-value=26 Score=29.48 Aligned_cols=42 Identities=12% Similarity=-0.027 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHhcc
Q 045632 228 QAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNT 275 (532)
Q Consensus 228 ~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lGgi 275 (532)
.++.||+..++.+.+|-|+.-. .+ .++...++.++.+++|-.
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi----~P--~t~~gr~~~~~~~~~Gi~ 101 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDL----YP--VTLWGRLVAVVVMVAGIT 101 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSS----CC--CSHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCC----CC--CCccHHHHHHHHHHHHHH
Confidence 5799999999999999998622 22 245667777776666543
No 21
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=74.95 E-value=23 Score=31.35 Aligned_cols=45 Identities=16% Similarity=0.052 Sum_probs=31.5
Q ss_pred hhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHhcccHH
Q 045632 228 QAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYP 278 (532)
Q Consensus 228 ~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lGgigf~ 278 (532)
.++.||++.++.+++|-|+.- +.+ .++...++.++.+++|-.-++
T Consensus 83 ~s~~~a~y~s~vTltTVGYGD----i~P--~t~~gr~~~~~~~l~Gv~~~a 127 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGD----LYP--VTLWGRCVAVVVMVAGITSYG 127 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSS----SCC--CSHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceeheeeeeeecccCCC----CCC--CChhHHHHHHHHHHHHHHHHH
Confidence 579999999999999999852 222 245667777777766644333
No 22
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=74.85 E-value=9.7 Score=33.29 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=31.8
Q ss_pred ccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhc
Q 045632 456 FNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFG 516 (532)
Q Consensus 456 ~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iG 516 (532)
.++.++++-++..++|+|++--. .-++.+|++.++.|+.|
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~---------------------p~t~~~r~~~~~~~~~g 90 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFS---------------------PQTDFGKVFTILYIFIG 90 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCC---------------------CCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCC---------------------CCCccHHHHHHHHHHHH
Confidence 57889999888888999974321 24688999999999987
No 23
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=72.95 E-value=5.5 Score=32.66 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHccCCCCCCCCCccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHH
Q 045632 434 LAIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVM 513 (532)
Q Consensus 434 ~~i~~~~i~~~e~~~~~~~~~~~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM 513 (532)
++++..++...|... +++...++.+++.-++..+.|+|++--. .-++.+|++.++.|
T Consensus 19 ~~~~a~~~~~~E~~~--~~~~~~~~~~a~y~~~~T~tTvGyGDi~---------------------P~t~~gr~~~~~~~ 75 (103)
T 2k1e_A 19 LEEASKKAVEAERGA--PGAALISYPDAIWWSVETATTVGYGDRY---------------------PVTEEGRKVAEQVM 75 (103)
T ss_dssp HHHHHHHHHHHHTTS--TTCCCCCGGGTTTTTTGGGGCCSCCSSC---------------------CCSSSCTHHHHHHH
T ss_pred HHHHHHhhhhhccCC--CCcccccHHHHHHHHHHHHhcccCCCCC---------------------CCChhHHHHHHHHH
Confidence 334455555667532 1112247888888888888999974321 24566788888888
Q ss_pred HhcC
Q 045632 514 FFGR 517 (532)
Q Consensus 514 ~iGR 517 (532)
+.|=
T Consensus 76 l~G~ 79 (103)
T 2k1e_A 76 KAGI 79 (103)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8773
No 24
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=72.59 E-value=11 Score=32.72 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=32.2
Q ss_pred ccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhcC
Q 045632 456 FNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGR 517 (532)
Q Consensus 456 ~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iGR 517 (532)
.++.+++.=++..++|||++ +. ...++.+|++.++.|+.|-
T Consensus 42 ~~~~~a~y~~~~T~tTvGyG--Di-------------------~P~t~~gr~~~~~~~~~g~ 82 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYG--DI-------------------VPVTPIGRILASIMMLFGI 82 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCS--SS-------------------CCCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcccCC--CC-------------------CCCCHhHHHHHHHHHHHHH
Confidence 47888888888888999964 31 1357899999999999884
No 25
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=71.07 E-value=7.1 Score=33.87 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=35.0
Q ss_pred CCCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhHHHHHHHHH
Q 045632 70 DPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSMLELF 123 (532)
Q Consensus 70 ~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG~~~~~~~~ 123 (532)
..++.||++-++..+||-|.- |+..-+..++++-.+.+.+ |+++.......
T Consensus 41 ~~~~~~a~y~~~~T~tTvGyG--Di~P~t~~gr~~~~~~~~~-g~~~~~~~~~~ 91 (137)
T 4h33_A 41 INNYPDALWWAIVTATTVGYG--DIVPVTPIGRILASIMMLF-GIAFIGMITST 91 (137)
T ss_dssp CCSHHHHHHHHHHHHTTCCCS--SSCCCSHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcccCC--CCCCCCHhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 358999999999999999965 3333567788766666555 45555444333
No 26
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=61.47 E-value=11 Score=38.07 Aligned_cols=110 Identities=12% Similarity=0.113 Sum_probs=58.4
Q ss_pred CCCCCCCceEEEecccchhhHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHhhcCC----CCC--------C--CCC
Q 045632 5 GSSSMKPGLIFFNCSTKISCFMSTFIFLAVKYIMNPLMLHLCYFTALSLLGYFLLSVTK----PRT--------H--STD 70 (532)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~liGalll~l~~----~~~--------~--~~~ 70 (532)
|+...+.+-+ .+.....+.+|-.+.--+-.....+.+++|++.-++-++++|+.. +.. + ...
T Consensus 14 G~~nv~~~~~----~~~~~~~~D~f~tlv~l~Wr~~llif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~~~ 89 (340)
T 3sya_A 14 GKCNVHHGNV----RETYRYLTDIFTTLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNL 89 (340)
T ss_dssp SCBCCCCCCC----CCTHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBSCC
T ss_pred CcEEEEEcCc----ccchHHHHhHHHHheeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhccc
Confidence 4444444432 233344555555565422222224444556655556666655311 100 0 123
Q ss_pred CCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhHHHHH
Q 045632 71 PKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSM 119 (532)
Q Consensus 71 ~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG~~~~ 119 (532)
.++.||++-|+...||-|.--..+..-.+.++++.. ++.+-|+.+.++
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~-~~~l~G~~l~a~ 137 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLL-IQSVLGSIVNAF 137 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHH-HHHHHHHHHHHH
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHH-HHHHHHHHHHHH
Confidence 489999999999999999875443333456765444 444555544443
No 27
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=60.51 E-value=7.7 Score=38.45 Aligned_cols=74 Identities=12% Similarity=0.058 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCC-CCCCCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhHHHHHHHH
Q 045632 46 CYFTALSLLGYFLLSVTKPRTH-STDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSMLEL 122 (532)
Q Consensus 46 ~~~~~i~liGalll~l~~~~~~-~~~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG~~~~~~~ 122 (532)
+.++++.++-+.++++.....+ ....++.||++-|+..+||.|.. |+..-+..++++. .+..+.|+++.++...
T Consensus 55 ~~~~~~~l~fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYG--Di~P~t~~gr~~~-~~~~l~G~~~~a~~~g 129 (301)
T 1xl4_A 55 GLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYG--KLIPIGPLANTLV-TLEALCGMLGLAVAAS 129 (301)
T ss_dssp HHHHHHHHHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCS--SSCCCHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCcCCHHHHHHHhhhheeccCCC--CCcCCCHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3333343444444655221111 23468999999999999999977 4433445666655 4444556555544333
No 28
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=55.23 E-value=8.7 Score=38.81 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=33.6
Q ss_pred CCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhHHHHH
Q 045632 71 PKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSM 119 (532)
Q Consensus 71 ~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG~~~~ 119 (532)
.++.||++-|+...||.|.--..+..-.+.++++. .++.+-|+.+.++
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~-~~~~l~G~~l~a~ 140 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMV-VVQSIVGCIIDSF 140 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHH-HHHHHHHHHHHHH
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHH-HHHHHHHHHHHHH
Confidence 58999999999999999987554444456777644 4455555544444
No 29
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=48.05 E-value=56 Score=30.00 Aligned_cols=41 Identities=24% Similarity=0.197 Sum_probs=31.9
Q ss_pred ccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhcC
Q 045632 456 FNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGR 517 (532)
Q Consensus 456 ~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iGR 517 (532)
.++.+++.=++...+|+|.+--. ..++.+|++.++.|+.|=
T Consensus 164 ~~~~~s~y~~~~t~tTvGyGdi~---------------------P~t~~~~~~~~~~~~~G~ 204 (223)
T 1orq_C 164 KSVFDALWWAVVTATTVGYGDVV---------------------PATPIGKVIGIAVMLTGI 204 (223)
T ss_dssp CSHHHHHHHHHHHHTTCCCCSSC---------------------CCSHHHHHHHHHHHHHHH
T ss_pred CcchhHHHhHHhHHhccCCCCCC---------------------CCCHhHHHHHHHHHHHHH
Confidence 57888888888888999974311 346889999999999873
No 30
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=43.18 E-value=1.4e+02 Score=30.01 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=34.2
Q ss_pred hhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHhcccHHHH
Q 045632 228 QAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPAC 280 (532)
Q Consensus 228 ~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lGgigf~v~ 280 (532)
.++.+|++.|+.+.+|-|+.-.. +-...+.+.++..+.+++|=+-+++.
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~----p~~~~~~~~~l~~~~~l~G~~l~a~~ 141 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRC----VTEECPLAVFMVVVQSIVGCIIDSFM 141 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSE----ECSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhheeeeeeEeecCCCcc----CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999985321 11234667777777777775444443
No 31
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=42.78 E-value=1.2e+02 Score=30.38 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHhcccHHHH
Q 045632 228 QAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPAC 280 (532)
Q Consensus 228 ~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lGgigf~v~ 280 (532)
.++.+|++.|+.+.+|-|+.-. .+-...+.+.++..+.+++|=+-+++.
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~----~p~~~~~~g~~l~~~~~l~G~~l~a~~ 138 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYR----VITDKCPEGIILLLIQSVLGSIVNAFM 138 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSS----CBCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHhhhheeeeeecCCCc----cCcCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998632 222234667777777777775444433
No 32
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=39.53 E-value=54 Score=30.14 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhcCCCCCC-CCCCCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhHHHHH
Q 045632 49 TALSLLGYFLLSVTKPRTH-STDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSM 119 (532)
Q Consensus 49 ~~i~liGalll~l~~~~~~-~~~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG~~~~ 119 (532)
+.+..+++..++......+ +...++.||++-++...||.|.. |....+..++++-.+.+ +.|.++...
T Consensus 141 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyG--di~P~t~~~~~~~~~~~-~~G~~~~~~ 209 (223)
T 1orq_C 141 MLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYG--DVVPATPIGKVIGIAVM-LTGISALTL 209 (223)
T ss_dssp HHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCC--SSCCCSHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCC--CCCCCCHhHHHHHHHHH-HHHHHHHHH
Confidence 3445667777765332111 22358999999999999999976 43334567776554444 444554443
No 33
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=35.28 E-value=60 Score=34.51 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHhhcc-CCccccCccCCCCchhHHHHHHHHhhcCC
Q 045632 349 LNFYQKLVASLFEVVNS-RHTGESVLDLSIISPAILVLFVVMMYLPP 394 (532)
Q Consensus 349 ~~~~~~~~~alFqsvSa-~TaGFs~~~~~~~~~~~~~iliilMfIGg 394 (532)
.++.+++ +-++.+ +|.||. |+..-++..+++.++.|++|-
T Consensus 50 ~~~~~~~----y~~~~t~tTvGyg--d~~p~~~~~~~~~~~~~~~g~ 90 (565)
T 4gx0_A 50 YSFMAGI----YWTITVMTTLGFG--DITFESDAGYLFASIVTVSGV 90 (565)
T ss_dssp CCHHHHH----HHHHHHHTTCCCC--SSCCCSHHHHHHHHHHHHHHH
T ss_pred Cchhhhh----heeeeeeeeecCC--CcCCCCccHHHHHHHHHHHHH
Confidence 3555544 444444 999995 766667777888777777763
No 34
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=34.97 E-value=48 Score=32.86 Aligned_cols=39 Identities=23% Similarity=0.051 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcc-CCccccCccCCCCchhHHHHHHHHhhcCC
Q 045632 354 KLVASLFEVVNS-RHTGESVLDLSIISPAILVLFVVMMYLPP 394 (532)
Q Consensus 354 ~~~~alFqsvSa-~TaGFs~~~~~~~~~~~~~iliilMfIGg 394 (532)
.+.++++-++.+ +|.||. |...-++..+++.++.|++|-
T Consensus 161 ~~~~s~y~~~~t~ttvGyg--d~~p~t~~~~~~~~~~~~~g~ 200 (355)
T 3beh_A 161 SIPQAMWWAVVTLSTTGYG--DTIPQSFAGRVLAGAVMMSGI 200 (355)
T ss_dssp SHHHHHHHHHHHHTTCCCS--SSCCCSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhheeecCCC--CCCCCChhHHHHHHHHHHHHH
Confidence 445666666666 899985 666667778888888887764
No 35
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=34.83 E-value=1.4e+02 Score=29.65 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=31.0
Q ss_pred cHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhcC
Q 045632 457 NVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGR 517 (532)
Q Consensus 457 ~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iGR 517 (532)
++.++++-++..+.|||++ +. ...+..+|++.++.|+.|=
T Consensus 78 s~~~a~y~s~vT~tTVGYG--Di-------------------~P~t~~gr~~~~~~~l~G~ 117 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYG--DM-------------------HPQTVYAHWIATLEIFVGM 117 (321)
T ss_dssp THHHHHHHHHHHHTTCCCC--SS-------------------CBCSHHHHHHHHHHHHHHH
T ss_pred chhheeeeeeEEeccccCC--Cc-------------------CcccHHHHHHHHHHHHHHH
Confidence 7888888888888999964 31 1356889999888888873
No 36
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=33.57 E-value=1e+02 Score=30.54 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=32.3
Q ss_pred CCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhHHHHHHHH
Q 045632 71 PKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSMLEL 122 (532)
Q Consensus 71 ~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG~~~~~~~ 122 (532)
.++.||++-|+..+||.|.. |+...+..+.++- .+..+.|+++..+...
T Consensus 77 ~s~~~a~y~s~vT~tTVGYG--Di~P~t~~gr~~~-~~~~l~G~~~~a~~~g 125 (321)
T 2qks_A 77 AGFGGAFFFSVETLATVGYG--DMHPQTVYAHWIA-TLEIFVGMSSIALATG 125 (321)
T ss_dssp TTHHHHHHHHHHHHTTCCCC--SSCBCSHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred cchhheeeeeeEEeccccCC--CcCcccHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 38999999999999999976 3333455666544 4444556655544333
No 37
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=33.33 E-value=18 Score=38.69 Aligned_cols=44 Identities=14% Similarity=0.326 Sum_probs=31.1
Q ss_pred CCCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhHH
Q 045632 70 DPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVF 116 (532)
Q Consensus 70 ~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG~ 116 (532)
..+|.||++-++-.+||.|.. |...-+..++++-.+++.+ |+++
T Consensus 49 ~~~~~~~~y~~~~t~tTvGyg--d~~p~~~~~~~~~~~~~~~-g~~~ 92 (565)
T 4gx0_A 49 AYSFMAGIYWTITVMTTLGFG--DITFESDAGYLFASIVTVS-GVIF 92 (565)
T ss_dssp CCCHHHHHHHHHHHHTTCCCC--SSCCCSHHHHHHHHHHHHH-HHHH
T ss_pred CCchhhhhheeeeeeeeecCC--CcCCCCccHHHHHHHHHHH-HHHH
Confidence 358999999999999999986 4433455667665555544 4433
No 38
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=30.11 E-value=1.4e+02 Score=29.16 Aligned_cols=41 Identities=7% Similarity=0.127 Sum_probs=31.8
Q ss_pred ccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhcC
Q 045632 456 FNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGR 517 (532)
Q Consensus 456 ~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iGR 517 (532)
.++.+++.=++..++|+|++- . + ..++.+|++.++.|+.|=
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGD-i-------------------~-P~t~~gr~~~~~~~l~G~ 121 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGK-L-------------------I-PIGPLANTLVTLEALCGM 121 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSS-S-------------------C-CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhhheeccCCCC-C-------------------c-CCCHHHHHHHHHHHHHHH
Confidence 578888888888889999752 2 1 356789999999998874
No 39
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=27.99 E-value=2.2 Score=38.38 Aligned_cols=67 Identities=15% Similarity=0.162 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhcCCCCCC-CCCCCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhHHHHH
Q 045632 50 ALSLLGYFLLSVTKPRTH-STDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSM 119 (532)
Q Consensus 50 ~i~liGalll~l~~~~~~-~~~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG~~~~ 119 (532)
++.++++..++......+ +...++.||++-++..+||.|.-=+.+ .+..+.++..+.+ +.|++++.+
T Consensus 44 ~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P--~t~~~r~~~~~~~-l~G~~~~~~ 111 (166)
T 3pjs_K 44 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP--VTLWGRLVAVVVM-VAGITSFGL 111 (166)
T ss_dssp TTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCC--CSSTTTTTTHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCC--CCHhHHHHHHHHH-HHHHHHHHH
Confidence 344556666654221111 223589999999999999999753222 2333443333333 445555443
No 40
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=27.08 E-value=2.5e+02 Score=27.48 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhhcccCccccccCCCccccccChhHHHHHHHHHHHhc
Q 045632 228 QAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGN 274 (532)
Q Consensus 228 ~~~~dalF~avSA~~taGfs~~~~sl~~~~~~~~~~~vi~~lm~lGg 274 (532)
.++.||++.++.+.+|.|+.- +.+ .++...+..++.|+.|-
T Consensus 160 ~~~~~s~y~~~~t~ttvGygd----~~p--~t~~~~~~~~~~~~~g~ 200 (355)
T 3beh_A 160 GSIPQAMWWAVVTLSTTGYGD----TIP--QSFAGRVLAGAVMMSGI 200 (355)
T ss_dssp SSHHHHHHHHHHHHTTCCCSS----SCC--CSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhheeecCCCC----CCC--CChhHHHHHHHHHHHHH
Confidence 468899999999999999852 222 24556666667666664
No 41
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=25.56 E-value=1.4e+02 Score=29.66 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=31.8
Q ss_pred ccHHHHHHHHhcccCccccCCCccCccccCccccccCccccccccCChHHHHHHHHHHHhcC
Q 045632 456 FNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGR 517 (532)
Q Consensus 456 ~~~~~~lFevvSA~~tvGls~G~~~~~~~~~~~~~~~~~~s~~~~l~~~~Klili~lM~iGR 517 (532)
.++.+++.=++..+.|+|++--. ..++.+|++.++.|+.|=
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi~---------------------P~t~~gr~~~~~~~l~G~ 135 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDMH---------------------PQTVYAHAIATLEIFVGM 135 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCC---------------------CCSHHHHHHHHHHHHHHH
T ss_pred CcHHHhHhhhheeeeecCCCCCc---------------------CCCHHHHHHHHHHHHHHH
Confidence 46788888888888999974321 345789999999998874
No 42
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=24.92 E-value=4.7 Score=40.12 Aligned_cols=64 Identities=8% Similarity=0.028 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCcccceeeecccccccCcceeeCCccChHHHHHHHHHHHHhhhHHHHHH
Q 045632 48 FTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEVFMSML 120 (532)
Q Consensus 48 ~~~i~liGalll~l~~~~~~~~~~s~~dAlF~avSa~t~TGls~v~~~~~~~~~q~ii~~Li~iGGlG~~~~~ 120 (532)
++++.++|++.++.. .+.++.||++-++-.+||.|.. |....+..++++..+.+ +.|+++..+.
T Consensus 27 ~~~~~~~~~~~~~~~------e~~~~~~a~y~~~~t~tTvGyG--d~~p~t~~~r~~~~~~~-~~g~~~~~~~ 90 (336)
T 1lnq_A 27 VLAVIIYGTAGFHFI------EGESWTVSLYWTFVTIATVGYG--DYSPSTPLGMYFTVTLI-VLGIGTFAVA 90 (336)
T ss_dssp TTTSHHHHTTTTTTS------SSCCSSTTHHHHHHHHTTCCCS--SCCCCCSSHHHHHTHHH-HTTSTTTTTH
T ss_pred HHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHhhcccCC--CCCCCCcCHHHHHHHHH-HHHHHHHHHH
Confidence 344556788877642 2358999999999999999975 33223455666555544 4555554333
Done!