RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 045632
(532 letters)
>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family. The
proteins of the Trk family are derived from
Gram-negative and Gram-positive bacteria, yeast and
wheat. The proteins of E. coli K12 TrkH and TrkG as well
as several yeast proteins have been functionally
characterized.The E. coli TrkH and TrkG proteins are
complexed to two peripheral membrane proteins, TrkA, an
NAD-binding protein, and TrkE, an ATP-binding protein.
This complex forms the potassium uptake system. This
family is specific for the eukaryotic Trk system
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 800
Score = 318 bits (816), Expect = 1e-99
Identities = 120/365 (32%), Positives = 190/365 (52%), Gaps = 30/365 (8%)
Query: 185 SIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNC 244
+++ LC +VL YFL ++ G L+L +I+ + + V+ KG+ + FT +S F+N
Sbjct: 447 ALKCLCSIVLVYFLGFNILGFVLLLPWINHVKTYSEVVRSKGVSPTWWGFFTAMSAFANL 506
Query: 245 GFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKIT----KREECDYL 300
G T E+M+ F +NS LLLL+I +++GNT +P LR IW+L KI+ KR+E
Sbjct: 507 GLTLTPESMVSFNKNSYLLLLMIWFIIIGNTGFPIFLRLIIWILFKISPDLSKRKESLGF 566
Query: 301 LKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLF 360
L ++ + L + +L T+ G + L++F L+W S +D L+ K++ LF
Sbjct: 567 LLDHPRRCFTLLFPSGATWWLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLF 626
Query: 361 EVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLPAR--NCDEGDSKNC------ 412
+ V++R G +V+DLS + PAI V +++MMY+ + R N E S
Sbjct: 627 QSVSTRTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLAISIRRTNVYEEQSLGLYNEENE 686
Query: 413 -REKEKETKSLLECLAFSQLS----YLAIFIILICITERHKMKQ-DPLNFNVLSITIEVI 466
E E TKS + QLS Y+ + + +ICI E K++ DP NFNV +I EV+
Sbjct: 687 EHEGESSTKSFIGAHLRRQLSFDLWYIFLGLFIICICEGRKIQDPDPPNFNVFNILFEVV 746
Query: 467 SAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKFNMKGG 526
SAYG VG S GYSC G+++ KL++I ++ GR +
Sbjct: 747 SAYGTVGLSLGYSCSNY------------SFSGQFTTLSKLVIIAMLIRGRHRGLPYALD 794
Query: 527 KAWKL 531
+A L
Sbjct: 795 RAIIL 799
Score = 68.5 bits (167), Expect = 4e-12
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 29 FIFLAVKYIMNPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSS 88
LA + +H Y +L+++ LL P +P D F + A T
Sbjct: 34 CRPLAKYVFPFFIAVHYFYIISLTIIASILL---YPS-TVKNPAYIDALFLAAGALTQGG 89
Query: 89 MGTVEMEVFSNSQLIIMTILMLAGGEVFMS 118
+ TV+M S Q I++ ILML +F+
Sbjct: 90 LNTVDMNDLSLYQQIVLYILMLLTTPIFVH 119
>gnl|CDD|217009 pfam02386, TrkH, Cation transport protein. This family consists of
various cation transport proteins (Trk) and V-type
sodium ATP synthase subunit J or translocating ATPase J
EC:3.6.1.34. These proteins are involved in active
sodium up-take utilising ATP in the process. TrkH a
member of the family from E. coli is a hydrophobic
membrane protein and determines the specificity and
kinetics of cation transport by the TrK system in E.
coli.
Length = 334
Score = 125 bits (315), Expect = 7e-32
Identities = 78/357 (21%), Positives = 135/357 (37%), Gaps = 62/357 (17%)
Query: 185 SIRYLCYVVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNC 244
S++ L ++L +F + + G + +I +P + G ++F +S F+N
Sbjct: 9 SLKRLMKIILSFFKTIEIIGFVALSIWILYVPLYSACIVLLGGMPLFDAIFHSISAFNNG 68
Query: 245 GFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKITKREECDYLLKNY 304
GF T++++ F N + L+ ++LG T +P LR IW+ KK ++E LK
Sbjct: 69 GFSLTSDSIGSFNNNPFVELVTSFLIILGGTGFPVHLRLLIWIRKK---KKELSLFLK-- 123
Query: 305 REIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVN 364
DH F ++ + LE + L +++ + F+V +
Sbjct: 124 -----DHP----------RRTFLLLLPGFITILLLEVLVVLLASLPLGSRILNAFFQVSS 168
Query: 365 SRHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLPARNCDEGDSKNCRE---------- 414
+R G S +DLS +SPA VL +++M++ K
Sbjct: 169 TRTAGFSTIDLSQLSPATKVLLMLLMFIGGSPGSTAGGI------KTITFAVILKALNWI 222
Query: 415 ------KEKETKSL----LECLAFSQLSYLAIFIILICITERHKMKQDPLNFNVLSITIE 464
E L + LICI E + + E
Sbjct: 223 NRAFLPGAVEPVKFGGRHLREQLIRDAWAFFLLYFLICIFEGLLLSLTGYDP-FFDSLFE 281
Query: 465 VISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIKKF 521
V+SA+G VG S G + P +S + GKL+LI +M GR++
Sbjct: 282 VVSAFGTVGLSLGIT-----TPNLS----------LSPDLGKLVLIALMIIGRLEIL 323
Score = 37.7 bits (88), Expect = 0.013
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 41 LMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSA-------ATDSSMGTVE 93
+ + F ALS+ ++ + FD F S+SA T S+G+
Sbjct: 22 KTIEIIGFVALSIWILYVPLYSACIVLLGGMPLFDAIFHSISAFNNGGFSLTSDSIGS-- 79
Query: 94 MEVFSNSQLI--IMTILMLAGGEVFMSMLELF-FIKSKLPKHNDHLLITPS 141
F+N+ + + + L++ GG F L L +I+ K + + L P
Sbjct: 80 ---FNNNPFVELVTSFLIILGGTGFPVHLRLLIWIRKKKKELSLFLKDHPR 127
>gnl|CDD|223246 COG0168, TrkG, Trk-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 499
Score = 67.7 bits (166), Expect = 6e-12
Identities = 60/306 (19%), Positives = 118/306 (38%), Gaps = 55/306 (17%)
Query: 233 SLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWV--LKK 290
++F +S F+N GF + ++ F + + L++ ++LG +P R IW+ LK
Sbjct: 202 AIFHSMSAFNNGGFSTHDASIGYFNGSPLINLIITILIILGGIGFPVHYRLLIWIKSLKF 261
Query: 291 ITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLN 350
++ + + L L + G + + L+ + + L
Sbjct: 262 LSLDPKLRFTL------------------TLLLLATGLLALFLLELNNPDGGYSFFLSLR 303
Query: 351 --FYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPY------------- 395
F+Q V+++F+ +R TG + +DLS PA LVL +++M++
Sbjct: 304 DAFFQS-VSAIFQTGFTR-TGFNTVDLSQWPPATLVLLMLLMFIGGSPGSTAGGIKTTRF 361
Query: 396 -TSFLPARNC--DEGDSKNCREKEKETKSLLECLAFSQLSYLAIFIILICITERHKMKQD 452
+ G + +++ E L++ ++++++ I +
Sbjct: 362 AVLLKALKRELRRLGHPNAVISVKIFGRAIDEDTIRKALAFFFLYLLILIIGALILILTG 421
Query: 453 PLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILV 512
F + EV+SA+G VG S G F L KL+LI +
Sbjct: 422 YDPF--IDALFEVVSAFGTVGLSLGI---------TGDLASNFAL----PPLAKLVLIAL 466
Query: 513 MFFGRI 518
M GR+
Sbjct: 467 MLIGRL 472
Score = 30.0 bits (68), Expect = 3.3
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 74 FDVFFTSVSAATDS--SMGTVEMEVFSNSQLI--IMTILMLAGGEVFMSMLELFFIKSKL 129
FD F S+SA + S + F+ S LI I+TIL++ GG F L L
Sbjct: 200 FDAIFHSMSAFNNGGFSTHDASIGYFNGSPLINLIITILIILGGIGFPVHYRLLIWIKSL 259
Query: 130 PK 131
Sbjct: 260 KF 261
Score = 30.0 bits (68), Expect = 3.7
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 25 FMSTFIFLAVKYIMNPLMLH--LCYFTALSL-----LGYFLLSVTKPRTHSTDPKTF-DV 76
F + L + L L L + L L L FLL + P + + D
Sbjct: 246 FPVHYRLLIWIKSLKFLSLDPKLRFTLTLLLLATGLLALFLLELNNPDGGYSFFLSLRDA 305
Query: 77 FFTSVSAATDS-----SMGTVEMEVFSNSQLIIMTILMLAGG 113
FF SVSA + TV++ + + L+++ +LM GG
Sbjct: 306 FFQSVSAIFQTGFTRTGFNTVDLSQWPPATLVLLMLLMFIGG 347
>gnl|CDD|233196 TIGR00933, 2a38, potassium uptake protein, TrkH family. The
proteins of the Trk family are derived from
Gram-negative and Gram-positive bacteria, yeast and
wheat. The proteins of E. coli K12 TrkH and TrkG as well
as several yeast proteins have been functionally
characterized.The E. coli TrkH and TrkG proteins are
complexed to two peripheral membrane proteins, TrkA, an
NAD-binding protein, and TrkE, an ATP-binding protein.
This complex forms the potassium uptake system
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 390
Score = 59.6 bits (145), Expect = 1e-09
Identities = 59/307 (19%), Positives = 112/307 (36%), Gaps = 68/307 (22%)
Query: 232 FSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKI 291
++F +S F+N GF +++ I + + + L++ ++LG L F + +
Sbjct: 131 DAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGG------LGFTVHYDVYL 184
Query: 292 TKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNF 351
R+ L + + F + + ++F LE + + +F
Sbjct: 185 LLRKRVFKLSLDTK--------------VRLFVTFLLLAIGFILFLLLERGNT-LYSYSF 229
Query: 352 YQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYL------------------- 392
L+++ F+ R G S +D + + A LVL +++M++
Sbjct: 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKTTTFAIL 289
Query: 393 --PPYTSFLPARNCDEGDSKNCREKEKETKSLLECLAFSQLSYLAIFIILICITERHKMK 450
Y + S+ + K++L + + I L+ I E
Sbjct: 290 LKQVYREIRRGIHPRIIFSR-RIGGKTIDKAILI--SVWSFFLVFALIFLLSILELISSG 346
Query: 451 QDPLNFNVLSITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILI 510
D L+ EV+SA+G VG S G + + GKLILI
Sbjct: 347 YDF-----LTSLFEVVSAFGTVGLSVGLTT------------------ANLPDAGKLILI 383
Query: 511 LVMFFGR 517
++MF GR
Sbjct: 384 VLMFIGR 390
Score = 30.3 bits (69), Expect = 2.3
Identities = 11/66 (16%), Positives = 23/66 (34%)
Query: 48 FTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTI 107
A+ + + LL + F S + T++ + L+++ +
Sbjct: 207 LLAIGFILFLLLERGNTLYSYSFGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLL 266
Query: 108 LMLAGG 113
LM GG
Sbjct: 267 LMFIGG 272
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS. This
protein, TorS, is part of a regulatory system for the
torCAD operon that encodes the pterin molybdenum
cofactor-containing enzyme trimethylamine-N-oxide (TMAO)
reductase (TorA), a cognate chaperone (TorD), and a
penta-haem cytochrome (TorC). TorS works together with
the inducer-binding protein TorT and the response
regulator TorR. TorS contains histidine kinase ATPase
(pfam02518), HAMP (pfam00672), phosphoacceptor
(pfam00512), and phosphotransfer (pfam01627) domains and
a response regulator receiver domain (pfam00072) [Signal
transduction, Two-component systems].
Length = 968
Score = 29.4 bits (66), Expect = 6.2
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 309 YDHLLSRSRSCFLAITVFGFIIVQLVIF 336
LS ++ L + G +I+ +++
Sbjct: 322 LLMTLSVAQFGLLITGMLGLVILVFIMW 349
>gnl|CDD|238140 cd00228, eu-GS, Eukaryotic Glutathione Synthetase (eu-GS);
catalyses the production of glutathione from
gamma-glutamylcysteine and glycine in an ATP-dependent
manner. Belongs to the ATP-grasp superfamily.
Length = 471
Score = 28.9 bits (65), Expect = 8.8
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 142 SKPTKSVEQIELNSICCS-----EKTD--HISFDNKNNKNKNN--NTILKHNSIRYLC 190
TK ++QIE+N+I S + H + +K N I +N+++ +
Sbjct: 128 KDGTKGLKQIEINTISSSFGGLSSRVTELHRYVLSALGYSKGLDSNRIPSNNAVKGIA 185
>gnl|CDD|177256 MTH00213, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 239
Score = 28.3 bits (63), Expect = 9.8
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Query: 191 YVVLGY------FLIVHVGGLCLV-LWYISLIP-SAKHVLEQKGLQAET 231
++VLG FLIV+VG +C++ L+ I +IP AK KG + E
Sbjct: 41 FIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPGGAKGFKPTKGNKKEK 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.421
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,483,442
Number of extensions: 2577403
Number of successful extensions: 3139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3117
Number of HSP's successfully gapped: 56
Length of query: 532
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 431
Effective length of database: 6,457,848
Effective search space: 2783332488
Effective search space used: 2783332488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.3 bits)