RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 045632
(532 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 2e-07
Identities = 50/359 (13%), Positives = 96/359 (26%), Gaps = 135/359 (37%)
Query: 56 YFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSMGTVEMEVFSNSQLIIMTILMLAGGEV 115
+F+ S + + F + T+ A +
Sbjct: 27 FFIASQLQ-----------EQFNKILPEPTEG----------------------FAADDE 53
Query: 116 FMSMLELF-----FIKSKLPKHN----DHLLITPSSKPTKSVEQIE---L--NSICCSEK 161
+ EL ++ S + D +L + + E L N I
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVL-------NLCLTEFENCYLEGNDI----- 101
Query: 162 TDH---ISFDNKNNKNKNNNTILKHNSIRYLCYVVLGYFLIVHVGGLCLVLWYIS-LIPS 217
H +N+ T++K + + Y + S L +
Sbjct: 102 --HALAAKLLQENDT-----TLVKTKEL------IKNYITARIMAKRPFDKKSNSALFRA 148
Query: 218 AKHVLEQKGLQAETFSLF--------------TIVSTFSNCGFVPTNENMIVFKENSGLL 263
+G A+ ++F + T+ V + K ++ L
Sbjct: 149 V-----GEG-NAQLVAIFGGQGNTDDYFEELRDLYQTYH--VLVGD-----LIKFSAETL 195
Query: 264 LLLIPQVLLGNTLYPACLRFAIWVLKKITKREECDYL--------------LKNY----R 305
LI L ++ L W L+ + + DYL L +Y +
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEW-LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 306 EIGYDHLLSRSRSCFLAITVFGF-IIVQLVIFCSLEWNSEAMDDLNFYQ---KLVASLF 360
+G+ RS T ++ + I + W S F+ K + LF
Sbjct: 255 LLGFTP--GELRSYLKGATGHSQGLVTAVAIAETDSWES-------FFVSVRKAITVLF 304
Score = 43.9 bits (103), Expect = 1e-04
Identities = 48/291 (16%), Positives = 85/291 (29%), Gaps = 105/291 (36%)
Query: 216 PSAKHVLEQ---KGLQAETFSLFTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIPQVLL 272
+A+ V + FS+ IV +N P I F G + ++
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIV--INN----PV-NLTIHFGGEKGKRIRENYSAMI 1692
Query: 273 GNTLYPACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFL--AITVFGFII 330
T+ L+ +KI K E + +Y LLS ++ F A+T+
Sbjct: 1693 FETIVDGKLKT-----EKIFK--EINEHSTSYTFRSEKGLLSATQ--FTQPALTL----- 1738
Query: 331 VQLVIFCSLEWNSEAMDDLNFYQKLVA--SLFEVVNSRHTGE--------SVLDLSIISP 380
++ F L+ S+ + + A SL GE V+ +
Sbjct: 1739 MEKAAFEDLK--SKGLIPADAT---FAGHSL---------GEYAALASLADVMSIE---S 1781
Query: 381 AILVLF-------------------VVMMYLPPYTSFLPARNCDEGDSKNCREKEKETKS 421
+ V+F M+ + P + A E K T
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP--GRVAASFSQEALQYVVERVGKRTGW 1839
Query: 422 LLECLAFSQLSYLAIFIILICITERHKMKQDPLNFNVLSITIEVISAYGNV 472
L+E +N+NV + V + G++
Sbjct: 1840 LVE----------------------------IVNYNVENQQY-VAA--GDL 1859
Score = 42.0 bits (98), Expect = 5e-04
Identities = 40/255 (15%), Positives = 78/255 (30%), Gaps = 68/255 (26%)
Query: 180 ILKHNSIRYLCYVVLGYFLI---VHVGGLCLVLW--YISLIPSAKHVLEQKGLQAETFSL 234
L H S+ + L+ + L + ++P E +
Sbjct: 10 TLSHGSLEH-------VLLVPTASFF--IASQLQEQFNKILPEPTEGFAA---DDEPTTP 57
Query: 235 FTIVSTFSNCGFVPTNENMIVFKENSGLLLLLIP----QVLLGNTLYPACLRFAIWVLKK 290
+V F G+V + + +L L + L GN ++ +
Sbjct: 58 AELVGKFL--GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 291 ITKREECDYLLKNY---REIGYDHLLSRSRSCFLA---------ITVFGFIIVQLVIFCS 338
+ K +E L+KNY R + +S S + +FG Q
Sbjct: 116 LVKTKE---LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG---Q------ 163
Query: 339 LEWNSEA-MDDL----NFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFV----VM 389
N++ ++L Y LV L + E++ +L + +F ++
Sbjct: 164 --GNTDDYFEELRDLYQTYHVLVGDLIKFS-----AETLSELIRTTLDAEKVFTQGLNIL 216
Query: 390 MYL-----PPYTSFL 399
+L P +L
Sbjct: 217 EWLENPSNTPDKDYL 231
Score = 31.2 bits (70), Expect = 1.2
Identities = 63/418 (15%), Positives = 122/418 (29%), Gaps = 130/418 (31%)
Query: 46 CYFTALSLLGYFLLSVTKPRTHSTDPKTFDVFFTSVSAATDSSM------GTV-----EM 94
Y TA + +P ++ F +V + G E+
Sbjct: 125 NYITARIMAK-------RPFDKKSNSA----LFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 95 -EVFSNSQLIIMTILMLAGGEVFMSMLELFFIKSKLPKHNDH------LLITPSSKPTK- 146
+++ +++ ++ + + EL K L PS+ P K
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETL----SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 147 -------SVEQIELNSICCSEKTDHISFDNKNNKNKNNNTILKHNSIRYLCYVVLGYFLI 199
S I + + T + + + G
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLL-------GFTPGELRSYLK---------G--AT 271
Query: 200 VHVGGLCLVL-------W--YISLIPSAKHVLEQKGLQA-ETFSLFTIVSTFS------N 243
H GL + W + + A VL G++ E + ++ + N
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 244 CGFVPTNENM-------------IVFKENSGL------LLLLI--PQ--VLLGN--TLYP 278
G VP+ M V K NS L + L+ + V+ G +LY
Sbjct: 332 EG-VPS--PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 279 ACLRFAIWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITV-F--------GFI 329
L L+K D I + + + FL + F +
Sbjct: 389 LNLT-----LRKAKAPSGLD-----QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 330 IVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFV 387
I + ++ ++ +N++ D+ V F+ + R S+ + I+ I+ L V
Sbjct: 439 INKDLVKNNVSFNAK---DIQIP---VYDTFDGSDLRVLSGSISE-RIV-DCIIRLPV 488
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 8e-06
Identities = 48/328 (14%), Positives = 90/328 (27%), Gaps = 110/328 (33%)
Query: 39 NPLMLHLCYFTALSLLGYFLLSVTKPRTHSTDPKTFD----VFFTSVSAATDSSMGTVE- 93
NP LS++ + T+D V ++ +SS+ +E
Sbjct: 326 NPR--------RLSIIAESI---------RDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 94 ---------MEVFSNSQLIIMTILML----AGGEVFMSMLELFFIKSKLPKHND------ 134
+ VF S I +L L M ++ S + K
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 135 HLLITPSSKPTKSVEQIELNSICCSEKTDH---ISFDNKNNKNKNNNTILKHNSIRYLCY 191
+ +EL +E H + N +++ I +
Sbjct: 429 PSI------------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD------ 470
Query: 192 VVLGYFLIVHVGGLCLVLWYISLIPSAKHVLEQKGLQAETFSLFTIVSTFSNCGFVPTNE 251
YF +I H L+ E +LF +V F + F+ E
Sbjct: 471 ---QYF-----------YSHI-----GHH-LKNIE-HPERMTLFRMV--FLDFRFL---E 504
Query: 252 NMIVFKENSGLLLLLIPQVLLGNTLYPACLRFAIWVLKKITKREEC-DYLLKNYRE--IG 308
I + +L NTL L+F I + + L+ +
Sbjct: 505 QKI---RHDSTAWNASGSIL--NTL--QQLKF---YKPYICDNDPKYERLVNAILDFLPK 554
Query: 309 YDHLLSRSRSCFLAITVFGFIIVQLVIF 336
+ L S+ ++++ +
Sbjct: 555 IEENLICSKYT---------DLLRIALM 573
Score = 32.1 bits (72), Expect = 0.57
Identities = 57/376 (15%), Positives = 114/376 (30%), Gaps = 105/376 (27%)
Query: 164 HISFDNKNNKNKNNNTILKHNSIRYL----CYVVLGYFLIVHVGGLCLVLWYISLIPSA- 218
H+ F+ ++ + + IL ++ C V + +
Sbjct: 6 HMDFETGEHQYQYKD-ILSVFEDAFVDNFDCKDVQDMPKSI--------------LSKEE 50
Query: 219 -KHVLEQKGLQAETFSLFTIVSTFSNCG---FVPT----NENMIV------FKENSGLLL 264
H++ K + T LF + + FV N ++ ++ S +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 265 LLIPQVLLGNTLYPACLRFA---IWVLKKITKREECDYLLKNYREIGYDHLLSRSRSCFL 321
+ I Q + LY FA + L+ K + L+ + + D +L ++ +
Sbjct: 111 MYIEQR---DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-V 166
Query: 322 AITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNSRHTGESVLDLSIISPA 381
A+ V VQ + + W LN + ++ E+VL++
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW-------LNL------------KNCNSPETVLEM------ 201
Query: 382 ILVLFVVMMYLPPYTSFLPARNCDEGDSKNCREKEKETKSLLECLAFSQLSYLAIFIIL- 440
+ L + P +TS D S N + + ++ L L Y ++L
Sbjct: 202 LQKLLYQID--PNWTS-----RSDH--SSNIKLRIHSIQAELRRL-LKSKPYENCLLVLL 251
Query: 441 ----------------ICITERHKMKQDPLNFNVLSITIEVISAYGNVGFSTGYSCERQL 484
I +T R K D L+ T + + ++ + L
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT---TTHISLDHHSMTLTPDEVKSLLL 308
Query: 485 K---------PEISCK 491
K P
Sbjct: 309 KYLDCRPQDLPREVLT 324
Score = 29.4 bits (65), Expect = 3.6
Identities = 28/241 (11%), Positives = 70/241 (29%), Gaps = 79/241 (32%)
Query: 288 LKKITKREECDYLLKNYREIGYDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMD 347
K I +EE D+++ + +S + F + +VQ + L N
Sbjct: 42 PKSILSKEEIDHIIMS------KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN----- 90
Query: 348 DLNFYQKLVASLFEVVNSRHTGESVLDLSIISPAILVLFVVMMYLPPYTSFLPARNCDEG 407
Y+ L++ + P+ ++ R+
Sbjct: 91 ----YKFLMSPIKTEQR--------------QPS-----------MMTRMYIEQRDRLYN 121
Query: 408 D----SKNCREKEKETKSLLECLAFSQLSYLAIFIILICITERHKM----KQDPLNFNVL 459
D +K + + L + L +L A +++ + K +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQAL--LELRP-AKNVLI------DGVLGSGKT------WV 166
Query: 460 SITIEVISAYGNVGFSTGYSCERQLKPEISCKDKWFGLVGKWSNGGKLILILVMFFGRIK 519
++V +Y ++ ++ K W + ++ ++ +L +I
Sbjct: 167 --ALDVCLSYK-------------VQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQID 210
Query: 520 K 520
Sbjct: 211 P 211
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.25
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 126 KSKLPKHNDHL-LITPSSKPTKSVE-QIE 152
K L K L L S P +++ +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>1yle_A Arginine N-succinyltransferase, alpha chain; structural genomics,
acyltransferase, arginine metabolism, protein structure
initiative; 1.70A {Pseudomonas aeruginosa} SCOP:
d.108.1.8
Length = 342
Score = 29.3 bits (66), Expect = 2.9
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 299 YLLKNYREIGYDHLLSRSRSCFLA 322
Y+ ++ + Y L SR R F+A
Sbjct: 129 YVQRDLVQSVYAELNSRGRLLFMA 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.421
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,652,887
Number of extensions: 434787
Number of successful extensions: 819
Number of sequences better than 10.0: 1
Number of HSP's gapped: 816
Number of HSP's successfully gapped: 13
Length of query: 532
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 434
Effective length of database: 3,965,535
Effective search space: 1721042190
Effective search space used: 1721042190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.8 bits)