RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 045632
         (532 letters)



>d1ylea1 d.108.1.8 (A:1-338) Arginine N-succinyltransferase, alpha
           chain, AstA {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 338

 Score = 28.9 bits (65), Expect = 1.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 299 YLLKNYREIGYDHLLSRSRSCFLA 322
           Y+ ++  +  Y  L SR R  F+A
Sbjct: 127 YVQRDLVQSVYAELNSRGRLLFMA 150


>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 28.6 bits (63), Expect = 2.0
 Identities = 26/198 (13%), Positives = 58/198 (29%), Gaps = 9/198 (4%)

Query: 253 MIVFKENSGLLLLLIPQV---LLGNTLYPACLRFAIWVLKKITKREECDYLLKNYRE-IG 308
           M   K    + ++ +                L  A+  +  I   +  +YL +  R+ + 
Sbjct: 71  MNYAKSQPDMAIMAVNSFVKDCEDPNPLIRAL--AVRTMGCIRVDKITEYLCEPLRKCLK 128

Query: 309 YDHLLSRSRSCFLAITVFGFIIVQLVIFCSLEWNSEAMDDLNFYQKLVASLFEVVNSRHT 368
            +    R  +      +       +     L+   + + D N      A       S   
Sbjct: 129 DEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESH 188

Query: 369 GESVLDLSIISPAILVLFVVMMYLPPYTSFLPARNCDEGDSKNCREKEKETKSLLECL-- 426
             S L L +    I  L   +     +            + K+ RE +   + +   L  
Sbjct: 189 PNSNL-LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSH 247

Query: 427 AFSQLSYLAIFIILICIT 444
           A S +   A+ +++  + 
Sbjct: 248 ANSAVVLSAVKVLMKFLE 265


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,898,174
Number of extensions: 85468
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 4
Length of query: 532
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 442
Effective length of database: 1,171,896
Effective search space: 517978032
Effective search space used: 517978032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)