BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045633
(794 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 109/277 (39%), Gaps = 48/277 (17%)
Query: 24 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNL 83
+++ GM G GK+ LA A D ++E C S I K GL L NL
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNL 202
Query: 84 ----GELNSLLEYIHTSI-------------KGKKFFLILDDVWTDDHSKWEPFHNCLMN 126
+ S + + +I K + LILDDVW +P+ +
Sbjct: 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW-------DPWVLKAFD 255
Query: 127 GLCGSRILVTTRKETVA-RMMESTDVISIKE-LSEHECWSLFKRFAFSGRSPTDCEQLEE 184
C +IL+TTR ++V +M V+ ++ L + + F + E L
Sbjct: 256 NQC--QILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPA 308
Query: 185 IGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWQL--ILNSEMWQLE-----DFEKNLLAP 237
I+ +CKG PL IG+LLR R + L + N + ++ D+E L
Sbjct: 309 EAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEA-LDEA 367
Query: 238 LQLSYNDLPPEIKRCFLYCVVFPKDYDLDKGELVRLW 274
+ +S L +IK + + KD + L LW
Sbjct: 368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 404
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 112/271 (41%), Gaps = 36/271 (13%)
Query: 24 ISLVGMGGIGKTTLAQFAYNDKDVIEN-FDKRI-WVCVSDPFDEFRIAKAII-------- 73
+++ GM G GK+ LA A D ++E F + WV V + K
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 209
Query: 74 EGLEGSLP-NLGELNSLLEYIHTSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSR 132
E LP N+ E L + K + LILDDVW D + F + C +
Sbjct: 210 ESFSQRLPLNIEEAKDRLRILMLR-KHPRSLLILDDVW--DSWVLKAF-----DSQC--Q 259
Query: 133 ILVTTRKETVA-RMMESTDVISIKE-LSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIV 190
IL+TTR ++V +M V+ ++ L + + + F ++ L E I+
Sbjct: 260 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA-----DLPEQAHSII 314
Query: 191 GKCKGLPLAAKTIGSLLRFKKTREEWQL--ILNSEMWQLE-----DFEKNLLAPLQLSYN 243
+CKG PL IG+LLR R E+ L + N + ++ D+E L + +S
Sbjct: 315 KECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEA-LDEAMSISVE 373
Query: 244 DLPPEIKRCFLYCVVFPKDYDLDKGELVRLW 274
L +IK + + KD + L LW
Sbjct: 374 MLREDIKDYYTDLSILQKDVKVPTKVLCILW 404
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 108/277 (38%), Gaps = 48/277 (17%)
Query: 24 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNL 83
+++ GM G GK+ LA A D ++E C S I K GL L NL
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEG-------CFSGGVHWVSIGKQDKSGLLMKLQNL 209
Query: 84 ----GELNSLLEYIHTSI-------------KGKKFFLILDDVWTDDHSKWEPFHNCLMN 126
+ S + + +I K + LILDDVW +P+ +
Sbjct: 210 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW-------DPWVLKAFD 262
Query: 127 GLCGSRILVTTRKETVA-RMMESTDVISIKE-LSEHECWSLFKRFAFSGRSPTDCEQLEE 184
C +IL+TT ++V +M V+ ++ L + + F + E L
Sbjct: 263 NQC--QILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPA 315
Query: 185 IGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWQL--ILNSEMWQLE-----DFEKNLLAP 237
I+ +CKG PL IG+LLR R + L + N + ++ D+E L
Sbjct: 316 EAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEA-LDEA 374
Query: 238 LQLSYNDLPPEIKRCFLYCVVFPKDYDLDKGELVRLW 274
+ +S L +IK + + KD + L LW
Sbjct: 375 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 411
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 111/277 (40%), Gaps = 48/277 (17%)
Query: 24 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNL 83
+++ GM G GK+ LA A D ++E C + K GL L NL
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEG-------CFPGGVHWVSVGKQDKSGLLMKLQNL 208
Query: 84 ----GELNSLLEYIHTSI-------------KGKKFFLILDDVWTDDHSKWEPFHNCLMN 126
+ S + + +I K + LILDDVW D + F +
Sbjct: 209 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW--DSWVLKAF-----D 261
Query: 127 GLCGSRILVTTRKETVA-RMMESTDVISIKE-LSEHECWSLFKRFAFSGRSPTDCEQLEE 184
C +IL+TTR ++V +M V+ ++ L + + + F ++ L E
Sbjct: 262 SQC--QILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKA-----DLPE 314
Query: 185 IGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWQL--ILNSEMWQLE-----DFEKNLLAP 237
I+ +CKG PL IG+LLR R E+ L + N + ++ D+E L
Sbjct: 315 QAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEA-LDEA 373
Query: 238 LQLSYNDLPPEIKRCFLYCVVFPKDYDLDKGELVRLW 274
+ +S L +IK + + KD + L LW
Sbjct: 374 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW 410
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 23/102 (22%)
Query: 402 GLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSSVEELPETCCELLNLQTL 461
G+FD LT L L D G T+ + L+HL+ L + CC
Sbjct: 82 GVFDSLTQLTVL---DLGTNQLTVLPSAVFDRLVHLKELFM---------CCN------- 122
Query: 462 DCLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNG-FERLTGL 502
L LP+GI +L +L HL D + +P+G F+RL+ L
Sbjct: 123 ---KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
>pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From
Plasmodium Falciparum
pdb|2C0D|B Chain B, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From
Plasmodium Falciparum
Length = 221
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 387 FDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHL 437
++V D S A RGL + D+ C+R + D +G E+ R ++++IH+
Sbjct: 136 YNVLYDNSFALRGL-FIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIHV 185
>pdb|3UWR|A Chain A, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Strain 104
pdb|3UWR|B Chain B, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Strain 104
pdb|3UWR|C Chain C, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Strain 104
pdb|3UWR|D Chain D, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Avium Strain 104
Length = 286
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 46 DVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKKFFLI 105
D++++ D+RI D D + A+ G+E LG L+ ++ G+K I
Sbjct: 69 DLVKDLDRRIVTAQVDVRDFEALKSAVDSGVE----QLGRLDIIVANAGVGTDGRKLHKI 124
Query: 106 LDDVWTD 112
D+VW D
Sbjct: 125 RDNVWQD 131
>pdb|1C7I|A Chain A, Thermophylic Pnb Esterase
Length = 489
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 190 VGKCKGLPLAAKTIGSLLRFKKTR--EEWQLILNSEMWQLEDFEKNLLAPLQLSYNDLPP 247
V K KG+P A +G RFK E W+ +L++ ++ + + L L LSY +LP
Sbjct: 21 VHKWKGIPYAKPPVGQW-RFKAPEPPEVWEDVLDATVYGPVCPQPSDL--LSLSYKELPR 77
Query: 248 EIKRCFLYCVVFPKD 262
+ + C LY VF D
Sbjct: 78 QSEDC-LYVNVFAPD 91
>pdb|1C7J|A Chain A, Pnb Esterase 56c8
Length = 489
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 190 VGKCKGLPLAAKTIGSLLRFKKTR--EEWQLILNSEMWQLEDFEKNLLAPLQLSYNDLPP 247
V K KG+P A +G RFK E W+ +L++ + + + L L LSY +LP
Sbjct: 21 VHKWKGIPYAKPPVGQW-RFKAPEPPEVWEDVLDATAYGPVCPQPSDL--LSLSYTELPR 77
Query: 248 EIKRCFLYCVVFPKD 262
+ + C LY VF D
Sbjct: 78 QSEDC-LYVNVFAPD 91
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 21/144 (14%)
Query: 626 ASLDKLKRLDLAFCPRCEIMP-PLGK---------LPSLEILRIAEMVSVKKVGDEFLGI 675
ASL++L+ L + CP +P PL L +L+ LR+ E ++ + +
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANL 205
Query: 676 GIRDHNHIHGTFSSS---SVVAFPKLEKLDLWIMLQLEEWD--FGKEDITIMPQIKSLMI 730
I + S+ ++ PKLE+LDL L + FG +K L++
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-----PLKRLIL 260
Query: 731 FSCEKLKSLPDQLLRSTTLESLEI 754
C L +LP + R T LE L++
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 357 KLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIE 416
KL +L+L P +FD KL SL + +Q R +G FD+LT L+ LK++
Sbjct: 134 KLTYLSLGYNELQSLPKGVFD--KLTSLKELRLYNNQ--LKRVPEGAFDKLTELKTLKLD 189
Query: 417 DFGLGDKTIEIPRG-LENLIHLRYLQLSSVEELPETC 452
+ L +P G ++L L+ LQL +E P C
Sbjct: 190 NNQLK----RVPEGAFDSLEKLKMLQL---QENPWDC 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,073,129
Number of Sequences: 62578
Number of extensions: 1031253
Number of successful extensions: 2446
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2432
Number of HSP's gapped (non-prelim): 18
length of query: 794
length of database: 14,973,337
effective HSP length: 107
effective length of query: 687
effective length of database: 8,277,491
effective search space: 5686636317
effective search space used: 5686636317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)