Query 045633
Match_columns 794
No_of_seqs 406 out of 3257
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.8E-75 6E-80 658.6 35.5 491 2-510 166-675 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.3E-62 2.8E-67 589.0 45.6 666 3-761 193-907 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3E-42 6.5E-47 355.3 13.8 275 2-283 4-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 4.5E-24 9.8E-29 257.7 18.3 386 356-790 140-561 (968)
5 PLN00113 leucine-rich repeat r 99.9 3.7E-24 8.1E-29 258.5 17.2 387 355-790 92-513 (968)
6 KOG0444 Cytoskeletal regulator 99.9 9.8E-26 2.1E-30 230.4 -7.1 339 356-762 32-377 (1255)
7 KOG4194 Membrane glycoprotein 99.9 4.9E-23 1.1E-27 209.6 3.9 365 354-791 76-455 (873)
8 KOG0472 Leucine-rich repeat pr 99.8 8.5E-24 1.8E-28 205.8 -7.3 141 358-508 70-214 (565)
9 KOG0444 Cytoskeletal regulator 99.8 3.5E-23 7.6E-28 212.0 -7.1 333 354-754 53-393 (1255)
10 PLN03210 Resistant to P. syrin 99.8 1E-19 2.2E-24 219.5 18.5 328 372-761 581-944 (1153)
11 KOG4194 Membrane glycoprotein 99.8 6.6E-21 1.4E-25 194.2 3.5 338 354-756 100-448 (873)
12 KOG0472 Leucine-rich repeat pr 99.8 1.4E-21 3.1E-26 190.4 -6.8 139 359-507 48-190 (565)
13 KOG0618 Serine/threonine phosp 99.8 5.5E-21 1.2E-25 205.5 -8.8 368 363-759 5-442 (1081)
14 KOG0618 Serine/threonine phosp 99.6 1E-16 2.3E-21 173.0 -3.3 388 358-786 47-510 (1081)
15 PRK15387 E3 ubiquitin-protein 99.5 1.7E-13 3.8E-18 153.3 13.2 252 409-760 202-458 (788)
16 PRK04841 transcriptional regul 99.4 1.5E-11 3.2E-16 148.5 25.3 287 3-332 19-332 (903)
17 PRK15387 E3 ubiquitin-protein 99.4 1.6E-12 3.6E-17 145.6 12.2 255 359-740 204-462 (788)
18 PRK15370 E3 ubiquitin-protein 99.4 6.8E-13 1.5E-17 149.7 7.7 86 409-506 179-268 (754)
19 PRK15370 E3 ubiquitin-protein 99.3 2.8E-12 6E-17 144.9 8.1 222 358-671 180-406 (754)
20 KOG0617 Ras suppressor protein 99.3 1.9E-13 4.1E-18 118.4 -4.2 139 354-500 54-196 (264)
21 KOG4237 Extracellular matrix p 99.2 4.7E-13 1E-17 131.5 -3.0 129 367-506 57-194 (498)
22 COG2909 MalT ATP-dependent tra 99.2 1.3E-09 2.9E-14 118.6 22.1 292 3-334 24-340 (894)
23 TIGR03015 pepcterm_ATPase puta 99.2 8.9E-10 1.9E-14 112.2 19.4 183 20-207 42-242 (269)
24 PRK00411 cdc6 cell division co 99.2 5.8E-09 1.3E-13 112.6 25.3 304 2-321 38-374 (394)
25 KOG4658 Apoptotic ATPase [Sign 99.2 1.1E-11 2.4E-16 142.2 3.4 322 376-760 520-860 (889)
26 KOG0617 Ras suppressor protein 99.1 1.8E-12 3.9E-17 112.4 -4.1 124 374-507 28-157 (264)
27 KOG4237 Extracellular matrix p 99.1 6.5E-12 1.4E-16 123.6 -1.1 132 348-488 59-199 (498)
28 PF05729 NACHT: NACHT domain 99.1 4.5E-10 9.8E-15 105.3 11.3 144 22-170 1-163 (166)
29 TIGR02928 orc1/cdc6 family rep 99.1 7.1E-08 1.5E-12 103.1 26.2 293 2-311 23-353 (365)
30 COG2256 MGS1 ATPase related to 99.0 1.7E-08 3.6E-13 101.0 15.0 204 19-249 46-267 (436)
31 PF01637 Arch_ATPase: Archaeal 98.9 1.8E-09 3.9E-14 107.7 8.1 189 2-202 7-233 (234)
32 COG3903 Predicted ATPase [Gene 98.9 2.8E-09 6.2E-14 107.3 6.4 236 20-266 13-258 (414)
33 PRK00080 ruvB Holliday junctio 98.9 3.6E-08 7.8E-13 102.8 14.8 254 20-310 50-312 (328)
34 TIGR00635 ruvB Holliday juncti 98.8 6.5E-08 1.4E-12 100.4 16.1 253 20-310 29-291 (305)
35 PF13401 AAA_22: AAA domain; P 98.8 1.2E-08 2.7E-13 91.1 6.2 116 20-139 3-125 (131)
36 PRK06893 DNA replication initi 98.8 6.9E-08 1.5E-12 94.7 11.7 152 22-204 40-204 (229)
37 cd00116 LRR_RI Leucine-rich re 98.7 3.1E-09 6.6E-14 111.6 1.6 237 376-663 20-289 (319)
38 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.5E-07 5.3E-12 91.5 14.1 154 20-204 37-202 (226)
39 PTZ00112 origin recognition co 98.7 1.2E-06 2.5E-11 97.0 19.8 204 2-207 763-986 (1164)
40 cd00116 LRR_RI Leucine-rich re 98.7 6.4E-09 1.4E-13 109.2 2.1 222 400-663 15-261 (319)
41 PF13173 AAA_14: AAA domain 98.7 1.1E-07 2.4E-12 84.0 8.9 120 21-162 2-127 (128)
42 KOG4341 F-box protein containi 98.5 3.2E-09 6.9E-14 105.9 -4.9 169 601-793 292-466 (483)
43 PRK13342 recombination factor 98.5 9.1E-07 2E-11 95.3 12.9 156 20-203 35-196 (413)
44 TIGR00678 holB DNA polymerase 98.5 3E-06 6.6E-11 80.7 14.9 90 99-198 95-186 (188)
45 KOG3207 Beta-tubulin folding c 98.5 4.1E-08 9E-13 98.7 1.9 66 692-759 267-338 (505)
46 KOG2028 ATPase related to the 98.5 1.4E-06 3.1E-11 85.6 12.2 131 19-171 160-295 (554)
47 PF14580 LRR_9: Leucine-rich r 98.5 6.5E-08 1.4E-12 88.8 2.8 131 601-759 17-152 (175)
48 PF05496 RuvB_N: Holliday junc 98.5 1.8E-06 3.8E-11 81.0 11.5 151 19-201 48-219 (233)
49 PRK14961 DNA polymerase III su 98.4 6.8E-06 1.5E-10 86.8 16.6 97 99-199 118-216 (363)
50 KOG1259 Nischarin, modulator o 98.4 3.7E-08 7.9E-13 93.9 -0.6 135 557-741 281-416 (490)
51 PRK14949 DNA polymerase III su 98.4 6.3E-06 1.4E-10 92.8 16.7 102 98-203 117-221 (944)
52 KOG0532 Leucine-rich repeat (L 98.4 1.5E-08 3.3E-13 105.0 -3.7 174 400-639 90-270 (722)
53 PRK04195 replication factor C 98.4 2.1E-05 4.6E-10 86.6 20.6 238 3-282 23-271 (482)
54 cd00009 AAA The AAA+ (ATPases 98.4 1.8E-06 3.8E-11 79.0 10.4 108 20-141 18-131 (151)
55 PRK08727 hypothetical protein; 98.4 3.9E-06 8.6E-11 82.5 13.2 148 22-200 42-201 (233)
56 PRK07003 DNA polymerase III su 98.4 1.3E-05 2.9E-10 88.5 18.3 102 99-204 118-222 (830)
57 PRK12402 replication factor C 98.4 8.1E-06 1.8E-10 86.3 16.5 176 20-201 35-224 (337)
58 cd01128 rho_factor Transcripti 98.4 5.5E-07 1.2E-11 88.3 6.6 89 20-109 15-112 (249)
59 PRK09087 hypothetical protein; 98.4 6.1E-06 1.3E-10 80.4 13.7 140 21-202 44-194 (226)
60 KOG0532 Leucine-rich repeat (L 98.4 1.9E-08 4.1E-13 104.3 -4.2 126 370-507 112-241 (722)
61 PRK14963 DNA polymerase III su 98.4 1.5E-06 3.2E-11 94.6 9.9 168 21-200 36-214 (504)
62 PRK05564 DNA polymerase III su 98.4 1.5E-05 3.3E-10 82.6 16.8 157 20-201 25-188 (313)
63 PRK08084 DNA replication initi 98.4 1E-05 2.2E-10 79.8 14.8 152 21-203 45-209 (235)
64 PLN03025 replication factor C 98.3 7.1E-06 1.5E-10 85.2 14.2 159 20-198 33-195 (319)
65 COG1474 CDC6 Cdc6-related prot 98.3 2.5E-05 5.4E-10 81.4 17.9 178 23-203 44-238 (366)
66 PRK14960 DNA polymerase III su 98.3 1.5E-05 3.2E-10 87.1 16.4 169 21-200 37-216 (702)
67 PRK14957 DNA polymerase III su 98.3 1.6E-05 3.4E-10 86.9 16.8 162 20-205 37-223 (546)
68 PF14580 LRR_9: Leucine-rich r 98.3 3.2E-07 7E-12 84.3 3.0 124 377-512 17-152 (175)
69 COG4886 Leucine-rich repeat (L 98.3 4.4E-07 9.5E-12 98.2 3.9 99 404-506 112-215 (394)
70 PRK12323 DNA polymerase III su 98.3 1.7E-05 3.7E-10 86.4 15.7 99 98-200 122-222 (700)
71 PRK06645 DNA polymerase III su 98.3 1.9E-05 4.2E-10 85.6 15.8 98 98-199 126-225 (507)
72 PRK14962 DNA polymerase III su 98.3 2.7E-05 5.8E-10 84.2 16.8 119 99-221 116-240 (472)
73 COG4886 Leucine-rich repeat (L 98.2 4.8E-07 1E-11 97.9 3.1 91 412-506 97-192 (394)
74 KOG3207 Beta-tubulin folding c 98.2 1.5E-07 3.2E-12 94.8 -0.9 233 453-757 118-364 (505)
75 PRK08903 DnaA regulatory inact 98.2 1E-05 2.2E-10 79.9 12.1 153 20-207 41-203 (227)
76 PRK09376 rho transcription ter 98.2 2.3E-06 5E-11 87.4 7.1 87 22-109 170-265 (416)
77 PRK00440 rfc replication facto 98.2 3.5E-05 7.7E-10 80.7 16.5 158 21-200 38-200 (319)
78 PRK14956 DNA polymerase III su 98.2 2.5E-05 5.4E-10 82.9 14.5 166 22-198 41-217 (484)
79 KOG2120 SCF ubiquitin ligase, 98.2 7.2E-08 1.6E-12 92.0 -4.0 166 552-759 202-375 (419)
80 PRK13341 recombination factor 98.2 1.7E-05 3.7E-10 90.0 13.9 149 20-198 51-212 (725)
81 TIGR02397 dnaX_nterm DNA polym 98.2 6.9E-05 1.5E-09 79.8 18.0 100 99-202 116-217 (355)
82 KOG1259 Nischarin, modulator o 98.2 2.9E-07 6.3E-12 87.9 -0.5 53 455-508 283-337 (490)
83 PRK14964 DNA polymerase III su 98.2 3.9E-05 8.5E-10 82.5 15.5 154 21-198 35-212 (491)
84 PRK07940 DNA polymerase III su 98.2 4.1E-05 8.8E-10 80.8 15.3 93 99-200 116-210 (394)
85 PRK08691 DNA polymerase III su 98.2 3.8E-05 8.2E-10 84.8 15.5 98 99-200 118-217 (709)
86 PRK07994 DNA polymerase III su 98.2 2.7E-05 5.8E-10 86.4 14.4 172 21-203 38-221 (647)
87 PRK05642 DNA replication initi 98.1 2.2E-05 4.8E-10 77.3 12.1 152 22-204 46-209 (234)
88 PRK14958 DNA polymerase III su 98.1 4.6E-05 1E-09 83.4 15.7 99 98-200 117-217 (509)
89 PRK14087 dnaA chromosomal repl 98.1 2.9E-05 6.3E-10 83.9 13.7 167 21-205 141-321 (450)
90 PF05621 TniB: Bacterial TniB 98.1 6.3E-05 1.4E-09 74.3 14.3 190 4-199 47-257 (302)
91 PRK05896 DNA polymerase III su 98.1 6.5E-05 1.4E-09 82.2 15.6 175 20-205 37-223 (605)
92 PRK09112 DNA polymerase III su 98.1 7.2E-05 1.6E-09 77.8 15.4 171 20-202 44-239 (351)
93 PRK14951 DNA polymerase III su 98.1 9.2E-05 2E-09 82.1 16.7 98 99-200 123-222 (618)
94 PF00308 Bac_DnaA: Bacterial d 98.1 3.7E-05 7.9E-10 74.7 11.9 160 20-201 33-206 (219)
95 PRK14955 DNA polymerase III su 98.1 7.2E-05 1.6E-09 80.0 14.9 174 21-200 38-225 (397)
96 PRK14969 DNA polymerase III su 98.1 9.8E-05 2.1E-09 81.4 16.2 104 98-205 117-223 (527)
97 PRK06620 hypothetical protein; 98.1 4.1E-05 9E-10 73.9 11.8 135 22-200 45-186 (214)
98 PRK14959 DNA polymerase III su 98.1 7.2E-05 1.6E-09 82.3 14.9 176 21-207 38-225 (624)
99 TIGR00767 rho transcription te 98.1 8.2E-06 1.8E-10 83.9 7.0 87 22-109 169-264 (415)
100 KOG1909 Ran GTPase-activating 98.0 2.5E-07 5.3E-12 90.7 -3.9 207 403-639 25-251 (382)
101 TIGR02903 spore_lon_C ATP-depe 98.0 0.00011 2.4E-09 82.7 16.3 114 89-206 281-398 (615)
102 CHL00181 cbbX CbbX; Provisiona 98.0 0.00011 2.3E-09 74.5 14.5 135 23-174 61-213 (287)
103 TIGR02880 cbbX_cfxQ probable R 98.0 9.1E-05 2E-09 75.1 13.7 134 23-172 60-210 (284)
104 COG3267 ExeA Type II secretory 98.0 0.00025 5.3E-09 67.5 14.8 179 20-205 50-247 (269)
105 PRK14952 DNA polymerase III su 98.0 0.00029 6.3E-09 77.9 17.7 106 98-207 116-224 (584)
106 PRK07471 DNA polymerase III su 98.0 1.2E-05 2.6E-10 84.0 6.6 97 99-203 140-238 (365)
107 PRK09111 DNA polymerase III su 98.0 0.0002 4.4E-09 79.6 16.5 172 20-201 45-231 (598)
108 TIGR02881 spore_V_K stage V sp 98.0 8.2E-05 1.8E-09 74.9 12.2 139 19-173 40-194 (261)
109 PRK08451 DNA polymerase III su 97.9 0.00042 9.1E-09 75.5 17.9 99 99-201 116-216 (535)
110 TIGR01242 26Sp45 26S proteasom 97.9 0.0001 2.2E-09 78.3 13.0 151 21-197 156-328 (364)
111 PRK05707 DNA polymerase III su 97.9 0.00017 3.7E-09 74.4 13.9 95 99-201 105-201 (328)
112 PRK15386 type III secretion pr 97.9 3.7E-05 7.9E-10 79.7 8.9 142 595-758 44-188 (426)
113 PRK07133 DNA polymerase III su 97.9 0.00027 5.9E-09 79.1 16.2 103 98-204 116-221 (725)
114 PRK14970 DNA polymerase III su 97.9 0.0004 8.7E-09 74.0 17.2 156 20-198 38-204 (367)
115 PRK14950 DNA polymerase III su 97.9 0.00031 6.8E-09 79.0 17.0 171 21-201 38-219 (585)
116 TIGR00362 DnaA chromosomal rep 97.9 0.00016 3.4E-09 78.1 14.1 159 21-201 136-308 (405)
117 COG3899 Predicted ATPase [Gene 97.9 0.00039 8.4E-09 81.3 18.1 190 98-306 152-355 (849)
118 PRK14954 DNA polymerase III su 97.9 0.00029 6.3E-09 78.5 16.3 177 21-203 38-229 (620)
119 PRK14088 dnaA chromosomal repl 97.9 0.00018 3.9E-09 77.7 14.4 158 21-201 130-303 (440)
120 PTZ00202 tuzin; Provisional 97.9 0.00039 8.4E-09 71.8 15.6 156 2-170 270-434 (550)
121 PRK14953 DNA polymerase III su 97.9 0.00066 1.4E-08 74.0 18.4 99 98-200 117-217 (486)
122 PRK12422 chromosomal replicati 97.9 0.00018 3.9E-09 77.5 14.0 153 21-195 141-305 (445)
123 PRK07764 DNA polymerase III su 97.9 0.00036 7.9E-09 80.4 17.1 97 98-198 118-216 (824)
124 PHA02544 44 clamp loader, smal 97.9 0.00011 2.5E-09 76.6 12.1 139 3-168 30-171 (316)
125 PF00004 AAA: ATPase family as 97.8 4.5E-05 9.7E-10 68.0 7.3 97 24-140 1-112 (132)
126 PRK14086 dnaA chromosomal repl 97.8 0.00035 7.5E-09 76.7 15.3 155 22-200 315-485 (617)
127 PRK06305 DNA polymerase III su 97.8 0.00032 7E-09 75.9 15.0 101 99-203 120-223 (451)
128 PF14516 AAA_35: AAA-like doma 97.8 0.0016 3.5E-08 67.8 19.7 179 22-210 32-246 (331)
129 PRK15386 type III secretion pr 97.8 6.6E-05 1.4E-09 77.8 8.5 109 625-760 48-169 (426)
130 smart00382 AAA ATPases associa 97.8 0.00011 2.4E-09 66.5 9.3 87 22-112 3-90 (148)
131 KOG4341 F-box protein containi 97.8 7.4E-07 1.6E-11 89.4 -5.5 146 600-766 265-420 (483)
132 PRK00149 dnaA chromosomal repl 97.8 0.00051 1.1E-08 75.1 15.9 157 21-201 148-320 (450)
133 PF13191 AAA_16: AAA ATPase do 97.8 3.3E-05 7E-10 73.7 5.9 55 2-61 8-62 (185)
134 KOG2120 SCF ubiquitin ligase, 97.8 3.1E-07 6.6E-12 87.8 -8.0 162 560-759 185-350 (419)
135 PRK14948 DNA polymerase III su 97.8 0.00089 1.9E-08 75.2 17.7 170 21-200 38-219 (620)
136 COG2255 RuvB Holliday junction 97.8 0.0013 2.7E-08 63.5 15.9 157 17-208 48-225 (332)
137 PF13855 LRR_8: Leucine rich r 97.7 5.4E-05 1.2E-09 56.6 5.0 59 696-758 1-60 (61)
138 PRK14971 DNA polymerase III su 97.7 0.0008 1.7E-08 75.6 16.4 96 99-198 120-217 (614)
139 PRK06647 DNA polymerase III su 97.7 0.0013 2.8E-08 73.0 17.6 99 98-200 117-217 (563)
140 COG0593 DnaA ATPase involved i 97.7 0.00039 8.4E-09 72.4 12.7 149 20-189 112-276 (408)
141 PRK08116 hypothetical protein; 97.7 0.00014 3.1E-09 72.9 9.3 103 22-139 115-220 (268)
142 KOG2227 Pre-initiation complex 97.7 0.00087 1.9E-08 69.2 14.7 204 2-207 158-376 (529)
143 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00033 7.2E-09 81.8 13.2 144 2-169 195-362 (852)
144 PRK14965 DNA polymerase III su 97.7 0.0016 3.5E-08 72.9 18.1 103 99-205 118-223 (576)
145 COG1373 Predicted ATPase (AAA+ 97.7 0.00055 1.2E-08 72.8 13.8 119 23-166 39-163 (398)
146 KOG0989 Replication factor C, 97.7 0.00014 2.9E-09 70.8 8.2 163 19-196 55-223 (346)
147 PRK11331 5-methylcytosine-spec 97.7 0.00011 2.4E-09 77.1 8.0 100 22-125 195-298 (459)
148 KOG1909 Ran GTPase-activating 97.7 2.1E-05 4.6E-10 77.4 2.3 241 375-663 26-309 (382)
149 TIGR03689 pup_AAA proteasome A 97.6 0.00091 2E-08 72.5 14.5 140 20-171 215-379 (512)
150 TIGR02640 gas_vesic_GvpN gas v 97.6 0.0013 2.7E-08 66.2 14.8 140 23-170 23-198 (262)
151 PF13855 LRR_8: Leucine rich r 97.6 5E-05 1.1E-09 56.8 3.2 56 380-444 2-58 (61)
152 PRK06871 DNA polymerase III su 97.6 0.0023 5E-08 65.5 15.8 163 20-198 23-198 (325)
153 PRK03992 proteasome-activating 97.6 0.00058 1.3E-08 72.8 11.6 133 20-173 164-318 (389)
154 PRK08181 transposase; Validate 97.6 0.00037 8.1E-09 69.4 9.4 101 22-140 107-209 (269)
155 PRK05563 DNA polymerase III su 97.6 0.0036 7.8E-08 69.8 18.2 168 20-198 37-215 (559)
156 KOG0741 AAA+-type ATPase [Post 97.6 0.0011 2.3E-08 69.3 12.7 130 18-168 535-684 (744)
157 PRK08058 DNA polymerase III su 97.5 0.0014 3.1E-08 68.1 13.8 71 98-168 108-180 (329)
158 PRK08769 DNA polymerase III su 97.5 0.0031 6.7E-08 64.4 15.8 94 99-202 112-207 (319)
159 PF05673 DUF815: Protein of un 97.5 0.0032 6.9E-08 60.4 14.5 99 20-143 51-154 (249)
160 PTZ00361 26 proteosome regulat 97.5 0.00038 8.3E-09 74.2 9.3 134 20-173 216-370 (438)
161 KOG1969 DNA replication checkp 97.5 0.0064 1.4E-07 66.4 18.3 87 17-121 322-408 (877)
162 KOG2982 Uncharacterized conser 97.5 2.3E-05 4.9E-10 75.3 0.0 65 596-661 217-288 (418)
163 PLN03150 hypothetical protein; 97.5 0.00013 2.9E-09 82.8 6.1 87 409-498 419-512 (623)
164 PLN03150 hypothetical protein; 97.5 0.0001 2.2E-09 83.7 5.1 71 437-507 420-497 (623)
165 KOG2543 Origin recognition com 97.5 0.0055 1.2E-07 61.8 15.9 143 20-169 29-192 (438)
166 TIGR00602 rad24 checkpoint pro 97.4 0.00062 1.3E-08 75.8 10.2 40 3-43 93-132 (637)
167 PTZ00454 26S protease regulato 97.4 0.0023 5E-08 67.9 14.1 133 20-172 178-331 (398)
168 PF12799 LRR_4: Leucine Rich r 97.4 0.00015 3.2E-09 49.5 3.3 38 408-449 1-40 (44)
169 PRK04296 thymidine kinase; Pro 97.4 0.0003 6.5E-09 66.8 6.5 113 22-141 3-117 (190)
170 PRK12377 putative replication 97.4 0.00023 4.9E-09 69.9 5.7 102 21-139 101-205 (248)
171 KOG3665 ZYG-1-like serine/thre 97.4 6.4E-05 1.4E-09 85.0 2.0 127 355-490 121-263 (699)
172 PF01695 IstB_IS21: IstB-like 97.4 0.00018 4E-09 67.1 4.7 101 21-139 47-149 (178)
173 TIGR02639 ClpA ATP-dependent C 97.4 0.001 2.2E-08 77.3 11.7 145 2-170 190-358 (731)
174 PF10443 RNA12: RNA12 protein; 97.4 0.0068 1.5E-07 63.0 16.3 202 1-215 3-290 (431)
175 PF13177 DNA_pol3_delta2: DNA 97.4 0.00079 1.7E-08 61.9 8.8 118 20-158 18-162 (162)
176 PF04665 Pox_A32: Poxvirus A32 97.4 0.00079 1.7E-08 65.1 9.0 35 23-59 15-49 (241)
177 KOG0531 Protein phosphatase 1, 97.4 3.2E-05 7E-10 83.7 -0.7 97 404-506 91-192 (414)
178 CHL00176 ftsH cell division pr 97.4 0.0025 5.5E-08 71.6 13.8 150 21-195 216-386 (638)
179 PRK07993 DNA polymerase III su 97.3 0.0047 1E-07 64.0 14.6 92 98-198 106-199 (334)
180 COG1222 RPT1 ATP-dependent 26S 97.3 0.0034 7.3E-08 62.8 12.7 163 19-207 183-371 (406)
181 PF07693 KAP_NTPase: KAP famil 97.3 0.0093 2E-07 62.6 17.1 37 4-43 6-42 (325)
182 PRK07952 DNA replication prote 97.3 0.00069 1.5E-08 66.4 7.8 103 21-139 99-204 (244)
183 PRK09183 transposase/IS protei 97.3 0.00078 1.7E-08 67.3 8.3 100 22-139 103-205 (259)
184 KOG0531 Protein phosphatase 1, 97.3 4.7E-05 1E-09 82.5 -0.4 95 406-506 70-168 (414)
185 PRK06526 transposase; Provisio 97.3 0.00045 9.7E-09 68.5 6.2 101 21-140 98-201 (254)
186 PRK07399 DNA polymerase III su 97.3 0.0073 1.6E-07 62.0 15.2 96 98-201 122-219 (314)
187 PRK04132 replication factor C 97.3 0.0057 1.2E-07 70.3 15.6 151 29-199 574-727 (846)
188 PRK06090 DNA polymerase III su 97.3 0.0079 1.7E-07 61.5 15.1 163 20-203 24-201 (319)
189 PRK08118 topology modulation p 97.3 0.00011 2.5E-09 67.9 1.6 34 23-56 3-37 (167)
190 PF07728 AAA_5: AAA domain (dy 97.3 0.00014 2.9E-09 65.5 2.1 89 24-125 2-90 (139)
191 PRK06964 DNA polymerase III su 97.3 0.008 1.7E-07 62.1 15.1 91 98-200 130-222 (342)
192 CHL00095 clpC Clp protease ATP 97.2 0.0017 3.7E-08 76.3 11.4 144 2-168 187-352 (821)
193 PRK06921 hypothetical protein; 97.2 0.0014 2.9E-08 65.7 9.1 37 21-59 117-154 (266)
194 PRK10536 hypothetical protein; 97.2 0.0011 2.4E-08 64.3 7.6 117 22-142 75-215 (262)
195 PRK11034 clpA ATP-dependent Cl 97.1 0.0018 3.9E-08 74.2 10.0 147 2-170 194-362 (758)
196 KOG3665 ZYG-1-like serine/thre 97.1 0.00012 2.7E-09 82.7 0.3 93 473-573 169-263 (699)
197 PRK10865 protein disaggregatio 97.1 0.0037 8E-08 73.5 12.1 111 21-139 598-720 (857)
198 COG0470 HolB ATPase involved i 97.1 0.0028 6E-08 66.6 10.1 133 4-158 11-169 (325)
199 PF12799 LRR_4: Leucine Rich r 97.1 0.00051 1.1E-08 46.9 2.9 36 723-759 1-36 (44)
200 KOG2982 Uncharacterized conser 97.1 0.00026 5.7E-09 68.2 1.8 202 557-784 68-284 (418)
201 PRK08939 primosomal protein Dn 97.1 0.0016 3.6E-08 66.4 7.7 101 21-139 156-260 (306)
202 TIGR02237 recomb_radB DNA repa 97.1 0.0017 3.6E-08 63.1 7.6 47 20-69 11-57 (209)
203 PRK11889 flhF flagellar biosyn 97.0 0.0062 1.3E-07 62.9 11.7 91 19-111 239-331 (436)
204 TIGR00763 lon ATP-dependent pr 97.0 0.006 1.3E-07 71.4 13.3 136 22-170 348-505 (775)
205 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0032 6.9E-08 74.4 11.1 145 2-170 181-349 (852)
206 KOG0744 AAA+-type ATPase [Post 97.0 0.0041 8.9E-08 61.0 9.6 38 22-59 178-217 (423)
207 TIGR01241 FtsH_fam ATP-depende 97.0 0.0077 1.7E-07 66.8 13.2 151 21-196 88-259 (495)
208 PRK10787 DNA-binding ATP-depen 97.0 0.0056 1.2E-07 70.9 12.3 156 3-170 331-506 (784)
209 PF00448 SRP54: SRP54-type pro 97.0 0.00061 1.3E-08 64.7 3.8 87 21-109 1-92 (196)
210 COG0466 Lon ATP-dependent Lon 97.0 0.0045 9.7E-08 67.7 10.4 156 2-170 331-508 (782)
211 PRK07261 topology modulation p 97.0 0.0016 3.6E-08 60.5 6.5 21 23-43 2-22 (171)
212 PRK12608 transcription termina 97.0 0.0038 8.3E-08 64.3 9.5 86 22-109 134-229 (380)
213 PRK06835 DNA replication prote 97.0 0.0013 2.8E-08 67.7 6.2 102 22-139 184-288 (329)
214 PRK10865 protein disaggregatio 97.0 0.0067 1.4E-07 71.4 12.9 145 2-170 186-354 (857)
215 TIGR02639 ClpA ATP-dependent C 97.0 0.0087 1.9E-07 69.6 13.7 94 20-126 483-579 (731)
216 COG1484 DnaC DNA replication p 97.0 0.00099 2.1E-08 66.1 5.0 81 21-118 105-185 (254)
217 cd01120 RecA-like_NTPases RecA 96.9 0.0032 6.9E-08 58.4 8.2 39 23-63 1-39 (165)
218 PRK09361 radB DNA repair and r 96.9 0.0023 4.9E-08 63.0 7.4 46 19-67 21-66 (225)
219 PLN00020 ribulose bisphosphate 96.9 0.02 4.4E-07 58.4 13.9 26 18-43 145-170 (413)
220 COG2607 Predicted ATPase (AAA+ 96.9 0.023 5E-07 53.7 13.1 94 22-140 86-183 (287)
221 PF02562 PhoH: PhoH-like prote 96.9 0.0014 3.1E-08 61.9 5.4 117 21-141 19-157 (205)
222 KOG1514 Origin recognition com 96.9 0.028 6.1E-07 61.4 15.6 196 3-205 405-623 (767)
223 PRK05541 adenylylsulfate kinas 96.9 0.0014 3E-08 61.6 5.4 37 20-58 6-42 (176)
224 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0036 7.8E-08 73.9 9.8 96 21-126 595-693 (852)
225 cd01394 radB RadB. The archaea 96.9 0.0028 6E-08 62.1 7.4 43 19-63 17-59 (218)
226 COG1875 NYN ribonuclease and A 96.8 0.0021 4.4E-08 64.3 6.1 126 7-142 237-390 (436)
227 CHL00195 ycf46 Ycf46; Provisio 96.8 0.011 2.4E-07 64.3 12.3 134 20-173 258-408 (489)
228 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0084 1.8E-07 64.1 10.8 168 19-207 221-410 (802)
229 KOG0734 AAA+-type ATPase conta 96.8 0.0047 1E-07 64.8 8.8 44 1-44 314-360 (752)
230 KOG0733 Nuclear AAA ATPase (VC 96.8 0.016 3.5E-07 62.0 12.7 154 21-197 545-718 (802)
231 KOG0728 26S proteasome regulat 96.8 0.015 3.3E-07 54.8 11.2 128 19-170 179-331 (404)
232 PHA00729 NTP-binding motif con 96.8 0.0042 9.1E-08 59.4 7.9 24 20-43 16-39 (226)
233 KOG1644 U2-associated snRNP A' 96.8 0.0022 4.9E-08 58.6 5.6 108 628-759 41-152 (233)
234 KOG0730 AAA+-type ATPase [Post 96.8 0.0054 1.2E-07 66.4 9.4 147 19-187 466-631 (693)
235 PF13207 AAA_17: AAA domain; P 96.8 0.00086 1.9E-08 58.6 2.9 21 23-43 1-21 (121)
236 KOG2004 Mitochondrial ATP-depe 96.8 0.0074 1.6E-07 65.8 10.2 155 3-170 420-596 (906)
237 PRK05703 flhF flagellar biosyn 96.8 0.013 2.8E-07 63.0 12.2 87 21-109 221-308 (424)
238 cd01393 recA_like RecA is a b 96.8 0.0048 1E-07 60.8 8.5 88 19-109 17-123 (226)
239 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0049 1.1E-07 61.0 7.9 86 22-109 70-172 (274)
240 cd03214 ABC_Iron-Siderophores_ 96.7 0.014 3.1E-07 55.0 10.8 119 22-143 26-161 (180)
241 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0033 7.1E-08 73.7 7.8 111 19-139 594-718 (852)
242 cd03228 ABCC_MRP_Like The MRP 96.7 0.0088 1.9E-07 55.8 9.3 124 22-154 29-167 (171)
243 KOG0735 AAA+-type ATPase [Post 96.7 0.017 3.8E-07 62.9 12.2 132 21-170 431-586 (952)
244 TIGR03499 FlhF flagellar biosy 96.7 0.0092 2E-07 60.5 9.9 88 20-109 193-281 (282)
245 PRK00771 signal recognition pa 96.7 0.019 4.1E-07 61.5 12.4 88 19-109 93-184 (437)
246 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0082 1.8E-07 59.5 9.3 56 19-75 17-76 (235)
247 cd03247 ABCC_cytochrome_bd The 96.7 0.0063 1.4E-07 57.3 8.0 125 22-154 29-169 (178)
248 cd01131 PilT Pilus retraction 96.7 0.0036 7.9E-08 59.9 6.2 110 22-142 2-111 (198)
249 COG1223 Predicted ATPase (AAA+ 96.6 0.019 4.1E-07 54.7 10.4 145 6-174 136-301 (368)
250 PRK08699 DNA polymerase III su 96.6 0.019 4.2E-07 59.2 11.5 71 99-169 112-184 (325)
251 CHL00095 clpC Clp protease ATP 96.6 0.0066 1.4E-07 71.5 9.1 109 21-139 539-661 (821)
252 cd00561 CobA_CobO_BtuR ATP:cor 96.6 0.01 2.2E-07 53.6 8.2 116 22-140 3-138 (159)
253 cd03223 ABCD_peroxisomal_ALDP 96.6 0.025 5.3E-07 52.5 11.1 123 22-154 28-160 (166)
254 COG0542 clpA ATP-binding subun 96.5 0.005 1.1E-07 69.2 7.2 99 18-127 518-620 (786)
255 PRK12726 flagellar biosynthesi 96.5 0.018 3.9E-07 59.4 10.5 91 19-111 204-296 (407)
256 PRK14722 flhF flagellar biosyn 96.5 0.0065 1.4E-07 63.3 7.6 88 20-111 136-226 (374)
257 PRK12723 flagellar biosynthesi 96.5 0.015 3.1E-07 61.3 10.2 91 19-111 172-265 (388)
258 PRK12724 flagellar biosynthesi 96.5 0.0097 2.1E-07 62.4 8.6 100 20-123 222-324 (432)
259 PHA02244 ATPase-like protein 96.5 0.01 2.2E-07 61.0 8.5 33 3-43 109-141 (383)
260 TIGR01243 CDC48 AAA family ATP 96.5 0.03 6.5E-07 65.5 13.7 152 20-197 486-657 (733)
261 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.03 6.4E-07 54.5 11.2 121 22-144 31-203 (254)
262 COG4608 AppF ABC-type oligopep 96.5 0.012 2.6E-07 57.3 8.4 122 21-146 39-176 (268)
263 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.025 5.3E-07 51.0 10.1 104 22-144 27-131 (144)
264 PRK05800 cobU adenosylcobinami 96.5 0.0065 1.4E-07 56.2 6.5 80 23-109 3-85 (170)
265 PRK07132 DNA polymerase III su 96.5 0.077 1.7E-06 53.9 14.7 152 20-204 17-186 (299)
266 TIGR02012 tigrfam_recA protein 96.5 0.0076 1.6E-07 61.4 7.4 83 20-109 54-142 (321)
267 PRK08233 hypothetical protein; 96.5 0.0078 1.7E-07 57.0 7.2 24 21-44 3-26 (182)
268 cd03216 ABC_Carb_Monos_I This 96.5 0.012 2.5E-07 54.5 8.1 115 22-143 27-145 (163)
269 PF14532 Sigma54_activ_2: Sigm 96.5 0.0051 1.1E-07 55.1 5.5 87 22-140 22-110 (138)
270 TIGR00064 ftsY signal recognit 96.5 0.02 4.3E-07 57.6 10.2 90 19-110 70-164 (272)
271 cd03238 ABC_UvrA The excision 96.5 0.015 3.2E-07 54.2 8.6 121 22-154 22-161 (176)
272 PRK10867 signal recognition pa 96.5 0.017 3.7E-07 61.7 10.2 40 19-60 98-138 (433)
273 PRK14974 cell division protein 96.4 0.019 4.1E-07 59.2 10.1 91 19-111 138-233 (336)
274 PRK11034 clpA ATP-dependent Cl 96.4 0.024 5.3E-07 65.2 12.0 94 20-126 487-583 (758)
275 cd00544 CobU Adenosylcobinamid 96.4 0.014 3.1E-07 53.8 8.2 78 24-109 2-82 (169)
276 PRK07667 uridine kinase; Provi 96.4 0.0054 1.2E-07 58.5 5.7 37 3-43 3-39 (193)
277 cd00983 recA RecA is a bacter 96.4 0.0091 2E-07 60.9 7.5 83 20-109 54-142 (325)
278 KOG0743 AAA+-type ATPase [Post 96.4 0.091 2E-06 54.8 14.6 150 23-207 237-413 (457)
279 TIGR01650 PD_CobS cobaltochela 96.4 0.049 1.1E-06 55.4 12.3 138 23-170 66-233 (327)
280 PRK06696 uridine kinase; Valid 96.3 0.0057 1.2E-07 59.9 5.5 37 4-43 8-44 (223)
281 KOG1859 Leucine-rich repeat pr 96.3 0.00011 2.5E-09 79.1 -6.8 84 553-661 180-263 (1096)
282 COG2884 FtsE Predicted ATPase 96.3 0.035 7.6E-07 50.6 9.7 61 86-146 141-203 (223)
283 cd03246 ABCC_Protease_Secretio 96.3 0.016 3.4E-07 54.3 8.1 126 22-154 29-168 (173)
284 PRK06067 flagellar accessory p 96.3 0.0087 1.9E-07 59.2 6.8 87 19-110 23-130 (234)
285 PRK09354 recA recombinase A; P 96.3 0.012 2.5E-07 60.6 7.7 83 20-109 59-147 (349)
286 KOG2035 Replication factor C, 96.3 0.14 2.9E-06 49.7 14.1 210 19-245 32-282 (351)
287 COG2812 DnaX DNA polymerase II 96.3 0.022 4.8E-07 61.6 10.0 164 22-196 39-213 (515)
288 PF13604 AAA_30: AAA domain; P 96.3 0.0021 4.6E-08 61.3 2.2 109 21-141 18-132 (196)
289 TIGR00959 ffh signal recogniti 96.3 0.021 4.6E-07 61.0 9.8 57 19-77 97-155 (428)
290 COG0396 sufC Cysteine desulfur 96.3 0.056 1.2E-06 51.0 11.1 65 89-153 151-217 (251)
291 PRK13695 putative NTPase; Prov 96.3 0.0057 1.2E-07 57.3 4.9 21 24-44 3-23 (174)
292 TIGR01243 CDC48 AAA family ATP 96.3 0.023 4.9E-07 66.5 10.8 153 20-197 211-381 (733)
293 PRK12727 flagellar biosynthesi 96.3 0.016 3.5E-07 62.5 8.6 89 20-110 349-438 (559)
294 TIGR02858 spore_III_AA stage I 96.2 0.062 1.4E-06 53.7 12.3 114 20-143 110-232 (270)
295 smart00763 AAA_PrkA PrkA AAA d 96.2 0.0036 7.8E-08 64.2 3.5 43 2-44 59-101 (361)
296 cd01122 GP4d_helicase GP4d_hel 96.2 0.04 8.7E-07 56.0 11.2 51 21-75 30-81 (271)
297 COG0468 RecA RecA/RadA recombi 96.2 0.018 4E-07 57.2 8.3 88 19-109 58-150 (279)
298 COG1136 SalX ABC-type antimicr 96.2 0.05 1.1E-06 52.1 10.8 67 87-155 147-216 (226)
299 PF03215 Rad17: Rad17 cell cyc 96.2 0.019 4.2E-07 62.9 9.1 51 3-58 28-78 (519)
300 KOG0731 AAA+-type ATPase conta 96.2 0.072 1.6E-06 59.8 13.5 172 2-198 322-519 (774)
301 COG1102 Cmk Cytidylate kinase 96.2 0.008 1.7E-07 53.0 4.9 44 23-79 2-45 (179)
302 COG0464 SpoVK ATPases of the A 96.2 0.036 7.8E-07 61.7 11.4 134 19-172 274-425 (494)
303 KOG4579 Leucine-rich repeat (L 96.2 0.001 2.2E-08 56.7 -0.6 84 406-493 51-139 (177)
304 cd03115 SRP The signal recogni 96.2 0.015 3.2E-07 54.5 7.2 85 23-109 2-91 (173)
305 TIGR02902 spore_lonB ATP-depen 96.2 0.022 4.7E-07 63.4 9.5 73 100-172 175-278 (531)
306 COG1618 Predicted nucleotide k 96.1 0.0046 1E-07 54.4 3.3 22 22-43 6-27 (179)
307 cd03230 ABC_DR_subfamily_A Thi 96.1 0.016 3.6E-07 54.1 7.3 117 22-144 27-159 (173)
308 PRK13531 regulatory ATPase Rav 96.1 0.013 2.7E-07 62.6 6.9 66 103-169 110-193 (498)
309 KOG1644 U2-associated snRNP A' 96.1 0.01 2.2E-07 54.5 5.2 92 596-706 57-150 (233)
310 cd03229 ABC_Class3 This class 96.1 0.02 4.2E-07 53.9 7.6 120 22-144 27-165 (178)
311 KOG2228 Origin recognition com 96.1 0.056 1.2E-06 53.8 10.6 148 20-170 48-219 (408)
312 PF08423 Rad51: Rad51; InterP 96.1 0.021 4.6E-07 56.9 8.1 55 21-76 38-96 (256)
313 PF00158 Sigma54_activat: Sigm 96.1 0.023 5E-07 52.4 7.8 21 23-43 24-44 (168)
314 PRK09270 nucleoside triphospha 96.1 0.016 3.5E-07 57.0 7.2 25 19-43 31-55 (229)
315 COG0572 Udk Uridine kinase [Nu 96.1 0.011 2.4E-07 55.8 5.6 25 19-43 6-30 (218)
316 cd02025 PanK Pantothenate kina 96.0 0.022 4.8E-07 55.4 7.8 21 23-43 1-21 (220)
317 PF01583 APS_kinase: Adenylyls 96.0 0.0078 1.7E-07 54.1 4.2 37 21-59 2-38 (156)
318 PF07724 AAA_2: AAA domain (Cd 95.9 0.0037 8.1E-08 57.9 1.8 42 21-64 3-45 (171)
319 cd00267 ABC_ATPase ABC (ATP-bi 95.9 0.028 6E-07 51.7 7.5 118 22-145 26-145 (157)
320 PF13238 AAA_18: AAA domain; P 95.9 0.0053 1.2E-07 54.2 2.7 20 24-43 1-20 (129)
321 TIGR00554 panK_bact pantothena 95.9 0.034 7.3E-07 56.1 8.5 25 19-43 60-84 (290)
322 PRK10416 signal recognition pa 95.9 0.063 1.4E-06 55.2 10.7 39 19-59 112-150 (318)
323 KOG0991 Replication factor C, 95.9 0.027 5.7E-07 52.8 7.0 88 19-122 46-135 (333)
324 PRK00889 adenylylsulfate kinas 95.9 0.016 3.5E-07 54.3 5.9 24 20-43 3-26 (175)
325 PF00485 PRK: Phosphoribulokin 95.8 0.0069 1.5E-07 57.9 3.3 21 23-43 1-21 (194)
326 KOG1859 Leucine-rich repeat pr 95.8 0.00037 8E-09 75.4 -5.9 125 354-491 162-293 (1096)
327 cd01121 Sms Sms (bacterial rad 95.8 0.042 9.2E-07 57.7 9.0 82 20-109 81-167 (372)
328 TIGR01425 SRP54_euk signal rec 95.7 0.036 7.9E-07 58.8 8.4 40 19-60 98-137 (429)
329 PRK06547 hypothetical protein; 95.7 0.013 2.8E-07 54.4 4.5 25 19-43 13-37 (172)
330 TIGR02238 recomb_DMC1 meiotic 95.7 0.029 6.3E-07 57.5 7.3 58 20-78 95-156 (313)
331 KOG4579 Leucine-rich repeat (L 95.7 0.0019 4.2E-08 55.0 -1.0 67 401-471 70-140 (177)
332 COG4088 Predicted nucleotide k 95.7 0.029 6.2E-07 51.7 6.3 27 22-50 2-28 (261)
333 cd01125 repA Hexameric Replica 95.7 0.075 1.6E-06 52.7 10.1 142 23-164 3-198 (239)
334 cd02019 NK Nucleoside/nucleoti 95.7 0.0076 1.7E-07 46.2 2.3 21 23-43 1-21 (69)
335 cd03222 ABC_RNaseL_inhibitor T 95.7 0.065 1.4E-06 50.0 8.9 108 22-144 26-136 (177)
336 KOG2739 Leucine-rich acidic nu 95.6 0.0038 8.2E-08 59.8 0.7 69 598-666 60-130 (260)
337 PRK05480 uridine/cytidine kina 95.6 0.0092 2E-07 57.9 3.4 24 20-43 5-28 (209)
338 KOG0736 Peroxisome assembly fa 95.6 0.16 3.4E-06 56.4 12.6 71 21-111 705-775 (953)
339 cd03369 ABCC_NFT1 Domain 2 of 95.6 0.16 3.4E-06 49.1 11.7 22 22-43 35-56 (207)
340 KOG0729 26S proteasome regulat 95.6 0.014 3.1E-07 55.5 4.1 31 19-51 209-239 (435)
341 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.054 1.2E-06 53.6 8.4 49 19-71 19-67 (237)
342 cd02027 APSK Adenosine 5'-phos 95.5 0.024 5.3E-07 51.3 5.5 21 23-43 1-21 (149)
343 PF12775 AAA_7: P-loop contain 95.5 0.0064 1.4E-07 61.1 1.9 82 22-116 34-116 (272)
344 PRK10733 hflB ATP-dependent me 95.5 0.069 1.5E-06 61.0 10.3 131 22-172 186-337 (644)
345 cd03244 ABCC_MRP_domain2 Domai 95.5 0.12 2.6E-06 50.6 10.8 23 22-44 31-53 (221)
346 COG0563 Adk Adenylate kinase a 95.5 0.02 4.3E-07 53.3 4.8 22 23-44 2-23 (178)
347 TIGR02236 recomb_radA DNA repa 95.5 0.05 1.1E-06 56.4 8.4 57 20-77 94-154 (310)
348 KOG2123 Uncharacterized conser 95.5 0.00058 1.2E-08 65.3 -5.4 52 604-660 20-71 (388)
349 PLN03186 DNA repair protein RA 95.5 0.049 1.1E-06 56.4 8.1 59 19-78 121-183 (342)
350 PRK06762 hypothetical protein; 95.5 0.011 2.3E-07 55.0 3.0 23 21-43 2-24 (166)
351 PRK14723 flhF flagellar biosyn 95.4 0.084 1.8E-06 60.1 10.4 88 21-110 185-273 (767)
352 cd03282 ABC_MSH4_euk MutS4 hom 95.4 0.026 5.6E-07 54.1 5.6 117 21-146 29-157 (204)
353 TIGR00235 udk uridine kinase. 95.4 0.014 2.9E-07 56.5 3.7 24 20-43 5-28 (207)
354 TIGR03878 thermo_KaiC_2 KaiC d 95.4 0.029 6.4E-07 56.2 6.2 40 20-61 35-74 (259)
355 COG1428 Deoxynucleoside kinase 95.4 0.0095 2.1E-07 55.4 2.4 24 21-44 4-27 (216)
356 PF13671 AAA_33: AAA domain; P 95.4 0.013 2.8E-07 52.9 3.3 21 23-43 1-21 (143)
357 PF07726 AAA_3: ATPase family 95.4 0.0058 1.3E-07 52.2 0.9 28 24-53 2-29 (131)
358 COG1126 GlnQ ABC-type polar am 95.4 0.12 2.6E-06 48.4 9.4 34 22-58 29-62 (240)
359 PTZ00301 uridine kinase; Provi 95.4 0.012 2.5E-07 56.5 3.1 23 21-43 3-25 (210)
360 COG4619 ABC-type uncharacteriz 95.4 0.28 6.1E-06 43.9 11.1 21 23-43 31-51 (223)
361 PRK05917 DNA polymerase III su 95.4 0.37 8E-06 48.4 13.6 60 98-157 93-154 (290)
362 PF03308 ArgK: ArgK protein; 95.4 0.019 4E-07 55.6 4.3 37 3-43 15-51 (266)
363 KOG2739 Leucine-rich acidic nu 95.4 0.004 8.7E-08 59.6 -0.2 110 603-735 43-155 (260)
364 PRK04301 radA DNA repair and r 95.4 0.07 1.5E-06 55.4 9.0 57 20-77 101-161 (317)
365 PRK05439 pantothenate kinase; 95.3 0.082 1.8E-06 53.7 9.0 26 18-43 83-108 (311)
366 PLN03187 meiotic recombination 95.3 0.057 1.2E-06 55.9 7.9 59 19-78 124-186 (344)
367 TIGR01817 nifA Nif-specific re 95.3 0.3 6.5E-06 55.0 14.3 107 23-139 221-340 (534)
368 KOG0924 mRNA splicing factor A 95.3 0.079 1.7E-06 57.4 8.8 126 3-140 361-510 (1042)
369 TIGR00708 cobA cob(I)alamin ad 95.3 0.11 2.4E-06 47.6 8.7 119 20-140 4-140 (173)
370 COG2842 Uncharacterized ATPase 95.3 0.21 4.5E-06 49.3 11.1 98 22-127 95-192 (297)
371 TIGR02239 recomb_RAD51 DNA rep 95.3 0.058 1.2E-06 55.6 7.8 58 19-77 94-155 (316)
372 COG1120 FepC ABC-type cobalami 95.3 0.1 2.2E-06 51.1 9.0 23 21-43 28-50 (258)
373 cd03217 ABC_FeS_Assembly ABC-t 95.2 0.11 2.4E-06 49.8 9.3 23 22-44 27-49 (200)
374 PTZ00088 adenylate kinase 1; P 95.2 0.016 3.6E-07 56.4 3.6 20 24-43 9-28 (229)
375 PRK10875 recD exonuclease V su 95.2 0.046 9.9E-07 61.4 7.5 116 21-141 167-303 (615)
376 KOG1532 GTPase XAB1, interacts 95.2 0.079 1.7E-06 51.0 7.8 27 18-44 16-42 (366)
377 PRK03839 putative kinase; Prov 95.2 0.012 2.7E-07 55.4 2.6 21 23-43 2-22 (180)
378 PRK05973 replicative DNA helic 95.2 0.08 1.7E-06 51.6 8.1 41 20-62 63-103 (237)
379 PRK04040 adenylate kinase; Pro 95.2 0.015 3.2E-07 54.9 3.1 23 21-43 2-24 (188)
380 cd03281 ABC_MSH5_euk MutS5 hom 95.2 0.026 5.6E-07 54.6 4.8 23 21-43 29-51 (213)
381 TIGR03574 selen_PSTK L-seryl-t 95.2 0.037 7.9E-07 55.3 6.0 21 23-43 1-21 (249)
382 cd03232 ABC_PDR_domain2 The pl 95.2 0.11 2.4E-06 49.5 9.0 22 22-43 34-55 (192)
383 TIGR01360 aden_kin_iso1 adenyl 95.2 0.016 3.5E-07 55.1 3.3 24 20-43 2-25 (188)
384 PRK00625 shikimate kinase; Pro 95.1 0.014 2.9E-07 54.2 2.5 20 24-43 3-22 (173)
385 PF00910 RNA_helicase: RNA hel 95.1 0.012 2.6E-07 49.8 2.0 20 24-43 1-20 (107)
386 KOG1947 Leucine rich repeat pr 95.1 0.0021 4.6E-08 71.7 -3.4 44 722-765 400-445 (482)
387 PRK06217 hypothetical protein; 95.1 0.031 6.7E-07 52.8 5.0 22 23-44 3-24 (183)
388 PRK06002 fliI flagellum-specif 95.1 0.1 2.3E-06 55.5 9.3 86 21-109 165-263 (450)
389 PRK14721 flhF flagellar biosyn 95.1 0.092 2E-06 55.8 8.9 88 20-109 190-278 (420)
390 PRK15429 formate hydrogenlyase 95.1 0.093 2E-06 60.9 9.8 110 22-139 400-520 (686)
391 TIGR03881 KaiC_arch_4 KaiC dom 95.1 0.078 1.7E-06 52.3 7.9 40 20-61 19-58 (229)
392 COG0003 ArsA Predicted ATPase 95.1 0.031 6.7E-07 57.0 5.1 49 21-71 2-50 (322)
393 cd03215 ABC_Carb_Monos_II This 95.1 0.088 1.9E-06 49.7 8.0 23 22-44 27-49 (182)
394 cd03253 ABCC_ATM1_transporter 95.1 0.19 4E-06 49.9 10.6 23 22-44 28-50 (236)
395 PF00006 ATP-synt_ab: ATP synt 95.0 0.047 1E-06 52.5 6.0 84 22-109 16-114 (215)
396 KOG1947 Leucine rich repeat pr 95.0 0.0046 1E-07 69.1 -1.1 41 697-738 402-442 (482)
397 COG1703 ArgK Putative periplas 95.0 0.021 4.6E-07 56.0 3.5 53 17-69 47-99 (323)
398 PRK06995 flhF flagellar biosyn 95.0 0.079 1.7E-06 57.3 8.2 88 21-110 256-344 (484)
399 cd03245 ABCC_bacteriocin_expor 95.0 0.2 4.4E-06 48.9 10.6 24 21-44 30-53 (220)
400 PF08433 KTI12: Chromatin asso 95.0 0.042 9.1E-07 55.0 5.7 22 22-43 2-23 (270)
401 COG1124 DppF ABC-type dipeptid 95.0 0.03 6.5E-07 53.3 4.3 22 22-43 34-55 (252)
402 TIGR01420 pilT_fam pilus retra 95.0 0.05 1.1E-06 57.0 6.5 108 21-139 122-229 (343)
403 PRK06731 flhF flagellar biosyn 95.0 0.16 3.6E-06 50.6 9.7 88 21-111 75-165 (270)
404 PRK04328 hypothetical protein; 94.9 0.063 1.4E-06 53.5 6.9 40 20-61 22-61 (249)
405 TIGR00150 HI0065_YjeE ATPase, 94.9 0.025 5.4E-07 49.4 3.5 24 21-44 22-45 (133)
406 TIGR02974 phageshock_pspF psp 94.9 0.081 1.8E-06 55.0 7.9 21 23-43 24-44 (329)
407 cd01135 V_A-ATPase_B V/A-type 94.9 0.11 2.4E-06 51.4 8.3 88 22-109 70-175 (276)
408 PRK11608 pspF phage shock prot 94.9 0.094 2E-06 54.6 8.4 21 23-43 31-51 (326)
409 COG1419 FlhF Flagellar GTP-bin 94.9 0.082 1.8E-06 54.8 7.6 90 20-111 202-292 (407)
410 PF03969 AFG1_ATPase: AFG1-lik 94.9 0.034 7.4E-07 58.1 5.1 102 19-141 60-168 (362)
411 PF00154 RecA: recA bacterial 94.9 0.061 1.3E-06 54.8 6.6 82 21-109 53-140 (322)
412 PRK09544 znuC high-affinity zi 94.9 0.19 4.2E-06 50.1 10.2 23 22-44 31-53 (251)
413 cd03213 ABCG_EPDR ABCG transpo 94.9 0.21 4.5E-06 47.7 10.0 23 21-43 35-57 (194)
414 PF13481 AAA_25: AAA domain; P 94.9 0.11 2.5E-06 49.5 8.3 40 23-62 34-81 (193)
415 cd03254 ABCC_Glucan_exporter_l 94.9 0.23 5E-06 48.9 10.7 23 22-44 30-52 (229)
416 PRK00131 aroK shikimate kinase 94.9 0.018 3.9E-07 54.0 2.7 23 21-43 4-26 (175)
417 COG3640 CooC CO dehydrogenase 94.9 0.038 8.3E-07 52.2 4.6 43 23-66 2-44 (255)
418 PRK08149 ATP synthase SpaL; Va 94.8 0.11 2.3E-06 55.3 8.5 85 21-109 151-250 (428)
419 TIGR03498 FliI_clade3 flagella 94.8 0.11 2.3E-06 55.3 8.5 85 22-109 141-239 (418)
420 PRK15453 phosphoribulokinase; 94.8 0.14 2.9E-06 50.9 8.5 24 20-43 4-27 (290)
421 cd02023 UMPK Uridine monophosp 94.8 0.017 3.6E-07 55.6 2.3 21 23-43 1-21 (198)
422 COG5635 Predicted NTPase (NACH 94.8 0.031 6.6E-07 66.0 4.9 140 20-163 221-371 (824)
423 PRK03846 adenylylsulfate kinas 94.8 0.034 7.3E-07 53.3 4.4 25 19-43 22-46 (198)
424 PRK08533 flagellar accessory p 94.8 0.11 2.4E-06 51.0 8.0 49 20-72 23-71 (230)
425 cd02028 UMPK_like Uridine mono 94.8 0.023 4.9E-07 53.4 3.0 21 23-43 1-21 (179)
426 cd02024 NRK1 Nicotinamide ribo 94.8 0.018 3.9E-07 54.0 2.2 21 23-43 1-21 (187)
427 cd03233 ABC_PDR_domain1 The pl 94.7 0.18 3.8E-06 48.6 9.2 23 22-44 34-56 (202)
428 PTZ00035 Rad51 protein; Provis 94.7 0.16 3.6E-06 52.7 9.4 58 19-77 116-177 (337)
429 KOG0739 AAA+-type ATPase [Post 94.7 0.25 5.5E-06 48.3 9.7 145 21-187 166-329 (439)
430 COG1066 Sms Predicted ATP-depe 94.7 0.069 1.5E-06 54.9 6.3 79 22-109 94-177 (456)
431 cd00071 GMPK Guanosine monopho 94.7 0.024 5.2E-07 50.5 2.8 21 23-43 1-21 (137)
432 TIGR01069 mutS2 MutS2 family p 94.7 0.026 5.6E-07 65.4 3.7 24 20-43 321-344 (771)
433 cd03289 ABCC_CFTR2 The CFTR su 94.7 0.33 7.1E-06 49.1 11.3 22 22-43 31-52 (275)
434 cd00227 CPT Chloramphenicol (C 94.7 0.023 5E-07 53.2 2.8 22 22-43 3-24 (175)
435 COG1936 Predicted nucleotide k 94.7 0.025 5.4E-07 50.8 2.8 20 23-42 2-21 (180)
436 TIGR02322 phosphon_PhnN phosph 94.7 0.024 5.2E-07 53.4 2.9 22 22-43 2-23 (179)
437 PF03205 MobB: Molybdopterin g 94.7 0.043 9.3E-07 48.9 4.3 38 22-61 1-39 (140)
438 CHL00206 ycf2 Ycf2; Provisiona 94.6 0.46 9.9E-06 58.9 13.8 25 20-44 1629-1653(2281)
439 COG2019 AdkA Archaeal adenylat 94.6 0.032 6.8E-07 49.6 3.3 24 20-43 3-26 (189)
440 PRK13947 shikimate kinase; Pro 94.6 0.021 4.6E-07 53.4 2.4 21 23-43 3-23 (171)
441 PRK15455 PrkA family serine pr 94.6 0.02 4.2E-07 62.1 2.4 42 2-43 84-125 (644)
442 TIGR01447 recD exodeoxyribonuc 94.6 0.052 1.1E-06 60.8 5.7 116 21-141 160-297 (586)
443 cd02021 GntK Gluconate kinase 94.6 0.023 5E-07 51.7 2.5 21 23-43 1-21 (150)
444 COG0465 HflB ATP-dependent Zn 94.5 0.38 8.3E-06 53.0 12.0 44 1-44 160-206 (596)
445 PRK09280 F0F1 ATP synthase sub 94.5 0.13 2.8E-06 55.1 8.3 86 22-109 145-247 (463)
446 TIGR03263 guanyl_kin guanylate 94.5 0.028 6E-07 53.1 3.0 22 22-43 2-23 (180)
447 PRK12678 transcription termina 94.5 0.04 8.7E-07 59.5 4.5 86 22-109 417-512 (672)
448 TIGR00416 sms DNA repair prote 94.5 0.15 3.3E-06 55.4 9.0 40 20-61 93-132 (454)
449 COG0529 CysC Adenylylsulfate k 94.5 0.045 9.7E-07 49.3 4.0 30 19-50 21-50 (197)
450 PRK08972 fliI flagellum-specif 94.5 0.16 3.5E-06 53.9 8.8 84 22-109 163-261 (444)
451 KOG2123 Uncharacterized conser 94.5 0.0016 3.5E-08 62.3 -5.2 57 602-662 40-98 (388)
452 TIGR01359 UMP_CMP_kin_fam UMP- 94.5 0.022 4.7E-07 54.0 2.2 21 23-43 1-21 (183)
453 PF00142 Fer4_NifH: 4Fe-4S iro 94.5 0.054 1.2E-06 52.6 4.8 39 22-62 1-39 (273)
454 COG4133 CcmA ABC-type transpor 94.5 0.42 9.2E-06 43.8 10.1 22 22-43 29-50 (209)
455 KOG0736 Peroxisome assembly fa 94.5 0.24 5.3E-06 55.0 10.2 29 20-50 430-458 (953)
456 COG0542 clpA ATP-binding subun 94.5 0.12 2.5E-06 58.7 8.1 145 1-169 177-345 (786)
457 PRK10751 molybdopterin-guanine 94.5 0.038 8.3E-07 50.8 3.6 24 20-43 5-28 (173)
458 TIGR03522 GldA_ABC_ATP gliding 94.5 0.3 6.5E-06 50.3 10.7 23 22-44 29-51 (301)
459 cd03250 ABCC_MRP_domain1 Domai 94.4 0.62 1.4E-05 44.8 12.3 24 21-44 31-54 (204)
460 PRK09580 sufC cysteine desulfu 94.4 0.28 6E-06 49.1 10.2 23 22-44 28-50 (248)
461 COG4181 Predicted ABC-type tra 94.4 0.6 1.3E-05 42.0 10.6 125 22-147 37-214 (228)
462 COG5238 RNA1 Ran GTPase-activa 94.4 0.011 2.4E-07 56.7 -0.0 40 405-444 27-67 (388)
463 PRK05986 cob(I)alamin adenolsy 94.4 0.16 3.4E-06 47.4 7.4 119 20-140 21-158 (191)
464 PRK11823 DNA repair protein Ra 94.4 0.15 3.2E-06 55.4 8.6 40 20-61 79-118 (446)
465 PRK07594 type III secretion sy 94.4 0.15 3.3E-06 54.3 8.4 86 20-109 154-254 (433)
466 PTZ00185 ATPase alpha subunit; 94.4 0.19 4E-06 54.0 8.9 88 22-109 190-298 (574)
467 cd03287 ABC_MSH3_euk MutS3 hom 94.4 0.26 5.7E-06 47.8 9.4 24 20-43 30-53 (222)
468 COG0467 RAD55 RecA-superfamily 94.4 0.04 8.6E-07 55.5 3.9 41 19-61 21-61 (260)
469 PRK14737 gmk guanylate kinase; 94.3 0.044 9.5E-07 51.7 3.9 24 20-43 3-26 (186)
470 PF00560 LRR_1: Leucine Rich R 94.3 0.024 5.2E-07 32.0 1.3 22 409-434 1-22 (22)
471 COG0703 AroK Shikimate kinase 94.3 0.03 6.6E-07 50.8 2.6 27 23-51 4-30 (172)
472 TIGR00455 apsK adenylylsulfate 94.3 0.19 4E-06 47.6 8.2 24 20-43 17-40 (184)
473 PF02374 ArsA_ATPase: Anion-tr 94.3 0.042 9.2E-07 56.3 4.0 42 22-65 2-43 (305)
474 cd02029 PRK_like Phosphoribulo 94.3 0.11 2.4E-06 51.0 6.5 21 23-43 1-21 (277)
475 PRK13949 shikimate kinase; Pro 94.3 0.031 6.6E-07 51.9 2.6 21 23-43 3-23 (169)
476 TIGR03575 selen_PSTK_euk L-ser 94.3 0.11 2.4E-06 53.5 6.9 20 24-43 2-21 (340)
477 PLN02348 phosphoribulokinase 94.3 0.16 3.5E-06 52.9 8.0 25 19-43 47-71 (395)
478 cd02020 CMPK Cytidine monophos 94.2 0.03 6.6E-07 50.7 2.5 21 23-43 1-21 (147)
479 PRK05922 type III secretion sy 94.2 0.17 3.7E-06 53.8 8.3 84 22-109 158-256 (434)
480 PRK12597 F0F1 ATP synthase sub 94.2 0.16 3.4E-06 54.7 8.1 87 22-109 144-246 (461)
481 COG0541 Ffh Signal recognition 94.2 0.62 1.4E-05 48.7 12.0 74 4-79 80-157 (451)
482 PF13479 AAA_24: AAA domain 94.2 0.15 3.3E-06 49.4 7.4 31 22-62 4-34 (213)
483 PF00625 Guanylate_kin: Guanyl 94.2 0.036 7.9E-07 52.4 3.0 35 21-57 2-36 (183)
484 COG1643 HrpA HrpA-like helicas 94.2 0.27 5.9E-06 56.8 10.3 128 2-140 54-205 (845)
485 PLN02200 adenylate kinase fami 94.2 0.034 7.4E-07 54.6 2.8 25 19-43 41-65 (234)
486 cd01132 F1_ATPase_alpha F1 ATP 94.2 0.093 2E-06 51.9 5.8 84 22-109 70-170 (274)
487 cd03243 ABC_MutS_homologs The 94.2 0.059 1.3E-06 51.9 4.4 22 22-43 30-51 (202)
488 COG2401 ABC-type ATPase fused 94.2 0.054 1.2E-06 55.4 4.2 64 90-153 515-581 (593)
489 PRK13768 GTPase; Provisional 94.1 0.056 1.2E-06 53.9 4.4 36 22-59 3-38 (253)
490 PF13245 AAA_19: Part of AAA d 94.1 0.056 1.2E-06 42.1 3.4 23 21-43 10-33 (76)
491 cd01136 ATPase_flagellum-secre 94.1 0.36 7.7E-06 49.6 10.1 85 21-109 69-168 (326)
492 smart00534 MUTSac ATPase domai 94.1 0.027 5.8E-07 53.3 1.9 21 23-43 1-21 (185)
493 PRK10078 ribose 1,5-bisphospho 94.1 0.04 8.6E-07 52.2 3.0 23 22-44 3-25 (186)
494 cd00820 PEPCK_HprK Phosphoenol 94.1 0.049 1.1E-06 45.4 3.1 22 21-42 15-36 (107)
495 PRK13948 shikimate kinase; Pro 94.0 0.036 7.9E-07 51.8 2.6 24 20-43 9-32 (182)
496 PRK12339 2-phosphoglycerate ki 94.0 0.044 9.4E-07 52.1 3.2 23 21-43 3-25 (197)
497 PRK06793 fliI flagellum-specif 94.0 0.13 2.7E-06 54.9 6.9 86 21-109 156-255 (432)
498 cd01672 TMPK Thymidine monopho 94.0 0.098 2.1E-06 50.2 5.7 21 23-43 2-22 (200)
499 cd01124 KaiC KaiC is a circadi 94.0 0.051 1.1E-06 51.6 3.7 36 24-61 2-37 (187)
500 TIGR01287 nifH nitrogenase iro 94.0 0.055 1.2E-06 55.1 4.0 41 22-64 1-41 (275)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-75 Score=658.60 Aligned_cols=491 Identities=30% Similarity=0.492 Sum_probs=408.3
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCcc-ccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCC
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKD-VIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL 80 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~-~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~ 80 (794)
..+++.+.|.++ +.++|+|+||||+||||||+.++++.. +..+|+.++||.+|+.++...++.+|+..++...
T Consensus 166 ~~~kl~~~L~~d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 166 MLEKLWNRLMED------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred HHHHHHHHhccC------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 357788888876 349999999999999999999999977 8999999999999999999999999999998754
Q ss_pred CCCCC--HHHHHHHHHhHcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhhc-ccccceEEccCC
Q 045633 81 PNLGE--LNSLLEYIHTSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVARM-MESTDVISIKEL 157 (794)
Q Consensus 81 ~~~~~--~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~-~~~~~~~~l~~l 157 (794)
....+ .++.+..+.+.|++|||+|||||||+. .+|+.+..++|...+||+|++|||++.|+.. ++....++++.|
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L 317 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECL 317 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccccc
Confidence 43332 468889999999999999999999985 4599999999999889999999999999998 777889999999
Q ss_pred ChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCCCHHHHHHHHhhhhcc----cchhccc
Q 045633 158 SEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWQLILNSEMWQ----LEDFEKN 233 (794)
Q Consensus 158 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~----~~~~~~~ 233 (794)
+.+|||+||++.++..... .++.++++|++++++|+|+|||+.++|+.|+.+++..+|+++.+...+. .++..+.
T Consensus 318 ~~~eaW~LF~~~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 318 TPEEAWDLFQKKVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred CccccHHHHHHhhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 9999999999999876432 3345899999999999999999999999999999999999999876555 2233578
Q ss_pred chhHHHhhhcCCChHHHhhhhhcccCCCCcccChhHHHHHHHHcCCccccC-CcchhhhhhHHHHHHHhccCcccccCCC
Q 045633 234 LLAPLQLSYNDLPPEIKRCFLYCVVFPKDYDLDKGELVRLWMAQGYIEKKG-NIEMEMTGGWYFDFLASRSFFQDFDEDE 312 (794)
Q Consensus 234 ~~~~l~~sy~~L~~~~k~~fl~la~fp~~~~i~~~~li~~w~~~g~~~~~~-~~~~~~~~~~~l~~L~~~sll~~~~~~~ 312 (794)
+..++++||+.|+++.|.||+|||.||+|+.|+++.++.+|+||||+.+.. +..+++.|..|+++|++++|+......
T Consensus 397 i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~- 475 (889)
T KOG4658|consen 397 ILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE- 475 (889)
T ss_pred hHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc-
Confidence 999999999999999999999999999999999999999999999998844 678999999999999999999987654
Q ss_pred CCeEEEEeehHHHHHHHHhcc-----cccEEEEecCCCCCCcccccccCcceEEEEEecccccCcccccCCCCccEEEEc
Q 045633 313 EGIVTCKMHDIVHDFAQYLTR-----KEFAAIEVDGDENPLSLTSTCQEKLRHLTLMLGLRAKFPVSIFDAKKLRSLILF 387 (794)
Q Consensus 313 ~~~~~~~~h~li~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~ 387 (794)
+....|+|||++|++|.+++. .+..+...+ ...........+..+|++++.++.....+.. ..+++|++|.+.
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~-~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~ 553 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEENQIVSDG-VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQ 553 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccceEEECC-cCccccccccchhheeEEEEeccchhhccCC-CCCCccceEEEe
Confidence 556689999999999999998 555444432 1111122234567899999999988765544 456689999999
Q ss_pred ccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec---
Q 045633 388 DVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--- 462 (794)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--- 462 (794)
++.. +.......+|..++.|++|||++|.- +.++|++|++|.+||||++++ +.++|.++++|++|.+||
T Consensus 554 ~n~~---~l~~is~~ff~~m~~LrVLDLs~~~~---l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 554 RNSD---WLLEISGEFFRSLPLLRVLDLSGNSS---LSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred ecch---hhhhcCHHHHhhCcceEEEECCCCCc---cCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence 8832 24455567799999999999999874 789999999999999999999 999999999999999999
Q ss_pred CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCceEe
Q 045633 463 CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTV 510 (794)
Q Consensus 463 ~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~ 510 (794)
...+..+|..+..|.+||+|.+.+.....-...++.+.+|++|..+.+
T Consensus 628 ~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 628 TGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 334555566677799999999944432211223444555555554433
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-62 Score=589.00 Aligned_cols=666 Identities=20% Similarity=0.272 Sum_probs=438.1
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEe---cCCC-----------C-HHH
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV---SDPF-----------D-EFR 67 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~---~~~~-----------~-~~~ 67 (794)
.+++..+|..+ .+++++|+||||||+||||||+++|+ ++..+|++.+|++. .... . ...
T Consensus 193 l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~ 266 (1153)
T PLN03210 193 IAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLH 266 (1153)
T ss_pred HHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHH
Confidence 45566666433 34799999999999999999999998 78889999888752 1110 0 123
Q ss_pred HHHHHHHHhcCCCC-CCCCHHHHHHHHHhHcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhhcc
Q 045633 68 IAKAIIEGLEGSLP-NLGELNSLLEYIHTSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVARMM 146 (794)
Q Consensus 68 ~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 146 (794)
++++++.++..... .... ...+++.++++|+||||||||+ ..+|+.+.....+.++|++||||||++.++..+
T Consensus 267 l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~ 340 (1153)
T PLN03210 267 LQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAH 340 (1153)
T ss_pred HHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhc
Confidence 45555555433221 1111 2456778899999999999965 467888877666778899999999999998877
Q ss_pred cccceEEccCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCCCHHHHHHHHhhhhcc
Q 045633 147 ESTDVISIKELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWQLILNSEMWQ 226 (794)
Q Consensus 147 ~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~ 226 (794)
+...+|+|+.++.++|++||+++||+...+ ..++.+++++|+++|+|+||||+++|++|+. ++..+|+.++.+....
T Consensus 341 ~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~--~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~ 417 (1153)
T PLN03210 341 GIDHIYEVCLPSNELALEMFCRSAFKKNSP--PDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNG 417 (1153)
T ss_pred CCCeEEEecCCCHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhC
Confidence 778899999999999999999999976543 3568899999999999999999999999985 5789999999886543
Q ss_pred cchhcccchhHHHhhhcCCCh-HHHhhhhhcccCCCCcccChhHHHHHHHHcCCccccCCcchhhhhhHHHHHHHhccCc
Q 045633 227 LEDFEKNLLAPLQLSYNDLPP-EIKRCFLYCVVFPKDYDLDKGELVRLWMAQGYIEKKGNIEMEMTGGWYFDFLASRSFF 305 (794)
Q Consensus 227 ~~~~~~~~~~~l~~sy~~L~~-~~k~~fl~la~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sll 305 (794)
.+..+.++|++||+.|++ ..|.||+++|+||.+..++ .+..|.+.+.... +..++.|++++|+
T Consensus 418 ---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~ksLi 481 (1153)
T PLN03210 418 ---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDKSLI 481 (1153)
T ss_pred ---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhcCCE
Confidence 245799999999999987 6999999999999987654 3566776654322 1238889999999
Q ss_pred ccccCCCCCeEEEEeehHHHHHHHHhccccc------EEEEecCCCCCCcccccccCcceEEEEEeccccc---Cccccc
Q 045633 306 QDFDEDEEGIVTCKMHDIVHDFAQYLTRKEF------AAIEVDGDENPLSLTSTCQEKLRHLTLMLGLRAK---FPVSIF 376 (794)
Q Consensus 306 ~~~~~~~~~~~~~~~h~li~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~---~~~~~~ 376 (794)
+.... .+.||+++|++++.+++.+. .+++...+............+++.+++....... ....+.
T Consensus 482 ~~~~~------~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~ 555 (1153)
T PLN03210 482 HVRED------IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFK 555 (1153)
T ss_pred EEcCC------eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHh
Confidence 87542 48999999999999987653 1122111100000112345677777776554433 234567
Q ss_pred CCCCccEEEEcccCcch-hhhhhhhHHHhccC-CccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccc
Q 045633 377 DAKKLRSLILFDVTEDQ-SAASRGLQGLFDQL-TCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETC 452 (794)
Q Consensus 377 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i 452 (794)
.|++|+.|.+..+.... ......++..|..+ ..|+.|.+.++. +..+|..+ ...+|+.|++++ +..+|.++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~----l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP----LRCMPSNF-RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC----CCCCCCcC-CccCCcEEECcCcccccccccc
Confidence 78899998886542110 01111123334333 357888888777 67777766 467788888877 77777777
Q ss_pred cCCCccceec---CcCCCccCcccccccCCceeEe-cccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCccccc
Q 045633 453 CELLNLQTLD---CLSLKRLPQGIGKLINLRHLIF-DVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLG 528 (794)
Q Consensus 453 ~~L~~L~~L~---~~~l~~lp~~~~~L~~L~~L~l-~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 528 (794)
..+.+|+.|+ +..++.+|. ++.+++|++|++ +|+.+..+|..++++++|+.|++..+..+... ..-.
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L--------p~~i 701 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL--------PTGI 701 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc--------CCcC
Confidence 7777888777 445666764 677778888887 55667777777777788877776555432211 1111
Q ss_pred ccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcch------hH-HHHHH------
Q 045633 529 NLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEEN------EA-KQEAI------ 595 (794)
Q Consensus 529 ~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~------~~-~~~~~------ 595 (794)
++++|+ .+.+.++....... ....+|+.|+++++... .+|..+.... .. .....
T Consensus 702 ~l~sL~-~L~Lsgc~~L~~~p-------~~~~nL~~L~L~~n~i~-----~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 702 NLKSLY-RLNLSGCSRLKSFP-------DISTNISWLDLDETAIE-----EFPSNLRLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CCCCCC-EEeCCCCCCccccc-------cccCCcCeeecCCCccc-----cccccccccccccccccccchhhccccccc
Confidence 344444 55554443322211 11245666666665532 3333211000 00 00000
Q ss_pred --hhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccc
Q 045633 596 --CEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFL 673 (794)
Q Consensus 596 --~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~ 673 (794)
......+++|+.|++++|.....+ |.+++++++|+.|+|++|..++.+|....+++|+.|++++|..++.+|...
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~l--P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~- 845 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVEL--PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIS- 845 (1153)
T ss_pred cchhhhhccccchheeCCCCCCcccc--ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccc-
Confidence 001123468889999888654432 888889999999999999888888876678999999999998887766432
Q ss_pred cCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEE
Q 045633 674 GIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLE 753 (794)
Q Consensus 674 ~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~ 753 (794)
++|+.|++.+ +.++.++ ..+..+++|+.|++++|++++.+|..+..+++|+.++
T Consensus 846 ----------------------~nL~~L~Ls~-n~i~~iP---~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 846 ----------------------TNISDLNLSR-TGIEEVP---WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred ----------------------cccCEeECCC-CCCccCh---HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 3444444444 2333322 1223445555555555555555554444455555555
Q ss_pred eccCcccc
Q 045633 754 IGEAPIVE 761 (794)
Q Consensus 754 l~~~~~l~ 761 (794)
+++|++|+
T Consensus 900 l~~C~~L~ 907 (1153)
T PLN03210 900 FSDCGALT 907 (1153)
T ss_pred cCCCcccc
Confidence 55554443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3e-42 Score=355.34 Aligned_cols=275 Identities=39% Similarity=0.645 Sum_probs=221.9
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP 81 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 81 (794)
+.++|.+.|.... .+.++|+|+||||+||||||++++++.++..+|+.++||++++..+...++..|+.+++....
T Consensus 4 ~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 4 EIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp HHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred HHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccc
Confidence 6789999999853 389999999999999999999999965688999999999999999999999999999987743
Q ss_pred ---CCCCHHHHHHHHHhHcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhhcccc-cceEEccCC
Q 045633 82 ---NLGELNSLLEYIHTSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVARMMES-TDVISIKEL 157 (794)
Q Consensus 82 ---~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~-~~~~~l~~l 157 (794)
...+.++....+.+.++++++||||||||+ ...|+.+...++....|++||||||++.++..+.. ...+++++|
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWD--EEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S--HHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred ccccccccccccccchhhhccccceeeeeeecc--ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 346778899999999999999999999976 45777777777777779999999999998877654 678999999
Q ss_pred ChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCCCHHHHHHHHhhhhcccc---hhcccc
Q 045633 158 SEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWQLILNSEMWQLE---DFEKNL 234 (794)
Q Consensus 158 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~~---~~~~~~ 234 (794)
+.+||++||.+.++... ....+...+.+++|++.|+|+|+||+++|++|+.+.+...|+.+++....... +....+
T Consensus 158 ~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp -HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999987655 12224446778999999999999999999999765577899998876554432 245789
Q ss_pred hhHHHhhhcCCChHHHhhhhhcccCCCCcccChhHHHHHHHHcCCcccc
Q 045633 235 LAPLQLSYNDLPPEIKRCFLYCVVFPKDYDLDKGELVRLWMAQGYIEKK 283 (794)
Q Consensus 235 ~~~l~~sy~~L~~~~k~~fl~la~fp~~~~i~~~~li~~w~~~g~~~~~ 283 (794)
..++.+||+.|+++.|+||+|||+||+++.++.+.++++|+++|++...
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999999999999999999999998754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=4.5e-24 Score=257.74 Aligned_cols=386 Identities=21% Similarity=0.200 Sum_probs=183.5
Q ss_pred CcceEEEEEecccc-cCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCc
Q 045633 356 EKLRHLTLMLGLRA-KFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENL 434 (794)
Q Consensus 356 ~~~r~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l 434 (794)
..++.|.+..+... ..|..+..+++|++|+++++ .....+|..+.++++|++|++++|.+ ...+|..++++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n-----~l~~~~p~~~~~l~~L~~L~L~~n~l---~~~~p~~l~~l 211 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-----VLVGKIPNSLTNLTSLEFLTLASNQL---VGQIPRELGQM 211 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccC-----cccccCChhhhhCcCCCeeeccCCCC---cCcCChHHcCc
Confidence 34555555554443 23444555555555555554 12222344455555555555555553 23345555555
Q ss_pred cCCcEEeccC---CCccCccccCCCccceec--CcCC-CccCcccccccCCceeEecccccc-cCCCCCCCCCCCCccCc
Q 045633 435 IHLRYLQLSS---VEELPETCCELLNLQTLD--CLSL-KRLPQGIGKLINLRHLIFDVFGVD-YVPNGFERLTGLRTLSG 507 (794)
Q Consensus 435 ~~L~~L~L~~---~~~lp~~i~~L~~L~~L~--~~~l-~~lp~~~~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~~ 507 (794)
.+|++|+|++ ...+|..++++.+|++|+ .+.+ ..+|..++++++|++|+++.|.+. .+|..+.++++|+.|++
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 5555555554 224555555555555555 2222 234555555555555555544443 34445555555555553
Q ss_pred eEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcc
Q 045633 508 FTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEE 587 (794)
Q Consensus 508 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~ 587 (794)
..+.. .+. .-..+.++++|+ .+.+....- .......+..+++|+.|++++|...
T Consensus 292 s~n~l-~~~------~p~~~~~l~~L~-~L~l~~n~~----~~~~~~~~~~l~~L~~L~L~~n~l~-------------- 345 (968)
T PLN00113 292 SDNSL-SGE------IPELVIQLQNLE-ILHLFSNNF----TGKIPVALTSLPRLQVLQLWSNKFS-------------- 345 (968)
T ss_pred cCCee-ccC------CChhHcCCCCCc-EEECCCCcc----CCcCChhHhcCCCCCEEECcCCCCc--------------
Confidence 32211 000 001112223333 333322110 1111223444555666666555432
Q ss_pred hhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeecccccce
Q 045633 588 NEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMVSVK 666 (794)
Q Consensus 588 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~~l~ 666 (794)
...+..+..+++|+.|++++|...... |.++..+++|+.|++++|.....+|. ++.+++|+.|++++|....
T Consensus 346 -----~~~p~~l~~~~~L~~L~Ls~n~l~~~~--p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 346 -----GEIPKNLGKHNNLTVLDLSTNNLTGEI--PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred -----CcCChHHhCCCCCcEEECCCCeeEeeC--ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 111223334444555555444433221 34444444444444444433323332 3444444444444444333
Q ss_pred EeCcccccCcccCCCccccccC----CCccccC-----------------------CccceeeccccccccccccCCCCc
Q 045633 667 KVGDEFLGIGIRDHNHIHGTFS----SSSVVAF-----------------------PKLEKLDLWIMLQLEEWDFGKEDI 719 (794)
Q Consensus 667 ~~~~~~~~~~~l~~~~l~~~~~----~~~~~~~-----------------------~~L~~L~l~~~~~l~~~~~~~~~~ 719 (794)
.+|..+.....+..++++++.. +.....+ ++|+.|+++++. +.. ..+..+
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~-l~~--~~~~~~ 495 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ-FSG--AVPRKL 495 (968)
T ss_pred ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCc-cCC--ccChhh
Confidence 3333333333333333322110 1111233 445555555432 111 112334
Q ss_pred cCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCccccccccccCCCCCccccccceeeeccccccC
Q 045633 720 TIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPIVEQNFKKDTGKDWSKISHIPNILISGRYEQG 790 (794)
Q Consensus 720 ~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 790 (794)
..+++|+.|++++|.....+|..+.++++|++|++++|..... ....+..+..+..+.+++|.+.+
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ-----IPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc-----CChhHhCcccCCEEECCCCcccc
Confidence 5778888888888866567888888888899999988875322 22345677788888888888764
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=3.7e-24 Score=258.48 Aligned_cols=387 Identities=20% Similarity=0.215 Sum_probs=202.2
Q ss_pred cCcceEEEEEecccc-cCccccc-CCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCcccc
Q 045633 355 QEKLRHLTLMLGLRA-KFPVSIF-DAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLE 432 (794)
Q Consensus 355 ~~~~r~l~l~~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~ 432 (794)
...++.|.+..+... .+|..+. .+++|++|+++++. ....+| ...+++|++|++++|.+ ...+|..++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~-----l~~~~p--~~~l~~L~~L~Ls~n~~---~~~~p~~~~ 161 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN-----FTGSIP--RGSIPNLETLDLSNNML---SGEIPNDIG 161 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc-----cccccC--ccccCCCCEEECcCCcc---cccCChHHh
Confidence 345666666665543 3444443 56667777766652 111122 13456677777776663 235566677
Q ss_pred CccCCcEEeccC---CCccCccccCCCccceec--CcCC-CccCcccccccCCceeEecccccc-cCCCCCCCCCCCCcc
Q 045633 433 NLIHLRYLQLSS---VEELPETCCELLNLQTLD--CLSL-KRLPQGIGKLINLRHLIFDVFGVD-YVPNGFERLTGLRTL 505 (794)
Q Consensus 433 ~l~~L~~L~L~~---~~~lp~~i~~L~~L~~L~--~~~l-~~lp~~~~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L 505 (794)
++.+|++|+|++ ...+|..++++.+|++|+ .+.+ ..+|..++++++|++|+++.|.+. .+|..++++++|++|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 777777777766 345666777777777776 2333 345666777777777777666655 466667777777777
Q ss_pred CceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccC
Q 045633 506 SGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMN 585 (794)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~ 585 (794)
++..+.. .+ .....+.++++|+ .+.+....- .......+..+++|+.|++++|...
T Consensus 242 ~L~~n~l-~~------~~p~~l~~l~~L~-~L~L~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~l~------------ 297 (968)
T PLN00113 242 DLVYNNL-TG------PIPSSLGNLKNLQ-YLFLYQNKL----SGPIPPSIFSLQKLISLDLSDNSLS------------ 297 (968)
T ss_pred ECcCcee-cc------ccChhHhCCCCCC-EEECcCCee----eccCchhHhhccCcCEEECcCCeec------------
Confidence 6543321 10 0111233334444 444432211 1112233455667777777766532
Q ss_pred cchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeeccccc
Q 045633 586 EENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMVS 664 (794)
Q Consensus 586 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~~ 664 (794)
...+..+..+++|+.|++++|...... |.++..+++|+.|++++|.....+|. ++.+++|+.|++++|..
T Consensus 298 -------~~~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 298 -------GEIPELVIQLQNLEILHLFSNNFTGKI--PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred -------cCCChhHcCCCCCcEEECCCCccCCcC--ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 122334455666777777666654432 56666667777777776654444554 56666777777766554
Q ss_pred ceEeCcccccCcccCCCccccc----cCCCccccCCccceeecccccccccccc---------------------CCCCc
Q 045633 665 VKKVGDEFLGIGIRDHNHIHGT----FSSSSVVAFPKLEKLDLWIMLQLEEWDF---------------------GKEDI 719 (794)
Q Consensus 665 l~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~L~~L~l~~~~~l~~~~~---------------------~~~~~ 719 (794)
...+|..+.....+..+.+.++ ..+..+..+++|+.|++.++.--...+. .+..+
T Consensus 369 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 448 (968)
T PLN00113 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448 (968)
T ss_pred EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence 4445554444444444333321 1112234455555555554321111100 01112
Q ss_pred cCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCccccccccccCCCCCccccccceeeeccccccC
Q 045633 720 TIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPIVEQNFKKDTGKDWSKISHIPNILISGRYEQG 790 (794)
Q Consensus 720 ~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 790 (794)
..+++|+.|++++|.....+|..+ ..++|+.|++++|..... ....+.++..+..+.+++|.+.+
T Consensus 449 ~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 449 WDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGA-----VPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred ccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCc-----cChhhhhhhccCEEECcCCccee
Confidence 245555555555554444445433 245566666666543211 11234455666666676666653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=9.8e-26 Score=230.44 Aligned_cols=339 Identities=20% Similarity=0.240 Sum_probs=242.3
Q ss_pred CcceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCcc
Q 045633 356 EKLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLI 435 (794)
Q Consensus 356 ~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~ 435 (794)
..++.|.+.......+|..+..+.+|.+|.+.++ ... .+.+-+..++.||.+.+..|++. -.-+|..|..|.
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-----~L~-~vhGELs~Lp~LRsv~~R~N~LK--nsGiP~diF~l~ 103 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-----QLI-SVHGELSDLPRLRSVIVRDNNLK--NSGIPTDIFRLK 103 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-----hhH-hhhhhhccchhhHHHhhhccccc--cCCCCchhcccc
Confidence 3455566666666667888888888888888777 222 23444677888888888888731 234788888888
Q ss_pred CCcEEeccC--CCccCccccCCCccceec--CcCCCccCcc-cccccCCceeEecccccccCCCCCCCCCCCCccCceEe
Q 045633 436 HLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQG-IGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTV 510 (794)
Q Consensus 436 ~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~ 510 (794)
.|..||||. +++.|..+..-+++-+|+ .+++..+|.. +.+|+.|-.|+++.|++..+|+.+.+|.+||+|.+...
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC
Confidence 888999987 888888888888888888 6778888876 66888888889999999999988888888888875432
Q ss_pred ccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhH
Q 045633 511 ARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEA 590 (794)
Q Consensus 511 ~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~ 590 (794)
. ...+.+..|+.+++|. .|.+.+. ......++.++.++.+|..+++|.|...
T Consensus 184 P-------L~hfQLrQLPsmtsL~-vLhms~T---qRTl~N~Ptsld~l~NL~dvDlS~N~Lp----------------- 235 (1255)
T KOG0444|consen 184 P-------LNHFQLRQLPSMTSLS-VLHMSNT---QRTLDNIPTSLDDLHNLRDVDLSENNLP----------------- 235 (1255)
T ss_pred h-------hhHHHHhcCccchhhh-hhhcccc---cchhhcCCCchhhhhhhhhccccccCCC-----------------
Confidence 2 2333445555555554 4444322 2222234455667778888888877632
Q ss_pred HHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeecccc-cceEe
Q 045633 591 KQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMV-SVKKV 668 (794)
Q Consensus 591 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~-~l~~~ 668 (794)
.+++.+..+++|+.|+|++|...++ .-......+|++|+++.| .++.+|. +.+|++|+.|.+.++. ..+.+
T Consensus 236 ---~vPecly~l~~LrrLNLS~N~iteL---~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 236 ---IVPECLYKLRNLRRLNLSGNKITEL---NMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred ---cchHHHhhhhhhheeccCcCceeee---eccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCC
Confidence 3455666778888888888887766 444555678888888888 4566666 7788888888876532 11222
Q ss_pred CcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCC
Q 045633 669 GDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTT 748 (794)
Q Consensus 669 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~ 748 (794)
|. -++.+.+|+.+...+ ++|+-. |++++.++.|++|.++.| .|-++|+.+.-++.
T Consensus 309 PS--------------------GIGKL~~Levf~aan-N~LElV---PEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~ 363 (1255)
T KOG0444|consen 309 PS--------------------GIGKLIQLEVFHAAN-NKLELV---PEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPD 363 (1255)
T ss_pred cc--------------------chhhhhhhHHHHhhc-cccccC---chhhhhhHHHHHhccccc-ceeechhhhhhcCC
Confidence 22 267888888888877 455544 456778999999999777 78889999888999
Q ss_pred ccEEEeccCccccc
Q 045633 749 LESLEIGEAPIVEQ 762 (794)
Q Consensus 749 L~~L~l~~~~~l~~ 762 (794)
|+.|++.+||++.-
T Consensus 364 l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 364 LKVLDLRENPNLVM 377 (1255)
T ss_pred cceeeccCCcCccC
Confidence 99999999998754
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=4.9e-23 Score=209.63 Aligned_cols=365 Identities=19% Similarity=0.255 Sum_probs=226.9
Q ss_pred ccCcceEEEEEecccccC-cccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-Cccc
Q 045633 354 CQEKLRHLTLMLGLRAKF-PVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGL 431 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i 431 (794)
.+...+.|.+.++..... +..+.++++|+.+++..+ ....+|.+.....+|+.|+|.+|. +..+ .+++
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N------~Lt~IP~f~~~sghl~~L~L~~N~----I~sv~se~L 145 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN------ELTRIPRFGHESGHLEKLDLRHNL----ISSVTSEEL 145 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccc------hhhhcccccccccceeEEeeeccc----cccccHHHH
Confidence 455566666666655543 233456677777777665 223345544445557777777776 4444 3446
Q ss_pred cCccCCcEEeccC--CCccCc-cccCCCccceec--CcCCCccCc-ccccccCCceeEecccccccCC-CCCCCCCCCCc
Q 045633 432 ENLIHLRYLQLSS--VEELPE-TCCELLNLQTLD--CLSLKRLPQ-GIGKLINLRHLIFDVFGVDYVP-NGFERLTGLRT 504 (794)
Q Consensus 432 ~~l~~L~~L~L~~--~~~lp~-~i~~L~~L~~L~--~~~l~~lp~-~~~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~ 504 (794)
..++.||.||||. |.++|. ++..=.++++|+ .+.++.+-. .|.+|.+|..|.++.|+++.+| ..+.+|++|+.
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence 6677777777776 666664 355556777777 556666643 3677777778888888888777 44666788877
Q ss_pred cCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCcccccccccc
Q 045633 505 LSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWM 584 (794)
Q Consensus 505 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~ 584 (794)
|++..... .. .....+.+|..|++|+ +.- +.+.......|-.+..+++|+|+.|...
T Consensus 226 LdLnrN~i-ri---ve~ltFqgL~Sl~nlk--lqr------N~I~kL~DG~Fy~l~kme~l~L~~N~l~----------- 282 (873)
T KOG4194|consen 226 LDLNRNRI-RI---VEGLTFQGLPSLQNLK--LQR------NDISKLDDGAFYGLEKMEHLNLETNRLQ----------- 282 (873)
T ss_pred hhccccce-ee---ehhhhhcCchhhhhhh--hhh------cCcccccCcceeeecccceeecccchhh-----------
Confidence 77533211 10 1122233333333332 111 1222223345667778888888877643
Q ss_pred CcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC--CCCCCCcceeeeccc
Q 045633 585 NEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP--LGKLPSLEILRIAEM 662 (794)
Q Consensus 585 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~~L~l~~~ 662 (794)
.-.-..+..++.|+.|+++.|.+.++. ++.++.+++|+.|+|++| .+..++. +..|..|+.|+|+.
T Consensus 283 --------~vn~g~lfgLt~L~~L~lS~NaI~rih--~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~- 350 (873)
T KOG4194|consen 283 --------AVNEGWLFGLTSLEQLDLSYNAIQRIH--IDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH- 350 (873)
T ss_pred --------hhhcccccccchhhhhccchhhhheee--cchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-
Confidence 222345667788888888888777663 556677788888888887 4555554 66778888888875
Q ss_pred ccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCC--CCccCCCcccEEeeccCccCcCCC
Q 045633 663 VSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGK--EDITIMPQIKSLMIFSCEKLKSLP 740 (794)
Q Consensus 663 ~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~~l~~L~~L~l~~c~~l~~ip 740 (794)
+.+..+.+.. +.++.+|++|+|++. .+ +|+.++ ..+..+|+|++|.+.|| +++.||
T Consensus 351 Nsi~~l~e~a-------------------f~~lssL~~LdLr~N-~l-s~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~ 408 (873)
T KOG4194|consen 351 NSIDHLAEGA-------------------FVGLSSLHKLDLRSN-EL-SWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIP 408 (873)
T ss_pred cchHHHHhhH-------------------HHHhhhhhhhcCcCC-eE-EEEEecchhhhccchhhhheeecCc-eeeecc
Confidence 4455554432 456788999998873 22 344332 34678999999999999 899998
Q ss_pred c-CccCCCCccEEEeccCccccccccccCCCCCccccccceeeec-cccccCC
Q 045633 741 D-QLLRSTTLESLEIGEAPIVEQNFKKDTGKDWSKISHIPNILIS-GRYEQGG 791 (794)
Q Consensus 741 ~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~ 791 (794)
. .+..+++|++|++.+|+...... ..+.++ ++..+.+. ++++|.+
T Consensus 409 krAfsgl~~LE~LdL~~NaiaSIq~-----nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDNAIASIQP-----NAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred hhhhccCcccceecCCCCcceeecc-----cccccc-hhhhhhhcccceEEec
Confidence 6 45678999999999998744322 234444 55555533 5555543
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=8.5e-24 Score=205.84 Aligned_cols=141 Identities=24% Similarity=0.276 Sum_probs=93.7
Q ss_pred ceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCC
Q 045633 358 LRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHL 437 (794)
Q Consensus 358 ~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L 437 (794)
+..+.+..+.....|++++....++.|+++++ .. ..+|..+.....|+.|+.++|. ..++|++|+.+..|
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-----~l-s~lp~~i~s~~~l~~l~~s~n~----~~el~~~i~~~~~l 139 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-----KL-SELPEQIGSLISLVKLDCSSNE----LKELPDSIGRLLDL 139 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccc-----hH-hhccHHHhhhhhhhhhhccccc----eeecCchHHHHhhh
Confidence 44455555666666777777777777777766 22 2344446666677777777777 66677777777777
Q ss_pred cEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCce
Q 045633 438 RYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGF 508 (794)
Q Consensus 438 ~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~ 508 (794)
..|+..+ +.++|..+..+.+|..++ .++++.+|...-+|+.|++|+...|-+..+|+.++.|.+|..|++.
T Consensus 140 ~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 140 EDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhh
Confidence 7776665 777777777777666666 5666666666555777777777666777777777777776666643
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=3.5e-23 Score=211.95 Aligned_cols=333 Identities=25% Similarity=0.239 Sum_probs=247.8
Q ss_pred ccCcceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccC
Q 045633 354 CQEKLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLEN 433 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~ 433 (794)
..+++.||++..+...++...+.+++.||++.+.++.. ...+.+++ +-.+..|.+|||+.|+ +.+.|..+.+
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~L---KnsGiP~d-iF~l~dLt~lDLShNq----L~EvP~~LE~ 124 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNL---KNSGIPTD-IFRLKDLTILDLSHNQ----LREVPTNLEY 124 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccc---ccCCCCch-hcccccceeeecchhh----hhhcchhhhh
Confidence 46778899999998888888888999999999988732 22333445 5579999999999999 8999999999
Q ss_pred ccCCcEEeccC--CCccCcc-ccCCCccceec--CcCCCccCcccccccCCceeEecccccccCC-CCCCCCCCCCccCc
Q 045633 434 LIHLRYLQLSS--VEELPET-CCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVP-NGFERLTGLRTLSG 507 (794)
Q Consensus 434 l~~L~~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~~ 507 (794)
-+++-.|+||+ |+.+|.+ +.+|..|-.|| .+.+..||..+..|..|++|.+++|.+.... ..+..|++|++|.+
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 99999999998 9999987 56899999999 6789999999999999999999988776542 33455777777776
Q ss_pred eEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcc
Q 045633 508 FTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEE 587 (794)
Q Consensus 508 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~ 587 (794)
.+....-. .....+..+.+|. .++++. .++.. .+..+-.+++|+.|+||+|.++. +
T Consensus 205 s~TqRTl~---N~Ptsld~l~NL~----dvDlS~-N~Lp~----vPecly~l~~LrrLNLS~N~ite-----L------- 260 (1255)
T KOG0444|consen 205 SNTQRTLD---NIPTSLDDLHNLR----DVDLSE-NNLPI----VPECLYKLRNLRRLNLSGNKITE-----L------- 260 (1255)
T ss_pred ccccchhh---cCCCchhhhhhhh----hccccc-cCCCc----chHHHhhhhhhheeccCcCceee-----e-------
Confidence 55444222 1222333333333 333321 11121 23456678899999999998652 1
Q ss_pred hhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCC-CCcCCC-CCCCCCcceeeecccccc
Q 045633 588 NEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPR-CEIMPP-LGKLPSLEILRIAEMVSV 665 (794)
Q Consensus 588 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~-l~~l~~-l~~L~~L~~L~l~~~~~l 665 (794)
--......+|++|+++.|....+ |..+..+++|+.|++.+|.. .+.+|+ +|+|.+|+.+..++ +++
T Consensus 261 --------~~~~~~W~~lEtLNlSrNQLt~L---P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~L 328 (1255)
T KOG0444|consen 261 --------NMTEGEWENLETLNLSRNQLTVL---PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKL 328 (1255)
T ss_pred --------eccHHHHhhhhhhccccchhccc---hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-ccc
Confidence 11222345799999999998887 99999999999999999853 357887 99999999999995 668
Q ss_pred eEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccC
Q 045633 666 KKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLR 745 (794)
Q Consensus 666 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~ 745 (794)
+-.|++ +..++.|+.|.|.. +.|-.+ |+++.-+|.|+.|+++.||+|..-|.--..
T Consensus 329 ElVPEg--------------------lcRC~kL~kL~L~~-NrLiTL---PeaIHlL~~l~vLDlreNpnLVMPPKP~da 384 (1255)
T KOG0444|consen 329 ELVPEG--------------------LCRCVKLQKLKLDH-NRLITL---PEAIHLLPDLKVLDLRENPNLVMPPKPNDA 384 (1255)
T ss_pred ccCchh--------------------hhhhHHHHHhcccc-cceeec---hhhhhhcCCcceeeccCCcCccCCCCcchh
Confidence 888876 45788999999876 444333 667888999999999999999766543222
Q ss_pred CCCccEEEe
Q 045633 746 STTLESLEI 754 (794)
Q Consensus 746 l~~L~~L~l 754 (794)
-++|+.-+|
T Consensus 385 ~~~lefYNI 393 (1255)
T KOG0444|consen 385 RKKLEFYNI 393 (1255)
T ss_pred hhcceeeec
Confidence 345555444
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1e-19 Score=219.53 Aligned_cols=328 Identities=20% Similarity=0.241 Sum_probs=201.9
Q ss_pred cccccCC-CCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC---CCc
Q 045633 372 PVSIFDA-KKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS---VEE 447 (794)
Q Consensus 372 ~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~---~~~ 447 (794)
|..+..+ .+|+.|.+.++. ...+|..| .+.+|+.|++.++. +..+|..+..+++|++|+|++ ++.
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~------l~~lP~~f-~~~~L~~L~L~~s~----l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ 649 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYP------LRCMPSNF-RPENLVKLQMQGSK----LEKLWDGVHSLTGLRNIDLRGSKNLKE 649 (1153)
T ss_pred CcchhhcCcccEEEEecCCC------CCCCCCcC-CccCCcEEECcCcc----ccccccccccCCCCCEEECCCCCCcCc
Confidence 4444333 357777776652 12233333 45677777777776 666777777777777777765 566
Q ss_pred cCccccCCCccceec---CcCCCccCcccccccCCceeEe-cccccccCCCCCCCCCCCCccCceEeccccCCCC-----
Q 045633 448 LPETCCELLNLQTLD---CLSLKRLPQGIGKLINLRHLIF-DVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYS----- 518 (794)
Q Consensus 448 lp~~i~~L~~L~~L~---~~~l~~lp~~~~~L~~L~~L~l-~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~----- 518 (794)
+| .++.+.+|++|+ |..+..+|..+++|++|+.|++ +|+.+..+|..+ ++++|+.|.+.++..+.....
T Consensus 650 ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL 727 (1153)
T PLN03210 650 IP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNI 727 (1153)
T ss_pred CC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCc
Confidence 66 366677777776 6667777777777777777777 456677777655 566777666554432211000
Q ss_pred ----CCccCccccc---ccccCCCeeEEccccCCC---ChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcch
Q 045633 519 ----SKACNLEGLG---NLNHLRGFLRICGLGNVT---AADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEEN 588 (794)
Q Consensus 519 ----~~~~~l~~l~---~L~~L~~~l~~~~~~~~~---~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~ 588 (794)
.....+..++ .+++|. .+.+..+.... .............++|+.|++++|...
T Consensus 728 ~~L~L~~n~i~~lP~~~~l~~L~-~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l--------------- 791 (1153)
T PLN03210 728 SWLDLDETAIEEFPSNLRLENLD-ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL--------------- 791 (1153)
T ss_pred CeeecCCCccccccccccccccc-cccccccchhhccccccccchhhhhccccchheeCCCCCCc---------------
Confidence 0000001110 122222 22222111000 000000001122457788888776532
Q ss_pred hHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEe
Q 045633 589 EAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKV 668 (794)
Q Consensus 589 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~ 668 (794)
..++..++.+++|+.|++++|.....+ |..+ ++++|+.|++++|..+..+|.+ .++|+.|+|++ +.++.+
T Consensus 792 ----~~lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~-n~i~~i 861 (1153)
T PLN03210 792 ----VELPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSR-TGIEEV 861 (1153)
T ss_pred ----cccChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCEEECCCCCcccccccc--ccccCEeECCC-CCCccC
Confidence 234556778999999999998765543 6555 7899999999999988887764 37899999987 456666
Q ss_pred CcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCc-----
Q 045633 669 GDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQL----- 743 (794)
Q Consensus 669 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~----- 743 (794)
|.. +..+++|+.|++.+|++++.++.. +..+++|+.|++++|+.|+.++-.-
T Consensus 862 P~s--------------------i~~l~~L~~L~L~~C~~L~~l~~~---~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~ 918 (1153)
T PLN03210 862 PWW--------------------IEKFSNLSFLDMNGCNNLQRVSLN---ISKLKHLETVDFSDCGALTEASWNGSPSEV 918 (1153)
T ss_pred hHH--------------------HhcCCCCCEEECCCCCCcCccCcc---cccccCCCeeecCCCcccccccCCCCchhh
Confidence 543 567899999999999999988654 3478999999999999987654210
Q ss_pred --------cCCCCccEEEeccCcccc
Q 045633 744 --------LRSTTLESLEIGEAPIVE 761 (794)
Q Consensus 744 --------~~l~~L~~L~l~~~~~l~ 761 (794)
..+++...+.+.+|.++.
T Consensus 919 ~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 919 AMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred hhhcccccccCCchhccccccccCCC
Confidence 123344556677777664
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=6.6e-21 Score=194.24 Aligned_cols=338 Identities=20% Similarity=0.195 Sum_probs=244.8
Q ss_pred ccCcceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC-cccc
Q 045633 354 CQEKLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-RGLE 432 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~i~ 432 (794)
...++..+.+..+....+|.-.....+++.|.+.++. +...-.+.+.-++.||+|||+.|. +..+| .++.
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-----I~sv~se~L~~l~alrslDLSrN~----is~i~~~sfp 170 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-----ISSVTSEELSALPALRSLDLSRNL----ISEIPKPSFP 170 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccc-----cccccHHHHHhHhhhhhhhhhhch----hhcccCCCCC
Confidence 3567888888888888888777777889999999883 333334557778899999999999 77776 3466
Q ss_pred CccCCcEEeccC--CCccCc-cccCCCccceec--CcCCCccCc-ccccccCCceeEecccccccCC-CCCCCCCCCCcc
Q 045633 433 NLIHLRYLQLSS--VEELPE-TCCELLNLQTLD--CLSLKRLPQ-GIGKLINLRHLIFDVFGVDYVP-NGFERLTGLRTL 505 (794)
Q Consensus 433 ~l~~L~~L~L~~--~~~lp~-~i~~L~~L~~L~--~~~l~~lp~-~~~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L 505 (794)
.-.++++|+|++ |..+-. .|..|.+|-+|. .++++.+|. .|.+|++|+.|++..|.+..+- -.+..|.+|+.|
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 778999999998 777754 588888999888 678999987 4788999999999999988762 457788888888
Q ss_pred CceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccC
Q 045633 506 SGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMN 585 (794)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~ 585 (794)
.+-..+ +....+.....+. ++..| .|..+.+..+ ....+-+++.|+.|++|+|.+.
T Consensus 251 klqrN~-I~kL~DG~Fy~l~---kme~l--~L~~N~l~~v------n~g~lfgLt~L~~L~lS~NaI~------------ 306 (873)
T KOG4194|consen 251 KLQRND-ISKLDDGAFYGLE---KMEHL--NLETNRLQAV------NEGWLFGLTSLEQLDLSYNAIQ------------ 306 (873)
T ss_pred hhhhcC-cccccCcceeeec---cccee--ecccchhhhh------hcccccccchhhhhccchhhhh------------
Confidence 754322 1111112233333 33333 2333333222 3345778899999999999753
Q ss_pred cchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC--CCCCCCcceeeecccc
Q 045633 586 EENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP--LGKLPSLEILRIAEMV 663 (794)
Q Consensus 586 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~~L~l~~~~ 663 (794)
....+++...++|+.|+|+.|...++. +..+..++.|++|.|+.| .+..+.. +..+.+|+.|+|+++.
T Consensus 307 -------rih~d~WsftqkL~~LdLs~N~i~~l~--~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 307 -------RIHIDSWSFTQKLKELDLSSNRITRLD--EGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred -------eeecchhhhcccceeEeccccccccCC--hhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCe
Confidence 233567788899999999999988873 667888999999999999 4555544 6779999999999743
Q ss_pred cceE-eCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcC
Q 045633 664 SVKK-VGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQ 742 (794)
Q Consensus 664 ~l~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~ 742 (794)
+.- +.+... .+.++++|+.|.+.| ++++.++. .++..++.|+.|++.+|+.-..=|..
T Consensus 377 -ls~~IEDaa~-----------------~f~gl~~LrkL~l~g-Nqlk~I~k--rAfsgl~~LE~LdL~~NaiaSIq~nA 435 (873)
T KOG4194|consen 377 -LSWCIEDAAV-----------------AFNGLPSLRKLRLTG-NQLKSIPK--RAFSGLEALEHLDLGDNAIASIQPNA 435 (873)
T ss_pred -EEEEEecchh-----------------hhccchhhhheeecC-ceeeecch--hhhccCcccceecCCCCcceeecccc
Confidence 332 222211 156799999999998 68888763 45668999999999999544334555
Q ss_pred ccCCCCccEEEecc
Q 045633 743 LLRSTTLESLEIGE 756 (794)
Q Consensus 743 ~~~l~~L~~L~l~~ 756 (794)
+..+ .|++|.+..
T Consensus 436 Fe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 436 FEPM-ELKELVMNS 448 (873)
T ss_pred cccc-hhhhhhhcc
Confidence 5544 888886643
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=1.4e-21 Score=190.45 Aligned_cols=139 Identities=24% Similarity=0.321 Sum_probs=115.2
Q ss_pred eEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCc
Q 045633 359 RHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLR 438 (794)
Q Consensus 359 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~ 438 (794)
..+.+.++......+.+.++..+.+|.+.++ ... .+|..++.+..++.|+.+.|+ +.++|+.++.+..|+
T Consensus 48 ~~lils~N~l~~l~~dl~nL~~l~vl~~~~n-----~l~-~lp~aig~l~~l~~l~vs~n~----ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 48 QKLILSHNDLEVLREDLKNLACLTVLNVHDN-----KLS-QLPAAIGELEALKSLNVSHNK----LSELPEQIGSLISLV 117 (565)
T ss_pred hhhhhccCchhhccHhhhcccceeEEEeccc-----hhh-hCCHHHHHHHHHHHhhcccch----HhhccHHHhhhhhhh
Confidence 3445556666556667778888888888887 233 345557888889999999999 889999999999999
Q ss_pred EEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCc
Q 045633 439 YLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSG 507 (794)
Q Consensus 439 ~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~ 507 (794)
.|+.+. ..++|++++.+..|+.++ .+++.++|.++.++.+|..|++.+|.++.+|+..-+|+.|++|+.
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDC 190 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhccc
Confidence 999987 899999999999999998 678899999999999999999999999999887777999998874
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=5.5e-21 Score=205.46 Aligned_cols=368 Identities=21% Similarity=0.251 Sum_probs=214.7
Q ss_pred EEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEec
Q 045633 363 LMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQL 442 (794)
Q Consensus 363 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L 442 (794)
.+.....-+|..+.....+..|++..+ .....+-++..+.-.|++|++++|. +..+|..|..+.+|+.|++
T Consensus 5 ~s~~~l~~ip~~i~~~~~~~~ln~~~N-----~~l~~pl~~~~~~v~L~~l~lsnn~----~~~fp~~it~l~~L~~ln~ 75 (1081)
T KOG0618|consen 5 ASDEQLELIPEQILNNEALQILNLRRN-----SLLSRPLEFVEKRVKLKSLDLSNNQ----ISSFPIQITLLSHLRQLNL 75 (1081)
T ss_pred cccccCcccchhhccHHHHHhhhcccc-----ccccCchHHhhheeeeEEeeccccc----cccCCchhhhHHHHhhccc
Confidence 344444446666666666888888777 2222223334455559999999999 8899999999999999999
Q ss_pred cC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCceEeccccCCCC
Q 045633 443 SS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYS 518 (794)
Q Consensus 443 ~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~ 518 (794)
+. +.++|.++.++++|++|+ |+.+..+|.++..+++|++|+++.|.+..+|.-+..++.+..+.......+.....
T Consensus 76 s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~ 155 (1081)
T KOG0618|consen 76 SRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ 155 (1081)
T ss_pred chhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc
Confidence 98 999999999999999999 99999999999999999999999999999888776666655554322100000000
Q ss_pred ------------CCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCc
Q 045633 519 ------------SKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNE 586 (794)
Q Consensus 519 ------------~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~ 586 (794)
.....+.+...+++ .+++.+.+ .. ...+..+.+|+.+....+......+.. |.....
T Consensus 156 ~~ik~~~l~~n~l~~~~~~~i~~l~~---~ldLr~N~-~~------~~dls~~~~l~~l~c~rn~ls~l~~~g-~~l~~L 224 (1081)
T KOG0618|consen 156 TSIKKLDLRLNVLGGSFLIDIYNLTH---QLDLRYNE-ME------VLDLSNLANLEVLHCERNQLSELEISG-PSLTAL 224 (1081)
T ss_pred ccchhhhhhhhhcccchhcchhhhhe---eeecccch-hh------hhhhhhccchhhhhhhhcccceEEecC-cchhee
Confidence 00001111111111 01111000 00 011222222322222222211000000 000000
Q ss_pred chhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCC----------------------CCc
Q 045633 587 ENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPR----------------------CEI 644 (794)
Q Consensus 587 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~----------------------l~~ 644 (794)
............-..+.+|++++++.+....+ |+|++.+.+|+.|....|.. ++.
T Consensus 225 ~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~l---p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~y 301 (1081)
T KOG0618|consen 225 YADHNPLTTLDVHPVPLNLQYLDISHNNLSNL---PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEY 301 (1081)
T ss_pred eeccCcceeeccccccccceeeecchhhhhcc---hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhh
Confidence 00000000111223345788888888887777 88888888888887776642 233
Q ss_pred CCC-CCCCCCcceeeecccccceEeCcccccCcc--cC------------------------CCcccc-----ccCCCcc
Q 045633 645 MPP-LGKLPSLEILRIAEMVSVKKVGDEFLGIGI--RD------------------------HNHIHG-----TFSSSSV 692 (794)
Q Consensus 645 l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~--l~------------------------~~~l~~-----~~~~~~~ 692 (794)
+|. ++.+.+|+.|+|.. +++..+|+.++.... ++ .+.+.+ .+-+. +
T Consensus 302 ip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l 379 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-L 379 (1081)
T ss_pred CCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-h
Confidence 344 55688888888885 557777664433211 11 111111 11111 4
Q ss_pred ccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCcc
Q 045633 693 VAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 693 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~ 759 (794)
.+|++|+.|+|++ +.|..++. ..+.+++.|++|+++|| +|+.+|+.+..++.|++|...+|..
T Consensus 380 ~~~~hLKVLhLsy-NrL~~fpa--s~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSY-NRLNSFPA--SKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQL 442 (1081)
T ss_pred ccccceeeeeecc-cccccCCH--HHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCce
Confidence 5778888888887 45665552 23447778888888888 7888777666666666666655544
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=1e-16 Score=172.97 Aligned_cols=388 Identities=20% Similarity=0.192 Sum_probs=226.4
Q ss_pred ceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCC
Q 045633 358 LRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHL 437 (794)
Q Consensus 358 ~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L 437 (794)
+.+|.+.++....+|..+....+|+.|+++.+ .....|.....+++|++|.|.+|. +..+|.++..+++|
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n------~i~~vp~s~~~~~~l~~lnL~~n~----l~~lP~~~~~lknl 116 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRN------YIRSVPSSCSNMRNLQYLNLKNNR----LQSLPASISELKNL 116 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchh------hHhhCchhhhhhhcchhheeccch----hhcCchhHHhhhcc
Confidence 78888888988889998888999999999888 333455667889999999999998 88899999999999
Q ss_pred cEEeccC--CCccCccccCCCccceec--Cc-CCCccCcccccccCCceeEecccccc-cCCCCCCCCCCCCccCceEec
Q 045633 438 RYLQLSS--VEELPETCCELLNLQTLD--CL-SLKRLPQGIGKLINLRHLIFDVFGVD-YVPNGFERLTGLRTLSGFTVA 511 (794)
Q Consensus 438 ~~L~L~~--~~~lp~~i~~L~~L~~L~--~~-~l~~lp~~~~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~~~~~~ 511 (794)
+||+++. ...+|.-+..+..++.++ .+ .+..++. +. .+++++..+.+. .++.++..++. .|++....
T Consensus 117 ~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~ 189 (1081)
T KOG0618|consen 117 QYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNE 189 (1081)
T ss_pred cccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcchhhhhe--eeecccch
Confidence 9999998 888887777777777666 22 2222222 11 444444333322 33444444444 23221111
Q ss_pred cccCCCCCCccCcccccccccCCC------eeEEcccc--CCCChhhh--hhccccCCCCCceEEEEecCCCCccccccc
Q 045633 512 RVDGEYSSKACNLEGLGNLNHLRG------FLRICGLG--NVTAADEA--KNAHLEKKKNLVHLILDFTKREDEDYEEAP 581 (794)
Q Consensus 512 ~~~~~~~~~~~~l~~l~~L~~L~~------~l~~~~~~--~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p 581 (794)
. ....+..+.+|+.+.. .+.+++.. .+...... ....-....+|+.++++++.. ..+|
T Consensus 190 ~-------~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l-----~~lp 257 (1081)
T KOG0618|consen 190 M-------EVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL-----SNLP 257 (1081)
T ss_pred h-------hhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhh-----hcch
Confidence 0 0011111111111110 12221110 00000000 000112235788899998874 4788
Q ss_pred cccCc--------chhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC------
Q 045633 582 MWMNE--------ENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP------ 647 (794)
Q Consensus 582 ~~~~~--------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~------ 647 (794)
.|+.. .........+..+....+|+.|.+..|....+ |.....+..|++|+|..|. +.++|.
T Consensus 258 ~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yi---p~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~ 333 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYI---PPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVL 333 (1081)
T ss_pred HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhC---CCcccccceeeeeeehhcc-ccccchHHHhhh
Confidence 88752 11122244555666677888888888877777 8888889999999999883 333332
Q ss_pred -------------------C--CCCCCcceeeecccccceEeCcccccCcccCCCcccc----ccCCCccccCCccceee
Q 045633 648 -------------------L--GKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHG----TFSSSSVVAFPKLEKLD 702 (794)
Q Consensus 648 -------------------l--~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~L~~L~ 702 (794)
. ..++.|+.|.+.++.-.......+.+...++.++++. +++...+.+|+.|+.|.
T Consensus 334 ~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~ 413 (1081)
T KOG0618|consen 334 NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELN 413 (1081)
T ss_pred hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHh
Confidence 0 0133444555544333333333344455556666654 36666677777788887
Q ss_pred cccccccccccc--------------------CCCCccCCCcccEEeeccCccCcCCCcCccCC-CCccEEEeccCcccc
Q 045633 703 LWIMLQLEEWDF--------------------GKEDITIMPQIKSLMIFSCEKLKSLPDQLLRS-TTLESLEIGEAPIVE 761 (794)
Q Consensus 703 l~~~~~l~~~~~--------------------~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l-~~L~~L~l~~~~~l~ 761 (794)
|+| ++|+.++. .| .+..+|.|+.+|++.| +|+.+.-...-+ +.|++|+++||+.+.
T Consensus 414 LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 414 LSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred ccc-chhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcccc
Confidence 777 33433321 12 2457888999999877 676643222223 899999999998621
Q ss_pred ccccccCCCCCccccccceeeeccc
Q 045633 762 QNFKKDTGKDWSKISHIPNILISGR 786 (794)
Q Consensus 762 ~~~~~~~~~~~~~~~~i~~~~~~~~ 786 (794)
+ ..+.....+++....+.-+
T Consensus 491 --~---d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 491 --F---DHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred --c---chhhhHHhhhhhheecccC
Confidence 1 1233445555555555433
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=1.7e-13 Score=153.32 Aligned_cols=252 Identities=19% Similarity=0.212 Sum_probs=142.3
Q ss_pred ccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEe
Q 045633 409 CLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIF 484 (794)
Q Consensus 409 ~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l 484 (794)
.-.+|+++++. +..+|+.+. .+|+.|++++ ++.+|.. +.+|++|+ +++++.+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~----LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESG----LTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCC----CCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeec
Confidence 34566666666 556666554 2566666665 6666643 34556665 4556666542 345666666
Q ss_pred cccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccc-cccCCCeeEEccccCCCChhhhhhccccCCCCCc
Q 045633 485 DVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGN-LNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLV 563 (794)
Q Consensus 485 ~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 563 (794)
+.|.+..+|... ++|+.|++..+ .+..++. +++|+ .|++... .+.... . ...+|+
T Consensus 270 s~N~L~~Lp~lp---~~L~~L~Ls~N------------~Lt~LP~~p~~L~-~LdLS~N-~L~~Lp----~---lp~~L~ 325 (788)
T PRK15387 270 FSNPLTHLPALP---SGLCKLWIFGN------------QLTSLPVLPPGLQ-ELSVSDN-QLASLP----A---LPSELC 325 (788)
T ss_pred cCCchhhhhhch---hhcCEEECcCC------------ccccccccccccc-eeECCCC-ccccCC----C---Cccccc
Confidence 666666655422 23333332111 1111110 11122 2222111 000000 0 112455
Q ss_pred eEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCC
Q 045633 564 HLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCE 643 (794)
Q Consensus 564 ~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~ 643 (794)
.|.+++|.+. .+|. .+.+|+.|++++|....+ |.. .++|+.|++++| .+.
T Consensus 326 ~L~Ls~N~L~-----~LP~------------------lp~~Lq~LdLS~N~Ls~L---P~l---p~~L~~L~Ls~N-~L~ 375 (788)
T PRK15387 326 KLWAYNNQLT-----SLPT------------------LPSGLQELSVSDNQLASL---PTL---PSELYKLWAYNN-RLT 375 (788)
T ss_pred ccccccCccc-----cccc------------------cccccceEecCCCccCCC---CCC---Ccccceehhhcc-ccc
Confidence 5666665532 1110 124688888888777665 543 356777788777 345
Q ss_pred cCCCCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCC
Q 045633 644 IMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMP 723 (794)
Q Consensus 644 ~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~ 723 (794)
.+|.+ +++|+.|+++++ .++.+|. ..++|+.|+++++ ++..++. ...
T Consensus 376 ~LP~l--~~~L~~LdLs~N-~Lt~LP~-----------------------l~s~L~~LdLS~N-~LssIP~------l~~ 422 (788)
T PRK15387 376 SLPAL--PSGLKELIVSGN-RLTSLPV-----------------------LPSELKELMVSGN-RLTSLPM------LPS 422 (788)
T ss_pred cCccc--ccccceEEecCC-cccCCCC-----------------------cccCCCEEEccCC-cCCCCCc------chh
Confidence 56653 357888888764 3444432 2357889999884 5665542 235
Q ss_pred cccEEeeccCccCcCCCcCccCCCCccEEEeccCccc
Q 045633 724 QIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPIV 760 (794)
Q Consensus 724 ~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~l 760 (794)
+|+.|++++| .++.+|..+..+++|+.|++++|+.-
T Consensus 423 ~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 423 GLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhhccC-cccccChHHhhccCCCeEECCCCCCC
Confidence 7889999998 78899998889999999999999863
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.43 E-value=1.5e-11 Score=148.45 Aligned_cols=287 Identities=16% Similarity=0.209 Sum_probs=176.1
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC-CCHHHHHHHHHHHhcCCCC
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGSLP 81 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~ 81 (794)
|.++.+.|... ...+++.|+|++|.||||++..+.++ +..++|+++... .+.......++..+.....
T Consensus 19 R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~ 87 (903)
T PRK04841 19 RERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATN 87 (903)
T ss_pred chHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcC
Confidence 67788877643 36789999999999999999988752 225899998643 4555666777776642211
Q ss_pred C-------------CCCHHHHHHHHHhHcC--CceEEEEEeCCCCCCccChhhhHhh-ccCCCCCcEEEEEccchhhh--
Q 045633 82 N-------------LGELNSLLEYIHTSIK--GKKFFLILDDVWTDDHSKWEPFHNC-LMNGLCGSRILVTTRKETVA-- 143 (794)
Q Consensus 82 ~-------------~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~~l~~~-l~~~~~gs~iivTtr~~~v~-- 143 (794)
. ..........+...+. +++++|||||+...+......+... +....++.++|||||...-.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~ 167 (903)
T PRK04841 88 GHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGI 167 (903)
T ss_pred cccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCch
Confidence 1 0122233333333332 6799999999965443333333333 33334567898999974211
Q ss_pred -hcccccceEEcc----CCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCCC-HHHHH
Q 045633 144 -RMMESTDVISIK----ELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKT-REEWQ 217 (794)
Q Consensus 144 -~~~~~~~~~~l~----~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~-~~~w~ 217 (794)
.........++. +|+.+|+.++|........ -.+.+.+|.+.++|.|+++..++..++.... ....
T Consensus 168 ~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~- 239 (903)
T PRK04841 168 ANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSARQNNSSLHDS- 239 (903)
T ss_pred HhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhh-
Confidence 111112345566 9999999999987543221 1344678999999999999999887753321 1110
Q ss_pred HHHhhhhcccch-hcccchhHHHh-hhcCCChHHHhhhhhcccCCCCcccChhHHHHHHHHcCCccccCCcchhhhhhHH
Q 045633 218 LILNSEMWQLED-FEKNLLAPLQL-SYNDLPPEIKRCFLYCVVFPKDYDLDKGELVRLWMAQGYIEKKGNIEMEMTGGWY 295 (794)
Q Consensus 218 ~~l~~~~~~~~~-~~~~~~~~l~~-sy~~L~~~~k~~fl~la~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~ 295 (794)
.. .... ....+...+.- -++.||++.++.++..|+++ . ++.. +... +.. .+.+...
T Consensus 240 --~~----~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~--~~~~-l~~~-----l~~-------~~~~~~~ 297 (903)
T PRK04841 240 --AR----RLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-S--MNDA-LIVR-----VTG-------EENGQMR 297 (903)
T ss_pred --hH----hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-c--CCHH-HHHH-----HcC-------CCcHHHH
Confidence 00 0111 11234444433 37899999999999999986 2 3322 2111 111 1223567
Q ss_pred HHHHHhccCcccccCCCCCeEEEEeehHHHHHHHHhc
Q 045633 296 FDFLASRSFFQDFDEDEEGIVTCKMHDIVHDFAQYLT 332 (794)
Q Consensus 296 l~~L~~~sll~~~~~~~~~~~~~~~h~li~~~~~~~~ 332 (794)
++.|.+.+++....+..+ ..|+.|++++++.+...
T Consensus 298 L~~l~~~~l~~~~~~~~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 298 LEELERQGLFIQRMDDSG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHCCCeeEeecCCC--CEEehhHHHHHHHHHHH
Confidence 899999998654322211 24788999999987654
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=1.6e-12 Score=145.61 Aligned_cols=255 Identities=18% Similarity=0.102 Sum_probs=151.0
Q ss_pred eEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCc
Q 045633 359 RHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLR 438 (794)
Q Consensus 359 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~ 438 (794)
..|.+..+....+|..+. ++++.|.+.+|. +. .+|. .+++|++|++++|+ +..+|.. ..+|+
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~-----Lt-~LP~---lp~~Lk~LdLs~N~----LtsLP~l---p~sL~ 265 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNN-----LT-SLPA---LPPELRTLEVSGNQ----LTSLPVL---PPGLL 265 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCc-----CC-CCCC---CCCCCcEEEecCCc----cCcccCc---ccccc
Confidence 345555566666666554 478888887762 21 1232 35678888888888 6667653 35788
Q ss_pred EEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCceEecccc
Q 045633 439 YLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTVARVD 514 (794)
Q Consensus 439 ~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~ 514 (794)
.|++++ +..+|... .+|+.|+ .++++.+|.. +++|+.|+++.|.+..+|.... +|+.|.+..
T Consensus 266 ~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~---~L~~L~Ls~----- 331 (788)
T PRK15387 266 ELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPS---ELCKLWAYN----- 331 (788)
T ss_pred eeeccCCchhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcc---ccccccccc-----
Confidence 888887 77777644 3455555 4567777763 4678888888888888775333 344443111
Q ss_pred CCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHH
Q 045633 515 GEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEA 594 (794)
Q Consensus 515 ~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~ 594 (794)
+.+..++. ...+|+.|++++|.+.. +|.
T Consensus 332 -------N~L~~LP~----------------------------lp~~Lq~LdLS~N~Ls~-----LP~------------ 359 (788)
T PRK15387 332 -------NQLTSLPT----------------------------LPSGLQELSVSDNQLAS-----LPT------------ 359 (788)
T ss_pred -------Cccccccc----------------------------cccccceEecCCCccCC-----CCC------------
Confidence 01111110 01357777887776441 111
Q ss_pred HhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCccccc
Q 045633 595 ICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLG 674 (794)
Q Consensus 595 ~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~ 674 (794)
.+++|+.|++++|....+ |.. ..+|+.|++++| .+..+|.. .++|+.|+++++. ++.+|.
T Consensus 360 ------lp~~L~~L~Ls~N~L~~L---P~l---~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~---- 419 (788)
T PRK15387 360 ------LPSELYKLWAYNNRLTSL---PAL---PSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM---- 419 (788)
T ss_pred ------CCcccceehhhccccccC---ccc---ccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc----
Confidence 124677777777776655 543 356788888877 34556643 3578888888643 444442
Q ss_pred CcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCC
Q 045633 675 IGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLP 740 (794)
Q Consensus 675 ~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip 740 (794)
.+.+|+.|++++ +++..++ ..+..+++|+.|++++|+--..+|
T Consensus 420 -------------------l~~~L~~L~Ls~-NqLt~LP---~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 420 -------------------LPSGLLSLSVYR-NQLTRLP---ESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred -------------------chhhhhhhhhcc-CcccccC---hHHhhccCCCeEECCCCCCCchHH
Confidence 123566677766 4455443 334567788888888885433333
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=6.8e-13 Score=149.72 Aligned_cols=86 Identities=20% Similarity=0.346 Sum_probs=45.4
Q ss_pred ccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEe
Q 045633 409 CLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIF 484 (794)
Q Consensus 409 ~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l 484 (794)
+...|+++++. +..+|..+. .+|+.|+|++ +..+|..+. .+|++|+ .++++.+|..+. .+|+.|++
T Consensus 179 ~~~~L~L~~~~----LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILG----LTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCC----cCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEEC
Confidence 34556666555 445555442 3566666665 556665443 3555555 344555555432 35666666
Q ss_pred cccccccCCCCCCCCCCCCccC
Q 045633 485 DVFGVDYVPNGFERLTGLRTLS 506 (794)
Q Consensus 485 ~~~~l~~lp~~i~~l~~L~~L~ 506 (794)
++|.+..+|..+. ++|+.|+
T Consensus 249 s~N~L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 249 SINRITELPERLP--SALQSLD 268 (754)
T ss_pred cCCccCcCChhHh--CCCCEEE
Confidence 6666666655442 2444443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=2.8e-12 Score=144.85 Aligned_cols=222 Identities=21% Similarity=0.256 Sum_probs=128.6
Q ss_pred ceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCC
Q 045633 358 LRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHL 437 (794)
Q Consensus 358 ~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L 437 (794)
...+.+.......+|..+. ++++.|++++|. +.. +|..+ +.+|+.|++++|. +..+|..+. .+|
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-----Lts-LP~~l--~~nL~~L~Ls~N~----LtsLP~~l~--~~L 243 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNE-----LKS-LPENL--QGNIKTLYANSNQ----LTSIPATLP--DTI 243 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCC-----CCc-CChhh--ccCCCEEECCCCc----cccCChhhh--ccc
Confidence 4456666555555665442 567888887772 222 23222 2478888888887 666776543 368
Q ss_pred cEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCceEeccc
Q 045633 438 RYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTVARV 513 (794)
Q Consensus 438 ~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 513 (794)
+.|+|++ +..+|..+. .+|+.|+ |+++..+|..+. .+|++|++++|++..+|..+. ++|+.|++..+
T Consensus 244 ~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N--- 314 (754)
T PRK15370 244 QEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN--- 314 (754)
T ss_pred cEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC---
Confidence 8888887 777777654 4677777 667777776553 478888887777777765443 24444442110
Q ss_pred cCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHH
Q 045633 514 DGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQE 593 (794)
Q Consensus 514 ~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~ 593 (794)
.+.. +. . ...++|+.|++++|... .+|
T Consensus 315 ---------~Lt~------LP-------------------~--~l~~sL~~L~Ls~N~Lt-----~LP------------ 341 (754)
T PRK15370 315 ---------SLTA------LP-------------------E--TLPPGLKTLEAGENALT-----SLP------------ 341 (754)
T ss_pred ---------cccc------CC-------------------c--cccccceeccccCCccc-----cCC------------
Confidence 0000 00 0 01135666777666533 122
Q ss_pred HHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeecccccceEeCcc
Q 045633 594 AICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMVSVKKVGDE 671 (794)
Q Consensus 594 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~ 671 (794)
..+ +++|+.|++++|....+ |..+ .++|+.|+|++|. +..+|. +. ++|+.|++++ +.+..+|..
T Consensus 342 ---~~l--~~sL~~L~Ls~N~L~~L---P~~l--p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~s 406 (754)
T PRK15370 342 ---ASL--PPELQVLDVSKNQITVL---PETL--PPTITTLDVSRNA-LTNLPENLP--AALQIMQASR-NNLVRLPES 406 (754)
T ss_pred ---hhh--cCcccEEECCCCCCCcC---Chhh--cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhcc-CCcccCchh
Confidence 111 25777788877776554 5544 2577788887773 445554 22 3677777776 345555554
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.25 E-value=1.9e-13 Score=118.41 Aligned_cols=139 Identities=28% Similarity=0.287 Sum_probs=114.0
Q ss_pred ccCcceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccC
Q 045633 354 CQEKLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLEN 433 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~ 433 (794)
...++..+.++++.+.++|.++..+++||.|++.-+ -...+|.-|+.++.|++|||.+|+++ -..+|..|..
T Consensus 54 ~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn------rl~~lprgfgs~p~levldltynnl~--e~~lpgnff~ 125 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN------RLNILPRGFGSFPALEVLDLTYNNLN--ENSLPGNFFY 125 (264)
T ss_pred HhhhhhhhhcccchhhhcChhhhhchhhhheecchh------hhhcCccccCCCchhhhhhccccccc--cccCCcchhH
Confidence 345677778888888889999999999999988655 23346666899999999999998842 2357888888
Q ss_pred ccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCC
Q 045633 434 LIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLT 500 (794)
Q Consensus 434 l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~ 500 (794)
+..|+-|+|++ .+.+|..+++|++||.|. .+.+-++|..++.|++|+.|++.+|+++.+|..++++.
T Consensus 126 m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l~ 196 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANLD 196 (264)
T ss_pred HHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhhh
Confidence 89999999987 888999999999999988 56788899999999999999999999999988777653
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.23 E-value=4.7e-13 Score=131.47 Aligned_cols=129 Identities=22% Similarity=0.239 Sum_probs=95.6
Q ss_pred ccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccCccCCcEEeccC-
Q 045633 367 LRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLIHLRYLQLSS- 444 (794)
Q Consensus 367 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~- 444 (794)
...++|..+. +.-..+.+..| .+...++++|+.+++||+|||++|. |+.+ |+.|..+..|-.|-+-+
T Consensus 57 GL~eVP~~LP--~~tveirLdqN-----~I~~iP~~aF~~l~~LRrLdLS~N~----Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 57 GLTEVPANLP--PETVEIRLDQN-----QISSIPPGAFKTLHRLRRLDLSKNN----ISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred CcccCcccCC--CcceEEEeccC-----CcccCChhhccchhhhceecccccc----hhhcChHhhhhhHhhhHHHhhcC
Confidence 3344555443 34555666555 4556677889999999999999998 6666 78888888887765544
Q ss_pred --CCccCcc-ccCCCccceec--CcCCCccCc-ccccccCCceeEecccccccCCC-CCCCCCCCCccC
Q 045633 445 --VEELPET-CCELLNLQTLD--CLSLKRLPQ-GIGKLINLRHLIFDVFGVDYVPN-GFERLTGLRTLS 506 (794)
Q Consensus 445 --~~~lp~~-i~~L~~L~~L~--~~~l~~lp~-~~~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~ 506 (794)
|+++|+. |++|..|+.|. -.++..++. .+..|++|..|.+..|.+..++. .+..+.+++++.
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 8889875 88999998887 334555544 47888999999998888888886 578888888876
No 22
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.22 E-value=1.3e-09 Score=118.61 Aligned_cols=292 Identities=20% Similarity=0.247 Sum_probs=188.1
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC-CCCHHHHHHHHHHHhcCCCC
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLP 81 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~~~ 81 (794)
|.++...|... .+.|.+.|.-|+|.||||++.+... +.. .=..|.|+++++ ..+.....+.++..+....+
T Consensus 24 R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p 95 (894)
T COG2909 24 RPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATP 95 (894)
T ss_pred cHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCc
Confidence 56777777654 3789999999999999999988864 222 224589999876 45667788888887764333
Q ss_pred CC-------------CCHHHHHHHHHhHcC--CceEEEEEeCCCCCCccChhh-hHhhccCCCCCcEEEEEccchh---h
Q 045633 82 NL-------------GELNSLLEYIHTSIK--GKKFFLILDDVWTDDHSKWEP-FHNCLMNGLCGSRILVTTRKET---V 142 (794)
Q Consensus 82 ~~-------------~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~~-l~~~l~~~~~gs~iivTtr~~~---v 142 (794)
+. .+...+...+...+. .++.++||||..-........ +...+....++-.+|||||.+. +
T Consensus 96 ~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~l 175 (894)
T COG2909 96 TLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGL 175 (894)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcc
Confidence 22 233344455544442 568999999985543333333 4444445566889999999864 2
Q ss_pred hhcccccceEEcc----CCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCCCHHHHHH
Q 045633 143 ARMMESTDVISIK----ELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWQL 218 (794)
Q Consensus 143 ~~~~~~~~~~~l~----~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~ 218 (794)
++..-.+..+++. .|+.+|+.++|.......-+ ..-++.+.+..+|.+-|+..++-.++...+.+.-..
T Consensus 176 a~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld-------~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 176 ARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD-------AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred cceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC-------hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 2221123334444 58999999999876422111 334677999999999999999988874555544443
Q ss_pred HHhhhhcccchhcccchhHH-HhhhcCCChHHHhhhhhcccCCCCcccChhHHHHHHHHcCCccccCCcchhhhhhHHHH
Q 045633 219 ILNSEMWQLEDFEKNLLAPL-QLSYNDLPPEIKRCFLYCVVFPKDYDLDKGELVRLWMAQGYIEKKGNIEMEMTGGWYFD 297 (794)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~k~~fl~la~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~l~ 297 (794)
.+..... .+.+.| .--++.||++.+..++-+|+++.- . +.|+... +-++.+..+++
T Consensus 249 ~LsG~~~-------~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L------------tg~~ng~amLe 305 (894)
T COG2909 249 GLSGAAS-------HLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL------------TGEENGQAMLE 305 (894)
T ss_pred hccchHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH------------hcCCcHHHHHH
Confidence 3332211 122211 223578999999999999987431 1 1222211 12445677899
Q ss_pred HHHhccCcccccCCCCCeEEEEeehHHHHHHHHhccc
Q 045633 298 FLASRSFFQDFDEDEEGIVTCKMHDIVHDFAQYLTRK 334 (794)
Q Consensus 298 ~L~~~sll~~~~~~~~~~~~~~~h~li~~~~~~~~~~ 334 (794)
+|.++++.-..-++. ...|+.|.++.+|.+.-...
T Consensus 306 ~L~~~gLFl~~Ldd~--~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 306 ELERRGLFLQRLDDE--GQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHhCCCceeeecCC--CceeehhHHHHHHHHhhhcc
Confidence 999999876543322 23689999999998765543
No 23
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=8.9e-10 Score=112.25 Aligned_cols=183 Identities=15% Similarity=0.102 Sum_probs=114.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH----h
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIH----T 95 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~----~ 95 (794)
+.+++.|+|++|+||||+++.+++.... ..+ .++|+ .....+..+++..++..++..... .+.......+. .
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHH
Confidence 3568899999999999999999884221 111 12233 233456778888898888665432 22222233332 2
Q ss_pred H-cCCceEEEEEeCCCCCCccChhhhHhhccC---CCCCcEEEEEccchhhhhcc----------cccceEEccCCChHh
Q 045633 96 S-IKGKKFFLILDDVWTDDHSKWEPFHNCLMN---GLCGSRILVTTRKETVARMM----------ESTDVISIKELSEHE 161 (794)
Q Consensus 96 ~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~---~~~gs~iivTtr~~~v~~~~----------~~~~~~~l~~l~~~e 161 (794)
. ..+++.++|+||++......++.+...... ......|++|..... ...+ .....+++++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~-~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEF-RETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHH-HHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 267889999999977655555555432111 122234566665432 1111 113467899999999
Q ss_pred HHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhh
Q 045633 162 CWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLL 207 (794)
Q Consensus 162 a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 207 (794)
..+++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987765433211112235678889999999999999888766
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.18 E-value=5.8e-09 Score=112.63 Aligned_cols=304 Identities=14% Similarity=0.087 Sum_probs=170.6
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCC-C
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-L 80 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~-~ 80 (794)
|.++|...+.... .....+.+.|+|++|+|||++++.++++.......-.+++|++....+...++..++.++... .
T Consensus 38 e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~ 115 (394)
T PRK00411 38 QIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPP 115 (394)
T ss_pred HHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCC
Confidence 4455666653321 122445678999999999999999998422222123467788877778888999999998752 2
Q ss_pred C-CCCCHHHHHHHHHhHcC--CceEEEEEeCCCCCC----ccChhhhHhhccCCCCCcE--EEEEccchhhhhcc-----
Q 045633 81 P-NLGELNSLLEYIHTSIK--GKKFFLILDDVWTDD----HSKWEPFHNCLMNGLCGSR--ILVTTRKETVARMM----- 146 (794)
Q Consensus 81 ~-~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~----~~~~~~l~~~l~~~~~gs~--iivTtr~~~v~~~~----- 146 (794)
+ .....++....+.+.+. ++..+||+|+++... ...+..+...+.. .++++ +|.++.+..+....
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~ 194 (394)
T PRK00411 116 PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVK 194 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHH
Confidence 2 22345566666666664 457899999996532 1223333332222 22333 56666654332211
Q ss_pred --cccceEEccCCChHhHHHHHHHHhhCCC--CCCChhHHHHHHHHHHhhcCCCchHHHHHHhhh----cCC---CCHHH
Q 045633 147 --ESTDVISIKELSEHECWSLFKRFAFSGR--SPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLL----RFK---KTREE 215 (794)
Q Consensus 147 --~~~~~~~l~~l~~~ea~~Lf~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l----~~~---~~~~~ 215 (794)
-....+.+++++.++..+++..++.... .......++.+++......|..+.|+.++-.+. ... -+.+.
T Consensus 195 s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~ 274 (394)
T PRK00411 195 SVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEED 274 (394)
T ss_pred hcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 1134678999999999999987764321 112233334444444344566777877664322 111 14455
Q ss_pred HHHHHhhhhcccchhcccchhHHHhhhcCCChHHHhhhhhcccCCC--CcccChhHHHH--HHHHcCCccccCCcchhhh
Q 045633 216 WQLILNSEMWQLEDFEKNLLAPLQLSYNDLPPEIKRCFLYCVVFPK--DYDLDKGELVR--LWMAQGYIEKKGNIEMEMT 291 (794)
Q Consensus 216 w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~fp~--~~~i~~~~li~--~w~~~g~~~~~~~~~~~~~ 291 (794)
...+.+.. -.....-.+..||.+.|..+.-++...+ ...+....+.. ..+++.+-.. .. ....
T Consensus 275 v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~--~~-~~~~ 341 (394)
T PRK00411 275 VRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE--PR-THTR 341 (394)
T ss_pred HHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC--cC-cHHH
Confidence 55554432 1233445678999988876665543221 12344444442 2333222110 01 1233
Q ss_pred hhHHHHHHHhccCcccccCCC---CCeEEEEee
Q 045633 292 GGWYFDFLASRSFFQDFDEDE---EGIVTCKMH 321 (794)
Q Consensus 292 ~~~~l~~L~~~sll~~~~~~~---~~~~~~~~h 321 (794)
...++..|...+++.....+. +..+.++++
T Consensus 342 ~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 342 FYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 456899999999998654322 444444443
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.17 E-value=1.1e-11 Score=142.24 Aligned_cols=322 Identities=24% Similarity=0.278 Sum_probs=209.9
Q ss_pred cCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC-ccccCccCCcEEeccC---CCccCcc
Q 045633 376 FDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-RGLENLIHLRYLQLSS---VEELPET 451 (794)
Q Consensus 376 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~---~~~lp~~ 451 (794)
.+....|.+.+.++.. .. .+. -...+.|+.|-+.++.. .+..++ ..|..++.|++|||++ +.+||.+
T Consensus 520 ~~~~~~rr~s~~~~~~-----~~-~~~-~~~~~~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKI-----EH-IAG-SSENPKLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred cchhheeEEEEeccch-----hh-ccC-CCCCCccceEEEeecch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 3456677777766621 11 122 12444799999998851 033444 3477899999999996 8999999
Q ss_pred ccCCCccceec--CcCCCccCcccccccCCceeEecccc-cccCCCCCCCCCCCCccCceEeccccCCCCCCccCccccc
Q 045633 452 CCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFG-VDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLG 528 (794)
Q Consensus 452 i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 528 (794)
|++|.+|++|+ ++.+..+|.++++|++|.+|++..+. +..+|.....|++|++|.++.... ......+.++.
T Consensus 591 I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~-----~~~~~~l~el~ 665 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL-----SNDKLLLKELE 665 (889)
T ss_pred HhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc-----ccchhhHHhhh
Confidence 99999999999 88999999999999999999996544 444455566699999998765441 14455667777
Q ss_pred ccccCCCeeEEccccCCCChhhhhhccccCCCCCce----EEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCC
Q 045633 529 NLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVH----LILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPN 604 (794)
Q Consensus 529 ~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~----L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~ 604 (794)
+|++|+ .+++..... .....+...+.|.+ +.+.++. .......+..+.+
T Consensus 666 ~Le~L~-~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~~--------------------~~~~~~~~~~l~~ 718 (889)
T KOG4658|consen 666 NLEHLE-NLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGCS--------------------KRTLISSLGSLGN 718 (889)
T ss_pred cccchh-hheeecchh------HhHhhhhhhHHHHHHhHhhhhcccc--------------------cceeecccccccC
Confidence 777777 565532211 01111222223322 2222111 1233456778899
Q ss_pred ccEEEEeecCCCccCCCCchhc-----c-ccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccccCccc
Q 045633 605 IESLNITGFEGRRLIFSSNWTA-----S-LDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIR 678 (794)
Q Consensus 605 L~~L~l~~~~~~~~~~~p~~~~-----~-l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l 678 (794)
|+.|.+.+|...... ..|.. . ++++..+.+.+|+....+.+.-..|+|+.|.+..|..++.+.........+
T Consensus 719 L~~L~i~~~~~~e~~--~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l 796 (889)
T KOG4658|consen 719 LEELSILDCGISEIV--IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL 796 (889)
T ss_pred cceEEEEcCCCchhh--cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhc
Confidence 999999999886431 12211 2 668888888899888777776667999999999998887765433222211
Q ss_pred CCCccccccCCCccccCCcccee-eccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccC
Q 045633 679 DHNHIHGTFSSSSVVAFPKLEKL-DLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEA 757 (794)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~ 757 (794)
.. .+..|+++..+ .+.+.+.+..+...+- .+++|+.+.+..||++..+| .+.++.+.+|
T Consensus 797 ~~----------~i~~f~~~~~l~~~~~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 797 KE----------LILPFNKLEGLRMLCSLGGLPQLYWLPL---SFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred cc----------EEecccccccceeeecCCCCceeEeccc---CccchhheehhcCcccccCc-------cccccceecc
Confidence 11 13345555555 3555555555544443 56679999999999887666 4556666676
Q ss_pred -ccc
Q 045633 758 -PIV 760 (794)
Q Consensus 758 -~~l 760 (794)
+.+
T Consensus 857 ~~~~ 860 (889)
T KOG4658|consen 857 EEKL 860 (889)
T ss_pred ccce
Confidence 443
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.13 E-value=1.8e-12 Score=112.41 Aligned_cols=124 Identities=23% Similarity=0.326 Sum_probs=88.4
Q ss_pred cccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCcc
Q 045633 374 SIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPET 451 (794)
Q Consensus 374 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~ 451 (794)
.+.++++...|.++++ ......|. +..+.+|++|++++|+ ++++|.+|+.+++|+.|+++- +..+|..
T Consensus 28 gLf~~s~ITrLtLSHN-----Kl~~vppn-ia~l~nlevln~~nnq----ie~lp~~issl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHN-----KLTVVPPN-IAELKNLEVLNLSNNQ----IEELPTSISSLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred cccchhhhhhhhcccC-----ceeecCCc-HHHhhhhhhhhcccch----hhhcChhhhhchhhhheecchhhhhcCccc
Confidence 4456666777777766 22222333 5677778888888777 777887788888888887775 7777888
Q ss_pred ccCCCccceec--CcCC--CccCcccccccCCceeEecccccccCCCCCCCCCCCCccCc
Q 045633 452 CCELLNLQTLD--CLSL--KRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSG 507 (794)
Q Consensus 452 i~~L~~L~~L~--~~~l--~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~ 507 (794)
|+.+..|++|| ++++ ..+|..|-.|..|+-|+++.|.++.+|..+++|++||.|.+
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~l 157 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSL 157 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEee
Confidence 88888888887 4444 35677777777777777777777777777787777777764
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.12 E-value=6.5e-12 Score=123.57 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=104.7
Q ss_pred CcccccccCcceEEEEEecccccCcc-cccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcc-cCCCcccc
Q 045633 348 LSLTSTCQEKLRHLTLMLGLRAKFPV-SIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIED-FGLGDKTI 425 (794)
Q Consensus 348 ~~~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~ 425 (794)
..++...+.....+.+..+.+..+|+ ++..+++||.|++++| .+..+-|++|.++..|..|-+.+ |. |.
T Consensus 59 ~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-----~Is~I~p~AF~GL~~l~~Lvlyg~Nk----I~ 129 (498)
T KOG4237|consen 59 TEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-----NISFIAPDAFKGLASLLSLVLYGNNK----IT 129 (498)
T ss_pred ccCcccCCCcceEEEeccCCcccCChhhccchhhhceeccccc-----chhhcChHhhhhhHhhhHHHhhcCCc----hh
Confidence 34456678888999999999988776 4678999999999998 56667788999999998888777 66 88
Q ss_pred ccCcc-ccCccCCcEEeccC--CCccCc-cccCCCccceec--CcCCCccCc-ccccccCCceeEecccc
Q 045633 426 EIPRG-LENLIHLRYLQLSS--VEELPE-TCCELLNLQTLD--CLSLKRLPQ-GIGKLINLRHLIFDVFG 488 (794)
Q Consensus 426 ~lp~~-i~~l~~L~~L~L~~--~~~lp~-~i~~L~~L~~L~--~~~l~~lp~-~~~~L~~L~~L~l~~~~ 488 (794)
.+|.. |+.|..|+.|.+.- +..++. .+..|.+|..|. -+.+..++. .+..+..++++++.-|.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 99864 88999999998876 666664 477788877776 456777777 58889999999884443
No 28
>PF05729 NACHT: NACHT domain
Probab=99.12 E-value=4.5e-10 Score=105.29 Aligned_cols=144 Identities=19% Similarity=0.314 Sum_probs=87.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCcccccc----CCeEEEEEecCCCCHH---HHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIEN----FDKRIWVCVSDPFDEF---RIAKAIIEGLEGSLPNLGELNSLLEYIH 94 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~~v~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 94 (794)
|++.|+|.+|+||||+++.++.+...... +..++|+..+...... .+...+..+..... .........+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHHH
Confidence 57899999999999999998874222222 3456677765533322 33344433332221 11111111111
Q ss_pred hHcCCceEEEEEeCCCCCCcc-------ChhhhH-hhccC-CCCCcEEEEEccchhh---hhcccccceEEccCCChHhH
Q 045633 95 TSIKGKKFFLILDDVWTDDHS-------KWEPFH-NCLMN-GLCGSRILVTTRKETV---ARMMESTDVISIKELSEHEC 162 (794)
Q Consensus 95 ~~l~~~~~LlvlDdv~~~~~~-------~~~~l~-~~l~~-~~~gs~iivTtr~~~v---~~~~~~~~~~~l~~l~~~ea 162 (794)
-+.++++||+|++++.... .+..+. ..+.. ..+++++|||+|.... .........+++.+|++++.
T Consensus 78 --~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 78 --EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred --HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2578999999999653221 122222 22322 2568999999998765 33344456899999999999
Q ss_pred HHHHHHHh
Q 045633 163 WSLFKRFA 170 (794)
Q Consensus 163 ~~Lf~~~~ 170 (794)
.++++++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998754
No 29
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.05 E-value=7.1e-08 Score=103.08 Aligned_cols=293 Identities=10% Similarity=0.075 Sum_probs=161.1
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccC------CeEEEEEecCCCCHHHHHHHHHHH
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF------DKRIWVCVSDPFDEFRIAKAIIEG 75 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f------~~~~~v~~~~~~~~~~~~~~i~~~ 75 (794)
|.++|...+..... ....+.+.|+|++|+|||+++++++++ ..... -.++|+++....+...++..++.+
T Consensus 23 e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 98 (365)
T TIGR02928 23 QIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQ 98 (365)
T ss_pred HHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHH
Confidence 56667777653211 124457889999999999999999874 22111 146788888777888899999998
Q ss_pred hc---CCCC-CCCCHHHHHHHHHhHc--CCceEEEEEeCCCCCC---ccChhhhHhhc-cCCC--CCcEEEEEccchhhh
Q 045633 76 LE---GSLP-NLGELNSLLEYIHTSI--KGKKFFLILDDVWTDD---HSKWEPFHNCL-MNGL--CGSRILVTTRKETVA 143 (794)
Q Consensus 76 l~---~~~~-~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~iivTtr~~~v~ 143 (794)
+. ...+ ...+..+....+.+.+ .+++++||||+++.-. ...+..+.... .... ....+|.+++.....
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~ 178 (365)
T TIGR02928 99 LRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFR 178 (365)
T ss_pred HhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchH
Confidence 84 2221 1123344455555555 3568999999996542 11122222221 1111 223455555443321
Q ss_pred hcc-----c--ccceEEccCCChHhHHHHHHHHhhCC-CCCCChhHHHHHHHHHHhhcCCCch-HHHHHHhhh----cCC
Q 045633 144 RMM-----E--STDVISIKELSEHECWSLFKRFAFSG-RSPTDCEQLEEIGRKIVGKCKGLPL-AAKTIGSLL----RFK 210 (794)
Q Consensus 144 ~~~-----~--~~~~~~l~~l~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~l----~~~ 210 (794)
..+ . ....+.+++.+.++..+++..++... ......++..+.+..++....|.|. |+.++-.+. ..+
T Consensus 179 ~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~ 258 (365)
T TIGR02928 179 ENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREG 258 (365)
T ss_pred hhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 111 0 12468899999999999998876421 1111223334455567777778874 333332211 111
Q ss_pred ---CCHHHHHHHHhhhhcccchhcccchhHHHhhhcCCChHHHhhhhhcccCC--CCcccChhHHHHHH--HHcCCcccc
Q 045633 211 ---KTREEWQLILNSEMWQLEDFEKNLLAPLQLSYNDLPPEIKRCFLYCVVFP--KDYDLDKGELVRLW--MAQGYIEKK 283 (794)
Q Consensus 211 ---~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~fp--~~~~i~~~~li~~w--~~~g~~~~~ 283 (794)
-+.+..+.+.+.. -.....-++..||.+.+..+..++..- ++..+....+...+ +++.+..
T Consensus 259 ~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~-- 326 (365)
T TIGR02928 259 AERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGV-- 326 (365)
T ss_pred CCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCC--
Confidence 1344444433322 122334466788888886665554221 33345555554422 2222110
Q ss_pred CCcchhhhhhHHHHHHHhccCcccccCC
Q 045633 284 GNIEMEMTGGWYFDFLASRSFFQDFDED 311 (794)
Q Consensus 284 ~~~~~~~~~~~~l~~L~~~sll~~~~~~ 311 (794)
....+.....++..|...+++.....+
T Consensus 327 -~~~~~~~~~~~l~~l~~~gli~~~~~~ 353 (365)
T TIGR02928 327 -DPLTQRRISDLLNELDMLGLVEAEERN 353 (365)
T ss_pred -CCCcHHHHHHHHHHHHhcCCeEEEEEc
Confidence 112245566678999999999876543
No 30
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.95 E-value=1.7e-08 Score=101.02 Aligned_cols=204 Identities=20% Similarity=0.244 Sum_probs=119.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHh-Hc
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHT-SI 97 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l 97 (794)
+.+....+||++|+||||||+.++. .....|. .++...+-. .++.++.+.-++ ..
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gv-----------------kdlr~i~e~a~~~~~ 101 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGV-----------------KDLREIIEEARKNRL 101 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccH-----------------HHHHHHHHHHHHHHh
Confidence 4677777999999999999999988 4444443 222211111 222233333322 23
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEE--Eccchhh---hhcccccceEEccCCChHhHHHHHHHHhhC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILV--TTRKETV---ARMMESTDVISIKELSEHECWSLFKRFAFS 172 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v---~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~ 172 (794)
.+++.+|++|.|..-+..+-+.+...+. .|.-|+| ||-++.. ........++++++|+.++-.+++.+.+..
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred cCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhh
Confidence 4889999999998777777777665544 3666665 5555432 112345679999999999999999884432
Q ss_pred CCCCCC--hh-HHHHHHHHHHhhcCCCchH----HHHHHhhhcCCC--CHHHHHHHHhhhhcccc---hhcccchhHHHh
Q 045633 173 GRSPTD--CE-QLEEIGRKIVGKCKGLPLA----AKTIGSLLRFKK--TREEWQLILNSEMWQLE---DFEKNLLAPLQL 240 (794)
Q Consensus 173 ~~~~~~--~~-~~~~~~~~i~~~~~g~Pla----l~~~~~~l~~~~--~~~~w~~~l~~~~~~~~---~~~~~~~~~l~~ 240 (794)
...... .. -.++....+++.++|--.+ +++++..-+... ..+..++++++.....+ +.+-++.+++.-
T Consensus 179 ~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hK 258 (436)
T COG2256 179 EERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHK 258 (436)
T ss_pred hhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHH
Confidence 222111 01 1134455677778776543 234444433322 35666666665333222 223456777777
Q ss_pred hhcCCChHH
Q 045633 241 SYNDLPPEI 249 (794)
Q Consensus 241 sy~~L~~~~ 249 (794)
|...=++..
T Consensus 259 SvRGSD~dA 267 (436)
T COG2256 259 SVRGSDPDA 267 (436)
T ss_pred hhccCCcCH
Confidence 777665543
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.94 E-value=1.8e-09 Score=107.72 Aligned_cols=189 Identities=22% Similarity=0.199 Sum_probs=92.6
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHH---------
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI--------- 72 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i--------- 72 (794)
|.++|.+.+... ..+.+.|+|+.|+|||+|++++.+ .....-..++|+...+..... ....+
T Consensus 7 el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 7 ELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp HHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 556666655542 356788999999999999999987 332211134555544433222 22222
Q ss_pred -HHHhcCCCC----------CCCCHHHHHHHHHhHc--CCceEEEEEeCCCCCC------ccChhhhHhhccC--CCCCc
Q 045633 73 -IEGLEGSLP----------NLGELNSLLEYIHTSI--KGKKFFLILDDVWTDD------HSKWEPFHNCLMN--GLCGS 131 (794)
Q Consensus 73 -~~~l~~~~~----------~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~------~~~~~~l~~~l~~--~~~gs 131 (794)
.+.+....+ ...........+.+.+ .+++++||+||+.... ..-...+...+.. .....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 111211111 0112222333333333 2345999999994432 0111223333332 12233
Q ss_pred EEEEEccchhhhhc--------ccccceEEccCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHH
Q 045633 132 RILVTTRKETVARM--------MESTDVISIKELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKT 202 (794)
Q Consensus 132 ~iivTtr~~~v~~~--------~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 202 (794)
.+|+++....+... .+....+.+++|+.+++++++....... ... +.-.+...+|...+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL--PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc--cCCHHHHHHHHHHhCCCHHHHhc
Confidence 44454444333221 2334469999999999999998865443 111 12345568899999999988764
No 32
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.87 E-value=2.8e-09 Score=107.29 Aligned_cols=236 Identities=22% Similarity=0.217 Sum_probs=161.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccC-CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
..|.|.++|.|||||||++-.+.. +...| +.+.++++..-.+...+.-.++..++..... -+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 568999999999999999988876 45667 5677888777777777777777766654322 2334455666677
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhhcccccceEEccCCChH-hHHHHHHHHhhCCCCC-
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVARMMESTDVISIKELSEH-ECWSLFKRFAFSGRSP- 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~l~~~-ea~~Lf~~~~~~~~~~- 176 (794)
++|.++|+||..+. ..+-..+...+....+.-+|+.|+|+.-. +.++....+++++.. ++.++|...+......
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998321 12334455556666666678999997533 244566777877766 6889986655433322
Q ss_pred CChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCCCHHHHHHHHhhhh------ccc-chhcccchhHHHhhhcCCChHH
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWQLILNSEM------WQL-EDFEKNLLAPLQLSYNDLPPEI 249 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~------~~~-~~~~~~~~~~l~~sy~~L~~~~ 249 (794)
.-.......+.+|++..+|.|++|..+++..+.- ....-.+.+++.- ... .-.++.....+.+||.-|...+
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1112335567889999999999999999887532 2222222222111 111 1224678999999999999999
Q ss_pred HhhhhhcccCCCCcccC
Q 045633 250 KRCFLYCVVFPKDYDLD 266 (794)
Q Consensus 250 k~~fl~la~fp~~~~i~ 266 (794)
+-.|-.++.|...|...
T Consensus 242 ~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 242 RALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHHhcchhhhhhhhccc
Confidence 99999999998877655
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.86 E-value=3.6e-08 Score=102.84 Aligned_cols=254 Identities=17% Similarity=0.106 Sum_probs=125.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-CCCCHH----HHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-NLGELN----SLLEYIH 94 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~----~~~~~l~ 94 (794)
..+.+.|+|++|+||||+|+.+++ +....+ .++.... ......+..++..+..... -.++++ ...+.+.
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~--~l~~~~---~~~~~~~-~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~ 123 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIAN--EMGVNI---RITSGPA-LEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILY 123 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHH--HhCCCe---EEEeccc-ccChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHH
Confidence 456788999999999999999998 333221 2222211 1111122222222211100 000000 1112222
Q ss_pred hHcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhhcc-c-ccceEEccCCChHhHHHHHHHHhhC
Q 045633 95 TSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVARMM-E-STDVISIKELSEHECWSLFKRFAFS 172 (794)
Q Consensus 95 ~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~-~-~~~~~~l~~l~~~ea~~Lf~~~~~~ 172 (794)
..+.+.+..+|+|+..... .+ ...++ +.+-|..|++...+...+ . ....+++++++.++..+++.+.+..
T Consensus 124 ~~~e~~~~~~~l~~~~~~~--~~---~~~l~---~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~ 195 (328)
T PRK00080 124 PAMEDFRLDIMIGKGPAAR--SI---RLDLP---PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI 195 (328)
T ss_pred HHHHhcceeeeeccCcccc--ce---eecCC---CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 3333334444444431110 00 00111 134455666644332221 1 1346899999999999999988765
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCCCHHHHHHHHhhhhcccchhcccchhHHHhhhcCCChHHHhh
Q 045633 173 GRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWQLILNSEMWQLEDFEKNLLAPLQLSYNDLPPEIKRC 252 (794)
Q Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~ 252 (794)
.+... -.+.+..|++.|+|.|..+..+...+ ..|....... .-....-......+...+..|++..+..
T Consensus 196 ~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~-~I~~~~v~~~l~~~~~~~~~l~~~~~~~ 264 (328)
T PRK00080 196 LGVEI----DEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDG-VITKEIADKALDMLGVDELGLDEMDRKY 264 (328)
T ss_pred cCCCc----CHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCC-CCCHHHHHHHHHHhCCCcCCCCHHHHHH
Confidence 44322 24567889999999996554444332 1222111100 0001111223345667778888877777
Q ss_pred hh-hcccCCCCcccChhHHHHHHHHcCCccccCCcchhhhhhHHHH-HHHhccCcccccC
Q 045633 253 FL-YCVVFPKDYDLDKGELVRLWMAQGYIEKKGNIEMEMTGGWYFD-FLASRSFFQDFDE 310 (794)
Q Consensus 253 fl-~la~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~l~-~L~~~sll~~~~~ 310 (794)
+. ....|..+ .+..+.+.... - ......+..++ .|++.++++....
T Consensus 265 l~~~~~~~~~~-~~~~~~~a~~l-----g------~~~~~~~~~~e~~Li~~~li~~~~~ 312 (328)
T PRK00080 265 LRTIIEKFGGG-PVGLDTLAAAL-----G------EERDTIEDVYEPYLIQQGFIQRTPR 312 (328)
T ss_pred HHHHHHHcCCC-ceeHHHHHHHH-----C------CCcchHHHHhhHHHHHcCCcccCCc
Confidence 65 55556544 45444433221 1 01223344566 7899999975443
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.85 E-value=6.5e-08 Score=100.40 Aligned_cols=253 Identities=16% Similarity=0.083 Sum_probs=124.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-CCCCH----HHHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-NLGEL----NSLLEYIH 94 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~----~~~~~~l~ 94 (794)
..+.+.++|++|+|||+||+.+++ +....+ ..+......... .+...+..+..... -.+++ ....+.+.
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~---~~~~~~~~~~~~-~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~ 102 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIAN--EMGVNL---KITSGPALEKPG-DLAAILTNLEEGDVLFIDEIHRLSPAVEELLY 102 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HhCCCE---EEeccchhcCch-hHHHHHHhcccCCEEEEehHhhhCHHHHHHhh
Confidence 456688999999999999999987 333222 122211111111 12222222221100 00000 11223333
Q ss_pred hHcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhhcc--cccceEEccCCChHhHHHHHHHHhhC
Q 045633 95 TSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVARMM--ESTDVISIKELSEHECWSLFKRFAFS 172 (794)
Q Consensus 95 ~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--~~~~~~~l~~l~~~ea~~Lf~~~~~~ 172 (794)
..+.+.+..+|+|+.... ..+. ..+ .+.+-|..||+...+...+ .....+.+++++.++..+++.+.+..
T Consensus 103 ~~~~~~~~~~v~~~~~~~--~~~~---~~~---~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~ 174 (305)
T TIGR00635 103 PAMEDFRLDIVIGKGPSA--RSVR---LDL---PPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL 174 (305)
T ss_pred HHHhhhheeeeeccCccc--ccee---ecC---CCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH
Confidence 444444555555554221 1111 011 1234455667764433221 11346789999999999999988764
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCCCHHHHHHHHhhhhcccc-hhcccchhHHHhhhcCCChHHHh
Q 045633 173 GRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWQLILNSEMWQLE-DFEKNLLAPLQLSYNDLPPEIKR 251 (794)
Q Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~~-~~~~~~~~~l~~sy~~L~~~~k~ 251 (794)
..... ..+.+..|++.|+|.|..+..++..+ |..+......... ..-......+...|..++++.+.
T Consensus 175 ~~~~~----~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~ 242 (305)
T TIGR00635 175 LNVEI----EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRK 242 (305)
T ss_pred hCCCc----CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 33322 24556779999999997665444432 1111000000000 00011222256677888887777
Q ss_pred hhh-hcccCCCCcccChhHHHHHHHHcCCccccCCcchhhhhhHHHH-HHHhccCcccccC
Q 045633 252 CFL-YCVVFPKDYDLDKGELVRLWMAQGYIEKKGNIEMEMTGGWYFD-FLASRSFFQDFDE 310 (794)
Q Consensus 252 ~fl-~la~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~l~-~L~~~sll~~~~~ 310 (794)
.+. .++.+..+ .+....+.... |. ........++ .|+++++++....
T Consensus 243 ~L~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~~li~~~~~ 291 (305)
T TIGR00635 243 LLSVLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVYEPYLLQIGFLQRTPR 291 (305)
T ss_pred HHHHHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhhhHHHHHcCCcccCCc
Confidence 665 44555432 33333322211 11 1223444577 6999999975443
No 35
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.76 E-value=1.2e-08 Score=91.06 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=79.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCcccccc-----CCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIEN-----FDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIH 94 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-----f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 94 (794)
+-+++.|+|.+|+|||++++++++. .... -..++|+.+....+...+...++++++..........+..+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4578999999999999999999873 3221 24577999988779999999999999887665456667777777
Q ss_pred hHcCCc-eEEEEEeCCCCC-CccChhhhHhhccCCCCCcEEEEEccc
Q 045633 95 TSIKGK-KFFLILDDVWTD-DHSKWEPFHNCLMNGLCGSRILVTTRK 139 (794)
Q Consensus 95 ~~l~~~-~~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 139 (794)
+.+... ..+||+|+++.- ....++.+.. +.+ ..+.++|+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 777544 469999999554 3333444433 333 556778887765
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.75 E-value=6.9e-08 Score=94.74 Aligned_cols=152 Identities=13% Similarity=0.177 Sum_probs=92.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
+.+.|||+.|+|||+||+++++ +.......+.|+++.... .... .+.+.+. +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~~~~---~~~~---------------------~~~~~~~-~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLSKSQ---YFSP---------------------AVLENLE-QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHHHhh---hhhH---------------------HHHhhcc-cC
Confidence 5688999999999999999998 444344456787764210 0000 1111122 23
Q ss_pred EEEEEeCCCCCC-ccChhh-hHhhccCC-CCCcEEEE-Eccc---------hhhhhcccccceEEccCCChHhHHHHHHH
Q 045633 102 FFLILDDVWTDD-HSKWEP-FHNCLMNG-LCGSRILV-TTRK---------ETVARMMESTDVISIKELSEHECWSLFKR 168 (794)
Q Consensus 102 ~LlvlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iiv-Ttr~---------~~v~~~~~~~~~~~l~~l~~~ea~~Lf~~ 168 (794)
-+||+||+|... ...|+. +...+... ..|..+|| |++. +.+...+....++++++++.++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 589999997632 233432 33323222 23555654 4443 23444445566899999999999999998
Q ss_pred HhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHH
Q 045633 169 FAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIG 204 (794)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 204 (794)
.++..+.... +++..-|++++.|-.-++..+-
T Consensus 173 ~a~~~~l~l~----~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 173 NAYQRGIELS----DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHH
Confidence 8875443222 4556678888877766554433
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.73 E-value=3.1e-09 Score=111.64 Aligned_cols=237 Identities=22% Similarity=0.162 Sum_probs=125.2
Q ss_pred cCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCC---ccccccCccccCccCCcEEeccC--CC-ccC
Q 045633 376 FDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLG---DKTIEIPRGLENLIHLRYLQLSS--VE-ELP 449 (794)
Q Consensus 376 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~lp~~i~~l~~L~~L~L~~--~~-~lp 449 (794)
..+.+|+.|.+.++....... ..++..+...+.|+.|+++++.++ ..+..++..+..+.+|++|++++ +. ..+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~-~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAA-KALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHH-HHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 344557777777663221111 223444556666777777776632 11122344556667777777776 22 233
Q ss_pred ccccCCCc---cceec--CcCCC-----ccCcccccc-cCCceeEecccccc-----cCCCCCCCCCCCCccCceEeccc
Q 045633 450 ETCCELLN---LQTLD--CLSLK-----RLPQGIGKL-INLRHLIFDVFGVD-----YVPNGFERLTGLRTLSGFTVARV 513 (794)
Q Consensus 450 ~~i~~L~~---L~~L~--~~~l~-----~lp~~~~~L-~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~~~~~~~~ 513 (794)
..+..+.+ |++|+ ++.+. .+...+..+ ++|+.|+++++.+. .++..+..+++|++|+
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~------- 171 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN------- 171 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE-------
Confidence 33333333 66666 22332 122334455 66777777665554 2222333444444443
Q ss_pred cCCCCCCccCcccccccccCCCeeEEccccCCC-ChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHH
Q 045633 514 DGEYSSKACNLEGLGNLNHLRGFLRICGLGNVT-AADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQ 592 (794)
Q Consensus 514 ~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~ 592 (794)
+.... +. .........+...++|+.|++++|.... ...
T Consensus 172 -------------------------l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~---------------~~~ 210 (319)
T cd00116 172 -------------------------LANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTD---------------EGA 210 (319)
T ss_pred -------------------------CcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccCh---------------HHH
Confidence 22110 01 0011122234455788899998886541 002
Q ss_pred HHHhhhCCCCCCccEEEEeecCCCccCCCCchh-cc----ccCccEEeecCCCCCC----cCC-CCCCCCCcceeeeccc
Q 045633 593 EAICEALQAPPNIESLNITGFEGRRLIFSSNWT-AS----LDKLKRLDLAFCPRCE----IMP-PLGKLPSLEILRIAEM 662 (794)
Q Consensus 593 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~-~~----l~~L~~L~L~~~~~l~----~l~-~l~~L~~L~~L~l~~~ 662 (794)
......+..+++|+.|++++|...... +..+ .. .++|+.|++++|.... .+. .+..+++|++++++++
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~--~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAG--AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHH--HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 334456667889999999988754310 1111 12 3789999999985321 111 2555688999999875
Q ss_pred c
Q 045633 663 V 663 (794)
Q Consensus 663 ~ 663 (794)
.
T Consensus 289 ~ 289 (319)
T cd00116 289 K 289 (319)
T ss_pred C
Confidence 4
No 38
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.70 E-value=2.5e-07 Score=91.52 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=90.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
..+.|.|+|+.|+|||++|+.+++. .......++++++..-... ... +...+++
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~---------------------~~~~~~~ 90 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA---DPE---------------------VLEGLEQ 90 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh---HHH---------------------HHhhccc
Confidence 4567889999999999999999873 3333345667765432110 000 1111222
Q ss_pred ceEEEEEeCCCCCCccC--hhhhHhhccC-CCCCcEEEEEccchh---------hhhcccccceEEccCCChHhHHHHHH
Q 045633 100 KKFFLILDDVWTDDHSK--WEPFHNCLMN-GLCGSRILVTTRKET---------VARMMESTDVISIKELSEHECWSLFK 167 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~~~--~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~l~~~ea~~Lf~ 167 (794)
.-+||+||++...... ...+...+.. ...+.++|+||+... +...+.....+++++++.++...++.
T Consensus 91 -~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~ 169 (226)
T TIGR03420 91 -ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQ 169 (226)
T ss_pred -CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHH
Confidence 2389999996533221 2334433322 122347889888532 11122224578999999999999988
Q ss_pred HHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHH
Q 045633 168 RFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIG 204 (794)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 204 (794)
..+...+.... .+..+.+++.+.|.|..+.-+.
T Consensus 170 ~~~~~~~~~~~----~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 170 SRAARRGLQLP----DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHcCCCCC----HHHHHHHHHhccCCHHHHHHHH
Confidence 76543332221 3445667778888887776554
No 39
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.69 E-value=1.2e-06 Score=96.98 Aligned_cols=204 Identities=12% Similarity=0.056 Sum_probs=118.2
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccc---cccCC--eEEEEEecCCCCHHHHHHHHHHHh
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDV---IENFD--KRIWVCVSDPFDEFRIAKAIIEGL 76 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~---~~~f~--~~~~v~~~~~~~~~~~~~~i~~~l 76 (794)
|.++|...|..... +.....++.|+|++|.|||++++.|.+..+. ..... .+++|++..-.+...++..|++++
T Consensus 763 EIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL 841 (1164)
T PTZ00112 763 EIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQL 841 (1164)
T ss_pred HHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHH
Confidence 45556555543321 2223367889999999999999999874211 11111 367888877788888999999988
Q ss_pred cCCCCC-CCCHHHHHHHHHhHcC---CceEEEEEeCCCCCCccChhhhHhhccC-CCCCcEEEE--Eccchh--------
Q 045633 77 EGSLPN-LGELNSLLEYIHTSIK---GKKFFLILDDVWTDDHSKWEPFHNCLMN-GLCGSRILV--TTRKET-------- 141 (794)
Q Consensus 77 ~~~~~~-~~~~~~~~~~l~~~l~---~~~~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv--Ttr~~~-------- 141 (794)
....+. .....+....+...+. ....+||||+++.-....-+.+...+.+ ...+++|+| ++.+..
T Consensus 842 ~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPR 921 (1164)
T PTZ00112 842 FNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPR 921 (1164)
T ss_pred cCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhh
Confidence 544322 2223344445544442 2346899999954321111122222211 123555544 333211
Q ss_pred hhhcccccceEEccCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhh
Q 045633 142 VARMMESTDVISIKELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLL 207 (794)
Q Consensus 142 v~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 207 (794)
+...+. ...+..+|.+.++-.+++..++...........++-+|+.++...|..-.||.++-.+.
T Consensus 922 LRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 922 CRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 111222 22466799999999999998886543333445555556656666677777887665554
No 40
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.68 E-value=6.4e-09 Score=109.20 Aligned_cols=222 Identities=24% Similarity=0.168 Sum_probs=123.7
Q ss_pred hHHHhccCCccceEEEcccCCCc-cccccCccccCccCCcEEeccC--CCc-------cCccccCCCccceec--CcCCC
Q 045633 400 LQGLFDQLTCLRALKIEDFGLGD-KTIEIPRGLENLIHLRYLQLSS--VEE-------LPETCCELLNLQTLD--CLSLK 467 (794)
Q Consensus 400 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~lp~~i~~l~~L~~L~L~~--~~~-------lp~~i~~L~~L~~L~--~~~l~ 467 (794)
....+..+..|++|+++++.++. ....++..+...++|++|++++ +.. ++..+.++.+|+.|+ ...+.
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 34556777789999999998421 1234666677788899999987 332 223345555666665 12222
Q ss_pred -ccCcccccccC---CceeEecccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCccccccc-ccCCCeeEEccc
Q 045633 468 -RLPQGIGKLIN---LRHLIFDVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNL-NHLRGFLRICGL 542 (794)
Q Consensus 468 -~lp~~~~~L~~---L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L-~~L~~~l~~~~~ 542 (794)
..+..+..+.+ |++|+++++.+..-+ .......+..+ ++|+ .+.+..+
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~--------------------------~~~l~~~l~~~~~~L~-~L~L~~n 147 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRG--------------------------LRLLAKGLKDLPPALE-KLVLGRN 147 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHH--------------------------HHHHHHHHHhCCCCce-EEEcCCC
Confidence 22333333333 666666554443100 00000112222 3333 4444333
Q ss_pred cCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccC--C
Q 045633 543 GNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLI--F 620 (794)
Q Consensus 543 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~ 620 (794)
.-...........+..+++|+.|++++|.... .........+..+++|+.|++++|...... .
T Consensus 148 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---------------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 212 (319)
T cd00116 148 RLEGASCEALAKALRANRDLKELNLANNGIGD---------------AGIRALAEGLKANCNLEVLDLNNNGLTDEGASA 212 (319)
T ss_pred cCCchHHHHHHHHHHhCCCcCEEECcCCCCch---------------HHHHHHHHHHHhCCCCCEEeccCCccChHHHHH
Confidence 21111122234456677899999999987651 001233445566689999999998754220 0
Q ss_pred CCchhccccCccEEeecCCCCCC-cCCCC-----CCCCCcceeeecccc
Q 045633 621 SSNWTASLDKLKRLDLAFCPRCE-IMPPL-----GKLPSLEILRIAEMV 663 (794)
Q Consensus 621 ~p~~~~~l~~L~~L~L~~~~~l~-~l~~l-----~~L~~L~~L~l~~~~ 663 (794)
.+..+..+++|+.|++++|..-. .+..+ ...+.|+.|++++|.
T Consensus 213 l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 213 LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 03455678999999999995322 11111 135899999999875
No 41
>PF13173 AAA_14: AAA domain
Probab=98.65 E-value=1.1e-07 Score=84.04 Aligned_cols=120 Identities=26% Similarity=0.343 Sum_probs=78.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
-+++.|.|+.|+||||++++++++. . ....++|+++.+........ .+ ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~--~-~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL--L-PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh--c-ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccC
Confidence 3689999999999999999998732 2 23557788776532211000 00 223333333347
Q ss_pred eEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhhc------ccccceEEccCCChHhH
Q 045633 101 KFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVARM------MESTDVISIKELSEHEC 162 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~------~~~~~~~~l~~l~~~ea 162 (794)
+.+||+|++ .....|......+....+..+|++|+........ .+....+++.||+-.|.
T Consensus 62 ~~~i~iDEi--q~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEI--QYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehh--hhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 889999999 4445777766666666667899999998655422 12345788999987763
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=3.2e-09 Score=105.93 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=104.7
Q ss_pred CCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC---CCCCCCcceeeecccccceEeCcccccCcc
Q 045633 601 APPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP---LGKLPSLEILRIAEMVSVKKVGDEFLGIGI 677 (794)
Q Consensus 601 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~---l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~ 677 (794)
.+..|+.|..+++........-....+..+|+.|-+..|..+...-. -.+.+.|+.|++.+|.....- .+...
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sl-- 367 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASL-- 367 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhh--
Confidence 45566666666665432210011123567777777777765443322 235677777777766433221 11111
Q ss_pred cCCCccccccCCCccccCCccceeeccccccccccc--cCCCCccCCCcccEEeeccCccCcCC-CcCccCCCCccEEEe
Q 045633 678 RDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWD--FGKEDITIMPQIKSLMIFSCEKLKSL-PDQLLRSTTLESLEI 754 (794)
Q Consensus 678 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~i-p~~~~~l~~L~~L~l 754 (794)
-.++|.|++|.+++|..+.+-. .....-..+..|+.|.+.+||.+..- -+.+..+++|+.+++
T Consensus 368 --------------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 368 --------------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred --------------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 2467888888888776554431 11111236778999999999887552 234556889999999
Q ss_pred ccCccccccccccCCCCCccccccceeeeccccccCCCC
Q 045633 755 GEAPIVEQNFKKDTGKDWSKISHIPNILISGRYEQGGPS 793 (794)
Q Consensus 755 ~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 793 (794)
.+|..+++.-. -...+|+|++.++..+..+.|+
T Consensus 434 ~~~q~vtk~~i------~~~~~~lp~i~v~a~~a~~t~p 466 (483)
T KOG4341|consen 434 IDCQDVTKEAI------SRFATHLPNIKVHAYFAPVTPP 466 (483)
T ss_pred echhhhhhhhh------HHHHhhCccceehhhccCCCCc
Confidence 99988765331 2255799999999999999886
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.51 E-value=9.1e-07 Score=95.26 Aligned_cols=156 Identities=20% Similarity=0.238 Sum_probs=90.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhH-cC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTS-IK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~ 98 (794)
....+.|+|++|+||||+|+.+++ .....| +.++... ... +..+.+ .+..... ..
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~--~~~~~~---~~l~a~~-~~~-~~ir~i-----------------i~~~~~~~~~ 90 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAG--ATDAPF---EALSAVT-SGV-KDLREV-----------------IEEARQRRSA 90 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEeccc-ccH-HHHHHH-----------------HHHHHHhhhc
Confidence 455778999999999999999987 332222 2222211 111 111112 2222111 14
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEE--Eccchh--hh-hcccccceEEccCCChHhHHHHHHHHhhCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILV--TTRKET--VA-RMMESTDVISIKELSEHECWSLFKRFAFSG 173 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--v~-~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~ 173 (794)
+++.+|++|+++.....+.+.+...+.. |..++| ||.+.. +. ........+.+.+++.++..+++.+.+...
T Consensus 91 g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~ 167 (413)
T PRK13342 91 GRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDK 167 (413)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHh
Confidence 5788999999977655566666655543 444444 333322 11 112334688999999999999998865431
Q ss_pred CCCCChhHHHHHHHHHHhhcCCCchHHHHH
Q 045633 174 RSPTDCEQLEEIGRKIVGKCKGLPLAAKTI 203 (794)
Q Consensus 174 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 203 (794)
.... .....+....|++.++|.+..+.-+
T Consensus 168 ~~~~-i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 168 ERGL-VELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred hcCC-CCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 1100 0112455677888999998766433
No 44
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.50 E-value=3e-06 Score=80.73 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=63.7
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+.+-++|+||++.......+.+...+....+.+.+|++|++. .+... ......+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~----g-i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ----G-I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc----C-C
Confidence 557789999996665556777877777655667777777653 22221 123468999999999999988776 1 1
Q ss_pred CChhHHHHHHHHHHhhcCCCch
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPL 198 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Pl 198 (794)
. .+.+..|++.++|.|.
T Consensus 170 ~-----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 S-----EEAAELLLALAGGSPG 186 (188)
T ss_pred C-----HHHHHHHHHHcCCCcc
Confidence 1 3557889999999885
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=4.1e-08 Score=98.69 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=31.8
Q ss_pred cccCCccceeeccccccccccc---cCCC-CccCCCcccEEeeccCccCcCCCc--CccCCCCccEEEeccCcc
Q 045633 692 VVAFPKLEKLDLWIMLQLEEWD---FGKE-DITIMPQIKSLMIFSCEKLKSLPD--QLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 692 ~~~~~~L~~L~l~~~~~l~~~~---~~~~-~~~~l~~L~~L~l~~c~~l~~ip~--~~~~l~~L~~L~l~~~~~ 759 (794)
.+.||.|+.|+++.+ .+.++- .+.. ....||+|++|.+..| .+..++. .+..+++|+.|.+..++.
T Consensus 267 ~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcccccc
Confidence 345666666666542 222221 1110 1235666666666666 3444433 133455666666655554
No 46
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.49 E-value=1.4e-06 Score=85.57 Aligned_cols=131 Identities=22% Similarity=0.283 Sum_probs=86.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
+.+..+.+||++|+||||||+.+....+-. ...||..+....-..-.+.|.++... ...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~----SyrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKH----SYRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCC----ceEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 467778899999999999999998743222 25677776544433344444443211 11246
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEE--Eccchhh---hhcccccceEEccCCChHhHHHHHHHHhh
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILV--TTRKETV---ARMMESTDVISIKELSEHECWSLFKRFAF 171 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v---~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~ 171 (794)
++|.+|++|.|..-+..+-+.+ ||.-.+|.-++| ||.++.. ...+....++.++.|..++-..++.+.+.
T Consensus 221 krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHH
Confidence 7899999999976555555554 344455776665 6666532 12234567899999999999999887443
No 47
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.49 E-value=6.5e-08 Score=88.80 Aligned_cols=131 Identities=19% Similarity=0.300 Sum_probs=46.9
Q ss_pred CCCCccEEEEeecCCCccCCCCchhc-cccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccccCcccC
Q 045633 601 APPNIESLNITGFEGRRLIFSSNWTA-SLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRD 679 (794)
Q Consensus 601 ~~~~L~~L~l~~~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~ 679 (794)
.+..++.|+|.|+....+ +.++ .+.+|+.|++++| .++.++.+..|++|+.|++++ +.++.++..+
T Consensus 17 n~~~~~~L~L~~n~I~~I----e~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~-N~I~~i~~~l------- 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI----ENLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSN-NRISSISEGL------- 83 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--S-S---S-CHHH-------
T ss_pred cccccccccccccccccc----cchhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCC-CCCCccccch-------
Confidence 445688899999887665 3454 5788999999998 567777788889999999986 4455554321
Q ss_pred CCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCc----CccCCCCccEEEec
Q 045633 680 HNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPD----QLLRSTTLESLEIG 755 (794)
Q Consensus 680 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~----~~~~l~~L~~L~l~ 755 (794)
...+|+|+.|.+.+ +++.++.. -..+..+|+|+.|++.+||.-. -+. .+..+|+|+.||-.
T Consensus 84 ------------~~~lp~L~~L~L~~-N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 ------------DKNLPNLQELYLSN-NKISDLNE-LEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp ------------HHH-TT--EEE-TT-S---SCCC-CGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTE
T ss_pred ------------HHhCCcCCEEECcC-CcCCChHH-hHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCE
Confidence 13578888888876 45555432 1234577888888888886432 232 24457777777655
Q ss_pred cCcc
Q 045633 756 EAPI 759 (794)
Q Consensus 756 ~~~~ 759 (794)
....
T Consensus 149 ~V~~ 152 (175)
T PF14580_consen 149 DVTE 152 (175)
T ss_dssp ETTS
T ss_pred EccH
Confidence 4433
No 48
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.46 E-value=1.8e-06 Score=81.00 Aligned_cols=151 Identities=23% Similarity=0.256 Sum_probs=82.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
+.+..+.+||++|+||||||..+++ +....|. +++... . ....++...+.. +
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~---i------------------~k~~dl~~il~~-l- 99 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPA---I------------------EKAGDLAAILTN-L- 99 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC-----------------------SCHHHHHHHHT---
T ss_pred CCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchh---h------------------hhHHHHHHHHHh-c-
Confidence 3567788999999999999999998 4544432 222211 0 111222222222 2
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCC--------CCCcE-----------EEEEccchhhhhcccc--cceEEccCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNG--------LCGSR-----------ILVTTRKETVARMMES--TDVISIKEL 157 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~--------~~gs~-----------iivTtr~~~v~~~~~~--~~~~~l~~l 157 (794)
+++-+|++|++..-+..+-+.+..++.++ +++.| |=.|||...+...+.. ..+.+++..
T Consensus 100 ~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y 179 (233)
T PF05496_consen 100 KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFY 179 (233)
T ss_dssp -TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----
T ss_pred CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcC
Confidence 24557888999776666666666665442 22222 2247776544433322 234579999
Q ss_pred ChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHH
Q 045633 158 SEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 158 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
+.+|-.++..+.+..-.. +-..+.+.+|++++.|-|.-..
T Consensus 180 ~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 180 SEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHH
Confidence 999999999876654333 2335778999999999996443
No 49
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=6.8e-06 Score=86.78 Aligned_cols=97 Identities=12% Similarity=0.127 Sum_probs=66.0
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhhc-ccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VARM-MESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+++-++|+|+++......++.+...+.......++|++|.+.. +... .+....+++.+++.++..+.+...+...+..
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4567999999976655566777777766555667777776532 3222 2334689999999999999888766554322
Q ss_pred CChhHHHHHHHHHHhhcCCCchH
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPLA 199 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Pla 199 (794)
. .++.+..|++.++|.|..
T Consensus 198 i----~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 198 T----DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred C----CHHHHHHHHHHcCCCHHH
Confidence 2 134567788889998753
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=3.7e-08 Score=93.87 Aligned_cols=135 Identities=23% Similarity=0.205 Sum_probs=72.8
Q ss_pred cCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEee
Q 045633 557 EKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDL 636 (794)
Q Consensus 557 ~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L 636 (794)
..++.|+.+++|+|.+ .++.++..-.|.++.|+++.|....+ . .+..+++|..|+|
T Consensus 281 dTWq~LtelDLS~N~I--------------------~~iDESvKL~Pkir~L~lS~N~i~~v---~-nLa~L~~L~~LDL 336 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLI--------------------TQIDESVKLAPKLRRLILSQNRIRTV---Q-NLAELPQLQLLDL 336 (490)
T ss_pred chHhhhhhccccccch--------------------hhhhhhhhhccceeEEeccccceeee---h-hhhhcccceEeec
Confidence 3456677777777653 23334455566777777777666554 2 2566677777777
Q ss_pred cCCCCCCcCC-CCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccC
Q 045633 637 AFCPRCEIMP-PLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFG 715 (794)
Q Consensus 637 ~~~~~l~~l~-~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 715 (794)
++|. +..+. +-.+|.+.+.|.|++ +.++.+.. ++.+=+|..|++++ ++++.+..
T Consensus 337 S~N~-Ls~~~Gwh~KLGNIKtL~La~-N~iE~LSG---------------------L~KLYSLvnLDl~~-N~Ie~lde- 391 (490)
T KOG1259|consen 337 SGNL-LAECVGWHLKLGNIKTLKLAQ-NKIETLSG---------------------LRKLYSLVNLDLSS-NQIEELDE- 391 (490)
T ss_pred ccch-hHhhhhhHhhhcCEeeeehhh-hhHhhhhh---------------------hHhhhhheeccccc-cchhhHHH-
Confidence 7763 22222 233455666666664 22222211 33445556666655 33333321
Q ss_pred CCCccCCCcccEEeeccCccCcCCCc
Q 045633 716 KEDITIMPQIKSLMIFSCEKLKSLPD 741 (794)
Q Consensus 716 ~~~~~~l~~L~~L~l~~c~~l~~ip~ 741 (794)
-..+.++|+|+.|.+.+|| +..+|+
T Consensus 392 V~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 392 VNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred hcccccccHHHHHhhcCCC-ccccch
Confidence 1224467777777777775 444443
No 51
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=6.3e-06 Score=92.81 Aligned_cols=102 Identities=14% Similarity=0.140 Sum_probs=71.3
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.+++-++|+|+++......+..+...+.......++|++|.+. .+... ......|.+.+++.++..+.+.+.+...+.
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4677899999998777777888887777655567777766653 33322 233578999999999999999886654322
Q ss_pred CCChhHHHHHHHHHHhhcCCCch-HHHHH
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLPL-AAKTI 203 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 203 (794)
.. ..+.+..|++.++|.|. |+.++
T Consensus 197 ~~----edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 197 PF----EAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 24456778999999885 44443
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.41 E-value=1.5e-08 Score=105.00 Aligned_cols=174 Identities=24% Similarity=0.275 Sum_probs=124.1
Q ss_pred hHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCccccc
Q 045633 400 LQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGK 475 (794)
Q Consensus 400 ~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~ 475 (794)
+|..++.|-.|..|.|..|. +..+|..++++..|.||+|+. +..+|..++.|. |+.|- .++++.+|..++.
T Consensus 90 lp~~~~~f~~Le~liLy~n~----~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~ 164 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNC----IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGL 164 (722)
T ss_pred CchHHHHHHHHHHHHHHhcc----ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCccccc
Confidence 44456677778888888888 778899999999999999987 888999888774 66666 7788999999998
Q ss_pred ccCCceeEecccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhcc
Q 045633 476 LINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAH 555 (794)
Q Consensus 476 L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~ 555 (794)
+..|.+|+.++|.+..+|..++.+.+|+.|.+..... ..+. ..
T Consensus 165 ~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l------------------~~lp-------------------~E 207 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL------------------EDLP-------------------EE 207 (722)
T ss_pred chhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh------------------hhCC-------------------HH
Confidence 8899999999999999999899888888886322111 0010 01
Q ss_pred ccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhc---cccCcc
Q 045633 556 LEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTA---SLDKLK 632 (794)
Q Consensus 556 l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~---~l~~L~ 632 (794)
+. .-.|..|++++|... .++-.|..+++|++|.|.+|..... |.-+. ...=-+
T Consensus 208 l~-~LpLi~lDfScNkis--------------------~iPv~fr~m~~Lq~l~LenNPLqSP---PAqIC~kGkVHIFK 263 (722)
T KOG0532|consen 208 LC-SLPLIRLDFSCNKIS--------------------YLPVDFRKMRHLQVLQLENNPLQSP---PAQICEKGKVHIFK 263 (722)
T ss_pred Hh-CCceeeeecccCcee--------------------ecchhhhhhhhheeeeeccCCCCCC---hHHHHhccceeeee
Confidence 11 124667788877633 3445677788888888888877664 54433 222345
Q ss_pred EEeecCC
Q 045633 633 RLDLAFC 639 (794)
Q Consensus 633 ~L~L~~~ 639 (794)
+|+...|
T Consensus 264 yL~~qA~ 270 (722)
T KOG0532|consen 264 YLSTQAC 270 (722)
T ss_pred eecchhc
Confidence 6666666
No 53
>PRK04195 replication factor C large subunit; Provisional
Probab=98.41 E-value=2.1e-05 Score=86.56 Aligned_cols=238 Identities=17% Similarity=0.156 Sum_probs=127.1
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN 82 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 82 (794)
++++.+|+..... +...+.+.|+|++|+||||+|+.+++. .. |+ ++.++.+...+... ...++.......
T Consensus 23 ~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~~~-i~~~i~~~~~~~-- 92 (482)
T PRK04195 23 KEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTADV-IERVAGEAATSG-- 92 (482)
T ss_pred HHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccHHH-HHHHHHHhhccC--
Confidence 4566677654321 122678889999999999999999883 32 32 44455554333322 222222221110
Q ss_pred CCCHHHHHHHHHhHcCCceEEEEEeCCCCCCc----cChhhhHhhccCCCCCcEEEEEccchh-hhh--cccccceEEcc
Q 045633 83 LGELNSLLEYIHTSIKGKKFFLILDDVWTDDH----SKWEPFHNCLMNGLCGSRILVTTRKET-VAR--MMESTDVISIK 155 (794)
Q Consensus 83 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~--~~~~~~~~~l~ 155 (794)
..+..++-+||+|+++.... ..+..+...+... +..||+|+.+.. ... .......+.+.
T Consensus 93 ------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~Lrsr~~~I~f~ 158 (482)
T PRK04195 93 ------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRELRNACLMIEFK 158 (482)
T ss_pred ------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhHhccceEEEec
Confidence 01113678999999965322 2345555554432 345666665432 111 11234678999
Q ss_pred CCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHH-HHHhhhcCCC--CHHHHHHHHhhhhcccchhcc
Q 045633 156 ELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAK-TIGSLLRFKK--TREEWQLILNSEMWQLEDFEK 232 (794)
Q Consensus 156 ~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~-~~~~~l~~~~--~~~~w~~~l~~~~~~~~~~~~ 232 (794)
+++..+....+...+...+.... .+....|++.++|-...+. .+-.+..... +.+....+.. .+...
T Consensus 159 ~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~------~d~~~ 228 (482)
T PRK04195 159 RLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR------RDREE 228 (482)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc------CCCCC
Confidence 99999999988877755443332 3456778888888765543 3323222111 2333332221 12223
Q ss_pred cchhHHHhhhc-CCChHHHhhhhhcccCCCCcccChhHHHHHHHHcCCccc
Q 045633 233 NLLAPLQLSYN-DLPPEIKRCFLYCVVFPKDYDLDKGELVRLWMAQGYIEK 282 (794)
Q Consensus 233 ~~~~~l~~sy~-~L~~~~k~~fl~la~fp~~~~i~~~~li~~w~~~g~~~~ 282 (794)
+++.++..-+. .=.......+.. ..++. ..+-.|+.+.+...
T Consensus 229 ~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 229 SIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 45566655544 222233332222 12233 35668999988764
No 54
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.41 E-value=1.8e-06 Score=79.04 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=59.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
..+.+.|+|++|+||||+|+++++. ....-..+++++.............+... ............
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 83 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF------------LVRLLFELAEKA 83 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh------------hHhHHHHhhccC
Confidence 3467889999999999999999983 32222346677665433222211111100 001111222345
Q ss_pred ceEEEEEeCCCCCCccChhhhHhhccCC------CCCcEEEEEccchh
Q 045633 100 KKFFLILDDVWTDDHSKWEPFHNCLMNG------LCGSRILVTTRKET 141 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtr~~~ 141 (794)
++.++|+||++.........+...+... ..+.+||+||....
T Consensus 84 ~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 84 KPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 6789999999643222223333333322 35778888888653
No 55
>PRK08727 hypothetical protein; Validated
Probab=98.40 E-value=3.9e-06 Score=82.53 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=87.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
..+.|+|..|+|||.||+++++ ........++|+++.+ ....+. +... .+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~------~~~~~~--------------~~~~----~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQA------AAGRLR--------------DALE----AL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHH------hhhhHH--------------HHHH----HH-hcC
Confidence 4589999999999999999987 3443334567776432 111111 1111 11 123
Q ss_pred EEEEEeCCCCCC-ccChh-hhHhhccC-CCCCcEEEEEccchh---------hhhcccccceEEccCCChHhHHHHHHHH
Q 045633 102 FFLILDDVWTDD-HSKWE-PFHNCLMN-GLCGSRILVTTRKET---------VARMMESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 102 ~LlvlDdv~~~~-~~~~~-~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
-+||+||+.... ...+. .+...+.. ...|..||+|++... +...+....++++++++.++-.+++.+.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999995422 11222 23322222 123567999998531 2222333568999999999999999987
Q ss_pred hhCCCCCCChhHHHHHHHHHHhhcCCCchHH
Q 045633 170 AFSGRSPTDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
+...+-... ++....|++.++|-.-++
T Consensus 175 a~~~~l~l~----~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGLALD----EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 754333222 445566777777655444
No 56
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=1.3e-05 Score=88.46 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=70.9
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhh-cccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MMESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
++.-++|||+++......+..+...+.......++|+||++.. +.. .......+.++.++.++..+.+.+.+...+..
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 4566899999977766667788777766666788888887754 221 22345689999999999999998876544332
Q ss_pred CChhHHHHHHHHHHhhcCCCc-hHHHHHH
Q 045633 177 TDCEQLEEIGRKIVGKCKGLP-LAAKTIG 204 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 204 (794)
. ..+....|++.++|-. -|+.++-
T Consensus 198 i----d~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 198 F----EPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred C----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 2445667888888855 4665543
No 57
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.40 E-value=8.1e-06 Score=86.27 Aligned_cols=176 Identities=12% Similarity=0.070 Sum_probs=92.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCcccccc-CC-eEEEEEecCCCCH--HHHHH--HHHHHhcCC-CCCCCCHHHHHH-
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIEN-FD-KRIWVCVSDPFDE--FRIAK--AIIEGLEGS-LPNLGELNSLLE- 91 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-f~-~~~~v~~~~~~~~--~~~~~--~i~~~l~~~-~~~~~~~~~~~~- 91 (794)
..+.+.++|+.|+||||+|+.+++ ..... +. ..+++++++-... ..+.. .....+... .......+....
T Consensus 35 ~~~~lll~Gp~GtGKT~la~~~~~--~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (337)
T PRK12402 35 NLPHLLVQGPPGSGKTAAVRALAR--ELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHV 112 (337)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHH
Confidence 344577999999999999999887 33222 22 2445554331100 00000 000000000 000001111111
Q ss_pred --HHHhHc--CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhhc-ccccceEEccCCChHhHHHH
Q 045633 92 --YIHTSI--KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VARM-MESTDVISIKELSEHECWSL 165 (794)
Q Consensus 92 --~l~~~l--~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~l~~~ea~~L 165 (794)
...... .+.+-+||+||++.........+...+......+++|+|+.... +... ......+++.+++.++...+
T Consensus 113 ~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~ 192 (337)
T PRK12402 113 LKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDV 192 (337)
T ss_pred HHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHH
Confidence 111111 23455899999955443334445555554445677888875432 2121 12345788999999999999
Q ss_pred HHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHH
Q 045633 166 FKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 166 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
+.+.+...+.... .+.+..+++.++|.+-.+.
T Consensus 193 l~~~~~~~~~~~~----~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 193 LESIAEAEGVDYD----DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred HHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 9887654443222 3456678888888765543
No 58
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.38 E-value=5.5e-07 Score=88.32 Aligned_cols=89 Identities=20% Similarity=0.103 Sum_probs=60.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC--CCHHHHHHHHHHHhcCCCCCCCCHH------HHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP--FDEFRIAKAIIEGLEGSLPNLGELN------SLLE 91 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 91 (794)
.-+.++|+|++|+|||||+++++++.... +|+.++|+.+... .+..++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999999964333 7999999987766 7888999998443322211111111 1122
Q ss_pred HHHhH-cCCceEEEEEeCC
Q 045633 92 YIHTS-IKGKKFFLILDDV 109 (794)
Q Consensus 92 ~l~~~-l~~~~~LlvlDdv 109 (794)
..... -+++++++++|++
T Consensus 94 ~a~~~~~~G~~vll~iDei 112 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHHHHCCCCEEEEEECH
Confidence 22222 2588999999999
No 59
>PRK09087 hypothetical protein; Validated
Probab=98.38 E-value=6.1e-06 Score=80.40 Aligned_cols=140 Identities=17% Similarity=0.209 Sum_probs=84.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
-+.+.|||+.|+|||+|++.++.. . .+.|++.. ....++...+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~--~-----~~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK--S-----DALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh--c-----CCEEecHH------HcchHHHHhh---------------------hc-
Confidence 356889999999999999988863 1 22344432 1111111111 11
Q ss_pred eEEEEEeCCCCC--CccChhhhHhhccCCCCCcEEEEEccc---------hhhhhcccccceEEccCCChHhHHHHHHHH
Q 045633 101 KFFLILDDVWTD--DHSKWEPFHNCLMNGLCGSRILVTTRK---------ETVARMMESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 101 ~~LlvlDdv~~~--~~~~~~~l~~~l~~~~~gs~iivTtr~---------~~v~~~~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
-+|++||+... ++..+..+...+.. .|..+|+|++. +.+...+....++++++++.++-.+++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999542 12223333333332 25679998874 223333455679999999999999999988
Q ss_pred hhCCCCCCChhHHHHHHHHHHhhcCCCchHHHH
Q 045633 170 AFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKT 202 (794)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 202 (794)
+...+.... +++..-|++++.|-..++..
T Consensus 166 ~~~~~~~l~----~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 166 FADRQLYVD----PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHcCCCCC----HHHHHHHHHHhhhhHHHHHH
Confidence 765433221 45566677777777766654
No 60
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.37 E-value=1.9e-08 Score=104.31 Aligned_cols=126 Identities=25% Similarity=0.334 Sum_probs=79.2
Q ss_pred cCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCc
Q 045633 370 KFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEE 447 (794)
Q Consensus 370 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~ 447 (794)
.+|..+.++..|..|+++.+. . ..+|.-++.++ |++|-+++|+ ++.+|+.|+.+..|..|+.+. +..
T Consensus 112 ~ip~~i~~L~~lt~l~ls~Nq-----l-S~lp~~lC~lp-Lkvli~sNNk----l~~lp~~ig~~~tl~~ld~s~nei~s 180 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQ-----L-SHLPDGLCDLP-LKVLIVSNNK----LTSLPEEIGLLPTLAHLDVSKNEIQS 180 (722)
T ss_pred ecchhhhhhhHHHHhhhccch-----h-hcCChhhhcCc-ceeEEEecCc----cccCCcccccchhHHHhhhhhhhhhh
Confidence 345556666666666666551 1 12233344444 6777777776 666777777666777777665 667
Q ss_pred cCccccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCc
Q 045633 448 LPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSG 507 (794)
Q Consensus 448 lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~ 507 (794)
+|..++.|.+|+.|+ .+++..+|..+..| .|..||++||++..+|-.|.+|+.||+|.+
T Consensus 181 lpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred chHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeee
Confidence 777777777777666 45666666666643 466667777777777766777777776653
No 61
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.5e-06 Score=94.61 Aligned_cols=168 Identities=17% Similarity=0.195 Sum_probs=95.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHH-------hcCC-CCCCCCHHHHHHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEG-------LEGS-LPNLGELNSLLEY 92 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~-------l~~~-~~~~~~~~~~~~~ 92 (794)
.+.+.++|+.|+||||+|+.+++...-.+.+...+|.+.+. ..+... +... .....++.++...
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~ 107 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRRGAHPDVLEIDAASNNSVEDVRDLREK 107 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhcCCCCceEEecccccCCHHHHHHHHHH
Confidence 46678999999999999998887321111122122222110 000000 0000 0001111222222
Q ss_pred HHh-HcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhhc-ccccceEEccCCChHhHHHHHHHH
Q 045633 93 IHT-SIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 93 l~~-~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
+.. -+.+++-++|+|+++......+..+...+....+...+|++|... .+... ......+++.+++.++..+.+.+.
T Consensus 108 ~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i 187 (504)
T PRK14963 108 VLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRL 187 (504)
T ss_pred HhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHH
Confidence 221 123566789999997666666777877776655556666665543 33222 233568999999999999999887
Q ss_pred hhCCCCCCChhHHHHHHHHHHhhcCCCchHH
Q 045633 170 AFSGRSPTDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
+...+.... .+.+..|++.++|.+.-+
T Consensus 188 ~~~egi~i~----~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 188 LEAEGREAE----PEALQLVARLADGAMRDA 214 (504)
T ss_pred HHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 765443222 345677889999988544
No 62
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1.5e-05 Score=82.63 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=98.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCc----cccccCCeEEEEEe-cCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDK----DVIENFDKRIWVCV-SDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIH 94 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~----~~~~~f~~~~~v~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 94 (794)
-.+...++|+.|+||||+|+.+++.. ....++|...|... +......+ .+++.+.+...
T Consensus 25 ~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~--------------- 88 (313)
T PRK05564 25 FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKK--------------- 88 (313)
T ss_pred CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcC---------------
Confidence 45677899999999999998888721 11234454444331 12222222 22222222111
Q ss_pred hHcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhh-h-cccccceEEccCCChHhHHHHHHHHhhC
Q 045633 95 TSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVA-R-MMESTDVISIKELSEHECWSLFKRFAFS 172 (794)
Q Consensus 95 ~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~ 172 (794)
-..+++-++|+|+++..+...+..+...+....+++.+|++|.+.... . .......+.+.++++++....+.+....
T Consensus 89 -p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~ 167 (313)
T PRK05564 89 -PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND 167 (313)
T ss_pred -cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC
Confidence 123566778888887677777888988888777788888888765422 1 1233568999999999998888664321
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCCchHHH
Q 045633 173 GRSPTDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
.. .+.+..++..++|.|..+.
T Consensus 168 ----~~----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 168 ----IK----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ----CC----HHHHHHHHHHcCCCHHHHH
Confidence 11 2336678889999886443
No 63
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.35 E-value=1e-05 Score=79.76 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=88.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
.+.+.|+|+.|+|||+||+.+++ .....-..+.|+++..... ...+..+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~~----- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLDKRAW--------------------FVPEVLEGMEQ----- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHHHHhh--------------------hhHHHHHHhhh-----
Confidence 35788999999999999999887 3333334567776643100 00111111111
Q ss_pred eEEEEEeCCCCCCc-cChhh-hHhhccCC-CCC-cEEEEEccchh---------hhhcccccceEEccCCChHhHHHHHH
Q 045633 101 KFFLILDDVWTDDH-SKWEP-FHNCLMNG-LCG-SRILVTTRKET---------VARMMESTDVISIKELSEHECWSLFK 167 (794)
Q Consensus 101 ~~LlvlDdv~~~~~-~~~~~-l~~~l~~~-~~g-s~iivTtr~~~---------v~~~~~~~~~~~l~~l~~~ea~~Lf~ 167 (794)
--++++||+..... ..|+. +...+... ..| .++|+||+... +...+....++++++++.++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 23789999954321 23322 22222211 123 47999998542 22233445789999999999999988
Q ss_pred HHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHH
Q 045633 168 RFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTI 203 (794)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 203 (794)
+.+...+-.. -+++..-|++.+.|-.-++..+
T Consensus 178 ~~a~~~~~~l----~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 178 LRARLRGFEL----PEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHcCCCC----CHHHHHHHHHhhcCCHHHHHHH
Confidence 7665433211 1455666777777666555433
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=98.34 E-value=7.1e-06 Score=85.24 Aligned_cols=159 Identities=14% Similarity=0.106 Sum_probs=91.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccc-cccCC-eEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDV-IENFD-KRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI 97 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~~~f~-~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 97 (794)
..+.+.++|++|+||||+|+.+++ .. ...|. .++-++.+...+.. ..+.++..+...... .-
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~~~~~~-------------~~ 96 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAH--ELLGPNYKEAVLELNASDDRGID-VVRNKIKMFAQKKVT-------------LP 96 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HHhcccCccceeeecccccccHH-HHHHHHHHHHhcccc-------------CC
Confidence 344567999999999999999887 33 22232 22333333322222 122222211111000 00
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhhc-ccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VARM-MESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.++.-++|+|+++.........+...+......+++|+++.... +... ......++++++++++....+...+...+.
T Consensus 97 ~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi 176 (319)
T PLN03025 97 PGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKV 176 (319)
T ss_pred CCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCC
Confidence 24567999999976655555556665554445677777775432 2111 122457899999999999998887765443
Q ss_pred CCChhHHHHHHHHHHhhcCCCch
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLPL 198 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~Pl 198 (794)
... .+....|++.++|-..
T Consensus 177 ~i~----~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 177 PYV----PEGLEAIIFTADGDMR 195 (319)
T ss_pred CCC----HHHHHHHHHHcCCCHH
Confidence 322 3446678888887663
No 65
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.5e-05 Score=81.45 Aligned_cols=178 Identities=15% Similarity=0.173 Sum_probs=109.1
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccC-Ce-EEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc--C
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENF-DK-RIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI--K 98 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~-~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~ 98 (794)
-+.|+|..|+|||+.++.+++ ++.... .. +++|++....+..+++..|+++++..+.......+....+.+.+ .
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc
Confidence 388999999999999999998 444332 22 78999999999999999999999855444455566677777766 4
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCC-CCcEE--EEEccchhhhh--------cccccceEEccCCChHhHHHHHH
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGL-CGSRI--LVTTRKETVAR--------MMESTDVISIKELSEHECWSLFK 167 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~-~gs~i--ivTtr~~~v~~--------~~~~~~~~~l~~l~~~ea~~Lf~ 167 (794)
++.+++|||+++......-+.+...+.... ..++| |..+.+-.... .++. ..+..+|-+.+|-.+++.
T Consensus 122 ~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~ 200 (366)
T COG1474 122 GKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILR 200 (366)
T ss_pred CCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHH
Confidence 579999999995422221122222222211 13443 33344332222 2222 347788889999999988
Q ss_pred HHhhCCCCC-CChhHHHHHHHHHHhhcC-CCchHHHHH
Q 045633 168 RFAFSGRSP-TDCEQLEEIGRKIVGKCK-GLPLAAKTI 203 (794)
Q Consensus 168 ~~~~~~~~~-~~~~~~~~~~~~i~~~~~-g~Plal~~~ 203 (794)
.++...-.. ...+..-+++..++..-+ ---.||.++
T Consensus 201 ~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 201 ERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 776533221 222333344444444444 444555444
No 66
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.5e-05 Score=87.13 Aligned_cols=169 Identities=16% Similarity=0.164 Sum_probs=96.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHh
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG-----SLPNLGELNSLLEYIHT 95 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~ 95 (794)
.+.+.++|+.|+||||+|+.+++ .+.... ++. ....+....-+.+...-.. .......++++.+.+..
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK--~LnC~~----~~~-~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~ 109 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAK--CLNCET----GVT-STPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDN 109 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HhCCCc----CCC-CCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHH
Confidence 47788999999999999998877 222110 100 0011111111111110000 00001122222222211
Q ss_pred ----HcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hh-hcccccceEEccCCChHhHHHHHHHH
Q 045633 96 ----SIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VA-RMMESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 96 ----~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~-~~~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
-..+++-++|+|+++.........+...+.....+.++|++|.+.. +. ........+++.+++.++..+.+.+.
T Consensus 110 ~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~I 189 (702)
T PRK14960 110 VPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAI 189 (702)
T ss_pred HhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHH
Confidence 1235677899999977666667777777766555677887776643 22 11234568999999999999998887
Q ss_pred hhCCCCCCChhHHHHHHHHHHhhcCCCchHH
Q 045633 170 AFSGRSPTDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
+...+.... .+....|++.++|-+..+
T Consensus 190 l~kEgI~id----~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 190 LEKEQIAAD----QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 755443332 344666888888876433
No 67
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.6e-05 Score=86.86 Aligned_cols=162 Identities=15% Similarity=0.143 Sum_probs=97.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccc---------------------cCCeEEEEEecCCCCHHHHHHHHHHHhcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIE---------------------NFDKRIWVCVSDPFDEFRIAKAIIEGLEG 78 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~---------------------~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 78 (794)
-.+.+.++|+.|+||||+|+.+++ .+.. .|..+++++.......
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk--~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gv------------- 101 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAK--CLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGV------------- 101 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCH-------------
Confidence 345677999999999999998886 2211 1222233322111111
Q ss_pred CCCCCCCHHHHHHHHHhH-cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhhc-ccccceEEcc
Q 045633 79 SLPNLGELNSLLEYIHTS-IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVARM-MESTDVISIK 155 (794)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~ 155 (794)
+++.++.+.+... ..+++-++|+|+++......++.+...+......+.+|++|.+ ..+... ......+++.
T Consensus 102 -----d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~ 176 (546)
T PRK14957 102 -----EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLK 176 (546)
T ss_pred -----HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeC
Confidence 1122222222211 2456779999999776666777788877765556666655544 333322 2345789999
Q ss_pred CCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCc-hHHHHHHh
Q 045633 156 ELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLP-LAAKTIGS 205 (794)
Q Consensus 156 ~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~ 205 (794)
+++.++....+.+.+...+... ..+....|++.++|-+ .|+..+-.
T Consensus 177 ~Ls~~eI~~~L~~il~~egi~~----e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 177 HISQADIKDQLKIILAKENINS----DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred CCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999888877654433222 1344566888889855 45555543
No 68
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=3.2e-07 Score=84.27 Aligned_cols=124 Identities=27% Similarity=0.298 Sum_probs=42.5
Q ss_pred CCCCccEEEEcccCcchhhhhhhhHHHhc-cCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccc-
Q 045633 377 DAKKLRSLILFDVTEDQSAASRGLQGLFD-QLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETC- 452 (794)
Q Consensus 377 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i- 452 (794)
++.+++.|++.++.. ..+.. +. .+..|++|++++|. +..++ .+..+++|+.|++++ +.++++.+
T Consensus 17 n~~~~~~L~L~~n~I------~~Ie~-L~~~l~~L~~L~Ls~N~----I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 17 NPVKLRELNLRGNQI------STIEN-LGATLDKLEVLDLSNNQ----ITKLE-GLPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp -------------------------S---TT-TT--EEE-TTS------S--T-T----TT--EEE--SS---S-CHHHH
T ss_pred ccccccccccccccc------ccccc-hhhhhcCCCEEECCCCC----Ccccc-CccChhhhhhcccCCCCCCccccchH
Confidence 444566666666621 11222 22 45566777777776 55553 355667777777766 66665444
Q ss_pred cCCCccceec--CcCCCccC--cccccccCCceeEecccccccCCCC----CCCCCCCCccCceEecc
Q 045633 453 CELLNLQTLD--CLSLKRLP--QGIGKLINLRHLIFDVFGVDYVPNG----FERLTGLRTLSGFTVAR 512 (794)
Q Consensus 453 ~~L~~L~~L~--~~~l~~lp--~~~~~L~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~~~~~~~ 512 (794)
..+++|++|+ .+++..+- ..+..+++|+.|++.+|.+...+.. +..+++|+.|+...+..
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence 2466666666 34444432 2356778888888877777765532 56777888887655443
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=4.4e-07 Score=98.17 Aligned_cols=99 Identities=31% Similarity=0.426 Sum_probs=82.8
Q ss_pred hccCCccceEEEcccCCCccccccCccccCcc-CCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccC
Q 045633 404 FDQLTCLRALKIEDFGLGDKTIEIPRGLENLI-HLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLIN 478 (794)
Q Consensus 404 ~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~-~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~ 478 (794)
...+..+..|++.++. +.++|...+.+. +|+.|++++ +..+|..++.+.+|+.|+ .+.+..+|...+.+++
T Consensus 112 ~~~~~~l~~L~l~~n~----i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~ 187 (394)
T COG4886 112 LLELTNLTSLDLDNNN----ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSN 187 (394)
T ss_pred hhcccceeEEecCCcc----cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhh
Confidence 4455789999999998 888888888885 999999998 888888888999999998 5678888887778889
Q ss_pred CceeEecccccccCCCCCCCCCCCCccC
Q 045633 479 LRHLIFDVFGVDYVPNGFERLTGLRTLS 506 (794)
Q Consensus 479 L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 506 (794)
|+.|+++.|.+..+|..++.+..|++|.
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELD 215 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhh
Confidence 9999999999999988776666677775
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.7e-05 Score=86.39 Aligned_cols=99 Identities=10% Similarity=0.099 Sum_probs=67.4
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVARM-MESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.++.-++|+|+++......+..+...+..-..++++|++|.+ ..+... ......+.+..++.++..+.+.+.+...+.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 456779999999877777777887777665556666655554 333322 234568999999999999988876644332
Q ss_pred CCChhHHHHHHHHHHhhcCCCchHH
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
... .+..+.|++.++|.|...
T Consensus 202 ~~d----~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 202 AHE----VNALRLLAQAAQGSMRDA 222 (700)
T ss_pred CCC----HHHHHHHHHHcCCCHHHH
Confidence 221 344567889999988533
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=1.9e-05 Score=85.58 Aligned_cols=98 Identities=18% Similarity=0.201 Sum_probs=67.4
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEc-cchhhhhcc-cccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTT-RKETVARMM-ESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~-~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.+++-++|+|+++......+..+...+....+.+.+|++| +...+...+ .....+++.+++.++..+.+.+.+...+.
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4567789999998766667888887777655566666544 444443322 33467899999999999999888765543
Q ss_pred CCChhHHHHHHHHHHhhcCCCchH
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLPLA 199 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~Pla 199 (794)
... .+....|++.++|-+.-
T Consensus 206 ~ie----~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 206 KTD----IEALRIIAYKSEGSARD 225 (507)
T ss_pred CCC----HHHHHHHHHHcCCCHHH
Confidence 322 34456688888887643
No 72
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.7e-05 Score=84.20 Aligned_cols=119 Identities=20% Similarity=0.213 Sum_probs=71.8
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVARM-MESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+++-++|+|+++.....+.+.+...+........+|++|.+ ..+... ......+++.+++.++....+.+.+...+..
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 56779999999655445566677666654444555545443 333222 2335688999999999999988877544332
Q ss_pred CChhHHHHHHHHHHhhcC-CCchHHHHHHhhhcC---CCCHHHHHHHHh
Q 045633 177 TDCEQLEEIGRKIVGKCK-GLPLAAKTIGSLLRF---KKTREEWQLILN 221 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~-g~Plal~~~~~~l~~---~~~~~~w~~~l~ 221 (794)
.. .+....|++.++ +.+.|+..+..+... .-+.+....++.
T Consensus 196 i~----~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~ 240 (472)
T PRK14962 196 ID----REALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALG 240 (472)
T ss_pred CC----HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 22 344566777664 556777766554321 124555555443
No 73
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.25 E-value=4.8e-07 Score=97.88 Aligned_cols=91 Identities=24% Similarity=0.312 Sum_probs=53.2
Q ss_pred eEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCC-ccceec--CcCCCccCcccccccCCceeEecc
Q 045633 412 ALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELL-NLQTLD--CLSLKRLPQGIGKLINLRHLIFDV 486 (794)
Q Consensus 412 ~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~-~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~ 486 (794)
.|++..+. +...+..+..+..+..|++.+ +.++|.....+. +|+.|+ .+.+..+|..++.+++|+.|+++.
T Consensus 97 ~l~~~~~~----~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNR----LRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccc----cccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence 35555554 322223344455666666665 666666666664 666666 455666655566666666666666
Q ss_pred cccccCCCCCCCCCCCCccC
Q 045633 487 FGVDYVPNGFERLTGLRTLS 506 (794)
Q Consensus 487 ~~l~~lp~~i~~l~~L~~L~ 506 (794)
|.+..+|...+.+++|+.|.
T Consensus 173 N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 173 NDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred chhhhhhhhhhhhhhhhhee
Confidence 66666666555556666555
No 74
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.5e-07 Score=94.80 Aligned_cols=233 Identities=19% Similarity=0.157 Sum_probs=137.8
Q ss_pred cCCCccceec--CcCCCccCc--ccccccCCceeEecccccccCC---CCCCCCCCCCccCceEeccccCCCCCCccCcc
Q 045633 453 CELLNLQTLD--CLSLKRLPQ--GIGKLINLRHLIFDVFGVDYVP---NGFERLTGLRTLSGFTVARVDGEYSSKACNLE 525 (794)
Q Consensus 453 ~~L~~L~~L~--~~~l~~lp~--~~~~L~~L~~L~l~~~~l~~lp---~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~ 525 (794)
+++++|+..- ...+...+. ....+++++.|+++.|-+..+- .-+..|++|+.|++....-
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl------------- 184 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL------------- 184 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc-------------
Confidence 3555666443 334444442 4667888888888877665432 2345666676665322110
Q ss_pred cccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCc
Q 045633 526 GLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNI 605 (794)
Q Consensus 526 ~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L 605 (794)
. ..... ..-..+.+|+.|.++.|+.+ ..++.-.+..+|+|
T Consensus 185 --------~---------~~~~s-----~~~~~l~~lK~L~l~~CGls------------------~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 185 --------S---------NFISS-----NTTLLLSHLKQLVLNSCGLS------------------WKDVQWILLTFPSL 224 (505)
T ss_pred --------c---------CCccc-----cchhhhhhhheEEeccCCCC------------------HHHHHHHHHhCCcH
Confidence 0 00000 00114578899999999876 34555566678999
Q ss_pred cEEEEeecCCCccCCCCchhccccCccEEeecCCCCCC--cCCCCCCCCCcceeeecccccceEeCcccccCcccCCCcc
Q 045633 606 ESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCE--IMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHI 683 (794)
Q Consensus 606 ~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~--~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l 683 (794)
+.|.+.+|...... .....-+..|++|+|++|..+. .++..+.||.|..|+++.|. +..+.. ...++++
T Consensus 225 ~~L~L~~N~~~~~~--~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~--~d~~s~~---- 295 (505)
T KOG3207|consen 225 EVLYLEANEIILIK--ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAE--PDVESLD---- 295 (505)
T ss_pred HHhhhhccccccee--cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcC--CCccchh----
Confidence 99999888533221 1223357889999999996554 33558899999999999754 222211 1111111
Q ss_pred ccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCC-----cCccCCCCccEEEeccC
Q 045633 684 HGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLP-----DQLLRSTTLESLEIGEA 757 (794)
Q Consensus 684 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip-----~~~~~l~~L~~L~l~~~ 757 (794)
....||+|++|++.. +++.+|... +.+..+++|+.|.+-.++ +..-. ..+...++|..|+=.+|
T Consensus 296 -------kt~~f~kL~~L~i~~-N~I~~w~sl-~~l~~l~nlk~l~~~~n~-ln~e~~~a~~~VIAr~~~l~~LN~~di 364 (505)
T KOG3207|consen 296 -------KTHTFPKLEYLNISE-NNIRDWRSL-NHLRTLENLKHLRITLNY-LNKETDTAKLLVIARISQLVKLNDVDI 364 (505)
T ss_pred -------hhcccccceeeeccc-Ccccccccc-chhhccchhhhhhccccc-ccccccceeEEeeeehhhhhhhccccc
Confidence 146899999999987 456666542 235578889999886663 32211 12334556665544444
No 75
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.25 E-value=1e-05 Score=79.87 Aligned_cols=153 Identities=18% Similarity=0.123 Sum_probs=87.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
..+.+.|+|..|+|||+||+.+++. ....-..+++++..... .. + .. ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~--~~~~~~~~~~i~~~~~~------~~----~------------------~~-~~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD--ASYGGRNARYLDAASPL------LA----F------------------DF-DP 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEEehHHhH------HH----H------------------hh-cc
Confidence 3457889999999999999999873 21221245566553311 00 0 01 12
Q ss_pred ceEEEEEeCCCCCCccChhhhHhhccCC-CCCc-EEEEEccchhhhh--------cccccceEEccCCChHhHHHHHHHH
Q 045633 100 KKFFLILDDVWTDDHSKWEPFHNCLMNG-LCGS-RILVTTRKETVAR--------MMESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtr~~~v~~--------~~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
..-++|+||++.........+...+... ..+. .+|+|++...... .+.....++++++++++-..++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 2347889999543333333344443321 1233 4667766432111 1222468899999998877777665
Q ss_pred hhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhh
Q 045633 170 AFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLL 207 (794)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 207 (794)
+...+... -++..+.+++...|.+..+..+-..+
T Consensus 170 ~~~~~v~l----~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERGLQL----ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 43322222 13456667778888888776555444
No 76
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.23 E-value=2.3e-06 Score=87.37 Aligned_cols=87 Identities=18% Similarity=0.147 Sum_probs=58.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC--CHHHHHHHHHHHhcCCCCCCCCH------HHHHHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF--DEFRIAKAIIEGLEGSLPNLGEL------NSLLEYI 93 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~l 93 (794)
+..+|+|++|+||||||++++++... .+|+.++||.+.+.. .+.++++.+...+-....+.... ....+..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 45779999999999999999985433 379999999988776 77778777764322221111111 1111112
Q ss_pred HhH-cCCceEEEEEeCC
Q 045633 94 HTS-IKGKKFFLILDDV 109 (794)
Q Consensus 94 ~~~-l~~~~~LlvlDdv 109 (794)
+.. ..+++++|++|++
T Consensus 249 e~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 249 KRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHcCCCEEEEEECh
Confidence 221 2679999999999
No 77
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.23 E-value=3.5e-05 Score=80.71 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=89.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccc-cCCeEEEEEe--cCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIE-NFDKRIWVCV--SDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI 97 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~v~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 97 (794)
.+.+.|+|+.|+||||+|+.+++. ... .+. ..++.+ +.......+ ...+..+....+ ..
T Consensus 38 ~~~~ll~G~~G~GKt~~~~~l~~~--l~~~~~~-~~~i~~~~~~~~~~~~~-~~~i~~~~~~~~--------------~~ 99 (319)
T PRK00440 38 MPHLLFAGPPGTGKTTAALALARE--LYGEDWR-ENFLELNASDERGIDVI-RNKIKEFARTAP--------------VG 99 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HcCCccc-cceEEeccccccchHHH-HHHHHHHHhcCC--------------CC
Confidence 445789999999999999999873 221 121 122222 222221111 111111111100 00
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhh-cccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MMESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
...+-++|+|+++.........+...+....+.+++|+++.... +.. .......+++.+++.++....+...+...+.
T Consensus 100 ~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~ 179 (319)
T PRK00440 100 GAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI 179 (319)
T ss_pred CCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC
Confidence 13466899999855443444556666555455677777765321 211 1122447899999999999998887765443
Q ss_pred CCChhHHHHHHHHHHhhcCCCchHH
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
.-. .+.+..+++.++|.+..+
T Consensus 180 ~i~----~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 180 EIT----DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCC----HHHHHHHHHHcCCCHHHH
Confidence 222 345667888899887653
No 78
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.5e-05 Score=82.94 Aligned_cols=166 Identities=13% Similarity=0.097 Sum_probs=94.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCC--------CCCCCCHHHHHHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS--------LPNLGELNSLLEYI 93 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~--------~~~~~~~~~~~~~l 93 (794)
+.+.++|+.|+||||+|+.+++. +...-.. -...+..... -..+....... ....+++.++.+.+
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~-~~~pCg~C~s----C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l 113 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKR--LNCENPI-GNEPCNECTS----CLEITKGISSDVLEIDAASNRGIENIRELRDNV 113 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh--cCccccc-CccccCCCcH----HHHHHccCCccceeechhhcccHHHHHHHHHHH
Confidence 56789999999999999999873 3221100 0000111111 11111111100 00111222222222
Q ss_pred HhH-cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhhc-ccccceEEccCCChHhHHHHHHHHh
Q 045633 94 HTS-IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVARM-MESTDVISIKELSEHECWSLFKRFA 170 (794)
Q Consensus 94 ~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~ 170 (794)
... ..++.-++|+|+++......+..+...+........+|.+|.+ ..+... ......|.+.+++.++..+.+.+.+
T Consensus 114 ~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 114 KFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred HhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHH
Confidence 221 2456779999999877777788887777654445555555554 333222 2335679999999999999888876
Q ss_pred hCCCCCCChhHHHHHHHHHHhhcCCCch
Q 045633 171 FSGRSPTDCEQLEEIGRKIVGKCKGLPL 198 (794)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 198 (794)
...+... ..+....|++.++|-+.
T Consensus 194 ~~Egi~~----e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 194 KIENVQY----DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHcCCCC----CHHHHHHHHHHcCChHH
Confidence 5443322 24456778888988874
No 79
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.2e-08 Score=91.96 Aligned_cols=166 Identities=19% Similarity=0.222 Sum_probs=113.7
Q ss_pred hhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCc
Q 045633 552 KNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKL 631 (794)
Q Consensus 552 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L 631 (794)
....++.|..|+.|++.++... +.+...+....+|+.|+|++|.+.+.....-.+.+++.|
T Consensus 202 l~~iLs~C~kLk~lSlEg~~Ld-------------------D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 202 LHGILSQCSKLKNLSLEGLRLD-------------------DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred HHHHHHHHHhhhhccccccccC-------------------cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 3345667788888888877653 455667777888999999988876643334456688999
Q ss_pred cEEeecCCCCCCcC-C----CCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeecccc
Q 045633 632 KRLDLAFCPRCEIM-P----PLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIM 706 (794)
Q Consensus 632 ~~L~L~~~~~l~~l-~----~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 706 (794)
..|+|+.|...... . .++ ++|+.|++++|..--... +...-...+|+|..|+|+++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~s-----------------h~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKS-----------------HLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhh-----------------HHHHHHHhCCceeeeccccc
Confidence 99999998543321 1 133 788889998874221110 00111457899999999998
Q ss_pred ccccccccCCCCccCCCcccEEeeccCccCcCCCc---CccCCCCccEEEeccCcc
Q 045633 707 LQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPD---QLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 707 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~---~~~~l~~L~~L~l~~~~~ 759 (794)
..++.-.+ ..+..|+.|++|+++.|-.+ +|+ .+...|+|.+|++.||-.
T Consensus 324 v~l~~~~~--~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 324 VMLKNDCF--QEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred cccCchHH--HHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 87776321 22558999999999999544 444 346789999999999843
No 80
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.20 E-value=1.7e-05 Score=89.97 Aligned_cols=149 Identities=22% Similarity=0.311 Sum_probs=84.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc--
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI-- 97 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-- 97 (794)
....+.|+|++|+||||+|+.+++ .....|. .++... .... +..+......+.+
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~-~~i~------------------dir~~i~~a~~~l~~ 106 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVL-AGVK------------------DLRAEVDRAKERLER 106 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhhh-hhhH------------------HHHHHHHHHHHHhhh
Confidence 455678999999999999999987 3444431 122110 0010 1111122221111
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEE--ccchh--hhh-cccccceEEccCCChHhHHHHHHHHhhC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVT--TRKET--VAR-MMESTDVISIKELSEHECWSLFKRFAFS 172 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tr~~~--v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~ 172 (794)
.+++.++|+||++.-...+.+.+...+.. |..++|+ |.+.. +.. ......++.+++++.++...++.+.+..
T Consensus 107 ~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~---g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~ 183 (725)
T PRK13341 107 HGKRTILFIDEVHRFNKAQQDALLPWVEN---GTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQD 183 (725)
T ss_pred cCCceEEEEeChhhCCHHHHHHHHHHhcC---ceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHH
Confidence 24678999999976555555666554433 4545553 33321 111 1223457999999999999999876641
Q ss_pred ------CCCCCChhHHHHHHHHHHhhcCCCch
Q 045633 173 ------GRSPTDCEQLEEIGRKIVGKCKGLPL 198 (794)
Q Consensus 173 ------~~~~~~~~~~~~~~~~i~~~~~g~Pl 198 (794)
.... .-.++....|++.+.|...
T Consensus 184 ~~~~~g~~~v---~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 184 KERGYGDRKV---DLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HHhhcCCccc---CCCHHHHHHHHHhCCCCHH
Confidence 1111 1123455667777877643
No 81
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.19 E-value=6.9e-05 Score=79.78 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=65.7
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhhc-ccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VARM-MESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+++-++|+|+++.........+...+......+.+|++|.+.. +... ......+++.+++.++..+++...+...+..
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4566889999965544556667777655445667777765543 2221 2234578889999999999998877554432
Q ss_pred CChhHHHHHHHHHHhhcCCCchHHHH
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPLAAKT 202 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Plal~~ 202 (794)
.. .+.+..+++.++|.|..+..
T Consensus 196 i~----~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 196 IE----DEALELIARAADGSLRDALS 217 (355)
T ss_pred CC----HHHHHHHHHHcCCChHHHHH
Confidence 21 35567788899998865543
No 82
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.18 E-value=2.9e-07 Score=87.85 Aligned_cols=53 Identities=23% Similarity=0.245 Sum_probs=34.3
Q ss_pred CCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCce
Q 045633 455 LLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGF 508 (794)
Q Consensus 455 L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~ 508 (794)
-+.|+++| .+.++.+-.++.-+++++.|+++.|++..+.. +..|.+|+.|++.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS 337 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLS 337 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecc
Confidence 34566666 45566666666667777777777777766643 6667777777643
No 83
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.9e-05 Score=82.50 Aligned_cols=154 Identities=20% Similarity=0.171 Sum_probs=95.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccc---------------------cCCeEEEEEecCCCCHHHHHHHHHHHhcCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIE---------------------NFDKRIWVCVSDPFDEFRIAKAIIEGLEGS 79 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~---------------------~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~ 79 (794)
.+.+.++|+.|+||||+|+.++. .+.. .+..++.++.+...+..++ +++.+
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk--~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddI-R~Iie----- 106 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISL--CLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDI-KVILE----- 106 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHH--HHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHH-HHHHH-----
Confidence 45788999999999999988875 1111 1122344443322222221 11211
Q ss_pred CCCCCCHHHHHHHHHhH-cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhhc-ccccceEEccC
Q 045633 80 LPNLGELNSLLEYIHTS-IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVARM-MESTDVISIKE 156 (794)
Q Consensus 80 ~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~ 156 (794)
..... +.++.-++|+|+++......++.+...+....+.+++|++|.+ +.+... ......+++.+
T Consensus 107 ------------~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~ 174 (491)
T PRK14964 107 ------------NSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQK 174 (491)
T ss_pred ------------HHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeeccc
Confidence 11111 2356778999999766666677788777766667777766654 333322 23456889999
Q ss_pred CChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCch
Q 045633 157 LSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPL 198 (794)
Q Consensus 157 l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 198 (794)
++.++..+.+.+.+...+.... .+.+..|++.++|-+.
T Consensus 175 l~~~el~~~L~~ia~~Egi~i~----~eAL~lIa~~s~GslR 212 (491)
T PRK14964 175 IPTDKLVEHLVDIAKKENIEHD----EESLKLIAENSSGSMR 212 (491)
T ss_pred ccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 9999999999887765544332 3446678888888775
No 84
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=4.1e-05 Score=80.75 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=62.9
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+++-++|+|+++.........+...+....++..+|++|.+. .+... ......+.+.+++.++..+.+.+... .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~- 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V- 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C-
Confidence 456688889997776666666777776655566666666654 33322 23356899999999999988875321 1
Q ss_pred CChhHHHHHHHHHHhhcCCCchHH
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
. .+.+..+++.++|.|...
T Consensus 192 ~-----~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 192 D-----PETARRAARASQGHIGRA 210 (394)
T ss_pred C-----HHHHHHHHHHcCCCHHHH
Confidence 1 234677889999998543
No 85
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=3.8e-05 Score=84.85 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=65.0
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhhc-ccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VARM-MESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+++-++|+|+++.........+...+......+++|++|.+.. +... .+....+.+.+++.++....+.+.+...+..
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5667899999976555556667777765445667777776532 2211 2334567888999999999998877654432
Q ss_pred CChhHHHHHHHHHHhhcCCCchHH
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
.. .+....|++.++|-+.-+
T Consensus 198 id----~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 198 YE----PPALQLLGRAAAGSMRDA 217 (709)
T ss_pred cC----HHHHHHHHHHhCCCHHHH
Confidence 22 345677888888887443
No 86
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2.7e-05 Score=86.43 Aligned_cols=172 Identities=14% Similarity=0.219 Sum_probs=97.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHH-------hcCC-CCCCCCHHHHHHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEG-------LEGS-LPNLGELNSLLEY 92 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~-------l~~~-~~~~~~~~~~~~~ 92 (794)
.+.+.++|+.|+||||+|+.+++. +..... + ..........-+.|... +... ....+++.++.+.
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~~----~-~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~ 110 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKG--LNCETG----I-TATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDN 110 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh--hhhccC----C-CCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHH
Confidence 355679999999999999988873 222100 0 00111111222222111 0000 0011112222222
Q ss_pred HHhH-cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhh-cccccceEEccCCChHhHHHHHHHH
Q 045633 93 IHTS-IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVAR-MMESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 93 l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
+... ..+++-++|+|+++.........+...+.......++|++|.+. .+.. .......+.+.+++.++..+.+.+.
T Consensus 111 ~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~i 190 (647)
T PRK07994 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHI 190 (647)
T ss_pred HHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHH
Confidence 2111 24677799999998777777888877777655566666666553 3322 2234578999999999999998876
Q ss_pred hhCCCCCCChhHHHHHHHHHHhhcCCCch-HHHHH
Q 045633 170 AFSGRSPTDCEQLEEIGRKIVGKCKGLPL-AAKTI 203 (794)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 203 (794)
+...+.... .+....|++.++|.+. |+.++
T Consensus 191 l~~e~i~~e----~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 191 LQAEQIPFE----PRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 543332221 3445678889999775 44444
No 87
>PRK05642 DNA replication initiation factor; Validated
Probab=98.15 E-value=2.2e-05 Score=77.25 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=88.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
..+.|||..|+|||.||+++++ +....-..++|++..+ +... .. .+.+.+++-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhCC
Confidence 5688999999999999999887 3333234577876532 1110 01 1222222222
Q ss_pred EEEEEeCCCCCC-ccChhh-hHhhccC-CCCCcEEEEEccchh--h-------hhcccccceEEccCCChHhHHHHHHHH
Q 045633 102 FFLILDDVWTDD-HSKWEP-FHNCLMN-GLCGSRILVTTRKET--V-------ARMMESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 102 ~LlvlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~~--v-------~~~~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
++|+||+.... ...|.. +...+.. ...|.++|+|++... . ...+....++++++++.++-.+++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 67889995321 123332 3333322 123567899887532 1 111233467899999999999999866
Q ss_pred hhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHH
Q 045633 170 AFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIG 204 (794)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 204 (794)
+...+.... +++..-|++++.|-.-.+..+-
T Consensus 179 a~~~~~~l~----~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 179 ASRRGLHLT----DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHcCCCCC----HHHHHHHHHhcCCCHHHHHHHH
Confidence 654322111 4556667777777665554433
No 88
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=4.6e-05 Score=83.37 Aligned_cols=99 Identities=9% Similarity=0.089 Sum_probs=65.0
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.++.-++|+|+++......+..+...+....+.+++|++|.+. .+... ......+++++++.++....+.+.+...+.
T Consensus 117 ~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi 196 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV 196 (509)
T ss_pred cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 3566789999997766667777777777655567777666543 33221 233467889999999988877766554433
Q ss_pred CCChhHHHHHHHHHHhhcCCCchHH
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
... .+....|++.++|-+..+
T Consensus 197 ~~~----~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 197 EFE----NAALDLLARAANGSVRDA 217 (509)
T ss_pred CCC----HHHHHHHHHHcCCcHHHH
Confidence 222 334566788888877433
No 89
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=2.9e-05 Score=83.86 Aligned_cols=167 Identities=20% Similarity=0.120 Sum_probs=100.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCcccccc--CCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIEN--FDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~--f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
...+.|+|..|+|||.|++++.+ .+... -..+++++. .++...+...+.... .....+++.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhc
Confidence 34588999999999999999987 33322 124556644 356666666554311 12233333333
Q ss_pred CceEEEEEeCCCCCCc--cChhhhHhhccCC-CCCcEEEEEccch---------hhhhcccccceEEccCCChHhHHHHH
Q 045633 99 GKKFFLILDDVWTDDH--SKWEPFHNCLMNG-LCGSRILVTTRKE---------TVARMMESTDVISIKELSEHECWSLF 166 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~--~~~~~l~~~l~~~-~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~l~~~ea~~Lf 166 (794)
+.-+||+||+..... ...+.+...+... ..|..||+|+... .+...+...-++.+++++.++-.+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 344788999954321 1122233222221 2344688887642 12222344568889999999999999
Q ss_pred HHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHh
Q 045633 167 KRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGS 205 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 205 (794)
.+.+...+... .--++++.-|++.++|.|..+.-+..
T Consensus 285 ~~~~~~~gl~~--~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 285 KKEIKNQNIKQ--EVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHhcCCCC--CCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 98876533110 12256678899999999988875543
No 90
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.12 E-value=6.3e-05 Score=74.34 Aligned_cols=190 Identities=19% Similarity=0.148 Sum_probs=113.4
Q ss_pred HHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccC------CeEEEEEecCCCCHHHHHHHHHHHhc
Q 045633 4 NTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF------DKRIWVCVSDPFDEFRIAKAIIEGLE 77 (794)
Q Consensus 4 ~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f------~~~~~v~~~~~~~~~~~~~~i~~~l~ 77 (794)
+++.+.+..+ ...+.+-+.|+|..|+|||++++++.... ...+ -.|+.|.....++...++..|+.+++
T Consensus 47 ~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~h--p~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 47 DRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLH--PPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHC--CCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 3444444443 45677789999999999999999888631 1112 14778888899999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHhHcC-CceEEEEEeCCCCC------CccChhhhHhhccCCCCCcEEEEEccchhhhhcc----
Q 045633 78 GSLPNLGELNSLLEYIHTSIK-GKKFFLILDDVWTD------DHSKWEPFHNCLMNGLCGSRILVTTRKETVARMM---- 146 (794)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~---- 146 (794)
...............+...++ -+--+||+|++.+. .+.++-.....+.+...=+-|.|-|++..-+-..
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 876555555554444444443 34568899998541 1122222333444443445567777654322111
Q ss_pred -cccceEEccCCChHhH-HHHHHHHhh--CCCCCCChhHHHHHHHHHHhhcCCCchH
Q 045633 147 -ESTDVISIKELSEHEC-WSLFKRFAF--SGRSPTDCEQLEEIGRKIVGKCKGLPLA 199 (794)
Q Consensus 147 -~~~~~~~l~~l~~~ea-~~Lf~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~Pla 199 (794)
.....+.++....++- ..|+..... .-..+. .-...+++..|...++|+.=-
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIGE 257 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchHH
Confidence 1234566666555443 444433221 111111 123467889999999998633
No 91
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=6.5e-05 Score=82.16 Aligned_cols=175 Identities=15% Similarity=0.130 Sum_probs=95.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCC-----CCCCCCHHH---HHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-----LPNLGELNS---LLE 91 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~---~~~ 91 (794)
-.+.+.++|+.|+||||+|+.+++ .+.+. -|... ...+.....+.+....... ......+++ +..
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk--~L~C~----~~~~~-~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~ 109 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAK--AINCL----NPKDG-DCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIID 109 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HhcCC----CCCCC-CCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHH
Confidence 346788999999999999998887 22211 01110 1111112222221111000 000011222 222
Q ss_pred HHHhH-cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhh-cccccceEEccCCChHhHHHHHHH
Q 045633 92 YIHTS-IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVAR-MMESTDVISIKELSEHECWSLFKR 168 (794)
Q Consensus 92 ~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~~~~~~~~l~~l~~~ea~~Lf~~ 168 (794)
.+... ..+++-++|+|+++......+..+...+........+|++|... .+.. .......+++.+++.++....+..
T Consensus 110 ~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~ 189 (605)
T PRK05896 110 NINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKS 189 (605)
T ss_pred HHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHH
Confidence 22111 12344569999997665566777777766554556666555433 3322 223356889999999999988887
Q ss_pred HhhCCCCCCChhHHHHHHHHHHhhcCCCc-hHHHHHHh
Q 045633 169 FAFSGRSPTDCEQLEEIGRKIVGKCKGLP-LAAKTIGS 205 (794)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~ 205 (794)
.+...+.... .+.+..+++.++|-+ .|+..+-.
T Consensus 190 il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 190 IAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6654332221 344667888898855 45555444
No 92
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=7.2e-05 Score=77.77 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=97.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCcccccc----CCeEEEEEecCCCCHHHHHHHHHHHhc-------CCC-C------
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIEN----FDKRIWVCVSDPFDEFRIAKAIIEGLE-------GSL-P------ 81 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~~v~~~~~~~~~~~~~~i~~~l~-------~~~-~------ 81 (794)
-.+.+.|+|+.|+||||+|+.+++ .+... +... ............+.+...-. ... .
T Consensus 44 l~ha~L~~G~~G~GKttlA~~lA~--~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~ 118 (351)
T PRK09112 44 LHHALLFEGPEGIGKATLAFHLAN--HILSHPDPAEAPE---TLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFK 118 (351)
T ss_pred CCeeEeeECCCCCCHHHHHHHHHH--HHcCCCccccCcc---ccCCCCCCCHHHHHHHcCCCCCEEEeeccccccccccc
Confidence 456788999999999999988887 33221 1111 01111112223333332211 000 0
Q ss_pred CCCCHHHHHHHHHhHc-----CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEc-cchhhhhc-ccccceEEc
Q 045633 82 NLGELNSLLEYIHTSI-----KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTT-RKETVARM-MESTDVISI 154 (794)
Q Consensus 82 ~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~-~~~~~~~~l 154 (794)
..-.++++. .+.+.+ .+++-++|+|+++..+......+...+.....+..+|++| +...+... ......+.+
T Consensus 119 ~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l 197 (351)
T PRK09112 119 TAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISL 197 (351)
T ss_pred ccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEe
Confidence 011233332 333333 3567799999998777777777777776544455544444 43333221 233468999
Q ss_pred cCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHH
Q 045633 155 KELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKT 202 (794)
Q Consensus 155 ~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 202 (794)
.+++.++..+++.+...... ...+.+..+++.++|.|.....
T Consensus 198 ~pl~~~~~~~~L~~~~~~~~------~~~~~~~~i~~~s~G~pr~Al~ 239 (351)
T PRK09112 198 KPLDDDELKKALSHLGSSQG------SDGEITEALLQRSKGSVRKALL 239 (351)
T ss_pred cCCCHHHHHHHHHHhhcccC------CCHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999987432111 1133466789999999975543
No 93
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=9.2e-05 Score=82.11 Aligned_cols=98 Identities=10% Similarity=0.170 Sum_probs=66.6
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhh-cccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVAR-MMESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
++.-++|+|+++......+..+...+.......++|++|.+ ..+.. .......+++++++.++..+.+.+.+...+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999877777777787777665556666666544 33322 22345789999999999999998776554433
Q ss_pred CChhHHHHHHHHHHhhcCCCchHH
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
.. .+....|++.++|-+..+
T Consensus 203 ie----~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 203 AE----PQALRLLARAARGSMRDA 222 (618)
T ss_pred CC----HHHHHHHHHHcCCCHHHH
Confidence 22 344667888888876443
No 94
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.08 E-value=3.7e-05 Score=74.70 Aligned_cols=160 Identities=14% Similarity=0.198 Sum_probs=90.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccC--CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI 97 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 97 (794)
....+.|||..|+|||.|.+++++ ++.... ..++|+++ .+....+...+... .. ..+++.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~~-----~~----~~~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLSA------EEFIREFADALRDG-----EI----EEFKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEEH------HHHHHHHHHHHHTT-----SH----HHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeecH------HHHHHHHHHHHHcc-----cc----hhhhhhh
Confidence 345578999999999999999998 444332 24667754 35555665555431 12 2333444
Q ss_pred CCceEEEEEeCCCCCCcc-Chh-hhHhhccCC-CCCcEEEEEccchh---------hhhcccccceEEccCCChHhHHHH
Q 045633 98 KGKKFFLILDDVWTDDHS-KWE-PFHNCLMNG-LCGSRILVTTRKET---------VARMMESTDVISIKELSEHECWSL 165 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~-~~~-~l~~~l~~~-~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~l~~~ea~~L 165 (794)
+ .-=+|++||++..... .|. .+...+... ..|.+||+|++... +...+...-++++++++.++..++
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 4 3447889999542211 122 222222221 23668999996431 222334456899999999999999
Q ss_pred HHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHH
Q 045633 166 FKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 166 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
+.+.+...+... -++++.-|++.+.+..-.|.
T Consensus 175 l~~~a~~~~~~l----~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 175 LQKKAKERGIEL----PEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHTT--S-----HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHhCCCC----cHHHHHHHHHhhcCCHHHHH
Confidence 998886544432 24455556666665554444
No 95
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=7.2e-05 Score=80.05 Aligned_cols=174 Identities=16% Similarity=0.145 Sum_probs=94.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCcccccc--CCeEEEEE-ecCCCCHHHHHHHHHHHhcCC-----CCCCCCHHHHHHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIEN--FDKRIWVC-VSDPFDEFRIAKAIIEGLEGS-----LPNLGELNSLLEY 92 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~--f~~~~~v~-~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~ 92 (794)
.+.+.++|+.|+||||+|+.+++ .+... +...-|.. ...+......-+.+....... ......++++.+.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~--~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l 115 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAK--AVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLL 115 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHH--HhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHH
Confidence 45588999999999999988876 33221 10000100 011111111112221111000 0011112333222
Q ss_pred HHhH----cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhhc-ccccceEEccCCChHhHHHHH
Q 045633 93 IHTS----IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVARM-MESTDVISIKELSEHECWSLF 166 (794)
Q Consensus 93 l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~l~~~ea~~Lf 166 (794)
.... +.+++-++|+|+++......+..+...+....+.+.+|++|.. ..+... ......+++.+++.++..+.+
T Consensus 116 ~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l 195 (397)
T PRK14955 116 RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQL 195 (397)
T ss_pred HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 1111 2345678899999665555677787777766566776665543 333322 122457889999999998888
Q ss_pred HHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHH
Q 045633 167 KRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
...+...+... ..+.+..+++.++|.+--+
T Consensus 196 ~~~~~~~g~~i----~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 196 QGICEAEGISV----DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 77664433222 2455777899999977533
No 96
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=9.8e-05 Score=81.45 Aligned_cols=104 Identities=12% Similarity=0.101 Sum_probs=67.5
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.+++-++|+|+++.........+...+......+.+|++|.+. .+... ......+++++++.++..+.+.+.+...+.
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi 196 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI 196 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 3567799999997666556677777776655566666666543 22211 223467899999999999888776644332
Q ss_pred CCChhHHHHHHHHHHhhcCCCch-HHHHHHh
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLPL-AAKTIGS 205 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 205 (794)
.. ..+....|++.++|.+. |+..+-.
T Consensus 197 ~~----~~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 197 PF----DATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred CC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22 13445678888999774 4444433
No 97
>PRK06620 hypothetical protein; Validated
Probab=98.06 E-value=4.1e-05 Score=73.89 Aligned_cols=135 Identities=12% Similarity=-0.002 Sum_probs=76.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
+.+.|||+.|+|||+|++.+++.. . ..++.... .. ++ .++ ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~-----~~~~~~~~--~~---------------------~~-------~~~-~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--N-----AYIIKDIF--FN---------------------EE-------ILE-KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--C-----CEEcchhh--hc---------------------hh-------HHh-cC
Confidence 568899999999999999887732 1 12221000 00 00 011 23
Q ss_pred EEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-------hhhcccccceEEccCCChHhHHHHHHHHhhCCC
Q 045633 102 FFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-------VARMMESTDVISIKELSEHECWSLFKRFAFSGR 174 (794)
Q Consensus 102 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-------v~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~ 174 (794)
-++++||++..+...+..+...+.. .|..||+|++... +...+...-++++++++.++-.+++.+.+...+
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e--~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINE--KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHh--cCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 4688999953221222233332322 3568999988432 122233345899999999998888887765322
Q ss_pred CCCChhHHHHHHHHHHhhcCCCchHH
Q 045633 175 SPTDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 175 ~~~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
-.. -+++..-|++++.|---.+
T Consensus 165 l~l----~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 165 VTI----SRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CCC----CHHHHHHHHHHccCCHHHH
Confidence 211 1445566666666554433
No 98
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=7.2e-05 Score=82.27 Aligned_cols=176 Identities=14% Similarity=0.191 Sum_probs=98.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHH---HHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL-----PNLGELNSL---LEY 92 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~---~~~ 92 (794)
.+.+.++|+.|+||||+|+.+++. +...... ....++....-+.+........ .....++++ .+.
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~--L~C~~~~-----~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~ 110 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKA--LNCETAP-----TGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEA 110 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--ccccCCC-----CCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHH
Confidence 467889999999999999988873 2211000 0001111111122211110000 000112221 111
Q ss_pred HHh-HcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhhc-ccccceEEccCCChHhHHHHHHHH
Q 045633 93 IHT-SIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVARM-MESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 93 l~~-~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
+.. -..+++-++|+|+++.........+...+........+|++|.+ ..+... ......+++.+++.++..+.+...
T Consensus 111 ~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~i 190 (624)
T PRK14959 111 IGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKV 190 (624)
T ss_pred HHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHH
Confidence 111 12356779999999776666677787777654445666666655 333322 233457899999999999988876
Q ss_pred hhCCCCCCChhHHHHHHHHHHhhcCCCc-hHHHHHHhhh
Q 045633 170 AFSGRSPTDCEQLEEIGRKIVGKCKGLP-LAAKTIGSLL 207 (794)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l 207 (794)
+...+.... .+.+..|++.++|.+ .|+..+...+
T Consensus 191 l~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 191 LGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 654433221 345677888888854 6777776544
No 99
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.05 E-value=8.2e-06 Score=83.94 Aligned_cols=87 Identities=16% Similarity=0.092 Sum_probs=59.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC--CCHHHHHHHHHHHhcCCCCCCCCH------HHHHHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP--FDEFRIAKAIIEGLEGSLPNLGEL------NSLLEYI 93 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~l 93 (794)
+.++|+|++|+|||||++.+++... ..+|+..+||.+.+. .++.++++.+...+-....+.... ..+.+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 5688999999999999999998432 236998899998865 788899998855443222221111 1111222
Q ss_pred HhH-cCCceEEEEEeCC
Q 045633 94 HTS-IKGKKFFLILDDV 109 (794)
Q Consensus 94 ~~~-l~~~~~LlvlDdv 109 (794)
... -++++++|++|++
T Consensus 248 e~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHHcCCCeEEEEECh
Confidence 222 2689999999999
No 100
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.04 E-value=2.5e-07 Score=90.72 Aligned_cols=207 Identities=18% Similarity=0.146 Sum_probs=91.6
Q ss_pred HhccCCccceEEEcccCCCccc-cccCccccCccCCcEEeccC------CCccCccccCCCccceecCcCCCccCccccc
Q 045633 403 LFDQLTCLRALKIEDFGLGDKT-IEIPRGLENLIHLRYLQLSS------VEELPETCCELLNLQTLDCLSLKRLPQGIGK 475 (794)
Q Consensus 403 ~~~~~~~L~~L~l~~~~~~~~~-~~lp~~i~~l~~L~~L~L~~------~~~lp~~i~~L~~L~~L~~~~l~~lp~~~~~ 475 (794)
....+..++.|+|++|.++.-- ..+-+.+.+.++|+.-++|+ ..++|+.+ ..+-+.+..
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L--------------~~l~~aL~~ 90 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEAL--------------KMLSKALLG 90 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHH--------------HHHHHHHhc
Confidence 3556677777788877753211 12334455566777777776 22233221 111122334
Q ss_pred ccCCceeEeccccccc--CC---CCCCCCCCCCccCceEeccccCCCCCCccCc------ccccccccCCCeeEEccccC
Q 045633 476 LINLRHLIFDVFGVDY--VP---NGFERLTGLRTLSGFTVARVDGEYSSKACNL------EGLGNLNHLRGFLRICGLGN 544 (794)
Q Consensus 476 L~~L~~L~l~~~~l~~--lp---~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l------~~l~~L~~L~~~l~~~~~~~ 544 (794)
.++|++|+|+.|-+.. ++ .-+..+++|++|.+.+|+--..........+ +..++=+.|+ .+.+....-
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr-v~i~~rNrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR-VFICGRNRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE-EEEeecccc
Confidence 4466666666554431 11 1244566666666544432100000000000 0011112233 222222111
Q ss_pred CCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccC--CCC
Q 045633 545 VTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLI--FSS 622 (794)
Q Consensus 545 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~p 622 (794)
...........++.++.|+.+.+..|++.... .......+..+++|+.|+|..|....-- ...
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG---------------~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEG---------------VTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCch---------------hHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 12222334444555666666666666544100 1223445566666666666665432210 001
Q ss_pred chhccccCccEEeecCC
Q 045633 623 NWTASLDKLKRLDLAFC 639 (794)
Q Consensus 623 ~~~~~l~~L~~L~L~~~ 639 (794)
..++.+++|+.|++++|
T Consensus 235 kaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDC 251 (382)
T ss_pred HHhcccchheeeccccc
Confidence 22334566666666666
No 101
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.04 E-value=0.00011 Score=82.72 Aligned_cols=114 Identities=11% Similarity=0.011 Sum_probs=66.2
Q ss_pred HHHHHHhHcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEE--Eccchhh-hhc-ccccceEEccCCChHhHHH
Q 045633 89 LLEYIHTSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILV--TTRKETV-ARM-MESTDVISIKELSEHECWS 164 (794)
Q Consensus 89 ~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v-~~~-~~~~~~~~l~~l~~~ea~~ 164 (794)
.+..+.+.++.+++.++-|+.|..+...|+.+...+....+...|++ ||++... ... ......+.+.+++.+|.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 45667777777888888777766665667776655555444444555 5664331 111 1223467889999999999
Q ss_pred HHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhh
Q 045633 165 LFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSL 206 (794)
Q Consensus 165 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 206 (794)
++.+.+....... . .++.+.|.++...-+.|+..++..
T Consensus 361 Il~~~a~~~~v~l-s---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 361 IVLNAAEKINVHL-A---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHcCCCC-C---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9988765322111 1 233444555544335555544433
No 102
>CHL00181 cbbX CbbX; Provisional
Probab=98.03 E-value=0.00011 Score=74.50 Aligned_cols=135 Identities=14% Similarity=0.133 Sum_probs=74.0
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccC-CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
.+.++|++|+||||+|+.+++.. ....+ ...-|+.++ .. .+.....+.. .......+.+. ..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~----~~----~l~~~~~g~~-----~~~~~~~l~~a---~g 123 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVT----RD----DLVGQYIGHT-----APKTKEVLKKA---MG 123 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEec----HH----HHHHHHhccc-----hHHHHHHHHHc---cC
Confidence 46799999999999999997621 11111 111233333 11 1222221111 11122223322 22
Q ss_pred EEEEEeCCCCC---------CccChhhhHhhccCCCCCcEEEEEccchhhhhcc--------cccceEEccCCChHhHHH
Q 045633 102 FFLILDDVWTD---------DHSKWEPFHNCLMNGLCGSRILVTTRKETVARMM--------ESTDVISIKELSEHECWS 164 (794)
Q Consensus 102 ~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--------~~~~~~~l~~l~~~ea~~ 164 (794)
-+|++|+++.. ..+..+.+...+.....+.+||+++....+...+ .....+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999542 1122334455555555566777777654332111 124579999999999999
Q ss_pred HHHHHhhCCC
Q 045633 165 LFKRFAFSGR 174 (794)
Q Consensus 165 Lf~~~~~~~~ 174 (794)
++...+....
T Consensus 204 I~~~~l~~~~ 213 (287)
T CHL00181 204 IAKIMLEEQQ 213 (287)
T ss_pred HHHHHHHHhc
Confidence 9988775443
No 103
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.01 E-value=9.1e-05 Score=75.10 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=72.3
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCceE
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKKF 102 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 102 (794)
-|.++|++|+||||+|+.+++............|+.++. . ++...+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 467999999999999977765211011111112333331 1 1222222211 11222223322 235
Q ss_pred EEEEeCCCCC---------CccChhhhHhhccCCCCCcEEEEEccchhhhhcc--------cccceEEccCCChHhHHHH
Q 045633 103 FLILDDVWTD---------DHSKWEPFHNCLMNGLCGSRILVTTRKETVARMM--------ESTDVISIKELSEHECWSL 165 (794)
Q Consensus 103 LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~--------~~~~~~~l~~l~~~ea~~L 165 (794)
+|++|+++.. .......+...+.....+.+||+++........+ .....+++++++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999532 1122344555555555566777777643322111 1135789999999999999
Q ss_pred HHHHhhC
Q 045633 166 FKRFAFS 172 (794)
Q Consensus 166 f~~~~~~ 172 (794)
+...+..
T Consensus 204 ~~~~l~~ 210 (284)
T TIGR02880 204 AGLMLKE 210 (284)
T ss_pred HHHHHHH
Confidence 9887654
No 104
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.00025 Score=67.47 Aligned_cols=179 Identities=20% Similarity=0.247 Sum_probs=105.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEe-cCCCCHHHHHHHHHHHhcCCCCCCCCHHHHH----HHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV-SDPFDEFRIAKAIIEGLEGSLPNLGELNSLL----EYIH 94 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~----~~l~ 94 (794)
+.+++.++|.-|.|||.++++.... ... +.++-|.. ....+...+...+...+..+.. ..+.... ..+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~--~~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPK--VNVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCcc--chhHHHHHHHHHHHH
Confidence 5679999999999999999955431 111 11222222 2345566777777777776322 2233223 3333
Q ss_pred hHc-CCce-EEEEEeCCCCCCccChhhhHhhccCCCCC---cEEEEEccchh-------hhhcc-cccce-EEccCCChH
Q 045633 95 TSI-KGKK-FFLILDDVWTDDHSKWEPFHNCLMNGLCG---SRILVTTRKET-------VARMM-ESTDV-ISIKELSEH 160 (794)
Q Consensus 95 ~~l-~~~~-~LlvlDdv~~~~~~~~~~l~~~l~~~~~g---s~iivTtr~~~-------v~~~~-~~~~~-~~l~~l~~~ 160 (794)
... +++| ..+++|+..+.....++.+.-...-...+ -+|+.....+- +.+.. ....+ |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 333 4667 99999999665555566654332221111 13444333211 11111 11234 999999999
Q ss_pred hHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHh
Q 045633 161 ECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGS 205 (794)
Q Consensus 161 ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 205 (794)
+...++..+..+...+.. -...+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~-l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEP-LFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcc-cCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999887776543321 22245677788999999999987764
No 105
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00029 Score=77.91 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=70.5
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVARM-MESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.+++-++|+|+++.........+...+........+|++|.+ ..+... ......+++.+++.++..+.+.+.+...+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred cCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 356678999999777777777888777766556666655543 333322 233568999999999999888876655443
Q ss_pred CCChhHHHHHHHHHHhhcCCCc-hHHHHHHhhh
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLP-LAAKTIGSLL 207 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l 207 (794)
... .+....|++.++|-+ .|+..+-.++
T Consensus 196 ~i~----~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 196 VVD----DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred CCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 221 344566888888876 4555554443
No 106
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=1.2e-05 Score=83.99 Aligned_cols=97 Identities=9% Similarity=0.059 Sum_probs=66.9
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhhc-ccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VARM-MESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+++.++|+|+++..+......+...+.....++.+|++|.+.. +... ......+.+.+++.++..+++......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---- 215 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---- 215 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----
Confidence 5677999999987777777777777766555666777776653 2221 234568999999999999999875311
Q ss_pred CChhHHHHHHHHHHhhcCCCchHHHHH
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPLAAKTI 203 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Plal~~~ 203 (794)
.. .+....+++.++|.|.....+
T Consensus 216 ~~----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 216 LP----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 11 111256888999999755433
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.0002 Score=79.64 Aligned_cols=172 Identities=15% Similarity=0.152 Sum_probs=96.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCC----eEEEEEecCCCCHHHHHHHHHHHhcCC-----CCCCCCHHHH-
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFD----KRIWVCVSDPFDEFRIAKAIIEGLEGS-----LPNLGELNSL- 89 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~----~~~~v~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~- 89 (794)
-.+.+.++|+.|+||||+|+.+++. +..... +..+ ........-+.|...-... ......++++
T Consensus 45 i~ha~L~~Gp~GvGKTt~Ar~lAk~--L~c~~~~~~~~~~~----~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IR 118 (598)
T PRK09111 45 IAQAFMLTGVRGVGKTTTARILARA--LNYEGPDGDGGPTI----DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIR 118 (598)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh--hCcCCccccCCCcc----ccCcccHHHHHHhcCCCCceEEecccccCCHHHHH
Confidence 3557889999999999999998873 322110 0000 0011111112222111100 0011123332
Q ss_pred --HHHHHhH-cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEcc-chhhhhc-ccccceEEccCCChHhHHH
Q 045633 90 --LEYIHTS-IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTR-KETVARM-MESTDVISIKELSEHECWS 164 (794)
Q Consensus 90 --~~~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~-~~~~~~~~l~~l~~~ea~~ 164 (794)
.+.+... +.+++-++|+|+++.........+...+..-...+.+|++|. .+.+... ......+++..++.++...
T Consensus 119 eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~ 198 (598)
T PRK09111 119 EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAA 198 (598)
T ss_pred HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHH
Confidence 2222211 234566799999977666667777777766555677766553 3333222 2335688999999999999
Q ss_pred HHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHH
Q 045633 165 LFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 165 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
.+.+.+...+.... .+....|++.++|-+..+.
T Consensus 199 ~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 199 HLSRIAAKEGVEVE----DEALALIARAAEGSVRDGL 231 (598)
T ss_pred HHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 99887655443222 3456778888999886543
No 108
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.95 E-value=8.2e-05 Score=74.89 Aligned_cols=139 Identities=13% Similarity=0.134 Sum_probs=71.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
.....+.++|++|+||||+|+.+++............++.++.. + +....-+ .........+.+.
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~----l~~~~~g-----~~~~~~~~~~~~a-- 104 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----D----LVGEYIG-----HTAQKTREVIKKA-- 104 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----H----hhhhhcc-----chHHHHHHHHHhc--
Confidence 34566779999999999999998762100011111123333211 1 1111100 0111222222222
Q ss_pred CceEEEEEeCCCCCC--------ccChhhhHhhccCCCCCcEEEEEccchhhhh-------cccc-cceEEccCCChHhH
Q 045633 99 GKKFFLILDDVWTDD--------HSKWEPFHNCLMNGLCGSRILVTTRKETVAR-------MMES-TDVISIKELSEHEC 162 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-------~~~~-~~~~~l~~l~~~ea 162 (794)
..-+|++|+++.-. ....+.+...+........+|+++....... .... ...+.+++++.++-
T Consensus 105 -~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el 183 (261)
T TIGR02881 105 -LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEEL 183 (261)
T ss_pred -cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHH
Confidence 12488999995421 1233445554444433445666655433211 0111 34688999999999
Q ss_pred HHHHHHHhhCC
Q 045633 163 WSLFKRFAFSG 173 (794)
Q Consensus 163 ~~Lf~~~~~~~ 173 (794)
.+++.+.+...
T Consensus 184 ~~Il~~~~~~~ 194 (261)
T TIGR02881 184 MEIAERMVKER 194 (261)
T ss_pred HHHHHHHHHHc
Confidence 99998877543
No 109
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00042 Score=75.47 Aligned_cols=99 Identities=11% Similarity=0.119 Sum_probs=68.7
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhh-cccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MMESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+++-++|+|+++.........+...+....+.+++|++|.+.. +.. .......+++.+++.++..+.+.+.+...+..
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4667899999977776677778777776656677777776532 211 12335689999999999999888766554432
Q ss_pred CChhHHHHHHHHHHhhcCCCchHHH
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
.. .+.+..|++.++|-+.-+.
T Consensus 196 i~----~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 196 YE----PEALEILARSGNGSLRDTL 216 (535)
T ss_pred CC----HHHHHHHHHHcCCcHHHHH
Confidence 22 3456778888999885443
No 110
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.93 E-value=0.0001 Score=78.29 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=81.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhH-cCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTS-IKG 99 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~ 99 (794)
++-|.|+|++|+|||++|+++++ +....| +.+.. ..+. ....+ ........+.+. -..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~~----~~l~----~~~~g------~~~~~i~~~f~~a~~~ 214 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVVG----SELV----RKYIG------EGARLVREIFELAKEK 214 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecch----HHHH----HHhhh------HHHHHHHHHHHHHHhc
Confidence 45688999999999999999998 343333 22211 1111 11100 011111122221 134
Q ss_pred ceEEEEEeCCCCCC-----------cc---ChhhhHhhccC--CCCCcEEEEEccchhh-----hhcccccceEEccCCC
Q 045633 100 KKFFLILDDVWTDD-----------HS---KWEPFHNCLMN--GLCGSRILVTTRKETV-----ARMMESTDVISIKELS 158 (794)
Q Consensus 100 ~~~LlvlDdv~~~~-----------~~---~~~~l~~~l~~--~~~gs~iivTtr~~~v-----~~~~~~~~~~~l~~l~ 158 (794)
.+.+|++|+++... .. .+..+...+.. ...+.+||.||..... .+....+..++++..+
T Consensus 215 ~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~ 294 (364)
T TIGR01242 215 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294 (364)
T ss_pred CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcC
Confidence 57899999985421 00 12222222221 1235678888875432 1111225678999999
Q ss_pred hHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCc
Q 045633 159 EHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLP 197 (794)
Q Consensus 159 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 197 (794)
.++..++|..++....... ... ...+++.+.|..
T Consensus 295 ~~~r~~Il~~~~~~~~l~~-~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 295 FEGRLEILKIHTRKMKLAE-DVD----LEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHHHhcCCCCc-cCC----HHHHHHHcCCCC
Confidence 9999999998775543221 112 244566666654
No 111
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00017 Score=74.36 Aligned_cols=95 Identities=11% Similarity=0.110 Sum_probs=64.7
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhh-cccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MMESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+++-++|+|+++..+......+...+..-..++.+|+||.+.. +.. .......+.+.+++.+++.+.+...... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C--
Confidence 3445557799988777778888887776556777777777653 322 2334567999999999999988765311 1
Q ss_pred CChhHHHHHHHHHHhhcCCCchHHH
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
. .+.+..++..++|.|....
T Consensus 182 ~-----~~~~~~~l~la~Gsp~~A~ 201 (328)
T PRK05707 182 D-----ERERIELLTLAGGSPLRAL 201 (328)
T ss_pred C-----hHHHHHHHHHcCCCHHHHH
Confidence 1 2234567788999996443
No 112
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=3.7e-05 Score=79.70 Aligned_cols=142 Identities=17% Similarity=0.304 Sum_probs=91.1
Q ss_pred HhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeecccccceEeCcccc
Q 045633 595 ICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMVSVKKVGDEFL 673 (794)
Q Consensus 595 ~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~ 673 (794)
....+..+++++.|++++|....+ |. -..+|+.|++++|..+..+|. + .++|+.|++++|..+..+|..+.
T Consensus 44 a~~r~~~~~~l~~L~Is~c~L~sL---P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe 115 (426)
T PRK15386 44 ITPQIEEARASGRLYIKDCDIESL---PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVR 115 (426)
T ss_pred HHHHHHHhcCCCEEEeCCCCCccc---CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccc
Confidence 344455668999999999976666 62 235799999999999888885 3 36999999999988887776543
Q ss_pred cCcccCCCccccccCCCccccC-CccceeeccccccccccccCCCCccCC-CcccEEeeccCccCcCCCcCccCCCCccE
Q 045633 674 GIGIRDHNHIHGTFSSSSVVAF-PKLEKLDLWIMLQLEEWDFGKEDITIM-PQIKSLMIFSCEKLKSLPDQLLRSTTLES 751 (794)
Q Consensus 674 ~~~~l~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~ip~~~~~l~~L~~ 751 (794)
. +.+.+..... +..+ ++|+.|.+.+......+.. +. .+ ++|+.|++.+|..+ .+|..+ +.+|+.
T Consensus 116 ~------L~L~~n~~~~-L~~LPssLk~L~I~~~n~~~~~~l-p~---~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~ 181 (426)
T PRK15386 116 S------LEIKGSATDS-IKNVPNGLTSLSINSYNPENQARI-DN---LISPSLKTLSLTGCSNI-ILPEKL--PESLQS 181 (426)
T ss_pred e------EEeCCCCCcc-cccCcchHhheecccccccccccc-cc---ccCCcccEEEecCCCcc-cCcccc--cccCcE
Confidence 2 2222211111 2333 4677777654321111110 11 23 47999999988644 456544 468888
Q ss_pred EEeccCc
Q 045633 752 LEIGEAP 758 (794)
Q Consensus 752 L~l~~~~ 758 (794)
|+++.|.
T Consensus 182 L~ls~n~ 188 (426)
T PRK15386 182 ITLHIEQ 188 (426)
T ss_pred EEecccc
Confidence 8887653
No 113
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00027 Score=79.12 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=66.4
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEc-cchhhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTT-RKETVARM-MESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.+++-++|+|+++......+..+...+........+|++| +...+... ......+++.+++.++..+.+...+...+.
T Consensus 116 ~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI 195 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI 195 (725)
T ss_pred cCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3567789999997666666777777766544455555544 43333322 233468999999999999888876544332
Q ss_pred CCChhHHHHHHHHHHhhcCCCc-hHHHHHH
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLP-LAAKTIG 204 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 204 (794)
... .+.+..|++.++|-+ .|+..+.
T Consensus 196 ~id----~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 196 SYE----KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred CCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 221 344667888898865 4555444
No 114
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.0004 Score=74.00 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=87.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccc--------cCCe-EEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIE--------NFDK-RIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLL 90 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~--------~f~~-~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 90 (794)
-.+.+.++|+.|+||||+|+.+.+. +.. .|.. ++.++....... +..+.+++++...
T Consensus 38 ~~~~~L~~G~~G~GKt~~a~~la~~--l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~~l~~~~~~~----------- 103 (367)
T PRK14970 38 LAQALLFCGPRGVGKTTCARILARK--INQPGYDDPNEDFSFNIFELDAASNNSV-DDIRNLIDQVRIP----------- 103 (367)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCCCcceEEeccccCCCH-HHHHHHHHHHhhc-----------
Confidence 3467889999999999999988763 221 1211 111111111111 1111222211100
Q ss_pred HHHHhHcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhhc-ccccceEEccCCChHhHHHHHHH
Q 045633 91 EYIHTSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKELSEHECWSLFKR 168 (794)
Q Consensus 91 ~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~ 168 (794)
-..+++-++|+|+++......+..+...+......+.+|++|..+ .+... ......++..+++.++....+..
T Consensus 104 -----p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~ 178 (367)
T PRK14970 104 -----PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAG 178 (367)
T ss_pred -----cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHH
Confidence 112455689999996544445666666665444455666655432 22211 22345789999999999988887
Q ss_pred HhhCCCCCCChhHHHHHHHHHHhhcCCCch
Q 045633 169 FAFSGRSPTDCEQLEEIGRKIVGKCKGLPL 198 (794)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 198 (794)
.+...+.... .+.+..+++.++|-+-
T Consensus 179 ~~~~~g~~i~----~~al~~l~~~~~gdlr 204 (367)
T PRK14970 179 IAVKEGIKFE----DDALHIIAQKADGALR 204 (367)
T ss_pred HHHHcCCCCC----HHHHHHHHHhCCCCHH
Confidence 7655443222 3456677888888654
No 115
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00031 Score=79.00 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=95.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHH--
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-----LPNLGELNSLLEYI-- 93 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l-- 93 (794)
.+.+.++|+.|+||||+|+.+++ .+...... ......+.....+.+....... .......+++.+.+
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~--~l~c~~~~----~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~ 111 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAK--AVNCTTND----PKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIER 111 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH--HhcCCCCC----CCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHH
Confidence 45677999999999999998886 33211100 0001112222333333221111 00111222222222
Q ss_pred -HhH-cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhhc-ccccceEEccCCChHhHHHHHHHH
Q 045633 94 -HTS-IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 94 -~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
... ..+++-++|+|+++.......+.+...+......+.+|+++.+. .+... ......+++..++..+....+.+.
T Consensus 112 ~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~ 191 (585)
T PRK14950 112 VQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKI 191 (585)
T ss_pred HhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHH
Confidence 111 13457789999996655556677777766655566676666543 23221 223457889999999999888877
Q ss_pred hhCCCCCCChhHHHHHHHHHHhhcCCCchHHH
Q 045633 170 AFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
+...+.... .+.+..|++.++|.+..+.
T Consensus 192 a~~egl~i~----~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 192 AAAEGINLE----PGALEAIARAATGSMRDAE 219 (585)
T ss_pred HHHcCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 655443221 3456778889999886443
No 116
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.91 E-value=0.00016 Score=78.12 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=91.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccC--CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
...+.|+|..|+|||.||+++++ ++.... ..++|++. ......+...+... ..+.. .+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~----~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEF----KEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHH----HHHHH
Confidence 35688999999999999999998 444333 24667753 23344454444321 22222 22222
Q ss_pred CceEEEEEeCCCCCCcc-C-hhhhHhhccCC-CCCcEEEEEccch-h--------hhhcccccceEEccCCChHhHHHHH
Q 045633 99 GKKFFLILDDVWTDDHS-K-WEPFHNCLMNG-LCGSRILVTTRKE-T--------VARMMESTDVISIKELSEHECWSLF 166 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~-~-~~~l~~~l~~~-~~gs~iivTtr~~-~--------v~~~~~~~~~~~l~~l~~~ea~~Lf 166 (794)
+ .-+||+||++..... . .+.+...+... ..|..+|+|+... . +...+....++.+++.+.++-.+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 348899999542211 1 12232222211 1345688887642 1 1122233457899999999999999
Q ss_pred HHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHH
Q 045633 167 KRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
.+.+...+.... +++...|++.+.|..-.+.
T Consensus 278 ~~~~~~~~~~l~----~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEGLELP----DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHH
Confidence 988765433222 4556667777777766544
No 117
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.91 E-value=0.00039 Score=81.25 Aligned_cols=190 Identities=14% Similarity=0.137 Sum_probs=109.0
Q ss_pred CCceEEEEEeCCCCCCccChhhh---Hhhcc---CCCCCcEEEEEccch--hhhhcccccceEEccCCChHhHHHHHHHH
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPF---HNCLM---NGLCGSRILVTTRKE--TVARMMESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l---~~~l~---~~~~gs~iivTtr~~--~v~~~~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
+.++.++|+||+.-.|...++-+ ..... ...+..-.+.|.+.. .+-........+.+.||+..+...+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 45699999999933333333222 22221 000111233333333 11122233568999999999999999887
Q ss_pred hhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCC------CCHHHHHHHHhhhhcccchhcccchhHHHhhhc
Q 045633 170 AFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFK------KTREEWQLILNSEMWQLEDFEKNLLAPLQLSYN 243 (794)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~ 243 (794)
....... ..+..+.|+++..|+|+-++-+-..+... .+...|..-... ....... +.+.+.+..-.+
T Consensus 232 l~~~~~~-----~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~-~~vv~~l~~rl~ 304 (849)
T COG3899 232 LGCTKLL-----PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATT-DAVVEFLAARLQ 304 (849)
T ss_pred hCCcccc-----cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhh-HHHHHHHHHHHh
Confidence 6442222 24567789999999999998887777542 233444321111 0011111 225556888899
Q ss_pred CCChHHHhhhhhcccCCCCcccChhHHHHHHHHcCCccccCCcchhhhhhHHHHHHHhccCcc
Q 045633 244 DLPPEIKRCFLYCVVFPKDYDLDKGELVRLWMAQGYIEKKGNIEMEMTGGWYFDFLASRSFFQ 306 (794)
Q Consensus 244 ~L~~~~k~~fl~la~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sll~ 306 (794)
.||...++.+...||+...|. .+.+...+-. .....+...++.|....++.
T Consensus 305 kL~~~t~~Vl~~AA~iG~~F~--l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~ 355 (849)
T COG3899 305 KLPGTTREVLKAAACIGNRFD--LDTLAALAED----------SPALEAAALLDALQEGLILP 355 (849)
T ss_pred cCCHHHHHHHHHHHHhCccCC--HHHHHHHHhh----------chHHHHHHHHHHhHhhceec
Confidence 999999999999999976544 4444444321 22334444455555555544
No 118
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00029 Score=78.48 Aligned_cols=177 Identities=16% Similarity=0.195 Sum_probs=95.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCcccccc--CCeEEEEE-ecCCCCHHHHHHHHHHHhcCC-----CCCCCCHHHHHHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIEN--FDKRIWVC-VSDPFDEFRIAKAIIEGLEGS-----LPNLGELNSLLEY 92 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~--f~~~~~v~-~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~ 92 (794)
.+.+.++|+.|+||||+|+.+++ .+... ++...|.. ..........-+.+...-... ......++++...
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk--~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l 115 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAK--AVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQL 115 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHH--HhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHH
Confidence 45688999999999999988876 23211 11001110 011111122222221111000 0011123333322
Q ss_pred HHhH----cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhhc-ccccceEEccCCChHhHHHHH
Q 045633 93 IHTS----IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVARM-MESTDVISIKELSEHECWSLF 166 (794)
Q Consensus 93 l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~l~~~ea~~Lf 166 (794)
+... +.+++-++|+|+++.......+.+...+..-...+.+|++|.+ ..+... ......+++.+++.++....+
T Consensus 116 ~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L 195 (620)
T PRK14954 116 RENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQL 195 (620)
T ss_pred HHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHH
Confidence 2221 2345668899999766655677787777765555665555543 333322 234568999999999988888
Q ss_pred HHHhhCCCCCCChhHHHHHHHHHHhhcCCCch-HHHHH
Q 045633 167 KRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPL-AAKTI 203 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 203 (794)
.+.+...+.... .+.+..+++.++|..- |+..+
T Consensus 196 ~~i~~~egi~I~----~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 196 QMICRAEGIQID----ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHH
Confidence 776554332221 3456778888998554 44433
No 119
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=0.00018 Score=77.72 Aligned_cols=158 Identities=16% Similarity=0.188 Sum_probs=92.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccC-C-eEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENF-D-KRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f-~-~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
...+.|||..|+|||+||+++++ ++...+ . .++|++. .+...++...+... ..++ ..+.++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHH
Confidence 34588999999999999999998 444332 2 4677764 34555555554321 1222 222333
Q ss_pred CceEEEEEeCCCCCC-c----cChhhhHhhccCCCCCcEEEEEcc-chh--------hhhcccccceEEccCCChHhHHH
Q 045633 99 GKKFFLILDDVWTDD-H----SKWEPFHNCLMNGLCGSRILVTTR-KET--------VARMMESTDVISIKELSEHECWS 164 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~-~----~~~~~l~~~l~~~~~gs~iivTtr-~~~--------v~~~~~~~~~~~l~~l~~~ea~~ 164 (794)
.+.-+|++||++... . ..+..+...+.. .|..||+||. ... +...+....++.+++.+.++-.+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHH--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 345589999995321 1 112222222222 2446888875 322 11122334578999999999999
Q ss_pred HHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHH
Q 045633 165 LFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 165 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
++.+.+........ .+++..|++.+.|....+.
T Consensus 271 IL~~~~~~~~~~l~----~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 271 IARKMLEIEHGELP----EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHhcCCCCC----HHHHHHHHhccccCHHHHH
Confidence 99888754332221 4556778887777655444
No 120
>PTZ00202 tuzin; Provisional
Probab=97.89 E-value=0.00039 Score=71.79 Aligned_cols=156 Identities=14% Similarity=0.151 Sum_probs=91.5
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP 81 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 81 (794)
|...+...|...+. ..++++.|+|++|+|||||++.+... .. ...++++.. +..++++.++.+++....
T Consensus 270 Ela~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~--l~---~~qL~vNpr---g~eElLr~LL~ALGV~p~ 338 (550)
T PTZ00202 270 EESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRK--EG---MPAVFVDVR---GTEDTLRSVVKALGVPNV 338 (550)
T ss_pred HHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhc--CC---ceEEEECCC---CHHHHHHHHHHHcCCCCc
Confidence 44555555543321 24569999999999999999998863 22 123334333 679999999999997422
Q ss_pred CCCCHHHHHHHHHhHc-----C-CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhhc---ccccceE
Q 045633 82 NLGELNSLLEYIHTSI-----K-GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVARM---MESTDVI 152 (794)
Q Consensus 82 ~~~~~~~~~~~l~~~l-----~-~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~---~~~~~~~ 152 (794)
....++...|.+.+ . +++.+||+-=-+..+......=.-.|.....-|+|++----+.+.-. +..-+.|
T Consensus 339 --~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~ 416 (550)
T PTZ00202 339 --EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFY 416 (550)
T ss_pred --ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeE
Confidence 22234444444333 2 66777776532212222211111223444456788875544332211 1224678
Q ss_pred EccCCChHhHHHHHHHHh
Q 045633 153 SIKELSEHECWSLFKRFA 170 (794)
Q Consensus 153 ~l~~l~~~ea~~Lf~~~~ 170 (794)
.+++|+.++|.++-.+..
T Consensus 417 ~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 417 LVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ecCCCCHHHHHHHHhhcc
Confidence 999999999999876643
No 121
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00066 Score=74.00 Aligned_cols=99 Identities=12% Similarity=0.133 Sum_probs=63.7
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVARM-MESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.+++-++|+|+++.......+.+...+....+...+|++|.+ ..+... ......+.+.+++.++....+...+...+.
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi 196 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI 196 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 356779999999665555566777666665445556555543 333221 223457899999999999888887655443
Q ss_pred CCChhHHHHHHHHHHhhcCCCchHH
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
... .+.+..|++.++|.+..+
T Consensus 197 ~id----~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 197 EYE----EKALDLLAQASEGGMRDA 217 (486)
T ss_pred CCC----HHHHHHHHHHcCCCHHHH
Confidence 222 344666788888876543
No 122
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.89 E-value=0.00018 Score=77.48 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=85.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
...+.|+|+.|+|||+||+++++ .+......+++++. ..+...+...+... . ....+..++ +
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 35678999999999999999998 44333334667653 33444444444321 1 122333333 3
Q ss_pred eEEEEEeCCCCCCcc--ChhhhHhhccCC-CCCcEEEEEccch-h--------hhhcccccceEEccCCChHhHHHHHHH
Q 045633 101 KFFLILDDVWTDDHS--KWEPFHNCLMNG-LCGSRILVTTRKE-T--------VARMMESTDVISIKELSEHECWSLFKR 168 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~--~~~~l~~~l~~~-~~gs~iivTtr~~-~--------v~~~~~~~~~~~l~~l~~~ea~~Lf~~ 168 (794)
.-++++||+...... ..+.+...+... ..|..||+||... . +...+....++.+.+++.++-.+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 447888998543211 112222222111 1245688888542 1 222233346889999999999999988
Q ss_pred HhhCCCCCCChhHHHHHHHHHHhhcCC
Q 045633 169 FAFSGRSPTDCEQLEEIGRKIVGKCKG 195 (794)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~g 195 (794)
.+...+.... .++..-|+..+.|
T Consensus 283 k~~~~~~~l~----~evl~~la~~~~~ 305 (445)
T PRK12422 283 KAEALSIRIE----ETALDFLIEALSS 305 (445)
T ss_pred HHHHcCCCCC----HHHHHHHHHhcCC
Confidence 7765433222 2334445554443
No 123
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00036 Score=80.43 Aligned_cols=97 Identities=8% Similarity=0.090 Sum_probs=66.5
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.++.-++|||+++......+..|...+..-...+.+|++|.+. .+... ......|++..++.++..+++.+.+...+.
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv 197 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV 197 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 4566788999998777777788888887766666766666443 33322 234568999999999998888776544332
Q ss_pred CCChhHHHHHHHHHHhhcCCCch
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLPL 198 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~Pl 198 (794)
... .+....|++.++|-+.
T Consensus 198 ~id----~eal~lLa~~sgGdlR 216 (824)
T PRK07764 198 PVE----PGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCC----HHHHHHHHHHcCCCHH
Confidence 221 3345668888999773
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.88 E-value=0.00011 Score=76.58 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=75.3
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN 82 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 82 (794)
++.+.+++... .-..++.++|++|+||||+|+.+++ .... .+..++.+. .....+ +..+..+....
T Consensus 30 ~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~--~~~~---~~~~i~~~~-~~~~~i-~~~l~~~~~~~-- 95 (316)
T PHA02544 30 KETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCN--EVGA---EVLFVNGSD-CRIDFV-RNRLTRFASTV-- 95 (316)
T ss_pred HHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHH--HhCc---cceEeccCc-ccHHHH-HHHHHHHHHhh--
Confidence 34555555432 2356787899999999999999987 3322 234455443 221111 11111110000
Q ss_pred CCCHHHHHHHHHhHcCCceEEEEEeCCCCC-CccChhhhHhhccCCCCCcEEEEEccchhhh-h-cccccceEEccCCCh
Q 045633 83 LGELNSLLEYIHTSIKGKKFFLILDDVWTD-DHSKWEPFHNCLMNGLCGSRILVTTRKETVA-R-MMESTDVISIKELSE 159 (794)
Q Consensus 83 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~-~~~~~~~~~l~~l~~ 159 (794)
.+.+.+-++|+|+++.. .....+.+...+.....++++|+||...... . .......+.++..+.
T Consensus 96 -------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~ 162 (316)
T PHA02544 96 -------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTK 162 (316)
T ss_pred -------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCH
Confidence 01234567899999654 2222333444454445677899988754311 1 112234677777788
Q ss_pred HhHHHHHHH
Q 045633 160 HECWSLFKR 168 (794)
Q Consensus 160 ~ea~~Lf~~ 168 (794)
++..+++..
T Consensus 163 ~~~~~il~~ 171 (316)
T PHA02544 163 EEQIEMMKQ 171 (316)
T ss_pred HHHHHHHHH
Confidence 887766554
No 125
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.85 E-value=4.5e-05 Score=68.02 Aligned_cols=97 Identities=22% Similarity=0.110 Sum_probs=52.0
Q ss_pred EEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC-ceE
Q 045633 24 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG-KKF 102 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~ 102 (794)
|.|+|+.|+||||+|+.++++ .. ..++.++.+.- ... ........+...+.+.-+. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~---~~~~~i~~~~~--------------~~~-~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LG---FPFIEIDGSEL--------------ISS-YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TT---SEEEEEETTHH--------------HTS-STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--cc---ccccccccccc--------------ccc-cccccccccccccccccccccce
Confidence 569999999999999999983 32 12445544321 000 0111112222222222222 479
Q ss_pred EEEEeCCCCCCccC-----------hhhhHhhccCCC---CCcEEEEEccch
Q 045633 103 FLILDDVWTDDHSK-----------WEPFHNCLMNGL---CGSRILVTTRKE 140 (794)
Q Consensus 103 LlvlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~iivTtr~~ 140 (794)
+|++||++...... ...+...+.... .+..||.||...
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 99999995533333 344444444433 235677777753
No 126
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.00035 Score=76.65 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=90.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccC--CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
..+.|||..|+|||.|++++++ .....+ ..++|++. .++..++...+... .. ..+++.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cH----HHHHHHhhc
Confidence 3488999999999999999998 443322 24667754 33444444443221 11 223333332
Q ss_pred ceEEEEEeCCCCCCc-cC----hhhhHhhccCCCCCcEEEEEccch---------hhhhcccccceEEccCCChHhHHHH
Q 045633 100 KKFFLILDDVWTDDH-SK----WEPFHNCLMNGLCGSRILVTTRKE---------TVARMMESTDVISIKELSEHECWSL 165 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~-~~----~~~l~~~l~~~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~l~~~ea~~L 165 (794)
-=+|||||+..... .. +..+...+.. .|..|||||+.. .+...+...-++++++.+.+.-.++
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e--~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHN--ANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHh--cCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 35788899954321 11 2223333322 245688888752 1223344466899999999999999
Q ss_pred HHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHH
Q 045633 166 FKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 166 f~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
+.+++........ .+++.-|++.+.+..-.|
T Consensus 455 L~kka~~r~l~l~----~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 455 LRKKAVQEQLNAP----PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHhcCCCCC----HHHHHHHHHhccCCHHHH
Confidence 9988765443322 345555666665554443
No 127
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00032 Score=75.89 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=65.3
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+++-++|+|+++.......+.+...+........+|++|.+. .+... ......+++.+++.++....+.+.+...+..
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 567789999996655555666777766655566677666432 22221 2335688999999999998888766543322
Q ss_pred CChhHHHHHHHHHHhhcCCCch-HHHHH
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPL-AAKTI 203 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 203 (794)
.. .+.+..|++.++|.+. |+..+
T Consensus 200 i~----~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 200 TS----REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 21 3456778888988664 44443
No 128
>PF14516 AAA_35: AAA-like domain
Probab=97.84 E-value=0.0016 Score=67.78 Aligned_cols=179 Identities=15% Similarity=0.170 Sum_probs=102.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC-----CCHHHHHHHHHHHhcCCCCC-----------CCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-----FDEFRIAKAIIEGLEGSLPN-----------LGE 85 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-----~~~~~~~~~i~~~l~~~~~~-----------~~~ 85 (794)
..+.|.|+-.+|||+|..++.+. ....=..++++++..- .+....++.++..+.....- ...
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~--l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLER--LQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHH--HHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 47889999999999999888873 3322234668887542 24555555555544322110 112
Q ss_pred HHHHHHHHHhHc---CCceEEEEEeCCCCCCc-cC-hhhhHh---hccCCCC-----C-cEE-EEEccchhhhhc-----
Q 045633 86 LNSLLEYIHTSI---KGKKFFLILDDVWTDDH-SK-WEPFHN---CLMNGLC-----G-SRI-LVTTRKETVARM----- 145 (794)
Q Consensus 86 ~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~-~~-~~~l~~---~l~~~~~-----g-s~i-ivTtr~~~v~~~----- 145 (794)
.......+.+.+ .+++.+|++|+++..-. .. ..++.. .+....+ . -+. ++.+........
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SP 189 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSP 189 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCC
Confidence 222333344432 26899999999954211 11 122222 2211111 1 122 222221111111
Q ss_pred ccccceEEccCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCC
Q 045633 146 MESTDVISIKELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFK 210 (794)
Q Consensus 146 ~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~ 210 (794)
......+.+++|+.+|...|..++... .. ....++|...+||+|..+..++..+...
T Consensus 190 FNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~----~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 190 FNIGQPIELPDFTPEEVQELAQRYGLE----FS----QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cccccceeCCCCCHHHHHHHHHhhhcc----CC----HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 223457899999999999999876422 11 1227889999999999999999999643
No 129
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=6.6e-05 Score=77.83 Aligned_cols=109 Identities=18% Similarity=0.187 Sum_probs=65.2
Q ss_pred hccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeecc
Q 045633 625 TASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLW 704 (794)
Q Consensus 625 ~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~ 704 (794)
+..+.+++.|++++| .+..+|.+ .++|+.|.+++|..++.+|..+ .++|+.|.+.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L----------------------P~nLe~L~Ls 102 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPVL--PNELTEITIENCNNLTTLPGSI----------------------PEGLEKLTVC 102 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCCC--CCCCcEEEccCCCCcccCCchh----------------------hhhhhheEcc
Confidence 335789999999999 77888843 3579999999999998887532 1356666666
Q ss_pred ccccccccccCC----------CCccCC-CcccEEeeccCccC--cCCCcCccCCCCccEEEeccCccc
Q 045633 705 IMLQLEEWDFGK----------EDITIM-PQIKSLMIFSCEKL--KSLPDQLLRSTTLESLEIGEAPIV 760 (794)
Q Consensus 705 ~~~~l~~~~~~~----------~~~~~l-~~L~~L~l~~c~~l--~~ip~~~~~l~~L~~L~l~~~~~l 760 (794)
+|.++..++..- ..+..+ ++|+.|.+.++... ..+|.. -+++|++|++.+|..+
T Consensus 103 ~Cs~L~sLP~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 103 HCPEISGLPESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI 169 (426)
T ss_pred CcccccccccccceEEeCCCCCcccccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc
Confidence 655444332100 001112 23444444322111 111211 1468999999999865
No 130
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.80 E-value=0.00011 Score=66.54 Aligned_cols=87 Identities=23% Similarity=0.151 Sum_probs=46.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc-
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK- 100 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 100 (794)
+.+.|+|++|+||||+|+.++.. .......+++++.+........... ...................+....+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 46889999999999999999883 3332234666665543322222211 111111111112222233333333333
Q ss_pred eEEEEEeCCCCC
Q 045633 101 KFFLILDDVWTD 112 (794)
Q Consensus 101 ~~LlvlDdv~~~ 112 (794)
..+|++|+++..
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 499999999653
No 131
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.80 E-value=7.4e-07 Score=89.40 Aligned_cols=146 Identities=18% Similarity=0.188 Sum_probs=99.2
Q ss_pred CCCCCccEEEEeecCCCccCCCCch--hccccCccEEeecCCCCCCcCCC---CCCCCCcceeeecccccceEeCccccc
Q 045633 600 QAPPNIESLNITGFEGRRLIFSSNW--TASLDKLKRLDLAFCPRCEIMPP---LGKLPSLEILRIAEMVSVKKVGDEFLG 674 (794)
Q Consensus 600 ~~~~~L~~L~l~~~~~~~~~~~p~~--~~~l~~L~~L~L~~~~~l~~l~~---l~~L~~L~~L~l~~~~~l~~~~~~~~~ 674 (794)
...+-+..+++..|...+.. .-| -..+..|+.|+.++|..+.+.+. ..+.++|+.|.+++|..+....-...
T Consensus 265 ~~~~~i~~lnl~~c~~lTD~--~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l- 341 (483)
T KOG4341|consen 265 AYCLEILKLNLQHCNQLTDE--DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML- 341 (483)
T ss_pred ccChHhhccchhhhccccch--HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-
Confidence 34455666666666544431 111 12578899999999977655443 34679999999999987666543322
Q ss_pred CcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCC-----CcCccCCCCc
Q 045633 675 IGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSL-----PDQLLRSTTL 749 (794)
Q Consensus 675 ~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i-----p~~~~~l~~L 749 (794)
-.+.+.|+.+++..|.....-+.... -.++|.|+.|.++.|..++.- ...-.++..|
T Consensus 342 -----------------~rn~~~Le~l~~e~~~~~~d~tL~sl-s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 342 -----------------GRNCPHLERLDLEECGLITDGTLASL-SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred -----------------hcCChhhhhhcccccceehhhhHhhh-ccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence 24778999999988765544322111 127899999999999776554 3333457889
Q ss_pred cEEEeccCccccccccc
Q 045633 750 ESLEIGEAPIVEQNFKK 766 (794)
Q Consensus 750 ~~L~l~~~~~l~~~~~~ 766 (794)
+.+++++||.+++.-.+
T Consensus 404 ~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLE 420 (483)
T ss_pred ceeeecCCCCchHHHHH
Confidence 99999999998876543
No 132
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.80 E-value=0.00051 Score=75.13 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=93.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccC--CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
...+.|+|+.|+|||+||+++++ +....+ -.++|++.. .+...+...+... ..+ .+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHHh
Confidence 45688999999999999999998 454443 235676543 3334444444221 122 2223333
Q ss_pred CceEEEEEeCCCCCCcc--ChhhhHh---hccCCCCCcEEEEEccchh---------hhhcccccceEEccCCChHhHHH
Q 045633 99 GKKFFLILDDVWTDDHS--KWEPFHN---CLMNGLCGSRILVTTRKET---------VARMMESTDVISIKELSEHECWS 164 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~--~~~~l~~---~l~~~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~l~~~ea~~ 164 (794)
+.-+||+||++..... ..+.+.. .+.. .|..||+|+.... +...+....++++++.+.++-.+
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHE--AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH--CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 3448999999542111 1122222 2222 2445888876431 12223334579999999999999
Q ss_pred HHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHH
Q 045633 165 LFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 165 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
++.+.+...+... -+++...|++.++|....+.
T Consensus 288 il~~~~~~~~~~l----~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 288 ILKKKAEEEGIDL----PDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHcCCCC----CHHHHHHHHcCcCCCHHHHH
Confidence 9998876533222 14567778888888776544
No 133
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.79 E-value=3.3e-05 Score=73.66 Aligned_cols=55 Identities=25% Similarity=0.259 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 61 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 61 (794)
|.+++...+. . ......+.+.|+|.+|+|||+|+++++. ++......++.+.+..
T Consensus 8 e~~~l~~~l~-~--~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 8 EIERLRDLLD-A--AQSGSPRNLLLTGESGSGKTSLLRALLD--RLAERGGYVISINCDD 62 (185)
T ss_dssp HHHHHHHTTG-G--TSS-----EEE-B-TTSSHHHHHHHHHH--HHHHHT--EEEEEEET
T ss_pred HHHHHHHHHH-H--HHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCEEEEEEEec
Confidence 4566666664 1 1345679999999999999999999888 4444422234444433
No 134
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=3.1e-07 Score=87.79 Aligned_cols=162 Identities=17% Similarity=0.124 Sum_probs=113.4
Q ss_pred CCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCC
Q 045633 560 KNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFC 639 (794)
Q Consensus 560 ~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~ 639 (794)
..|+.|+|+...++ .......+.++.+|+.|.|.|......+ -..+..-.+|+.|+|+.|
T Consensus 185 sRlq~lDLS~s~it------------------~stl~~iLs~C~kLk~lSlEg~~LdD~I--~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 185 SRLQHLDLSNSVIT------------------VSTLHGILSQCSKLKNLSLEGLRLDDPI--VNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhhHHhhcchhhee------------------HHHHHHHHHHHHhhhhccccccccCcHH--HHHHhccccceeeccccc
Confidence 46889999988765 4556667788899999999887754321 233446689999999999
Q ss_pred CCCCcCCC---CCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCC
Q 045633 640 PRCEIMPP---LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGK 716 (794)
Q Consensus 640 ~~l~~l~~---l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 716 (794)
..++.... +..+..|..|+++.|...+....... ..--++|+.|+|+|+.+.-....-.
T Consensus 245 sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V------------------~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 245 SGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV------------------AHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred cccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH------------------hhhchhhhhhhhhhhHhhhhhhHHH
Confidence 87765443 67889999999999875554422211 1233789999999875321111000
Q ss_pred CCccCCCcccEEeeccCccCcC-CCcCccCCCCccEEEeccCcc
Q 045633 717 EDITIMPQIKSLMIFSCEKLKS-LPDQLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 717 ~~~~~l~~L~~L~l~~c~~l~~-ip~~~~~l~~L~~L~l~~~~~ 759 (794)
--...+|+|..|++++|..++. ....+..++-|++|.++.|=.
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 0023689999999999988876 233456789999999999954
No 135
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00089 Score=75.18 Aligned_cols=170 Identities=13% Similarity=0.141 Sum_probs=93.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCcccccc-CCeEEEEEecCCCCHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIEN-FDKRIWVCVSDPFDEFRIAKAIIEGLEGS-----LPNLGELNSLLEYIH 94 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~ 94 (794)
.+.+.++|+.|+||||+|+.+++. +... .+.. ..........-+.+....... ......++.+.+.+.
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~--L~c~~~~~~----~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~ 111 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKS--LNCLNSDKP----TPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIE 111 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHH--hcCCCcCCC----CCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHH
Confidence 356779999999999999998873 2221 1100 001112222222222221110 001112223222222
Q ss_pred hH----cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhhc-ccccceEEccCCChHhHHHHHHH
Q 045633 95 TS----IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKELSEHECWSLFKR 168 (794)
Q Consensus 95 ~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~ 168 (794)
.. ..+++-++|+|+++......+..+...+........+|++|.+. .+... ......+++..++.++....+.+
T Consensus 112 ~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 112 RAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSE 191 (620)
T ss_pred HHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHH
Confidence 11 13556789999997766666777877777644455555555443 33222 23346788889999988888877
Q ss_pred HhhCCCCCCChhHHHHHHHHHHhhcCCCchHH
Q 045633 169 FAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
.+...+.... .+.+..|++.++|.+..+
T Consensus 192 ia~kegi~is----~~al~~La~~s~G~lr~A 219 (620)
T PRK14948 192 IAEKESIEIE----PEALTLVAQRSQGGLRDA 219 (620)
T ss_pred HHHHhCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 6654332221 244677888898877544
No 136
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.0013 Score=63.55 Aligned_cols=157 Identities=20% Similarity=0.223 Sum_probs=88.3
Q ss_pred CCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhH
Q 045633 17 QQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTS 96 (794)
Q Consensus 17 ~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 96 (794)
.++.+--|.++|++|.||||||.-+++ +....+. +..+... ....+++..+- .
T Consensus 48 r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k----~tsGp~l--------------------eK~gDlaaiLt-~ 100 (332)
T COG2255 48 RGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLK----ITSGPAL--------------------EKPGDLAAILT-N 100 (332)
T ss_pred cCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeE----ecccccc--------------------cChhhHHHHHh-c
Confidence 345667788999999999999999988 4443322 1111111 11111122111 1
Q ss_pred cCCceEEEEEeCCCCCCccChhhhHhhccC--------CCCCcEEE-----------EEccchhhhhcccc--cceEEcc
Q 045633 97 IKGKKFFLILDDVWTDDHSKWEPFHNCLMN--------GLCGSRIL-----------VTTRKETVARMMES--TDVISIK 155 (794)
Q Consensus 97 l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~--------~~~gs~ii-----------vTtr~~~v~~~~~~--~~~~~l~ 155 (794)
|+ +.=.+++|.+.......-+-+..+..+ .++++|.| -|||--.+...+.. ..+.+++
T Consensus 101 Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rle 179 (332)
T COG2255 101 LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLE 179 (332)
T ss_pred CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeee
Confidence 22 233466777755433222223333222 23444443 48886444332211 3467888
Q ss_pred CCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhc
Q 045633 156 ELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLR 208 (794)
Q Consensus 156 ~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 208 (794)
..+.+|-.++..+.+..-.... .++-+.+|+++..|-|. ++.++|+
T Consensus 180 fY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPR---IAnRLLr 225 (332)
T COG2255 180 FYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPR---IANRLLR 225 (332)
T ss_pred cCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcH---HHHHHHH
Confidence 8999999999988774433322 24568889999999995 4444554
No 137
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.73 E-value=5.4e-05 Score=56.64 Aligned_cols=59 Identities=25% Similarity=0.416 Sum_probs=48.2
Q ss_pred CccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCc-CccCCCCccEEEeccCc
Q 045633 696 PKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPD-QLLRSTTLESLEIGEAP 758 (794)
Q Consensus 696 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~-~~~~l~~L~~L~l~~~~ 758 (794)
|+|++|++.++ ++..++ +..+..+++|+.|++++| .++.+|. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~--~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIP--PDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEEC--TTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccC--HHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 67899999985 777775 345668999999999988 6777765 56789999999999986
No 138
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.0008 Score=75.56 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=65.5
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEcc-chhhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTR-KETVARM-MESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+++-++|+|+++......++.+...+..-...+.+|++|. ...+... .....++++.+++.++....+.+.+...+..
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 4566889999977666677778887776555666665554 3333322 2345689999999999999888766554432
Q ss_pred CChhHHHHHHHHHHhhcCCCch
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPL 198 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Pl 198 (794)
.. .+.+..|++.++|-..
T Consensus 200 i~----~~al~~La~~s~gdlr 217 (614)
T PRK14971 200 AE----PEALNVIAQKADGGMR 217 (614)
T ss_pred CC----HHHHHHHHHHcCCCHH
Confidence 22 3456778888888664
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.0013 Score=73.04 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=65.7
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVARM-MESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.+++-++|+|+++......++.+...+......+.+|++|.+ ..+... ......++..+++.++..+.+.+.+...+.
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 456678999999776666677777777665556666666654 333222 233457899999999998888877654443
Q ss_pred CCChhHHHHHHHHHHhhcCCCchHH
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
... .+.+..|++.++|-+..+
T Consensus 197 ~id----~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 197 KYE----DEALKWIAYKSTGSVRDA 217 (563)
T ss_pred CCC----HHHHHHHHHHcCCCHHHH
Confidence 222 345666888888877433
No 140
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.00039 Score=72.37 Aligned_cols=149 Identities=18% Similarity=0.254 Sum_probs=90.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCC--eEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFD--KRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI 97 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~--~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 97 (794)
....+.|||..|.|||-|++++.+ ....... .+++++ .+.....+...+.. ...+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 467899999999999999999998 5555554 344443 33444444444332 1233444444
Q ss_pred CCceEEEEEeCCCCCC-----ccChhhhHhhccCCCCCcEEEEEccch---------hhhhcccccceEEccCCChHhHH
Q 045633 98 KGKKFFLILDDVWTDD-----HSKWEPFHNCLMNGLCGSRILVTTRKE---------TVARMMESTDVISIKELSEHECW 163 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~-----~~~~~~l~~~l~~~~~gs~iivTtr~~---------~v~~~~~~~~~~~l~~l~~~ea~ 163 (794)
.-=++++||++.-. ++.+..+...+... |-.||+|++.. ++...+...-++++.+.+.+...
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 34488899995421 12223333333333 33799998642 23333455678999999999999
Q ss_pred HHHHHHhhCCCCCCChhHHHHHHHHH
Q 045633 164 SLFKRFAFSGRSPTDCEQLEEIGRKI 189 (794)
Q Consensus 164 ~Lf~~~~~~~~~~~~~~~~~~~~~~i 189 (794)
.++.+.+...+.....+...-++..+
T Consensus 251 aiL~kka~~~~~~i~~ev~~~la~~~ 276 (408)
T COG0593 251 AILRKKAEDRGIEIPDEVLEFLAKRL 276 (408)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 99998776555444333333333333
No 141
>PRK08116 hypothetical protein; Validated
Probab=97.72 E-value=0.00014 Score=72.85 Aligned_cols=103 Identities=28% Similarity=0.273 Sum_probs=58.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
..+.|+|..|+|||.||.++++ .+..+...++|+++ .+++..+........ ..... .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVNF------PQLLNRIKSTYKSSG--KEDEN----EIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEH------HHHHHHHHHHHhccc--cccHH----HHHHHhcCCC
Confidence 3477999999999999999998 44434445677753 334555544433211 11112 2333344333
Q ss_pred EEEEEeCCCCCCccChhh--hHhhccCC-CCCcEEEEEccc
Q 045633 102 FFLILDDVWTDDHSKWEP--FHNCLMNG-LCGSRILVTTRK 139 (794)
Q Consensus 102 ~LlvlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 139 (794)
||||||+.......|.. +...+... ..|..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995433333432 33333322 245569999874
No 142
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.00087 Score=69.16 Aligned_cols=204 Identities=15% Similarity=0.127 Sum_probs=121.4
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP 81 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 81 (794)
|...+.+++.... ..+..+.+.|.|.+|.|||.+...++.+..-...=-.++++++..-....+++..|...+.....
T Consensus 158 e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~ 235 (529)
T KOG2227|consen 158 EMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLV 235 (529)
T ss_pred HHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhc
Confidence 4445556665443 34567889999999999999999898853222111245788877666777888888877732211
Q ss_pred CCCCHHHHHHHHHhHcCCc--eEEEEEeCCCCCCccChhhhHhhccC-CCCCcEEEEEccc-------hhhhhc---c-c
Q 045633 82 NLGELNSLLEYIHTSIKGK--KFFLILDDVWTDDHSKWEPFHNCLMN-GLCGSRILVTTRK-------ETVARM---M-E 147 (794)
Q Consensus 82 ~~~~~~~~~~~l~~~l~~~--~~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~-------~~v~~~---~-~ 147 (794)
......+..+.+.++.++. .+|+|+|..+.-....-..+...+.+ ..+++|+|+..-- +.+.+. . .
T Consensus 236 s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~ 315 (529)
T KOG2227|consen 236 SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTI 315 (529)
T ss_pred CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCC
Confidence 1111244555666665433 69999999854211111112222222 3456776543221 111111 1 1
Q ss_pred ccceEEccCCChHhHHHHHHHHhhCCCCC-CChhHHHHHHHHHHhhcCCCchHHHHHHhhh
Q 045633 148 STDVISIKELSEHECWSLFKRFAFSGRSP-TDCEQLEEIGRKIVGKCKGLPLAAKTIGSLL 207 (794)
Q Consensus 148 ~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 207 (794)
....+..+|.+.++..++|..+....... ...++++-.|++++...|.+-.|+.+.-+.+
T Consensus 316 ~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 316 KPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred CCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 24578889999999999998877554432 2334666666667667777777777665554
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.70 E-value=0.00033 Score=81.79 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCcccccc------CCeEE-EEEecCCCCHHHHHHHHHH
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN------FDKRI-WVCVSDPFDEFRIAKAIIE 74 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~------f~~~~-~v~~~~~~~~~~~~~~i~~ 74 (794)
|..++++.|.... ..-+.++|++|+||||+|+.+++ ++... .+..+ .++++.
T Consensus 195 ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~~l~l~~------------- 253 (852)
T TIGR03345 195 EIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLLSLDLGL------------- 253 (852)
T ss_pred HHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEEEeehhh-------------
Confidence 3455666555442 23455999999999999999887 33221 12222 233321
Q ss_pred HhcCCCCCCCCHHHHHHHHHhHc--CCceEEEEEeCCCCCC-------ccChhh-hHhhccCCCCCcEEEEEccchhhhh
Q 045633 75 GLEGSLPNLGELNSLLEYIHTSI--KGKKFFLILDDVWTDD-------HSKWEP-FHNCLMNGLCGSRILVTTRKETVAR 144 (794)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-------~~~~~~-l~~~l~~~~~gs~iivTtr~~~v~~ 144 (794)
+........+.++....+.+.. .+++.+|++|++.... ..+... +...+..+ .-++|-||...+...
T Consensus 254 -l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT~~e~~~ 330 (852)
T TIGR03345 254 -LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATTWAEYKK 330 (852)
T ss_pred -hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecCHHHHhh
Confidence 0000001112222222222222 2468999999985421 111112 33333322 346777776543211
Q ss_pred c-------ccccceEEccCCChHhHHHHHHHH
Q 045633 145 M-------MESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 145 ~-------~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
. ......+.+++++.++..++++..
T Consensus 331 ~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 331 YFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred hhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 1 123468999999999999997543
No 144
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.0016 Score=72.91 Aligned_cols=103 Identities=10% Similarity=0.098 Sum_probs=66.3
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhhc-ccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVARM-MESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+++-++|+|+++.........+...+......+.+|++|.+ ..+... ......+++.+++.++....+...+...+..
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 45668999999766666677787777665556666655543 334322 2335678899999999888887765444332
Q ss_pred CChhHHHHHHHHHHhhcCCCc-hHHHHHHh
Q 045633 177 TDCEQLEEIGRKIVGKCKGLP-LAAKTIGS 205 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~P-lal~~~~~ 205 (794)
.. .+.+..|++.++|-. .|+..+-.
T Consensus 198 i~----~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 198 IS----DAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred CC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22 344666888888855 55555533
No 145
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.70 E-value=0.00055 Score=72.85 Aligned_cols=119 Identities=20% Similarity=0.245 Sum_probs=76.9
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCceE
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKKF 102 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 102 (794)
++.|+|+-++||||+++.+... .... .++++..+......-..+. ...+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCCc
Confidence 9999999999999999777662 2222 5666543321111111111 1111111122788
Q ss_pred EEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhh-----c-ccccceEEccCCChHhHHHHH
Q 045633 103 FLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVAR-----M-MESTDVISIKELSEHECWSLF 166 (794)
Q Consensus 103 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-----~-~~~~~~~~l~~l~~~ea~~Lf 166 (794)
+|+||.| .....|+.....+.+.++. +|++|+.+..+.. . .+....+++-||+-.|-..+.
T Consensus 97 yifLDEI--q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEI--QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecc--cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 9999999 5567899988888887766 8999888765432 2 234668899999999976643
No 146
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.70 E-value=0.00014 Score=70.78 Aligned_cols=163 Identities=14% Similarity=0.102 Sum_probs=96.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCe-EEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDK-RIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI 97 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~-~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 97 (794)
........||++|.|||+-|++++...--...|.+ ++-.+++......-+-..+ .+.........+..
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki-----------k~fakl~~~~~~~~ 123 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI-----------KNFAKLTVLLKRSD 123 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh-----------cCHHHHhhcccccc
Confidence 35677889999999999999887763211234533 3334444433222111110 01111100000000
Q ss_pred --CCce-EEEEEeCCCCCCccChhhhHhhccCCCCCcEEEE-Eccchhhhhc-ccccceEEccCCChHhHHHHHHHHhhC
Q 045633 98 --KGKK-FFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILV-TTRKETVARM-MESTDVISIKELSEHECWSLFKRFAFS 172 (794)
Q Consensus 98 --~~~~-~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~ 172 (794)
..++ -.+|||+++....+.|.++...+......+|.|+ |+--..+... ......+..++|.+++...-++..+..
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~ 203 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASK 203 (346)
T ss_pred CCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHH
Confidence 0122 5789999988888899999998888776777554 4443333222 123456888999999999988888766
Q ss_pred CCCCCChhHHHHHHHHHHhhcCCC
Q 045633 173 GRSPTDCEQLEEIGRKIVGKCKGL 196 (794)
Q Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~g~ 196 (794)
.+...+ .+..+.|++.++|-
T Consensus 204 E~v~~d----~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 204 EGVDID----DDALKLIAKISDGD 223 (346)
T ss_pred hCCCCC----HHHHHHHHHHcCCc
Confidence 665543 34456677777764
No 147
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.68 E-value=0.00011 Score=77.11 Aligned_cols=100 Identities=15% Similarity=0.125 Sum_probs=58.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCH-HHHHHHHHhHc--C
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGEL-NSLLEYIHTSI--K 98 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l--~ 98 (794)
+.|.++|++|+|||++|+++++.......|+.+.||.+....+..+....+ ........-. .-..+.+.+.. .
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~----rP~~vgy~~~~G~f~~~~~~A~~~p 270 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY----RPNGVGFRRKDGIFYNFCQQAKEQP 270 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc----CCCCCCeEecCchHHHHHHHHHhcc
Confidence 357799999999999999998743333456778899988776655543321 1111111100 11122223222 2
Q ss_pred CceEEEEEeCCCCCCccC-hhhhHhhcc
Q 045633 99 GKKFFLILDDVWTDDHSK-WEPFHNCLM 125 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~-~~~l~~~l~ 125 (794)
++++++|+|++...+... +..+...+.
T Consensus 271 ~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 271 EKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred cCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 468999999996654433 334443333
No 148
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.66 E-value=2.1e-05 Score=77.44 Aligned_cols=241 Identities=22% Similarity=0.153 Sum_probs=128.4
Q ss_pred ccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCcc-------ccCccCCcEEeccC---
Q 045633 375 IFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRG-------LENLIHLRYLQLSS--- 444 (794)
Q Consensus 375 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~-------i~~l~~L~~L~L~~--- 444 (794)
+..+..+..+.++++....- ....+...+.+.+.|+.-+++.---+.....+|+. +-..++|++|+||+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~E-Aa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTE-AARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHH-HHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 34556667777777632211 12223444556666777666654422223334442 23445777777776
Q ss_pred ----CCccCccccCCCccceec-Cc-CCCcc--------------CcccccccCCceeEecccccccCCC-----CCCCC
Q 045633 445 ----VEELPETCCELLNLQTLD-CL-SLKRL--------------PQGIGKLINLRHLIFDVFGVDYVPN-----GFERL 499 (794)
Q Consensus 445 ----~~~lp~~i~~L~~L~~L~-~~-~l~~l--------------p~~~~~L~~L~~L~l~~~~l~~lp~-----~i~~l 499 (794)
+..+-.-+.+...|++|. ++ .+... -+-+..-++|+.+..+.|++..-+. .+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 222223355566666665 21 12111 0112334566776666666554321 12222
Q ss_pred CCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccc
Q 045633 500 TGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEE 579 (794)
Q Consensus 500 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 579 (794)
+.|++ +.+....--..-..+....+..|++|+.|+|..|.++.
T Consensus 185 ~~lee--------------------------------vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~----- 227 (382)
T KOG1909|consen 185 PTLEE--------------------------------VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL----- 227 (382)
T ss_pred cccce--------------------------------EEEecccccCchhHHHHHHHHhCCcceeeecccchhhh-----
Confidence 22222 22211111111124566678889999999999997652
Q ss_pred cccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCC--CCc-hhccccCccEEeecCCCCCCc----C-CCCCCC
Q 045633 580 APMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIF--SSN-WTASLDKLKRLDLAFCPRCEI----M-PPLGKL 651 (794)
Q Consensus 580 ~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~p~-~~~~l~~L~~L~L~~~~~l~~----l-~~l~~L 651 (794)
.. ...+-..++.+++|+.|+++.|....--. .-. .-...++|+.|.+.+|..-.. + -.+...
T Consensus 228 -------eg---s~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek 297 (382)
T KOG1909|consen 228 -------EG---SVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEK 297 (382)
T ss_pred -------HH---HHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcc
Confidence 00 12344567778899999999887543200 001 112578999999999954321 1 125568
Q ss_pred CCcceeeecccc
Q 045633 652 PSLEILRIAEMV 663 (794)
Q Consensus 652 ~~L~~L~l~~~~ 663 (794)
|.|+.|+|++|.
T Consensus 298 ~dL~kLnLngN~ 309 (382)
T KOG1909|consen 298 PDLEKLNLNGNR 309 (382)
T ss_pred hhhHHhcCCccc
Confidence 999999999864
No 149
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.64 E-value=0.00091 Score=72.48 Aligned_cols=140 Identities=15% Similarity=0.205 Sum_probs=74.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCcccccc-----CCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIEN-----FDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIH 94 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-----f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 94 (794)
.++-|.++|++|+|||++|+++++. .... .....|+++.... ++....+. ....+..+....+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~~e--------Ll~kyvGe--te~~ir~iF~~Ar 282 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKGPE--------LLNKYVGE--TERQIRLIFQRAR 282 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccchh--------hcccccch--HHHHHHHHHHHHH
Confidence 3456889999999999999999983 3322 1234455543311 11110000 0001111222222
Q ss_pred hH-cCCceEEEEEeCCCCCC-------ccC-----hhhhHhhccCC--CCCcEEEEEccchhhhh-c-c---cccceEEc
Q 045633 95 TS-IKGKKFFLILDDVWTDD-------HSK-----WEPFHNCLMNG--LCGSRILVTTRKETVAR-M-M---ESTDVISI 154 (794)
Q Consensus 95 ~~-l~~~~~LlvlDdv~~~~-------~~~-----~~~l~~~l~~~--~~gs~iivTtr~~~v~~-~-~---~~~~~~~l 154 (794)
.. -.+++++|+||+++..- ..+ ...+...+... ..+..||.||....... . . ..+..+++
T Consensus 283 ~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~ 362 (512)
T TIGR03689 283 EKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRI 362 (512)
T ss_pred HHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEe
Confidence 21 13468999999995411 011 12333333322 13444555665443221 1 1 22557999
Q ss_pred cCCChHhHHHHHHHHhh
Q 045633 155 KELSEHECWSLFKRFAF 171 (794)
Q Consensus 155 ~~l~~~ea~~Lf~~~~~ 171 (794)
+..+.++..++|..+..
T Consensus 363 ~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 363 ERPDAEAAADIFSKYLT 379 (512)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999998763
No 150
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.64 E-value=0.0013 Score=66.18 Aligned_cols=140 Identities=12% Similarity=0.097 Sum_probs=70.0
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHH--------HHHh----cCCCCCC-CCHHHH
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI--------IEGL----EGSLPNL-GELNSL 89 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i--------~~~l----~~~~~~~-~~~~~~ 89 (794)
-|.|+|++|+|||++|+.+++ .... ..+++++....+..+++... ..++ ....... ....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV-- 95 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec--
Confidence 466999999999999999986 3322 24555555544443332211 0000 0000000 0000
Q ss_pred HHHHHhHcCCceEEEEEeCCCCCCccChhhhHhhccCC----------------CCCcEEEEEccchhhhh-------cc
Q 045633 90 LEYIHTSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNG----------------LCGSRILVTTRKETVAR-------MM 146 (794)
Q Consensus 90 ~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~iivTtr~~~v~~-------~~ 146 (794)
...+....+ +...+++|++.....+....+...+..+ .++.+||+|+....... ..
T Consensus 96 ~g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~ 174 (262)
T TIGR02640 96 DNRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALL 174 (262)
T ss_pred CchHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHH
Confidence 001111111 3468899999765555555555544321 13568888888532110 01
Q ss_pred cccceEEccCCChHhHHHHHHHHh
Q 045633 147 ESTDVISIKELSEHECWSLFKRFA 170 (794)
Q Consensus 147 ~~~~~~~l~~l~~~ea~~Lf~~~~ 170 (794)
.....+.+...+.++-.+++.++.
T Consensus 175 ~R~~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 175 DRLITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred hhcEEEECCCCCHHHHHHHHHHhh
Confidence 112345666666666666666653
No 151
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.61 E-value=5e-05 Score=56.85 Aligned_cols=56 Identities=32% Similarity=0.417 Sum_probs=29.9
Q ss_pred CccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC-ccccCccCCcEEeccC
Q 045633 380 KLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-RGLENLIHLRYLQLSS 444 (794)
Q Consensus 380 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~ 444 (794)
+|++|.+.++ .+....+..|.++++|++|++++|. +..+| ..|..+++|++|++++
T Consensus 2 ~L~~L~l~~n-----~l~~i~~~~f~~l~~L~~L~l~~N~----l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNN-----KLTEIPPDSFSNLPNLETLDLSNNN----LTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSS-----TESEECTTTTTTGTTESEEEETSSS----ESEEETTTTTTSTTESEEEETS
T ss_pred cCcEEECCCC-----CCCccCHHHHcCCCCCCEeEccCCc----cCccCHHHHcCCCCCCEEeCcC
Confidence 4555555555 2233333455566666666666665 44443 3455666666666553
No 152
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0023 Score=65.47 Aligned_cols=163 Identities=9% Similarity=0.037 Sum_probs=94.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCC-------CCCCCCHHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-------LPNLGELNSLLEY 92 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~~~~ 92 (794)
-.+.+.++|+.|+||+++|+.+++. +-..-.. .....+....-+.+...-... ....-.++++.+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~--llC~~~~-----~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l 95 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQW--LMCQTPQ-----GDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREI 95 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHH--HcCCCCC-----CCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHH
Confidence 3467779999999999999888762 2111000 000111111111111110000 0001123333322
Q ss_pred ---HHhH-cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhh-hcccccceEEccCCChHhHHHHH
Q 045633 93 ---IHTS-IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVA-RMMESTDVISIKELSEHECWSLF 166 (794)
Q Consensus 93 ---l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~-~~~~~~~~~~l~~l~~~ea~~Lf 166 (794)
+... ..+++-++|+|+++.........+...+..-.+++.+|++|.+. .+. ........+.+.+++.+++.+.+
T Consensus 96 ~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L 175 (325)
T PRK06871 96 NEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWL 175 (325)
T ss_pred HHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHH
Confidence 2211 23667788899998877777788888888776777777777664 333 22344568999999999999988
Q ss_pred HHHhhCCCCCCChhHHHHHHHHHHhhcCCCch
Q 045633 167 KRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPL 198 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 198 (794)
..... . . ...+...+..++|.|.
T Consensus 176 ~~~~~---~-~-----~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 176 QAQSS---A-E-----ISEILTALRINYGRPL 198 (325)
T ss_pred HHHhc---c-C-----hHHHHHHHHHcCCCHH
Confidence 77531 1 1 1124556778999995
No 153
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.56 E-value=0.00058 Score=72.77 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=72.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhH-cC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTS-IK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~ 98 (794)
.++-|.++|++|+|||++|+++++ +.... |+.+.. .. +.....+ ........+.+. -.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~i~v~~----~~----l~~~~~g------~~~~~i~~~f~~a~~ 222 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----FIRVVG----SE----LVQKFIG------EGARLVRELFELARE 222 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHH--HhCCC-----EEEeeh----HH----HhHhhcc------chHHHHHHHHHHHHh
Confidence 456688999999999999999987 33322 222211 11 1111111 111112222222 23
Q ss_pred CceEEEEEeCCCCCC-----------ccChhhhHhh---ccCC--CCCcEEEEEccchhhhh-c-c---cccceEEccCC
Q 045633 99 GKKFFLILDDVWTDD-----------HSKWEPFHNC---LMNG--LCGSRILVTTRKETVAR-M-M---ESTDVISIKEL 157 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~-----------~~~~~~l~~~---l~~~--~~gs~iivTtr~~~v~~-~-~---~~~~~~~l~~l 157 (794)
..+.+|++|+++... ......+... +... ..+.+||.||....... . . ..+..+++++.
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 457899999995410 0011112222 2211 23556777777543221 1 1 12457999999
Q ss_pred ChHhHHHHHHHHhhCC
Q 045633 158 SEHECWSLFKRFAFSG 173 (794)
Q Consensus 158 ~~~ea~~Lf~~~~~~~ 173 (794)
+.++..++|+.+....
T Consensus 303 ~~~~R~~Il~~~~~~~ 318 (389)
T PRK03992 303 DEEGRLEILKIHTRKM 318 (389)
T ss_pred CHHHHHHHHHHHhccC
Confidence 9999999999876543
No 154
>PRK08181 transposase; Validated
Probab=97.56 E-value=0.00037 Score=69.35 Aligned_cols=101 Identities=21% Similarity=0.156 Sum_probs=56.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
+-+.|+|+.|+|||.||.++.+ ........++|+++ .++...+..... ....+.....+. +-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l~-----~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKLD-----KF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHHh-----cC
Confidence 3488999999999999999987 34333345677753 345555533321 112222222222 34
Q ss_pred EEEEEeCCCCCCccCh--hhhHhhccCCCCCcEEEEEccch
Q 045633 102 FFLILDDVWTDDHSKW--EPFHNCLMNGLCGSRILVTTRKE 140 (794)
Q Consensus 102 ~LlvlDdv~~~~~~~~--~~l~~~l~~~~~gs~iivTtr~~ 140 (794)
-|||+||+.......+ ..+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 5999999954322222 22333333322223589998853
No 155
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0036 Score=69.80 Aligned_cols=168 Identities=16% Similarity=0.140 Sum_probs=90.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCC-----CCCCCCHH---HHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-----LPNLGELN---SLLE 91 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~---~~~~ 91 (794)
-.+.+.++|+.|+||||+|+.+++ .+...-. ....+.+....-+.+....... ......++ ++.+
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAk--al~c~~~-----~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~ 109 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAK--AVNCLNP-----PDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRD 109 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhcCCCC-----CCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHH
Confidence 356677899999999999988876 2211100 0001111111112221111000 00001122 2222
Q ss_pred HHHhH-cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhhc-ccccceEEccCCChHhHHHHHHH
Q 045633 92 YIHTS-IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVARM-MESTDVISIKELSEHECWSLFKR 168 (794)
Q Consensus 92 ~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~ 168 (794)
.+... ..+++-++|+|+++......+..+...+........+|++|.. ..+... ......++..+++.++..+.+..
T Consensus 110 ~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~ 189 (559)
T PRK05563 110 KVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKY 189 (559)
T ss_pred HHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHH
Confidence 22211 2456778899999766556677777766654445555555543 333222 23345788999999999888887
Q ss_pred HhhCCCCCCChhHHHHHHHHHHhhcCCCch
Q 045633 169 FAFSGRSPTDCEQLEEIGRKIVGKCKGLPL 198 (794)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 198 (794)
.+...+.... .+.+..|++.++|-+.
T Consensus 190 i~~~egi~i~----~~al~~ia~~s~G~~R 215 (559)
T PRK05563 190 ILDKEGIEYE----DEALRLIARAAEGGMR 215 (559)
T ss_pred HHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 7654443222 3446667778887664
No 156
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0011 Score=69.30 Aligned_cols=130 Identities=16% Similarity=0.143 Sum_probs=78.8
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc
Q 045633 18 QNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI 97 (794)
Q Consensus 18 ~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 97 (794)
......|.+.|++|+|||+||..++. ...|..+=-++-.+...+.+ ...+..+........
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~sE---------------saKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLSE---------------SAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCccH---------------HHHHHHHHHHHHHhh
Confidence 34667788999999999999999875 45676554443222111111 112223334444555
Q ss_pred CCceEEEEEeCCCCCCccChhh---------------hHhhccCCCCCcEEEEEccchhhhhcccc----cceEEccCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEP---------------FHNCLMNGLCGSRILVTTRKETVARMMES----TDVISIKELS 158 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~---------------l~~~l~~~~~gs~iivTtr~~~v~~~~~~----~~~~~l~~l~ 158 (794)
+..--.||+||++. ..+|-. +....|+.++.--|+-||..+.+.+.|+. ...+.|+.++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 67788999999933 233322 22223333333345567777888877654 4588999988
Q ss_pred h-HhHHHHHHH
Q 045633 159 E-HECWSLFKR 168 (794)
Q Consensus 159 ~-~ea~~Lf~~ 168 (794)
. ++..+.++.
T Consensus 674 ~~~~~~~vl~~ 684 (744)
T KOG0741|consen 674 TGEQLLEVLEE 684 (744)
T ss_pred chHHHHHHHHH
Confidence 7 666676665
No 157
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0014 Score=68.10 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=51.8
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhh-cccccceEEccCCChHhHHHHHHH
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MMESTDVISIKELSEHECWSLFKR 168 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~~~~~l~~l~~~ea~~Lf~~ 168 (794)
.+++-++|+|+++.........+...+.....++.+|++|.++. +.. .......+++.+++.++..+.+..
T Consensus 108 ~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 35567799999977666677778888877666777777776543 222 224467899999999999888865
No 158
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0031 Score=64.45 Aligned_cols=94 Identities=13% Similarity=0.160 Sum_probs=65.5
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhh-cccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVAR-MMESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+++-++|+|+++.........+...+..-..++.+|++|.+. .+.. .......+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 567799999997777667777877777766677777777653 3332 23445688999999999998886531 1
Q ss_pred CChhHHHHHHHHHHhhcCCCchHHHH
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPLAAKT 202 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Plal~~ 202 (794)
. ...+..++..++|.|.....
T Consensus 187 ~-----~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 187 S-----ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred C-----hHHHHHHHHHcCCCHHHHHH
Confidence 1 12256678899999975543
No 159
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.51 E-value=0.0032 Score=60.42 Aligned_cols=99 Identities=23% Similarity=0.397 Sum_probs=55.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
...-|.+||..|+|||++++++.+ +.... +.--|.+.+ .+..++..+.+.++. +.
T Consensus 51 pannvLL~G~rGtGKSSlVkall~--~y~~~--GLRlIev~k-------------------~~L~~l~~l~~~l~~--~~ 105 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLN--EYADQ--GLRLIEVSK-------------------EDLGDLPELLDLLRD--RP 105 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHH--HHhhc--CceEEEECH-------------------HHhccHHHHHHHHhc--CC
Confidence 345567899999999999999987 33222 111222221 112334444444443 35
Q ss_pred ceEEEEEeCCCCCC-ccChhhhHhhccCC---CC-CcEEEEEccchhhh
Q 045633 100 KKFFLILDDVWTDD-HSKWEPFHNCLMNG---LC-GSRILVTTRKETVA 143 (794)
Q Consensus 100 ~~~LlvlDdv~~~~-~~~~~~l~~~l~~~---~~-gs~iivTtr~~~v~ 143 (794)
.||+|++||+.-+. ...+..+...|..+ .| +..|..||.-+++.
T Consensus 106 ~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 106 YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 79999999985432 23455565555432 22 33444555555543
No 160
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.51 E-value=0.00038 Score=74.20 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=73.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
..+-|.++|++|+|||++|+++++ +....| +.+..+. + .....+. ....+...+......
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~--el~~~f---i~V~~se------L----~~k~~Ge-----~~~~vr~lF~~A~~~ 275 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVAN--ETSATF---LRVVGSE------L----IQKYLGD-----GPKLVRELFRVAEEN 275 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--hhCCCE---EEEecch------h----hhhhcch-----HHHHHHHHHHHHHhC
Confidence 445677999999999999999998 444333 2222111 1 1111000 011111222222245
Q ss_pred ceEEEEEeCCCCCC-----------c---cChhhhHhhccC--CCCCcEEEEEccchhhhhc--c---cccceEEccCCC
Q 045633 100 KKFFLILDDVWTDD-----------H---SKWEPFHNCLMN--GLCGSRILVTTRKETVARM--M---ESTDVISIKELS 158 (794)
Q Consensus 100 ~~~LlvlDdv~~~~-----------~---~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~--~---~~~~~~~l~~l~ 158 (794)
.+.+|+||+++... . ..+..+...+.. ...+.+||+||........ + ..+..++++..+
T Consensus 276 ~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd 355 (438)
T PTZ00361 276 APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPD 355 (438)
T ss_pred CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCC
Confidence 67899999974210 0 001122222221 1235678888875443221 1 225678999999
Q ss_pred hHhHHHHHHHHhhCC
Q 045633 159 EHECWSLFKRFAFSG 173 (794)
Q Consensus 159 ~~ea~~Lf~~~~~~~ 173 (794)
.++..++|..+....
T Consensus 356 ~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 356 EKTKRRIFEIHTSKM 370 (438)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998876443
No 161
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.51 E-value=0.0064 Score=66.41 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=60.2
Q ss_pred CCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhH
Q 045633 17 QQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTS 96 (794)
Q Consensus 17 ~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 96 (794)
+...-+|..++|++|+||||||..++++ ..| .|+-|++|+..+...+-..|...+........
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------ 384 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA------------ 384 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhcccccc------------
Confidence 3456689999999999999999988873 233 47889999988888887777766543321110
Q ss_pred cCCceEEEEEeCCCCCCccChhhhH
Q 045633 97 IKGKKFFLILDDVWTDDHSKWEPFH 121 (794)
Q Consensus 97 l~~~~~LlvlDdv~~~~~~~~~~l~ 121 (794)
.+++.=+|+|.++.......+.+.
T Consensus 385 -dsrP~CLViDEIDGa~~~~Vdvil 408 (877)
T KOG1969|consen 385 -DSRPVCLVIDEIDGAPRAAVDVIL 408 (877)
T ss_pred -CCCcceEEEecccCCcHHHHHHHH
Confidence 156777899998654433344443
No 162
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=2.3e-05 Score=75.30 Aligned_cols=65 Identities=14% Similarity=0.183 Sum_probs=39.4
Q ss_pred hhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-------CCCCCCcceeeecc
Q 045633 596 CEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-------LGKLPSLEILRIAE 661 (794)
Q Consensus 596 ~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-------l~~L~~L~~L~l~~ 661 (794)
..+..++|.+..|+|+.+..-.. +.-..+..+++|+.|.+++++....+.. ++.|++++.|+=+.
T Consensus 217 ek~se~~p~~~~LnL~~~~idsw-asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGsk 288 (418)
T KOG2982|consen 217 EKGSEPFPSLSCLNLGANNIDSW-ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSK 288 (418)
T ss_pred cccCCCCCcchhhhhcccccccH-HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcc
Confidence 44555666666677765544221 0112234678888888888876665542 56788888887553
No 163
>PLN03150 hypothetical protein; Provisional
Probab=97.50 E-value=0.00013 Score=82.80 Aligned_cols=87 Identities=26% Similarity=0.477 Sum_probs=67.7
Q ss_pred ccceEEEcccCCCccccccCccccCccCCcEEeccC--C-CccCccccCCCccceec--CcCCC-ccCcccccccCCcee
Q 045633 409 CLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--V-EELPETCCELLNLQTLD--CLSLK-RLPQGIGKLINLRHL 482 (794)
Q Consensus 409 ~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~-~~lp~~i~~L~~L~~L~--~~~l~-~lp~~~~~L~~L~~L 482 (794)
.++.|+|++|.+ ...+|..++++.+|++|+|++ + ..+|..++.|.+|+.|+ .+++. .+|..+++|++|++|
T Consensus 419 ~v~~L~L~~n~L---~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGL---RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCc---cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 367788888884 346788888888888888887 4 47888888888888888 45554 578888888899999
Q ss_pred Eecccccc-cCCCCCCC
Q 045633 483 IFDVFGVD-YVPNGFER 498 (794)
Q Consensus 483 ~l~~~~l~-~lp~~i~~ 498 (794)
++++|.+. .+|..++.
T Consensus 496 ~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 496 NLNGNSLSGRVPAALGG 512 (623)
T ss_pred ECcCCcccccCChHHhh
Confidence 98888776 67776654
No 164
>PLN03150 hypothetical protein; Provisional
Probab=97.49 E-value=0.0001 Score=83.75 Aligned_cols=71 Identities=24% Similarity=0.405 Sum_probs=37.2
Q ss_pred CcEEeccC---CCccCccccCCCccceec--CcCCC-ccCcccccccCCceeEecccccc-cCCCCCCCCCCCCccCc
Q 045633 437 LRYLQLSS---VEELPETCCELLNLQTLD--CLSLK-RLPQGIGKLINLRHLIFDVFGVD-YVPNGFERLTGLRTLSG 507 (794)
Q Consensus 437 L~~L~L~~---~~~lp~~i~~L~~L~~L~--~~~l~-~lp~~~~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~~ 507 (794)
++.|+|++ -..+|..+++|.+|+.|+ .+.+. .+|..++.+++|+.|+++.|.+. .+|..+++|++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 44555554 234555555555555555 23332 45555555555555555555554 34555555555555553
No 165
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.46 E-value=0.0055 Score=61.78 Aligned_cols=143 Identities=15% Similarity=0.215 Sum_probs=87.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCC----HH---HHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGE----LN---SLLEY 92 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~----~~---~~~~~ 92 (794)
-+..|.|+|-.|.|||.+.+++++.. . ...+|+++-+.++...++..|+.+......+... .+ +....
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~ 103 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYL 103 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHH
Confidence 34566899999999999999999843 1 2468999999999999999999998522222111 12 22222
Q ss_pred HHh--HcC--CceEEEEEeCCCCCCccChhh-hHhhcc---C-CCCCcEEEEEccchhhhhc---ccc--cceEEccCCC
Q 045633 93 IHT--SIK--GKKFFLILDDVWTDDHSKWEP-FHNCLM---N-GLCGSRILVTTRKETVARM---MES--TDVISIKELS 158 (794)
Q Consensus 93 l~~--~l~--~~~~LlvlDdv~~~~~~~~~~-l~~~l~---~-~~~gs~iivTtr~~~v~~~---~~~--~~~~~l~~l~ 158 (794)
+.+ ..+ ++.++|||||++. ..++++ +...+. . .....-+|+++-....... ++. ..++..+.-+
T Consensus 104 l~q~~~~t~~d~~~~liLDnad~--lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys 181 (438)
T KOG2543|consen 104 LVQWPAATNRDQKVFLILDNADA--LRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYS 181 (438)
T ss_pred HHhhHHhhccCceEEEEEcCHHh--hhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCC
Confidence 333 112 4589999999944 233333 111111 1 1112334555443222211 222 3467788889
Q ss_pred hHhHHHHHHHH
Q 045633 159 EHECWSLFKRF 169 (794)
Q Consensus 159 ~~ea~~Lf~~~ 169 (794)
.+|-.+++.+.
T Consensus 182 ~~e~~~Il~~~ 192 (438)
T KOG2543|consen 182 VEETQVILSRD 192 (438)
T ss_pred HHHHHHHHhcC
Confidence 99999988763
No 166
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.44 E-value=0.00062 Score=75.84 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++..++..... +....+++.|+|+.|+||||+++.++.
T Consensus 93 i~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 93 IEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred HHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455666554321 222346899999999999999999987
No 167
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.44 E-value=0.0023 Score=67.87 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=72.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
.++-|.++|++|+|||++|+++++ .....| +.+.. .. +.....+. ....+.+.+......
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~--~l~~~f---i~i~~------s~----l~~k~~ge-----~~~~lr~lf~~A~~~ 237 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAH--HTTATF---IRVVG------SE----FVQKYLGE-----GPRMVRDVFRLAREN 237 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--hcCCCE---EEEeh------HH----HHHHhcch-----hHHHHHHHHHHHHhc
Confidence 456788999999999999999998 333222 22211 11 11111111 111112222223345
Q ss_pred ceEEEEEeCCCCCC------c----c----ChhhhHhhccC--CCCCcEEEEEccchhhhhc--c---cccceEEccCCC
Q 045633 100 KKFFLILDDVWTDD------H----S----KWEPFHNCLMN--GLCGSRILVTTRKETVARM--M---ESTDVISIKELS 158 (794)
Q Consensus 100 ~~~LlvlDdv~~~~------~----~----~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~--~---~~~~~~~l~~l~ 158 (794)
.+.+|++|+++..- . . .+..+...+.. ...+..||+||........ . ..+..++++..+
T Consensus 238 ~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~ 317 (398)
T PTZ00454 238 APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 317 (398)
T ss_pred CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcC
Confidence 68999999985310 0 0 11222222222 1235678888875443221 1 235678999999
Q ss_pred hHhHHHHHHHHhhC
Q 045633 159 EHECWSLFKRFAFS 172 (794)
Q Consensus 159 ~~ea~~Lf~~~~~~ 172 (794)
.++..++|......
T Consensus 318 ~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 318 RRQKRLIFQTITSK 331 (398)
T ss_pred HHHHHHHHHHHHhc
Confidence 99988999876543
No 168
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.42 E-value=0.00015 Score=49.55 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=27.6
Q ss_pred CccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccC
Q 045633 408 TCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELP 449 (794)
Q Consensus 408 ~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp 449 (794)
++|++|++++|+ +..+|..+++|++|++|++++ +.++|
T Consensus 1 ~~L~~L~l~~N~----i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ----ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-----SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCC----CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 367888888888 777877788888888888887 55543
No 169
>PRK04296 thymidine kinase; Provisional
Probab=97.41 E-value=0.0003 Score=66.78 Aligned_cols=113 Identities=13% Similarity=0.026 Sum_probs=62.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHhHcCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN--LGELNSLLEYIHTSIKG 99 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 99 (794)
.++.|+|..|.||||+|..++. +...+-..++.+.- ..+.+.....++.+++..... ....++....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFKP--AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEec--cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4678999999999999987776 44333334444421 111122223344555432211 2234445555554 333
Q ss_pred ceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh
Q 045633 100 KKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET 141 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 141 (794)
+.-+||+|.+..-+.++...+...+. ..|..||+|.++..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 45689999994432233334444332 34778999998754
No 170
>PRK12377 putative replication protein; Provisional
Probab=97.41 E-value=0.00023 Score=69.93 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=57.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
...+.|+|..|+|||.||.++++ ........++++++. ++...+-...... ..... +.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~------~l~~~l~~~~~~~----~~~~~----~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP------DVMSRLHESYDNG----QSGEK----FLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH------HHHHHHHHHHhcc----chHHH----HHHHh-cC
Confidence 35688999999999999999998 444444456777653 3444443333211 11111 22222 35
Q ss_pred eEEEEEeCCCCCCccChh--hhHhhccCCC-CCcEEEEEccc
Q 045633 101 KFFLILDDVWTDDHSKWE--PFHNCLMNGL-CGSRILVTTRK 139 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~~~--~l~~~l~~~~-~gs~iivTtr~ 139 (794)
--|||+||+.......|. .+...+.... +.--+||||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 678999999543333343 2333333322 22347888774
No 171
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=6.4e-05 Score=85.01 Aligned_cols=127 Identities=22% Similarity=0.210 Sum_probs=87.2
Q ss_pred cCcceEEEEEecccc--cCccccc-CCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccc
Q 045633 355 QEKLRHLTLMLGLRA--KFPVSIF-DAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGL 431 (794)
Q Consensus 355 ~~~~r~l~l~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i 431 (794)
..++++|.+.+...- ..+..++ .+|.|++|.+.+.... ...+...+.++++|+.||+++++ +..+ ..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~----~~dF~~lc~sFpNL~sLDIS~Tn----I~nl-~GI 191 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD----NDDFSQLCASFPNLRSLDISGTN----ISNL-SGI 191 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec----chhHHHHhhccCccceeecCCCC----ccCc-HHH
Confidence 445666666554321 1233333 5899999999886322 22245668899999999999999 7777 779
Q ss_pred cCccCCcEEeccC--CCccC--ccccCCCccceec--CcCCCccCcc-------cccccCCceeEecccccc
Q 045633 432 ENLIHLRYLQLSS--VEELP--ETCCELLNLQTLD--CLSLKRLPQG-------IGKLINLRHLIFDVFGVD 490 (794)
Q Consensus 432 ~~l~~L~~L~L~~--~~~lp--~~i~~L~~L~~L~--~~~l~~lp~~-------~~~L~~L~~L~l~~~~l~ 490 (794)
++|++|+.|.+.+ ++.-+ ..+-+|++|++|| ......-+.. -..|++||.||.+++.+.
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9999999999999 44333 2577899999999 3222222211 124899999999877654
No 172
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.40 E-value=0.00018 Score=67.14 Aligned_cols=101 Identities=25% Similarity=0.317 Sum_probs=51.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
-+-+.|+|..|+|||.||.++.+ +....=..+.|++.. +++.. +..... ....++....+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~~~------~L~~~----l~~~~~-~~~~~~~~~~l~-----~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFITAS------DLLDE----LKQSRS-DGSYEELLKRLK-----R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEHH------HHHHH----HHCCHC-CTTHCHHHHHHH-----T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeEeecC------ceecc----cccccc-ccchhhhcCccc-----c
Confidence 35588999999999999998887 333332346777642 34333 332211 122333333332 2
Q ss_pred eEEEEEeCCCCCCccChhh--hHhhccCCCCCcEEEEEccc
Q 045633 101 KFFLILDDVWTDDHSKWEP--FHNCLMNGLCGSRILVTTRK 139 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~~~~--l~~~l~~~~~gs~iivTtr~ 139 (794)
-=||||||+.......|.. +...+........+||||..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 3578899995543333322 22222222112258888884
No 173
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.40 E-value=0.001 Score=77.31 Aligned_cols=145 Identities=21% Similarity=0.224 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccc-----cC-CeEEE-EEecCCCCHHHHHHHHHH
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIE-----NF-DKRIW-VCVSDPFDEFRIAKAIIE 74 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~-----~f-~~~~~-v~~~~~~~~~~~~~~i~~ 74 (794)
|.+++++.|... ...-+.++|++|+|||++|+.+++ ++.. .+ +..+| ++.+ . +..
T Consensus 190 ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~--~~~~~~~p~~l~~~~~~~~~~~------~----l~a 251 (731)
T TIGR02639 190 ELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLAL--RIAEGKVPENLKNAKIYSLDMG------S----LLA 251 (731)
T ss_pred HHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHH--HHHhCCCchhhcCCeEEEecHH------H----Hhh
Confidence 445666666543 223356999999999999999887 3321 11 22333 2211 1 110
Q ss_pred HhcCCCCCCCCHHHHHHHHHhHc-CCceEEEEEeCCCCCC---------ccChhhhHhhccCCCCCcEEEEEccchhhhh
Q 045633 75 GLEGSLPNLGELNSLLEYIHTSI-KGKKFFLILDDVWTDD---------HSKWEPFHNCLMNGLCGSRILVTTRKETVAR 144 (794)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 144 (794)
+. ....+.++....+.+.+ +.++.+|++|+++.-. .+..+.+...+.. + .-++|-+|...+...
T Consensus 252 ---~~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 252 ---GT-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTTYEEYKN 325 (731)
T ss_pred ---hc-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecCHHHHHH
Confidence 00 01123333344444333 2457899999985311 1111223433332 1 235665555432211
Q ss_pred c-------ccccceEEccCCChHhHHHHHHHHh
Q 045633 145 M-------MESTDVISIKELSEHECWSLFKRFA 170 (794)
Q Consensus 145 ~-------~~~~~~~~l~~l~~~ea~~Lf~~~~ 170 (794)
. ......+++++++.++..++++...
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 1224578999999999999998654
No 174
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.39 E-value=0.0068 Score=62.99 Aligned_cols=202 Identities=13% Similarity=0.131 Sum_probs=120.3
Q ss_pred CHHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHH-HHHhCCccccccCCeEEEEEecCC---CCHHHHHHHHHHHh
Q 045633 1 EEKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLA-QFAYNDKDVIENFDKRIWVCVSDP---FDEFRIAKAIIEGL 76 (794)
Q Consensus 1 ~e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~~~~v~~~~~---~~~~~~~~~i~~~l 76 (794)
|+.++|..||.+..+ ..|.|.||-|.||++|+ .++..+. ..+..+++.+- .+-..+.+.++.++
T Consensus 3 e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar~D~~~I~~lA~qv 70 (431)
T PF10443_consen 3 EAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKARGDAAFIKNLASQV 70 (431)
T ss_pred hHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhccChHHHHHHHHHhc
Confidence 356889999998743 58999999999999999 7776532 23777776432 33344555555554
Q ss_pred cC-----------------------CCCCC-CCHH----HHH----HHHHh-------------------Hc---CCceE
Q 045633 77 EG-----------------------SLPNL-GELN----SLL----EYIHT-------------------SI---KGKKF 102 (794)
Q Consensus 77 ~~-----------------------~~~~~-~~~~----~~~----~~l~~-------------------~l---~~~~~ 102 (794)
+= +..+. ...+ .+. ..+++ +| -.+|=
T Consensus 71 GY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~P 150 (431)
T PF10443_consen 71 GYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRP 150 (431)
T ss_pred CCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCC
Confidence 31 11111 1111 111 11111 01 12367
Q ss_pred EEEEeCCCCCCcc---ChhhhHh---hccCCCCCcEEEEEccchhhhh----cc--cccceEEccCCChHhHHHHHHHHh
Q 045633 103 FLILDDVWTDDHS---KWEPFHN---CLMNGLCGSRILVTTRKETVAR----MM--ESTDVISIKELSEHECWSLFKRFA 170 (794)
Q Consensus 103 LlvlDdv~~~~~~---~~~~l~~---~l~~~~~gs~iivTtr~~~v~~----~~--~~~~~~~l~~l~~~ea~~Lf~~~~ 170 (794)
+||+||....... -|+.+.. .+. ..+=.+||++|-+..... .+ ...+.+.+...+++.|..+...+.
T Consensus 151 VVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 151 VVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred EEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 8999998442111 1122211 111 223468999998754433 22 335678999999999999998877
Q ss_pred hCCCCC-------------CC---hhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCCCHHH
Q 045633 171 FSGRSP-------------TD---CEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREE 215 (794)
Q Consensus 171 ~~~~~~-------------~~---~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~ 215 (794)
...... .. ......-....++.+||--.-|+.+++.++.+.++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 543111 00 0122334556788899999999999999988776543
No 175
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.39 E-value=0.00079 Score=61.94 Aligned_cols=118 Identities=17% Similarity=0.160 Sum_probs=66.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccc--------------------cCCeEEEEEecCCCCHHHHHHHHHHHhcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIE--------------------NFDKRIWVCVSDPFDEFRIAKAIIEGLEGS 79 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~--------------------~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~ 79 (794)
-.+.+.++|+.|+||+|+|..+++. +-. ....+.|+.-....
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~--ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~---------------- 79 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARA--LLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK---------------- 79 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHH--HC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS----------------
T ss_pred cceeEEEECCCCCCHHHHHHHHHHH--HcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc----------------
Confidence 3456789999999999999877762 211 12223333222110
Q ss_pred CCCCCCHHHHHHHHHhHc-----CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hh-hcccccceE
Q 045633 80 LPNLGELNSLLEYIHTSI-----KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VA-RMMESTDVI 152 (794)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~-~~~~~~~~~ 152 (794)
..-.++++. .+.+.+ .+++-++|+|+++........++...+.....++++|++|++.. +. ........+
T Consensus 80 --~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i 156 (162)
T PF13177_consen 80 --KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVI 156 (162)
T ss_dssp --SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEE
T ss_pred --chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEE
Confidence 011223322 222222 34677899999988777888888888888778899998888754 22 222334566
Q ss_pred EccCCC
Q 045633 153 SIKELS 158 (794)
Q Consensus 153 ~l~~l~ 158 (794)
.+.+++
T Consensus 157 ~~~~ls 162 (162)
T PF13177_consen 157 RFRPLS 162 (162)
T ss_dssp EE----
T ss_pred ecCCCC
Confidence 666553
No 176
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.39 E-value=0.00079 Score=65.06 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=28.6
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEe
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV 59 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~ 59 (794)
.++|+|..|.||||+++.+.. .....|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 356999999999999999887 57778877776643
No 177
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.37 E-value=3.2e-05 Score=83.73 Aligned_cols=97 Identities=25% Similarity=0.304 Sum_probs=59.2
Q ss_pred hccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCC
Q 045633 404 FDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINL 479 (794)
Q Consensus 404 ~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L 479 (794)
+..++.|..|++.+|. +..+...+..+.+|++|++++ |..+ ..+..|..|+.|+ .+.+..++. +..+++|
T Consensus 91 l~~~~~l~~l~l~~n~----i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK----IEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISG-LESLKSL 164 (414)
T ss_pred cccccceeeeeccccc----hhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccC-Cccchhh
Confidence 4566677777777777 555544466677777777776 5555 3455555666666 445555432 5556777
Q ss_pred ceeEecccccccCCCC-CCCCCCCCccC
Q 045633 480 RHLIFDVFGVDYVPNG-FERLTGLRTLS 506 (794)
Q Consensus 480 ~~L~l~~~~l~~lp~~-i~~l~~L~~L~ 506 (794)
+.++++.|.+..+... ...+.+|+.+.
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~ 192 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELISLEELD 192 (414)
T ss_pred hcccCCcchhhhhhhhhhhhccchHHHh
Confidence 7777777766666443 35555555554
No 178
>CHL00176 ftsH cell division protein; Validated
Probab=97.35 E-value=0.0025 Score=71.62 Aligned_cols=150 Identities=14% Similarity=0.165 Sum_probs=81.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
.+-|.++|++|+|||++|++++. +.. +-|+.++.. +.. ....+ .........+.+..+..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~--e~~-----~p~i~is~s----~f~----~~~~g-----~~~~~vr~lF~~A~~~~ 275 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAG--EAE-----VPFFSISGS----EFV----EMFVG-----VGAARVRDLFKKAKENS 275 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HhC-----CCeeeccHH----HHH----HHhhh-----hhHHHHHHHHHHHhcCC
Confidence 45688999999999999999987 322 223332211 111 11100 01122233344444567
Q ss_pred eEEEEEeCCCCCC----------ccC----hhhhHhhccC--CCCCcEEEEEccchhhhhc--c---cccceEEccCCCh
Q 045633 101 KFFLILDDVWTDD----------HSK----WEPFHNCLMN--GLCGSRILVTTRKETVARM--M---ESTDVISIKELSE 159 (794)
Q Consensus 101 ~~LlvlDdv~~~~----------~~~----~~~l~~~l~~--~~~gs~iivTtr~~~v~~~--~---~~~~~~~l~~l~~ 159 (794)
+.+|++|+++.-. ... +..+...+.. ...+..||.||........ . ..+..+.++..+.
T Consensus 276 P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~ 355 (638)
T CHL00176 276 PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR 355 (638)
T ss_pred CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCH
Confidence 8999999995321 011 1222222221 2235566767765432221 1 2246788999999
Q ss_pred HhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCC
Q 045633 160 HECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKG 195 (794)
Q Consensus 160 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 195 (794)
++-.++++.++..... .. ......+++.+.|
T Consensus 356 ~~R~~IL~~~l~~~~~-~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 356 EGRLDILKVHARNKKL-SP----DVSLELIARRTPG 386 (638)
T ss_pred HHHHHHHHHHHhhccc-ch----hHHHHHHHhcCCC
Confidence 9999999887754221 11 1224556666666
No 179
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0047 Score=63.97 Aligned_cols=92 Identities=10% Similarity=0.029 Sum_probs=64.7
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhhc-ccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VARM-MESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.+++-++|+|+++.........+...+..-..++.+|.+|.+.. +... ......+.+.+++.+++.+.+.... +
T Consensus 106 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~---~- 181 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV---T- 181 (334)
T ss_pred cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc---C-
Confidence 46778999999988777777888888877666777777766543 3322 3445678999999999998886532 1
Q ss_pred CCChhHHHHHHHHHHhhcCCCch
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLPL 198 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~Pl 198 (794)
.. .+.+..++..++|.|.
T Consensus 182 ~~-----~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 182 MS-----QDALLAALRLSAGAPG 199 (334)
T ss_pred CC-----HHHHHHHHHHcCCCHH
Confidence 11 2235677889999995
No 180
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0034 Score=62.78 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=90.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc-
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI- 97 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 97 (794)
..++=|.+||++|.|||-||++|++ +....| +.+.. .++.+..-+. -..+++.+.+.-
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Irvvg--------SElVqKYiGE------GaRlVRelF~lAr 241 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVG--------SELVQKYIGE------GARLVRELFELAR 241 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEecc--------HHHHHHHhcc------chHHHHHHHHHHh
Confidence 4566788999999999999999999 444443 33322 1222222111 112233333332
Q ss_pred CCceEEEEEeCCCCC-----------C---ccChhhhHhhccCCC--CCcEEEEEccchhhhhc-----ccccceEEccC
Q 045633 98 KGKKFFLILDDVWTD-----------D---HSKWEPFHNCLMNGL--CGSRILVTTRKETVARM-----MESTDVISIKE 156 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~-----------~---~~~~~~l~~~l~~~~--~gs~iivTtr~~~v~~~-----~~~~~~~~l~~ 156 (794)
...+.+|++|.++.. + +..+-++...+..+. ...|||..|.-.++... -.-+..++++.
T Consensus 242 ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfpl 321 (406)
T COG1222 242 EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPL 321 (406)
T ss_pred hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCC
Confidence 346899999998431 0 112334445555443 35689988876554331 12367889887
Q ss_pred CChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCc----hHHHHHHhhh
Q 045633 157 LSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLP----LAAKTIGSLL 207 (794)
Q Consensus 157 l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----lal~~~~~~l 207 (794)
-+.+.-.++|+-++..... ...-.++. +++.+.|.- .|+.+=|+++
T Consensus 322 Pd~~gR~~Il~IHtrkM~l-~~dvd~e~----la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 322 PDEEGRAEILKIHTRKMNL-ADDVDLEL----LARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred CCHHHHHHHHHHHhhhccC-ccCcCHHH----HHHhcCCCchHHHHHHHHHHhHH
Confidence 6777777888877654332 22234444 444455543 3444444444
No 181
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.32 E-value=0.0093 Score=62.56 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 4 NTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 4 ~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+.+.+.+.... .....+|+|.|.-|+||||+.+.+.+
T Consensus 6 ~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~ 42 (325)
T PF07693_consen 6 KALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKE 42 (325)
T ss_pred HHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555555432 25789999999999999999998887
No 182
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.31 E-value=0.00069 Score=66.37 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=57.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
.+.+.++|.+|+|||+||.++++ .....-..++++++ .++...+-...... ....+ .+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it~------~~l~~~l~~~~~~~---~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIITV------ADIMSAMKDTFSNS---ETSEE----QLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEH------HHHHHHHHHHHhhc---cccHH----HHHHHhc-c
Confidence 45688999999999999999998 34333345677743 34444443333211 11122 2333344 3
Q ss_pred eEEEEEeCCCCCCccChhh--hHhhccCCC-CCcEEEEEccc
Q 045633 101 KFFLILDDVWTDDHSKWEP--FHNCLMNGL-CGSRILVTTRK 139 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~~~~--l~~~l~~~~-~gs~iivTtr~ 139 (794)
.=+||+||+.......|+. +...+.... ..-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4588889996554444543 222222221 23347888774
No 183
>PRK09183 transposase/IS protein; Provisional
Probab=97.31 E-value=0.00078 Score=67.25 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=51.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
..|.|+|+.|+|||+||..+.. .....-..+.|++. .++...+...... ... ...+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~--~a~~~G~~v~~~~~------~~l~~~l~~a~~~-----~~~---~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY--EAVRAGIKVRFTTA------ADLLLQLSTAQRQ-----GRY---KTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH--HHHHcCCeEEEEeH------HHHHHHHHHHHHC-----CcH---HHHHHHHh-cCC
Confidence 4677999999999999999876 22222234556542 2333333222111 111 12222221 345
Q ss_pred EEEEEeCCCCCCccChh--hhHhhccCC-CCCcEEEEEccc
Q 045633 102 FFLILDDVWTDDHSKWE--PFHNCLMNG-LCGSRILVTTRK 139 (794)
Q Consensus 102 ~LlvlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 139 (794)
-++|+||+.......+. .+...+... ..++ +||||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 69999999543222222 233333222 2344 8888874
No 184
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.31 E-value=4.7e-05 Score=82.45 Aligned_cols=95 Identities=28% Similarity=0.393 Sum_probs=49.3
Q ss_pred cCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCce
Q 045633 406 QLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRH 481 (794)
Q Consensus 406 ~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~ 481 (794)
.+..++.+.+..+. +...-..++.+.+|.+|++.+ ++.+...+..+.+|++|+ .+.+.++. ++..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~----i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL----IAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhh----hhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhh
Confidence 34555666666666 444333355666677776665 555543355555555555 34444442 2445555555
Q ss_pred eEecccccccCCCCCCCCCCCCccC
Q 045633 482 LIFDVFGVDYVPNGFERLTGLRTLS 506 (794)
Q Consensus 482 L~l~~~~l~~lp~~i~~l~~L~~L~ 506 (794)
|++.+|.+..++ ++..+++|+.++
T Consensus 145 L~l~~N~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 145 LNLSGNLISDIS-GLESLKSLKLLD 168 (414)
T ss_pred heeccCcchhcc-CCccchhhhccc
Confidence 555555555442 233344444433
No 185
>PRK06526 transposase; Provisional
Probab=97.28 E-value=0.00045 Score=68.47 Aligned_cols=101 Identities=19% Similarity=0.164 Sum_probs=52.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
.+-|.|+|++|+|||+||.++.. +....-..+.|++ ..++...+..... . ... ...+.+. .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~--~a~~~g~~v~f~t------~~~l~~~l~~~~~----~-~~~---~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGI--RACQAGHRVLFAT------AAQWVARLAAAHH----A-GRL---QAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHH--HHHHCCCchhhhh------HHHHHHHHHHHHh----c-CcH---HHHHHHh--cc
Confidence 34578999999999999998877 3322222344432 3344444433211 0 111 1223222 23
Q ss_pred eEEEEEeCCCCCCccCh--hhhHhhccCC-CCCcEEEEEccch
Q 045633 101 KFFLILDDVWTDDHSKW--EPFHNCLMNG-LCGSRILVTTRKE 140 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~~--~~l~~~l~~~-~~gs~iivTtr~~ 140 (794)
.-+||+||+.......+ +.+...+... ..++ +|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 46899999954322222 1233333221 2244 88888853
No 186
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.0073 Score=62.02 Aligned_cols=96 Identities=14% Similarity=0.170 Sum_probs=63.3
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhh-cccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVAR-MMESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.+++-++|+|+++..+......+...+..-. .+.+|++|.+ ..+.. .......+.+.+++.++..+.+.+.......
T Consensus 122 ~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~ 200 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL 200 (314)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc
Confidence 4667899999997777667777777776544 4455555544 33332 2344678999999999999999876421110
Q ss_pred CCChhHHHHHHHHHHhhcCCCchHHH
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
......++..++|-|....
T Consensus 201 -------~~~~~~l~~~a~Gs~~~al 219 (314)
T PRK07399 201 -------NINFPELLALAQGSPGAAI 219 (314)
T ss_pred -------hhHHHHHHHHcCCCHHHHH
Confidence 1113467888999996543
No 187
>PRK04132 replication factor C small subunit; Provisional
Probab=97.27 E-value=0.0057 Score=70.28 Aligned_cols=151 Identities=12% Similarity=0.023 Sum_probs=96.6
Q ss_pred cCCCcHHHHHHHHhCCccccccC-CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCceEEEEEe
Q 045633 29 MGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKKFFLILD 107 (794)
Q Consensus 29 ~gGiGKTtLa~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlD 107 (794)
|-++||||+|..++++. ....+ ..++-++++...+...+. +++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINVIR-EKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 78899999999999831 12222 246778887755555433 333332211110 01245799999
Q ss_pred CCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhhc-ccccceEEccCCChHhHHHHHHHHhhCCCCCCChhHHHHH
Q 045633 108 DVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VARM-MESTDVISIKELSEHECWSLFKRFAFSGRSPTDCEQLEEI 185 (794)
Q Consensus 108 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~ 185 (794)
+++.....+...+...+......+++|.+|.+.. +... ......+.+.+++.++..+.+.+.+...+.... .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~----~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC----HHH
Confidence 9988777777778877776555677777766543 3222 234578999999999998888776543332211 345
Q ss_pred HHHHHhhcCCCchH
Q 045633 186 GRKIVGKCKGLPLA 199 (794)
Q Consensus 186 ~~~i~~~~~g~Pla 199 (794)
...|++.++|-+..
T Consensus 714 L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 714 LQAILYIAEGDMRR 727 (846)
T ss_pred HHHHHHHcCCCHHH
Confidence 67788999998743
No 188
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.0079 Score=61.46 Aligned_cols=163 Identities=10% Similarity=0.065 Sum_probs=94.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCC-----C---CCCCCHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-----L---PNLGELNSLLE 91 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~-----~---~~~~~~~~~~~ 91 (794)
-.+.+-++|+.|+||+++|+.+++. +-..-.. ....+....-+.+...-..+ . ...-.++++.+
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~--llC~~~~------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~ 95 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRA--LLCQNYQ------SEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQ 95 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHH--HcCCCCC------CCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHH
Confidence 4567889999999999999887762 2111000 00011111111111110000 0 00112333322
Q ss_pred HHHhHc-----CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhh-hcccccceEEccCCChHhHHH
Q 045633 92 YIHTSI-----KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVA-RMMESTDVISIKELSEHECWS 164 (794)
Q Consensus 92 ~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~-~~~~~~~~~~l~~l~~~ea~~ 164 (794)
+.+.+ .+++-++|+|+++.........+...+..-.+++.+|++|.+. .+. ........+.+.+++.+++.+
T Consensus 96 -l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~ 174 (319)
T PRK06090 96 -CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQ 174 (319)
T ss_pred -HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHH
Confidence 22222 3556788999998777777788888887766677777766654 333 333446688999999999999
Q ss_pred HHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHH
Q 045633 165 LFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTI 203 (794)
Q Consensus 165 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 203 (794)
.+.... . . .+..+++.++|.|+....+
T Consensus 175 ~L~~~~----~-~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 175 WLKGQG----I-T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHcC----C-c-------hHHHHHHHcCCCHHHHHHH
Confidence 886531 1 1 1245678899999765433
No 189
>PRK08118 topology modulation protein; Reviewed
Probab=97.26 E-value=0.00011 Score=67.86 Aligned_cols=34 Identities=35% Similarity=0.595 Sum_probs=26.1
Q ss_pred EEEEEecCCCcHHHHHHHHhCCcccc-ccCCeEEE
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVI-ENFDKRIW 56 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~~ 56 (794)
.|.|+|++|+||||+|+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999853332 34566665
No 190
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.26 E-value=0.00014 Score=65.54 Aligned_cols=89 Identities=24% Similarity=0.114 Sum_probs=47.1
Q ss_pred EEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCceEE
Q 045633 24 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKKFF 103 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 103 (794)
|.|+|+.|+|||++|+.+++ ... ..+.-+.++...+..++....--.-........... ..+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~---~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~---~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLG---RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLV---RAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHT---CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCC---TTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhh---cceEEEEeccccccccceeeeeeccccccccccccc---ccc-----cceeE
Confidence 66999999999999999987 331 234456677666666553322111000000000000 000 17899
Q ss_pred EEEeCCCCCCccChhhhHhhcc
Q 045633 104 LILDDVWTDDHSKWEPFHNCLM 125 (794)
Q Consensus 104 lvlDdv~~~~~~~~~~l~~~l~ 125 (794)
+|||++.......+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999996544444444544443
No 191
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.008 Score=62.09 Aligned_cols=91 Identities=11% Similarity=0.143 Sum_probs=63.0
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhh-cccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVAR-MMESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.+++-++|+|+++.........+...+..-.+++.+|.+|.+. .+.. .......+.+.+++.++..+.+.... .
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C
Confidence 3566788999998888888888888888766777666666553 3332 23445688999999999999887641 1
Q ss_pred CCChhHHHHHHHHHHhhcCCCchHH
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~Plal 200 (794)
. . ...++..++|.|...
T Consensus 206 -~---~----~~~~l~~~~Gsp~~A 222 (342)
T PRK06964 206 -A---D----ADALLAEAGGAPLAA 222 (342)
T ss_pred -C---h----HHHHHHHcCCCHHHH
Confidence 1 1 122466789999643
No 192
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.24 E-value=0.0017 Score=76.34 Aligned_cols=144 Identities=19% Similarity=0.198 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccc-----cC-CeEEEEEecCCCCHHHHHHHHHHH
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIE-----NF-DKRIWVCVSDPFDEFRIAKAIIEG 75 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~-----~f-~~~~~v~~~~~~~~~~~~~~i~~~ 75 (794)
|.+++++.|.... ..-+.++|++|+|||++|+.++. ++.. .. +..+|. + +...+
T Consensus 187 ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~--~i~~~~vp~~l~~~~i~~-l----~~~~l------- 246 (821)
T CHL00095 187 EIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQ--RIVNRDVPDILEDKLVIT-L----DIGLL------- 246 (821)
T ss_pred HHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEE-e----eHHHH-------
Confidence 5667777776542 22346999999999999998887 3321 11 233442 1 11111
Q ss_pred hcCCCCCCCCHHHHHHHHHhHc-CCceEEEEEeCCCCC-------CccChhh-hHhhccCCCCCcEEEEEccchhhhhc-
Q 045633 76 LEGSLPNLGELNSLLEYIHTSI-KGKKFFLILDDVWTD-------DHSKWEP-FHNCLMNGLCGSRILVTTRKETVARM- 145 (794)
Q Consensus 76 l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~-------~~~~~~~-l~~~l~~~~~gs~iivTtr~~~v~~~- 145 (794)
+.+.. ...+.++....+.+.+ +.++.+|++|+++.- ....... +...+.. + .-++|.+|........
T Consensus 247 ~ag~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g-~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 247 LAGTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-G-ELQCIGATTLDEYRKHI 323 (821)
T ss_pred hccCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-C-CcEEEEeCCHHHHHHHH
Confidence 11111 1123333333333333 356899999998421 0011222 3333322 2 3466666665443221
Q ss_pred ------ccccceEEccCCChHhHHHHHHH
Q 045633 146 ------MESTDVISIKELSEHECWSLFKR 168 (794)
Q Consensus 146 ------~~~~~~~~l~~l~~~ea~~Lf~~ 168 (794)
......+.+.+.+.++...+++.
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 12245678899999998888764
No 193
>PRK06921 hypothetical protein; Provisional
Probab=97.23 E-value=0.0014 Score=65.71 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=28.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCcccccc-CCeEEEEEe
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIEN-FDKRIWVCV 59 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~~v~~ 59 (794)
...+.++|..|+|||.||.++++ .+... -..|+|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 45688999999999999999998 44443 345777764
No 194
>PRK10536 hypothetical protein; Provisional
Probab=97.19 E-value=0.0011 Score=64.30 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=60.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEE----ecC-----CCCHH----HHHHHHHHHhcCCCCCCCCHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC----VSD-----PFDEF----RIAKAIIEGLEGSLPNLGELNS 88 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~----~~~-----~~~~~----~~~~~i~~~l~~~~~~~~~~~~ 88 (794)
.+|.+.|++|.|||+||.++..+.-....|+.++.+. .++ +.+.. ..++.+...+..-... ...+.
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~-~~~~~ 153 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGA-SFMQY 153 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhCh-HHHHH
Confidence 4899999999999999988776322234455433321 111 11121 1222222222211000 01111
Q ss_pred HHH--------HHHhHcCCce---EEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhh
Q 045633 89 LLE--------YIHTSIKGKK---FFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETV 142 (794)
Q Consensus 89 ~~~--------~l~~~l~~~~---~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 142 (794)
... .-..+++++. -+||+|++...+..+...+.. ..+.+|++|+|--..++
T Consensus 154 ~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 154 CLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RLGENVTVIVNGDITQC 215 (262)
T ss_pred HHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hcCCCCEEEEeCChhhc
Confidence 100 0113445654 599999996655544444443 44568999998775443
No 195
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.14 E-value=0.0018 Score=74.22 Aligned_cols=147 Identities=18% Similarity=0.225 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCcccccc-----C-CeEEEEEecCCCCHHHHHHHHHHH
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN-----F-DKRIWVCVSDPFDEFRIAKAIIEG 75 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-----f-~~~~~v~~~~~~~~~~~~~~i~~~ 75 (794)
+..++++.|.... ..-+.++|++|+|||++|+.+++ ++... + +..+|. . +... +
T Consensus 194 ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~--~i~~~~vP~~l~~~~~~~-l----~~~~----l--- 253 (758)
T PRK11034 194 ELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAW--RIVQGDVPEVMADCTIYS-L----DIGS----L--- 253 (758)
T ss_pred HHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHH--HHHhcCCCchhcCCeEEe-c----cHHH----H---
Confidence 4556666665532 22345899999999999998886 22111 1 333332 1 1111 1
Q ss_pred hcCCCCCCCCHHHHHHHHHhHc-CCceEEEEEeCCCCC--------CccChhhhHhhccCCCCCcEEEEEccchhhhhc-
Q 045633 76 LEGSLPNLGELNSLLEYIHTSI-KGKKFFLILDDVWTD--------DHSKWEPFHNCLMNGLCGSRILVTTRKETVARM- 145 (794)
Q Consensus 76 l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~- 145 (794)
+.+.. ...+.+.....+.+.+ +.++.+|++|+++.- ...+...+...+...+ .-++|-+|........
T Consensus 254 laG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 254 LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIF 331 (758)
T ss_pred hcccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHh
Confidence 11110 1112233333333333 345789999999531 1112222222222222 3455655554432111
Q ss_pred ------ccccceEEccCCChHhHHHHHHHHh
Q 045633 146 ------MESTDVISIKELSEHECWSLFKRFA 170 (794)
Q Consensus 146 ------~~~~~~~~l~~l~~~ea~~Lf~~~~ 170 (794)
......+.+++++.+++.+++....
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1224579999999999999997643
No 196
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.11 E-value=0.00012 Score=82.72 Aligned_cols=93 Identities=25% Similarity=0.125 Sum_probs=61.3
Q ss_pred cccccCCceeEecccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCCh--hh
Q 045633 473 IGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAA--DE 550 (794)
Q Consensus 473 ~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~--~~ 550 (794)
..++++|..||++++++..+ .++++|++|+.|.+....- .....+..+-+|++|+ .|+++.-...... ..
T Consensus 169 c~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~------e~~~~l~~LF~L~~L~-vLDIS~~~~~~~~~ii~ 240 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEF------ESYQDLIDLFNLKKLR-VLDISRDKNNDDTKIIE 240 (699)
T ss_pred hhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCC------CchhhHHHHhcccCCC-eeeccccccccchHHHH
Confidence 34567788888888888777 7788888888887655443 3344566677777777 7877644332221 12
Q ss_pred hhhccccCCCCCceEEEEecCCC
Q 045633 551 AKNAHLEKKKNLVHLILDFTKRE 573 (794)
Q Consensus 551 ~~~~~l~~~~~L~~L~l~~~~~~ 573 (794)
...+.-..+++|+.|+.|++...
T Consensus 241 qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 241 QYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHHHhcccCccccEEecCCcchh
Confidence 22333445889999999987654
No 197
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.09 E-value=0.0037 Score=73.49 Aligned_cols=111 Identities=18% Similarity=0.274 Sum_probs=58.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC-C
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK-G 99 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~ 99 (794)
..++.++|+.|+|||++|+.+++ .....-...+.++++.-.. ......+.+..+.....++ ...+....+ .
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~--~l~~~~~~~i~id~se~~~-----~~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~ 669 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALAN--FMFDSDDAMVRIDMSEFME-----KHSVSRLVGAPPGYVGYEE-GGYLTEAVRRR 669 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HhhcCCCcEEEEEhHHhhh-----hhhHHHHhCCCCcccccch-hHHHHHHHHhC
Confidence 35788999999999999999886 2222223345555543211 1112223222222111111 111222221 2
Q ss_pred ceEEEEEeCCCCCCccChhhhHhhccCC----C-------CCcEEEEEccc
Q 045633 100 KKFFLILDDVWTDDHSKWEPFHNCLMNG----L-------CGSRILVTTRK 139 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~----~-------~gs~iivTtr~ 139 (794)
..-+|+||++...+...+..+...+..+ + ..+-||+||.-
T Consensus 670 p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 670 PYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred CCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 3369999999766666666666655432 1 12337777775
No 198
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.07 E-value=0.0028 Score=66.60 Aligned_cols=133 Identities=17% Similarity=0.120 Sum_probs=77.6
Q ss_pred HHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCcccccc---------------------CCeEEEEEecCC
Q 045633 4 NTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN---------------------FDKRIWVCVSDP 62 (794)
Q Consensus 4 ~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~---------------------f~~~~~v~~~~~ 62 (794)
.++..+..... .....+.++|+.|+||||+|..+++. +.+. ...+..++.+..
T Consensus 11 ~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~ 84 (325)
T COG0470 11 KRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDL 84 (325)
T ss_pred HHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCceEEeccccc
Confidence 44555555332 23445889999999999999888873 3211 234455555444
Q ss_pred CC---HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc
Q 045633 63 FD---EFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK 139 (794)
Q Consensus 63 ~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 139 (794)
.. ..+..+++.+....... .++.-++|+|+++.........+...+......+++|++|.+
T Consensus 85 ~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 85 RKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred CCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCC
Confidence 33 23333333333222111 356789999999776666666677777666677888888874
Q ss_pred h-hhhhc-ccccceEEccCCC
Q 045633 140 E-TVARM-MESTDVISIKELS 158 (794)
Q Consensus 140 ~-~v~~~-~~~~~~~~l~~l~ 158 (794)
. .+... ......+.+.+.+
T Consensus 149 ~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 149 PSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred hhhccchhhhcceeeecCCch
Confidence 3 22221 1234466666633
No 199
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.07 E-value=0.00051 Score=46.92 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=28.4
Q ss_pred CcccEEeeccCccCcCCCcCccCCCCccEEEeccCcc
Q 045633 723 PQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 723 ~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~ 759 (794)
|+|++|++++| .++.+|..+.++++|+.|++++|+.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCC
Confidence 57888999888 7888888788889999999988864
No 200
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.00026 Score=68.24 Aligned_cols=202 Identities=15% Similarity=0.124 Sum_probs=115.7
Q ss_pred cCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchh-ccccCccEEe
Q 045633 557 EKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWT-ASLDKLKRLD 635 (794)
Q Consensus 557 ~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~-~~l~~L~~L~ 635 (794)
..+++++.++|.+|.+.+ -.++...+.++|.|+.|+|++|.....+. .. .-..+|+.|.
T Consensus 68 ~~~~~v~elDL~~N~iSd-----------------WseI~~ile~lP~l~~LNls~N~L~s~I~---~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISD-----------------WSEIGAILEQLPALTTLNLSCNSLSSDIK---SLPLPLKNLRVLV 127 (418)
T ss_pred HHhhhhhhhhcccchhcc-----------------HHHHHHHHhcCccceEeeccCCcCCCccc---cCcccccceEEEE
Confidence 356889999999998653 35566667889999999999988765421 12 2457999999
Q ss_pred ecCCCCC-CcCC-CCCCCCCcceeeecccccceEe--Ccccc-cC-cccCCCccccc------cCCCccccCCccceeec
Q 045633 636 LAFCPRC-EIMP-PLGKLPSLEILRIAEMVSVKKV--GDEFL-GI-GIRDHNHIHGT------FSSSSVVAFPKLEKLDL 703 (794)
Q Consensus 636 L~~~~~l-~~l~-~l~~L~~L~~L~l~~~~~l~~~--~~~~~-~~-~~l~~~~l~~~------~~~~~~~~~~~L~~L~l 703 (794)
|.+.+.- .... .+..+|.++.|+++.++ +..+ .++.. .. ..+..+++.+. ..-.-...||++..+-+
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 9887422 1222 26788999999888632 2211 11100 00 01111111100 00000234666666655
Q ss_pred cccccccccccCCCCccCCCcccEEeeccCccCcCCCc--CccCCCCccEEEeccCccccccccccCCCCCcccccccee
Q 045633 704 WIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPD--QLLRSTTLESLEIGEAPIVEQNFKKDTGKDWSKISHIPNI 781 (794)
Q Consensus 704 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~i~~~ 781 (794)
..|| ++..... ...-.+|.+--|.++.+ ++.++.. .+..+++|.-|.+.++|.....-. ...-+--++.+++|
T Consensus 207 ~e~P-lK~~s~e-k~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llIaRL~~v 281 (418)
T KOG2982|consen 207 CEGP-LKTESSE-KGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLIARLTKV 281 (418)
T ss_pred ecCc-ccchhhc-ccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEEeeccce
Confidence 5542 2222211 11225666666777666 5555543 356788999999999987544321 22224466888888
Q ss_pred eec
Q 045633 782 LIS 784 (794)
Q Consensus 782 ~~~ 784 (794)
.+.
T Consensus 282 ~vL 284 (418)
T KOG2982|consen 282 QVL 284 (418)
T ss_pred EEe
Confidence 865
No 201
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.05 E-value=0.0016 Score=66.42 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=60.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
.+-+.|+|..|+|||.||.++++ .....-..+.|+++. .++..+....... ...+. +.. ++ +
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~~~------~l~~~lk~~~~~~-----~~~~~---l~~-l~-~ 217 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLHFP------EFIRELKNSISDG-----SVKEK---IDA-VK-E 217 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEEHH------HHHHHHHHHHhcC-----cHHHH---HHH-hc-C
Confidence 45688999999999999999998 443332346677553 4555554444211 12222 222 22 4
Q ss_pred eEEEEEeCCCCCCccChhh--hHhhc-cCC-CCCcEEEEEccc
Q 045633 101 KFFLILDDVWTDDHSKWEP--FHNCL-MNG-LCGSRILVTTRK 139 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr~ 139 (794)
-=||||||+.......|.. +...+ ... ..+-.+|+||.-
T Consensus 218 ~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 218 APVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 5689999996555556643 44444 222 234568888874
No 202
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.05 E-value=0.0017 Score=63.15 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=35.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIA 69 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 69 (794)
.-+++.|+|++|+|||++|.+++. .....-..++|++... ++...+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHH
Confidence 458999999999999999988776 3333446799999875 5544433
No 203
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.0062 Score=62.90 Aligned_cols=91 Identities=12% Similarity=0.131 Sum_probs=51.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI 97 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 97 (794)
.+.++|+|+|++|+||||++..++. ....+=..+.+++..... ...+-++..++.++.......+...+.+.+...-
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~--~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAW--QFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHH--HHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 3568999999999999999988876 333222245566654322 2333344444444433222234445544444332
Q ss_pred C-CceEEEEEeCCCC
Q 045633 98 K-GKKFFLILDDVWT 111 (794)
Q Consensus 98 ~-~~~~LlvlDdv~~ 111 (794)
. .+.=+|++|-.-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 1 1345788887743
No 204
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.05 E-value=0.006 Score=71.35 Aligned_cols=136 Identities=20% Similarity=0.260 Sum_probs=68.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCC-CCCCCHHHHHHHHHhHcCCc
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL-PNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l~~~l~~~ 100 (794)
+++.++|++|+|||++|+.+++ .....| +-++++...+..++. +... ........+...+... ..+
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~--~l~~~~---~~i~~~~~~~~~~i~-------g~~~~~~g~~~g~i~~~l~~~-~~~ 414 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAK--ALNRKF---VRFSLGGVRDEAEIR-------GHRRTYVGAMPGRIIQGLKKA-KTK 414 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HhcCCe---EEEeCCCcccHHHHc-------CCCCceeCCCCchHHHHHHHh-CcC
Confidence 4788999999999999999997 343333 223333322222211 1110 0001112223333333 223
Q ss_pred eEEEEEeCCCCCCccC----hhhhHhhccC--------C-------CCCcEEEEEccchh-hhh-cccccceEEccCCCh
Q 045633 101 KFFLILDDVWTDDHSK----WEPFHNCLMN--------G-------LCGSRILVTTRKET-VAR-MMESTDVISIKELSE 159 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~----~~~l~~~l~~--------~-------~~gs~iivTtr~~~-v~~-~~~~~~~~~l~~l~~ 159 (794)
+-+|+||+++...... ...+...+.+ . ..+.-+|.||.... +.. ......++++.+++.
T Consensus 415 ~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~ 494 (775)
T TIGR00763 415 NPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTE 494 (775)
T ss_pred CCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCH
Confidence 3478999996532211 1223332221 0 01233445554432 111 123345889999999
Q ss_pred HhHHHHHHHHh
Q 045633 160 HECWSLFKRFA 170 (794)
Q Consensus 160 ~ea~~Lf~~~~ 170 (794)
++-.+++.++.
T Consensus 495 ~e~~~I~~~~l 505 (775)
T TIGR00763 495 EEKLEIAKKYL 505 (775)
T ss_pred HHHHHHHHHHH
Confidence 99888887654
No 205
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.05 E-value=0.0032 Score=74.36 Aligned_cols=145 Identities=14% Similarity=0.171 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccC------Ce-EEEEEecCCCCHHHHHHHHHH
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF------DK-RIWVCVSDPFDEFRIAKAIIE 74 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f------~~-~~~v~~~~~~~~~~~~~~i~~ 74 (794)
|..++++.|... .-.-+.++|++|+|||++|+.+++ ++...+ .. +++++++ .+ .
T Consensus 181 ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~--~i~~~~~p~~l~~~~~~~l~~~------~l----~- 241 (852)
T TIGR03346 181 EIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQ--RIVNGDVPESLKNKRLLALDMG------AL----I- 241 (852)
T ss_pred HHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHH--HHhccCCchhhcCCeEEEeeHH------HH----h-
Confidence 445566656543 223455899999999999998887 332211 22 2333321 11 0
Q ss_pred HhcCCCCCCCCHHHHHHHHHhHc--CCceEEEEEeCCCCCC-----cc--Chhh-hHhhccCCCCCcEEEEEccchhhhh
Q 045633 75 GLEGSLPNLGELNSLLEYIHTSI--KGKKFFLILDDVWTDD-----HS--KWEP-FHNCLMNGLCGSRILVTTRKETVAR 144 (794)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-----~~--~~~~-l~~~l~~~~~gs~iivTtr~~~v~~ 144 (794)
.+.. ...+.+.....+.+.+ .+++.+|++|++.... .. +... +...+ ..+ .-++|-+|.......
T Consensus 242 --a~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l-~~g-~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 242 --AGAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL-ARG-ELHCIGATTLDEYRK 316 (852)
T ss_pred --hcch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh-hcC-ceEEEEeCcHHHHHH
Confidence 0100 0012233333333333 2468999999995321 00 1112 22222 111 235565555443311
Q ss_pred c-------ccccceEEccCCChHhHHHHHHHHh
Q 045633 145 M-------MESTDVISIKELSEHECWSLFKRFA 170 (794)
Q Consensus 145 ~-------~~~~~~~~l~~l~~~ea~~Lf~~~~ 170 (794)
. ......+.++..+.++..+++....
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 1224568899999999999887653
No 206
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0041 Score=61.05 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=28.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccc--cccCCeEEEEEe
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDV--IENFDKRIWVCV 59 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~--~~~f~~~~~v~~ 59 (794)
|+|.++|++|.|||+|+++++++..+ ...|.....+.+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 78999999999999999999997544 344544444443
No 207
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.01 E-value=0.0077 Score=66.80 Aligned_cols=151 Identities=14% Similarity=0.127 Sum_probs=78.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
.+-+.++|++|+|||++|++++. +.... |+.++. ..+ .....+ .....+...+.......
T Consensus 88 ~~giLL~GppGtGKT~la~alA~--~~~~~-----~~~i~~----~~~----~~~~~g-----~~~~~l~~~f~~a~~~~ 147 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAG--EAGVP-----FFSISG----SDF----VEMFVG-----VGASRVRDLFEQAKKNA 147 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HcCCC-----eeeccH----HHH----HHHHhc-----ccHHHHHHHHHHHHhcC
Confidence 44578999999999999999987 32222 222221 111 111111 01112223333333456
Q ss_pred eEEEEEeCCCCCCc----------cCh----hhhHhhccC--CCCCcEEEEEccchhhh-----hcccccceEEccCCCh
Q 045633 101 KFFLILDDVWTDDH----------SKW----EPFHNCLMN--GLCGSRILVTTRKETVA-----RMMESTDVISIKELSE 159 (794)
Q Consensus 101 ~~LlvlDdv~~~~~----------~~~----~~l~~~l~~--~~~gs~iivTtr~~~v~-----~~~~~~~~~~l~~l~~ 159 (794)
+.+|++|+++.... ... ..+...+.. ...+..||.||...... +...-+..+.++..+.
T Consensus 148 p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~ 227 (495)
T TIGR01241 148 PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDI 227 (495)
T ss_pred CCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCH
Confidence 78999999954110 011 112222221 12344566666554311 1112356788999999
Q ss_pred HhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCC
Q 045633 160 HECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGL 196 (794)
Q Consensus 160 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 196 (794)
++-.++|..+....... .... ...+++.+.|.
T Consensus 228 ~~R~~il~~~l~~~~~~-~~~~----l~~la~~t~G~ 259 (495)
T TIGR01241 228 KGREEILKVHAKNKKLA-PDVD----LKAVARRTPGF 259 (495)
T ss_pred HHHHHHHHHHHhcCCCC-cchh----HHHHHHhCCCC
Confidence 99999998876443221 1112 23566666664
No 208
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.00 E-value=0.0056 Score=70.86 Aligned_cols=156 Identities=20% Similarity=0.228 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN 82 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 82 (794)
+++|+++|..........-.++.++|++|+||||+|+.++. .....| +-++++...+..++...-.. ..+.
T Consensus 331 K~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~d~~~i~g~~~~-~~g~--- 401 (784)
T PRK10787 331 KDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVRDEAEIRGHRRT-YIGS--- 401 (784)
T ss_pred HHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCCCHHHhccchhc-cCCC---
Confidence 56677766632111112345788999999999999999986 333222 22344443333222111100 0011
Q ss_pred CCCHHHHHHHHHhHcCCceEEEEEeCCCCCCccC----hhhhHhhccCC---------------CCCcEEEEEccchhhh
Q 045633 83 LGELNSLLEYIHTSIKGKKFFLILDDVWTDDHSK----WEPFHNCLMNG---------------LCGSRILVTTRKETVA 143 (794)
Q Consensus 83 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~----~~~l~~~l~~~---------------~~gs~iivTtr~~~v~ 143 (794)
........+.+. ....-+++||+++...... .+.+...+.+. ..+.-+|.|+....+.
T Consensus 402 --~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~ 478 (784)
T PRK10787 402 --MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIP 478 (784)
T ss_pred --CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCC
Confidence 112223333332 2234478999996533221 34455444331 1233344555443322
Q ss_pred hc-ccccceEEccCCChHhHHHHHHHHh
Q 045633 144 RM-MESTDVISIKELSEHECWSLFKRFA 170 (794)
Q Consensus 144 ~~-~~~~~~~~l~~l~~~ea~~Lf~~~~ 170 (794)
.. .....++.+.+++.+|-.++.+++.
T Consensus 479 ~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 479 APLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred HHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 21 2334578899999999888877654
No 209
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.00 E-value=0.00061 Score=64.67 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=52.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC-CCCHHHHHHHHHHHhcCCC---CCCCCHHHHHH-HHHh
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSL---PNLGELNSLLE-YIHT 95 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~-~l~~ 95 (794)
+++|.++|+.|+||||.+.+++.+ ...+-..+..|+... .....+.++..++.++.+. ....+..+... .+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 479999999999999999777763 333334577888764 3455677788888887542 22223333332 3333
Q ss_pred HcCCceEEEEEeCC
Q 045633 96 SIKGKKFFLILDDV 109 (794)
Q Consensus 96 ~l~~~~~LlvlDdv 109 (794)
.-.++.=+|++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 22233457788865
No 210
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0045 Score=67.69 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP 81 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 81 (794)
-+|+|++.|.-..-...-+=.++.++|++|+|||+|++.+++ .....| +-++++.-.+-.++. +.+..
T Consensus 331 VKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIR-------GHRRT 398 (782)
T COG0466 331 VKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIR-------GHRRT 398 (782)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhc-------ccccc
Confidence 357788776522111222337999999999999999999997 455554 223555544443321 11111
Q ss_pred CC-CCHHHHHHHHHhHcCCceEEEEEeCCCCCCc----cChhhhHhhccCCCC-------------CcEEE-EEccc-hh
Q 045633 82 NL-GELNSLLEYIHTSIKGKKFFLILDDVWTDDH----SKWEPFHNCLMNGLC-------------GSRIL-VTTRK-ET 141 (794)
Q Consensus 82 ~~-~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----~~~~~l~~~l~~~~~-------------gs~ii-vTtr~-~~ 141 (794)
-. .-...+++.+++. +.++=+++||.++.... +...++...|.+..+ =|.|+ |||-+ -+
T Consensus 399 YIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~ 477 (782)
T COG0466 399 YIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD 477 (782)
T ss_pred ccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc
Confidence 11 1123334444443 56788999999954321 122334444443221 13343 33333 22
Q ss_pred -hhh-cccccceEEccCCChHhHHHHHHHHh
Q 045633 142 -VAR-MMESTDVISIKELSEHECWSLFKRFA 170 (794)
Q Consensus 142 -v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~ 170 (794)
+.. .+....++++.+.+.+|-.++-+++.
T Consensus 478 tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 478 TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 222 23445689999999999888766654
No 211
>PRK07261 topology modulation protein; Provisional
Probab=96.98 E-value=0.0016 Score=60.55 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.|.|+|++|+||||||+++..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 212
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.98 E-value=0.0038 Score=64.25 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=55.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccC-Ce-EEEEEecC-CCCHHHHHHHHHHHhcCCCCCCCCHH-----HHHHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENF-DK-RIWVCVSD-PFDEFRIAKAIIEGLEGSLPNLGELN-----SLLEYI 93 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~-~~~v~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~l 93 (794)
+.+.|+|..|+|||||++.+++ .+.... +. ++|+-+.+ ...+.++.+.+...+.....+..... .....+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 4567999999999999999887 343333 33 35666654 45678888888777665432222111 112222
Q ss_pred HhHc--CCceEEEEEeCC
Q 045633 94 HTSI--KGKKFFLILDDV 109 (794)
Q Consensus 94 ~~~l--~~~~~LlvlDdv 109 (794)
.+++ ++++++||+|++
T Consensus 212 Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 212 AKRLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHHHcCCCEEEEEeCc
Confidence 2333 589999999998
No 213
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.98 E-value=0.0013 Score=67.70 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=56.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
.-+.++|..|+|||.||.++++ ++...-..|+|+++. +++..+...-... ..+.... .+.+. +-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~~------~l~~~l~~~~~~~---~~~~~~~----~~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTAD------ELIEILREIRFNN---DKELEEV----YDLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEHH------HHHHHHHHHHhcc---chhHHHH----HHHhc-cC
Confidence 5688999999999999999998 443333467777653 2333333221111 0111111 12222 23
Q ss_pred EEEEEeCCCCCCccCh--hhhHhhccCC-CCCcEEEEEccc
Q 045633 102 FFLILDDVWTDDHSKW--EPFHNCLMNG-LCGSRILVTTRK 139 (794)
Q Consensus 102 ~LlvlDdv~~~~~~~~--~~l~~~l~~~-~~gs~iivTtr~ 139 (794)
=|||+||+.......| ..+...+... ..+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4899999955433333 2243333322 224468888884
No 214
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.98 E-value=0.0067 Score=71.39 Aligned_cols=145 Identities=14% Similarity=0.157 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccC------C-eEEEEEecCCCCHHHHHHHHHH
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF------D-KRIWVCVSDPFDEFRIAKAIIE 74 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f------~-~~~~v~~~~~~~~~~~~~~i~~ 74 (794)
|..++++.|.... -.-+.++|++|+|||++|+.++. ++.... . .+++++++. +.
T Consensus 186 ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~--~i~~~~vp~~l~~~~~~~l~l~~------l~----- 246 (857)
T PRK10865 186 EIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQ--RIINGEVPEGLKGRRVLALDMGA------LV----- 246 (857)
T ss_pred HHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHH--HhhcCCCchhhCCCEEEEEehhh------hh-----
Confidence 4556666665542 23455999999999999998887 332211 1 233343321 00
Q ss_pred HhcCCCCCCCCHHHHHHHHHhHc--CCceEEEEEeCCCCCCcc-------Chhh-hHhhccCCCCCcEEEEEccchhhhh
Q 045633 75 GLEGSLPNLGELNSLLEYIHTSI--KGKKFFLILDDVWTDDHS-------KWEP-FHNCLMNGLCGSRILVTTRKETVAR 144 (794)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~~~-------~~~~-l~~~l~~~~~gs~iivTtr~~~v~~ 144 (794)
.+. ....+.++....+.+.+ .+++.+|++|+++..... +... +...+.. + .-++|-||.......
T Consensus 247 --ag~-~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g-~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 247 --AGA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-G-ELHCVGATTLDEYRQ 321 (857)
T ss_pred --hcc-chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-C-CCeEEEcCCCHHHHH
Confidence 000 00112222223222222 256899999998542100 1122 2222222 1 346666666544311
Q ss_pred c-------ccccceEEccCCChHhHHHHHHHHh
Q 045633 145 M-------MESTDVISIKELSEHECWSLFKRFA 170 (794)
Q Consensus 145 ~-------~~~~~~~~l~~l~~~ea~~Lf~~~~ 170 (794)
. ......+.+...+.++..++++...
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1 1223366777779999999886544
No 215
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.97 E-value=0.0087 Score=69.63 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=53.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCC---CCHHHHHHHHHhH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNL---GELNSLLEYIHTS 96 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~ 96 (794)
...++.++|+.|+|||++|+.++. .. +...+.++.++..... .+...++. .+.. .....+...++
T Consensus 483 p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~----~~~~lig~-~~gyvg~~~~~~l~~~~~-- 550 (731)
T TIGR02639 483 PVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKH----TVSRLIGA-PPGYVGFEQGGLLTEAVR-- 550 (731)
T ss_pred CceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhcc----cHHHHhcC-CCCCcccchhhHHHHHHH--
Confidence 345788999999999999999987 33 2334556654422211 11111222 2211 11122223232
Q ss_pred cCCceEEEEEeCCCCCCccChhhhHhhccC
Q 045633 97 IKGKKFFLILDDVWTDDHSKWEPFHNCLMN 126 (794)
Q Consensus 97 l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~ 126 (794)
+...-+++||+++..+...+..+...+..
T Consensus 551 -~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 551 -KHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -hCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 23456999999977766666666666554
No 216
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.00099 Score=66.10 Aligned_cols=81 Identities=23% Similarity=0.286 Sum_probs=48.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
..-+.++|.+|+|||.||.++.+ ++...--.|.|+++ .++..++....... . ....+.+.++ +
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~~~------~el~~~Lk~~~~~~-----~---~~~~l~~~l~-~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFITA------PDLLSKLKAAFDEG-----R---LEEKLLRELK-K 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEEH------HHHHHHHHHHHhcC-----c---hHHHHHHHhh-c
Confidence 34578999999999999999998 55533245677754 34555555544331 1 1122222222 2
Q ss_pred eEEEEEeCCCCCCccChh
Q 045633 101 KFFLILDDVWTDDHSKWE 118 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~~~ 118 (794)
-=||||||+......+|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 348899999654444443
No 217
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.95 E-value=0.0032 Score=58.38 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=28.9
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF 63 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~ 63 (794)
++.|+|.+|+||||+|..++. .....-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcch
Confidence 367999999999999998887 333333567788876543
No 218
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.94 E-value=0.0023 Score=63.01 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=34.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHH
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFR 67 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 67 (794)
..-.++.|+|.+|+|||++|.+++. .....-..++|++.. ..+...
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHHH
Confidence 3457899999999999999988876 333334678999887 444433
No 219
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.93 E-value=0.02 Score=58.39 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=24.0
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 18 QNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 18 ~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
-.-++.++|||+.|.|||.+|++++.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~ 170 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFK 170 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 35789999999999999999999998
No 220
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.91 E-value=0.023 Score=53.67 Aligned_cols=94 Identities=21% Similarity=0.328 Sum_probs=55.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
--|.+||.-|+|||+|++++.+ ++....-..+-|+-.+- .....+.+.++. ...|
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV~k~dl---------------------~~Lp~l~~~Lr~--~~~k 140 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEVDKEDL---------------------ATLPDLVELLRA--RPEK 140 (287)
T ss_pred cceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEEcHHHH---------------------hhHHHHHHHHhc--CCce
Confidence 3477999999999999999988 55555433333321111 111122222222 3679
Q ss_pred EEEEEeCCCCCC-ccChhhhHhhccCC---CCCcEEEEEccch
Q 045633 102 FFLILDDVWTDD-HSKWEPFHNCLMNG---LCGSRILVTTRKE 140 (794)
Q Consensus 102 ~LlvlDdv~~~~-~~~~~~l~~~l~~~---~~gs~iivTtr~~ 140 (794)
|+|+.||..-++ ...+..+...+..+ .|..-++..|.++
T Consensus 141 FIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 141 FILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred EEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 999999985432 34566677666643 2344455555554
No 221
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.91 E-value=0.0014 Score=61.87 Aligned_cols=117 Identities=23% Similarity=0.254 Sum_probs=54.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEec----CCC-----C----HHHHHHHHHHHhcCCCCCCCCHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS----DPF-----D----EFRIAKAIIEGLEGSLPNLGELN 87 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~----~~~-----~----~~~~~~~i~~~l~~~~~~~~~~~ 87 (794)
..+|.+.|++|.|||.||.+.+-+.-..+.|+.++++.-. +.. + .......+...+..-. .....+
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~-~~~~~~ 97 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF-GKEKLE 97 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS--TTCHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh-ChHhHH
Confidence 3488999999999999997766543345778888776421 100 0 0111222222222111 111222
Q ss_pred HHHHHH------HhHcCCc---eEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh
Q 045633 88 SLLEYI------HTSIKGK---KFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET 141 (794)
Q Consensus 88 ~~~~~l------~~~l~~~---~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 141 (794)
...+.= ..+++++ ..+||+|++......++..+ +-..+.|||+|++--...
T Consensus 98 ~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 98 ELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGDPSQ 157 (205)
T ss_dssp HHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE----
T ss_pred HHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecCcee
Confidence 221100 1233454 57999999955444444444 445567999999976543
No 222
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.91 E-value=0.028 Score=61.44 Aligned_cols=196 Identities=14% Similarity=0.109 Sum_probs=109.6
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCc------cccccCCeEEEEEecCCCCHHHHHHHHHHHh
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDK------DVIENFDKRIWVCVSDPFDEFRIAKAIIEGL 76 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~------~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l 76 (794)
-.+|...+..--.. +..-+.+.|.|-+|.|||..+..|.+.. .-...|+ .+.|+.-+-..+.+++..|+.++
T Consensus 405 ~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~l 482 (767)
T KOG1514|consen 405 FSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEAL 482 (767)
T ss_pred HHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhc
Confidence 34555555433221 2334589999999999999999888731 1123354 35677777778999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHhHcC-----CceEEEEEeCCCCCCccChhhhHhhccC-CCCCcEEEEEccch------h---
Q 045633 77 EGSLPNLGELNSLLEYIHTSIK-----GKKFFLILDDVWTDDHSKWEPFHNCLMN-GLCGSRILVTTRKE------T--- 141 (794)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~------~--- 141 (794)
.+.... .....+.+..++. .+..++++|+++..-...-+-+...+.| ..+++|++|-+=-. .
T Consensus 483 sg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~ 559 (767)
T KOG1514|consen 483 SGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLM 559 (767)
T ss_pred ccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhc
Confidence 776432 3334555555553 4578899998832111111223333333 34677766543211 1
Q ss_pred --hhhcccccceEEccCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHh
Q 045633 142 --VARMMESTDVISIKELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGS 205 (794)
Q Consensus 142 --v~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 205 (794)
+...+ +...+...+.+.++-.++...+..+. ..-.....+=+++.|+.-.|..-.|+.+.-+
T Consensus 560 nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 560 NRVSSRL-GLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred cchhhhc-cceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 11111 12355667777777777776655433 2222344444555555555555555544433
No 223
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.91 E-value=0.0014 Score=61.65 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=29.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEE
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC 58 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~ 58 (794)
...+|.+.|+.|+||||+|+.++. +....+..+++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 456899999999999999999988 5555666666664
No 224
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.89 E-value=0.0036 Score=73.91 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=54.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCC---CHHHHHHHHHhHc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLG---ELNSLLEYIHTSI 97 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~~l 97 (794)
..++.++|+.|+|||++|+.+.. .....-...+.++++....... ...+.+..++.. ....+...+++
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~~~~~-----~~~l~g~~~g~~g~~~~g~l~~~v~~-- 665 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRIDMSEYMEKHS-----VARLIGAPPGYVGYEEGGQLTEAVRR-- 665 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhhcccch-----HHHhcCCCCCccCcccccHHHHHHHc--
Confidence 46788999999999999999987 2222223445555554222111 122222222211 11222233332
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMN 126 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~ 126 (794)
....+|+||+++......+..+...+..
T Consensus 666 -~p~~vlllDeieka~~~v~~~Ll~~l~~ 693 (852)
T TIGR03346 666 -KPYSVVLFDEVEKAHPDVFNVLLQVLDD 693 (852)
T ss_pred -CCCcEEEEeccccCCHHHHHHHHHHHhc
Confidence 2345899999987777777777776654
No 225
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.87 E-value=0.0028 Score=62.06 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=31.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF 63 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~ 63 (794)
..-+++.|+|.+|+||||+|.+++. .....-..++|++....+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLS 59 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCC
Confidence 3557899999999999999988876 333333467888765444
No 226
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.85 E-value=0.0021 Score=64.35 Aligned_cols=126 Identities=28% Similarity=0.279 Sum_probs=67.9
Q ss_pred HHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhC-CccccccCCeEEE----EEecC---------CCCHHHHHHHH
Q 045633 7 KSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYN-DKDVIENFDKRIW----VCVSD---------PFDEFRIAKAI 72 (794)
Q Consensus 7 ~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~-~~~~~~~f~~~~~----v~~~~---------~~~~~~~~~~i 72 (794)
+++|+++ ++..|.+.|.+|.|||-||.++.- +...++.|+.++- +.+++ ...+....+.|
T Consensus 237 LdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i 310 (436)
T COG1875 237 LDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAI 310 (436)
T ss_pred HHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHH
Confidence 3456655 789999999999999999954332 1223445554332 22222 12233344555
Q ss_pred HHHhcCCCC-CCCCHHHHHHHHH----------hHcCCc---eEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEcc
Q 045633 73 IEGLEGSLP-NLGELNSLLEYIH----------TSIKGK---KFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTR 138 (794)
Q Consensus 73 ~~~l~~~~~-~~~~~~~~~~~l~----------~~l~~~---~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr 138 (794)
...+..-.. +... ....+.+. .+.+++ +-+||+|.+..-.+.++..+ +-..++|+||+.|.-
T Consensus 311 ~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~G~GsKIVl~gd 386 (436)
T COG1875 311 FDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRAGEGSKIVLTGD 386 (436)
T ss_pred HhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhccCCCEEEEcCC
Confidence 444421111 1011 22222221 122343 57899999955444444444 445678999999876
Q ss_pred chhh
Q 045633 139 KETV 142 (794)
Q Consensus 139 ~~~v 142 (794)
..++
T Consensus 387 ~aQi 390 (436)
T COG1875 387 PAQI 390 (436)
T ss_pred HHHc
Confidence 5443
No 227
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.84 E-value=0.011 Score=64.25 Aligned_cols=134 Identities=16% Similarity=0.109 Sum_probs=71.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
.++-|.++|++|+|||.+|+++++ +....| +-++.+. +.. ...+ .....+...+...-..
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~--e~~~~~---~~l~~~~----------l~~----~~vG-ese~~l~~~f~~A~~~ 317 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAN--DWQLPL---LRLDVGK----------LFG----GIVG-ESESRMRQMIRIAEAL 317 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEEhHH----------hcc----cccC-hHHHHHHHHHHHHHhc
Confidence 456688999999999999999988 333221 2222211 110 1000 0111111222222234
Q ss_pred ceEEEEEeCCCCCCc-----cC-------hhhhHhhccCCCCCcEEEEEccchhh-----hhcccccceEEccCCChHhH
Q 045633 100 KKFFLILDDVWTDDH-----SK-------WEPFHNCLMNGLCGSRILVTTRKETV-----ARMMESTDVISIKELSEHEC 162 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~-----~~-------~~~l~~~l~~~~~gs~iivTtr~~~v-----~~~~~~~~~~~l~~l~~~ea 162 (794)
.+++|++|+++..-. .+ +..+...+.....+.-||.||..... .+.-.-+..+.++..+.++-
T Consensus 318 ~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 318 SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 689999999953110 00 11222223333334446667765432 11112356788998899999
Q ss_pred HHHHHHHhhCC
Q 045633 163 WSLFKRFAFSG 173 (794)
Q Consensus 163 ~~Lf~~~~~~~ 173 (794)
.++|..+....
T Consensus 398 ~~Il~~~l~~~ 408 (489)
T CHL00195 398 EKIFKIHLQKF 408 (489)
T ss_pred HHHHHHHHhhc
Confidence 99998877553
No 228
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0084 Score=64.06 Aligned_cols=168 Identities=15% Similarity=0.151 Sum_probs=86.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
..++=|.++|++|+|||.||++++.+ .. +-|+.++. -+|..++.+. ..+.+.+...+.-.
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAge--l~-----vPf~~isA--------peivSGvSGE-----SEkkiRelF~~A~~ 280 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGE--LG-----VPFLSISA--------PEIVSGVSGE-----SEKKIRELFDQAKS 280 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhh--cC-----CceEeecc--------hhhhcccCcc-----cHHHHHHHHHHHhc
Confidence 34566779999999999999999983 32 33444332 1233333222 22333344444456
Q ss_pred CceEEEEEeCCCCCCc------cC-----hhhhHhhccCC----CCCcEEEE---Eccchhhhhc---cc-ccceEEccC
Q 045633 99 GKKFFLILDDVWTDDH------SK-----WEPFHNCLMNG----LCGSRILV---TTRKETVARM---ME-STDVISIKE 156 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~------~~-----~~~l~~~l~~~----~~gs~iiv---Ttr~~~v~~~---~~-~~~~~~l~~ 156 (794)
.-++++++|+++-... .+ ..++...+..- ..|-.|+| |+|...+-.. .+ -++-+.+.-
T Consensus 281 ~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~v 360 (802)
T KOG0733|consen 281 NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGV 360 (802)
T ss_pred cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecC
Confidence 6799999999953211 11 22333333221 11333333 4443322211 12 245677777
Q ss_pred CChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhh
Q 045633 157 LSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLL 207 (794)
Q Consensus 157 l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 207 (794)
-+..+-.++++..+.+-.... .-++..+|+.--.+.|---.|+...|+..
T Consensus 361 P~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~Aa~v 410 (802)
T KOG0733|consen 361 PSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCREAAFV 410 (802)
T ss_pred CchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 777777777766655433322 23344444433333344445555555544
No 229
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0047 Score=64.75 Aligned_cols=44 Identities=25% Similarity=0.207 Sum_probs=34.7
Q ss_pred CHHHHHHHHhcCCCc---cCCCCeEEEEEEecCCCcHHHHHHHHhCC
Q 045633 1 EEKNTLKSKLLCESN---EQQNAVQIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 1 ~e~~~i~~~l~~~~~---~~~~~~~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
+|+|+|++.|.++.. -+..=++=|.++|++|.|||-||++++..
T Consensus 314 ~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 314 QELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred HHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 488999999987632 12344567889999999999999999983
No 230
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.016 Score=62.05 Aligned_cols=154 Identities=19% Similarity=0.291 Sum_probs=86.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHH-HHHhHcCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLE-YIHTSIKG 99 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~ 99 (794)
+.=|.+||++|+|||-||++|++ +....| +++..+ ++ ++..-+ +.+..++ ...+.-..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----EL----lNkYVG------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----EL----LNKYVG------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----HH----HHHHhh------hHHHHHHHHHHHhhcC
Confidence 34467999999999999999999 555554 444331 11 221111 1122222 23333346
Q ss_pred ceEEEEEeCCCCCC-----ccC------hhhhHhhccC--CCCCcEEEEEccchhhhhc--c---cccceEEccCCChHh
Q 045633 100 KKFFLILDDVWTDD-----HSK------WEPFHNCLMN--GLCGSRILVTTRKETVARM--M---ESTDVISIKELSEHE 161 (794)
Q Consensus 100 ~~~LlvlDdv~~~~-----~~~------~~~l~~~l~~--~~~gs~iivTtr~~~v~~~--~---~~~~~~~l~~l~~~e 161 (794)
-++.|+||.++... ... +.++.-.+.. ...|.-||-.|.-+++... + .-+..+-|..-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 79999999995411 111 1222222222 2346667766665544321 1 225678888889999
Q ss_pred HHHHHHHHhhCCCCC-CChhHHHHHHHHHHhhcCCCc
Q 045633 162 CWSLFKRFAFSGRSP-TDCEQLEEIGRKIVGKCKGLP 197 (794)
Q Consensus 162 a~~Lf~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 197 (794)
-.++++........+ ..+-.+++++.. .+|.|.-
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 999998887642222 233445554443 3555554
No 231
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.015 Score=54.81 Aligned_cols=128 Identities=16% Similarity=0.110 Sum_probs=74.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc-
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI- 97 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 97 (794)
..++=|.++|++|.|||-||++|+++. ...|+.++.. +-+++-|.+ ..+.+++.+
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs---elvqk~ige--------------gsrmvrelfv 234 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS---ELVQKYIGE--------------GSRMVRELFV 234 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH---HHHHHHhhh--------------hHHHHHHHHH
Confidence 456678899999999999999999842 3456666642 112221111 111111111
Q ss_pred ---CCceEEEEEeCCCCCC--------------ccChhhhHhhccCC--CCCcEEEEEccchhhhh-----cccccceEE
Q 045633 98 ---KGKKFFLILDDVWTDD--------------HSKWEPFHNCLMNG--LCGSRILVTTRKETVAR-----MMESTDVIS 153 (794)
Q Consensus 98 ---~~~~~LlvlDdv~~~~--------------~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~-----~~~~~~~~~ 153 (794)
..-+.+|+.|.+++.. +..+-.+...+..+ .++-+||++|..-++.. .-..+..++
T Consensus 235 marehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkie 314 (404)
T KOG0728|consen 235 MAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIE 314 (404)
T ss_pred HHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCccccccc
Confidence 2457889999885411 11122234444433 35668888776544332 123366788
Q ss_pred ccCCChHhHHHHHHHHh
Q 045633 154 IKELSEHECWSLFKRFA 170 (794)
Q Consensus 154 l~~l~~~ea~~Lf~~~~ 170 (794)
.++-+.+.-.++++-+.
T Consensus 315 fp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 315 FPPPNEEARLDILKIHS 331 (404)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 88888888888886554
No 232
>PHA00729 NTP-binding motif containing protein
Probab=96.83 E-value=0.0042 Score=59.39 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+...|.|+|.+|+||||||..+.+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999887
No 233
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.83 E-value=0.0022 Score=58.62 Aligned_cols=108 Identities=18% Similarity=0.277 Sum_probs=77.9
Q ss_pred ccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccc
Q 045633 628 LDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIML 707 (794)
Q Consensus 628 l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 707 (794)
..+...++|++| .+..++.+..++.|..|.+.+ +.+..+.... ...+|+|..|.+.+ +
T Consensus 41 ~d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~n-NrIt~I~p~L-------------------~~~~p~l~~L~Ltn-N 98 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNN-NRITRIDPDL-------------------DTFLPNLKTLILTN-N 98 (233)
T ss_pred ccccceeccccc-chhhcccCCCccccceEEecC-Ccceeeccch-------------------hhhccccceEEecC-c
Confidence 456788999988 556677778889999999986 5677776543 34678999999988 4
Q ss_pred cccccccCCCCccCCCcccEEeeccCccCcCCCc----CccCCCCccEEEeccCcc
Q 045633 708 QLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPD----QLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 708 ~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~----~~~~l~~L~~L~l~~~~~ 759 (794)
++.++..- ..+..+|+|+.|.+-+||. +.-+. .+..+|+|+.||+.+-..
T Consensus 99 si~~l~dl-~pLa~~p~L~~Ltll~Npv-~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 99 SIQELGDL-DPLASCPKLEYLTLLGNPV-EHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred chhhhhhc-chhccCCccceeeecCCch-hcccCceeEEEEecCcceEeehhhhhH
Confidence 55554321 2245899999999999964 33332 245689999999987654
No 234
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0054 Score=66.35 Aligned_cols=147 Identities=17% Similarity=0.180 Sum_probs=76.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHH-HHHHhHc
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLL-EYIHTSI 97 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l 97 (794)
..++=|.+||++|+|||++|+++++ +-...| +.+..+ ++....-+ +.+..+ +...+.-
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp--------EL~sk~vG------eSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP--------ELFSKYVG------ESERAIREVFRKAR 524 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH--------HHHHHhcC------chHHHHHHHHHHHh
Confidence 4567788999999999999999998 444444 233221 11111111 112222 2222222
Q ss_pred CCceEEEEEeCCCCCCc-------cC----hhhhHhhccCCCCCcEE-EE--Eccchhhhhc-cc---ccceEEccCCCh
Q 045633 98 KGKKFFLILDDVWTDDH-------SK----WEPFHNCLMNGLCGSRI-LV--TTRKETVARM-ME---STDVISIKELSE 159 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~-------~~----~~~l~~~l~~~~~gs~i-iv--Ttr~~~v~~~-~~---~~~~~~l~~l~~ 159 (794)
+--..+|+||.++.... .. +.++...+........| || |-|...+... +. -+..+.++.-+.
T Consensus 525 ~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 34568999998854111 11 12222222222222223 33 3333222221 22 356777887777
Q ss_pred HhHHHHHHHHhhCCCCCCChhHHHHHHH
Q 045633 160 HECWSLFKRFAFSGRSPTDCEQLEEIGR 187 (794)
Q Consensus 160 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~ 187 (794)
+.-.++|+.++....... .-+++++++
T Consensus 605 ~aR~~Ilk~~~kkmp~~~-~vdl~~La~ 631 (693)
T KOG0730|consen 605 EARLEILKQCAKKMPFSE-DVDLEELAQ 631 (693)
T ss_pred HHHHHHHHHHHhcCCCCc-cccHHHHHH
Confidence 888899999886654432 234455444
No 235
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.81 E-value=0.00086 Score=58.59 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|+|.|++|+||||+|+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 236
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0074 Score=65.75 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=84.8
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP- 81 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~- 81 (794)
+++|++.+.-..-.++-+=+++..+|++|+|||.+|+.++. .....| +-++++.-.+..++. +....
T Consensus 420 KeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIk-------GHRRTY 487 (906)
T KOG2004|consen 420 KERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIK-------GHRRTY 487 (906)
T ss_pred HHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhc-------ccceee
Confidence 56777776522212334568999999999999999999987 444444 224566655554431 11111
Q ss_pred CCCCHHHHHHHHHhHcCCceEEEEEeCCCCCC---c-cChhhhHhhccCCCC-------------CcEEEEEccchhhhh
Q 045633 82 NLGELNSLLEYIHTSIKGKKFFLILDDVWTDD---H-SKWEPFHNCLMNGLC-------------GSRILVTTRKETVAR 144 (794)
Q Consensus 82 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~-~~~~~l~~~l~~~~~-------------gs~iivTtr~~~v~~ 144 (794)
-..-...+++.+++. +-.+-|+.+|.|+..- + +...++...|.+..+ =|+|++...-..+..
T Consensus 488 VGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idt 566 (906)
T KOG2004|consen 488 VGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDT 566 (906)
T ss_pred eccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecccccc
Confidence 111223344444443 4457788899985311 1 112333333333211 256665333211111
Q ss_pred ----cccccceEEccCCChHhHHHHHHHHh
Q 045633 145 ----MMESTDVISIKELSEHECWSLFKRFA 170 (794)
Q Consensus 145 ----~~~~~~~~~l~~l~~~ea~~Lf~~~~ 170 (794)
......++++.+...+|-+.+-+++.
T Consensus 567 IP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 567 IPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred CChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 12334688999999999777765544
No 237
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.80 E-value=0.013 Score=62.95 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=48.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCC-HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD-EFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
-+++.++|++|+||||++..++........-..|.+|+...... ..+.++...+.++.......+..+....+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 46899999999999999977765211012234577777654221 2222333344444332222333444444443 23
Q ss_pred ceEEEEEeCC
Q 045633 100 KKFFLILDDV 109 (794)
Q Consensus 100 ~~~LlvlDdv 109 (794)
..-+||+|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3578889966
No 238
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.79 E-value=0.0048 Score=60.79 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=51.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccC------CeEEEEEecCCCCHHHHHHHHHHHhcCCC---------CCC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF------DKRIWVCVSDPFDEFRIAKAIIEGLEGSL---------PNL 83 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f------~~~~~v~~~~~~~~~~~~~~i~~~l~~~~---------~~~ 83 (794)
..-.++.|+|.+|+|||++|.+++.. ..... ..++|++....++...+ .+++....... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeC
Confidence 35579999999999999999887652 22222 56889988776655443 33333322110 011
Q ss_pred CCHHHHHHHHHhHc----CCceEEEEEeCC
Q 045633 84 GELNSLLEYIHTSI----KGKKFFLILDDV 109 (794)
Q Consensus 84 ~~~~~~~~~l~~~l----~~~~~LlvlDdv 109 (794)
.+.++....+.+.. ..+.-++|+|.+
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsi 123 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSV 123 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 23344444444332 234557888887
No 239
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.74 E-value=0.0049 Score=60.95 Aligned_cols=86 Identities=19% Similarity=0.177 Sum_probs=51.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCC-eEEEEEecCC-CCHHHHHHHHHHHhcCC-------CCCCCCHH-----
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDP-FDEFRIAKAIIEGLEGS-------LPNLGELN----- 87 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~~v~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 87 (794)
+.++|.|..|+||||||+.+++ .+..+|. .++++-+++. ..+.++.+++...=... ..+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 5688999999999999999998 5555664 4555556543 33445555554321110 11111111
Q ss_pred HHHHHHHhHc--C-CceEEEEEeCC
Q 045633 88 SLLEYIHTSI--K-GKKFFLILDDV 109 (794)
Q Consensus 88 ~~~~~l~~~l--~-~~~~LlvlDdv 109 (794)
...-.+.+++ + ++.+|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122344455 3 88999999998
No 240
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.74 E-value=0.014 Score=54.99 Aligned_cols=119 Identities=17% Similarity=0.157 Sum_probs=63.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC--CCCHHHHHH------HHHHHhcCCC------CCCCCHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD--PFDEFRIAK------AIIEGLEGSL------PNLGELN 87 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~--~~~~~~~~~------~i~~~l~~~~------~~~~~~~ 87 (794)
.+++|.|..|.|||||++.++.. .....+.++++-.. ..+...... ++++.++... .....-+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 58999999999999999999873 22334545443111 112212111 1334433221 1111222
Q ss_pred HHHHHHHhHcCCceEEEEEeCCCC-CCccChhhhHhhccCC-CC-CcEEEEEccchhhh
Q 045633 88 SLLEYIHTSIKGKKFFLILDDVWT-DDHSKWEPFHNCLMNG-LC-GSRILVTTRKETVA 143 (794)
Q Consensus 88 ~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTtr~~~v~ 143 (794)
...-.+.+.+...+-++++|+--. -+....+.+...+... .. |..||++|.+....
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 333345566667788999998632 1222233343333322 12 56788888876654
No 241
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.74 E-value=0.0033 Score=73.68 Aligned_cols=111 Identities=23% Similarity=0.255 Sum_probs=59.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCC---CHHHHHHHHHh
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLG---ELNSLLEYIHT 95 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~ 95 (794)
....++.++|+.|+|||.+|+.++. ..-......+-++++..... .-...+.+..+... ....+...+++
T Consensus 594 ~p~~~~lf~Gp~GvGKT~lA~~La~--~l~~~~~~~~~~dmse~~~~-----~~~~~l~g~~~gyvg~~~~g~L~~~v~~ 666 (852)
T TIGR03345 594 KPLGVFLLVGPSGVGKTETALALAE--LLYGGEQNLITINMSEFQEA-----HTVSRLKGSPPGYVGYGEGGVLTEAVRR 666 (852)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH--HHhCCCcceEEEeHHHhhhh-----hhhccccCCCCCcccccccchHHHHHHh
Confidence 3456889999999999999998876 22222222333333321110 11112222222211 11122333332
Q ss_pred HcCCceEEEEEeCCCCCCccChhhhHhhccCCC-----------CCcEEEEEccc
Q 045633 96 SIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGL-----------CGSRILVTTRK 139 (794)
Q Consensus 96 ~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 139 (794)
...-+|+||+++..++..++.+...+..+. ..+-||+||.-
T Consensus 667 ---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 667 ---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred ---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 456799999997766666666666555432 34556667663
No 242
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.0088 Score=55.84 Aligned_cols=124 Identities=19% Similarity=0.172 Sum_probs=62.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC--CCHHHHHHHHHHHhc--CCCCC----------CCCHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP--FDEFRIAKAIIEGLE--GSLPN----------LGELN 87 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i~~~l~--~~~~~----------~~~~~ 87 (794)
.+++|.|+.|.|||||.+.++.- . ....+.+++.-... ...... ...++ .+... ...-+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~--~-~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRL--Y-DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC--C-CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHHH
Confidence 58999999999999999999873 2 22344444422110 011111 11111 11100 00111
Q ss_pred HHHHHHHhHcCCceEEEEEeCCCC-CCccChhhhHhhccCCCCCcEEEEEccchhhhhcccccceEEc
Q 045633 88 SLLEYIHTSIKGKKFFLILDDVWT-DDHSKWEPFHNCLMNGLCGSRILVTTRKETVARMMESTDVISI 154 (794)
Q Consensus 88 ~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 154 (794)
...-.+.+.+..++-++++|+-.. -+......+...+.....+..||++|.+...... .+.++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 122334555666778999998632 1222233333333332235678888888765543 3444443
No 243
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.017 Score=62.89 Aligned_cols=132 Identities=14% Similarity=0.064 Sum_probs=73.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC--CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP--FDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
.+-|.|.|+.|+|||+||+++++... ...+-.+.+|+++.- ...+.+++.+-. .+...++
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-----------------vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-----------------VFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH-----------------HHHHHHh
Confidence 35678999999999999999998433 334445667777642 223333333222 2234456
Q ss_pred CceEEEEEeCCCC------CCccChhh----hHhhc----cC-CCCCcE--EEEEccchhhhh-----cccccceEEccC
Q 045633 99 GKKFFLILDDVWT------DDHSKWEP----FHNCL----MN-GLCGSR--ILVTTRKETVAR-----MMESTDVISIKE 156 (794)
Q Consensus 99 ~~~~LlvlDdv~~------~~~~~~~~----l~~~l----~~-~~~gs~--iivTtr~~~v~~-----~~~~~~~~~l~~ 156 (794)
-.+-+|||||++. .+..+|.. +...+ .. ...+.+ +|.|........ ..-...+..+++
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 6789999999843 11122211 11111 11 122333 455555432211 111244678888
Q ss_pred CChHhHHHHHHHHh
Q 045633 157 LSEHECWSLFKRFA 170 (794)
Q Consensus 157 l~~~ea~~Lf~~~~ 170 (794)
+...+-.++++...
T Consensus 573 p~~~~R~~IL~~~~ 586 (952)
T KOG0735|consen 573 PAVTRRKEILTTIF 586 (952)
T ss_pred cchhHHHHHHHHHH
Confidence 88888888876644
No 244
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.71 E-value=0.0092 Score=60.54 Aligned_cols=88 Identities=17% Similarity=0.133 Sum_probs=48.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
..++|+|+|+.|+||||++..++........-..|..|+..... ...+.+....+.++.......+..++...+.+ +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-cc
Confidence 56799999999999999998887632212111356677765422 22333333344444333223344444444443 33
Q ss_pred CceEEEEEeCC
Q 045633 99 GKKFFLILDDV 109 (794)
Q Consensus 99 ~~~~LlvlDdv 109 (794)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 457777753
No 245
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.69 E-value=0.019 Score=61.47 Aligned_cols=88 Identities=20% Similarity=0.083 Sum_probs=49.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC-CCCHHHHHHHHHHHhcCCCCC---CCCHHHHHHHHH
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLPN---LGELNSLLEYIH 94 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 94 (794)
..+.+|.++|..|+||||+|..++. .....-..+..|++.. .+...+.++.++++++.+... ..+.........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4578999999999999999988886 3333222455565543 223344555666665543211 122222222222
Q ss_pred hHcCCceEEEEEeCC
Q 045633 95 TSIKGKKFFLILDDV 109 (794)
Q Consensus 95 ~~l~~~~~LlvlDdv 109 (794)
+...+. -+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333333 56777776
No 246
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.68 E-value=0.0082 Score=59.54 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=37.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCcccccc----CCeEEEEEecCCCCHHHHHHHHHHH
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN----FDKRIWVCVSDPFDEFRIAKAIIEG 75 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~----f~~~~~v~~~~~~~~~~~~~~i~~~ 75 (794)
..-.++.|+|.+|+|||++|.+++........ -..++|++....+....+ .++++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~ 76 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAER 76 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHH
Confidence 34578999999999999999888643112211 357999998776665433 333333
No 247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.68 E-value=0.0063 Score=57.26 Aligned_cols=125 Identities=16% Similarity=0.126 Sum_probs=63.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhc--CCCC-------------CCCCH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE--GSLP-------------NLGEL 86 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~--~~~~-------------~~~~~ 86 (794)
.+++|.|..|.|||||++.++.-. ....+.++++-. ........+-..++ .+.. ....-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 479999999999999999998732 122344443211 11111111111111 1100 01111
Q ss_pred HHHHHHHHhHcCCceEEEEEeCCCCC-CccChhhhHhhccCCCCCcEEEEEccchhhhhcccccceEEc
Q 045633 87 NSLLEYIHTSIKGKKFFLILDDVWTD-DHSKWEPFHNCLMNGLCGSRILVTTRKETVARMMESTDVISI 154 (794)
Q Consensus 87 ~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 154 (794)
+...-.+.+.+-.++-++++|+-... +....+.+...+.....+..||++|.+...... .++++.+
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 22233445556677888999987331 222223333333322236678888888765542 3444444
No 248
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.65 E-value=0.0036 Score=59.87 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=56.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
++|.|.|+.|.||||++..+.. .+.......+++- .++... .... ...+-.+.....+.....+.++..+....
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~-e~~~E~--~~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTI-EDPIEF--VHES-KRSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEE-cCCccc--cccC-ccceeeecccCCCccCHHHHHHHHhcCCc
Confidence 4789999999999999988776 3333333333332 111110 0000 00000000001112234556677777677
Q ss_pred EEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhh
Q 045633 102 FFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETV 142 (794)
Q Consensus 102 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 142 (794)
=.|++|++- +.+.+....... ..|..++.|+-....
T Consensus 76 d~ii~gEir--d~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 76 DVILVGEMR--DLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred CEEEEcCCC--CHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 799999993 334344333322 235557777665443
No 249
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.63 E-value=0.019 Score=54.72 Aligned_cols=145 Identities=16% Similarity=0.082 Sum_probs=79.5
Q ss_pred HHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCC
Q 045633 6 LKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGE 85 (794)
Q Consensus 6 i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 85 (794)
|++.|..+..=+...++-|..+|++|.|||.+|+++++. ..- -++.+. ..+-|.+..
T Consensus 136 i~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kv-----p~l~vk-------at~liGehV--------- 192 (368)
T COG1223 136 IMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKV-----PLLLVK-------ATELIGEHV--------- 192 (368)
T ss_pred HHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCC-----ceEEec-------hHHHHHHHh---------
Confidence 445555443334567899999999999999999999983 322 222221 111111111
Q ss_pred HHHHHHHHHhH----cCCceEEEEEeCCCCCC------------ccChhhhHhhccC--CCCCcEEEEEccchhhhhcc-
Q 045633 86 LNSLLEYIHTS----IKGKKFFLILDDVWTDD------------HSKWEPFHNCLMN--GLCGSRILVTTRKETVARMM- 146 (794)
Q Consensus 86 ~~~~~~~l~~~----l~~~~~LlvlDdv~~~~------------~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~~- 146 (794)
.+..+.+++. -+.-++++++|.++-.. .+...++...+.. .+.|...|-.|....+....
T Consensus 193 -Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~ai 271 (368)
T COG1223 193 -GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAI 271 (368)
T ss_pred -hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHH
Confidence 1222233322 24568999999884311 0111222222222 23455556666655544321
Q ss_pred --cccceEEccCCChHhHHHHHHHHhhCCC
Q 045633 147 --ESTDVISIKELSEHECWSLFKRFAFSGR 174 (794)
Q Consensus 147 --~~~~~~~l~~l~~~ea~~Lf~~~~~~~~ 174 (794)
.-..-++..--+++|-.+++..++..-.
T Consensus 272 RsRFEeEIEF~LP~~eEr~~ile~y~k~~P 301 (368)
T COG1223 272 RSRFEEEIEFKLPNDEERLEILEYYAKKFP 301 (368)
T ss_pred HhhhhheeeeeCCChHHHHHHHHHHHHhCC
Confidence 1133566666788999999988886544
No 250
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.019 Score=59.24 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=46.7
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhhc-ccccceEEccCCChHhHHHHHHHH
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VARM-MESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
+++-++|+|+++..+......+...+.....+..+|++|.+.. +... ......+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4445556688876666666666666655445566777777654 3322 233567889999999999888653
No 251
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.59 E-value=0.0066 Score=71.52 Aligned_cols=109 Identities=19% Similarity=0.264 Sum_probs=58.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCC---CCHHHHHHHHHhHc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNL---GELNSLLEYIHTSI 97 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l 97 (794)
...+.++|+.|+|||+||+.+++ .+-+.-...+-++.++-.....+ ..+.+..+.. .+...+...+++
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~-----~~l~g~~~gyvg~~~~~~l~~~~~~-- 609 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTV-----SKLIGSPPGYVGYNEGGQLTEAVRK-- 609 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccH-----HHhcCCCCcccCcCccchHHHHHHh--
Confidence 45677999999999999998886 32221233444555432221111 1111222211 122222233322
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCC-----------CCCcEEEEEccc
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNG-----------LCGSRILVTTRK 139 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 139 (794)
....+++||+++..+...+..+...+..+ ...+-+|+||..
T Consensus 610 -~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 610 -KPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred -CCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 23468999999777766677776666543 134556666664
No 252
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.59 E-value=0.01 Score=53.60 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=63.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC---CCHHHHHHHHHHHh-----cCC-CCCCCCH------
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP---FDEFRIAKAIIEGL-----EGS-LPNLGEL------ 86 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~---~~~~~~~~~i~~~l-----~~~-~~~~~~~------ 86 (794)
++|-|++..|.||||+|...+- +...+=..|.+|..-+. ..-...++.+ ..+ +.. .....+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 5788999999999999976665 33333234555554332 2222333332 011 000 0000111
Q ss_pred -HHHHHHHHhHc-CCceEEEEEeCCCC---CCccChhhhHhhccCCCCCcEEEEEccch
Q 045633 87 -NSLLEYIHTSI-KGKKFFLILDDVWT---DDHSKWEPFHNCLMNGLCGSRILVTTRKE 140 (794)
Q Consensus 87 -~~~~~~l~~~l-~~~~~LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 140 (794)
.+..+..++.+ .+.-=|+|||++-. -.....+.+...+.....+..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11223333333 34567999999832 12334566777777777788999999984
No 253
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.58 E-value=0.025 Score=52.46 Aligned_cols=123 Identities=14% Similarity=0.057 Sum_probs=61.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEE-------ecCCCCH--HHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC-------VSDPFDE--FRIAKAIIEGLEGSLPNLGELNSLLEY 92 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~-------~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~ 92 (794)
.+++|.|..|.|||||++.++.... ...+.+++. +.+.+.. ..+...+... .......-+...-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 4789999999999999999987421 112222221 1121111 1222222110 11122222333444
Q ss_pred HHhHcCCceEEEEEeCCCC-CCccChhhhHhhccCCCCCcEEEEEccchhhhhcccccceEEc
Q 045633 93 IHTSIKGKKFFLILDDVWT-DDHSKWEPFHNCLMNGLCGSRILVTTRKETVARMMESTDVISI 154 (794)
Q Consensus 93 l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l 154 (794)
+.+.+..++-++++|+--. -+......+...+... +..||++|.+...... .++++.+
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 5566666778889998632 1222223333333332 3568888887665432 3444444
No 254
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.005 Score=69.22 Aligned_cols=99 Identities=19% Similarity=0.314 Sum_probs=59.9
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHhCCccccccC---CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 045633 18 QNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF---DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIH 94 (794)
Q Consensus 18 ~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f---~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 94 (794)
....++....|+.|+|||.||++++. . -| +..+-++.|+. .-+.-...+-+.+++....++ ...+-
T Consensus 518 ~rPigsFlF~GPTGVGKTELAkaLA~--~---Lfg~e~aliR~DMSEy-----~EkHsVSrLIGaPPGYVGyee-GG~LT 586 (786)
T COG0542 518 NRPIGSFLFLGPTGVGKTELAKALAE--A---LFGDEQALIRIDMSEY-----MEKHSVSRLIGAPPGYVGYEE-GGQLT 586 (786)
T ss_pred CCCceEEEeeCCCcccHHHHHHHHHH--H---hcCCCccceeechHHH-----HHHHHHHHHhCCCCCCceecc-ccchh
Confidence 34567888899999999999999886 2 24 33444444431 112223344455444333222 22333
Q ss_pred hHcCCceE-EEEEeCCCCCCccChhhhHhhccCC
Q 045633 95 TSIKGKKF-FLILDDVWTDDHSKWEPFHNCLMNG 127 (794)
Q Consensus 95 ~~l~~~~~-LlvlDdv~~~~~~~~~~l~~~l~~~ 127 (794)
+..+.++| +|.||+++..+++.+.-+...+..+
T Consensus 587 EaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 587 EAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 34445666 8889999777777777777776654
No 255
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.018 Score=59.38 Aligned_cols=91 Identities=18% Similarity=0.111 Sum_probs=56.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC-CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI 97 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 97 (794)
.+.++|+|+|+.|+||||++..++.. ....-..+.+|+.... ....+.++..++.++.......+..++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 45789999999999999999888763 3222235777877543 23445556666665544323345555544444332
Q ss_pred -CCceEEEEEeCCCC
Q 045633 98 -KGKKFFLILDDVWT 111 (794)
Q Consensus 98 -~~~~~LlvlDdv~~ 111 (794)
.+..-+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 13457888998743
No 256
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.0065 Score=63.25 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=52.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccC--CeEEEEEecC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSD-PFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTS 96 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~~v~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 96 (794)
.-++++++|+.|+||||++.+++. +....+ ..+.+|+... .....+.++...+.++.......+..+....+. .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~ 212 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-E 212 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-H
Confidence 347999999999999999998887 332232 3566776543 234455666666666654333233333333333 3
Q ss_pred cCCceEEEEEeCCCC
Q 045633 97 IKGKKFFLILDDVWT 111 (794)
Q Consensus 97 l~~~~~LlvlDdv~~ 111 (794)
+.++ -+|++|....
T Consensus 213 l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 213 LRNK-HMVLIDTIGM 226 (374)
T ss_pred hcCC-CEEEEcCCCC
Confidence 3444 5566998843
No 257
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.015 Score=61.27 Aligned_cols=91 Identities=14% Similarity=0.079 Sum_probs=54.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCcccc--ccCCeEEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHh
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVI--ENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGSLPNLGELNSLLEYIHT 95 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~--~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 95 (794)
...++|.++|+.|+||||.+..++...... .+-..|..|+..... .....++..++.++.+.......++....+.+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 356899999999999999998887632221 112356667665422 22333555555555543333344444444444
Q ss_pred HcCCceEEEEEeCCCC
Q 045633 96 SIKGKKFFLILDDVWT 111 (794)
Q Consensus 96 ~l~~~~~LlvlDdv~~ 111 (794)
. .+.-+|++|....
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 4567899998854
No 258
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.0097 Score=62.37 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=49.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC-CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
..+++.++|++|+||||+|.+++........ ..+..++.... ......++..++.++.+.....+.......+. +
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G-~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~---~ 297 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMG-KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA---R 297 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH---h
Confidence 3578999999999999999888762212222 23445554332 22233334444444433222222223333332 2
Q ss_pred CceEEEEEeCC--CCCCccChhhhHhh
Q 045633 99 GKKFFLILDDV--WTDDHSKWEPFHNC 123 (794)
Q Consensus 99 ~~~~LlvlDdv--~~~~~~~~~~l~~~ 123 (794)
...-+||+|-. -..+..+.+.+...
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~ 324 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSF 324 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHH
Confidence 33455889943 22233444444433
No 259
>PHA02244 ATPase-like protein
Probab=96.51 E-value=0.01 Score=60.96 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+.++..++.... -|.|+|+.|+|||++|+++++
T Consensus 109 ~~ri~r~l~~~~--------PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 109 TADIAKIVNANI--------PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred HHHHHHHHhcCC--------CEEEECCCCCCHHHHHHHHHH
Confidence 345555555432 267899999999999999987
No 260
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.51 E-value=0.03 Score=65.46 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=79.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHH-HhHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYI-HTSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~ 98 (794)
..+-|.++|++|+|||++|+++++ +....| +.+... ++..... .+.+..+..+ ...-+
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~--e~~~~f-----i~v~~~--------~l~~~~v------Gese~~i~~~f~~A~~ 544 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVAT--ESGANF-----IAVRGP--------EILSKWV------GESEKAIREIFRKARQ 544 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--hcCCCE-----EEEehH--------HHhhccc------CcHHHHHHHHHHHHHh
Confidence 345578999999999999999998 333332 222210 1111111 1112222222 22234
Q ss_pred CceEEEEEeCCCCCC--------cc----ChhhhHhhccC--CCCCcEEEEEccchhhhhc--c---cccceEEccCCCh
Q 045633 99 GKKFFLILDDVWTDD--------HS----KWEPFHNCLMN--GLCGSRILVTTRKETVARM--M---ESTDVISIKELSE 159 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~--------~~----~~~~l~~~l~~--~~~gs~iivTtr~~~v~~~--~---~~~~~~~l~~l~~ 159 (794)
..+.+|++|+++... .. ....+...+.. ...+.-||.||........ + ..+..+.++..+.
T Consensus 545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 567999999985310 00 11223333332 1234456666655443221 1 2356788999999
Q ss_pred HhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCc
Q 045633 160 HECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLP 197 (794)
Q Consensus 160 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 197 (794)
++-.++|+.+...... ....++ ..+++.+.|.-
T Consensus 625 ~~R~~i~~~~~~~~~~-~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 625 EARKEIFKIHTRSMPL-AEDVDL----EELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHHHhcCCCC-CccCCH----HHHHHHcCCCC
Confidence 9999999776543222 111223 34555566554
No 261
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.03 Score=54.53 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=67.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCcc-----cc------ccC---CeEEEEEecC------CCCH----------------
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKD-----VI------ENF---DKRIWVCVSD------PFDE---------------- 65 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~-----~~------~~f---~~~~~v~~~~------~~~~---------------- 65 (794)
.+++|+|+.|.|||||.+.+..-.. +. ..+ ..+.||.-.. +.++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999987211 00 001 1344553211 0111
Q ss_pred ------HHHHHHHHHHhcCCC------CCCCCHHHHHHHHHhHcCCceEEEEEeCC----CCCCccChhhhHhhccCCCC
Q 045633 66 ------FRIAKAIIEGLEGSL------PNLGELNSLLEYIHTSIKGKKFFLILDDV----WTDDHSKWEPFHNCLMNGLC 129 (794)
Q Consensus 66 ------~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~~~~LlvlDdv----~~~~~~~~~~l~~~l~~~~~ 129 (794)
.+...+.++.++... .+...-+.-.-.+.+.|..+.=|++||.= +......+..+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 122333333333221 11112233344566788899999999973 222233344455555444
Q ss_pred CcEEEEEccchhhhh
Q 045633 130 GSRILVTTRKETVAR 144 (794)
Q Consensus 130 gs~iivTtr~~~v~~ 144 (794)
|.-||+.|-|-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 788999999865443
No 262
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.49 E-value=0.012 Score=57.26 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=69.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC-----CCCHHHHHHHHHHHhcCCC------CCCCCHHH-
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-----PFDEFRIAKAIIEGLEGSL------PNLGELNS- 88 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~~- 88 (794)
-.++||+|..|+||||+|+.+.. ...--.+.+++.-.+ .....+...++++.++... +..-+-.+
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 35899999999999999999986 333334445444221 1223344555555555331 11112222
Q ss_pred HHHHHHhHcCCceEEEEEeCCCCCC----ccChhhhHhhccCCCCCcEEEEEccchhhhhcc
Q 045633 89 LLEYIHTSIKGKKFFLILDDVWTDD----HSKWEPFHNCLMNGLCGSRILVTTRKETVARMM 146 (794)
Q Consensus 89 ~~~~l~~~l~~~~~LlvlDdv~~~~----~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 146 (794)
-.-.+.+.+.-++-++|.|..-+.- +.+.-.+...+.. ..|-..++.|-+-.+.+.+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 2345667788899999999873311 1112222222222 2356688888887777654
No 263
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.48 E-value=0.025 Score=50.97 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=56.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
.+++|.|..|.|||||++.+.... ....+.++++-.. .+.-. .+...-+...-.+.+.+..++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcCC
Confidence 588999999999999999998732 2234444442100 00000 001122222333455566677
Q ss_pred EEEEEeCCCC-CCccChhhhHhhccCCCCCcEEEEEccchhhhh
Q 045633 102 FFLILDDVWT-DDHSKWEPFHNCLMNGLCGSRILVTTRKETVAR 144 (794)
Q Consensus 102 ~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 144 (794)
-++++|+-.. -+......+...+... +..||++|.+.....
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 7899998632 1222333344444332 245888887765443
No 264
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.48 E-value=0.0065 Score=56.19 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=46.2
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCC---CCHHHHHHHHHhHcCC
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNL---GELNSLLEYIHTSIKG 99 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~ 99 (794)
+|.|.|.+|+||||+|..+... ... .++++.-.. +...+..+.|........... +...++...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 5789999999999999888762 211 245554443 344456666655554443222 2222344444443333
Q ss_pred ceEEEEEeCC
Q 045633 100 KKFFLILDDV 109 (794)
Q Consensus 100 ~~~LlvlDdv 109 (794)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 336888986
No 265
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.077 Score=53.88 Aligned_cols=152 Identities=13% Similarity=0.087 Sum_probs=89.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccc----------cCCeEEEEEe-cCCCCHHHHHHHHHHHhcCCCCCCCCHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIE----------NFDKRIWVCV-SDPFDEFRIAKAIIEGLEGSLPNLGELNS 88 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~----------~f~~~~~v~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 88 (794)
-.++..++|..|.||+++|+++.+ .+-+ +-+.+.+++. +.... +++
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~--~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~---------------------vd~ 73 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLN--KFNNLQITNLNEQELPANIILFDIFDKDLS---------------------KSE 73 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHH--HHcCcCCCCCCCCCCCcceEEeccCCCcCC---------------------HHH
Confidence 346666999999999999988876 3211 1112233321 11111 222
Q ss_pred HHHHHHhH----c-CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc-hhhhhc-ccccceEEccCCChHh
Q 045633 89 LLEYIHTS----I-KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK-ETVARM-MESTDVISIKELSEHE 161 (794)
Q Consensus 89 ~~~~l~~~----l-~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~-~~~~~~~~l~~l~~~e 161 (794)
+...+... . ++++-++|+|+++.........+...+....+++.+|++|.+ ..+... .....++++.++++++
T Consensus 74 Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~ 153 (299)
T PRK07132 74 FLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQK 153 (299)
T ss_pred HHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHH
Confidence 22222211 1 247788999999666655667788787776677777765544 333322 3446789999999999
Q ss_pred HHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHH
Q 045633 162 CWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIG 204 (794)
Q Consensus 162 a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 204 (794)
..+.+.... . . ++.+..++...+|.-.|+..+.
T Consensus 154 l~~~l~~~~----~-~-----~~~a~~~a~~~~~~~~a~~~~~ 186 (299)
T PRK07132 154 ILAKLLSKN----K-E-----KEYNWFYAYIFSNFEQAEKYIN 186 (299)
T ss_pred HHHHHHHcC----C-C-----hhHHHHHHHHcCCHHHHHHHHh
Confidence 988776531 1 1 1234555556666445555543
No 266
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.48 E-value=0.0076 Score=61.39 Aligned_cols=83 Identities=22% Similarity=0.250 Sum_probs=52.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL-----PNLGELNSLLEYIH 94 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 94 (794)
.-+++-|+|++|+||||||.+++. .....-..++||+....++.. .+++++... ......++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 447899999999999999987765 233333567899877655542 234443221 11234455555555
Q ss_pred hHcC-CceEEEEEeCC
Q 045633 95 TSIK-GKKFFLILDDV 109 (794)
Q Consensus 95 ~~l~-~~~~LlvlDdv 109 (794)
...+ +..-+||+|.+
T Consensus 127 ~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHhhccCCcEEEEcch
Confidence 5443 45678999987
No 267
>PRK08233 hypothetical protein; Provisional
Probab=96.47 E-value=0.0078 Score=56.97 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999873
No 268
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.47 E-value=0.012 Score=54.45 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=60.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC--CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF--DEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
.+++|.|..|.|||||.+.++.. .....+.+++.-.... +..+.. ...++-. .+...-+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~-~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDAR---RAGIAMV-YQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHH---hcCeEEE-EecCHHHHHHHHHHHHHhc
Confidence 47999999999999999999873 2234455555321111 111111 1111110 0122222333445556666
Q ss_pred ceEEEEEeCCCC-CCccChhhhHhhccCC-CCCcEEEEEccchhhh
Q 045633 100 KKFFLILDDVWT-DDHSKWEPFHNCLMNG-LCGSRILVTTRKETVA 143 (794)
Q Consensus 100 ~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~ 143 (794)
++-++++|+--. -+......+...+... ..|..||++|.+....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 778899998732 1222233333333322 2356788888886543
No 269
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.47 E-value=0.0051 Score=55.07 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=49.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccc-cccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDV-IENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~-~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
..|.|+|..|+||+++|+.++..... ...|.. +++.... . +.+.+. +
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~~------~--------------------~~l~~a---~ 69 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASLP------A--------------------ELLEQA---K 69 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCTC------H--------------------HHHHHC---T
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhCc------H--------------------HHHHHc---C
Confidence 34779999999999999988763221 111111 1111111 1 111111 3
Q ss_pred eEEEEEeCCCCCCccChhhhHhhccCC-CCCcEEEEEccch
Q 045633 101 KFFLILDDVWTDDHSKWEPFHNCLMNG-LCGSRILVTTRKE 140 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~~ 140 (794)
.--++++|++.-.......+...+... ....|+|.||+..
T Consensus 70 ~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 70 GGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp TSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 334779999766555556666666533 4578999998853
No 270
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.46 E-value=0.02 Score=57.59 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=50.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC-CCHHHHHHHHHHHhcCCC---CCCCCHHH-HHHHH
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGSL---PNLGELNS-LLEYI 93 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~-~~~~l 93 (794)
.+.++|+++|++|+||||++..++. .....-..+.+++.... ....+.++..++..+... ....+... ....+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 4678999999999999999988876 33333235667765432 112233344445444221 11122222 22334
Q ss_pred HhHcCCceEEEEEeCCC
Q 045633 94 HTSIKGKKFFLILDDVW 110 (794)
Q Consensus 94 ~~~l~~~~~LlvlDdv~ 110 (794)
........-++|+|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 43334455678889773
No 271
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.46 E-value=0.015 Score=54.20 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=62.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC---cccccc---C--CeEEEEEecCCCCHHHHHHHHHHHhcCCCC--C-----CCCH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND---KDVIEN---F--DKRIWVCVSDPFDEFRIAKAIIEGLEGSLP--N-----LGEL 86 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~---~~~~~~---f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~--~-----~~~~ 86 (794)
.+++|+|+.|+|||||.+.+..+ ..+... | ..+.|+. + .+.+..++.... + ...-
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 57899999999999999988632 111111 1 0122321 1 345555553311 1 0111
Q ss_pred HHHHHHHHhHcCCc--eEEEEEeCCCC-CCccChhhhHhhccCC-CCCcEEEEEccchhhhhcccccceEEc
Q 045633 87 NSLLEYIHTSIKGK--KFFLILDDVWT-DDHSKWEPFHNCLMNG-LCGSRILVTTRKETVARMMESTDVISI 154 (794)
Q Consensus 87 ~~~~~~l~~~l~~~--~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~~~~~~~~l 154 (794)
+...-.+.+.+..+ .-++++|+--. -+....+.+...+... ..|..||++|.+...... .+.++.+
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 22233344555556 77888898632 1222233333333321 136678889888766542 3445544
No 272
>PRK10867 signal recognition particle protein; Provisional
Probab=96.45 E-value=0.017 Score=61.68 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=27.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCcccccc-CCeEEEEEec
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN-FDKRIWVCVS 60 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~~v~~~ 60 (794)
..+.+|.++|+.|+||||.|..++. ..... -..+..|++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~--~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK--YLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH--HHHHhcCCcEEEEEcc
Confidence 4578999999999999998877765 23322 2235555554
No 273
>PRK14974 cell division protein FtsY; Provisional
Probab=96.44 E-value=0.019 Score=59.24 Aligned_cols=91 Identities=14% Similarity=0.055 Sum_probs=48.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC-CCCHHHHHHHHHHHhcCCCCC---CCCHHHH-HHHH
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLPN---LGELNSL-LEYI 93 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~-~~~l 93 (794)
.++++|+++|+.|+||||++..++. .....=..++.++... .....+.++..+..++..... ..+.... .+.+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 3578999999999999998877776 2322211344554332 122334455566666543211 1222222 2222
Q ss_pred HhHcCCceEEEEEeCCCC
Q 045633 94 HTSIKGKKFFLILDDVWT 111 (794)
Q Consensus 94 ~~~l~~~~~LlvlDdv~~ 111 (794)
........-+|++|-...
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 222222233899998844
No 274
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.43 E-value=0.024 Score=65.17 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=51.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCC---CHHHHHHHHHhH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLG---ELNSLLEYIHTS 96 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~~ 96 (794)
....+.++|+.|+|||++|+.++. ... ...+.++++...... .+ ..+.+..+... ....+.+.++
T Consensus 487 p~~~~Lf~GP~GvGKT~lAk~LA~--~l~---~~~i~id~se~~~~~----~~-~~LiG~~~gyvg~~~~g~L~~~v~-- 554 (758)
T PRK11034 487 PVGSFLFAGPTGVGKTEVTVQLSK--ALG---IELLRFDMSEYMERH----TV-SRLIGAPPGYVGFDQGGLLTDAVI-- 554 (758)
T ss_pred CcceEEEECCCCCCHHHHHHHHHH--HhC---CCcEEeechhhcccc----cH-HHHcCCCCCcccccccchHHHHHH--
Confidence 346788999999999999999987 332 223445544322111 11 22222222111 1111222222
Q ss_pred cCCceEEEEEeCCCCCCccChhhhHhhccC
Q 045633 97 IKGKKFFLILDDVWTDDHSKWEPFHNCLMN 126 (794)
Q Consensus 97 l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~ 126 (794)
+...-+|+||+++......+..+...+..
T Consensus 555 -~~p~sVlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 555 -KHPHAVLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred -hCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence 23457999999977666666666665543
No 275
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.41 E-value=0.014 Score=53.80 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=45.4
Q ss_pred EEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCC---CCHHHHHHHHHhHcCCc
Q 045633 24 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNL---GELNSLLEYIHTSIKGK 100 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~~ 100 (794)
+.|.|..|+|||++|.++... ....++|+.-.+..+. +..+.|........... +...++.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 679999999999999888752 2245777776665544 45555544333332222 1222333333222 2 2
Q ss_pred eEEEEEeCC
Q 045633 101 KFFLILDDV 109 (794)
Q Consensus 101 ~~LlvlDdv 109 (794)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999986
No 276
>PRK07667 uridine kinase; Provisional
Probab=96.41 E-value=0.0054 Score=58.46 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 466777776543 3558999999999999999998887
No 277
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.40 E-value=0.0091 Score=60.86 Aligned_cols=83 Identities=22% Similarity=0.243 Sum_probs=52.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL-----PNLGELNSLLEYIH 94 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 94 (794)
.-+++-|+|++|+||||||.+++. .....-..++||+....++.. .++.++... ....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 457888999999999999987765 233334568899887665542 233333221 11224455555555
Q ss_pred hHcC-CceEEEEEeCC
Q 045633 95 TSIK-GKKFFLILDDV 109 (794)
Q Consensus 95 ~~l~-~~~~LlvlDdv 109 (794)
...+ +.--+||+|.+
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 4443 45678999987
No 278
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.091 Score=54.82 Aligned_cols=150 Identities=16% Similarity=0.120 Sum_probs=76.1
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCceE
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKKF 102 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 102 (794)
=-.++||+|.|||++..++++.. .|+ ++=+.++...+-.+ ++.++.. ...+-
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L----~yd-IydLeLt~v~~n~d-Lr~LL~~----------------------t~~kS 288 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL----NYD-IYDLELTEVKLDSD-LRHLLLA----------------------TPNKS 288 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc----CCc-eEEeeeccccCcHH-HHHHHHh----------------------CCCCc
Confidence 34589999999999999999832 233 33333333222222 2222221 23456
Q ss_pred EEEEeCCCCC--------C----------ccChhhhHhhccC--CCC-CcEEEE-Eccchhhh-----hcccccceEEcc
Q 045633 103 FLILDDVWTD--------D----------HSKWEPFHNCLMN--GLC-GSRILV-TTRKETVA-----RMMESTDVISIK 155 (794)
Q Consensus 103 LlvlDdv~~~--------~----------~~~~~~l~~~l~~--~~~-gs~iiv-Ttr~~~v~-----~~~~~~~~~~l~ 155 (794)
+||+.|++.. . ...+..+..++.. ... +-|||| ||...+-. +.-..+..+.+.
T Consensus 289 IivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mg 368 (457)
T KOG0743|consen 289 ILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMG 368 (457)
T ss_pred EEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcC
Confidence 6777777421 0 0122234444332 112 346665 55544322 111224567777
Q ss_pred CCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhh
Q 045633 156 ELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLL 207 (794)
Q Consensus 156 ~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 207 (794)
-=+.+.-..|+..+.....+ ..++.+|.+...|.-+.=..++..|
T Consensus 369 yCtf~~fK~La~nYL~~~~~-------h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 369 YCTFEAFKTLASNYLGIEED-------HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCCHHHHHHHHHHhcCCCCC-------cchhHHHHHHhhcCccCHHHHHHHH
Confidence 77778888888887644331 2344445554455544444444433
No 279
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.36 E-value=0.049 Score=55.37 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=67.7
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCH-HHHHHHHHhHcCCce
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGEL-NSLLEYIHTSIKGKK 101 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l~~~~ 101 (794)
.|.|.|+.|+||||+|+.++. +.... .+.|++....+..++.-.-.-.+.... ..... +.. +-.. ..+.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~DliG~~~~~l~~g~-~~~~f~~Gp---L~~A-~~~g 135 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDLVGKDAIVLKDGK-QITEFRDGI---LPWA-LQHN 135 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhcCCCceeeccCCc-ceeEEecCc---chhH-HhCC
Confidence 488999999999999999987 44333 234455443333222111000000000 00000 000 0001 1245
Q ss_pred EEEEEeCCCCCCccChhhhHhhccC--------------CCCCcEEEEEccchhhhh--------------ccccc-ceE
Q 045633 102 FFLILDDVWTDDHSKWEPFHNCLMN--------------GLCGSRILVTTRKETVAR--------------MMEST-DVI 152 (794)
Q Consensus 102 ~LlvlDdv~~~~~~~~~~l~~~l~~--------------~~~gs~iivTtr~~~v~~--------------~~~~~-~~~ 152 (794)
..+++|++....+.....+...+.. ..+..++|.|........ .+... .++
T Consensus 136 ~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~ 215 (327)
T TIGR01650 136 VALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVT 215 (327)
T ss_pred eEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEe
Confidence 7789998865444433333322221 113456666665422100 01112 245
Q ss_pred EccCCChHhHHHHHHHHh
Q 045633 153 SIKELSEHECWSLFKRFA 170 (794)
Q Consensus 153 ~l~~l~~~ea~~Lf~~~~ 170 (794)
.+..++.++-.+++....
T Consensus 216 ~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 216 TLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eCCCCCHHHHHHHHHhhc
Confidence 788888988888887654
No 280
>PRK06696 uridine kinase; Validated
Probab=96.33 E-value=0.0057 Score=59.91 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 4 NTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 4 ~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++|.+.+... ...++.+|+|.|.+|+||||+|+++.+
T Consensus 8 ~~la~~~~~~---~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 8 KELAEHILTL---NLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHh---CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555432 234788999999999999999999987
No 281
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.32 E-value=0.00011 Score=79.12 Aligned_cols=84 Identities=20% Similarity=0.161 Sum_probs=60.9
Q ss_pred hccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCcc
Q 045633 553 NAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLK 632 (794)
Q Consensus 553 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~ 632 (794)
..++.-++.+++|+|+.|.+. .++.+..+++|+.|+|+.|....+ |..-..-.+|.
T Consensus 180 D~SLqll~ale~LnLshNk~~---------------------~v~~Lr~l~~LkhLDlsyN~L~~v---p~l~~~gc~L~ 235 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFT---------------------KVDNLRRLPKLKHLDLSYNCLRHV---PQLSMVGCKLQ 235 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhh---------------------hhHHHHhcccccccccccchhccc---cccchhhhhhe
Confidence 345556678888888888743 234677788888888888877666 55443334588
Q ss_pred EEeecCCCCCCcCCCCCCCCCcceeeecc
Q 045633 633 RLDLAFCPRCEIMPPLGKLPSLEILRIAE 661 (794)
Q Consensus 633 ~L~L~~~~~l~~l~~l~~L~~L~~L~l~~ 661 (794)
.|.|++| .++.+-.+.+|.+|+.||++.
T Consensus 236 ~L~lrnN-~l~tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 236 LLNLRNN-ALTTLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred eeeeccc-HHHhhhhHHhhhhhhccchhH
Confidence 8888888 566677778888888888885
No 282
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.32 E-value=0.035 Score=50.59 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=35.7
Q ss_pred HHHHHHHHHhHcCCceEEEEEeCCCC-CCccChhhhHhhccC-CCCCcEEEEEccchhhhhcc
Q 045633 86 LNSLLEYIHTSIKGKKFFLILDDVWT-DDHSKWEPFHNCLMN-GLCGSRILVTTRKETVARMM 146 (794)
Q Consensus 86 ~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~ 146 (794)
-++-.-.|.+.+-+++-+++-|.=-. -+++.-..+...+.. ...|..||++|-+..+...+
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 34444556666777888888885311 112222223333322 23488999999999887765
No 283
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.32 E-value=0.016 Score=54.27 Aligned_cols=126 Identities=14% Similarity=0.188 Sum_probs=61.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC--CCCHHHHHHHHHHHhcCCCCC----------CCCHHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD--PFDEFRIAKAIIEGLEGSLPN----------LGELNSL 89 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~--~~~~~~~~~~i~~~l~~~~~~----------~~~~~~~ 89 (794)
.+++|.|..|.|||||++.++.- .....+.++++-.. ........+.+. +..+... ...-+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~i~--~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNELGDHVG--YLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHHHHhheE--EECCCCccccCcHHHHCcCHHHHH
Confidence 47999999999999999999873 22233444432111 111111111110 0011110 0111222
Q ss_pred HHHHHhHcCCceEEEEEeCCCC-CCccChhhhHhhccCC-CCCcEEEEEccchhhhhcccccceEEc
Q 045633 90 LEYIHTSIKGKKFFLILDDVWT-DDHSKWEPFHNCLMNG-LCGSRILVTTRKETVARMMESTDVISI 154 (794)
Q Consensus 90 ~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~~~~~~~~~l 154 (794)
.-.+.+.+..++-++++|+-.. -+......+...+... ..|..||++|.+...... .++++.+
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~--~d~v~~l 168 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS--ADRILVL 168 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 3334455666777899998732 1222222233333221 236678888888765542 3444444
No 284
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.32 E-value=0.0087 Score=59.21 Aligned_cols=87 Identities=23% Similarity=0.238 Sum_probs=52.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-----------------
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP----------------- 81 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~----------------- 81 (794)
..-.++.|+|.+|+|||++|.++.. ....+=..++|++..+. ..++.+.+ ++++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~--~~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVY--GALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHH--HHHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 3567899999999999999988865 22223356889988653 34444443 22221100
Q ss_pred ---CCCCHHHHHHHHHhHcCC-ceEEEEEeCCC
Q 045633 82 ---NLGELNSLLEYIHTSIKG-KKFFLILDDVW 110 (794)
Q Consensus 82 ---~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 110 (794)
.....++....+.+.... +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 012234555666665543 55689999873
No 285
>PRK09354 recA recombinase A; Provisional
Probab=96.31 E-value=0.012 Score=60.56 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=53.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSL-----PNLGELNSLLEYIH 94 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 94 (794)
.-+++-|+|+.|+||||||.+++. .....-..++||+....++.. .++.++... ......++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 456888999999999999987765 233334568899987766642 334443221 11123555555555
Q ss_pred hHcC-CceEEEEEeCC
Q 045633 95 TSIK-GKKFFLILDDV 109 (794)
Q Consensus 95 ~~l~-~~~~LlvlDdv 109 (794)
...+ ++--+||+|-+
T Consensus 132 ~li~s~~~~lIVIDSv 147 (349)
T PRK09354 132 TLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHhhcCCCCEEEEeCh
Confidence 5443 45678999998
No 286
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.31 E-value=0.14 Score=49.71 Aligned_cols=210 Identities=11% Similarity=0.126 Sum_probs=113.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCc----cccccCCeEEEEEecCC---------------------CCHHHHHHHHH
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDK----DVIENFDKRIWVCVSDP---------------------FDEFRIAKAII 73 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~----~~~~~f~~~~~v~~~~~---------------------~~~~~~~~~i~ 73 (794)
++..-..+||+.|.||-|.+..+.++. -.+-+-+..-|.+-+.. ..-+.+.++++
T Consensus 32 ~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQell 111 (351)
T KOG2035|consen 32 GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELL 111 (351)
T ss_pred CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHH
Confidence 467788899999999999886665531 11111233344432221 11123444444
Q ss_pred HHhcCCCCCCCCHHHHHHHHHhHcCCceE-EEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch--hhhhcccccc
Q 045633 74 EGLEGSLPNLGELNSLLEYIHTSIKGKKF-FLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE--TVARMMESTD 150 (794)
Q Consensus 74 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~--~v~~~~~~~~ 150 (794)
.++....+-. .-..+.| ++|+-.++.-..++-.++..........+|+|+...+. -+...-...-
T Consensus 112 KevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl 179 (351)
T KOG2035|consen 112 KEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCL 179 (351)
T ss_pred HHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhhee
Confidence 4443321100 0012233 45555554433344455666655556678888755432 1222222345
Q ss_pred eEEccCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCc-hHHHHHHhhhcCC----------CCHHHHHHH
Q 045633 151 VISIKELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLP-LAAKTIGSLLRFK----------KTREEWQLI 219 (794)
Q Consensus 151 ~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l~~~----------~~~~~w~~~ 219 (794)
.+.++..+++|....++..+...+... + .+++.+|+++++|.- .||-++ ...+.. -..-+|+-.
T Consensus 180 ~iRvpaps~eeI~~vl~~v~~kE~l~l--p--~~~l~rIa~kS~~nLRrAllml-E~~~~~n~~~~a~~~~i~~~dWe~~ 254 (351)
T KOG2035|consen 180 FIRVPAPSDEEITSVLSKVLKKEGLQL--P--KELLKRIAEKSNRNLRRALLML-EAVRVNNEPFTANSQVIPKPDWEIY 254 (351)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhcccC--c--HHHHHHHHHHhcccHHHHHHHH-HHHHhccccccccCCCCCCccHHHH
Confidence 788999999999999988876655433 2 678899999988764 333322 222111 134689877
Q ss_pred Hhhhhcccch--hcccchhHHHhhhcCC
Q 045633 220 LNSEMWQLED--FEKNLLAPLQLSYNDL 245 (794)
Q Consensus 220 l~~~~~~~~~--~~~~~~~~l~~sy~~L 245 (794)
..+....... ....+..+=..-|+-|
T Consensus 255 i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 255 IQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 7654433221 1234445545555544
No 287
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.31 E-value=0.022 Score=61.55 Aligned_cols=164 Identities=16% Similarity=0.210 Sum_probs=91.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhc--------CCCCCCCCHHHHHHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE--------GSLPNLGELNSLLEYI 93 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~--------~~~~~~~~~~~~~~~l 93 (794)
.-....|+-|+||||+|+-++. .+... . + ...++++....-+.|...-. ......+++.++.+.+
T Consensus 39 hAYlfsG~RGvGKTt~Ari~Ak--alNC~--~--~-~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v 111 (515)
T COG2812 39 HAYLFSGPRGVGKTTIARILAK--ALNCE--N--G-PTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKV 111 (515)
T ss_pred hhhhhcCCCCcCchhHHHHHHH--HhcCC--C--C-CCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHh
Confidence 4455799999999999988776 22111 0 0 11122222222233322200 0111112222222222
Q ss_pred HhH-cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhh-cccccceEEccCCChHhHHHHHHHHh
Q 045633 94 HTS-IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MMESTDVISIKELSEHECWSLFKRFA 170 (794)
Q Consensus 94 ~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~ 170 (794)
.-. .++|--+.|+|+|.......|.++...+..-......|+.|++.+ +.. .......|..+.++.++-...+...+
T Consensus 112 ~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~ 191 (515)
T COG2812 112 NYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAIL 191 (515)
T ss_pred ccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHH
Confidence 211 146677889999977677778888777766555666676666643 322 23456789999999999888888877
Q ss_pred hCCCCCCChhHHHHHHHHHHhhcCCC
Q 045633 171 FSGRSPTDCEQLEEIGRKIVGKCKGL 196 (794)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~g~ 196 (794)
........ .+....|++..+|-
T Consensus 192 ~~E~I~~e----~~aL~~ia~~a~Gs 213 (515)
T COG2812 192 DKEGINIE----EDALSLIARAAEGS 213 (515)
T ss_pred HhcCCccC----HHHHHHHHHHcCCC
Confidence 55544332 23344455555553
No 288
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.30 E-value=0.0021 Score=61.29 Aligned_cols=109 Identities=19% Similarity=0.157 Sum_probs=53.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc---
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI--- 97 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--- 97 (794)
-+++.|.|.+|.||||+++.+.. .+...=..++++ ....... ..+.+..+... ..+..........-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~--~~~~~g~~v~~~-apT~~Aa----~~L~~~~~~~a---~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAE--ALEAAGKRVIGL-APTNKAA----KELREKTGIEA---QTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHH--HHHHTT--EEEE-ESSHHHH----HHHHHHHTS-E---EEHHHHTTEECCEECCS
T ss_pred CeEEEEEECCCCCHHHHHHHHHH--HHHhCCCeEEEE-CCcHHHH----HHHHHhhCcch---hhHHHHHhcCCcccccc
Confidence 35788999999999999988876 333331233333 3222222 22333322110 01111000000000
Q ss_pred ---CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh
Q 045633 98 ---KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET 141 (794)
Q Consensus 98 ---~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 141 (794)
..++-+||+|++...+...+..+...... .|+|+|+.--...
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 12345999999966555666666665544 3778887765443
No 289
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.29 E-value=0.021 Score=60.95 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=34.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccc-cCCeEEEEEecCC-CCHHHHHHHHHHHhc
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIE-NFDKRIWVCVSDP-FDEFRIAKAIIEGLE 77 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~v~~~~~-~~~~~~~~~i~~~l~ 77 (794)
..+.++.++|..|+||||.|..++. .... .-..+..|++... +...+.++..+...+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~--~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~g 155 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAY--YLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVG 155 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH--HHHHhCCCeEEEEeccccchHHHHHHHHHHHhcC
Confidence 3578999999999999999977776 2221 1124555655432 222333444444443
No 290
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.056 Score=51.01 Aligned_cols=65 Identities=14% Similarity=0.069 Sum_probs=38.1
Q ss_pred HHHHHHhHcCCceEEEEEeCCCCC-CccChhhhHhhccC-CCCCcEEEEEccchhhhhcccccceEE
Q 045633 89 LLEYIHTSIKGKKFFLILDDVWTD-DHSKWEPFHNCLMN-GLCGSRILVTTRKETVARMMESTDVIS 153 (794)
Q Consensus 89 ~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~~~~~ 153 (794)
....+.+.+--++-+.|||..++. +.+.+..+...+.. ..+|+-+|+.|...+++....++.++-
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 344555555567889999998552 22223223222222 234666888888888888776655543
No 291
>PRK13695 putative NTPase; Provisional
Probab=96.27 E-value=0.0057 Score=57.33 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHhCC
Q 045633 24 ISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~~ 44 (794)
|+|+|.+|+|||||++.+++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998763
No 292
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.26 E-value=0.023 Score=66.45 Aligned_cols=153 Identities=15% Similarity=0.091 Sum_probs=75.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
..+-|.++|++|+|||++|+.+++ ..... .+.++... + .....+ .....+...+......
T Consensus 211 ~~~giLL~GppGtGKT~laraia~--~~~~~---~i~i~~~~------i----~~~~~g-----~~~~~l~~lf~~a~~~ 270 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVAN--EAGAY---FISINGPE------I----MSKYYG-----ESEERLREIFKEAEEN 270 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHH--HhCCe---EEEEecHH------H----hccccc-----HHHHHHHHHHHHHHhc
Confidence 345688999999999999999987 33222 22333211 1 000000 0111122222233345
Q ss_pred ceEEEEEeCCCCCCc------c-----ChhhhHhhccCC-CCCcEEEE-Eccchh-hhhcc----cccceEEccCCChHh
Q 045633 100 KKFFLILDDVWTDDH------S-----KWEPFHNCLMNG-LCGSRILV-TTRKET-VARMM----ESTDVISIKELSEHE 161 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~------~-----~~~~l~~~l~~~-~~gs~iiv-Ttr~~~-v~~~~----~~~~~~~l~~l~~~e 161 (794)
.+.+|++|+++.... . ....+...+... ..+..++| ||.... +...+ .....+.+...+.++
T Consensus 271 ~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~ 350 (733)
T TIGR01243 271 APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRA 350 (733)
T ss_pred CCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHH
Confidence 568999999843210 0 112233333222 12333444 444322 11111 124567888888888
Q ss_pred HHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCc
Q 045633 162 CWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLP 197 (794)
Q Consensus 162 a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 197 (794)
-.+++......... ... .....+++.+.|..
T Consensus 351 R~~Il~~~~~~~~l-~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 351 RKEILKVHTRNMPL-AED----VDLDKLAEVTHGFV 381 (733)
T ss_pred HHHHHHHHhcCCCC-ccc----cCHHHHHHhCCCCC
Confidence 88888865432211 111 12345666677764
No 293
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.016 Score=62.45 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=47.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
.-++|+|+|++|+||||++.+++...........+..++..... ...+.++...+.++.......+..++...+.+ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 45799999999999999998877621111112346666653321 22233333333333322222233344444433 33
Q ss_pred CceEEEEEeCCC
Q 045633 99 GKKFFLILDDVW 110 (794)
Q Consensus 99 ~~~~LlvlDdv~ 110 (794)
+.-+||+|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 35688889873
No 294
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.24 E-value=0.062 Score=53.70 Aligned_cols=114 Identities=16% Similarity=0.058 Sum_probs=60.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcC-CC-------CCCCCHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG-SL-------PNLGELNSLLE 91 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~-~~-------~~~~~~~~~~~ 91 (794)
+.+-++|+|+.|.||||+.+.++. .+. ...+.+++.-.+-... +...+++..... .. ...+.... ..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~--~~~-~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-~~ 184 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLAR--ILS-TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPK-AE 184 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhC--ccC-CCCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchH-HH
Confidence 467899999999999999999987 332 2233444421111000 111233322211 10 01111111 11
Q ss_pred HHHhHc-CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhh
Q 045633 92 YIHTSI-KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVA 143 (794)
Q Consensus 92 ~l~~~l-~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 143 (794)
.+...+ ...+-++++|.+ ...+.+..+...+. .|..||+||-+..+.
T Consensus 185 ~~~~~i~~~~P~villDE~--~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEI--GREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHhCCCCEEEEeCC--CcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 222222 257889999998 33444555555543 377899999976553
No 295
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.23 E-value=0.0036 Score=64.18 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCC
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
..+++++++...........++++++|++|+||||||+.+++.
T Consensus 59 ~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 59 AIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567777776544322345689999999999999999998873
No 296
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.23 E-value=0.04 Score=55.99 Aligned_cols=51 Identities=22% Similarity=0.213 Sum_probs=34.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCcccccc-CCeEEEEEecCCCCHHHHHHHHHHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIEN-FDKRIWVCVSDPFDEFRIAKAIIEG 75 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~i~~~ 75 (794)
-.++.|.|.+|+||||+|.+++.+ .... =..++|+++.. ...++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~--~~~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALD--LITQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH--HHHhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 348889999999999999887763 2222 34688988765 344555555444
No 297
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.22 E-value=0.018 Score=57.23 Aligned_cols=88 Identities=20% Similarity=0.141 Sum_probs=55.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHH-hc----CCCCCCCCHHHHHHHH
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEG-LE----GSLPNLGELNSLLEYI 93 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~-l~----~~~~~~~~~~~~~~~l 93 (794)
+.-+++=|+|+.|.||||+|.+++- .....-..++||+....++...+. +++.. +. .+........++++.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 4568899999999999999977665 233334478999998877776543 33333 21 1222222233334444
Q ss_pred HhHcCCceEEEEEeCC
Q 045633 94 HTSIKGKKFFLILDDV 109 (794)
Q Consensus 94 ~~~l~~~~~LlvlDdv 109 (794)
.+....+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 4443445678999988
No 298
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.20 E-value=0.05 Score=52.09 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=39.1
Q ss_pred HHHHHHHHhHcCCceEEEEEeCCCC-CCccChhhhHhhccCC--CCCcEEEEEccchhhhhcccccceEEcc
Q 045633 87 NSLLEYIHTSIKGKKFFLILDDVWT-DDHSKWEPFHNCLMNG--LCGSRILVTTRKETVARMMESTDVISIK 155 (794)
Q Consensus 87 ~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~~~~~~~l~ 155 (794)
++-.-.+.+.+-..+-+|+.|+=-. -+...-+.+...+... ..|..||+.|-+..++..+ ++++.+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 3444556677788888999996411 1112222333333322 3367899999999998864 3444443
No 299
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.20 E-value=0.019 Score=62.91 Aligned_cols=51 Identities=24% Similarity=0.363 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEE
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC 58 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~ 58 (794)
.+++..||..... +....+++.++|++|+||||.++.+++ +. .|+.+-|.+
T Consensus 28 v~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~--el--g~~v~Ew~n 78 (519)
T PF03215_consen 28 VEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAK--EL--GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHH--Hh--CCeeEEecC
Confidence 4677778775432 334567999999999999999999987 32 456666764
No 300
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.072 Score=59.81 Aligned_cols=172 Identities=15% Similarity=0.100 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCCCc---cCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcC
Q 045633 2 EKNTLKSKLLCESN---EQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG 78 (794)
Q Consensus 2 e~~~i~~~l~~~~~---~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 78 (794)
|..++++.|-.+.. -+..-++=|.++|++|.|||-||++++. +. .|-|++++.. +..+.+.+
T Consensus 322 El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAG--EA-----gVPF~svSGS--------EFvE~~~g 386 (774)
T KOG0731|consen 322 ELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAG--EA-----GVPFFSVSGS--------EFVEMFVG 386 (774)
T ss_pred HHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhc--cc-----CCceeeechH--------HHHHHhcc
Confidence 55666666654321 0344566788999999999999999998 22 2456666542 22333322
Q ss_pred CCCCCCCHHHHHHHHHh-HcCCceEEEEEeCCCCCC---------------ccChhhhHhhccCCCCCc-EE-EEEccch
Q 045633 79 SLPNLGELNSLLEYIHT-SIKGKKFFLILDDVWTDD---------------HSKWEPFHNCLMNGLCGS-RI-LVTTRKE 140 (794)
Q Consensus 79 ~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~---------------~~~~~~l~~~l~~~~~gs-~i-ivTtr~~ 140 (794)
.. ...++.+.. .-...+.+|.+|+++-.. ...+.++...+..+..+. -| |-+|+..
T Consensus 387 ~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 387 VG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRP 460 (774)
T ss_pred cc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCc
Confidence 21 111222222 223457899999874311 011233333333333233 23 3344443
Q ss_pred hhhhc--c---cccceEEccCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCch
Q 045633 141 TVARM--M---ESTDVISIKELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPL 198 (794)
Q Consensus 141 ~v~~~--~---~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 198 (794)
++... + ..+..+.+..-+.....++|..++...... .+..++++ |+...-|.+=
T Consensus 461 d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~g 519 (774)
T KOG0731|consen 461 DILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSG 519 (774)
T ss_pred cccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcH
Confidence 33221 1 236688888889999999999887554433 23456666 8888888773
No 301
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.19 E-value=0.008 Score=53.01 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=32.4
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCC
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS 79 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~ 79 (794)
+|+|-|++|+||||+|+.++++.-. -+|+ .-.+++++++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl-------~~vs------aG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL-------KLVS------AGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC-------ceee------ccHHHHHHHHHcCCC
Confidence 5889999999999999999974211 1222 235788888887765
No 302
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.036 Score=61.75 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=75.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
...+.|-++|++|.|||.||+++++ .....| +.+... .+.....+ .....+........+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~--------~l~sk~vG-----esek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS--------ELLSKWVG-----ESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH--------HHhccccc-----hHHHHHHHHHHHHHc
Confidence 4556788999999999999999998 333333 222211 11111100 111222333334446
Q ss_pred CceEEEEEeCCCCC-----Cc------cChhhhHhhccCC--CCCcEEEEEccchhhhhc---c--cccceEEccCCChH
Q 045633 99 GKKFFLILDDVWTD-----DH------SKWEPFHNCLMNG--LCGSRILVTTRKETVARM---M--ESTDVISIKELSEH 160 (794)
Q Consensus 99 ~~~~LlvlDdv~~~-----~~------~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~---~--~~~~~~~l~~l~~~ 160 (794)
..+..|++|+++.- .. .....+...+... ..+..||-||........ . .-+..+.+..-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78999999999431 10 1223344334322 233344555554432221 1 22568899999999
Q ss_pred hHHHHHHHHhhC
Q 045633 161 ECWSLFKRFAFS 172 (794)
Q Consensus 161 ea~~Lf~~~~~~ 172 (794)
+..++|..+...
T Consensus 414 ~r~~i~~~~~~~ 425 (494)
T COG0464 414 ERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHhcc
Confidence 999999998754
No 303
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.17 E-value=0.001 Score=56.66 Aligned_cols=84 Identities=20% Similarity=0.263 Sum_probs=38.0
Q ss_pred cCCccceEEEcccCCCccccccCcccc-CccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCc
Q 045633 406 QLTCLRALKIEDFGLGDKTIEIPRGLE-NLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLR 480 (794)
Q Consensus 406 ~~~~L~~L~l~~~~~~~~~~~lp~~i~-~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~ 480 (794)
+...|...+|++|. ..++|+.+. ..+.+..|+|++ +..+|.++..+..|+.|+ .+.+...|.-+..|.+|-
T Consensus 51 ~~~el~~i~ls~N~----fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 51 KGYELTKISLSDNG----FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred CCceEEEEecccch----hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHH
Confidence 33344444555544 444444433 223444444444 444444444444444444 333444444444444444
Q ss_pred eeEecccccccCC
Q 045633 481 HLIFDVFGVDYVP 493 (794)
Q Consensus 481 ~L~l~~~~l~~lp 493 (794)
.|+...|.+.++|
T Consensus 127 ~Lds~~na~~eid 139 (177)
T KOG4579|consen 127 MLDSPENARAEID 139 (177)
T ss_pred HhcCCCCccccCc
Confidence 4444444444444
No 304
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.17 E-value=0.015 Score=54.52 Aligned_cols=85 Identities=20% Similarity=0.125 Sum_probs=43.5
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC-CCHHHHHHHHHHHhcCC---CCCCCCHHHHH-HHHHhHc
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGS---LPNLGELNSLL-EYIHTSI 97 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~---~~~~~~~~~~~-~~l~~~l 97 (794)
++.++|++|+||||++..++. .....=..++.++.... ....+.+...+...+.. .....+..+.. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~--~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL--YLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 578999999999999988876 33333223555654432 22233333333333321 11112333333 2333333
Q ss_pred CCceEEEEEeCC
Q 045633 98 KGKKFFLILDDV 109 (794)
Q Consensus 98 ~~~~~LlvlDdv 109 (794)
....-++|+|..
T Consensus 80 ~~~~d~viiDt~ 91 (173)
T cd03115 80 EENFDVVIVDTA 91 (173)
T ss_pred hCCCCEEEEECc
Confidence 334445668876
No 305
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.17 E-value=0.022 Score=63.40 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=42.8
Q ss_pred ceEEEEEeCCCCCCccChhhhHhhccCC----------------------------CCCcEEEEEc-cchh-hhhc-ccc
Q 045633 100 KKFFLILDDVWTDDHSKWEPFHNCLMNG----------------------------LCGSRILVTT-RKET-VARM-MES 148 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~----------------------------~~gs~iivTt-r~~~-v~~~-~~~ 148 (794)
..-.|++|+++.........+...+... ....++|.+| ++.. +... ...
T Consensus 175 ~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR 254 (531)
T TIGR02902 175 HGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSR 254 (531)
T ss_pred CCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhh
Confidence 3457899999776665655555443221 1123666554 4322 1111 122
Q ss_pred cceEEccCCChHhHHHHHHHHhhC
Q 045633 149 TDVISIKELSEHECWSLFKRFAFS 172 (794)
Q Consensus 149 ~~~~~l~~l~~~ea~~Lf~~~~~~ 172 (794)
...+.+++++.+|..+++++.+..
T Consensus 255 ~~~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 255 CVEIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred hheeeCCCCCHHHHHHHHHHHHHH
Confidence 346788899999988888876644
No 306
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.15 E-value=0.0046 Score=54.43 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
--|+|.|++|+||||+++++.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH
Confidence 4578999999999999999997
No 307
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.016 Score=54.12 Aligned_cols=117 Identities=22% Similarity=0.170 Sum_probs=59.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhc--CCCCC------------CCCHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE--GSLPN------------LGELN 87 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~--~~~~~------------~~~~~ 87 (794)
.+++|+|..|.|||||++.++... ....+.++++-....... ..+...+. .+... ...-+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 589999999999999999998731 223444554321110000 11111111 11100 01111
Q ss_pred HHHHHHHhHcCCceEEEEEeCCCCC-CccChhhhHhhccCC-CCCcEEEEEccchhhhh
Q 045633 88 SLLEYIHTSIKGKKFFLILDDVWTD-DHSKWEPFHNCLMNG-LCGSRILVTTRKETVAR 144 (794)
Q Consensus 88 ~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 144 (794)
...-.+.+.+..++-++++|+--.. +......+...+... ..|..||++|.+.....
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 2233455666778889999987321 222223333333321 12567888888876544
No 308
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.11 E-value=0.013 Score=62.64 Aligned_cols=66 Identities=14% Similarity=0.289 Sum_probs=39.1
Q ss_pred EEEEeCCCCCCccChhhhHhhccCCC--C-------CcEEEEEccchhhhh-------ccc-ccceEEccCCChHhH-HH
Q 045633 103 FLILDDVWTDDHSKWEPFHNCLMNGL--C-------GSRILVTTRKETVAR-------MME-STDVISIKELSEHEC-WS 164 (794)
Q Consensus 103 LlvlDdv~~~~~~~~~~l~~~l~~~~--~-------gs~iivTtr~~~v~~-------~~~-~~~~~~l~~l~~~ea-~~ 164 (794)
++++|+++.........+...+.... . ..++||++.+. +.. .+. -...+.+++++.++. .+
T Consensus 110 lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~-LPE~g~~leAL~DRFliri~vp~l~~~~~e~~ 188 (498)
T PRK13531 110 IVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE-LPEADSSLEALYDRMLIRLWLDKVQDKANFRS 188 (498)
T ss_pred EEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC-CcccCCchHHhHhhEEEEEECCCCCchHHHHH
Confidence 89999998776666666666653221 1 22566655543 221 111 133678899986444 77
Q ss_pred HHHHH
Q 045633 165 LFKRF 169 (794)
Q Consensus 165 Lf~~~ 169 (794)
++...
T Consensus 189 lL~~~ 193 (498)
T PRK13531 189 MLTSQ 193 (498)
T ss_pred HHHcc
Confidence 77653
No 309
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.10 E-value=0.01 Score=54.51 Aligned_cols=92 Identities=22% Similarity=0.251 Sum_probs=66.4
Q ss_pred hhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCC--CCCcCCCCCCCCCcceeeecccccceEeCcccc
Q 045633 596 CEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCP--RCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFL 673 (794)
Q Consensus 596 ~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~--~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~ 673 (794)
.+.+..++.|..|.+.+|.+..+- |..-.-+++|..|.|.+|+ .+.++..+..+|+|++|.+-+.+-...-.-..+
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~--p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y 134 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRID--PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY 134 (233)
T ss_pred cccCCCccccceEEecCCcceeec--cchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeE
Confidence 457778899999999999988773 5555568899999999985 345677788899999999987442211111111
Q ss_pred cCcccCCCccccccCCCccccCCccceeecccc
Q 045633 674 GIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIM 706 (794)
Q Consensus 674 ~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 706 (794)
-+-.+|+|+.|++.+.
T Consensus 135 -----------------vl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 135 -----------------VLYKLPSLRTLDFQKV 150 (233)
T ss_pred -----------------EEEecCcceEeehhhh
Confidence 1457899999998764
No 310
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.02 Score=53.91 Aligned_cols=120 Identities=17% Similarity=0.030 Sum_probs=58.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhc--CCCCC---CCC-----------
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLE--GSLPN---LGE----------- 85 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~--~~~~~---~~~----------- 85 (794)
.+++|.|..|.|||||++.++.. .....+.+.++-........-.....+.+. .+.+. ...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~ 103 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL---EEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCH
Confidence 58999999999999999999863 222344454422111110000011111111 01000 001
Q ss_pred HHHHHHHHHhHcCCceEEEEEeCCCC-CCccChhhhHhhccCC--CCCcEEEEEccchhhhh
Q 045633 86 LNSLLEYIHTSIKGKKFFLILDDVWT-DDHSKWEPFHNCLMNG--LCGSRILVTTRKETVAR 144 (794)
Q Consensus 86 ~~~~~~~l~~~l~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~ 144 (794)
-+...-.+.+.+..++-++++|+--. -|....+.+...+... ..|..||++|.+.....
T Consensus 104 G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 12223334556667788999998632 1222233333333321 12466888888765544
No 311
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.08 E-value=0.056 Score=53.85 Aligned_cols=148 Identities=18% Similarity=0.202 Sum_probs=75.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccC-CeEEEEEecCCCCH-HHHHHHHHHHhc----CCCCCCCCHHHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDPFDE-FRIAKAIIEGLE----GSLPNLGELNSLLEYI 93 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~v~~~~~~~~-~~~~~~i~~~l~----~~~~~~~~~~~~~~~l 93 (794)
+...|.|+|+.|.|||+|...+..+ ...| +..+-|.+...... .-.++.|.+++. .......+..+....+
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~l 124 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKL 124 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHH
Confidence 3446779999999999999777663 2233 33444555443322 223444444443 2222223333444444
Q ss_pred HhHcC------CceEEEEEeCCCCCCc----cChhhhHhhcc-CCCCCcEEEEEccchh-------hhhcccccceEEcc
Q 045633 94 HTSIK------GKKFFLILDDVWTDDH----SKWEPFHNCLM-NGLCGSRILVTTRKET-------VARMMESTDVISIK 155 (794)
Q Consensus 94 ~~~l~------~~~~LlvlDdv~~~~~----~~~~~l~~~l~-~~~~gs~iivTtr~~~-------v~~~~~~~~~~~l~ 155 (794)
...|+ +.+++.|+|.++-... .-+..+.+--. ...|-|-|-+|||-.. |.....-..++-++
T Consensus 125 L~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~ 204 (408)
T KOG2228|consen 125 LEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLP 204 (408)
T ss_pred HHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccC
Confidence 44442 3468889988843211 11122222111 1345566778999532 22222222244455
Q ss_pred CCChHhHHHHHHHHh
Q 045633 156 ELSEHECWSLFKRFA 170 (794)
Q Consensus 156 ~l~~~ea~~Lf~~~~ 170 (794)
.+.-.+.+.+++...
T Consensus 205 ~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 205 SLPLGDYVDLYRKLL 219 (408)
T ss_pred CCChHHHHHHHHHHh
Confidence 566666666665543
No 312
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.08 E-value=0.021 Score=56.90 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=37.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccc----cCCeEEEEEecCCCCHHHHHHHHHHHh
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGL 76 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l 76 (794)
-.++=|+|.+|+|||+||..++-...+.. .=..++||+-...+....+. +|++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 35888999999999999976653222221 12469999988888877664 456654
No 313
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.08 E-value=0.023 Score=52.44 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.|.|+|..|+||+.+|+.+.+
T Consensus 24 pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 24 PVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp -EEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHH
Confidence 366999999999999999987
No 314
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.08 E-value=0.016 Score=57.03 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....+|+|.|+.|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999998887
No 315
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.011 Score=55.83 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+.+|||.|.+|+||||+|+.++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 316
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.04 E-value=0.022 Score=55.38 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|||.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999998887
No 317
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.02 E-value=0.0078 Score=54.07 Aligned_cols=37 Identities=30% Similarity=0.202 Sum_probs=28.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEe
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV 59 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~ 59 (794)
..+|-|+|.+|+||||||+++.+ +....-..+++++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLDG 38 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEecC
Confidence 35899999999999999999998 55555556777753
No 318
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.92 E-value=0.0037 Score=57.87 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=31.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCcccc-ccCCeEEEEEecCCCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVI-ENFDKRIWVCVSDPFD 64 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~~v~~~~~~~ 64 (794)
..++.+.|+.|+|||.+|+.+++ .+. +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 46788999999999999999987 444 4445666677665433
No 319
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.028 Score=51.66 Aligned_cols=118 Identities=18% Similarity=0.149 Sum_probs=61.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
.+++|+|..|.|||||++.+... . ....+.++++-...... ........+.-... ...-+...-.+.+.+....
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q-lS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKL--PLEELRRRIGYVPQ-LSGGQRQRVALARALLLNP 99 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccC--CHHHHHhceEEEee-CCHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999873 2 23445555543211110 00111111111000 1122233334555566667
Q ss_pred EEEEEeCCCCC-CccChhhhHhhccCC-CCCcEEEEEccchhhhhc
Q 045633 102 FFLILDDVWTD-DHSKWEPFHNCLMNG-LCGSRILVTTRKETVARM 145 (794)
Q Consensus 102 ~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 145 (794)
-++++|+.... +......+...+... ..+..+|++|.+......
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 89999987431 222233333333321 124568888887665543
No 320
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.90 E-value=0.0053 Score=54.19 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=18.8
Q ss_pred EEEEecCCCcHHHHHHHHhC
Q 045633 24 ISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~ 43 (794)
|+|.|+.|+||||+|+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 321
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.89 E-value=0.034 Score=56.08 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+-+|||.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999987654
No 322
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.88 E-value=0.063 Score=55.24 Aligned_cols=39 Identities=23% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEe
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV 59 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~ 59 (794)
...++|+++|+.|+||||++..++.. ....=..|..++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~--l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK--YKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCeEEEEec
Confidence 45789999999999999999888873 3322224555554
No 323
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.88 E-value=0.027 Score=52.81 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=48.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccc-cC-CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhH
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIE-NF-DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTS 96 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~-~f-~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 96 (794)
++..-+.|.||+|+||||-+..+++ +.-+ .| +++.-+++|+...+.-+...|-. +..... ..
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr--~LLG~~~ke~vLELNASdeRGIDvVRn~IK~-FAQ~kv-------------~l 109 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLAR--ELLGDSYKEAVLELNASDERGIDVVRNKIKM-FAQKKV-------------TL 109 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHH--HHhChhhhhHhhhccCccccccHHHHHHHHH-HHHhhc-------------cC
Confidence 3667777999999999998887776 3322 23 45555555554444333222211 000000 00
Q ss_pred cCCceEEEEEeCCCCCCccChhhhHh
Q 045633 97 IKGKKFFLILDDVWTDDHSKWEPFHN 122 (794)
Q Consensus 97 l~~~~~LlvlDdv~~~~~~~~~~l~~ 122 (794)
-.++--+||||..++.....-.++..
T Consensus 110 p~grhKIiILDEADSMT~gAQQAlRR 135 (333)
T KOG0991|consen 110 PPGRHKIIILDEADSMTAGAQQALRR 135 (333)
T ss_pred CCCceeEEEeeccchhhhHHHHHHHH
Confidence 12556789999997654433333443
No 324
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.86 E-value=0.016 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.-.+|+|.|++|+||||+|+.++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
No 325
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.83 E-value=0.0069 Score=57.91 Aligned_cols=21 Identities=48% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
||+|.|.+|+||||+|+++..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999887
No 326
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.83 E-value=0.00037 Score=75.36 Aligned_cols=125 Identities=19% Similarity=0.082 Sum_probs=91.3
Q ss_pred ccCcceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccC
Q 045633 354 CQEKLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLEN 433 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~ 433 (794)
.|.++...+..++.......++.-++.+++|++++|. . .... .+..++.|+.|||++|. +..+|.-=..
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-----~-~~v~-~Lr~l~~LkhLDlsyN~----L~~vp~l~~~ 230 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-----F-TKVD-NLRRLPKLKHLDLSYNC----LRHVPQLSMV 230 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-----h-hhhH-HHHhcccccccccccch----hccccccchh
Confidence 4566777777777776677777888999999999982 2 2233 47789999999999999 7777752222
Q ss_pred ccCCcEEeccC--CCccCccccCCCccceec--CcCC---CccCcccccccCCceeEeccccccc
Q 045633 434 LIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSL---KRLPQGIGKLINLRHLIFDVFGVDY 491 (794)
Q Consensus 434 l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l---~~lp~~~~~L~~L~~L~l~~~~l~~ 491 (794)
-.+|+.|.+++ +++| ..+.+|++|+.|| .+-+ .+|- -++.|..|+.|++.+|.+..
T Consensus 231 gc~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 231 GCKLQLLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhheeeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCcccc
Confidence 23499999998 7777 5788999999999 2222 2331 26778889999998776643
No 327
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.76 E-value=0.042 Score=57.75 Aligned_cols=82 Identities=26% Similarity=0.252 Sum_probs=47.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC-----CCCHHHHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN-----LGELNSLLEYIH 94 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 94 (794)
.-.++.|.|.+|+|||||+.+++. .....-..++|++..+. ...+ ..-++.++..... ..+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 346899999999999999988876 33333356888876532 2222 2223344432211 123444444443
Q ss_pred hHcCCceEEEEEeCC
Q 045633 95 TSIKGKKFFLILDDV 109 (794)
Q Consensus 95 ~~l~~~~~LlvlDdv 109 (794)
+ .+.-++|+|.+
T Consensus 156 ~---~~~~lVVIDSI 167 (372)
T cd01121 156 E---LKPDLVIIDSI 167 (372)
T ss_pred h---cCCcEEEEcch
Confidence 2 35567888887
No 328
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.73 E-value=0.036 Score=58.78 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=28.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEec
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS 60 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~ 60 (794)
..+++|.++|+.|+||||+|.+++.. ....-..|..|+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~--l~~~G~kV~lV~~D 137 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY--YQRKGFKPCLVCAD 137 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCCEEEEcCc
Confidence 45789999999999999999877752 32222245555543
No 329
>PRK06547 hypothetical protein; Provisional
Probab=95.72 E-value=0.013 Score=54.37 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....+|+|.|+.|+||||+|+.+.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999986
No 330
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.70 E-value=0.029 Score=57.54 Aligned_cols=58 Identities=22% Similarity=0.204 Sum_probs=39.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCcccc----ccCCeEEEEEecCCCCHHHHHHHHHHHhcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVI----ENFDKRIWVCVSDPFDEFRIAKAIIEGLEG 78 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 78 (794)
.-+++-|+|.+|+|||++|.+++-..... ..=..++||+....++.+.+. ++++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 44688899999999999997655321211 112468999988877777664 45565543
No 331
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.70 E-value=0.0019 Score=55.05 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=43.5
Q ss_pred HHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCc
Q 045633 401 QGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQ 471 (794)
Q Consensus 401 ~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~ 471 (794)
+++-.+++.++.|+|++|. +.++|..+..++.|+.|+++. +...|.-|..|.+|-.|+ .+....+|.
T Consensus 70 ~kft~kf~t~t~lNl~~ne----isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 70 KKFTIKFPTATTLNLANNE----ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred HHHhhccchhhhhhcchhh----hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 3334455566777777777 667777777777777777776 666777766677777776 333444544
No 332
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.69 E-value=0.029 Score=51.67 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCcccccc
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIEN 50 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~ 50 (794)
+.|.+.|.+|+||||+|+++++ ..+..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak--~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK--ELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH--HHHHh
Confidence 3577899999999999999987 44444
No 333
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.67 E-value=0.075 Score=52.73 Aligned_cols=142 Identities=17% Similarity=0.200 Sum_probs=69.5
Q ss_pred EEEEEecCCCcHHHHHHHHhCCcccc----------ccCCeEEEEEecCCC-CHHHHHHHHHHHhcCCCC---------C
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVI----------ENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGSLP---------N 82 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~----------~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~---------~ 82 (794)
+..|+|++|+|||+||..++...... ..=..|++++..... .+..-+..+...++.... .
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 45689999999999997776421100 011246677665433 233334444443321100 0
Q ss_pred -------C---CCHHHHHHHHHhHc-CCceEEEEEeCCCC------CCccChhhhHhhccC--CCCCcEEEEEccchhhh
Q 045633 83 -------L---GELNSLLEYIHTSI-KGKKFFLILDDVWT------DDHSKWEPFHNCLMN--GLCGSRILVTTRKETVA 143 (794)
Q Consensus 83 -------~---~~~~~~~~~l~~~l-~~~~~LlvlDdv~~------~~~~~~~~l~~~l~~--~~~gs~iivTtr~~~v~ 143 (794)
. .......+.+.+.. ..+.-+||+|-+-. .+......+...+.. ...|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 00112233333332 34677999996521 122233333333322 12367788777754211
Q ss_pred h--------cc-------cccceEEccCCChHhHHH
Q 045633 144 R--------MM-------ESTDVISIKELSEHECWS 164 (794)
Q Consensus 144 ~--------~~-------~~~~~~~l~~l~~~ea~~ 164 (794)
. .. .....+.+.+++++|+.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 1 00 113467777788887766
No 334
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.66 E-value=0.0076 Score=46.18 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|+|.|..|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998887
No 335
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.66 E-value=0.065 Score=49.96 Aligned_cols=108 Identities=15% Similarity=0.036 Sum_probs=54.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
.+++|.|+.|+|||||++.+..-. ....+.+++.-.. +. ...+......-+...-.+.+.+..++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~---i~---------~~~q~~~LSgGq~qrv~laral~~~p 90 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGIT---PV---------YKPQYIDLSGGELQRVAIAAALLRNA 90 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEE---EE---------EEcccCCCCHHHHHHHHHHHHHhcCC
Confidence 489999999999999999988732 2223333332100 00 00000001112223334455566677
Q ss_pred EEEEEeCCCC-CCccChhhhHhhccCC--CCCcEEEEEccchhhhh
Q 045633 102 FFLILDDVWT-DDHSKWEPFHNCLMNG--LCGSRILVTTRKETVAR 144 (794)
Q Consensus 102 ~LlvlDdv~~-~~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~ 144 (794)
-++++|+--. -+......+...+... ..+..||++|.+.....
T Consensus 91 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 91 TFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 8999998632 1222222233333221 11245778887765444
No 336
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.65 E-value=0.0038 Score=59.78 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=49.8
Q ss_pred hCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCC--CCcCCCCCCCCCcceeeecccccce
Q 045633 598 ALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPR--CEIMPPLGKLPSLEILRIAEMVSVK 666 (794)
Q Consensus 598 ~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~--l~~l~~l~~L~~L~~L~l~~~~~l~ 666 (794)
.+..+++|+.|.++.|........+.....+++|++|++++|+. ++.++.+..+++|..|++.+|....
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 44567899999999883222211133455679999999999942 4667778889999999999987554
No 337
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.64 E-value=0.0092 Score=57.88 Aligned_cols=24 Identities=42% Similarity=0.562 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+..+|+|.|.+|+||||||+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999999987
No 338
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.16 Score=56.40 Aligned_cols=71 Identities=20% Similarity=0.255 Sum_probs=44.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
..=|.+||++|.|||-+|++|+. +.. .-|+++..+ ++++.--++ ..+.+.+...+.-..+
T Consensus 705 RSGILLYGPPGTGKTLlAKAVAT--Ecs-----L~FlSVKGP--------ELLNMYVGq-----SE~NVR~VFerAR~A~ 764 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVAT--ECS-----LNFLSVKGP--------ELLNMYVGQ-----SEENVREVFERARSAA 764 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHh--hce-----eeEEeecCH--------HHHHHHhcc-----hHHHHHHHHHHhhccC
Confidence 33466999999999999999997 322 335566442 222222221 2233344444444568
Q ss_pred eEEEEEeCCCC
Q 045633 101 KFFLILDDVWT 111 (794)
Q Consensus 101 ~~LlvlDdv~~ 111 (794)
++.|+||.+++
T Consensus 765 PCVIFFDELDS 775 (953)
T KOG0736|consen 765 PCVIFFDELDS 775 (953)
T ss_pred CeEEEeccccc
Confidence 99999999965
No 339
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.57 E-value=0.16 Score=49.14 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|.|..|.|||||++.++.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999876
No 340
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.014 Score=55.53 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=24.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF 51 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f 51 (794)
..++=|.++|++|.|||-+|++|++ +....|
T Consensus 209 dppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 3566788999999999999999999 444333
No 341
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.54 E-value=0.054 Score=53.61 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=33.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHH
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKA 71 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 71 (794)
..-.++.|.|.+|+|||++|.++.. .....-+.++||+..+ +..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~--~~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEEeeC--CHHHHHHH
Confidence 3557899999999999999977654 2223345788998764 44444444
No 342
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.53 E-value=0.024 Score=51.32 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 343
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.53 E-value=0.0064 Score=61.06 Aligned_cols=82 Identities=26% Similarity=0.234 Sum_probs=40.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCC-eEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
+-|.++|+.|+|||++++...+. ... .. .+.-++.+...+...++ .+++.-...... ....--.+|
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~--l~~-~~~~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~---------~~~gP~~~k 100 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSS--LDS-DKYLVITINFSAQTTSNQLQ-KIIESKLEKRRG---------RVYGPPGGK 100 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC--STT-CCEEEEEEES-TTHHHHHHH-HCCCTTECECTT---------EEEEEESSS
T ss_pred CcEEEECCCCCchhHHHHhhhcc--CCc-cccceeEeeccCCCCHHHHH-HHHhhcEEcCCC---------CCCCCCCCc
Confidence 34679999999999999888762 221 12 23345555433333332 222111100000 000011468
Q ss_pred eEEEEEeCCCCCCccC
Q 045633 101 KFFLILDDVWTDDHSK 116 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~ 116 (794)
+.++++||+--...+.
T Consensus 101 ~lv~fiDDlN~p~~d~ 116 (272)
T PF12775_consen 101 KLVLFIDDLNMPQPDK 116 (272)
T ss_dssp EEEEEEETTT-S---T
T ss_pred EEEEEecccCCCCCCC
Confidence 9999999995443333
No 344
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.51 E-value=0.069 Score=61.01 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=69.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
+-|.|+|++|.|||++|+.++. +....| +.++.+. .. ....+ .........+.......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~--~~~~~f---~~is~~~------~~----~~~~g-----~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSD------FV----EMFVG-----VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HcCCCE---EEEehHH------hH----Hhhhc-----ccHHHHHHHHHHHHhcCC
Confidence 3488999999999999999987 333222 2222221 10 10100 011122222333334567
Q ss_pred EEEEEeCCCCCCc----------cCh----hhhHhhccCC--CCCcEEEEEccchhhhhc--c---cccceEEccCCChH
Q 045633 102 FFLILDDVWTDDH----------SKW----EPFHNCLMNG--LCGSRILVTTRKETVARM--M---ESTDVISIKELSEH 160 (794)
Q Consensus 102 ~LlvlDdv~~~~~----------~~~----~~l~~~l~~~--~~gs~iivTtr~~~v~~~--~---~~~~~~~l~~l~~~ 160 (794)
.+|++|+++.-.. ... ..+...+... ..+.-||.||...+.... . ..+..+.+...+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 8999999854210 011 1222222222 223445556665543221 1 22567888888888
Q ss_pred hHHHHHHHHhhC
Q 045633 161 ECWSLFKRFAFS 172 (794)
Q Consensus 161 ea~~Lf~~~~~~ 172 (794)
+-.+++..+...
T Consensus 326 ~R~~Il~~~~~~ 337 (644)
T PRK10733 326 GREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHhhc
Confidence 888898887654
No 345
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.50 E-value=0.12 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.+++|.|..|.|||||++.++..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998863
No 346
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.02 Score=53.34 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhCC
Q 045633 23 IISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999884
No 347
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.49 E-value=0.05 Score=56.37 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=38.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccc----cCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGLE 77 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 77 (794)
.-+++-|+|.+|+||||+|.+++....... .=..++||+....+....+. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 457888999999999999987765322210 11368999988877776544 4444443
No 348
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.00058 Score=65.33 Aligned_cols=52 Identities=21% Similarity=0.295 Sum_probs=26.3
Q ss_pred CccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeec
Q 045633 604 NIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIA 660 (794)
Q Consensus 604 ~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~ 660 (794)
+.+.|+.+||....+ ..+..++.|+.|.|+-| ++..+..+..+.+|++|.|.
T Consensus 20 ~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLR 71 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLR 71 (388)
T ss_pred HhhhhcccCCCccHH----HHHHhcccceeEEeecc-ccccchhHHHHHHHHHHHHH
Confidence 445555555554332 22334555555555555 34444445555555555554
No 349
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.47 E-value=0.049 Score=56.40 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=40.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccc----cCCeEEEEEecCCCCHHHHHHHHHHHhcC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGLEG 78 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 78 (794)
..-.++-|+|.+|+|||++|..++-...... .-..++||+....+..+.+ .++++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 3457888999999999999976663211111 1126899999888877665 455665543
No 350
>PRK06762 hypothetical protein; Provisional
Probab=95.45 E-value=0.011 Score=54.99 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999886
No 351
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.084 Score=60.05 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=51.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC-CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
-++|+++|+.|+||||.+.+++...........|..++.... ....+.++...+.++.......+.+++.+.+. .+++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-HhcC
Confidence 479999999999999999888873211221235666665432 22445556666666544433344555444444 3344
Q ss_pred ceEEEEEeCCC
Q 045633 100 KKFFLILDDVW 110 (794)
Q Consensus 100 ~~~LlvlDdv~ 110 (794)
+ -+|++|-.-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 477777663
No 352
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.45 E-value=0.026 Score=54.09 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=58.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCC-------CHHHHHHHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLG-------ELNSLLEYI 93 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~~~~l 93 (794)
-++++|.|+.|.||||+.+.+..-. +..+ ..++|.+.. ... .....|...+........ +..+. ..+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~~-~~l-~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAEY-ATL-PIFNRLLSRLSNDDSMERNLSTFASEMSET-AYI 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchhh-cCc-cChhheeEecCCccccchhhhHHHHHHHHH-HHH
Confidence 4789999999999999998876421 1111 112222211 111 222223222222211101 11111 112
Q ss_pred HhHcCCceEEEEEeCCCCC-CccC----hhhhHhhccCCCCCcEEEEEccchhhhhcc
Q 045633 94 HTSIKGKKFFLILDDVWTD-DHSK----WEPFHNCLMNGLCGSRILVTTRKETVARMM 146 (794)
Q Consensus 94 ~~~l~~~~~LlvlDdv~~~-~~~~----~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 146 (794)
.+ +..++-|+++|+.... +..+ ...+...+... |..+|++|-+..++..+
T Consensus 103 l~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~--~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 103 LD-YADGDSLVLIDELGRGTSSADGFAISLAILECLIKK--ESTVFFATHFRDIAAIL 157 (204)
T ss_pred HH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc--CCEEEEECChHHHHHHh
Confidence 22 2356789999997332 1111 12233333332 77899999998877654
No 353
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.44 E-value=0.014 Score=56.54 Aligned_cols=24 Identities=42% Similarity=0.497 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.-.+|+|+|+.|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999986
No 354
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.44 E-value=0.029 Score=56.16 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=29.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 61 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 61 (794)
.-.++.|.|.+|+|||++|.+++.. ....=..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 4578889999999999999877652 222234688998864
No 355
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.42 E-value=0.0095 Score=55.42 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=21.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
-.+|+|-||-|+||||||+.++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 356
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.41 E-value=0.013 Score=52.90 Aligned_cols=21 Identities=43% Similarity=0.513 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999875
No 357
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.41 E-value=0.0058 Score=52.23 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHhCCccccccCCe
Q 045633 24 ISLVGMGGIGKTTLAQFAYNDKDVIENFDK 53 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~ 53 (794)
|.|+|.+|+||||+|+.++. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 56999999999999999998 56666643
No 358
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.41 E-value=0.12 Score=48.40 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=25.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEE
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVC 58 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~ 58 (794)
.+|+|+|+.|.|||||.+.+.. ....=++.+||+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~ 62 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVD 62 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEEC
Confidence 5899999999999999998875 222224455554
No 359
>PTZ00301 uridine kinase; Provisional
Probab=95.40 E-value=0.012 Score=56.53 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|||.|.+|+||||+|+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999988876
No 360
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.39 E-value=0.28 Score=43.85 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+.|.|+.|.|||||.+.++.
T Consensus 31 ~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHh
Confidence 578999999999999999997
No 361
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.39 E-value=0.37 Score=48.43 Aligned_cols=60 Identities=13% Similarity=0.048 Sum_probs=39.8
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhhc-ccccceEEccCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVARM-MESTDVISIKEL 157 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~-~~~~~~~~l~~l 157 (794)
.+++-++|+|+++.........+...+..-.+++.+|++|.+. .+... ......+.+.++
T Consensus 93 e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 3566788999998877778888888887766677766666653 33322 233455666654
No 362
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.39 E-value=0.019 Score=55.60 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..++++.+.... ++..+|||+|++|+|||||..++..
T Consensus 15 ~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 15 ARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHH
Confidence 345666665432 4678999999999999999987776
No 363
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.38 E-value=0.004 Score=59.62 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=68.0
Q ss_pred CCccEEEEeecCCCccCCCCchhccccCccEEeecCC--CCCCcCCC-CCCCCCcceeeecccccceEeCcccccCcccC
Q 045633 603 PNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFC--PRCEIMPP-LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRD 679 (794)
Q Consensus 603 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~--~~l~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~ 679 (794)
..|+.|++.++...++. .+..+++|++|.++.| +....++. ...+|+|++|+++++ .++.+ .....
T Consensus 43 ~~le~ls~~n~gltt~~----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~l-stl~p----- 111 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLT----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDL-STLRP----- 111 (260)
T ss_pred cchhhhhhhccceeecc----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccc-cccch-----
Confidence 45666666666655542 3446789999999988 44445555 445699999999873 33332 11111
Q ss_pred CCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCcc
Q 045633 680 HNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEK 735 (794)
Q Consensus 680 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 735 (794)
...+++|..|++.+|+-...-......+.-+|+|++|+-.++..
T Consensus 112 ------------l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 112 ------------LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred ------------hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 45778888888888754442222222245678888888777643
No 364
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.36 E-value=0.07 Score=55.38 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=38.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccc----cCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGLE 77 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 77 (794)
.-.++-|+|++|+|||++|.+++....... .=..++||+....++...+. ++++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 457888999999999999987765321111 11478999998877766554 3444443
No 365
>PRK05439 pantothenate kinase; Provisional
Probab=95.33 E-value=0.082 Score=53.72 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.2
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 18 QNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 18 ~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...+-+|||.|..|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999988876
No 366
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.30 E-value=0.057 Score=55.87 Aligned_cols=59 Identities=22% Similarity=0.143 Sum_probs=40.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCcccc----ccCCeEEEEEecCCCCHHHHHHHHHHHhcC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVI----ENFDKRIWVCVSDPFDEFRIAKAIIEGLEG 78 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~ 78 (794)
..-+++-|+|.+|+|||+|+..++-..... ..-..++||+....+..+.+.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 344677799999999999997765321221 1124689999988888776544 5565543
No 367
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.28 E-value=0.3 Score=54.97 Aligned_cols=107 Identities=15% Similarity=0.098 Sum_probs=53.5
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC-CCC-HHHHHHHHHhHcCCc
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN-LGE-LNSLLEYIHTSIKGK 100 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~-~~~-~~~~~~~l~~~l~~~ 100 (794)
.|.|+|..|+|||++|+.+.+... ..-...+.|++..... ..+. ..+.+.... ... .......+. ...
T Consensus 221 pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~--~~~~---~~lfg~~~~~~~~~~~~~~g~~~---~a~ 290 (534)
T TIGR01817 221 TVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE--TLLE---SELFGHEKGAFTGAIAQRKGRFE---LAD 290 (534)
T ss_pred CEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH--HHHH---HHHcCCCCCccCCCCcCCCCccc---ccC
Confidence 467999999999999999987321 1112334555554322 2221 112111100 000 000000000 123
Q ss_pred eEEEEEeCCCCCCccChhhhHhhccCCC-----------CCcEEEEEccc
Q 045633 101 KFFLILDDVWTDDHSKWEPFHNCLMNGL-----------CGSRILVTTRK 139 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 139 (794)
.-.|+||+++.........+...+.... ...|||.||..
T Consensus 291 ~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 291 GGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred CCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 3458899997655555556666554321 12588887754
No 368
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.26 E-value=0.079 Score=57.45 Aligned_cols=126 Identities=21% Similarity=0.234 Sum_probs=70.9
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHH-HHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTT-LAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP 81 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTt-La~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 81 (794)
|+++++.+.++ +||.|+|-.|.|||| ||+.+|.+-.. -++.+=++-.+...+..+.+.++++++....
T Consensus 361 R~~ll~~ir~n--------~vvvivgETGSGKTTQl~QyL~edGY~---~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG 429 (1042)
T KOG0924|consen 361 RDQLLSVIREN--------QVVVIVGETGSGKTTQLAQYLYEDGYA---DNGMIGCTQPRRVAAISVAKRVAEEMGVTLG 429 (1042)
T ss_pred HHHHHHHHhhC--------cEEEEEecCCCCchhhhHHHHHhcccc---cCCeeeecCchHHHHHHHHHHHHHHhCCccc
Confidence 56777777655 689999999999987 55777763211 1233323333334455678888888854421
Q ss_pred CC--------------------CCHHHHHHHHHhHcCCceEEEEEeCCCCCCccChhhhHh---hccCCCCCcEEEEEcc
Q 045633 82 NL--------------------GELNSLLEYIHTSIKGKKFFLILDDVWTDDHSKWEPFHN---CLMNGLCGSRILVTTR 138 (794)
Q Consensus 82 ~~--------------------~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~---~l~~~~~gs~iivTtr 138 (794)
.. .+---+.+.+.+..-.|=-.||+|.+.+.. ...+-+.+ ........-|+||||-
T Consensus 430 ~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKliVtSA 508 (1042)
T KOG0924|consen 430 DTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLIVTSA 508 (1042)
T ss_pred cccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEEEeec
Confidence 10 111112233333333456789999985432 22222222 2223344679999987
Q ss_pred ch
Q 045633 139 KE 140 (794)
Q Consensus 139 ~~ 140 (794)
.-
T Consensus 509 Tm 510 (1042)
T KOG0924|consen 509 TM 510 (1042)
T ss_pred cc
Confidence 53
No 369
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.26 E-value=0.11 Score=47.59 Aligned_cols=119 Identities=14% Similarity=-0.013 Sum_probs=62.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC---CCCHHHHHHHHHHH---hcCC-CCCCCC-------
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD---PFDEFRIAKAIIEG---LEGS-LPNLGE------- 85 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~---~~~~~~~~~~i~~~---l~~~-~~~~~~------- 85 (794)
+.+.|-|++..|.||||.|..++- +...+=-.|+.+..-+ ...-...++.+.-. .+.. .....+
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 346888999999999999966655 2322222343333322 22222333332000 0110 000011
Q ss_pred HHHHHHHHHhHcC-CceEEEEEeCCCC---CCccChhhhHhhccCCCCCcEEEEEccch
Q 045633 86 LNSLLEYIHTSIK-GKKFFLILDDVWT---DDHSKWEPFHNCLMNGLCGSRILVTTRKE 140 (794)
Q Consensus 86 ~~~~~~~l~~~l~-~~~~LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 140 (794)
..+..+..++.+. ++-=++|||.+-. -.....+.+...+....++..||+|.|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1223333444443 4567999999821 12234456666676666778999999975
No 370
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.26 E-value=0.21 Score=49.33 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=68.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
+.+.++|+.|+|||+-++.+++. ...++.+..+..++...+...+......... ....+....+...+++..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~--~~~~d~~~~~~~~l~~~~ 166 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGATD--GTINDLTERLMIRLRDTV 166 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHccCc
Confidence 37889999999999999999872 2234445667777777777776666554422 334455666666778889
Q ss_pred EEEEEeCCCCCCccChhhhHhhccCC
Q 045633 102 FFLILDDVWTDDHSKWEPFHNCLMNG 127 (794)
Q Consensus 102 ~LlvlDdv~~~~~~~~~~l~~~l~~~ 127 (794)
-+|+.|+.+......++.+..-....
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d~~ 192 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHDKT 192 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHHhh
Confidence 99999998766666677766544443
No 371
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.25 E-value=0.058 Score=55.57 Aligned_cols=58 Identities=21% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccc----cCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGLE 77 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 77 (794)
..-.++.|+|.+|+||||+|..++....... .-..++||+....+.... +.++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 3567899999999999999987764211111 113579999877666665 344455443
No 372
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.25 E-value=0.1 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
=.+++|.|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999987
No 373
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.24 E-value=0.11 Score=49.85 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.+++|+|..|.|||||++.++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998874
No 374
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.24 E-value=0.016 Score=56.37 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=18.7
Q ss_pred EEEEecCCCcHHHHHHHHhC
Q 045633 24 ISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~ 43 (794)
|.|.|++|+||||+|+.+++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77999999999999999886
No 375
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.23 E-value=0.046 Score=61.38 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=61.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccC---CeEEEEEecCCCCHHHHHHHHHHHhcCCCC--C-CCCHHHHHHHHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENF---DKRIWVCVSDPFDEFRIAKAIIEGLEGSLP--N-LGELNSLLEYIH 94 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f---~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~--~-~~~~~~~~~~l~ 94 (794)
-++..|.|.+|.||||+++++.. .+.... ...+.+......-...+.+.+...+..-.. . ...+......+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~--~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiH 244 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLA--ALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLH 244 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH--HHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHH
Confidence 35788999999999999988776 222211 235555555444444444444332211100 0 000000122223
Q ss_pred hHcC------------Cce---EEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh
Q 045633 95 TSIK------------GKK---FFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET 141 (794)
Q Consensus 95 ~~l~------------~~~---~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 141 (794)
+.|. +.+ -++|+|++...+...+..+...++. ++|+|+---...
T Consensus 245 rlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~---~~rlIlvGD~~Q 303 (615)
T PRK10875 245 RLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALPP---HARVIFLGDRDQ 303 (615)
T ss_pred HHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhccc---CCEEEEecchhh
Confidence 3321 111 3899999865555556666666654 688887665443
No 376
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.21 E-value=0.079 Score=51.03 Aligned_cols=27 Identities=41% Similarity=0.452 Sum_probs=23.3
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHhCC
Q 045633 18 QNAVQIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 18 ~~~~~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.+.+.+|.++||+|.||||..++++.+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHH
Confidence 456778889999999999999998875
No 377
>PRK03839 putative kinase; Provisional
Probab=95.21 E-value=0.012 Score=55.45 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.|.|.|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 378
>PRK05973 replicative DNA helicase; Provisional
Probab=95.20 E-value=0.08 Score=51.58 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=29.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP 62 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 62 (794)
.-.++.|.|.+|+|||++|.+++.. ...+-..++|++....
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC
Confidence 3458889999999999999877652 2223346788877653
No 379
>PRK04040 adenylate kinase; Provisional
Probab=95.20 E-value=0.015 Score=54.92 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|+|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 380
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.20 E-value=0.026 Score=54.61 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48889999999999999988763
No 381
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.19 E-value=0.037 Score=55.34 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.|.+.|++|+||||+|+++..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 382
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.11 Score=49.55 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|..|.|||||++.++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 383
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.17 E-value=0.016 Score=55.14 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+..+|+|.|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999886
No 384
>PRK00625 shikimate kinase; Provisional
Probab=95.13 E-value=0.014 Score=54.24 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHhC
Q 045633 24 ISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~ 43 (794)
|.|+|+.|+||||+|+.+.+
T Consensus 3 I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 385
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.12 E-value=0.012 Score=49.80 Aligned_cols=20 Identities=45% Similarity=0.514 Sum_probs=18.2
Q ss_pred EEEEecCCCcHHHHHHHHhC
Q 045633 24 ISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~ 43 (794)
|-|+|.+|+|||++|+.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999887
No 386
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.12 E-value=0.0021 Score=71.74 Aligned_cols=44 Identities=11% Similarity=0.232 Sum_probs=29.1
Q ss_pred CCcccEEeeccCccCcCCCcC-cc-CCCCccEEEeccCcccccccc
Q 045633 722 MPQIKSLMIFSCEKLKSLPDQ-LL-RSTTLESLEIGEAPIVEQNFK 765 (794)
Q Consensus 722 l~~L~~L~l~~c~~l~~ip~~-~~-~l~~L~~L~l~~~~~l~~~~~ 765 (794)
...|+.|.+..|...+.---. .. ....+..+++.+|+.+.....
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 334899999999655442211 11 166788899999988776653
No 387
>PRK06217 hypothetical protein; Validated
Probab=95.12 E-value=0.031 Score=52.80 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhCC
Q 045633 23 IISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 388
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.12 E-value=0.1 Score=55.54 Aligned_cols=86 Identities=16% Similarity=0.117 Sum_probs=47.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCC------CCCCCCHH-----HH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS------LPNLGELN-----SL 89 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~------~~~~~~~~-----~~ 89 (794)
=+.++|+|..|+|||||++.+.... ....+++++.-.+..++.+.....+...... ..+..... ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 3578999999999999999888632 2222444443323445554444333332111 11111111 11
Q ss_pred HHHHHhHc--CCceEEEEEeCC
Q 045633 90 LEYIHTSI--KGKKFFLILDDV 109 (794)
Q Consensus 90 ~~~l~~~l--~~~~~LlvlDdv 109 (794)
.-.+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22233444 588999999998
No 389
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.11 E-value=0.092 Score=55.80 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=47.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
.-++|+++|+.|+||||++..++.........+.+.++.... .....+-+...++.++.......+..+....+. .++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 457999999999999999987775211122223445554433 223334444555555544333333334333332 334
Q ss_pred CceEEEEEeCC
Q 045633 99 GKKFFLILDDV 109 (794)
Q Consensus 99 ~~~~LlvlDdv 109 (794)
+ .-++++|-.
T Consensus 269 ~-~d~VLIDTa 278 (420)
T PRK14721 269 G-KHMVLIDTV 278 (420)
T ss_pred C-CCEEEecCC
Confidence 3 345667765
No 390
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.08 E-value=0.093 Score=60.92 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=56.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
.-|.|+|..|+|||++|+.+.+.. ...-...+.+++..... ..+...+.....+..... . ......+. ...+
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~s--~r~~~~~v~i~c~~~~~-~~~~~~lfg~~~~~~~g~-~-~~~~g~le---~a~~ 471 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNLS--GRNNRRMVKMNCAAMPA-GLLESDLFGHERGAFTGA-S-AQRIGRFE---LADK 471 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhc--CCCCCCeEEEecccCCh-hHhhhhhcCccccccccc-c-cchhhHHH---hcCC
Confidence 357799999999999999998732 11112445566654321 111122211111111110 0 01111121 1223
Q ss_pred EEEEEeCCCCCCccChhhhHhhccCCC-----------CCcEEEEEccc
Q 045633 102 FFLILDDVWTDDHSKWEPFHNCLMNGL-----------CGSRILVTTRK 139 (794)
Q Consensus 102 ~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 139 (794)
=.|+||+|+.........+...+.... .+.|||.||..
T Consensus 472 GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 472 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred CeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 469999997655554555655553321 24588888864
No 391
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.08 E-value=0.078 Score=52.27 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=29.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 61 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 61 (794)
.-.++.|.|.+|+||||+|.+++.. ....-+.++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 4578999999999999999876642 222335788988744
No 392
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.08 E-value=0.031 Score=57.05 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=34.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKA 71 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 71 (794)
.++|.+.|.||+||||+|.+.+- ........++-|+.....++..++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999977554 33333355777777666666555443
No 393
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.07 E-value=0.088 Score=49.67 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.+++|.|..|.|||||++.++.-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999873
No 394
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.19 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.+++|.|+.|.|||||++.++.-
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999873
No 395
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.05 E-value=0.047 Score=52.46 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=49.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC-CCHHHHHHHHHHHhcCC-------CCCCCCHHH-----
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGS-------LPNLGELNS----- 88 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 88 (794)
+.++|.|.+|+|||+|+..+.+.. .-+.++++-+++. ....++.+++...-... ..+......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 467899999999999999888732 2345688877654 44555555554321000 111111111
Q ss_pred HHHHHHhHc--CCceEEEEEeCC
Q 045633 89 LLEYIHTSI--KGKKFFLILDDV 109 (794)
Q Consensus 89 ~~~~l~~~l--~~~~~LlvlDdv 109 (794)
..-.+.+++ +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 111222232 789999999998
No 396
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.03 E-value=0.0046 Score=69.05 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=22.7
Q ss_pred ccceeeccccccccccccCCCCccCCCcccEEeeccCccCcC
Q 045633 697 KLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKS 738 (794)
Q Consensus 697 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 738 (794)
.|+.|++..|.....-....... ...+++.+++.+|+.+..
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~-~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLAD-SCSNLKDLDLSGCRVITL 442 (482)
T ss_pred ccceEecccCccccccchHHHhh-hhhccccCCccCcccccc
Confidence 37777777765544332211100 156677777777766544
No 397
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.01 E-value=0.021 Score=56.02 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=35.9
Q ss_pred CCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHH
Q 045633 17 QQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIA 69 (794)
Q Consensus 17 ~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 69 (794)
..++..+|||+|.+|+|||||..++....+.+++=-.|+=|+-+.+++--.++
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 34588999999999999999998777643333332345555555555554443
No 398
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.00 E-value=0.079 Score=57.26 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=47.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
-+|++++|+.|+||||.+.+++........-..|..|+... .....+-++..++.++.......+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999988886322222122456666543 22333444555555544322222222222222 23344
Q ss_pred ceEEEEEeCCC
Q 045633 100 KKFFLILDDVW 110 (794)
Q Consensus 100 ~~~LlvlDdv~ 110 (794)
+ -.+++|-..
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 477778763
No 399
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.99 E-value=0.2 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
=.+++|.|+.|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998873
No 400
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.99 E-value=0.042 Score=54.96 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=17.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..|.|.|.+|+||||+|+++..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4688999999999999998887
No 401
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.98 E-value=0.03 Score=53.33 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.++||+|..|+||||||+.++.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 4799999999999999999886
No 402
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.97 E-value=0.05 Score=57.02 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=57.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
-+.|.|.|+.|.||||+++.+.. .+.......++. +.++... ..... ..+..+.....+.......++..++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEY--VHRNK-RSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhh--hccCc-cceEEccccCCCCcCHHHHHHHhhccC
Confidence 36899999999999999998876 344344444443 2222111 00000 000000000111123456677778888
Q ss_pred eEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc
Q 045633 101 KFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK 139 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 139 (794)
+=.|++|++. +.+.+...... ...|..|+.|.-.
T Consensus 196 pd~i~vgEir--d~~~~~~~l~a---a~tGh~v~~T~Ha 229 (343)
T TIGR01420 196 PDVILIGEMR--DLETVELALTA---AETGHLVFGTLHT 229 (343)
T ss_pred CCEEEEeCCC--CHHHHHHHHHH---HHcCCcEEEEEcC
Confidence 9999999993 34444432222 2235555555543
No 403
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.95 E-value=0.16 Score=50.64 Aligned_cols=88 Identities=14% Similarity=0.162 Sum_probs=48.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC-
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK- 98 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 98 (794)
..+++++|..|+||||+++.+.. .....=..+.+++..... .....++..++.++.+.....+.+.+.+.+.. ++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~--~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~-l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW--QFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY-FKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHH-HHh
Confidence 46899999999999999988776 222221346667665332 12222233333333222222333444333332 22
Q ss_pred -CceEEEEEeCCCC
Q 045633 99 -GKKFFLILDDVWT 111 (794)
Q Consensus 99 -~~~~LlvlDdv~~ 111 (794)
.+.-++|+|..-.
T Consensus 152 ~~~~D~ViIDt~Gr 165 (270)
T PRK06731 152 EARVDYILIDTAGK 165 (270)
T ss_pred cCCCCEEEEECCCC
Confidence 3467889998744
No 404
>PRK04328 hypothetical protein; Provisional
Probab=94.95 E-value=0.063 Score=53.47 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=30.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 61 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 61 (794)
.-.++.|.|.+|+|||++|.++... ....-+.++||+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeC
Confidence 4578889999999999999876652 223345688998765
No 405
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.95 E-value=0.025 Score=49.39 Aligned_cols=24 Identities=38% Similarity=0.336 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
-.+|.+.|.-|+||||+++.+++.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 406
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.94 E-value=0.081 Score=54.99 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
-|.|+|..|+||+++|+.+..
T Consensus 24 pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 24 PVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CEEEECCCCChHHHHHHHHHH
Confidence 467999999999999998876
No 407
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.94 E-value=0.11 Score=51.42 Aligned_cols=88 Identities=19% Similarity=0.145 Sum_probs=52.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccc--cccCCeEEEEEecCC-CCHHHHHHHHHHHhcCC-------CCCCCCHH----
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDV--IENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGS-------LPNLGELN---- 87 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~--~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 87 (794)
+.++|.|-.|+|||+|+..+.++... +..-+.++++-+++. ....++..++...=... ..+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 56789999999999999888874321 122467888888764 34555555554431111 01111111
Q ss_pred -HHHHHHHhHc---CCceEEEEEeCC
Q 045633 88 -SLLEYIHTSI---KGKKFFLILDDV 109 (794)
Q Consensus 88 -~~~~~l~~~l---~~~~~LlvlDdv 109 (794)
...-.+.+++ +++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1122334444 378999999998
No 408
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.94 E-value=0.094 Score=54.56 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
-|.|+|..|+||+++|+.+..
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 477999999999999998875
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.93 E-value=0.082 Score=54.79 Aligned_cols=90 Identities=18% Similarity=0.146 Sum_probs=53.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
.-++|.++|+.|+||||-..+++.+......=..|..|+... .....+-++..++-++.+.....+..+....+... +
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 368999999999999864433333111112234577887655 33455666667777776655445555555555433 3
Q ss_pred CceEEEEEeCCCC
Q 045633 99 GKKFFLILDDVWT 111 (794)
Q Consensus 99 ~~~~LlvlDdv~~ 111 (794)
.. =+|.+|-+..
T Consensus 281 ~~-d~ILVDTaGr 292 (407)
T COG1419 281 DC-DVILVDTAGR 292 (407)
T ss_pred cC-CEEEEeCCCC
Confidence 33 5666777643
No 410
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.92 E-value=0.034 Score=58.13 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=56.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccc----cccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDV----IENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIH 94 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~----~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 94 (794)
..++=+.|||..|.|||.|.-.+|+...+ +-||. +...++-+.+..-...... +..+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~----l~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDP----LPQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCcc----HHHHH
Confidence 45778889999999999999999885322 12221 2222332322211111122 33444
Q ss_pred hHcCCceEEEEEeCCCCCCccCh---hhhHhhccCCCCCcEEEEEccchh
Q 045633 95 TSIKGKKFFLILDDVWTDDHSKW---EPFHNCLMNGLCGSRILVTTRKET 141 (794)
Q Consensus 95 ~~l~~~~~LlvlDdv~~~~~~~~---~~l~~~l~~~~~gs~iivTtr~~~ 141 (794)
+.+.++..||.||++.-.+..+. ..+...+. ..|. |||+|.|..
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNRP 168 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCCC
Confidence 55566777999999844333221 22333332 3355 666666654
No 411
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.90 E-value=0.061 Score=54.76 Aligned_cols=82 Identities=22% Similarity=0.205 Sum_probs=49.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHHh
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLGELNSLLEYIHT 95 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 95 (794)
=++|-|+|+.|+||||||..+.. .....-..++||+.....+.. .++.++.... ..+..++....+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 36899999999999999987776 444444568899987765553 2333433211 11334555555555
Q ss_pred HcC-CceEEEEEeCC
Q 045633 96 SIK-GKKFFLILDDV 109 (794)
Q Consensus 96 ~l~-~~~~LlvlDdv 109 (794)
.++ +..-++|+|-|
T Consensus 126 lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHTTSESEEEEE-C
T ss_pred HhhcccccEEEEecC
Confidence 553 44568899988
No 412
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.88 E-value=0.19 Score=50.11 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.+++|+|..|.|||||++.++..
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999873
No 413
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.88 E-value=0.21 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
=.+++|.|+.|.|||||.+.++.
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999887
No 414
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.87 E-value=0.11 Score=49.51 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=26.1
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccC--------CeEEEEEecCC
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENF--------DKRIWVCVSDP 62 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f--------~~~~~v~~~~~ 62 (794)
++.|+|++|+||||++..++.+.-....| ..|+|++....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 78899999999999997776632211111 36888887654
No 415
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.23 Score=48.90 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.+++|.|+.|.|||||.+.++..
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999873
No 416
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.86 E-value=0.018 Score=54.02 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...|.|+|++|+||||+|+.+++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 417
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.86 E-value=0.038 Score=52.20 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=27.7
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHH
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 66 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 66 (794)
.|+|.|-||+||||+|..++.. -...+=..|.=|++...+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEeCCCCCChH
Confidence 5899999999999999774441 122221235566766655543
No 418
>PRK08149 ATP synthase SpaL; Validated
Probab=94.85 E-value=0.11 Score=55.35 Aligned_cols=85 Identities=13% Similarity=0.230 Sum_probs=49.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC-CCCHHHHHHHHHHHhcCC-------CCCCCCHH-----
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGS-------LPNLGELN----- 87 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 87 (794)
=+.++|.|..|+|||||+..++... .-+.+++..+.. ...+.++..+........ ..+.....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 3578999999999999999988732 223444444433 344555555555432211 11111111
Q ss_pred HHHHHHHhHc--CCceEEEEEeCC
Q 045633 88 SLLEYIHTSI--KGKKFFLILDDV 109 (794)
Q Consensus 88 ~~~~~l~~~l--~~~~~LlvlDdv 109 (794)
.....+.+++ +++++|+++|++
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1222333444 689999999998
No 419
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.84 E-value=0.11 Score=55.31 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=46.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCC-------CCCCCCHHH-----H
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-------LPNLGELNS-----L 89 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~-----~ 89 (794)
+.++|.|..|+|||||++.+.... . ....++...-.+...+.++....+..-+.. ..+...... .
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~--~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~ 217 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNT--D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYT 217 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCC--C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHH
Confidence 578999999999999999888732 1 122333322233344445544443322111 111111111 1
Q ss_pred HHHHHhHc--CCceEEEEEeCC
Q 045633 90 LEYIHTSI--KGKKFFLILDDV 109 (794)
Q Consensus 90 ~~~l~~~l--~~~~~LlvlDdv 109 (794)
.-.+.+++ +++.+|+++||+
T Consensus 218 a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 218 ATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22344444 688999999998
No 420
>PRK15453 phosphoribulokinase; Provisional
Probab=94.82 E-value=0.14 Score=50.85 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+..+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998875
No 421
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.81 E-value=0.017 Score=55.55 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|+|.|+.|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 422
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.81 E-value=0.031 Score=66.05 Aligned_cols=140 Identities=19% Similarity=0.174 Sum_probs=72.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCc--cccccCCeEEEEEecCCC-----CHH-HHHHHHHHHhcCCCCCCCCHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDK--DVIENFDKRIWVCVSDPF-----DEF-RIAKAIIEGLEGSLPNLGELNSLLE 91 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~--~~~~~f~~~~~v~~~~~~-----~~~-~~~~~i~~~l~~~~~~~~~~~~~~~ 91 (794)
...-+.|+|.+|.||||....++-.. +....=+..+++.+.... ... .+..-+...+..... ..+...
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~ 296 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIE 296 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhH
Confidence 33467899999999999997665521 111111344455443111 111 222222222222211 111222
Q ss_pred HHHhHcCCceEEEEEeCCCCCCccChhhh---HhhccCCCCCcEEEEEccchhhhhcccccceEEccCCChHhHH
Q 045633 92 YIHTSIKGKKFFLILDDVWTDDHSKWEPF---HNCLMNGLCGSRILVTTRKETVARMMESTDVISIKELSEHECW 163 (794)
Q Consensus 92 ~l~~~l~~~~~LlvlDdv~~~~~~~~~~l---~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~l~~l~~~ea~ 163 (794)
...+.++..++++++|+++......-... ...+.+..+.++||+|+|.............+++..+.++.-.
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 22456778999999999865332222111 1122233457899999997654444333445556655555543
No 423
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.81 E-value=0.034 Score=53.33 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....+|+|+|+.|+||||+|+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999887
No 424
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.80 E-value=0.11 Score=50.99 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=31.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAI 72 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 72 (794)
.-.++.|.|..|+||||+|.+++.. -.... ..++|++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 3458999999999999998666552 11222 4567777433 445555554
No 425
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.78 E-value=0.023 Score=53.35 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|+|.|..|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998887
No 426
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.75 E-value=0.018 Score=53.98 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 427
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.18 Score=48.55 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.+++|+|..|+|||||++.+...
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhccc
Confidence 58999999999999999988873
No 428
>PTZ00035 Rad51 protein; Provisional
Probab=94.71 E-value=0.16 Score=52.75 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=38.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCcccc----ccCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVI----ENFDKRIWVCVSDPFDEFRIAKAIIEGLE 77 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 77 (794)
..-.++.|+|..|+||||++..++-..... ..=..++||+....+..+. +.++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 345788899999999999998776422211 1123577998877666655 344455543
No 429
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.25 Score=48.32 Aligned_cols=145 Identities=19% Similarity=0.195 Sum_probs=72.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc-CC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI-KG 99 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~ 99 (794)
-+-|.++|++|.||+-||++|+. +... -|++++.. ++.....+ +.+.++..+.+.- +.
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVAT--EAnS-----TFFSvSSS--------DLvSKWmG------ESEkLVknLFemARe~ 224 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVAT--EANS-----TFFSVSSS--------DLVSKWMG------ESEKLVKNLFEMAREN 224 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHh--hcCC-----ceEEeehH--------HHHHHHhc------cHHHHHHHHHHHHHhc
Confidence 46788999999999999999997 3322 23344331 11111111 1233333333322 46
Q ss_pred ceEEEEEeCCCCC-------CccChhhhHhhcc-------CCCCCcEEEEEccchhhhhcc---cccceEEccCCChHhH
Q 045633 100 KKFFLILDDVWTD-------DHSKWEPFHNCLM-------NGLCGSRILVTTRKETVARMM---ESTDVISIKELSEHEC 162 (794)
Q Consensus 100 ~~~LlvlDdv~~~-------~~~~~~~l~~~l~-------~~~~gs~iivTtr~~~v~~~~---~~~~~~~l~~l~~~ea 162 (794)
|+.+|++|.++.. +.+....+...+. +...|.-|+-.|..+.+.... .-...+-+ ||.+..|
T Consensus 225 kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~A 303 (439)
T KOG0739|consen 225 KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHA 303 (439)
T ss_pred CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHH
Confidence 8999999998541 1111111222111 122344555566665544321 11222223 3444444
Q ss_pred -HHHHHHHhhCCCCCCChhHHHHHHH
Q 045633 163 -WSLFKRFAFSGRSPTDCEQLEEIGR 187 (794)
Q Consensus 163 -~~Lf~~~~~~~~~~~~~~~~~~~~~ 187 (794)
..+|+-+++......-.++++++++
T Consensus 304 R~~MF~lhlG~tp~~LT~~d~~eL~~ 329 (439)
T KOG0739|consen 304 RARMFKLHLGDTPHVLTEQDFKELAR 329 (439)
T ss_pred hhhhheeccCCCccccchhhHHHHHh
Confidence 4677777655444333355555444
No 430
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.069 Score=54.92 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=51.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC-----CCCHHHHHHHHHhH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN-----LGELNSLLEYIHTS 96 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~ 96 (794)
.+|.|-|-+|||||||..+++. +....- .+.||+-.+... -.+--++.++....+ ..+.+++.+.+.+
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEES~~---QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~- 166 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEESLQ---QIKLRADRLGLPTNNLYLLAETNLEDIIAELEQ- 166 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCcCHH---HHHHHHHHhCCCccceEEehhcCHHHHHHHHHh-
Confidence 5888999999999999988887 444443 688886544322 222334455533222 2455655555554
Q ss_pred cCCceEEEEEeCC
Q 045633 97 IKGKKFFLILDDV 109 (794)
Q Consensus 97 l~~~~~LlvlDdv 109 (794)
.+.-++|+|-+
T Consensus 167 --~~p~lvVIDSI 177 (456)
T COG1066 167 --EKPDLVVIDSI 177 (456)
T ss_pred --cCCCEEEEecc
Confidence 57899999988
No 431
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.69 E-value=0.024 Score=50.47 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.|+|+|+.|+|||||++.+.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999987
No 432
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.67 E-value=0.026 Score=65.41 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=20.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+.++++|+|+.|.||||+.+.+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHH
Confidence 457899999999999999988765
No 433
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.67 E-value=0.33 Score=49.07 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|..|.|||||++.++.
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~g 52 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLR 52 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4799999999999999999986
No 434
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.67 E-value=0.023 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++|.+.|++|+||||+|+++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 435
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.025 Score=50.78 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.2
Q ss_pred EEEEEecCCCcHHHHHHHHh
Q 045633 23 IISLVGMGGIGKTTLAQFAY 42 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~ 42 (794)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 48899999999999998886
No 436
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.66 E-value=0.024 Score=53.44 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++++|.|+.|+||||+|+.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999876
No 437
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.66 E-value=0.043 Score=48.91 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=26.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCcccc-ccCCeEEEEEecC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVI-ENFDKRIWVCVSD 61 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~~v~~~~ 61 (794)
++|.|+|..|+|||||++.+.+ +.. ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence 4799999999999999999998 444 4455555666543
No 438
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.63 E-value=0.46 Score=58.85 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.++=|.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 4566779999999999999999984
No 439
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.63 E-value=0.032 Score=49.60 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+.++|.|+|.+|+||||+.+.+..
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999987766
No 440
>PRK13947 shikimate kinase; Provisional
Probab=94.63 E-value=0.021 Score=53.35 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
-|.|+|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 441
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.61 E-value=0.02 Score=62.11 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..++|++.|.........+-+++.++|+.|+||||||+.+++
T Consensus 84 ~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 84 AIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 467778777433222234568999999999999999999886
No 442
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.58 E-value=0.052 Score=60.78 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=57.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccC----CeEEEEEecCCCCHHHHHHHHHHHhcCCCCC---CCCHHHHHHHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENF----DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN---LGELNSLLEYI 93 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f----~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l 93 (794)
-++..|.|.+|.||||++..+.. .+.... ...+-+.+....-...+.+.+......-... ..........+
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~--~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~Ti 237 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLL--ALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTI 237 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH--HHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchh
Confidence 36888999999999999987765 222111 1234444433333333333333222100000 00000001111
Q ss_pred HhHcC------------C---ceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh
Q 045633 94 HTSIK------------G---KKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET 141 (794)
Q Consensus 94 ~~~l~------------~---~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 141 (794)
.+.|. . .--+||+|++...+...+..+...++. ++|+|+.--...
T Consensus 238 HrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~~---~~rlIlvGD~~Q 297 (586)
T TIGR01447 238 HRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKALPP---NTKLILLGDKNQ 297 (586)
T ss_pred hhhhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhcCC---CCEEEEECChhh
Confidence 11111 1 113899999966555556666666654 678887755433
No 443
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.56 E-value=0.023 Score=51.72 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|.|.|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 477999999999999999887
No 444
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.38 Score=53.03 Aligned_cols=44 Identities=30% Similarity=0.243 Sum_probs=34.0
Q ss_pred CHHHHHHHHhcCCCcc---CCCCeEEEEEEecCCCcHHHHHHHHhCC
Q 045633 1 EEKNTLKSKLLCESNE---QQNAVQIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 1 ~e~~~i~~~l~~~~~~---~~~~~~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
||..++++.|.++..= +..-++=|.++|++|.|||.||++++..
T Consensus 160 eel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE 206 (596)
T COG0465 160 EELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE 206 (596)
T ss_pred HHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc
Confidence 4677888888866420 2345677889999999999999999984
No 445
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.55 E-value=0.13 Score=55.08 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=50.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccC-CeEEEEEecCC-CCHHHHHHHHHHHhcCC-------CCCCCCHH-----
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDP-FDEFRIAKAIIEGLEGS-------LPNLGELN----- 87 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~v~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 87 (794)
+.++|.|..|+|||||+..++.. ..... +.++++-+++. ..+.++.+++...=... ..+.....
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~--~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 56889999999999999887652 22221 35667766543 34455555555431111 11111111
Q ss_pred HHHHHHHhHc---CCceEEEEEeCC
Q 045633 88 SLLEYIHTSI---KGKKFFLILDDV 109 (794)
Q Consensus 88 ~~~~~l~~~l---~~~~~LlvlDdv 109 (794)
...-.+.+++ +++++|+++|++
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 1223344555 679999999998
No 446
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.55 E-value=0.028 Score=53.08 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++|+|+|+.|+||||||+.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999987
No 447
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.55 E-value=0.04 Score=59.53 Aligned_cols=86 Identities=20% Similarity=0.158 Sum_probs=45.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccc-cCCeE-EEEEecCCC-CHHHHHHHHHHHhcCCCCCCC-----CHHHHHHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIE-NFDKR-IWVCVSDPF-DEFRIAKAIIEGLEGSLPNLG-----ELNSLLEYI 93 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~-~~v~~~~~~-~~~~~~~~i~~~l~~~~~~~~-----~~~~~~~~l 93 (794)
+.++|+|++|+|||||++.+++ .+.. +-+.. +.+-+.+.+ .+.++.+.+-.++-....+.. ......-.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567999999999999999988 3322 22333 334444332 333333332111111111111 111222333
Q ss_pred HhHc--CCceEEEEEeCC
Q 045633 94 HTSI--KGKKFFLILDDV 109 (794)
Q Consensus 94 ~~~l--~~~~~LlvlDdv 109 (794)
.++| +++.+||++|++
T Consensus 495 Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHcCCCEEEEEeCc
Confidence 4444 688999999998
No 448
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.54 E-value=0.15 Score=55.38 Aligned_cols=40 Identities=28% Similarity=0.293 Sum_probs=29.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 61 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 61 (794)
.-.++.|.|.+|+|||||+.+++.. ....-..++||+..+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 4468899999999999999888663 222223578887654
No 449
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.53 E-value=0.045 Score=49.25 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=24.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCcccccc
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN 50 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~ 50 (794)
++..+|-++|..|.||||+|.++.. +....
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~--~L~~~ 50 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE--KLFAK 50 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH--HHHHc
Confidence 3567999999999999999999987 44444
No 450
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.53 E-value=0.16 Score=53.87 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=48.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC-CHHHHHHHHHHHhcCC-------CCCCCCHH-----H
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGS-------LPNLGELN-----S 88 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 88 (794)
+.++|.|..|+|||||++.++.. . ..+.++++-+++.. .+.++...++..-... ..+..... .
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~--~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRG--T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccC--C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 57899999999999999999862 1 22556666565433 3344555543321111 11111111 1
Q ss_pred HHHHHHhHc--CCceEEEEEeCC
Q 045633 89 LLEYIHTSI--KGKKFFLILDDV 109 (794)
Q Consensus 89 ~~~~l~~~l--~~~~~LlvlDdv 109 (794)
..-.+.+++ +++++|+++||+
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCh
Confidence 122233444 689999999998
No 451
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.0016 Score=62.34 Aligned_cols=57 Identities=26% Similarity=0.201 Sum_probs=27.0
Q ss_pred CCCccEEEEeecCCCccCCCCchhccccCccEEeecCCC--CCCcCCCCCCCCCcceeeeccc
Q 045633 602 PPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCP--RCEIMPPLGKLPSLEILRIAEM 662 (794)
Q Consensus 602 ~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~--~l~~l~~l~~L~~L~~L~l~~~ 662 (794)
++.|+.|.|+-|.+..+ ..+..|.+|++|+|..|. .+..+..+.+||+|+.|-|..+
T Consensus 40 Mp~lEVLsLSvNkIssL----~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSL----APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred cccceeEEeeccccccc----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 45555555555554443 224455555555555441 1112223445555555555543
No 452
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.51 E-value=0.022 Score=53.96 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999886
No 453
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=94.49 E-value=0.054 Score=52.62 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=27.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP 62 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 62 (794)
|.|+|||-|||||||.+..+.. .....-..|+.|-+..+
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsa--ala~~G~kVl~iGCDPK 39 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSA--ALAEMGKKVLQIGCDPK 39 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESSS
T ss_pred CeEEEEcCCCcccChhhhHHHH--HHHhccceeeEecccCC
Confidence 5689999999999999976665 33333346777766543
No 454
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.42 Score=43.77 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+.|.|+.|+|||||.+.++-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 3678999999999999999987
No 455
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.24 Score=54.99 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=23.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCcccccc
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIEN 50 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~ 50 (794)
...++.++|..|+||||++++++. +...|
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas--~lg~h 458 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVAS--ELGLH 458 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHH--HhCCc
Confidence 446788999999999999999998 55444
No 456
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.12 Score=58.67 Aligned_cols=145 Identities=20% Similarity=0.282 Sum_probs=78.3
Q ss_pred CHHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCcccccc-----C-CeEEE-EEecCCCCHHHHHHHHH
Q 045633 1 EEKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN-----F-DKRIW-VCVSDPFDEFRIAKAII 73 (794)
Q Consensus 1 ~e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-----f-~~~~~-v~~~~~~~~~~~~~~i~ 73 (794)
+|..++++.|..... +++ .++|.+|+|||++|.-++. ++... . +..++ +++ .
T Consensus 177 ~EI~r~iqIL~RR~K---NNP---vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~sLD~-------------g 235 (786)
T COG0542 177 EEIRRTIQILSRRTK---NNP---VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYSLDL-------------G 235 (786)
T ss_pred HHHHHHHHHHhccCC---CCC---eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEEecH-------------H
Confidence 366777787775432 222 3689999999999977666 33211 1 11111 111 1
Q ss_pred HHhcCCCCCCCCHHHHHHHHHhHcC-CceEEEEEeCCCCC----C-----ccChhhhHhhccCCCCCcEEEEEccchhhh
Q 045633 74 EGLEGSLPNLGELNSLLEYIHTSIK-GKKFFLILDDVWTD----D-----HSKWEPFHNCLMNGLCGSRILVTTRKETVA 143 (794)
Q Consensus 74 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~----~-----~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 143 (794)
.-..+.. --.+.++....+.+.++ .++.++++|.+... . .+.-.-+.+.|..+ .-+.|-.|...+..
T Consensus 236 ~LvAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG--eL~~IGATT~~EYR 312 (786)
T COG0542 236 SLVAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG--ELRCIGATTLDEYR 312 (786)
T ss_pred HHhcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC--CeEEEEeccHHHHH
Confidence 1111111 12355566666655553 44899999998541 0 11122244444432 23455444433222
Q ss_pred hc-------ccccceEEccCCChHhHHHHHHHH
Q 045633 144 RM-------MESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 144 ~~-------~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
+. -.....+.|.+.+.+++..+++-.
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 11 123568899999999999998653
No 457
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.45 E-value=0.038 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 567999999999999999999887
No 458
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.45 E-value=0.3 Score=50.29 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.+++|.|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 459
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.45 E-value=0.62 Score=44.84 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
=.+++|.|+.|.|||||++.++.-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 358999999999999999998874
No 460
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.44 E-value=0.28 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.+++|+|..|.|||||++.++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999998874
No 461
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.43 E-value=0.6 Score=42.01 Aligned_cols=125 Identities=19% Similarity=0.186 Sum_probs=72.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC-------------------ccccccCC--eEEEE--Ee------------------c
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND-------------------KDVIENFD--KRIWV--CV------------------S 60 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~-------------------~~~~~~f~--~~~~v--~~------------------~ 60 (794)
..|+|+|+.|.|||||....+-= ++-+..|. .+-|| +. .
T Consensus 37 e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ 116 (228)
T COG4181 37 ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116 (228)
T ss_pred ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence 36899999999999998666541 11112221 12222 11 1
Q ss_pred C--CCCHHHHHHHHHHHhcCCC------CCCCCHHHHHHHHHhHcCCceEEEEEeCC----CCCCccChhhhHhhccCCC
Q 045633 61 D--PFDEFRIAKAIIEGLEGSL------PNLGELNSLLEYIHTSIKGKKFFLILDDV----WTDDHSKWEPFHNCLMNGL 128 (794)
Q Consensus 61 ~--~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~~~~LlvlDdv----~~~~~~~~~~l~~~l~~~~ 128 (794)
. ..+.....+..+.+++... .+...-++-.-.+.+.+..++-+++-|.- +...-.+..++.-.+ +..
T Consensus 117 ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre 195 (228)
T COG4181 117 GESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRE 195 (228)
T ss_pred CCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhh
Confidence 1 3445566777777765431 12233444455677788888888998864 111112233333332 234
Q ss_pred CCcEEEEEccchhhhhccc
Q 045633 129 CGSRILVTTRKETVARMME 147 (794)
Q Consensus 129 ~gs~iivTtr~~~v~~~~~ 147 (794)
.|...++.|.++.++..|.
T Consensus 196 ~G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 196 RGTTLVLVTHDPQLAARCD 214 (228)
T ss_pred cCceEEEEeCCHHHHHhhh
Confidence 5788888888888887664
No 462
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.42 E-value=0.011 Score=56.69 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=22.8
Q ss_pred ccCCccceEEEcccCCCcc-ccccCccccCccCCcEEeccC
Q 045633 405 DQLTCLRALKIEDFGLGDK-TIEIPRGLENLIHLRYLQLSS 444 (794)
Q Consensus 405 ~~~~~L~~L~l~~~~~~~~-~~~lp~~i~~l~~L~~L~L~~ 444 (794)
..+..+..++|+||.++.- ...+...|.+-.+|+.-+++.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 3466677777777764311 122444455666677766665
No 463
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.40 E-value=0.16 Score=47.39 Aligned_cols=119 Identities=13% Similarity=-0.047 Sum_probs=65.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC---CCHHHHHHHHH--HH--hcCC-CCCCCC------
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP---FDEFRIAKAII--EG--LEGS-LPNLGE------ 85 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~---~~~~~~~~~i~--~~--l~~~-~~~~~~------ 85 (794)
....|-|+|..|-||||.|..++- +...+=-.|..|..-+. ..-...++.+- .. .+.. .....+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 346889999999999999976665 33333223444544332 22223333210 00 0110 000011
Q ss_pred -HHHHHHHHHhHc-CCceEEEEEeCCCC---CCccChhhhHhhccCCCCCcEEEEEccch
Q 045633 86 -LNSLLEYIHTSI-KGKKFFLILDDVWT---DDHSKWEPFHNCLMNGLCGSRILVTTRKE 140 (794)
Q Consensus 86 -~~~~~~~l~~~l-~~~~~LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 140 (794)
..+..+..++.+ .++-=++|||.+-. ......+++...+....++..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 112233344444 35567999999822 12234566777777777788999999974
No 464
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.40 E-value=0.15 Score=55.44 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=29.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 61 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 61 (794)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEE 118 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccc
Confidence 3468899999999999999888763 322234678887654
No 465
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.39 E-value=0.15 Score=54.26 Aligned_cols=86 Identities=17% Similarity=0.248 Sum_probs=48.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC-CCCHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGS-------LPNLGELNS--- 88 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 88 (794)
.=+.++|.|..|+|||||++.+.... ..+..+++.+++ ...+.+...+....=... ..+....+.
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 34578999999999999999988732 234455554544 334444444433210000 011111111
Q ss_pred --HHHHHHhHc--CCceEEEEEeCC
Q 045633 89 --LLEYIHTSI--KGKKFFLILDDV 109 (794)
Q Consensus 89 --~~~~l~~~l--~~~~~LlvlDdv 109 (794)
..-.+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 122233444 588999999998
No 466
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.38 E-value=0.19 Score=53.97 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=48.9
Q ss_pred EEEEEEecCCCcHHHHH-HHHhCCcccc-----ccCCeEEEEEecCCCCHHHHHHHHHHHhc-CC-------CCCCCCHH
Q 045633 22 QIISLVGMGGIGKTTLA-QFAYNDKDVI-----ENFDKRIWVCVSDPFDEFRIAKAIIEGLE-GS-------LPNLGELN 87 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa-~~~~~~~~~~-----~~f~~~~~v~~~~~~~~~~~~~~i~~~l~-~~-------~~~~~~~~ 87 (794)
+.++|.|-.|+|||+|| ..+.++..+. ..-+.++++.+++...-..-+.+.+++-+ .. ..+.....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 46789999999999997 5666643221 23356778888765433222333333322 11 01111111
Q ss_pred H-----HHHHHHhHc--CCceEEEEEeCC
Q 045633 88 S-----LLEYIHTSI--KGKKFFLILDDV 109 (794)
Q Consensus 88 ~-----~~~~l~~~l--~~~~~LlvlDdv 109 (794)
+ ....+.+++ +++.+|+|+||+
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 1 122233333 588999999998
No 467
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.36 E-value=0.26 Score=47.77 Aligned_cols=24 Identities=13% Similarity=-0.054 Sum_probs=20.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.-+++.|.|+.|.||||+.+.+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999987765
No 468
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.36 E-value=0.04 Score=55.49 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=34.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 61 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 61 (794)
..-+++.|+|.+|+|||++|.++.. +.......++||+..+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e 61 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEE 61 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecC
Confidence 4568999999999999999988877 4555577899998865
No 469
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.35 E-value=0.044 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+.++|.|.|+.|+|||||++++..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 568899999999999999999987
No 470
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.34 E-value=0.024 Score=31.99 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=15.8
Q ss_pred ccceEEEcccCCCccccccCccccCc
Q 045633 409 CLRALKIEDFGLGDKTIEIPRGLENL 434 (794)
Q Consensus 409 ~L~~L~l~~~~~~~~~~~lp~~i~~l 434 (794)
+|++|++++|+ ++.+|++|++|
T Consensus 1 ~L~~Ldls~n~----l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNN----LTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSE----ESEEGTTTTT-
T ss_pred CccEEECCCCc----CEeCChhhcCC
Confidence 47888888887 66787766543
No 471
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.32 E-value=0.03 Score=50.83 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=22.2
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccC
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENF 51 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f 51 (794)
-|.++||.|+||||+.+.+++ ...-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 477999999999999999997 444444
No 472
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.32 E-value=0.19 Score=47.58 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...+|.|.|..|+||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999887
No 473
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.32 E-value=0.042 Score=56.26 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=26.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 65 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~ 65 (794)
|++.+.|-||+||||+|.+.+-. ....=..+.-|+.....++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~--~A~~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA--LARRGKRTLLVSTDPAHSL 43 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--HHHTTS-EEEEESSTTTHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH--HhhCCCCeeEeecCCCccH
Confidence 57899999999999999666552 2222123555655444333
No 474
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.30 E-value=0.11 Score=51.00 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|+|.|..|+||||+|+++.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 475
>PRK13949 shikimate kinase; Provisional
Probab=94.29 E-value=0.031 Score=51.87 Aligned_cols=21 Identities=48% Similarity=0.482 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
-|.|+|+.|+||||+|+.+++
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 476
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.28 E-value=0.11 Score=53.53 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=18.3
Q ss_pred EEEEecCCCcHHHHHHHHhC
Q 045633 24 ISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~ 43 (794)
+++.|+.|+||||+|+.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 57899999999999998886
No 477
>PLN02348 phosphoribulokinase
Probab=94.27 E-value=0.16 Score=52.93 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+++-+|||.|..|+||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999887
No 478
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.25 E-value=0.03 Score=50.67 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|.|.|+.|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 479
>PRK05922 type III secretion system ATPase; Validated
Probab=94.24 E-value=0.17 Score=53.84 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=47.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC-CCHHHHHHHHHHHhcCCC-------CCCCCHH-----H
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGSL-------PNLGELN-----S 88 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~-----~ 88 (794)
+.++|.|..|+|||||++.+.... ..+..+++.+++. ....+.+.+......... .+..... .
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999998732 2234444444432 333444444433222111 1111111 1
Q ss_pred HHHHHHhHc--CCceEEEEEeCC
Q 045633 89 LLEYIHTSI--KGKKFFLILDDV 109 (794)
Q Consensus 89 ~~~~l~~~l--~~~~~LlvlDdv 109 (794)
..-.+.+++ +++++|+++|++
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 222334444 589999999998
No 480
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.21 E-value=0.16 Score=54.66 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=52.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC-CCHHHHHHHHHHHhcCC-------CCCCCCHH-----H
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-FDEFRIAKAIIEGLEGS-------LPNLGELN-----S 88 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~ 88 (794)
+.++|.|.+|+|||||+.++++... ..+-+.++++-+++. ..+.++...+...-... ..+..... .
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 5689999999999999988776322 123467777766543 34455555554421111 11111111 1
Q ss_pred HHHHHHhHc---CCceEEEEEeCC
Q 045633 89 LLEYIHTSI---KGKKFFLILDDV 109 (794)
Q Consensus 89 ~~~~l~~~l---~~~~~LlvlDdv 109 (794)
..-.+.+++ +++++|+++|++
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccc
Confidence 223344555 378999999999
No 481
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.21 E-value=0.62 Score=48.66 Aligned_cols=74 Identities=23% Similarity=0.175 Sum_probs=46.9
Q ss_pred HHHHHHhcCCCccC---CCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEec-CCCCHHHHHHHHHHHhcCC
Q 045633 4 NTLKSKLLCESNEQ---QNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS-DPFDEFRIAKAIIEGLEGS 79 (794)
Q Consensus 4 ~~i~~~l~~~~~~~---~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~~~~i~~~l~~~ 79 (794)
+++++.|-.+..+- ...+.+|-.+|.=|.||||-|-++++ .++.+=..+.-|++. ..+...+-++.++++.+.+
T Consensus 80 eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~--~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK--YLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred HHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH--HHHHcCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 55666665321111 34578999999999999999987777 333322335555543 2455667777788877644
No 482
>PF13479 AAA_24: AAA domain
Probab=94.19 E-value=0.15 Score=49.41 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=23.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP 62 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 62 (794)
-.+.|+|.+|+||||+|..+ +..++++....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 34669999999999999765 34666666443
No 483
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.18 E-value=0.036 Score=52.36 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=27.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEE
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWV 57 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v 57 (794)
.|+|.|+|+.|+|||||++++.. .....|..++..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceee
Confidence 36789999999999999999987 555566444443
No 484
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.17 E-value=0.27 Score=56.80 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP 81 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~ 81 (794)
.+++|++.+... ++|.|.|..|.||||-.-+++.+.-. ...+.+-+.-.+.-.+..+.+.++++++....
T Consensus 54 ~~~~i~~ai~~~--------~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 54 VRDEILKAIEQN--------QVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHHHHhC--------CEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 567888887754 68999999999999999665542111 22334444444455567788889998876522
Q ss_pred CC-------------------CCHHHHHHHHH-hHcCCceEEEEEeCCCCCCccChhhhHhh----ccCCCCCcEEEEEc
Q 045633 82 NL-------------------GELNSLLEYIH-TSIKGKKFFLILDDVWTDDHSKWEPFHNC----LMNGLCGSRILVTT 137 (794)
Q Consensus 82 ~~-------------------~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~~~~~~~l~~~----l~~~~~gs~iivTt 137 (794)
+. ....-+.+.+. +.+=.+=-.||+|.+.+... +-+-+... +....+.-||||+|
T Consensus 124 ~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl-~tDilLgllk~~~~~rr~DLKiIimS 202 (845)
T COG1643 124 ETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSL-NTDILLGLLKDLLARRRDDLKLIIMS 202 (845)
T ss_pred ceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhH-HHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 11 01112223332 22334456789999955321 22222222 22223358999988
Q ss_pred cch
Q 045633 138 RKE 140 (794)
Q Consensus 138 r~~ 140 (794)
=.-
T Consensus 203 ATl 205 (845)
T COG1643 203 ATL 205 (845)
T ss_pred ccc
Confidence 753
No 485
>PLN02200 adenylate kinase family protein
Probab=94.16 E-value=0.034 Score=54.58 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=22.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+.+|.|.|++|+||||+|+.++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998876
No 486
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.16 E-value=0.093 Score=51.94 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=46.6
Q ss_pred EEEEEEecCCCcHHHHH-HHHhCCccccccCCeE-EEEEecCC-CCHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 045633 22 QIISLVGMGGIGKTTLA-QFAYNDKDVIENFDKR-IWVCVSDP-FDEFRIAKAIIEGLEGS-------LPNLGELNS--- 88 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~~-~~v~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 88 (794)
+.++|.|..|+|||+|| ..+.++ ..-+.+ +++-+++. ....++.+++...-... ..+......
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 56789999999999996 556542 123444 56666554 34555555555321111 111111111
Q ss_pred --HHHHHHhHc--CCceEEEEEeCC
Q 045633 89 --LLEYIHTSI--KGKKFFLILDDV 109 (794)
Q Consensus 89 --~~~~l~~~l--~~~~~LlvlDdv 109 (794)
..-.+.+++ +++.+|+++||+
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 112222333 588999999998
No 487
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.15 E-value=0.059 Score=51.87 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999998873
No 488
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.15 E-value=0.054 Score=55.43 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=34.9
Q ss_pred HHHHHhHcCCceEEEEEeCCCCC-CccChhhhHhhccCC--CCCcEEEEEccchhhhhcccccceEE
Q 045633 90 LEYIHTSIKGKKFFLILDDVWTD-DHSKWEPFHNCLMNG--LCGSRILVTTRKETVARMMESTDVIS 153 (794)
Q Consensus 90 ~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~~~~~~~ 153 (794)
...+.+.+..+.-+++.|..... |....-.+...+... ..|.-+++.|+.+++.+.+.++..+-
T Consensus 515 R~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~ 581 (593)
T COG2401 515 RAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLIL 581 (593)
T ss_pred HHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEE
Confidence 44566677788788899987321 111111122222221 23666777777777777766655443
No 489
>PRK13768 GTPase; Provisional
Probab=94.15 E-value=0.056 Score=53.90 Aligned_cols=36 Identities=28% Similarity=0.232 Sum_probs=25.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEe
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV 59 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~ 59 (794)
.++.|.|+||+||||++..+... ....-..++.|+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~--l~~~g~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDW--LEEQGYDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHH--HHhcCCceEEEEC
Confidence 57889999999999999777652 2222234555554
No 490
>PF13245 AAA_19: Part of AAA domain
Probab=94.13 E-value=0.056 Score=42.15 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=16.7
Q ss_pred eEEEEEEecCCCcHHHHH-HHHhC
Q 045633 21 VQIISLVGMGGIGKTTLA-QFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa-~~~~~ 43 (794)
-+++.|.|++|.|||+++ ..+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356778999999999555 44443
No 491
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.10 E-value=0.36 Score=49.56 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=47.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEec-CCCCHHHHHHHHHHHhcCC-------CCCCCCHH-----
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS-DPFDEFRIAKAIIEGLEGS-------LPNLGELN----- 87 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 87 (794)
-+.++|.|..|+|||||++.+.... . -+..++.-++ +.....+........-... ..+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~--~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGT--T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCC--C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 3578999999999999999988732 2 2333444443 3344555555444432111 11111111
Q ss_pred HHHHHHHhHc--CCceEEEEEeCC
Q 045633 88 SLLEYIHTSI--KGKKFFLILDDV 109 (794)
Q Consensus 88 ~~~~~l~~~l--~~~~~LlvlDdv 109 (794)
...-.+.+++ +++.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1122233333 688999999998
No 492
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.09 E-value=0.027 Score=53.31 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=18.5
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++.|+|+.|.||||+.+.+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999988873
No 493
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.08 E-value=0.04 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.+|+|+|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999999773
No 494
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.07 E-value=0.049 Score=45.37 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=19.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHh
Q 045633 21 VQIISLVGMGGIGKTTLAQFAY 42 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~ 42 (794)
-..++|.|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3678999999999999998875
No 495
>PRK13948 shikimate kinase; Provisional
Probab=94.05 E-value=0.036 Score=51.81 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+.|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457788999999999999999987
No 496
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.04 E-value=0.044 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|.|.|.+|+||||+|+.++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 497
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.03 E-value=0.13 Score=54.85 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=48.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCC-------CCCCCC-----HHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGS-------LPNLGE-----LNS 88 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~-----~~~ 88 (794)
-+.++|.|..|+|||||++.++.... ....++.+.-.+.....+.....+..-+.. ..+... ...
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 35789999999999999998887321 112333332223355556655554442211 011111 111
Q ss_pred HHHHHHhHc--CCceEEEEEeCC
Q 045633 89 LLEYIHTSI--KGKKFFLILDDV 109 (794)
Q Consensus 89 ~~~~l~~~l--~~~~~LlvlDdv 109 (794)
....+.+++ +++++|+|+|+.
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecch
Confidence 222333444 578999999998
No 498
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.01 E-value=0.098 Score=50.22 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 499
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.00 E-value=0.051 Score=51.61 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=26.3
Q ss_pred EEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC
Q 045633 24 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 61 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 61 (794)
+.|.|.+|+|||++|.+++.. ....=..++|++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC
Confidence 679999999999999877662 222224678887654
No 500
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.98 E-value=0.055 Score=55.09 Aligned_cols=41 Identities=32% Similarity=0.331 Sum_probs=26.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 64 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~ 64 (794)
|.|+|+|-||+||||+|..++.. ....=..|.-|+.....+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~--La~~G~~VlliD~D~q~~ 41 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAA--LAEMGKKVMIVGCDPKAD 41 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEeCCCCCC
Confidence 46899999999999999766652 222112456666654443
Done!