Query 045633
Match_columns 794
No_of_seqs 406 out of 3257
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 06:24:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.2E-44 1.8E-48 399.5 22.3 310 2-336 136-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.7E-36 6E-41 339.9 15.9 278 2-328 136-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.2E-33 7.6E-38 349.4 24.8 301 2-335 132-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-31 5.4E-36 304.0 23.7 295 2-331 132-448 (591)
5 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-25 5.3E-30 256.3 20.3 140 352-500 28-177 (606)
6 3rgz_A Protein brassinosteroid 99.9 4.7E-26 1.6E-30 266.4 15.0 278 355-673 268-559 (768)
7 4eco_A Uncharacterized protein 99.9 2E-25 6.7E-30 254.9 15.8 373 356-760 81-600 (636)
8 3t6q_A CD180 antigen; protein- 99.9 1.4E-24 4.9E-29 248.2 21.8 420 351-792 28-539 (606)
9 3rgz_A Protein brassinosteroid 99.9 7.6E-25 2.6E-29 256.2 19.3 313 354-684 198-546 (768)
10 4ecn_A Leucine-rich repeat pro 99.9 9E-25 3.1E-29 253.1 19.0 380 356-789 323-840 (876)
11 4eco_A Uncharacterized protein 99.9 5.7E-25 2E-29 251.1 16.6 356 355-761 205-633 (636)
12 4ecn_A Leucine-rich repeat pro 99.9 1E-24 3.5E-29 252.7 18.5 344 354-761 446-841 (876)
13 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-23 4.4E-28 240.3 24.8 139 360-509 15-162 (606)
14 1o6v_A Internalin A; bacterial 99.9 2.1E-23 7.3E-28 229.7 23.3 61 692-759 327-387 (466)
15 2z7x_B TOLL-like receptor 1, v 99.9 2E-23 6.8E-28 234.0 23.2 121 356-489 21-150 (520)
16 2z63_A TOLL-like receptor 4, v 99.9 4.3E-24 1.5E-28 242.6 16.2 142 352-502 24-175 (570)
17 3t6q_A CD180 antigen; protein- 99.9 1.4E-23 4.8E-28 240.0 20.5 140 359-509 15-162 (606)
18 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-23 3.8E-28 237.8 17.5 383 353-760 23-510 (549)
19 3j0a_A TOLL-like receptor 5; m 99.9 2.6E-22 8.9E-27 237.2 28.0 318 354-705 22-390 (844)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.9E-22 6.5E-27 227.8 24.7 134 359-507 34-176 (562)
21 1o6v_A Internalin A; bacterial 99.9 8.5E-23 2.9E-27 224.9 21.3 342 356-792 46-391 (466)
22 2z63_A TOLL-like receptor 4, v 99.9 1.5E-23 5.1E-28 238.1 15.5 362 354-759 50-530 (570)
23 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-22 3.6E-27 236.0 21.6 149 352-509 21-180 (680)
24 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-22 4.5E-27 227.3 21.6 368 359-759 3-480 (520)
25 4fmz_A Internalin; leucine ric 99.9 8.6E-23 2.9E-27 216.0 18.9 298 355-759 43-345 (347)
26 3v47_A TOLL-like receptor 5B a 99.9 1.4E-22 4.8E-27 223.1 18.9 361 354-760 28-408 (455)
27 3o6n_A APL1; leucine-rich repe 99.9 2E-22 6.7E-27 216.8 19.5 301 377-760 43-352 (390)
28 4fmz_A Internalin; leucine ric 99.9 2.1E-22 7E-27 213.1 17.9 302 376-789 41-346 (347)
29 2z81_A CD282 antigen, TOLL-lik 99.9 5.2E-22 1.8E-26 224.2 20.8 389 366-790 15-511 (549)
30 3j0a_A TOLL-like receptor 5; m 99.9 1.5E-21 5.1E-26 230.7 25.2 324 360-706 8-372 (844)
31 3bz5_A Internalin-J, INLJ; leu 99.9 7.2E-22 2.5E-26 215.4 19.3 306 374-759 37-351 (457)
32 3o6n_A APL1; leucine-rich repe 99.9 6.5E-22 2.2E-26 212.7 18.6 299 354-734 43-350 (390)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.1E-22 2.1E-26 223.7 19.3 362 352-760 48-510 (562)
34 3oja_B Anopheles plasmodium-re 99.9 1.1E-21 3.6E-26 222.9 20.8 301 377-760 49-358 (597)
35 2id5_A Lingo-1, leucine rich r 99.9 1.2E-21 4.1E-26 216.8 20.4 309 359-760 14-333 (477)
36 1ziw_A TOLL-like receptor 3; i 99.9 6.8E-21 2.3E-25 220.8 26.4 179 604-793 382-577 (680)
37 3oja_B Anopheles plasmodium-re 99.9 2.5E-21 8.6E-26 219.8 18.4 300 354-735 49-357 (597)
38 3bz5_A Internalin-J, INLJ; leu 99.9 9.6E-21 3.3E-25 206.5 21.0 306 404-792 38-355 (457)
39 3v47_A TOLL-like receptor 5B a 99.9 5.4E-21 1.9E-25 210.4 16.7 328 354-740 52-412 (455)
40 4fcg_A Uncharacterized protein 99.8 1.2E-20 4.2E-25 196.7 18.3 227 406-757 79-311 (328)
41 4g8a_A TOLL-like receptor 4; l 99.8 2.9E-20 1E-24 214.1 20.9 421 350-789 46-580 (635)
42 2id5_A Lingo-1, leucine rich r 99.8 5.9E-20 2E-24 203.2 21.5 295 407-790 31-334 (477)
43 1jl5_A Outer protein YOPM; leu 99.8 5.8E-20 2E-24 200.1 19.6 354 355-792 10-412 (454)
44 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-19 4.7E-24 189.8 17.2 136 357-506 34-178 (332)
45 1xku_A Decorin; proteoglycan, 99.8 4.2E-19 1.4E-23 186.0 18.1 36 722-757 292-329 (330)
46 4fcg_A Uncharacterized protein 99.8 3.1E-19 1.1E-23 186.0 16.5 196 404-705 100-310 (328)
47 1jl5_A Outer protein YOPM; leu 99.8 2.1E-18 7.1E-23 187.9 23.7 317 358-759 73-408 (454)
48 1xku_A Decorin; proteoglycan, 99.8 1.1E-18 3.7E-23 182.9 19.9 284 409-786 32-329 (330)
49 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-19 4.1E-24 188.0 10.3 244 356-666 50-305 (313)
50 1ogq_A PGIP-2, polygalacturona 99.8 1.3E-19 4.3E-24 187.9 8.3 244 379-710 50-305 (313)
51 2ft3_A Biglycan; proteoglycan, 99.8 4.6E-18 1.6E-22 178.2 17.5 284 380-758 34-331 (332)
52 4g8a_A TOLL-like receptor 4; l 99.8 7E-18 2.4E-22 194.2 20.0 421 354-793 74-611 (635)
53 2z80_A TOLL-like receptor 2, v 99.7 1.4E-18 4.9E-23 183.7 8.9 248 408-760 52-314 (353)
54 3g06_A SSPH2 (leucine-rich rep 99.7 6.5E-17 2.2E-21 181.4 21.9 138 559-760 160-297 (622)
55 2z66_A Variable lymphocyte rec 99.7 6.9E-17 2.3E-21 167.2 16.2 64 693-759 196-260 (306)
56 3zyj_A Leucine-rich repeat-con 99.7 2E-16 6.9E-21 172.5 20.3 133 601-759 158-291 (440)
57 3zyi_A Leucine-rich repeat-con 99.7 2.2E-16 7.6E-21 172.8 19.7 134 600-759 168-302 (452)
58 3g06_A SSPH2 (leucine-rich rep 99.7 1.2E-16 4.2E-21 179.2 16.1 258 357-741 41-302 (622)
59 3zyi_A Leucine-rich repeat-con 99.7 1.3E-16 4.4E-21 174.7 15.4 235 358-663 56-301 (452)
60 1z7x_W Ribonuclease inhibitor; 99.7 3.3E-19 1.1E-23 196.5 -5.6 355 356-759 3-410 (461)
61 3ogk_B Coronatine-insensitive 99.7 1.5E-18 5.2E-23 197.7 -0.4 366 355-758 111-524 (592)
62 2z80_A TOLL-like receptor 2, v 99.7 7.3E-17 2.5E-21 170.6 12.3 257 364-663 39-312 (353)
63 3zyj_A Leucine-rich repeat-con 99.7 1.8E-16 6.1E-21 172.9 15.3 235 358-663 45-290 (440)
64 3o53_A Protein LRIM1, AGAP0063 99.7 7.3E-18 2.5E-22 175.1 3.6 249 396-762 22-277 (317)
65 2z66_A Variable lymphocyte rec 99.7 1.3E-16 4.3E-21 165.2 10.7 240 360-663 11-259 (306)
66 3ogk_B Coronatine-insensitive 99.7 6E-18 2E-22 192.8 -0.0 324 377-757 190-548 (592)
67 1ozn_A Reticulon 4 receptor; N 99.6 3.4E-16 1.2E-20 160.1 10.1 134 361-505 16-158 (285)
68 3o53_A Protein LRIM1, AGAP0063 99.6 1.3E-16 4.3E-21 165.7 6.6 241 376-712 31-278 (317)
69 3oja_A Leucine-rich immune mol 99.6 2.6E-16 8.8E-21 173.1 6.9 232 406-755 32-270 (487)
70 1wwl_A Monocyte differentiatio 99.6 1.6E-16 5.4E-21 164.6 3.3 35 723-759 274-308 (312)
71 1ozn_A Reticulon 4 receptor; N 99.6 9.5E-16 3.3E-20 156.7 9.0 96 407-506 31-135 (285)
72 2p1m_B Transport inhibitor res 99.6 6.2E-17 2.1E-21 184.5 -0.8 367 355-759 104-518 (594)
73 2xwt_C Thyrotropin receptor; s 99.6 2.3E-14 7.8E-19 142.1 16.0 211 462-759 19-238 (239)
74 1wwl_A Monocyte differentiatio 99.6 6E-16 2E-20 160.3 4.1 200 433-663 93-307 (312)
75 1h6u_A Internalin H; cell adhe 99.6 9.5E-15 3.3E-19 150.6 13.1 192 406-670 39-234 (308)
76 1z7x_W Ribonuclease inhibitor; 99.6 7E-17 2.4E-21 177.9 -4.4 368 379-789 3-411 (461)
77 2p1m_B Transport inhibitor res 99.5 2.2E-16 7.5E-21 180.0 -2.6 349 355-757 155-541 (594)
78 1p9a_G Platelet glycoprotein I 99.5 8.5E-14 2.9E-18 141.9 16.1 133 600-760 74-208 (290)
79 3oja_A Leucine-rich immune mol 99.5 1.6E-14 5.5E-19 158.8 11.0 210 377-663 32-248 (487)
80 2ast_B S-phase kinase-associat 99.5 2.3E-15 8E-20 158.0 3.7 111 556-706 164-282 (336)
81 1w5s_A Origin recognition comp 99.5 1E-13 3.4E-18 150.0 14.0 292 2-310 30-373 (412)
82 1h6u_A Internalin H; cell adhe 99.5 6.9E-14 2.4E-18 144.2 11.9 197 452-742 37-235 (308)
83 1p9a_G Platelet glycoprotein I 99.5 1.8E-13 6.3E-18 139.5 14.0 61 599-662 144-205 (290)
84 2o6q_A Variable lymphocyte rec 99.5 3.9E-13 1.3E-17 135.8 15.8 190 410-663 18-216 (270)
85 4ay9_X Follicle-stimulating ho 99.5 3.2E-13 1.1E-17 142.1 15.4 235 438-756 12-255 (350)
86 2qen_A Walker-type ATPase; unk 99.5 1.5E-12 5.1E-17 137.4 19.8 272 22-328 32-348 (350)
87 2z62_A TOLL-like receptor 4, v 99.5 9.5E-14 3.3E-18 141.0 9.5 119 379-506 28-155 (276)
88 2z62_A TOLL-like receptor 4, v 99.5 2.2E-13 7.7E-18 138.3 12.2 95 408-506 28-130 (276)
89 4glp_A Monocyte differentiatio 99.5 2.4E-13 8.3E-18 140.5 12.4 226 378-663 63-305 (310)
90 3rfs_A Internalin B, repeat mo 99.5 2E-13 6.9E-18 138.1 11.2 197 406-671 39-241 (272)
91 2o6q_A Variable lymphocyte rec 99.4 1E-12 3.4E-17 132.8 16.1 132 601-759 83-217 (270)
92 2xwt_C Thyrotropin receptor; s 99.4 3.9E-13 1.3E-17 133.2 11.7 127 368-506 23-162 (239)
93 4ay9_X Follicle-stimulating ho 99.4 6.7E-13 2.3E-17 139.6 13.8 83 408-494 30-121 (350)
94 2fna_A Conserved hypothetical 99.4 9.1E-12 3.1E-16 131.8 21.6 271 22-327 31-355 (357)
95 2ast_B S-phase kinase-associat 99.4 7.4E-14 2.5E-18 146.5 3.9 215 381-662 49-282 (336)
96 2ca6_A RAN GTPase-activating p 99.4 3.9E-14 1.3E-18 151.6 1.1 247 370-663 23-314 (386)
97 1h6t_A Internalin B; cell adhe 99.4 1E-12 3.5E-17 134.1 10.8 60 599-663 152-211 (291)
98 3rfs_A Internalin B, repeat mo 99.4 7.8E-13 2.7E-17 133.7 8.5 202 376-653 38-247 (272)
99 2ca6_A RAN GTPase-activating p 99.4 6.2E-14 2.1E-18 150.0 0.3 215 399-663 23-285 (386)
100 4glp_A Monocyte differentiatio 99.4 7.1E-13 2.4E-17 137.0 7.5 156 558-759 143-306 (310)
101 1m9s_A Internalin B; cell inva 99.3 7.9E-13 2.7E-17 148.1 7.1 79 406-491 41-123 (605)
102 2qby_B CDC6 homolog 3, cell di 99.3 7.3E-11 2.5E-15 126.1 20.5 284 2-310 28-341 (384)
103 4ezg_A Putative uncharacterize 99.3 8.9E-12 3.1E-16 119.1 11.5 152 557-759 41-193 (197)
104 1h6t_A Internalin B; cell adhe 99.3 4.9E-12 1.7E-16 129.0 9.6 127 599-759 86-212 (291)
105 2v1u_A Cell division control p 99.3 1.7E-10 6E-15 123.3 20.7 287 2-309 27-352 (387)
106 3m19_A Variable lymphocyte rec 99.3 7.3E-12 2.5E-16 124.9 8.9 155 560-760 35-192 (251)
107 3cvr_A Invasion plasmid antige 99.3 3E-11 1E-15 133.7 14.5 43 698-744 209-251 (571)
108 3cvr_A Invasion plasmid antige 99.3 4.9E-12 1.7E-16 140.0 8.2 176 409-669 60-247 (571)
109 1m9s_A Internalin B; cell inva 99.2 1.2E-11 4E-16 138.7 10.0 128 599-760 83-210 (605)
110 1fnn_A CDC6P, cell division co 99.2 2.9E-10 1E-14 121.6 19.6 290 2-310 25-353 (389)
111 3m19_A Variable lymphocyte rec 99.2 2.5E-11 8.6E-16 121.0 10.2 143 355-506 34-185 (251)
112 4ezg_A Putative uncharacterize 99.2 4.3E-11 1.5E-15 114.3 10.9 142 354-508 42-189 (197)
113 1xeu_A Internalin C; cellular 99.2 1.8E-11 6.3E-16 122.6 7.2 163 406-663 17-183 (263)
114 3goz_A Leucine-rich repeat-con 99.2 7.7E-12 2.6E-16 132.2 4.3 87 561-663 168-264 (362)
115 3e6j_A Variable lymphocyte rec 99.2 4.7E-11 1.6E-15 116.9 9.6 139 359-508 22-167 (229)
116 2qby_A CDC6 homolog 1, cell di 99.2 4.6E-10 1.6E-14 119.9 17.6 288 2-309 28-349 (386)
117 3sb4_A Hypothetical leucine ri 99.1 4E-10 1.4E-14 117.2 15.5 286 378-754 24-328 (329)
118 2v9t_B SLIT homolog 2 protein 99.1 6.5E-11 2.2E-15 115.1 8.8 139 359-508 14-160 (220)
119 4b8c_D Glucose-repressible alc 99.1 5.6E-11 1.9E-15 136.7 9.7 149 356-509 173-325 (727)
120 3goz_A Leucine-rich repeat-con 99.1 1.1E-11 3.7E-16 131.1 1.5 236 376-663 19-295 (362)
121 2v70_A SLIT-2, SLIT homolog 2 99.1 1.4E-10 4.8E-15 112.8 9.1 140 358-508 13-161 (220)
122 2ell_A Acidic leucine-rich nuc 99.1 9.5E-11 3.3E-15 108.7 7.5 101 404-509 45-156 (168)
123 1njg_A DNA polymerase III subu 99.1 1.1E-09 3.7E-14 108.9 15.1 105 98-206 124-230 (250)
124 2ell_A Acidic leucine-rich nuc 99.1 1.1E-10 3.6E-15 108.5 6.8 131 354-495 22-165 (168)
125 2v9t_B SLIT homolog 2 protein 99.1 6.8E-10 2.3E-14 107.9 11.7 131 603-759 32-164 (220)
126 2je0_A Acidic leucine-rich nuc 99.0 8.1E-11 2.8E-15 106.8 4.1 120 378-507 16-147 (149)
127 2o6s_A Variable lymphocyte rec 99.0 5.6E-10 1.9E-14 107.6 9.9 137 360-507 11-155 (208)
128 1a9n_A U2A', U2A'; complex (nu 99.0 2E-10 6.8E-15 107.4 6.3 126 374-510 14-150 (176)
129 3e6j_A Variable lymphocyte rec 99.0 6E-10 2E-14 109.1 9.7 131 352-491 36-173 (229)
130 2chg_A Replication factor C sm 99.0 2.9E-09 9.9E-14 104.0 14.4 174 3-203 26-203 (226)
131 1xeu_A Internalin C; cellular 99.0 8.7E-10 3E-14 110.4 10.7 139 355-510 40-182 (263)
132 2v70_A SLIT-2, SLIT homolog 2 99.0 7.9E-10 2.7E-14 107.4 8.9 130 352-490 28-166 (220)
133 1a9n_A U2A', U2A'; complex (nu 99.0 5.6E-10 1.9E-14 104.3 6.5 138 598-762 14-155 (176)
134 2o6s_A Variable lymphocyte rec 98.9 3.1E-09 1.1E-13 102.4 10.7 141 352-507 24-172 (208)
135 1dce_A Protein (RAB geranylger 98.9 1.4E-09 4.8E-14 121.1 8.6 95 409-509 442-542 (567)
136 2xot_A Amphoterin-induced prot 98.9 2.1E-09 7.3E-14 113.3 9.2 138 359-507 21-170 (361)
137 2je0_A Acidic leucine-rich nuc 98.9 1.1E-09 3.7E-14 99.2 4.4 121 354-485 15-148 (149)
138 2xot_A Amphoterin-induced prot 98.9 3E-09 1E-13 112.1 7.9 132 353-493 36-179 (361)
139 4b8c_D Glucose-repressible alc 98.8 1.7E-09 5.8E-14 124.4 5.8 112 371-492 216-331 (727)
140 2wfh_A SLIT homolog 2 protein 98.8 1.2E-08 4.1E-13 96.6 10.1 125 606-760 13-139 (193)
141 1w8a_A SLIT protein; signaling 98.8 5.4E-09 1.8E-13 99.1 7.2 120 359-489 11-138 (192)
142 1sxj_B Activator 1 37 kDa subu 98.8 1.8E-08 6.3E-13 104.5 11.7 176 3-205 30-211 (323)
143 1w8a_A SLIT protein; signaling 98.8 2.1E-08 7.1E-13 95.0 10.3 125 606-759 11-138 (192)
144 1dce_A Protein (RAB geranylger 98.8 5.8E-09 2E-13 116.1 6.5 197 356-566 349-566 (567)
145 2wfh_A SLIT homolog 2 protein 98.8 1.6E-08 5.5E-13 95.7 8.6 95 409-507 32-133 (193)
146 2o6r_A Variable lymphocyte rec 98.7 1.9E-08 6.6E-13 93.9 8.7 117 360-487 11-134 (177)
147 1hqc_A RUVB; extended AAA-ATPa 98.7 6.1E-08 2.1E-12 100.5 12.8 156 21-207 38-214 (324)
148 1ds9_A Outer arm dynein; leuci 98.7 1.8E-10 6.2E-15 110.0 -6.1 105 374-490 43-153 (198)
149 3te6_A Regulatory protein SIR3 98.7 2.1E-07 7E-12 93.9 15.5 164 2-172 28-213 (318)
150 3sb4_A Hypothetical leucine ri 98.7 8.4E-08 2.9E-12 99.6 13.2 287 355-730 24-328 (329)
151 2o6r_A Variable lymphocyte rec 98.7 9.7E-08 3.3E-12 89.1 11.7 125 605-759 9-136 (177)
152 4fdw_A Leucine rich hypothetic 98.6 1.3E-06 4.5E-11 92.6 18.4 238 431-758 132-381 (401)
153 1ds9_A Outer arm dynein; leuci 98.6 2.1E-09 7E-14 102.7 -3.2 102 400-507 40-147 (198)
154 2r9u_A Variable lymphocyte rec 98.5 1.3E-07 4.5E-12 87.6 8.2 72 435-506 33-111 (174)
155 1iqp_A RFCS; clamp loader, ext 98.5 1.6E-07 5.4E-12 97.6 9.5 158 22-203 47-211 (327)
156 3g39_A Variable lymphocyte rec 98.5 1.8E-07 6.3E-12 86.3 8.1 92 410-507 11-109 (170)
157 3bos_A Putative DNA replicatio 98.5 1.9E-07 6.5E-12 92.1 7.1 153 20-203 51-216 (242)
158 2r9u_A Variable lymphocyte rec 98.4 2.1E-07 7.3E-12 86.2 6.1 88 408-499 33-127 (174)
159 1jr3_A DNA polymerase III subu 98.4 1.6E-06 5.4E-11 91.8 13.6 173 21-204 38-221 (373)
160 4fs7_A Uncharacterized protein 98.4 5.2E-06 1.8E-10 88.3 17.3 304 373-757 65-376 (394)
161 4fs7_A Uncharacterized protein 98.4 3.8E-06 1.3E-10 89.5 15.4 315 356-752 71-393 (394)
162 3g39_A Variable lymphocyte rec 98.4 4.6E-07 1.6E-11 83.7 7.0 82 408-493 30-118 (170)
163 2chq_A Replication factor C sm 98.4 1.7E-06 5.8E-11 89.3 12.1 156 22-201 39-201 (319)
164 4fdw_A Leucine rich hypothetic 98.4 3.5E-06 1.2E-10 89.3 14.1 113 380-506 136-254 (401)
165 1sxj_D Activator 1 41 kDa subu 98.3 7.5E-06 2.6E-10 85.8 15.2 183 3-201 46-232 (353)
166 1a5t_A Delta prime, HOLB; zinc 98.3 5.2E-06 1.8E-10 85.8 13.5 95 99-202 107-203 (334)
167 2z4s_A Chromosomal replication 98.3 3E-06 1E-10 90.9 11.2 160 21-201 130-303 (440)
168 1jbk_A CLPB protein; beta barr 98.3 2.4E-06 8.1E-11 80.8 9.3 140 3-166 31-194 (195)
169 2ifg_A High affinity nerve gro 98.2 3.2E-06 1.1E-10 88.4 10.6 39 622-661 25-65 (347)
170 2ra8_A Uncharacterized protein 98.2 2.3E-07 7.7E-12 96.6 1.2 144 598-759 167-319 (362)
171 3pfi_A Holliday junction ATP-d 98.2 2.4E-05 8.3E-10 81.2 16.0 152 20-203 54-226 (338)
172 3pvs_A Replication-associated 98.2 9.1E-06 3.1E-10 86.9 12.0 156 20-201 49-212 (447)
173 1l8q_A Chromosomal replication 98.1 6.4E-06 2.2E-10 85.0 9.9 156 20-199 36-203 (324)
174 1sxj_E Activator 1 40 kDa subu 98.1 2.2E-05 7.4E-10 82.3 13.2 101 99-202 133-235 (354)
175 1sxj_A Activator 1 95 kDa subu 98.1 1.3E-05 4.6E-10 88.0 11.7 171 20-204 76-253 (516)
176 3uk6_A RUVB-like 2; hexameric 98.0 6.5E-05 2.2E-09 79.0 15.2 96 101-201 190-300 (368)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.0 7.5E-05 2.6E-09 74.3 14.8 161 20-203 38-221 (262)
178 2ifg_A High affinity nerve gro 98.0 8.3E-06 2.8E-10 85.2 7.9 82 424-506 21-109 (347)
179 1d2n_A N-ethylmaleimide-sensit 98.0 4.1E-05 1.4E-09 76.7 12.2 149 19-195 62-228 (272)
180 3h4m_A Proteasome-activating n 98.0 3.5E-05 1.2E-09 77.9 11.6 157 20-202 50-229 (285)
181 3syl_A Protein CBBX; photosynt 98.0 5.2E-05 1.8E-09 77.6 12.9 135 20-174 66-221 (309)
182 3u61_B DNA polymerase accessor 98.0 5.1E-05 1.7E-09 78.2 12.7 167 3-199 35-211 (324)
183 2ra8_A Uncharacterized protein 97.9 2.8E-06 9.5E-11 88.3 1.8 175 593-789 129-320 (362)
184 3e4g_A ATP synthase subunit S, 97.9 3.5E-06 1.2E-10 76.5 1.8 67 693-762 82-154 (176)
185 2gno_A DNA polymerase III, gam 97.9 8.1E-05 2.8E-09 75.2 12.0 132 21-170 18-152 (305)
186 4gt6_A Cell surface protein; l 97.8 0.00054 1.8E-08 72.6 18.7 124 374-505 58-187 (394)
187 2w58_A DNAI, primosome compone 97.8 2.3E-05 7.8E-10 74.5 7.0 100 22-139 55-158 (202)
188 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00037 1.3E-08 71.3 16.5 161 21-205 45-224 (322)
189 3ec2_A DNA replication protein 97.8 1.9E-05 6.5E-10 73.5 6.2 100 21-139 38-142 (180)
190 1sxj_C Activator 1 40 kDa subu 97.8 0.00011 3.6E-09 76.3 12.3 157 23-200 48-208 (340)
191 4gt6_A Cell surface protein; l 97.8 0.002 6.8E-08 68.2 22.2 105 625-758 261-368 (394)
192 2qp9_X Vacuolar protein sortin 97.8 0.00019 6.6E-09 74.5 13.7 156 22-204 85-261 (355)
193 3n70_A Transport activator; si 97.8 6.5E-05 2.2E-09 66.9 8.6 90 23-139 26-115 (145)
194 3e4g_A ATP synthase subunit S, 97.8 2.3E-05 7.8E-10 71.1 5.6 91 559-669 60-156 (176)
195 3eie_A Vacuolar protein sortin 97.8 0.00016 5.6E-09 74.1 12.4 160 21-205 51-229 (322)
196 4b4t_J 26S protease regulatory 97.7 0.00059 2E-08 70.5 15.2 152 20-197 181-354 (405)
197 2kjq_A DNAA-related protein; s 97.7 1.9E-05 6.6E-10 70.4 3.5 38 22-61 37-74 (149)
198 2p65_A Hypothetical protein PF 97.7 3.5E-05 1.2E-09 72.1 5.1 36 2-43 30-65 (187)
199 3d8b_A Fidgetin-like protein 1 97.6 0.00056 1.9E-08 71.2 13.1 161 20-205 116-296 (357)
200 2zan_A Vacuolar protein sortin 97.5 0.00065 2.2E-08 72.8 13.7 162 20-204 166-345 (444)
201 3cf0_A Transitional endoplasmi 97.5 0.0008 2.7E-08 68.2 13.6 154 20-198 48-222 (301)
202 4fcw_A Chaperone protein CLPB; 97.5 0.00018 6.2E-09 73.6 8.8 110 21-139 47-169 (311)
203 3b9p_A CG5977-PA, isoform A; A 97.5 0.0013 4.4E-08 66.6 14.8 159 21-204 54-233 (297)
204 3co5_A Putative two-component 97.5 0.00016 5.6E-09 64.0 6.3 86 23-139 29-115 (143)
205 3vfd_A Spastin; ATPase, microt 97.4 0.0015 5.1E-08 69.0 14.7 159 21-204 148-326 (389)
206 4b4t_L 26S protease subunit RP 97.4 0.0017 5.8E-08 68.3 14.4 152 20-197 214-387 (437)
207 3un9_A NLR family member X1; l 97.4 1.4E-05 4.8E-10 83.8 -1.5 125 379-506 72-217 (372)
208 3un9_A NLR family member X1; l 97.4 3.4E-05 1.2E-09 80.9 1.0 134 356-490 101-252 (372)
209 1qvr_A CLPB protein; coiled co 97.3 0.00054 1.9E-08 80.2 10.7 144 2-169 178-344 (854)
210 1in4_A RUVB, holliday junction 97.3 0.0086 3E-07 61.5 18.2 47 151-201 174-220 (334)
211 1lv7_A FTSH; alpha/beta domain 97.3 0.0015 5.1E-08 64.5 12.0 155 22-201 46-222 (257)
212 3t15_A Ribulose bisphosphate c 97.3 0.00081 2.8E-08 67.7 9.9 25 19-43 34-58 (293)
213 3hu3_A Transitional endoplasmi 97.3 0.00068 2.3E-08 73.2 9.9 159 20-203 237-414 (489)
214 4h09_A Hypothetical leucine ri 97.2 0.0037 1.3E-07 65.8 14.7 16 401-416 62-77 (379)
215 4b4t_H 26S protease regulatory 97.2 0.0032 1.1E-07 66.0 13.7 152 20-197 242-415 (467)
216 4b4t_K 26S protease regulatory 97.2 0.0017 5.8E-08 68.2 11.2 151 20-196 205-378 (428)
217 3pxg_A Negative regulator of g 97.2 0.0019 6.5E-08 69.8 11.7 138 2-171 188-339 (468)
218 4b4t_M 26S protease regulatory 97.1 0.0015 5E-08 68.7 10.3 151 20-196 214-386 (434)
219 4b4t_I 26S protease regulatory 97.1 0.0027 9.3E-08 65.8 11.8 151 20-196 215-387 (437)
220 2bjv_A PSP operon transcriptio 97.1 0.002 7E-08 63.8 10.8 38 22-61 30-67 (265)
221 1ofh_A ATP-dependent HSL prote 97.1 0.0029 9.9E-08 64.4 12.2 23 21-43 50-72 (310)
222 2ce7_A Cell division protein F 97.1 0.0032 1.1E-07 67.3 12.4 151 22-197 50-221 (476)
223 2c9o_A RUVB-like 1; hexameric 97.1 0.002 6.8E-08 69.5 10.8 94 102-200 297-406 (456)
224 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0054 1.8E-07 71.0 14.6 146 2-170 194-362 (758)
225 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00032 1.1E-08 69.9 3.4 67 22-110 124-192 (331)
226 2qgz_A Helicase loader, putati 97.0 0.00037 1.3E-08 70.6 4.0 38 21-60 152-190 (308)
227 3pxi_A Negative regulator of g 97.0 0.0013 4.5E-08 76.1 9.0 129 21-170 521-675 (758)
228 2cvh_A DNA repair and recombin 97.0 0.0031 1.1E-07 60.5 10.3 84 21-110 20-115 (220)
229 3m6a_A ATP-dependent protease 97.0 0.001 3.4E-08 73.3 7.5 139 20-170 107-266 (543)
230 4h09_A Hypothetical leucine ri 97.0 0.01 3.5E-07 62.3 15.0 117 355-484 45-165 (379)
231 1ojl_A Transcriptional regulat 96.9 0.0011 3.7E-08 67.1 6.4 21 23-43 27-47 (304)
232 2b8t_A Thymidine kinase; deoxy 96.9 0.00064 2.2E-08 64.7 4.2 112 21-140 12-126 (223)
233 1io0_A Tropomodulin; LRR prote 96.8 0.00059 2E-08 63.5 3.2 70 374-444 31-102 (185)
234 2x8a_A Nuclear valosin-contain 96.7 0.011 3.6E-07 58.7 11.9 127 24-171 47-192 (274)
235 3cf2_A TER ATPase, transitiona 96.7 0.0088 3E-07 67.9 12.3 154 19-197 236-407 (806)
236 2r62_A Cell division protease 96.7 0.00033 1.1E-08 69.8 0.5 129 23-171 46-197 (268)
237 3pxi_A Negative regulator of g 96.7 0.0058 2E-07 70.6 10.9 137 2-170 188-338 (758)
238 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0065 2.2E-07 58.8 9.6 114 22-140 24-168 (235)
239 1jr3_D DNA polymerase III, del 96.6 0.022 7.6E-07 58.7 14.0 156 20-202 17-183 (343)
240 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0022 7.5E-08 74.3 6.9 107 20-139 487-607 (758)
241 1g5t_A COB(I)alamin adenosyltr 96.5 0.0014 4.6E-08 60.3 3.5 117 21-140 28-163 (196)
242 3hr8_A Protein RECA; alpha and 96.5 0.005 1.7E-07 63.0 8.1 82 21-109 61-148 (356)
243 1qvr_A CLPB protein; coiled co 96.4 0.0031 1.1E-07 73.8 6.6 109 21-139 588-710 (854)
244 3rw6_A Nuclear RNA export fact 96.4 0.00065 2.2E-08 66.6 0.7 64 601-665 168-233 (267)
245 3rw6_A Nuclear RNA export fact 96.4 0.003 1E-07 61.9 5.4 47 401-448 163-211 (267)
246 1ixz_A ATP-dependent metallopr 96.3 0.0099 3.4E-07 58.4 8.9 127 24-171 52-200 (254)
247 1io0_A Tropomodulin; LRR prote 96.3 0.00041 1.4E-08 64.6 -1.4 110 397-506 25-157 (185)
248 2dhr_A FTSH; AAA+ protein, hex 96.3 0.026 9E-07 60.7 12.5 145 24-197 67-236 (499)
249 3io5_A Recombination and repai 96.2 0.013 4.5E-07 58.0 8.7 81 22-109 29-120 (333)
250 1um8_A ATP-dependent CLP prote 96.2 0.038 1.3E-06 57.8 12.9 23 21-43 72-94 (376)
251 1xp8_A RECA protein, recombina 96.2 0.013 4.6E-07 60.3 9.1 82 22-110 75-162 (366)
252 2r44_A Uncharacterized protein 96.2 0.018 6.1E-07 59.1 10.1 131 23-172 48-200 (331)
253 1n0w_A DNA repair protein RAD5 96.2 0.0087 3E-07 58.3 7.3 54 22-76 25-82 (243)
254 1v5w_A DMC1, meiotic recombina 96.1 0.017 5.9E-07 59.3 9.7 56 20-76 121-180 (343)
255 2z43_A DNA repair and recombin 96.0 0.013 4.3E-07 59.9 7.7 55 22-77 108-166 (324)
256 2i1q_A DNA repair and recombin 95.9 0.012 4.2E-07 60.0 7.4 57 20-77 97-167 (322)
257 1iy2_A ATP-dependent metallopr 95.9 0.03 1E-06 55.8 10.0 127 24-171 76-224 (278)
258 2px0_A Flagellar biosynthesis 95.9 0.015 5E-07 58.3 7.5 86 20-109 104-191 (296)
259 2zr9_A Protein RECA, recombina 95.8 0.02 6.9E-07 58.8 8.5 82 21-109 61-148 (349)
260 1vma_A Cell division protein F 95.8 0.033 1.1E-06 55.9 9.7 89 19-109 102-195 (306)
261 1u94_A RECA protein, recombina 95.7 0.012 4.3E-07 60.4 6.5 82 21-109 63-150 (356)
262 2orw_A Thymidine kinase; TMTK, 95.7 0.0017 6E-08 60.0 0.1 22 22-43 4-25 (184)
263 1cr0_A DNA primase/helicase; R 95.7 0.021 7.2E-07 57.5 7.9 37 22-60 36-73 (296)
264 2pze_A Cystic fibrosis transme 95.6 0.09 3.1E-06 50.3 11.6 23 22-44 35-57 (229)
265 2cbz_A Multidrug resistance-as 95.5 0.058 2E-06 52.0 10.1 23 22-44 32-54 (237)
266 3dm5_A SRP54, signal recogniti 95.5 0.071 2.4E-06 56.0 11.1 24 20-43 99-122 (443)
267 3c8u_A Fructokinase; YP_612366 95.5 0.0084 2.9E-07 56.8 3.8 25 19-43 20-44 (208)
268 3nbx_X ATPase RAVA; AAA+ ATPas 95.5 0.057 2E-06 58.1 10.7 21 23-43 43-63 (500)
269 1qhx_A CPT, protein (chloramph 95.3 0.0059 2E-07 56.2 2.2 22 22-43 4-25 (178)
270 1zp6_A Hypothetical protein AT 95.2 0.01 3.6E-07 55.2 3.6 23 21-43 9-31 (191)
271 1rz3_A Hypothetical protein rb 95.2 0.019 6.5E-07 53.9 5.4 37 4-43 8-44 (201)
272 1sky_E F1-ATPase, F1-ATP synth 95.2 0.028 9.7E-07 59.2 7.1 49 23-73 153-203 (473)
273 3lw7_A Adenylate kinase relate 95.1 0.01 3.4E-07 54.5 3.1 19 23-41 3-21 (179)
274 3kl4_A SRP54, signal recogniti 95.1 0.069 2.4E-06 56.1 9.7 40 19-60 95-134 (433)
275 1odf_A YGR205W, hypothetical 3 95.1 0.014 4.8E-07 58.2 4.1 26 18-43 28-53 (290)
276 1pzn_A RAD51, DNA repair and r 95.0 0.046 1.6E-06 56.2 8.0 44 20-63 130-177 (349)
277 2xxa_A Signal recognition part 95.0 0.12 4.1E-06 54.6 11.3 41 19-61 98-139 (433)
278 1ly1_A Polynucleotide kinase; 95.0 0.011 3.9E-07 54.3 3.1 22 22-43 3-24 (181)
279 3jvv_A Twitching mobility prot 95.0 0.0064 2.2E-07 62.5 1.4 111 22-143 124-234 (356)
280 3kb2_A SPBC2 prophage-derived 95.0 0.011 3.7E-07 54.0 2.8 22 22-43 2-23 (173)
281 3fwy_A Light-independent proto 95.0 0.021 7.2E-07 57.6 5.1 41 19-61 46-86 (314)
282 3lda_A DNA repair protein RAD5 94.9 0.056 1.9E-06 56.4 8.2 55 22-77 179-237 (400)
283 1gvn_B Zeta; postsegregational 94.8 0.023 7.8E-07 56.7 5.0 38 5-43 18-55 (287)
284 3trf_A Shikimate kinase, SK; a 94.8 0.0097 3.3E-07 55.1 2.1 23 21-43 5-27 (185)
285 3vaa_A Shikimate kinase, SK; s 94.8 0.013 4.4E-07 55.0 3.0 23 21-43 25-47 (199)
286 1kgd_A CASK, peripheral plasma 94.8 0.013 4.4E-07 54.0 2.8 22 22-43 6-27 (180)
287 3uie_A Adenylyl-sulfate kinase 94.8 0.017 5.9E-07 54.2 3.8 24 20-43 24-47 (200)
288 1kag_A SKI, shikimate kinase I 94.8 0.012 4.2E-07 53.7 2.6 22 22-43 5-26 (173)
289 1zuh_A Shikimate kinase; alpha 94.7 0.012 4.1E-07 53.5 2.4 24 20-43 6-29 (168)
290 1nks_A Adenylate kinase; therm 94.7 0.023 7.8E-07 52.9 4.4 22 22-43 2-23 (194)
291 2qt1_A Nicotinamide riboside k 94.6 0.023 7.7E-07 53.7 4.2 25 19-43 19-43 (207)
292 3e70_C DPA, signal recognition 94.6 0.076 2.6E-06 53.8 8.2 57 19-77 127-184 (328)
293 3ice_A Transcription terminati 94.6 0.02 7E-07 58.2 3.9 40 21-62 174-215 (422)
294 3bh0_A DNAB-like replicative h 94.6 0.18 6.2E-06 50.9 11.1 51 21-75 68-118 (315)
295 1knq_A Gluconate kinase; ALFA/ 94.6 0.019 6.5E-07 52.5 3.4 24 20-43 7-30 (175)
296 2rhm_A Putative kinase; P-loop 94.6 0.019 6.4E-07 53.5 3.4 24 20-43 4-27 (193)
297 1uf9_A TT1252 protein; P-loop, 94.6 0.019 6.5E-07 54.0 3.4 25 19-43 6-30 (203)
298 2ffh_A Protein (FFH); SRP54, s 94.6 0.08 2.8E-06 55.5 8.4 39 20-60 97-135 (425)
299 2bdt_A BH3686; alpha-beta prot 94.5 0.02 6.7E-07 53.2 3.4 22 22-43 3-24 (189)
300 2yvu_A Probable adenylyl-sulfa 94.5 0.029 1E-06 51.8 4.6 24 20-43 12-35 (186)
301 4gp7_A Metallophosphoesterase; 94.5 0.019 6.7E-07 52.2 3.3 23 21-43 9-31 (171)
302 1j8m_F SRP54, signal recogniti 94.5 0.072 2.5E-06 53.2 7.7 87 21-109 98-189 (297)
303 1ypw_A Transitional endoplasmi 94.5 0.044 1.5E-06 63.3 6.8 132 20-172 237-387 (806)
304 1xjc_A MOBB protein homolog; s 94.5 0.023 8E-07 51.0 3.6 24 20-43 3-26 (169)
305 1ex7_A Guanylate kinase; subst 94.5 0.0093 3.2E-07 54.8 0.9 22 22-43 2-23 (186)
306 1ukz_A Uridylate kinase; trans 94.5 0.024 8E-07 53.4 3.8 25 19-43 13-37 (203)
307 4a1f_A DNAB helicase, replicat 94.4 0.091 3.1E-06 53.2 8.2 51 22-76 47-97 (338)
308 3asz_A Uridine kinase; cytidin 94.4 0.023 7.8E-07 53.9 3.6 24 20-43 5-28 (211)
309 1jjv_A Dephospho-COA kinase; P 94.4 0.022 7.6E-07 53.7 3.5 22 22-43 3-24 (206)
310 3a00_A Guanylate kinase, GMP k 94.4 0.015 5.1E-07 53.9 2.2 22 22-43 2-23 (186)
311 4eun_A Thermoresistant glucoki 94.3 0.021 7.2E-07 53.6 3.2 24 20-43 28-51 (200)
312 2p5t_B PEZT; postsegregational 94.3 0.027 9.1E-07 55.2 4.0 39 4-43 16-54 (253)
313 1ls1_A Signal recognition part 94.3 0.077 2.6E-06 53.0 7.4 39 20-60 97-135 (295)
314 3tr0_A Guanylate kinase, GMP k 94.3 0.021 7.2E-07 53.8 3.2 22 22-43 8-29 (205)
315 3t61_A Gluconokinase; PSI-biol 94.3 0.018 6.1E-07 54.2 2.6 23 21-43 18-40 (202)
316 1ye8_A Protein THEP1, hypothet 94.3 0.023 7.7E-07 52.1 3.2 21 23-43 2-22 (178)
317 2plr_A DTMP kinase, probable t 94.3 0.041 1.4E-06 52.1 5.2 22 22-43 5-26 (213)
318 2ze6_A Isopentenyl transferase 94.3 0.023 7.9E-07 55.5 3.4 22 22-43 2-23 (253)
319 1kht_A Adenylate kinase; phosp 94.3 0.02 6.8E-07 53.2 2.8 22 22-43 4-25 (192)
320 1y63_A LMAJ004144AAA protein; 94.3 0.02 6.8E-07 52.9 2.7 23 21-43 10-32 (184)
321 2if2_A Dephospho-COA kinase; a 94.2 0.023 7.9E-07 53.5 3.3 21 23-43 3-23 (204)
322 3umf_A Adenylate kinase; rossm 94.2 0.028 9.5E-07 53.1 3.7 26 18-43 26-51 (217)
323 1tev_A UMP-CMP kinase; ploop, 94.2 0.022 7.7E-07 53.1 3.1 23 21-43 3-25 (196)
324 2z0h_A DTMP kinase, thymidylat 94.2 0.048 1.6E-06 50.8 5.4 21 23-43 2-22 (197)
325 3tau_A Guanylate kinase, GMP k 94.2 0.023 8E-07 53.7 3.1 24 20-43 7-30 (208)
326 1uj2_A Uridine-cytidine kinase 94.2 0.024 8.1E-07 55.5 3.2 25 19-43 20-44 (252)
327 2grj_A Dephospho-COA kinase; T 94.2 0.022 7.6E-07 52.8 2.8 24 20-43 11-34 (192)
328 3iij_A Coilin-interacting nucl 94.2 0.018 6.3E-07 52.9 2.3 24 20-43 10-33 (180)
329 2c95_A Adenylate kinase 1; tra 94.1 0.022 7.6E-07 53.1 2.8 23 21-43 9-31 (196)
330 2j37_W Signal recognition part 94.1 0.32 1.1E-05 52.3 12.0 40 19-60 99-138 (504)
331 1via_A Shikimate kinase; struc 94.1 0.022 7.4E-07 52.1 2.6 21 23-43 6-26 (175)
332 2pbr_A DTMP kinase, thymidylat 94.1 0.056 1.9E-06 50.3 5.5 21 23-43 2-22 (195)
333 4a74_A DNA repair and recombin 94.1 0.087 3E-06 50.5 7.1 43 20-62 24-70 (231)
334 1cke_A CK, MSSA, protein (cyti 94.0 0.026 8.9E-07 54.2 3.2 22 22-43 6-27 (227)
335 3tqc_A Pantothenate kinase; bi 94.0 0.047 1.6E-06 54.9 5.0 26 18-43 89-114 (321)
336 1nn5_A Similar to deoxythymidy 94.0 0.035 1.2E-06 52.7 3.9 23 21-43 9-31 (215)
337 2j41_A Guanylate kinase; GMP, 93.9 0.028 9.6E-07 53.0 3.2 22 22-43 7-28 (207)
338 2jaq_A Deoxyguanosine kinase; 93.9 0.025 8.6E-07 53.2 2.8 21 23-43 2-22 (205)
339 2f6r_A COA synthase, bifunctio 93.9 0.034 1.2E-06 55.2 3.9 24 19-42 73-96 (281)
340 2iyv_A Shikimate kinase, SK; t 93.9 0.02 6.7E-07 52.9 2.0 21 23-43 4-24 (184)
341 1qf9_A UMP/CMP kinase, protein 93.9 0.034 1.2E-06 51.7 3.7 23 21-43 6-28 (194)
342 3cf2_A TER ATPase, transitiona 93.9 0.11 3.9E-06 59.0 8.5 131 21-171 511-662 (806)
343 3cm0_A Adenylate kinase; ATP-b 93.9 0.032 1.1E-06 51.6 3.4 22 22-43 5-26 (186)
344 2qor_A Guanylate kinase; phosp 93.9 0.024 8.1E-07 53.4 2.5 24 20-43 11-34 (204)
345 1lvg_A Guanylate kinase, GMP k 93.9 0.022 7.6E-07 53.3 2.3 22 22-43 5-26 (198)
346 3a4m_A L-seryl-tRNA(SEC) kinas 93.9 0.032 1.1E-06 54.8 3.5 23 21-43 4-26 (260)
347 1e6c_A Shikimate kinase; phosp 93.9 0.02 6.8E-07 52.2 1.9 22 22-43 3-24 (173)
348 2yhs_A FTSY, cell division pro 93.8 0.093 3.2E-06 55.7 7.1 43 19-64 291-333 (503)
349 1htw_A HI0065; nucleotide-bind 93.8 0.036 1.2E-06 49.5 3.4 23 21-43 33-55 (158)
350 2bwj_A Adenylate kinase 5; pho 93.8 0.028 9.6E-07 52.6 2.9 23 21-43 12-34 (199)
351 2cdn_A Adenylate kinase; phosp 93.8 0.029 1E-06 52.6 3.0 24 20-43 19-42 (201)
352 2pt5_A Shikimate kinase, SK; a 93.8 0.028 9.5E-07 51.0 2.8 21 23-43 2-22 (168)
353 3end_A Light-independent proto 93.8 0.055 1.9E-06 54.7 5.3 44 18-63 38-81 (307)
354 3ney_A 55 kDa erythrocyte memb 93.8 0.029 1E-06 51.9 2.8 24 20-43 18-41 (197)
355 2jeo_A Uridine-cytidine kinase 93.8 0.036 1.2E-06 54.0 3.6 24 20-43 24-47 (245)
356 2r2a_A Uncharacterized protein 93.8 0.064 2.2E-06 49.9 5.1 19 23-41 7-25 (199)
357 2bbw_A Adenylate kinase 4, AK4 93.7 0.029 1E-06 54.6 3.0 23 21-43 27-49 (246)
358 3aez_A Pantothenate kinase; tr 93.7 0.037 1.3E-06 55.7 3.7 25 19-43 88-112 (312)
359 4e22_A Cytidylate kinase; P-lo 93.6 0.035 1.2E-06 54.2 3.2 22 22-43 28-49 (252)
360 1znw_A Guanylate kinase, GMP k 93.6 0.036 1.2E-06 52.3 3.2 22 22-43 21-42 (207)
361 1zu4_A FTSY; GTPase, signal re 93.5 0.061 2.1E-06 54.3 5.0 40 19-60 103-142 (320)
362 3zvl_A Bifunctional polynucleo 93.5 0.14 4.8E-06 54.1 8.0 25 19-43 256-280 (416)
363 1rj9_A FTSY, signal recognitio 93.5 0.045 1.5E-06 54.9 3.9 24 20-43 101-124 (304)
364 2ga8_A Hypothetical 39.9 kDa p 93.5 0.065 2.2E-06 54.2 5.0 25 19-43 22-46 (359)
365 2pez_A Bifunctional 3'-phospho 93.5 0.044 1.5E-06 50.3 3.5 23 21-43 5-27 (179)
366 1aky_A Adenylate kinase; ATP:A 93.5 0.032 1.1E-06 53.3 2.6 23 21-43 4-26 (220)
367 2j9r_A Thymidine kinase; TK1, 93.4 0.083 2.8E-06 49.2 5.2 110 21-141 28-139 (214)
368 1z6g_A Guanylate kinase; struc 93.4 0.03 1E-06 53.3 2.3 22 22-43 24-45 (218)
369 3hjn_A DTMP kinase, thymidylat 93.3 0.092 3.2E-06 48.8 5.5 48 24-73 3-50 (197)
370 2vli_A Antibiotic resistance p 93.3 0.029 9.9E-07 51.7 2.0 23 21-43 5-27 (183)
371 2ck3_D ATP synthase subunit be 93.3 0.24 8.2E-06 52.0 9.0 53 22-75 154-207 (482)
372 3tlx_A Adenylate kinase 2; str 93.3 0.034 1.2E-06 54.0 2.5 24 20-43 28-51 (243)
373 3upu_A ATP-dependent DNA helic 93.3 0.09 3.1E-06 56.5 6.1 21 23-43 47-67 (459)
374 1zd8_A GTP:AMP phosphotransfer 93.2 0.04 1.4E-06 52.8 2.9 24 20-43 6-29 (227)
375 1s96_A Guanylate kinase, GMP k 93.2 0.04 1.4E-06 52.3 2.8 23 21-43 16-38 (219)
376 3tif_A Uncharacterized ABC tra 93.2 0.064 2.2E-06 51.6 4.3 33 22-57 32-64 (235)
377 1vht_A Dephospho-COA kinase; s 93.2 0.053 1.8E-06 51.6 3.7 23 21-43 4-26 (218)
378 2onk_A Molybdate/tungstate ABC 93.2 0.059 2E-06 51.9 4.0 22 22-43 25-46 (240)
379 2pcj_A ABC transporter, lipopr 93.2 0.068 2.3E-06 51.0 4.4 22 22-43 31-52 (224)
380 2wwf_A Thymidilate kinase, put 93.2 0.042 1.4E-06 52.0 2.9 23 21-43 10-32 (212)
381 2wsm_A Hydrogenase expression/ 93.1 0.052 1.8E-06 51.8 3.6 24 20-43 29-52 (221)
382 3fb4_A Adenylate kinase; psych 93.1 0.042 1.4E-06 52.2 2.8 21 23-43 2-22 (216)
383 3l0o_A Transcription terminati 93.1 0.24 8.2E-06 50.4 8.3 22 22-43 176-197 (427)
384 3gfo_A Cobalt import ATP-bindi 93.1 0.067 2.3E-06 52.7 4.3 22 22-43 35-56 (275)
385 2v3c_C SRP54, signal recogniti 93.0 0.038 1.3E-06 58.3 2.7 40 19-60 97-136 (432)
386 3dl0_A Adenylate kinase; phosp 93.0 0.044 1.5E-06 52.1 2.8 21 23-43 2-22 (216)
387 2hf9_A Probable hydrogenase ni 93.0 0.067 2.3E-06 51.1 4.2 24 20-43 37-60 (226)
388 4akg_A Glutathione S-transfera 93.0 0.37 1.3E-05 62.2 11.8 139 22-170 1268-1431(2695)
389 1sq5_A Pantothenate kinase; P- 93.0 0.063 2.1E-06 54.2 4.0 24 20-43 79-102 (308)
390 1fx0_B ATP synthase beta chain 93.0 0.27 9.3E-06 51.9 8.9 52 22-74 166-218 (498)
391 3e1s_A Exodeoxyribonuclease V, 92.9 0.092 3.1E-06 57.9 5.6 106 22-140 205-316 (574)
392 4g1u_C Hemin import ATP-bindin 92.9 0.083 2.8E-06 51.8 4.6 22 22-43 38-59 (266)
393 1b0u_A Histidine permease; ABC 92.8 0.076 2.6E-06 52.0 4.3 22 22-43 33-54 (262)
394 2v54_A DTMP kinase, thymidylat 92.8 0.048 1.7E-06 51.2 2.8 22 22-43 5-26 (204)
395 2i3b_A HCR-ntpase, human cance 92.8 0.046 1.6E-06 50.5 2.5 21 23-43 3-23 (189)
396 2r8r_A Sensor protein; KDPD, P 92.8 0.12 4.2E-06 48.5 5.4 42 20-64 6-47 (228)
397 1zak_A Adenylate kinase; ATP:A 92.8 0.04 1.4E-06 52.6 2.2 23 21-43 5-27 (222)
398 3p32_A Probable GTPase RV1496/ 92.8 0.11 3.9E-06 53.5 5.8 25 19-43 77-101 (355)
399 2dr3_A UPF0273 protein PH0284; 92.8 0.075 2.6E-06 51.6 4.2 38 22-61 24-61 (247)
400 2ehv_A Hypothetical protein PH 92.7 0.055 1.9E-06 52.8 3.2 37 22-59 31-67 (251)
401 3a8t_A Adenylate isopentenyltr 92.7 0.06 2.1E-06 54.1 3.4 23 21-43 40-62 (339)
402 2f1r_A Molybdopterin-guanine d 92.7 0.033 1.1E-06 50.5 1.4 22 22-43 3-24 (171)
403 3nwj_A ATSK2; P loop, shikimat 92.7 0.042 1.5E-06 53.2 2.3 22 22-43 49-70 (250)
404 3ake_A Cytidylate kinase; CMP 92.7 0.057 2E-06 50.8 3.2 21 23-43 4-24 (208)
405 3lnc_A Guanylate kinase, GMP k 92.7 0.034 1.2E-06 53.5 1.6 22 22-43 28-50 (231)
406 3d3q_A TRNA delta(2)-isopenten 92.7 0.06 2.1E-06 54.3 3.4 22 22-43 8-29 (340)
407 1m7g_A Adenylylsulfate kinase; 92.7 0.069 2.4E-06 50.5 3.7 24 20-43 24-47 (211)
408 3cmu_A Protein RECA, recombina 92.7 0.14 4.6E-06 63.9 7.0 83 20-109 1426-1514(2050)
409 1cp2_A CP2, nitrogenase iron p 92.6 0.11 3.6E-06 51.4 5.1 39 22-62 2-40 (269)
410 3b9q_A Chloroplast SRP recepto 92.6 0.079 2.7E-06 53.1 4.2 25 19-43 98-122 (302)
411 1gtv_A TMK, thymidylate kinase 92.6 0.032 1.1E-06 53.0 1.2 21 23-43 2-22 (214)
412 3r20_A Cytidylate kinase; stru 92.6 0.062 2.1E-06 51.3 3.2 23 21-43 9-31 (233)
413 1sgw_A Putative ABC transporte 92.6 0.075 2.6E-06 50.1 3.7 22 22-43 36-57 (214)
414 2olj_A Amino acid ABC transpor 92.6 0.087 3E-06 51.5 4.3 22 22-43 51-72 (263)
415 1ji0_A ABC transporter; ATP bi 92.5 0.09 3.1E-06 50.7 4.3 22 22-43 33-54 (240)
416 2ff7_A Alpha-hemolysin translo 92.5 0.09 3.1E-06 51.0 4.3 22 22-43 36-57 (247)
417 1vpl_A ABC transporter, ATP-bi 92.5 0.09 3.1E-06 51.2 4.3 22 22-43 42-63 (256)
418 2eyu_A Twitching motility prot 92.5 0.08 2.7E-06 51.8 3.9 111 20-142 24-135 (261)
419 1g6h_A High-affinity branched- 92.5 0.091 3.1E-06 51.3 4.3 22 22-43 34-55 (257)
420 2ged_A SR-beta, signal recogni 92.4 0.089 3.1E-06 48.7 4.1 25 20-44 47-71 (193)
421 1q57_A DNA primase/helicase; d 92.4 0.35 1.2E-05 52.6 9.4 52 21-76 242-294 (503)
422 2afh_E Nitrogenase iron protei 92.4 0.11 3.8E-06 51.8 5.0 40 21-62 2-41 (289)
423 3be4_A Adenylate kinase; malar 92.4 0.05 1.7E-06 51.7 2.3 22 22-43 6-27 (217)
424 1yrb_A ATP(GTP)binding protein 92.4 0.084 2.9E-06 51.9 4.0 26 18-43 11-36 (262)
425 4eaq_A DTMP kinase, thymidylat 92.4 0.1 3.4E-06 50.0 4.4 24 20-43 25-48 (229)
426 1tue_A Replication protein E1; 92.4 0.042 1.4E-06 50.6 1.6 22 22-43 59-80 (212)
427 1np6_A Molybdopterin-guanine d 92.3 0.066 2.3E-06 48.6 2.8 24 20-43 5-28 (174)
428 3b5x_A Lipid A export ATP-bind 92.3 0.5 1.7E-05 52.3 10.6 22 22-43 370-391 (582)
429 2ixe_A Antigen peptide transpo 92.3 0.098 3.3E-06 51.5 4.3 22 22-43 46-67 (271)
430 2qi9_C Vitamin B12 import ATP- 92.3 0.11 3.6E-06 50.4 4.4 22 22-43 27-48 (249)
431 3b85_A Phosphate starvation-in 92.3 0.052 1.8E-06 51.0 2.1 22 22-43 23-44 (208)
432 1e4v_A Adenylate kinase; trans 92.2 0.066 2.3E-06 50.7 2.9 20 24-43 3-22 (214)
433 1a7j_A Phosphoribulokinase; tr 92.2 0.031 1E-06 55.8 0.5 24 20-43 4-27 (290)
434 3crm_A TRNA delta(2)-isopenten 92.2 0.07 2.4E-06 53.5 3.1 22 22-43 6-27 (323)
435 2yz2_A Putative ABC transporte 92.1 0.1 3.6E-06 51.2 4.3 22 22-43 34-55 (266)
436 1nlf_A Regulatory protein REPA 92.1 0.11 3.7E-06 51.6 4.5 22 22-43 31-52 (279)
437 4edh_A DTMP kinase, thymidylat 92.1 0.18 6.3E-06 47.4 5.8 22 22-43 7-28 (213)
438 1xx6_A Thymidine kinase; NESG, 92.1 0.039 1.3E-06 51.0 1.0 109 21-140 8-118 (191)
439 1mv5_A LMRA, multidrug resista 92.1 0.082 2.8E-06 51.2 3.4 22 22-43 29-50 (243)
440 2xb4_A Adenylate kinase; ATP-b 92.1 0.068 2.3E-06 51.0 2.8 21 23-43 2-22 (223)
441 2r6a_A DNAB helicase, replicat 92.1 0.25 8.4E-06 52.9 7.5 48 22-73 204-252 (454)
442 3bgw_A DNAB-like replicative h 92.0 0.51 1.7E-05 50.1 9.7 50 21-74 197-246 (444)
443 3exa_A TRNA delta(2)-isopenten 92.0 0.077 2.6E-06 52.6 3.1 23 21-43 3-25 (322)
444 3fkq_A NTRC-like two-domain pr 91.9 0.13 4.5E-06 53.4 5.0 45 18-64 140-185 (373)
445 2og2_A Putative signal recogni 91.9 0.11 3.6E-06 53.3 4.1 25 19-43 155-179 (359)
446 2ihy_A ABC transporter, ATP-bi 91.9 0.12 4E-06 51.2 4.3 22 22-43 48-69 (279)
447 2q6t_A DNAB replication FORK h 91.9 0.42 1.4E-05 51.0 9.0 51 22-76 201-252 (444)
448 3sr0_A Adenylate kinase; phosp 91.8 0.078 2.7E-06 49.7 2.8 21 23-43 2-22 (206)
449 2d2e_A SUFC protein; ABC-ATPas 91.8 0.085 2.9E-06 51.3 3.2 22 22-43 30-51 (250)
450 3vkw_A Replicase large subunit 91.8 0.29 9.8E-06 51.3 7.2 26 18-43 158-183 (446)
451 2qmh_A HPR kinase/phosphorylas 91.8 0.095 3.2E-06 48.0 3.2 23 22-44 35-57 (205)
452 2zu0_C Probable ATP-dependent 91.7 0.087 3E-06 51.8 3.2 22 22-43 47-68 (267)
453 1ak2_A Adenylate kinase isoenz 91.7 0.077 2.6E-06 51.1 2.8 23 21-43 16-38 (233)
454 2vp4_A Deoxynucleoside kinase; 91.7 0.095 3.3E-06 50.3 3.4 25 19-43 18-42 (230)
455 2ghi_A Transport protein; mult 91.6 0.091 3.1E-06 51.4 3.2 22 22-43 47-68 (260)
456 1q3t_A Cytidylate kinase; nucl 91.6 0.09 3.1E-06 50.7 3.1 25 19-43 14-38 (236)
457 3llm_A ATP-dependent RNA helic 91.5 0.32 1.1E-05 46.7 6.9 20 22-41 77-96 (235)
458 2nq2_C Hypothetical ABC transp 91.5 0.094 3.2E-06 51.0 3.1 22 22-43 32-53 (253)
459 1ltq_A Polynucleotide kinase; 91.5 0.099 3.4E-06 52.6 3.4 22 22-43 3-24 (301)
460 3foz_A TRNA delta(2)-isopenten 91.5 0.11 3.7E-06 51.5 3.5 24 20-43 9-32 (316)
461 4dzz_A Plasmid partitioning pr 91.4 0.14 4.8E-06 48.0 4.2 42 22-65 2-44 (206)
462 3io3_A DEHA2D07832P; chaperone 91.4 0.15 5.2E-06 52.0 4.6 43 20-64 17-61 (348)
463 2wji_A Ferrous iron transport 91.3 0.14 4.6E-06 46.1 3.8 23 22-44 4-26 (165)
464 3iqw_A Tail-anchored protein t 91.3 0.17 5.9E-06 51.3 4.9 44 20-65 15-58 (334)
465 2zej_A Dardarin, leucine-rich 91.2 0.1 3.5E-06 47.9 3.0 20 24-43 5-24 (184)
466 1oix_A RAS-related protein RAB 91.2 0.14 4.7E-06 47.4 3.8 24 21-44 29-52 (191)
467 2v9p_A Replication protein E1; 91.2 0.11 3.6E-06 51.9 3.1 23 21-43 126-148 (305)
468 2p67_A LAO/AO transport system 91.0 0.26 9E-06 50.4 6.0 25 19-43 54-78 (341)
469 2ocp_A DGK, deoxyguanosine kin 90.9 0.12 4.2E-06 49.9 3.3 23 21-43 2-24 (241)
470 1svm_A Large T antigen; AAA+ f 90.9 0.15 5E-06 52.7 3.9 24 20-43 168-191 (377)
471 3nh6_A ATP-binding cassette SU 90.8 0.13 4.4E-06 51.4 3.4 22 22-43 81-102 (306)
472 2r9v_A ATP synthase subunit al 90.8 0.21 7.3E-06 52.8 5.0 84 22-109 176-276 (515)
473 3lv8_A DTMP kinase, thymidylat 90.7 0.26 8.8E-06 47.1 5.3 22 22-43 28-49 (236)
474 2orv_A Thymidine kinase; TP4A 90.7 0.33 1.1E-05 45.7 5.8 104 21-140 19-126 (234)
475 2pjz_A Hypothetical protein ST 90.7 0.13 4.4E-06 50.3 3.2 21 23-43 32-52 (263)
476 3fvq_A Fe(3+) IONS import ATP- 90.7 0.18 6.3E-06 51.4 4.4 22 22-43 31-52 (359)
477 3cmu_A Protein RECA, recombina 90.7 0.35 1.2E-05 60.3 7.6 84 20-110 382-471 (2050)
478 2f9l_A RAB11B, member RAS onco 90.6 0.13 4.5E-06 47.9 3.1 24 21-44 5-28 (199)
479 3ld9_A DTMP kinase, thymidylat 90.6 0.22 7.5E-06 47.1 4.6 25 19-43 19-43 (223)
480 1u0j_A DNA replication protein 90.6 0.2 6.9E-06 48.5 4.4 23 21-43 104-126 (267)
481 3sop_A Neuronal-specific septi 90.6 0.13 4.6E-06 50.5 3.2 21 23-43 4-24 (270)
482 2dyk_A GTP-binding protein; GT 90.6 0.15 5.3E-06 45.3 3.4 23 22-44 2-24 (161)
483 3kjh_A CO dehydrogenase/acetyl 90.5 0.2 6.8E-06 48.7 4.4 41 24-66 3-43 (254)
484 3v9p_A DTMP kinase, thymidylat 90.4 0.2 6.7E-06 47.7 4.1 22 22-43 26-47 (227)
485 4tmk_A Protein (thymidylate ki 90.4 0.31 1.1E-05 45.8 5.4 22 22-43 4-25 (213)
486 1tq4_A IIGP1, interferon-induc 90.4 0.13 4.5E-06 53.7 3.1 24 20-43 68-91 (413)
487 3vr4_D V-type sodium ATPase su 90.4 0.19 6.6E-06 52.4 4.3 85 23-109 153-257 (465)
488 3fdi_A Uncharacterized protein 90.4 0.12 4.2E-06 48.2 2.6 22 22-43 7-28 (201)
489 3kta_A Chromosome segregation 90.4 0.15 5.2E-06 46.6 3.3 22 22-43 27-48 (182)
490 3hws_A ATP-dependent CLP prote 90.4 0.1 3.5E-06 54.1 2.3 23 21-43 51-73 (363)
491 2qe7_A ATP synthase subunit al 90.3 0.22 7.6E-06 52.6 4.7 84 22-109 163-263 (502)
492 2bbs_A Cystic fibrosis transme 90.3 0.15 5E-06 50.7 3.3 23 22-44 65-87 (290)
493 3cwq_A Para family chromosome 90.3 0.26 8.8E-06 46.4 4.8 41 23-66 2-43 (209)
494 3tui_C Methionine import ATP-b 90.3 0.2 6.9E-06 51.1 4.3 22 22-43 55-76 (366)
495 2wjg_A FEOB, ferrous iron tran 90.2 0.19 6.4E-06 46.2 3.8 24 21-44 7-30 (188)
496 1w36_D RECD, exodeoxyribonucle 90.2 0.17 5.8E-06 56.3 4.0 22 22-43 165-186 (608)
497 1nij_A Hypothetical protein YJ 90.1 0.14 5E-06 51.7 3.1 24 20-43 3-26 (318)
498 3oaa_A ATP synthase subunit al 90.1 0.45 1.5E-05 50.2 6.8 84 22-109 163-263 (513)
499 3eph_A TRNA isopentenyltransfe 90.0 0.17 5.8E-06 52.2 3.5 22 22-43 3-24 (409)
500 3ea0_A ATPase, para family; al 90.0 0.31 1.1E-05 47.1 5.3 41 20-62 3-45 (245)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.2e-44 Score=399.47 Aligned_cols=310 Identities=20% Similarity=0.256 Sum_probs=244.6
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhC--CccccccCCeEEEEEecCCC--CHHHHHHHHHHHhc
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYN--DKDVIENFDKRIWVCVSDPF--DEFRIAKAIIEGLE 77 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~--~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i~~~l~ 77 (794)
++++|.++|... ...++++|+|+||||+||||||+++|+ +.++..+|++++||++++.+ +...+++.|+.+++
T Consensus 136 ~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~ 212 (549)
T 2a5y_B 136 HVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLK 212 (549)
T ss_dssp HHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc---cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHh
Confidence 678899998653 234689999999999999999999997 56888999999999999875 78999999999997
Q ss_pred CCCC-------CCCCHHHHHHHHHhHcCCc-eEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhhccc-c
Q 045633 78 GSLP-------NLGELNSLLEYIHTSIKGK-KFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVARMME-S 148 (794)
Q Consensus 78 ~~~~-------~~~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~-~ 148 (794)
.... +..+.+.+...+++.++++ |+||||||||+.+...|.. .+||+||||||++.++..++ .
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 213 SEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp TTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGGGCCSC
T ss_pred cCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHHHcCCC
Confidence 6521 1224566788999999996 9999999998743222221 16999999999999988765 4
Q ss_pred cceEEccCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCCCHHHHHHHHhhhhcccc
Q 045633 149 TDVISIKELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWQLILNSEMWQLE 228 (794)
Q Consensus 149 ~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~~ 228 (794)
..+|+|++|+.+||++||.++++.... .+...+++.+|+++|+|+||||+++|+.++.+ . ..|...+.+.....
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~~~- 358 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLESR- 358 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHHHH-
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHhhcc-
Confidence 468999999999999999999876532 35778899999999999999999999999754 2 23333333322211
Q ss_pred hhcccchhHHHhhhcCCChHHHhhhh-----------hcccCCCCcccChhHHHHHHHHc--CCccccC-CcchhhhhhH
Q 045633 229 DFEKNLLAPLQLSYNDLPPEIKRCFL-----------YCVVFPKDYDLDKGELVRLWMAQ--GYIEKKG-NIEMEMTGGW 294 (794)
Q Consensus 229 ~~~~~~~~~l~~sy~~L~~~~k~~fl-----------~la~fp~~~~i~~~~li~~w~~~--g~~~~~~-~~~~~~~~~~ 294 (794)
....+..++.+||+.||++.|.||+ |||+||+++.++ ++.|+++ ||+.... +...+++++
T Consensus 359 -~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~- 432 (549)
T 2a5y_B 359 -GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD- 432 (549)
T ss_dssp -CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-
T ss_pred -cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-
Confidence 2356889999999999999999999 999999999998 7899999 9998765 556777777
Q ss_pred HHHHHHhccCcccccCCCCCeEEEEeehHHHHHHHHhccccc
Q 045633 295 YFDFLASRSFFQDFDEDEEGIVTCKMHDIVHDFAQYLTRKEF 336 (794)
Q Consensus 295 ~l~~L~~~sll~~~~~~~~~~~~~~~h~li~~~~~~~~~~~~ 336 (794)
++++|++++|++....+ ...+|+|||++|++++.++..++
T Consensus 433 ~l~~L~~rsLl~~~~~~--~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRM--PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHTTTBSSCSEEECS--SSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHHHcCCeeEecCC--CceEEEeChHHHHHHHHHHHHHH
Confidence 99999999999976543 23469999999999998876553
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.7e-36 Score=339.94 Aligned_cols=278 Identities=19% Similarity=0.215 Sum_probs=215.6
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCe-EEEEEecCCCCHHHHHHHHHHHhcCCC
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDK-RIWVCVSDPFDEFRIAKAIIEGLEGSL 80 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~-~~~v~~~~~~~~~~~~~~i~~~l~~~~ 80 (794)
+.++|.++|... ++.++|+|+||||+||||||+++|++.++..+|+. ++|+++++.++...++..++..+....
T Consensus 136 eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~ 210 (1221)
T 1vt4_I 136 PYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210 (1221)
T ss_dssp HHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcC
Confidence 567788887753 24789999999999999999999986678889975 999999999888888888777543211
Q ss_pred ---C---C-----CCCHHHHHHHHHhHc---CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhhcc
Q 045633 81 ---P---N-----LGELNSLLEYIHTSI---KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVARMM 146 (794)
Q Consensus 81 ---~---~-----~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 146 (794)
. + ..+.+.....+++.+ .++|+||||||+|+ ...|+.+ + +||+||||||++.++..+
T Consensus 211 ~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp SSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSCSHHHHHH
T ss_pred cccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccChHHHHhc
Confidence 0 0 012344556666655 78999999999987 3445543 2 589999999999988654
Q ss_pred cccceEEcc------CCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCC-CHHHHHHH
Q 045633 147 ESTDVISIK------ELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKK-TREEWQLI 219 (794)
Q Consensus 147 ~~~~~~~l~------~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~-~~~~w~~~ 219 (794)
.....+.|+ +|+.+||++||.+.. +... .++..++ |+|+||||+++|++|+.+. ..+.|...
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~ 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC
Confidence 444456666 899999999999884 2221 1223333 9999999999999998664 67888753
Q ss_pred HhhhhcccchhcccchhHHHhhhcCCChHH-HhhhhhcccCCCCcccChhHHHHHHHHcCCccccCCcchhhhhhHHHHH
Q 045633 220 LNSEMWQLEDFEKNLLAPLQLSYNDLPPEI-KRCFLYCVVFPKDYDLDKGELVRLWMAQGYIEKKGNIEMEMTGGWYFDF 298 (794)
Q Consensus 220 l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~~fl~la~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~l~~ 298 (794)
....+..+|++||+.|+++. |.||++||+||+++.|+...++..|+++| ++.+..++++
T Consensus 351 ----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~e 410 (1221)
T 1vt4_I 351 ----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNK 410 (1221)
T ss_dssp ----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHH
T ss_pred ----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHH
Confidence 13569999999999999999 99999999999999999999999998776 1246778999
Q ss_pred HHhccCcccccCCCCCeEEEEeehHHHHHH
Q 045633 299 LASRSFFQDFDEDEEGIVTCKMHDIVHDFA 328 (794)
Q Consensus 299 L~~~sll~~~~~~~~~~~~~~~h~li~~~~ 328 (794)
|+++||++.... ...|+||++++++.
T Consensus 411 LvdRSLLq~d~~----~~rYrMHDLllELr 436 (1221)
T 1vt4_I 411 LHKYSLVEKQPK----ESTISIPSIYLELK 436 (1221)
T ss_dssp HHTSSSSSBCSS----SSEEBCCCHHHHHH
T ss_pred HHhhCCEEEeCC----CCEEEehHHHHHHh
Confidence 999999997422 12699999998855
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.2e-33 Score=349.37 Aligned_cols=301 Identities=21% Similarity=0.268 Sum_probs=234.2
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccc-cccC-CeEEEEEecCCCC--HHHHHHHHHHHhc
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDV-IENF-DKRIWVCVSDPFD--EFRIAKAIIEGLE 77 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~~~f-~~~~~v~~~~~~~--~~~~~~~i~~~l~ 77 (794)
++++|.++|.... .++++|+|+||||+||||||+++|++.+. ..+| +.++||++++... ....+..++..+.
T Consensus 132 ~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~ 207 (1249)
T 3sfz_A 132 LVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLD 207 (1249)
T ss_dssp HHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhh
Confidence 5677888886543 37899999999999999999999996433 4445 6788999987543 3344666777765
Q ss_pred CCC----CCCCCHHHHHHHHHhHcCCc--eEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhhc-ccccc
Q 045633 78 GSL----PNLGELNSLLEYIHTSIKGK--KFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVARM-MESTD 150 (794)
Q Consensus 78 ~~~----~~~~~~~~~~~~l~~~l~~~--~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~-~~~~~ 150 (794)
... ....+.+.+...++..+.++ |+||||||+|+. .+|.. ..+|++||||||++.++.. +....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~~~~~~~~~~~~ 278 (1249)
T 3sfz_A 208 QEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDKSVTDSVMGPKH 278 (1249)
T ss_dssp TTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESSTTTTTTCCSCBC
T ss_pred hhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCHHHHHhhcCCce
Confidence 432 22346778888899999877 999999999763 23332 3578999999999998854 45567
Q ss_pred eEEccC-CChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCCCHHHHHHHHhhhhcccc-
Q 045633 151 VISIKE-LSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWQLILNSEMWQLE- 228 (794)
Q Consensus 151 ~~~l~~-l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~~- 228 (794)
.+.+++ |+.+||++||...++... +...+.+++|+++|+|+||||+++|++|+.+. ..|...+........
T Consensus 279 ~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~ 351 (1249)
T 3sfz_A 279 VVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFK 351 (1249)
T ss_dssp CEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCC
T ss_pred EEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhh
Confidence 899996 999999999998885432 22345688999999999999999999997654 357766665432211
Q ss_pred -------hhcccchhHHHhhhcCCChHHHhhhhhcccCCCCcccChhHHHHHHHHcCCccccCCcchhhhhhHHHHHHHh
Q 045633 229 -------DFEKNLLAPLQLSYNDLPPEIKRCFLYCVVFPKDYDLDKGELVRLWMAQGYIEKKGNIEMEMTGGWYFDFLAS 301 (794)
Q Consensus 229 -------~~~~~~~~~l~~sy~~L~~~~k~~fl~la~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~ 301 (794)
.....+..+|++||+.|++++|.||+|||+||+++.++...++..|.++ ++.++.++++|++
T Consensus 352 ~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~ 420 (1249)
T 3sfz_A 352 RIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVN 420 (1249)
T ss_dssp CSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHh
Confidence 1124699999999999999999999999999999999999999999543 4567888999999
Q ss_pred ccCcccccCCCCCeEEEEeehHHHHHHHHhcccc
Q 045633 302 RSFFQDFDEDEEGIVTCKMHDIVHDFAQYLTRKE 335 (794)
Q Consensus 302 ~sll~~~~~~~~~~~~~~~h~li~~~~~~~~~~~ 335 (794)
++|++.... +....|+||+++|++++....++
T Consensus 421 ~sl~~~~~~--~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 421 KSLLFCNRN--GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TTSCEEEES--SSSEEEECCHHHHHHHHHHTGGG
T ss_pred ccceEEecC--CCceEEEecHHHHHHHHhhhhHH
Confidence 999986544 34457999999999998876554
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=1.6e-31 Score=303.97 Aligned_cols=295 Identities=21% Similarity=0.266 Sum_probs=219.5
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccc-cccC-CeEEEEEecCCCCHHHHHHHH---HHHh
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDV-IENF-DKRIWVCVSDPFDEFRIAKAI---IEGL 76 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~~~f-~~~~~v~~~~~~~~~~~~~~i---~~~l 76 (794)
+.++|.++|.... ++.++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +...+...+ +..+
T Consensus 132 ~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l 206 (591)
T 1z6t_A 132 LVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRL 206 (591)
T ss_dssp HHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHh
Confidence 4566777776432 36899999999999999999999997555 7789 58999999865 333333333 3444
Q ss_pred cCC----CCCCCCHHHHHHHHHhHcCC--ceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhhcccccc
Q 045633 77 EGS----LPNLGELNSLLEYIHTSIKG--KKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVARMMESTD 150 (794)
Q Consensus 77 ~~~----~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~ 150 (794)
+.. .....+.+.....+...+.+ +++||||||+|+. ..+. ...+|++||||||++.++..+. ..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~-------~l~~~~~ilvTsR~~~~~~~~~-~~ 276 (591)
T 1z6t_A 207 DQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK-------AFDSQCQILLTTRDKSVTDSVM-GP 276 (591)
T ss_dssp CSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH-------TTCSSCEEEEEESCGGGGTTCC-SC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH-------HhcCCCeEEEECCCcHHHHhcC-CC
Confidence 421 12234566777778877765 7899999999762 2222 2356899999999998876543 23
Q ss_pred eEEc---cCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCCCHHHHHHHHhhhhccc
Q 045633 151 VISI---KELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWQLILNSEMWQL 227 (794)
Q Consensus 151 ~~~l---~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~~~~~~ 227 (794)
.+++ ++|+.+||++||...++... ....+.+.+|+++|+|+|+||+++|++++... ..|...+.......
T Consensus 277 ~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~ 349 (591)
T 1z6t_A 277 KYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQ 349 (591)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCC
T ss_pred ceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhH
Confidence 4454 58999999999999886421 22245688999999999999999999997553 35777666543221
Q ss_pred --------chhcccchhHHHhhhcCCChHHHhhhhhcccCCCCcccChhHHHHHHHHcCCccccCCcchhhhhhHHHHHH
Q 045633 228 --------EDFEKNLLAPLQLSYNDLPPEIKRCFLYCVVFPKDYDLDKGELVRLWMAQGYIEKKGNIEMEMTGGWYFDFL 299 (794)
Q Consensus 228 --------~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~l~~L 299 (794)
.....++..++..||+.|+++.|.||+++|+||+++.++...+...|.++ .+.+..+++.|
T Consensus 350 ~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L 418 (591)
T 1z6t_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEF 418 (591)
T ss_dssp CCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHH
T ss_pred HHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHH
Confidence 11235789999999999999999999999999999999999899888432 23467789999
Q ss_pred HhccCcccccCCCCCeEEEEeehHHHHHHHHh
Q 045633 300 ASRSFFQDFDEDEEGIVTCKMHDIVHDFAQYL 331 (794)
Q Consensus 300 ~~~sll~~~~~~~~~~~~~~~h~li~~~~~~~ 331 (794)
++++|+..... +....|+||++++++++..
T Consensus 419 ~~~~Ll~~~~~--~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 419 VNKSLLFCDRN--GKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHTTSSEEEEE--TTEEEEECCHHHHHHHHHH
T ss_pred HhCcCeEEecC--CCccEEEEcHHHHHHHHhh
Confidence 99999986543 3345799999999999876
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.5e-25 Score=256.25 Aligned_cols=140 Identities=17% Similarity=0.172 Sum_probs=108.6
Q ss_pred ccccCcceEEEEEecccccCcc-cccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-Cc
Q 045633 352 STCQEKLRHLTLMLGLRAKFPV-SIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PR 429 (794)
Q Consensus 352 ~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~ 429 (794)
...+..++.+.+..+.....++ .+..+++|++|+++++. +....+..|.++++|++|++++|. +..+ |.
T Consensus 28 ~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~i~~~~~~~l~~L~~L~Ls~n~----l~~~~p~ 98 (606)
T 3vq2_A 28 DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-----IETIEDKAWHGLHHLSNLILTGNP----IQSFSPG 98 (606)
T ss_dssp TTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCC----CCCCCTT
T ss_pred CCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-----ccccCHHHhhchhhcCEeECCCCc----ccccChh
Confidence 3456788999998888777555 67889999999998883 334446668889999999999998 5555 78
Q ss_pred cccCccCCcEEeccC--CCccC-ccccCCCccceec--CcCCC--ccCcccccccCCceeEecccccccCC-CCCCCCC
Q 045633 430 GLENLIHLRYLQLSS--VEELP-ETCCELLNLQTLD--CLSLK--RLPQGIGKLINLRHLIFDVFGVDYVP-NGFERLT 500 (794)
Q Consensus 430 ~i~~l~~L~~L~L~~--~~~lp-~~i~~L~~L~~L~--~~~l~--~lp~~~~~L~~L~~L~l~~~~l~~lp-~~i~~l~ 500 (794)
.|+++++|++|++++ +..+| ..++++.+|++|+ .+.+. .+|..++++++|++|+++.|.+..++ ..++.++
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 899999999999988 77776 5788999999998 45565 47888999999999999888777654 3344333
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=4.7e-26 Score=266.36 Aligned_cols=278 Identities=22% Similarity=0.232 Sum_probs=172.2
Q ss_pred cCcceEEEEEecccc-cCcccccC-CCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCcc-c
Q 045633 355 QEKLRHLTLMLGLRA-KFPVSIFD-AKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRG-L 431 (794)
Q Consensus 355 ~~~~r~l~l~~~~~~-~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~-i 431 (794)
...++.|.+..+... .+|..+.. +++|++|+++++ ......+..|..+++|++|++++|.+ ...+|.. +
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-----~l~~~~p~~~~~l~~L~~L~L~~n~l---~~~ip~~~l 339 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-----HFYGAVPPFFGSCSLLESLALSSNNF---SGELPMDTL 339 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-----EEEECCCGGGGGCTTCCEEECCSSEE---EEECCHHHH
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-----cCCCccchHHhcCCCccEEECCCCcc---cCcCCHHHH
Confidence 445666666665554 34554444 366777776666 22333445566677777777777662 2255654 6
Q ss_pred cCccCCcEEeccC--CC-ccCccccCCC-ccceec--CcCCC-ccCccccc--ccCCceeEecccccc-cCCCCCCCCCC
Q 045633 432 ENLIHLRYLQLSS--VE-ELPETCCELL-NLQTLD--CLSLK-RLPQGIGK--LINLRHLIFDVFGVD-YVPNGFERLTG 501 (794)
Q Consensus 432 ~~l~~L~~L~L~~--~~-~lp~~i~~L~-~L~~L~--~~~l~-~lp~~~~~--L~~L~~L~l~~~~l~-~lp~~i~~l~~ 501 (794)
+++++|++|++++ +. .+|..+.++. +|++|+ .+.+. .+|..+.. +++|++|+++.|.+. .+|..++++++
T Consensus 340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 419 (768)
T 3rgz_A 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419 (768)
T ss_dssp TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT
T ss_pred hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC
Confidence 6677777777766 33 6666666665 666666 22232 34544544 666777777666665 56667777777
Q ss_pred CCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccc
Q 045633 502 LRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAP 581 (794)
Q Consensus 502 L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p 581 (794)
|+.|++..+.. .+ .....+.++++|+ .+.+....-. ......+..+++|+.|++++|...
T Consensus 420 L~~L~Ls~N~l-~~------~~p~~l~~l~~L~-~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~-------- 479 (768)
T 3rgz_A 420 LVSLHLSFNYL-SG------TIPSSLGSLSKLR-DLKLWLNMLE----GEIPQELMYVKTLETLILDFNDLT-------- 479 (768)
T ss_dssp CCEEECCSSEE-ES------CCCGGGGGCTTCC-EEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCC--------
T ss_pred CCEEECcCCcc-cC------cccHHHhcCCCCC-EEECCCCccc----CcCCHHHcCCCCceEEEecCCccc--------
Confidence 77776543321 11 1112234445555 5555433211 122334566778888888887654
Q ss_pred cccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeec
Q 045633 582 MWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIA 660 (794)
Q Consensus 582 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~ 660 (794)
...+..+..+++|+.|++++|.....+ |.++..+++|+.|+|++|.....+|. ++.+++|+.|+++
T Consensus 480 -----------~~~p~~l~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 480 -----------GEIPSGLSNCTNLNWISLSNNRLTGEI--PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp -----------SCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred -----------CcCCHHHhcCCCCCEEEccCCccCCcC--ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 122345667888999999988877443 88889999999999999976656665 8888999999998
Q ss_pred ccccceEeCcccc
Q 045633 661 EMVSVKKVGDEFL 673 (794)
Q Consensus 661 ~~~~l~~~~~~~~ 673 (794)
+|.....+|..+.
T Consensus 547 ~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 547 TNLFNGTIPAAMF 559 (768)
T ss_dssp SSEEESBCCGGGG
T ss_pred CCccCCcCChHHh
Confidence 8765556665543
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=2e-25 Score=254.90 Aligned_cols=373 Identities=15% Similarity=0.157 Sum_probs=241.7
Q ss_pred CcceEEEEEecccc-cCcccccCCCCccEEEEcccCc------c------------------------------------
Q 045633 356 EKLRHLTLMLGLRA-KFPVSIFDAKKLRSLILFDVTE------D------------------------------------ 392 (794)
Q Consensus 356 ~~~r~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~------~------------------------------------ 392 (794)
.+++.+++..+... .+|+.+..+++|++|+++++.. .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 36777777766553 4788899999999999988832 0
Q ss_pred -------------------------------hhhhhhhhHHHhccCCccceEEEcccCCCccccc---------------
Q 045633 393 -------------------------------QSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIE--------------- 426 (794)
Q Consensus 393 -------------------------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------- 426 (794)
.+.+.. +|..+.++++|++|+|++|. +..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~----l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP----FVAENICEAWENENSEYA 235 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC----CCGGGBSSSCSCTTSHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCc----cccccccccccccccchh
Confidence 001222 56678999999999999999 545
Q ss_pred ---cCcccc--CccCCcEEeccC---CCccCccccCCCccceec--CcC-CC--ccCcccccc------cCCceeEeccc
Q 045633 427 ---IPRGLE--NLIHLRYLQLSS---VEELPETCCELLNLQTLD--CLS-LK--RLPQGIGKL------INLRHLIFDVF 487 (794)
Q Consensus 427 ---lp~~i~--~l~~L~~L~L~~---~~~lp~~i~~L~~L~~L~--~~~-l~--~lp~~~~~L------~~L~~L~l~~~ 487 (794)
+|+.++ ++++|++|+|++ ...+|..+++|.+|++|+ .+. +. .+|..++.| ++|++|+++.|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 999999 999999999998 678999999999999999 444 66 489888887 99999999999
Q ss_pred ccccCCC--CCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCC-Cce
Q 045633 488 GVDYVPN--GFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKN-LVH 564 (794)
Q Consensus 488 ~l~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~ 564 (794)
.+..+|. .++++++|+.|++..+.. .+ .+..+..+++|+ .+.+.... .. .....+..+++ |+.
T Consensus 316 ~l~~ip~~~~l~~l~~L~~L~L~~N~l-~g-------~ip~~~~l~~L~-~L~L~~N~----l~-~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 316 NLKTFPVETSLQKMKKLGMLECLYNQL-EG-------KLPAFGSEIKLA-SLNLAYNQ----IT-EIPANFCGFTEQVEN 381 (636)
T ss_dssp CCSSCCCHHHHTTCTTCCEEECCSCCC-EE-------ECCCCEEEEEES-EEECCSSE----EE-ECCTTSEEECTTCCE
T ss_pred cCCccCchhhhccCCCCCEEeCcCCcC-cc-------chhhhCCCCCCC-EEECCCCc----cc-cccHhhhhhcccCcE
Confidence 9999998 899999999998644321 11 111334444444 55443221 11 22334566677 888
Q ss_pred EEEEecCCCCccccccccccCcch-----------hHHHHHHhhhCC-------CCCCccEEEEeecCCCccCCCCch-h
Q 045633 565 LILDFTKREDEDYEEAPMWMNEEN-----------EAKQEAICEALQ-------APPNIESLNITGFEGRRLIFSSNW-T 625 (794)
Q Consensus 565 L~l~~~~~~~~~~~~~p~~~~~~~-----------~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~p~~-~ 625 (794)
|++++|... .+|.++.... .......+..+. .+++|+.|++++|....+ |.. +
T Consensus 382 L~Ls~N~l~-----~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l---p~~~~ 453 (636)
T 4eco_A 382 LSFAHNKLK-----YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF---PKELF 453 (636)
T ss_dssp EECCSSCCS-----SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC---CTHHH
T ss_pred EEccCCcCc-----ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC---CHHHH
Confidence 888877644 3343322100 000011122333 456777788877776655 544 3
Q ss_pred ccccCccEEeecCCCCCCcCCC--CC-------CCCCcceeeecccccceEeCcccc--cCcccCCCcccccc---CCCc
Q 045633 626 ASLDKLKRLDLAFCPRCEIMPP--LG-------KLPSLEILRIAEMVSVKKVGDEFL--GIGIRDHNHIHGTF---SSSS 691 (794)
Q Consensus 626 ~~l~~L~~L~L~~~~~l~~l~~--l~-------~L~~L~~L~l~~~~~l~~~~~~~~--~~~~l~~~~l~~~~---~~~~ 691 (794)
..+++|+.|+|++|.. ..+|. +. ++++|+.|++++|. ++.+|..+. ....++.++++++. .+..
T Consensus 454 ~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~ 531 (636)
T 4eco_A 454 STGSPLSSINLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ 531 (636)
T ss_dssp HTTCCCSEEECCSSCC-SBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCG
T ss_pred ccCCCCCEEECCCCCC-CCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChh
Confidence 4577888888887743 35554 22 22378888887654 556776665 55566666555421 2334
Q ss_pred cccCCccceeecccccccc---ccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCccc
Q 045633 692 VVAFPKLEKLDLWIMLQLE---EWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPIV 760 (794)
Q Consensus 692 ~~~~~~L~~L~l~~~~~l~---~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~l 760 (794)
+..+++|+.|+++++..+. -....+..+..+++|+.|++++| .++.+|..+. ++|++|++++|+..
T Consensus 532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCTTC
T ss_pred hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCCCc
Confidence 5667777777775432110 01112334556777777777777 4577777653 67777777777653
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=1.4e-24 Score=248.24 Aligned_cols=420 Identities=13% Similarity=0.095 Sum_probs=230.7
Q ss_pred cccccCcceEEEEEecccccC-cccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-C
Q 045633 351 TSTCQEKLRHLTLMLGLRAKF-PVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-P 428 (794)
Q Consensus 351 ~~~~~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p 428 (794)
+...+..++.|++.++.+..+ +..+..+++|++|+++++. +....+..|.++++|++|++++|. +..+ |
T Consensus 28 P~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~ 98 (606)
T 3t6q_A 28 PGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-----IYWIHEDTFQSQHRLDTLVLTANP----LIFMAE 98 (606)
T ss_dssp CTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCC----CSEECT
T ss_pred cCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc-----cceeChhhccCccccCeeeCCCCc----ccccCh
Confidence 344567889999999888775 5578889999999999883 344456678899999999999998 5444 7
Q ss_pred ccccCccCCcEEeccC--CCcc-CccccCCCccceec--CcCCCccC-cccccccCCceeEecccccccCC-CCCCCCCC
Q 045633 429 RGLENLIHLRYLQLSS--VEEL-PETCCELLNLQTLD--CLSLKRLP-QGIGKLINLRHLIFDVFGVDYVP-NGFERLTG 501 (794)
Q Consensus 429 ~~i~~l~~L~~L~L~~--~~~l-p~~i~~L~~L~~L~--~~~l~~lp-~~~~~L~~L~~L~l~~~~l~~lp-~~i~~l~~ 501 (794)
..++++++|++|++++ +..+ |..++++.+|++|+ .+.+..++ ..+..+++|++|+++.|.+..++ ..++.+++
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcc
Confidence 7889999999999998 7776 56788999999998 55666652 23445888899988888887764 44667777
Q ss_pred CC--ccCceEec--cccCCCC-----------------------------------------------------------
Q 045633 502 LR--TLSGFTVA--RVDGEYS----------------------------------------------------------- 518 (794)
Q Consensus 502 L~--~L~~~~~~--~~~~~~~----------------------------------------------------------- 518 (794)
|+ .|++.... .......
T Consensus 179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 76 33321110 0000000
Q ss_pred -----CCccC--cccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCc---cccccccccCc--
Q 045633 519 -----SKACN--LEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDE---DYEEAPMWMNE-- 586 (794)
Q Consensus 519 -----~~~~~--l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~p~~~~~-- 586 (794)
..... -..+..+++|+ .+++.+.. .. .....+..+++|+.|++++|..... .+..+|.....
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~-l~----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQ-ELDLTATH-LS----ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCS-EEECTTSC-CS----CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred EEeecCccCccCHHHhccccCCC-EEeccCCc-cC----CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 00000 01133455565 66665432 11 1233456677888888877765421 01111110000
Q ss_pred chhHHHHHH-hhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeeccccc
Q 045633 587 ENEAKQEAI-CEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMVS 664 (794)
Q Consensus 587 ~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~~ 664 (794)
......... ...+..+++|+.|++++|........|..+..+++|+.|++++|......|. ++.+++|+.|+++++..
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 000000000 1123444555555555554433311123344555555555555533222222 45555555555555432
Q ss_pred ceEeCcc-cccCcccCCCccccc----cCCCccccCCccceeecccccccccc-ccCCCCccCCCcccEEeeccCccCcC
Q 045633 665 VKKVGDE-FLGIGIRDHNHIHGT----FSSSSVVAFPKLEKLDLWIMLQLEEW-DFGKEDITIMPQIKSLMIFSCEKLKS 738 (794)
Q Consensus 665 l~~~~~~-~~~~~~l~~~~l~~~----~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~l~~L~~L~l~~c~~l~~ 738 (794)
....+.. +.....++.+++.+. ..+..+..+++|++|+++++ .+... ...+..+..+++|+.|++++|.....
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCccCcc
Confidence 2222222 333344444444432 12223455666666666664 22221 11123355677778888877743333
Q ss_pred CCcCccCCCCccEEEeccCccccccccccCCCCCccccccceeeeccccccCCC
Q 045633 739 LPDQLLRSTTLESLEIGEAPIVEQNFKKDTGKDWSKISHIPNILISGRYEQGGP 792 (794)
Q Consensus 739 ip~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 792 (794)
.|..+..+++|++|++++|..-... .+.+..+..+ .+.+.+|.+.+.|
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSS-----IEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGG-----GGGGTTCCSC-EEECCSSCCCCCC
T ss_pred ChhhhccccCCCEEECCCCccCcCC-----hhHhCccccc-EEECcCCcccccC
Confidence 4566777778888888777542211 1233445555 5555666655544
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=7.6e-25 Score=256.15 Aligned_cols=313 Identities=19% Similarity=0.137 Sum_probs=174.0
Q ss_pred ccCcceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccC
Q 045633 354 CQEKLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLEN 433 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~ 433 (794)
...+++.|.+..+......+.+..+++|++|+++++. .....+..+..+++|++|++++|.+ ...+|.. .
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~-----l~~~~~~~l~~l~~L~~L~Ls~n~l---~~~~~~~--~ 267 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK-----LSGDFSRAISTCTELKLLNISSNQF---VGPIPPL--P 267 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC-----CCSCHHHHTTTCSSCCEEECCSSCC---EESCCCC--C
T ss_pred cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc-----CCCcccHHHhcCCCCCEEECCCCcc---cCccCcc--c
Confidence 4567888888887776655557788888888888873 3344566678888888888888874 2223332 5
Q ss_pred ccCCcEEeccC--CC-ccCccccCC-Cccceec--CcCCC-ccCcccccccCCceeEecccccc-cCCCC-CCCCCCCCc
Q 045633 434 LIHLRYLQLSS--VE-ELPETCCEL-LNLQTLD--CLSLK-RLPQGIGKLINLRHLIFDVFGVD-YVPNG-FERLTGLRT 504 (794)
Q Consensus 434 l~~L~~L~L~~--~~-~lp~~i~~L-~~L~~L~--~~~l~-~lp~~~~~L~~L~~L~l~~~~l~-~lp~~-i~~l~~L~~ 504 (794)
+++|++|++++ +. .+|..+.++ .+|++|+ .+.+. .+|..++++++|++|+++.|.+. .+|.. ++.+++|++
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 56666666665 32 555555443 5566665 22232 34555555666666666555554 45543 555555555
Q ss_pred cCceEeccccCCCCCCccC-------------------cccccc--cccCCCeeEEccccCCCChhhhhhccccCCCCCc
Q 045633 505 LSGFTVARVDGEYSSKACN-------------------LEGLGN--LNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLV 563 (794)
Q Consensus 505 L~~~~~~~~~~~~~~~~~~-------------------l~~l~~--L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 563 (794)
|++..+.. .+..+..... ...+.. +++|+ .+.+.... ........+..+++|+
T Consensus 348 L~Ls~n~l-~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 348 LDLSFNEF-SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ-ELYLQNNG----FTGKIPPTLSNCSELV 421 (768)
T ss_dssp EECCSSEE-EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC-EEECCSSE----EEEECCGGGGGCTTCC
T ss_pred EeCcCCcc-CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc-EEECCCCc----cccccCHHHhcCCCCC
Confidence 55432211 0000000000 000000 11222 22222110 0011222344455555
Q ss_pred eEEEEecCCCCc---cccccccccC--cchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecC
Q 045633 564 HLILDFTKREDE---DYEEAPMWMN--EENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAF 638 (794)
Q Consensus 564 ~L~l~~~~~~~~---~~~~~p~~~~--~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~ 638 (794)
.|++++|..... .+..++.... ..........+..+..+++|+.|++++|...... |.++..+++|+.|+|++
T Consensus 422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTNLNWISLSN 499 (768)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCS
T ss_pred EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC--CHHHhcCCCCCEEEccC
Confidence 555555543210 0111110000 0000000123445667888999999998877543 88889999999999999
Q ss_pred CCCCCcCCC-CCCCCCcceeeecccccceEeCcccccCcccCCCccc
Q 045633 639 CPRCEIMPP-LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIH 684 (794)
Q Consensus 639 ~~~l~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~ 684 (794)
|.....+|. ++.+++|++|++++|.....+|..+.....++.+++.
T Consensus 500 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 976666775 8889999999999987777888887777666555554
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=9e-25 Score=253.13 Aligned_cols=380 Identities=14% Similarity=0.129 Sum_probs=264.5
Q ss_pred CcceEEEEEecccc-cCcccccCCCCccEEEE-cccCcchh---------------------------------------
Q 045633 356 EKLRHLTLMLGLRA-KFPVSIFDAKKLRSLIL-FDVTEDQS--------------------------------------- 394 (794)
Q Consensus 356 ~~~r~l~l~~~~~~-~~~~~~~~~~~L~~L~l-~~~~~~~~--------------------------------------- 394 (794)
.++..|.+.++... .+|+.+..+++|++|++ +++.....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 56788888777664 47889999999999999 55421100
Q ss_pred ---------------------------------hhhhhhHHHhccCCccceEEEcccCCCccccc---------------
Q 045633 395 ---------------------------------AASRGLQGLFDQLTCLRALKIEDFGLGDKTIE--------------- 426 (794)
Q Consensus 395 ---------------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------- 426 (794)
.+.. +|..|.++++|++|+|++|. +..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~----Lsg~~i~~~~~~~s~n~~ 477 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSP----FTYDNIAVDWEDANSDYA 477 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC----CCGGGBSSSCSCTTSHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCc----CCCCcccccccccccccc
Confidence 0011 56668999999999999999 444
Q ss_pred ---cCcccc--CccCCcEEeccC---CCccCccccCCCccceec--CcC-CC--ccCccccccc-------CCceeEecc
Q 045633 427 ---IPRGLE--NLIHLRYLQLSS---VEELPETCCELLNLQTLD--CLS-LK--RLPQGIGKLI-------NLRHLIFDV 486 (794)
Q Consensus 427 ---lp~~i~--~l~~L~~L~L~~---~~~lp~~i~~L~~L~~L~--~~~-l~--~lp~~~~~L~-------~L~~L~l~~ 486 (794)
+|+.++ ++++|++|+|++ ...+|..+++|.+|+.|+ .+. +. .+|..++.++ +|++|++++
T Consensus 478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred cccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 899988 999999999987 778999999999999999 444 66 4888888776 999999999
Q ss_pred cccccCCC--CCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCC-Cc
Q 045633 487 FGVDYVPN--GFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKN-LV 563 (794)
Q Consensus 487 ~~l~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~-L~ 563 (794)
|.+..+|. .++++++|+.|++..+.. . .+..+.++++|+ .+.+....- . .+...+..+++ |+
T Consensus 558 N~L~~ip~~~~l~~L~~L~~L~Ls~N~l------~---~lp~~~~L~~L~-~L~Ls~N~l-~----~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 558 NNLEEFPASASLQKMVKLGLLDCVHNKV------R---HLEAFGTNVKLT-DLKLDYNQI-E----EIPEDFCAFTDQVE 622 (876)
T ss_dssp SCCCBCCCHHHHTTCTTCCEEECTTSCC------C---BCCCCCTTSEES-EEECCSSCC-S----CCCTTSCEECTTCC
T ss_pred CcCCccCChhhhhcCCCCCEEECCCCCc------c---cchhhcCCCcce-EEECcCCcc-c----cchHHHhhccccCC
Confidence 99999998 899999999998644322 1 222455556666 666654321 1 23344677788 99
Q ss_pred eEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCC--CCccEEEEeecCCCccCC-CCchhc--cccCccEEeecC
Q 045633 564 HLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAP--PNIESLNITGFEGRRLIF-SSNWTA--SLDKLKRLDLAF 638 (794)
Q Consensus 564 ~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~-~p~~~~--~l~~L~~L~L~~ 638 (794)
.|++++|.+. .+|. .+... ++|+.|++++|.....++ .|..+. .+++|+.|+|++
T Consensus 623 ~L~Ls~N~L~-----~lp~---------------~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 623 GLGFSHNKLK-----YIPN---------------IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp EEECCSSCCC-----SCCS---------------CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred EEECcCCCCC-----cCch---------------hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence 9999998754 2332 23333 459999999998765420 012222 345899999999
Q ss_pred CCCCCcCCC--CCCCCCcceeeecccccceEeCcccccCc--------ccCCCcccccc---CCCccc--cCCccceeec
Q 045633 639 CPRCEIMPP--LGKLPSLEILRIAEMVSVKKVGDEFLGIG--------IRDHNHIHGTF---SSSSVV--AFPKLEKLDL 703 (794)
Q Consensus 639 ~~~l~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~--------~l~~~~l~~~~---~~~~~~--~~~~L~~L~l 703 (794)
|. +..+|. +..+++|+.|+|++| .+..+|....... .++.++++++. .+..+. .+++|+.|+|
T Consensus 683 N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~L 760 (876)
T 4ecn_A 683 NE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDV 760 (876)
T ss_dssp SC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEEC
T ss_pred Cc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEe
Confidence 95 446665 457899999999986 4667777655432 45555555421 122333 7788888888
Q ss_pred cccccccccccCCCCccCCCcccEEeecc------CccCcCCCcCccCCCCccEEEeccCccccccccccCCCCCccccc
Q 045633 704 WIMLQLEEWDFGKEDITIMPQIKSLMIFS------CEKLKSLPDQLLRSTTLESLEIGEAPIVEQNFKKDTGKDWSKISH 777 (794)
Q Consensus 704 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~------c~~l~~ip~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 777 (794)
+++ ++..+ +..+..+++|+.|++++ |.....+|..+..+++|++|++++|.. .... ..+. +.
T Consensus 761 s~N-~L~~l---p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip-----~~l~--~~ 828 (876)
T 4ecn_A 761 SYN-CFSSF---PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD-----EKLT--PQ 828 (876)
T ss_dssp CSS-CCSSC---CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC-----SCCC--SS
T ss_pred CCC-CCCcc---chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC-----Hhhc--CC
Confidence 774 45443 33455788888888876 444566787788888888888888865 2221 1121 46
Q ss_pred cceeeecccccc
Q 045633 778 IPNILISGRYEQ 789 (794)
Q Consensus 778 i~~~~~~~~~~~ 789 (794)
+..+.+++|.+.
T Consensus 829 L~~LdLs~N~l~ 840 (876)
T 4ecn_A 829 LYILDIADNPNI 840 (876)
T ss_dssp SCEEECCSCTTC
T ss_pred CCEEECCCCCCC
Confidence 777777777654
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=5.7e-25 Score=251.07 Aligned_cols=356 Identities=14% Similarity=0.154 Sum_probs=215.8
Q ss_pred cCcceEEEEEeccccc------------------Cccccc--CCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEE
Q 045633 355 QEKLRHLTLMLGLRAK------------------FPVSIF--DAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALK 414 (794)
Q Consensus 355 ~~~~r~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 414 (794)
...++.|.+..+.... +|..+. .+++|++|++++| .....+|..|.++++|++|+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-----~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-----PNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-----TTCSSCCTTTTTCSSCCEEE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-----cCCccChHHHhcCCCCCEEE
Confidence 4567777777777666 677777 7788888888777 23334556677777888888
Q ss_pred EcccC-CCcccc-ccCccccCc------cCCcEEeccC--CCccCc--cccCCCccceec--CcCCC-ccCcccccccCC
Q 045633 415 IEDFG-LGDKTI-EIPRGLENL------IHLRYLQLSS--VEELPE--TCCELLNLQTLD--CLSLK-RLPQGIGKLINL 479 (794)
Q Consensus 415 l~~~~-~~~~~~-~lp~~i~~l------~~L~~L~L~~--~~~lp~--~i~~L~~L~~L~--~~~l~-~lp~~~~~L~~L 479 (794)
+++|. + .. .+|..++++ ++|++|++++ +..+|. .++++.+|++|+ .+.+. .+| .++.+++|
T Consensus 280 Ls~n~~l---~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 280 VACNRGI---SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp CTTCTTS---CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred CcCCCCC---ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 88776 3 22 467767665 7788888877 667777 777777788777 45566 677 67777778
Q ss_pred ceeEecccccccCCCCCCCCCC-CCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhcccc-
Q 045633 480 RHLIFDVFGVDYVPNGFERLTG-LRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLE- 557 (794)
Q Consensus 480 ~~L~l~~~~l~~lp~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~- 557 (794)
++|+++.|.+..+|..++.+++ |+.|++....- ... + ..+.. ..+.+|+ .+.+....- .......+.
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l-~~l-p---~~~~~-~~l~~L~-~L~Ls~N~l----~~~~p~~l~~ 424 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYI-P---NIFDA-KSVSVMS-AIDFSYNEI----GSVDGKNFDP 424 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCC-SSC-C---SCCCT-TCSSCEE-EEECCSSCT----TTTTTCSSCT
T ss_pred CEEECCCCccccccHhhhhhcccCcEEEccCCcC-ccc-c---hhhhh-cccCccC-EEECcCCcC----CCcchhhhcc
Confidence 8888877777777777777777 77776543321 100 0 00111 0111233 344332211 111112233
Q ss_pred ------CCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhcc----
Q 045633 558 ------KKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTAS---- 627 (794)
Q Consensus 558 ------~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~---- 627 (794)
.+.+|+.|++++|... .+|. ..+..+++|+.|++++|....+ |..+..
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~-----~lp~--------------~~~~~l~~L~~L~Ls~N~l~~i---~~~~~~~~~~ 482 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQIS-----KFPK--------------ELFSTGSPLSSINLMGNMLTEI---PKNSLKDENE 482 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCC-----SCCT--------------HHHHTTCCCSEEECCSSCCSBC---CSSSSEETTE
T ss_pred cccccccCCCCCEEECcCCccC-----cCCH--------------HHHccCCCCCEEECCCCCCCCc---CHHHhccccc
Confidence 4457777777777643 1221 1122456777777777766644 443221
Q ss_pred ----ccCccEEeecCCCCCCcCCC-CC--CCCCcceeeecccccceEeCcccccCcccCCCcccc----------ccCCC
Q 045633 628 ----LDKLKRLDLAFCPRCEIMPP-LG--KLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHG----------TFSSS 690 (794)
Q Consensus 628 ----l~~L~~L~L~~~~~l~~l~~-l~--~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~----------~~~~~ 690 (794)
+++|+.|+|++|. +..+|. +. .+++|+.|+++++. ++.+|..+.....++.+++++ ...+.
T Consensus 483 ~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp ECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred cccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 2277777777774 335554 43 67777777777644 444666666666666665521 11233
Q ss_pred ccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCC------cC---ccCCCCccEEEeccCcccc
Q 045633 691 SVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLP------DQ---LLRSTTLESLEIGEAPIVE 761 (794)
Q Consensus 691 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip------~~---~~~l~~L~~L~l~~~~~l~ 761 (794)
.+..+++|+.|+++++ ++..++.. .+++|+.|++++|+.. .+. .. ...+...+..++.+|+.++
T Consensus 561 ~l~~l~~L~~L~Ls~N-~l~~ip~~-----~~~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 561 GITLCPSLTQLQIGSN-DIRKVNEK-----ITPNISVLDIKDNPNI-SIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp TGGGCSSCCEEECCSS-CCCBCCSC-----CCTTCCEEECCSCTTC-EEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred HHhcCCCCCEEECCCC-cCCccCHh-----HhCcCCEEECcCCCCc-cccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 4678999999999995 45665432 3389999999999543 332 11 1122333556888998764
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1e-24 Score=252.67 Aligned_cols=344 Identities=15% Similarity=0.186 Sum_probs=232.5
Q ss_pred ccCcceEEEEEeccccc------------------Cccccc--CCCCccEEEEcccCcchhhhhhhhHHHhccCCccceE
Q 045633 354 CQEKLRHLTLMLGLRAK------------------FPVSIF--DAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRAL 413 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 413 (794)
....++.|.+..+.+.. +|..+. .+++|+.|++++| .....+|..|.++++|++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-----~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-----PNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-----TTCCSCCGGGGGCSSCCEE
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-----CCCccChHHHhCCCCCCEE
Confidence 45679999999998877 788877 8999999999988 3344566778999999999
Q ss_pred EEcccC-CCcccc-ccCccccCcc-------CCcEEeccC--CCccCc--cccCCCccceec--CcCCCccCcccccccC
Q 045633 414 KIEDFG-LGDKTI-EIPRGLENLI-------HLRYLQLSS--VEELPE--TCCELLNLQTLD--CLSLKRLPQGIGKLIN 478 (794)
Q Consensus 414 ~l~~~~-~~~~~~-~lp~~i~~l~-------~L~~L~L~~--~~~lp~--~i~~L~~L~~L~--~~~l~~lp~~~~~L~~ 478 (794)
++++|. + .. .+|..++++. +|++|+|++ +..+|. .++++.+|+.|+ .+.+..+| .++.+++
T Consensus 521 ~Ls~N~~l---sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~ 596 (876)
T 4ecn_A 521 NIACNRGI---SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVK 596 (876)
T ss_dssp ECTTCTTS---CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSE
T ss_pred ECcCCCCc---ccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCc
Confidence 999997 4 23 5777777666 999999998 889998 899999999999 56677889 7999999
Q ss_pred CceeEecccccccCCCCCCCCCC-CCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhcccc
Q 045633 479 LRHLIFDVFGVDYVPNGFERLTG-LRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLE 557 (794)
Q Consensus 479 L~~L~l~~~~l~~lp~~i~~l~~-L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~ 557 (794)
|++|+++.|.+..+|..+..+++ |+.|++..+.. ... + ..+..+ ...+|+ .+.+....-.... ......+.
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L-~~l-p---~~~~~~-~~~~L~-~L~Ls~N~l~g~i-p~l~~~l~ 668 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL-KYI-P---NIFNAK-SVYVMG-SVDFSYNKIGSEG-RNISCSMD 668 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC-CSC-C---SCCCTT-CSSCEE-EEECCSSCTTTTS-SSCSSCTT
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCCC-CcC-c---hhhhcc-ccCCCC-EEECcCCcCCCcc-ccchhhhc
Confidence 99999999999999999999998 99988544321 100 0 011111 111132 3333322110000 00001111
Q ss_pred --CCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhcc--------
Q 045633 558 --KKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTAS-------- 627 (794)
Q Consensus 558 --~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~-------- 627 (794)
.+.+|+.|++++|... .+|. ..+..+++|+.|+|++|....+ |.++..
T Consensus 669 ~~~~~~L~~L~Ls~N~L~-----~lp~--------------~~~~~l~~L~~L~Ls~N~L~~i---p~~~~~~~~~~l~n 726 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQ-----KFPT--------------ELFATGSPISTIILSNNLMTSI---PENSLKPKDGNYKN 726 (876)
T ss_dssp TCCCCCEEEEECCSSCCC-----SCCH--------------HHHHTTCCCSEEECCSCCCSCC---CTTSSSCTTSCCTT
T ss_pred cccCCCcCEEEccCCcCC-----ccCH--------------HHHccCCCCCEEECCCCcCCcc---ChHHhccccccccc
Confidence 2346777777777643 1221 1122456777777777766644 544332
Q ss_pred ccCccEEeecCCCCCCcCCC-CC--CCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeecc
Q 045633 628 LDKLKRLDLAFCPRCEIMPP-LG--KLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLW 704 (794)
Q Consensus 628 l~~L~~L~L~~~~~l~~l~~-l~--~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~ 704 (794)
+++|+.|+|++| .+..+|. +. .+++|+.|+|++|. ++.+|.. +..+++|+.|+|+
T Consensus 727 l~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~--------------------l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 727 TYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQ--------------------PLNSSQLKAFGIR 784 (876)
T ss_dssp GGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCG--------------------GGGCTTCCEEECC
T ss_pred cCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCccchh--------------------hhcCCCCCEEECC
Confidence 237777777777 3445554 43 67777777777643 3334432 5688999999998
Q ss_pred ccccccc---cccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCcccc
Q 045633 705 IMLQLEE---WDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPIVE 761 (794)
Q Consensus 705 ~~~~l~~---~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~l~ 761 (794)
+++.+.. ....+..+..+++|+.|++++| .++.+|..+. ++|+.|++++|+...
T Consensus 785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECCCCCCCc
Confidence 7442111 1223455678999999999999 5699999864 799999999998643
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.3e-23 Score=240.27 Aligned_cols=139 Identities=22% Similarity=0.190 Sum_probs=115.0
Q ss_pred EEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccCccCCc
Q 045633 360 HLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLIHLR 438 (794)
Q Consensus 360 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L~ 438 (794)
.+.........+|..+. +++++|+++++. +....+..|.++++|++|++++|. +..+ |..|+++++|+
T Consensus 15 ~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~----l~~i~~~~~~~l~~L~ 83 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIP--SSTKNIDLSFNP-----LKILKSYSFSNFSELQWLDLSRCE----IETIEDKAWHGLHHLS 83 (606)
T ss_dssp EEECTTSCCSSCCTTSC--TTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTCC----CCEECTTTTTTCTTCC
T ss_pred ceEccCCCcccCCCCCC--CCcCEEECCCCC-----cCEeChhhccCCccCcEEeCCCCc----ccccCHHHhhchhhcC
Confidence 45555556666776554 899999999983 344445568999999999999999 6666 66799999999
Q ss_pred EEeccC--CCcc-CccccCCCccceec--CcCCCccC-cccccccCCceeEecccccc--cCCCCCCCCCCCCccCceE
Q 045633 439 YLQLSS--VEEL-PETCCELLNLQTLD--CLSLKRLP-QGIGKLINLRHLIFDVFGVD--YVPNGFERLTGLRTLSGFT 509 (794)
Q Consensus 439 ~L~L~~--~~~l-p~~i~~L~~L~~L~--~~~l~~lp-~~~~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~~~~ 509 (794)
+|+|++ +..+ |..+++|.+|++|+ .+.+..+| ..++++++|++|+++.|.+. .+|..++++++|++|++..
T Consensus 84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence 999998 7777 78899999999999 56777776 56999999999999999988 4789999999999998654
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.1e-23 Score=229.66 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=43.9
Q ss_pred cccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCcc
Q 045633 692 VVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 692 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~ 759 (794)
+..+++|+.|++.++ .+..+. .+..+++|+.|++++| .+..++. +..+++|+.|++++|+.
T Consensus 327 ~~~l~~L~~L~l~~n-~l~~~~----~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNN-KVSDVS----SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCG----GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred hccCccCCEeECCCC-ccCCch----hhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCCcc
Confidence 457788888888875 444442 3457888888888888 4555555 67788888888888865
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=2e-23 Score=233.96 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=65.0
Q ss_pred CcceEEEEEecccccCc-ccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCc
Q 045633 356 EKLRHLTLMLGLRAKFP-VSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENL 434 (794)
Q Consensus 356 ~~~r~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l 434 (794)
..+++|++..+.+...+ ..+..+++|++|+++++. +....+..|.++++|++|++++|. +..+|.. .+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~N~----l~~lp~~--~l 89 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-----IQYLDISVFKFNQELEYLDLSHNK----LVKISCH--PT 89 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-----CCEEEGGGGTTCTTCCEEECCSSC----CCEEECC--CC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCc-----cCCcChHHhhcccCCCEEecCCCc----eeecCcc--cc
Confidence 55666666665555443 245556666666666552 222334445566666666666665 4455544 56
Q ss_pred cCCcEEeccC--CCc--cCccccCCCccceec--CcCCCccCcccccccCC--ceeEeccccc
Q 045633 435 IHLRYLQLSS--VEE--LPETCCELLNLQTLD--CLSLKRLPQGIGKLINL--RHLIFDVFGV 489 (794)
Q Consensus 435 ~~L~~L~L~~--~~~--lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L--~~L~l~~~~l 489 (794)
++|++|+|++ +.. +|..+++|.+|++|+ .+.+.. ..+..+++| ++|+++.|.+
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 6666666665 433 345566666666665 333333 234555555 6666655544
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=4.3e-24 Score=242.59 Aligned_cols=142 Identities=18% Similarity=0.210 Sum_probs=114.0
Q ss_pred ccccCcceEEEEEecccccCc-ccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC-c
Q 045633 352 STCQEKLRHLTLMLGLRAKFP-VSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-R 429 (794)
Q Consensus 352 ~~~~~~~r~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~ 429 (794)
...+..++.|++..+.....+ ..+..+++|++|+++++. +....+..|.++++|++|++++|. +..+| .
T Consensus 24 ~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----i~~i~~~~~~~l~~L~~L~L~~n~----l~~~~~~ 94 (570)
T 2z63_A 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTGNP----IQSLALG 94 (570)
T ss_dssp SSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCC----CCEECTT
T ss_pred CCccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-----CCccCcccccCchhCCEEeCcCCc----CCccCHh
Confidence 345678999999988877654 467889999999999883 334445678899999999999998 66664 6
Q ss_pred cccCccCCcEEeccC--CCccCc-cccCCCccceec--CcCCCc--cCcccccccCCceeEecccccccCC-CCCCCCCC
Q 045633 430 GLENLIHLRYLQLSS--VEELPE-TCCELLNLQTLD--CLSLKR--LPQGIGKLINLRHLIFDVFGVDYVP-NGFERLTG 501 (794)
Q Consensus 430 ~i~~l~~L~~L~L~~--~~~lp~-~i~~L~~L~~L~--~~~l~~--lp~~~~~L~~L~~L~l~~~~l~~lp-~~i~~l~~ 501 (794)
.|+.+++|++|++++ +..+|. .++++.+|++|+ .+.+.. +|..++++++|++|+++.|.+..++ ..++.+++
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence 799999999999998 888876 689999999999 455664 6888999999999999888887765 45666666
Q ss_pred C
Q 045633 502 L 502 (794)
Q Consensus 502 L 502 (794)
|
T Consensus 175 L 175 (570)
T 2z63_A 175 M 175 (570)
T ss_dssp C
T ss_pred c
Confidence 6
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.4e-23 Score=239.98 Aligned_cols=140 Identities=11% Similarity=-0.020 Sum_probs=110.9
Q ss_pred eEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccCccCC
Q 045633 359 RHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLIHL 437 (794)
Q Consensus 359 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L 437 (794)
+.+.........+|..+. +++++|+++++. +....+..|.++++|++|++++|. +..+ |..|+++++|
T Consensus 15 ~~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L 83 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP--NSTECLEFSFNV-----LPTIQNTTFSRLINLTFLDLTRCQ----IYWIHEDTFQSQHRL 83 (606)
T ss_dssp TEEECTTSCCSSCCTTSC--TTCCEEECTTCC-----CSEECTTTSTTCTTCSEEECTTCC----CCEECTTTTTTCTTC
T ss_pred ceEECCCCCcccCcCCCC--CcCcEEEccCCc-----cCcCChhHhccCccceEEECCCCc----cceeChhhccCcccc
Confidence 344444455566776654 589999999983 344446678999999999999999 5554 7889999999
Q ss_pred cEEeccC--CCcc-CccccCCCccceec--CcCCCcc-CcccccccCCceeEecccccccCC-CCCCCCCCCCccCceE
Q 045633 438 RYLQLSS--VEEL-PETCCELLNLQTLD--CLSLKRL-PQGIGKLINLRHLIFDVFGVDYVP-NGFERLTGLRTLSGFT 509 (794)
Q Consensus 438 ~~L~L~~--~~~l-p~~i~~L~~L~~L~--~~~l~~l-p~~~~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~~~~ 509 (794)
++|+|++ +..+ |..++++.+|++|+ .+.+..+ |..++++++|++|+++.|.+..++ ..+..+++|++|++..
T Consensus 84 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162 (606)
T ss_dssp CEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred CeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence 9999998 6665 67899999999999 5667777 566999999999999999998874 3444599999998644
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=1.1e-23 Score=237.83 Aligned_cols=383 Identities=15% Similarity=0.150 Sum_probs=230.7
Q ss_pred cccCcceEEEEEecccccC-cccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCcc-
Q 045633 353 TCQEKLRHLTLMLGLRAKF-PVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRG- 430 (794)
Q Consensus 353 ~~~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~- 430 (794)
.....++.|++..+..... +..+..+++|++|+++++. +....+..|.++++|++|++++|. +..+|..
T Consensus 23 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~ 93 (549)
T 2z81_A 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-----INTIEGDAFYSLGSLEHLDLSDNH----LSSLSSSW 93 (549)
T ss_dssp CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTSC----CCSCCHHH
T ss_pred cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-----cCccChhhccccccCCEEECCCCc----cCccCHHH
Confidence 3457899999999887765 4568889999999999883 334455678899999999999999 6666654
Q ss_pred ccCccCCcEEeccC--CCc--cCccccCCCccceec---CcCCCccC-cccccccCCceeEeccccccc-CCCCCCCCCC
Q 045633 431 LENLIHLRYLQLSS--VEE--LPETCCELLNLQTLD---CLSLKRLP-QGIGKLINLRHLIFDVFGVDY-VPNGFERLTG 501 (794)
Q Consensus 431 i~~l~~L~~L~L~~--~~~--lp~~i~~L~~L~~L~---~~~l~~lp-~~~~~L~~L~~L~l~~~~l~~-lp~~i~~l~~ 501 (794)
++++++|++|++++ +.. .|..++++.+|++|+ +..+..+| ..++++++|++|+++.|.+.. .|..++.+++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 89999999999998 664 467899999999999 33367776 468899999999998888875 5677777766
Q ss_pred CCccCceEec-----------------------cccCCC--C-CCccCcccc----------------------cccccC
Q 045633 502 LRTLSGFTVA-----------------------RVDGEY--S-SKACNLEGL----------------------GNLNHL 533 (794)
Q Consensus 502 L~~L~~~~~~-----------------------~~~~~~--~-~~~~~l~~l----------------------~~L~~L 533 (794)
|+.|++.... .+.+.. + ........+ ..+.++
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 6666532211 000000 0 000000000 001111
Q ss_pred CCeeEEcccc--CCCChhhhhhcccc-----------------------------CCCCCceEEEEecCCCCcccccccc
Q 045633 534 RGFLRICGLG--NVTAADEAKNAHLE-----------------------------KKKNLVHLILDFTKREDEDYEEAPM 582 (794)
Q Consensus 534 ~~~l~~~~~~--~~~~~~~~~~~~l~-----------------------------~~~~L~~L~l~~~~~~~~~~~~~p~ 582 (794)
+ .+.+.++. ............+. ...+|+.|++++|... .+|.
T Consensus 254 ~-~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-----~ip~ 327 (549)
T 2z81_A 254 S-EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-----LVPC 327 (549)
T ss_dssp C-EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-----CCCH
T ss_pred c-ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-----cCCH
Confidence 1 11111110 00000000000000 1123444444443322 1221
Q ss_pred ccC----------cchhHHHHHH---hhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-C
Q 045633 583 WMN----------EENEAKQEAI---CEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-L 648 (794)
Q Consensus 583 ~~~----------~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l 648 (794)
++. .......... ...+..+++|+.|++++|........+..+..+++|+.|++++| .++.+|. +
T Consensus 328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~ 406 (549)
T 2z81_A 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSC 406 (549)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCC
T ss_pred HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhh
Confidence 110 0000000111 23356678888888888877654100134677888888888888 4456665 7
Q ss_pred CCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEE
Q 045633 649 GKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSL 728 (794)
Q Consensus 649 ~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L 728 (794)
+.+++|++|++++|. ++.++.... ..++.+++++..-......+++|+.|+++++ ++..++. ...+++|+.|
T Consensus 407 ~~~~~L~~L~Ls~N~-l~~l~~~~~--~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~----~~~l~~L~~L 478 (549)
T 2z81_A 407 QWPEKMRFLNLSSTG-IRVVKTCIP--QTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD----ASLFPVLLVM 478 (549)
T ss_dssp CCCTTCCEEECTTSC-CSCCCTTSC--TTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC----GGGCTTCCEE
T ss_pred cccccccEEECCCCC-cccccchhc--CCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC----cccCccCCEE
Confidence 778888888888754 555554332 3455555555433333457888888888884 5665542 2367888888
Q ss_pred eeccCccCcCCCc-CccCCCCccEEEeccCccc
Q 045633 729 MIFSCEKLKSLPD-QLLRSTTLESLEIGEAPIV 760 (794)
Q Consensus 729 ~l~~c~~l~~ip~-~~~~l~~L~~L~l~~~~~l 760 (794)
++++| .++.+|. .+..+++|+.|++++|+..
T Consensus 479 ~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 479 KISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp ECCSS-CCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred ecCCC-ccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 88888 5666554 4677888888888888753
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=2.6e-22 Score=237.22 Aligned_cols=318 Identities=17% Similarity=0.164 Sum_probs=188.2
Q ss_pred ccCcceEEEEEecccccC-cccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-Cccc
Q 045633 354 CQEKLRHLTLMLGLRAKF-PVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGL 431 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i 431 (794)
.+..+++|.+..+.+... +..+..+++|++|+++++.. .....+..|.++++|++|+|++|. +..+ |..|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~----~~~i~~~~f~~L~~L~~L~Ls~N~----l~~~~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT----PLTIDKEAFRNLPNLRILDLGSSK----IYFLHPDAF 93 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC----CCEECTTTTSSCTTCCEEECTTCC----CCEECTTSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC----ccccCHHHhcCCCCCCEEECCCCc----CcccCHhHc
Confidence 678899999999988764 56788999999999998831 222236678999999999999999 5555 8889
Q ss_pred cCccCCcEEeccC--CCc-cCcc--ccCCCccceec--CcCCCcc--CcccccccCCceeEecccccccC-CCCCCCC--
Q 045633 432 ENLIHLRYLQLSS--VEE-LPET--CCELLNLQTLD--CLSLKRL--PQGIGKLINLRHLIFDVFGVDYV-PNGFERL-- 499 (794)
Q Consensus 432 ~~l~~L~~L~L~~--~~~-lp~~--i~~L~~L~~L~--~~~l~~l--p~~~~~L~~L~~L~l~~~~l~~l-p~~i~~l-- 499 (794)
+++++|++|+|++ +.. +|.. +++|.+|++|+ .+.+..+ +..+++|++|++|+++.|.+..+ |..+..+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 9999999999998 544 5655 89999999999 5566665 35689999999999988888764 4556655
Q ss_pred CCCCccCceEeccccCCCCCCccCccc-ccccccCCCeeEEccccCC--------------------------------C
Q 045633 500 TGLRTLSGFTVARVDGEYSSKACNLEG-LGNLNHLRGFLRICGLGNV--------------------------------T 546 (794)
Q Consensus 500 ~~L~~L~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~~~l~~~~~~~~--------------------------------~ 546 (794)
++|+.|++..+.. ....+........ +.++ .|+ .+++....-. .
T Consensus 174 ~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~~~-~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 174 KTLSFFSLAANSL-YSRVSVDWGKCMNPFRNM-VLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp CSSCCCEECCSBS-CCCCCCCCCSSSCTTTTC-CBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred CccceEECCCCcc-ccccccchhhcCCccccC-cee-EEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 6777776443221 1111000000000 0000 122 2322211000 0
Q ss_pred ChhhhhhccccC--CCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCch
Q 045633 547 AADEAKNAHLEK--KKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNW 624 (794)
Q Consensus 547 ~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~ 624 (794)
.........+.. .++|+.|++++|.... .....+..+++|+.|++++|...... |..
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-------------------~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~ 309 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFS-------------------LNSRVFETLKDLKVLNLAYNKINKIA--DEA 309 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCE-------------------ECSCCSSSCCCCCEEEEESCCCCEEC--TTT
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccc-------------------cChhhhhcCCCCCEEECCCCcCCCCC--hHH
Confidence 000011111222 2567778877776431 11234555666777777666655542 445
Q ss_pred hccccCccEEeecCCCCCCcCC-CCCCCCCcceeeecccccceEeCc-ccccCcccCCCccccccCCCccccCCccceee
Q 045633 625 TASLDKLKRLDLAFCPRCEIMP-PLGKLPSLEILRIAEMVSVKKVGD-EFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLD 702 (794)
Q Consensus 625 ~~~l~~L~~L~L~~~~~l~~l~-~l~~L~~L~~L~l~~~~~l~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~ 702 (794)
+..+++|+.|+|++|......+ .++.+++|+.|+++++. +..++. .+.....++.++++++.... +..+++|+.|.
T Consensus 310 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~L~~L~ 387 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTT-IHFIPSIPDIF 387 (844)
T ss_dssp TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCC-CSSCCSCSEEE
T ss_pred hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCCCCc-ccCCCCcchhc
Confidence 6666677777776664322223 25666666666666543 444433 23334445555444432211 22244444444
Q ss_pred ccc
Q 045633 703 LWI 705 (794)
Q Consensus 703 l~~ 705 (794)
+.+
T Consensus 388 l~~ 390 (844)
T 3j0a_A 388 LSG 390 (844)
T ss_dssp EES
T ss_pred cCC
Confidence 443
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.9e-22 Score=227.83 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=90.5
Q ss_pred eEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccCccCC
Q 045633 359 RHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLIHL 437 (794)
Q Consensus 359 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L 437 (794)
+.+.+..+....+|..+. +++++|+++++. +....+..|.++++|++|++++|. +..+ |..|+++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~-----i~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNS-----ISELRMPDISFLSELRVLRLSHNR----IRSLDFHVFLFNQDL 102 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSC-----CCCCCGGGTTTCTTCCEEECCSCC----CCEECTTTTTTCTTC
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCC-----ccccChhhhccCCCccEEECCCCC----CCcCCHHHhCCCCCC
Confidence 666666666666665543 677888877773 333344557777888888888877 5555 5667778888
Q ss_pred cEEeccC--CCccCccccCCCccceec--CcCCCccC--cccccccCCceeEecccccccCCCCCCCCCCC--CccCc
Q 045633 438 RYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLP--QGIGKLINLRHLIFDVFGVDYVPNGFERLTGL--RTLSG 507 (794)
Q Consensus 438 ~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp--~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~~ 507 (794)
++|+|++ +..+|.. .+.+|++|+ .+.+..+| ..++++++|++|+++.|.+.. ..+..+++| +.|++
T Consensus 103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILL 176 (562)
T ss_dssp CEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEE
T ss_pred CEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEe
Confidence 8888877 7777766 677788877 45566554 567778888888887777664 234455555 66554
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=8.5e-23 Score=224.85 Aligned_cols=342 Identities=18% Similarity=0.235 Sum_probs=171.9
Q ss_pred CcceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCcc
Q 045633 356 EKLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLI 435 (794)
Q Consensus 356 ~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~ 435 (794)
..++.+.+..+....++ .+..+++|++|+++++. ... ++. +.++++|++|++++|. +..++. +++++
T Consensus 46 ~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~-----l~~-~~~-~~~l~~L~~L~l~~n~----l~~~~~-~~~l~ 112 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ-----LTD-ITP-LKNLTKLVDILMNNNQ----IADITP-LANLT 112 (466)
T ss_dssp HTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSC-----CCC-CGG-GTTCTTCCEEECCSSC----CCCCGG-GTTCT
T ss_pred ccccEEecCCCCCccCc-chhhhcCCCEEECCCCc-----cCC-chh-hhccccCCEEECCCCc----cccChh-hcCCC
Confidence 34555555555554443 34556666666666652 111 122 5566666666666666 444444 66666
Q ss_pred CCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCceEec
Q 045633 436 HLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTVA 511 (794)
Q Consensus 436 ~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~ 511 (794)
+|++|++++ +..+|. +.++.+|++|+ .+.+..+|. ++.+++|++|+++ +.+..++. ++++++|+.|++..+.
T Consensus 113 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNK 188 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCc
Confidence 666666665 555543 56666666666 334444443 5566666666663 33333332 5555666665543221
Q ss_pred cccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHH
Q 045633 512 RVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAK 591 (794)
Q Consensus 512 ~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~ 591 (794)
. ..+..+..+++|+ .+.+....- ... ..+..+++|+.|++++|....
T Consensus 189 l---------~~~~~l~~l~~L~-~L~l~~n~l-~~~-----~~~~~l~~L~~L~l~~n~l~~----------------- 235 (466)
T 1o6v_A 189 V---------SDISVLAKLTNLE-SLIATNNQI-SDI-----TPLGILTNLDELSLNGNQLKD----------------- 235 (466)
T ss_dssp C---------CCCGGGGGCTTCS-EEECCSSCC-CCC-----GGGGGCTTCCEEECCSSCCCC-----------------
T ss_pred C---------CCChhhccCCCCC-EEEecCCcc-ccc-----ccccccCCCCEEECCCCCccc-----------------
Confidence 1 1122233444444 444433211 110 013445666666666665431
Q ss_pred HHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcc
Q 045633 592 QEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDE 671 (794)
Q Consensus 592 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~ 671 (794)
.+.+..+++|+.|++++|..... +. +..+++|+.|++++|. +..++.++.+++|+.|++++|. ++.++.
T Consensus 236 ----~~~l~~l~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~- 304 (466)
T 1o6v_A 236 ----IGTLASLTNLTDLDLANNQISNL---AP-LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQ-LEDISP- 304 (466)
T ss_dssp ----CGGGGGCTTCSEEECCSSCCCCC---GG-GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC-CSCCGG-
T ss_pred ----chhhhcCCCCCEEECCCCccccc---hh-hhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCCc-ccCchh-
Confidence 12334456666666666655443 22 5556666666666663 3334445566666666666543 222211
Q ss_pred cccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccE
Q 045633 672 FLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLES 751 (794)
Q Consensus 672 ~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~ 751 (794)
+..+++|+.|+++++ ++..+.. +..+++|+.|++++| .++.++ .+..+++|++
T Consensus 305 --------------------~~~l~~L~~L~L~~n-~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~ 357 (466)
T 1o6v_A 305 --------------------ISNLKNLTYLTLYFN-NISDISP----VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINW 357 (466)
T ss_dssp --------------------GGGCTTCSEEECCSS-CCSCCGG----GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCE
T ss_pred --------------------hcCCCCCCEEECcCC-cCCCchh----hccCccCCEeECCCC-ccCCch-hhccCCCCCE
Confidence 345566666666654 3333221 235666666666666 455553 3455666666
Q ss_pred EEeccCccccccccccCCCCCccccccceeeeccccccCCC
Q 045633 752 LEIGEAPIVEQNFKKDTGKDWSKISHIPNILISGRYEQGGP 792 (794)
Q Consensus 752 L~l~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 792 (794)
|++++|..- ... ....+.++..+.+.+|.+.+.|
T Consensus 358 L~l~~n~l~-~~~------~~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 358 LSAGHNQIS-DLT------PLANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp EECCSSCCC-BCG------GGTTCTTCCEEECCCEEEECCC
T ss_pred EeCCCCccC-ccc------hhhcCCCCCEEeccCCcccCCc
Confidence 666666431 111 1334444555555555555443
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=238.12 Aligned_cols=362 Identities=18% Similarity=0.170 Sum_probs=209.1
Q ss_pred ccCcceEEEEEecccccCc-ccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCc-cc
Q 045633 354 CQEKLRHLTLMLGLRAKFP-VSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPR-GL 431 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~-~i 431 (794)
....+++|++..+.....+ ..+..+++|++|+++++. .....+..|.++++|++|++++|. +..+|. .+
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~----l~~l~~~~~ 120 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-----IQSLALGAFSGLSSLQKLVAVETN----LASLENFPI 120 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTTSC----CCCSTTCSC
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-----CCccCHhhhcCccccccccccccc----cccCCCccc
Confidence 3456888888877766654 346778888888888772 333344567788888888888887 666654 57
Q ss_pred cCccCCcEEeccC--CCc--cCccccCCCccceec--CcCCCccC-cccccccCC----ceeEecccccccCC-------
Q 045633 432 ENLIHLRYLQLSS--VEE--LPETCCELLNLQTLD--CLSLKRLP-QGIGKLINL----RHLIFDVFGVDYVP------- 493 (794)
Q Consensus 432 ~~l~~L~~L~L~~--~~~--lp~~i~~L~~L~~L~--~~~l~~lp-~~~~~L~~L----~~L~l~~~~l~~lp------- 493 (794)
+++++|++|++++ +.. +|..++++++|++|+ .+.+..++ ..++.+++| +.|+++.|.+..++
T Consensus 121 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~ 200 (570)
T 2z63_A 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200 (570)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC
Confidence 7888888888887 553 677888888888887 44455543 345555555 45555444333222
Q ss_pred ---------------------------------------------------------------------------CCCCC
Q 045633 494 ---------------------------------------------------------------------------NGFER 498 (794)
Q Consensus 494 ---------------------------------------------------------------------------~~i~~ 498 (794)
..+..
T Consensus 201 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~ 280 (570)
T 2z63_A 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280 (570)
T ss_dssp EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG
T ss_pred cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC
Confidence 22333
Q ss_pred CCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhh----------------hhccccCCCCC
Q 045633 499 LTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEA----------------KNAHLEKKKNL 562 (794)
Q Consensus 499 l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~----------------~~~~l~~~~~L 562 (794)
+++|+.|++..+.. ... . ..+..+ +|+ .+.+....-. ..... .......+++|
T Consensus 281 l~~L~~L~l~~~~l-~~l----~---~~~~~~-~L~-~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L 349 (570)
T 2z63_A 281 LTNVSSFSLVSVTI-ERV----K---DFSYNF-GWQ-HLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349 (570)
T ss_dssp GTTCSEEEEESCEE-CSC----C---BCCSCC-CCS-EEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTC
T ss_pred cCcccEEEecCccc-hhh----h---hhhccC-Ccc-EEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCC
Confidence 44555554322211 000 0 011112 233 3333322110 00000 00001334555
Q ss_pred ceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCC
Q 045633 563 VHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRC 642 (794)
Q Consensus 563 ~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l 642 (794)
+.|++++|.... . ......+..+++|+.|++++|..... |..+..+++|+.|++++|...
T Consensus 350 ~~L~l~~n~l~~-----~------------~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~l~~L~~L~l~~n~l~ 409 (570)
T 2z63_A 350 EFLDLSRNGLSF-----K------------GCCSQSDFGTTSLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLK 409 (570)
T ss_dssp CEEECCSSCCBE-----E------------EEEEHHHHTCSCCCEEECCSCSEEEE---EEEEETCTTCCEEECTTSEEE
T ss_pred CEEeCcCCccCc-----c------------ccccccccccCccCEEECCCCccccc---cccccccCCCCEEEccCCccc
Confidence 555555554320 0 00012344567788888887776665 555777888888888887543
Q ss_pred CcCC--CCCCCCCcceeeecccccceEeCcccccCcccCCCcccccc-----CCCccccCCccceeeccccccccccccC
Q 045633 643 EIMP--PLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTF-----SSSSVVAFPKLEKLDLWIMLQLEEWDFG 715 (794)
Q Consensus 643 ~~l~--~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 715 (794)
...+ .+..+++|++|++++|......+..+.+...++.+.+.+.. .+..+..+++|+.|+++++ ++..+.
T Consensus 410 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~-- 486 (570)
T 2z63_A 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLS-- 486 (570)
T ss_dssp SCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEEC--
T ss_pred cccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCC--
Confidence 3333 36778888888888776444455555555566666555421 2344667778888888774 344332
Q ss_pred CCCccCCCcccEEeeccCccCcCCCc-CccCCCCccEEEeccCcc
Q 045633 716 KEDITIMPQIKSLMIFSCEKLKSLPD-QLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 716 ~~~~~~l~~L~~L~l~~c~~l~~ip~-~~~~l~~L~~L~l~~~~~ 759 (794)
+..+..+++|+.|++++| .++.+|. .+..+++|++|++++|+.
T Consensus 487 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 487 PTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 233456778888888877 5555543 456777888888888765
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.1e-22 Score=236.00 Aligned_cols=149 Identities=19% Similarity=0.159 Sum_probs=118.2
Q ss_pred ccccCcceEEEEEecccccCcc-cccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCc-
Q 045633 352 STCQEKLRHLTLMLGLRAKFPV-SIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPR- 429 (794)
Q Consensus 352 ~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~- 429 (794)
...+..+++|.+..+.....++ .+..+++|++|+++++. +....+..|.++++|++|++++|. +..+|.
T Consensus 21 ~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~n~----l~~l~~~ 91 (680)
T 1ziw_A 21 DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-----ISKLEPELCQKLPMLKVLNLQHNE----LSQLSDK 91 (680)
T ss_dssp SCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-----CCCCCTTHHHHCTTCCEEECCSSC----CCCCCTT
T ss_pred cccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-----cCccCHHHHhcccCcCEEECCCCc----cCccChh
Confidence 3456789999999998877665 47889999999999883 344456678899999999999998 777876
Q ss_pred cccCccCCcEEeccC--CCccC-ccccCCCccceec--CcCCCcc-CcccccccCCceeEecccccccCCCC---CCCCC
Q 045633 430 GLENLIHLRYLQLSS--VEELP-ETCCELLNLQTLD--CLSLKRL-PQGIGKLINLRHLIFDVFGVDYVPNG---FERLT 500 (794)
Q Consensus 430 ~i~~l~~L~~L~L~~--~~~lp-~~i~~L~~L~~L~--~~~l~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~---i~~l~ 500 (794)
.|+++++|++|++++ +..+| ..++++.+|++|+ .+.+... |..++++++|++|+++.|.+..++.. ...++
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc
Confidence 599999999999998 77777 5699999999999 4456554 45688999999999988888877643 23557
Q ss_pred CCCccCceE
Q 045633 501 GLRTLSGFT 509 (794)
Q Consensus 501 ~L~~L~~~~ 509 (794)
+|+.|++..
T Consensus 172 ~L~~L~L~~ 180 (680)
T 1ziw_A 172 SLKKLELSS 180 (680)
T ss_dssp EESEEECTT
T ss_pred cccEEECCC
Confidence 788877543
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=227.28 Aligned_cols=368 Identities=14% Similarity=0.084 Sum_probs=214.0
Q ss_pred eEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccCccCC
Q 045633 359 RHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLIHL 437 (794)
Q Consensus 359 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L 437 (794)
+.+++..+....+|..+. ++++.|+++++. +....+..|.++++|++|++++|. +..+ |..|+++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L 71 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNY-----ISELWTSDILSLSKLRILIISHNR----IQYLDISVFKFNQEL 71 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSC-----CCCCCHHHHTTCTTCCEEECCSSC----CCEEEGGGGTTCTTC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCc-----ccccChhhccccccccEEecCCCc----cCCcChHHhhcccCC
Confidence 456777777777777665 899999999983 444456678999999999999999 6565 7789999999
Q ss_pred cEEeccC--CCccCccccCCCccceec--CcCCCc--cCcccccccCCceeEecccccccCCCCCCCCCCC--CccCceE
Q 045633 438 RYLQLSS--VEELPETCCELLNLQTLD--CLSLKR--LPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGL--RTLSGFT 509 (794)
Q Consensus 438 ~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~--lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~~~~ 509 (794)
++|+|++ +..+|.. .+.+|++|+ .+.+.. +|..++++++|++|+++.|.+.. ..+..+++| +.|++..
T Consensus 72 ~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 72 EYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp CEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEE
T ss_pred CEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeec
Confidence 9999998 8899987 899999999 556765 57889999999999998888765 345566666 6665443
Q ss_pred eccc-cCCCCCCccC--------------------------c---------------------------ccccc------
Q 045633 510 VARV-DGEYSSKACN--------------------------L---------------------------EGLGN------ 529 (794)
Q Consensus 510 ~~~~-~~~~~~~~~~--------------------------l---------------------------~~l~~------ 529 (794)
+... .+..+..... + ..+.+
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l 227 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEE
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccc
Confidence 2210 0000000000 0 00000
Q ss_pred ------------------cccCCCeeEEccccCCCChhhhhhccc-----cCCCCCceEEEEecCCCCccccccc-cccC
Q 045633 530 ------------------LNHLRGFLRICGLGNVTAADEAKNAHL-----EKKKNLVHLILDFTKREDEDYEEAP-MWMN 585 (794)
Q Consensus 530 ------------------L~~L~~~l~~~~~~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~p-~~~~ 585 (794)
..+|+ .+.+....-.. .....+ ..+++|+.++++.+.. .+| .++.
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~----~~p~~~~~~~~~~l~~L~~l~l~~n~~------~~p~~~~~ 296 (520)
T 2z7x_B 228 NNIETTWNSFIRILQLVWHTTVW-YFSISNVKLQG----QLDFRDFDYSGTSLKALSIHQVVSDVF------GFPQSYIY 296 (520)
T ss_dssp EEEEEEHHHHHHHHHHHHTSSCS-EEEEEEEEEES----CCCCCCCCCCSCCCCEEEEEEEEECCC------CSCTHHHH
T ss_pred cccccCHHHHHHHHHHhhhCccc-EEEeecccccC----ccccchhhcccccCceeEeccccccce------ecchhhhh
Confidence 01344 44443321100 111222 5566777777777653 122 0000
Q ss_pred cc----------hhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCC--cCCC-CCCCC
Q 045633 586 EE----------NEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCE--IMPP-LGKLP 652 (794)
Q Consensus 586 ~~----------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~--~l~~-l~~L~ 652 (794)
.. ..............+++|+.|++++|...... |.++..+++|+.|++++|.... .+|. ++.++
T Consensus 297 ~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~ 374 (520)
T 2z7x_B 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV--FENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374 (520)
T ss_dssp HHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT--TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT
T ss_pred cccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhh--hhhhccCCCCCEEEccCCccCccccchHHHhhCC
Confidence 00 00000000000145667777777777665532 5666677777777777774322 2222 56677
Q ss_pred CcceeeecccccceEeCcc-cccCcccCCCccccccC-CCccccC-CccceeeccccccccccccCCCCccCCCcccEEe
Q 045633 653 SLEILRIAEMVSVKKVGDE-FLGIGIRDHNHIHGTFS-SSSVVAF-PKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLM 729 (794)
Q Consensus 653 ~L~~L~l~~~~~l~~~~~~-~~~~~~l~~~~l~~~~~-~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~ 729 (794)
+|+.|+++++.....+|.. +.....++.+++++..- ......+ ++|+.|+++++ ++..++ ..+..+++|+.|+
T Consensus 375 ~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip---~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIP---KQVVKLEALQELN 450 (520)
T ss_dssp TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCC---GGGGGCTTCCEEE
T ss_pred CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccc---hhhhcCCCCCEEE
Confidence 7777777765433325543 33334444444444221 1111222 46666666663 444332 2233566777777
Q ss_pred eccCccCcCCCcC-ccCCCCccEEEeccCcc
Q 045633 730 IFSCEKLKSLPDQ-LLRSTTLESLEIGEAPI 759 (794)
Q Consensus 730 l~~c~~l~~ip~~-~~~l~~L~~L~l~~~~~ 759 (794)
+++| .++.+|.. +..+++|++|++++|+.
T Consensus 451 L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 451 VASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 7766 56666665 55666777777776664
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=8.6e-23 Score=216.03 Aligned_cols=298 Identities=20% Similarity=0.203 Sum_probs=188.2
Q ss_pred cCcceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCc
Q 045633 355 QEKLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENL 434 (794)
Q Consensus 355 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l 434 (794)
.+.++.+.+.++....++ .+..+++|++|+++++.. .. ++. +..+++|++|++++|. +..+| .+..+
T Consensus 43 l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i-----~~-~~~-~~~l~~L~~L~L~~n~----i~~~~-~~~~l 109 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQI-----TD-ISP-LSNLVKLTNLYIGTNK----ITDIS-ALQNL 109 (347)
T ss_dssp HTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCC-----CC-CGG-GTTCTTCCEEECCSSC----CCCCG-GGTTC
T ss_pred cccccEEEEeCCccccch-hhhhcCCccEEEccCCcc-----cc-chh-hhcCCcCCEEEccCCc----ccCch-HHcCC
Confidence 445666666666555443 355666777777766621 11 222 5666677777777666 44443 36666
Q ss_pred cCCcEEeccC--CCccCccccCCCccceec---CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCceE
Q 045633 435 IHLRYLQLSS--VEELPETCCELLNLQTLD---CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFT 509 (794)
Q Consensus 435 ~~L~~L~L~~--~~~lp~~i~~L~~L~~L~---~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~ 509 (794)
++|++|++++ +..+|. +.++.+|++|+ |..+..++ .+..+++|++|+++++.+..++. +..+++|+.|++
T Consensus 110 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l-- 184 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSL-- 184 (347)
T ss_dssp TTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEEC--
T ss_pred CcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEc--
Confidence 7777777766 555554 66666666666 22333333 36666666666666666655543 555555555542
Q ss_pred eccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchh
Q 045633 510 VARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENE 589 (794)
Q Consensus 510 ~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~ 589 (794)
.... .... ..+..+++|+.|++++|....
T Consensus 185 ------------------------------~~n~-l~~~-----~~~~~l~~L~~L~l~~n~l~~--------------- 213 (347)
T 4fmz_A 185 ------------------------------NYNQ-IEDI-----SPLASLTSLHYFTAYVNQITD--------------- 213 (347)
T ss_dssp ------------------------------TTSC-CCCC-----GGGGGCTTCCEEECCSSCCCC---------------
T ss_pred ------------------------------cCCc-cccc-----ccccCCCccceeecccCCCCC---------------
Confidence 2110 0000 014456778888888776541
Q ss_pred HHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeC
Q 045633 590 AKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVG 669 (794)
Q Consensus 590 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~ 669 (794)
...+..+++|+.|++++|..... |. +..+++|+.|++++| .+..++.+..+++|+.|++++|. ++.++
T Consensus 214 ------~~~~~~~~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~ 281 (347)
T 4fmz_A 214 ------ITPVANMTRLNSLKIGNNKITDL---SP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDIS 281 (347)
T ss_dssp ------CGGGGGCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG
T ss_pred ------CchhhcCCcCCEEEccCCccCCC---cc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCCh
Confidence 11255678899999988887665 44 778889999999988 45566778888999999998763 33332
Q ss_pred cccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCc
Q 045633 670 DEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTL 749 (794)
Q Consensus 670 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L 749 (794)
. +..+++|+.|+++++ .+.... +..+..+++|+.|++++|+ ++.++. +..+++|
T Consensus 282 ~---------------------~~~l~~L~~L~L~~n-~l~~~~--~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L 335 (347)
T 4fmz_A 282 V---------------------LNNLSQLNSLFLNNN-QLGNED--MEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKM 335 (347)
T ss_dssp G---------------------GGGCTTCSEEECCSS-CCCGGG--HHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTC
T ss_pred h---------------------hcCCCCCCEEECcCC-cCCCcC--hhHhhccccCCEEEccCCc-cccccC-hhhhhcc
Confidence 1 457888999999886 343332 2234578899999999994 777766 7778999
Q ss_pred cEEEeccCcc
Q 045633 750 ESLEIGEAPI 759 (794)
Q Consensus 750 ~~L~l~~~~~ 759 (794)
++|++++|+.
T Consensus 336 ~~L~l~~N~i 345 (347)
T 4fmz_A 336 DSADFANQVI 345 (347)
T ss_dssp SEESSSCC--
T ss_pred ceeehhhhcc
Confidence 9999999874
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.4e-22 Score=223.11 Aligned_cols=361 Identities=16% Similarity=0.145 Sum_probs=219.5
Q ss_pred ccCcceEEEEEecccccC-cccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-Cccc
Q 045633 354 CQEKLRHLTLMLGLRAKF-PVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGL 431 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i 431 (794)
.+..+++|++..+.+... +..+..+++|++|+++++.. .....+..|.++++|++|++++|. +..+ |..+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~----~~~i~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~ 99 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP----GLVIRNNTFRGLSSLIILKLDYNQ----FLQLETGAF 99 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST----TCEECTTTTTTCTTCCEEECTTCT----TCEECTTTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc----cceECcccccccccCCEEeCCCCc----cCccChhhc
Confidence 456788888888777664 55677888888888887721 112234557788888888888888 4444 6778
Q ss_pred cCccCCcEEeccC--CCc-cCcc--ccCCCccceec--CcCCCcc-Ccc-cccccCCceeEecccccccCC-CCCCCC--
Q 045633 432 ENLIHLRYLQLSS--VEE-LPET--CCELLNLQTLD--CLSLKRL-PQG-IGKLINLRHLIFDVFGVDYVP-NGFERL-- 499 (794)
Q Consensus 432 ~~l~~L~~L~L~~--~~~-lp~~--i~~L~~L~~L~--~~~l~~l-p~~-~~~L~~L~~L~l~~~~l~~lp-~~i~~l-- 499 (794)
+++++|++|+|++ +.. +|.. ++++.+|++|+ .+.+..+ |.. ++++++|++|+++.|.+..++ ..+..+
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 8888888888887 543 3444 77888888888 4556665 444 778888888888887777653 445444
Q ss_pred CCCCccCceEeccccCCCCC--CccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccc
Q 045633 500 TGLRTLSGFTVARVDGEYSS--KACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDY 577 (794)
Q Consensus 500 ~~L~~L~~~~~~~~~~~~~~--~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 577 (794)
.+|+.|++..... ...... .......+..+++|+ .+++....- ...............+|+.|+++.+......+
T Consensus 180 ~~L~~L~l~~n~l-~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 180 KHFTLLRLSSITL-QDMNEYWLGWEKCGNPFKNTSIT-TLDLSGNGF-KESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp CEEEEEECTTCBC-TTCSTTCTTHHHHCCTTTTCEEE-EEECTTSCC-CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred ccccccccccCcc-cccchhhccccccccccccceee-eEecCCCcc-cccchhhhhccccccceeeEeecccccccccc
Confidence 3444444222111 000000 000001111223333 444433211 11100011111223567777776654321100
Q ss_pred --cccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCC-CCCCCCCc
Q 045633 578 --EEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMP-PLGKLPSL 654 (794)
Q Consensus 578 --~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~-~l~~L~~L 654 (794)
..++.... ..... ...++|+.|++++|...... |.++..+++|+.|++++|......| .++.+++|
T Consensus 257 ~~~~~~~~~~--------~~~~~-~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 257 GHTNFKDPDN--------FTFKG-LEASGVKTCDLSKSKIFALL--KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp TCCSSCCCCT--------TTTGG-GTTSCCCEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred chhhhccCcc--------ccccc-ccccCceEEEecCccccccc--hhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 00000000 00000 12367888888888877653 6778888899999998885444434 37888899
Q ss_pred ceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCc
Q 045633 655 EILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCE 734 (794)
Q Consensus 655 ~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 734 (794)
+.|++++|. ++.++... +..+++|+.|+++++ ++..+. +..+..+++|+.|++++|
T Consensus 326 ~~L~Ls~N~-l~~~~~~~-------------------~~~l~~L~~L~Ls~N-~l~~~~--~~~~~~l~~L~~L~L~~N- 381 (455)
T 3v47_A 326 LKLNLSQNF-LGSIDSRM-------------------FENLDKLEVLDLSYN-HIRALG--DQSFLGLPNLKELALDTN- 381 (455)
T ss_dssp CEEECCSSC-CCEECGGG-------------------GTTCTTCCEEECCSS-CCCEEC--TTTTTTCTTCCEEECCSS-
T ss_pred CEEECCCCc-cCCcChhH-------------------hcCcccCCEEECCCC-cccccC--hhhccccccccEEECCCC-
Confidence 999998764 44443322 467899999999985 455443 344668999999999999
Q ss_pred cCcCCCcC-ccCCCCccEEEeccCccc
Q 045633 735 KLKSLPDQ-LLRSTTLESLEIGEAPIV 760 (794)
Q Consensus 735 ~l~~ip~~-~~~l~~L~~L~l~~~~~l 760 (794)
.++.+|.. +..+++|++|++++|+.-
T Consensus 382 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 382 QLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCCHhHhccCCcccEEEccCCCcc
Confidence 67788764 568999999999999863
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=2e-22 Score=216.77 Aligned_cols=301 Identities=16% Similarity=0.144 Sum_probs=212.8
Q ss_pred CCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC-ccccCccCCcEEeccC--CCccCc-cc
Q 045633 377 DAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-RGLENLIHLRYLQLSS--VEELPE-TC 452 (794)
Q Consensus 377 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~--~~~lp~-~i 452 (794)
.+++++.|.+.++ .+....+.+|..+++|++|++++|. +..+| ..++.+++|++|+|++ +..+|. .+
T Consensus 43 ~l~~l~~l~l~~~-----~l~~l~~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-----TMRKLPAALLDSFRQVELLNLNDLQ----IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGCCCSEEEEESC-----EESEECTHHHHHCCCCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCceEEEecCC-----chhhCChhHhcccccCcEEECCCCc----ccccChhhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 4577888888776 2333445567788888888888888 55554 4688888888888887 666654 47
Q ss_pred cCCCccceec--CcCCCccCcc-cccccCCceeEecccccccCC-CCCCCCCCCCccCceEeccccCCCCCCccCccccc
Q 045633 453 CELLNLQTLD--CLSLKRLPQG-IGKLINLRHLIFDVFGVDYVP-NGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLG 528 (794)
Q Consensus 453 ~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 528 (794)
+++.+|++|+ .+.+..+|.. ++++++|++|+++.|.+..++ ..++.+++|++|++..... .... +.
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~---~~ 183 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-------THVD---LS 183 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-------SBCC---GG
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-------Cccc---cc
Confidence 8888888888 5667788776 478888888888888887775 4478888888887543221 1111 23
Q ss_pred ccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEE
Q 045633 529 NLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESL 608 (794)
Q Consensus 529 ~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L 608 (794)
.+++|+ .+.+.... ...+....+|+.|++++|.... .| ...+++|+.|
T Consensus 184 ~l~~L~-~L~l~~n~---------l~~~~~~~~L~~L~l~~n~l~~-----~~-----------------~~~~~~L~~L 231 (390)
T 3o6n_A 184 LIPSLF-HANVSYNL---------LSTLAIPIAVEELDASHNSINV-----VR-----------------GPVNVELTIL 231 (390)
T ss_dssp GCTTCS-EEECCSSC---------CSEEECCSSCSEEECCSSCCCE-----EE-----------------CCCCSSCCEE
T ss_pred cccccc-eeeccccc---------ccccCCCCcceEEECCCCeeee-----cc-----------------ccccccccEE
Confidence 334444 44443211 1123445688999999887541 11 1234789999
Q ss_pred EEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeecccccceEeCcccccCcccCCCcccccc
Q 045633 609 NITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTF 687 (794)
Q Consensus 609 ~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~ 687 (794)
++++|.... +.++..+++|+.|++++|......|. ++.+++|+.|+++++. ++.++..
T Consensus 232 ~l~~n~l~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---------------- 290 (390)
T 3o6n_A 232 KLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY---------------- 290 (390)
T ss_dssp ECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS----------------
T ss_pred ECCCCCCcc----cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc----------------
Confidence 999988765 45788999999999999954444343 8889999999999854 5555432
Q ss_pred CCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCccc
Q 045633 688 SSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPIV 760 (794)
Q Consensus 688 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~l 760 (794)
...+++|+.|+++++ ++..++. .+..+++|+.|++++| .++.+| +..+++|++|++++|+.-
T Consensus 291 ----~~~l~~L~~L~L~~n-~l~~~~~---~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 291 ----GQPIPTLKVLDLSHN-HLLHVER---NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ----SSCCTTCCEEECCSS-CCCCCGG---GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred ----cCCCCCCCEEECCCC-cceecCc---cccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCcc
Confidence 357899999999985 5655532 3457899999999999 577776 567899999999999863
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=2.1e-22 Score=213.09 Aligned_cols=302 Identities=17% Similarity=0.218 Sum_probs=203.9
Q ss_pred cCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCcccc
Q 045633 376 FDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCC 453 (794)
Q Consensus 376 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~ 453 (794)
..++++++|.+.++... .++. +..+++|++|++++|. +..+|. +..+++|++|++++ +..+| .+.
T Consensus 41 ~~l~~L~~L~l~~~~i~------~~~~-~~~~~~L~~L~l~~n~----i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~ 107 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA------SIQG-IEYLTNLEYLNLNGNQ----ITDISP-LSNLVKLTNLYIGTNKITDIS-ALQ 107 (347)
T ss_dssp HHHTTCSEEECCSSCCC------CCTT-GGGCTTCCEEECCSSC----CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred hhcccccEEEEeCCccc------cchh-hhhcCCccEEEccCCc----cccchh-hhcCCcCCEEEccCCcccCch-HHc
Confidence 45677777777766321 1222 5667777777777776 555555 67777777777776 55554 466
Q ss_pred CCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccccc
Q 045633 454 ELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLN 531 (794)
Q Consensus 454 ~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 531 (794)
++.+|++|+ .+.+..+|. +..+++|++|++++|.....+..+..+++|+.|+
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~------------------------- 161 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT------------------------- 161 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEE-------------------------
T ss_pred CCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEE-------------------------
Confidence 777777776 445556655 6667777777775553333333355555555554
Q ss_pred cCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEe
Q 045633 532 HLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNIT 611 (794)
Q Consensus 532 ~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 611 (794)
+....- ... ..+..+++|+.|++++|.... ...+..+++|+.|+++
T Consensus 162 -------l~~~~~-~~~-----~~~~~l~~L~~L~l~~n~l~~---------------------~~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 162 -------VTESKV-KDV-----TPIANLTDLYSLSLNYNQIED---------------------ISPLASLTSLHYFTAY 207 (347)
T ss_dssp -------CCSSCC-CCC-----GGGGGCTTCSEEECTTSCCCC---------------------CGGGGGCTTCCEEECC
T ss_pred -------ecCCCc-CCc-----hhhccCCCCCEEEccCCcccc---------------------cccccCCCccceeecc
Confidence 221110 000 015567899999999887542 1125668899999999
Q ss_pred ecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCc
Q 045633 612 GFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSS 691 (794)
Q Consensus 612 ~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~ 691 (794)
+|..... +. +..+++|+.|++++|. +..++.+..+++|+.|++++|. ++.++.
T Consensus 208 ~n~l~~~---~~-~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~--------------------- 260 (347)
T 4fmz_A 208 VNQITDI---TP-VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQ-ISDINA--------------------- 260 (347)
T ss_dssp SSCCCCC---GG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGG---------------------
T ss_pred cCCCCCC---ch-hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCc-cCCChh---------------------
Confidence 9887665 43 7889999999999994 5556668899999999999864 333321
Q ss_pred cccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCccccccccccCCCC
Q 045633 692 VVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPIVEQNFKKDTGKD 771 (794)
Q Consensus 692 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 771 (794)
+..+++|+.|+++++ ++..++ .+..+++|+.|++++|+.....|..+..+++|++|++++|+. +... .
T Consensus 261 ~~~l~~L~~L~l~~n-~l~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~~------~ 328 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSN-QISDIS----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-TDIR------P 328 (347)
T ss_dssp GTTCTTCCEEECCSS-CCCCCG----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC-CCCG------G
T ss_pred HhcCCCcCEEEccCC-ccCCCh----hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc-cccc------C
Confidence 567899999999985 555553 255899999999999954445566678899999999999985 2221 2
Q ss_pred Cccccccceeeecccccc
Q 045633 772 WSKISHIPNILISGRYEQ 789 (794)
Q Consensus 772 ~~~~~~i~~~~~~~~~~~ 789 (794)
...+.++..+.+.+|.+.
T Consensus 329 ~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEESSSCC---
T ss_pred hhhhhccceeehhhhccc
Confidence 556778888888888764
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=5.2e-22 Score=224.15 Aligned_cols=389 Identities=16% Similarity=0.132 Sum_probs=233.1
Q ss_pred cccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccCccCCcEEeccC
Q 045633 366 GLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLIHLRYLQLSS 444 (794)
Q Consensus 366 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~ 444 (794)
+....+|..+. +++++|+++++. +....+..|.++++|++|++++|. +..+ |..|+++++|++|+|++
T Consensus 15 ~~l~~ip~~~~--~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 15 RSFTSIPSGLT--AAMKSLDLSFNK-----ITYIGHGDLRACANLQVLILKSSR----INTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSC-----CCEECSSTTSSCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTT
T ss_pred CccccccccCC--CCccEEECcCCc-----cCccChhhhhcCCcccEEECCCCC----cCccChhhccccccCCEEECCC
Confidence 34455666553 799999999983 333345568999999999999999 5565 46799999999999998
Q ss_pred --CCccCcc-ccCCCccceec--CcCCCc--cCcccccccCCceeEecccc-cccCC-CCCCCCCCCCccCceEeccccC
Q 045633 445 --VEELPET-CCELLNLQTLD--CLSLKR--LPQGIGKLINLRHLIFDVFG-VDYVP-NGFERLTGLRTLSGFTVARVDG 515 (794)
Q Consensus 445 --~~~lp~~-i~~L~~L~~L~--~~~l~~--lp~~~~~L~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~~~~~~~~~~ 515 (794)
+..+|.. ++++.+|++|+ .+.+.. .|..++++++|++|+++.|. +..+| ..++.+++|++|++..... .+
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~ 162 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-RN 162 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-CE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc-cc
Confidence 8888775 99999999999 556764 46779999999999998776 67777 5799999999998654332 11
Q ss_pred CCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccc-----cC-----
Q 045633 516 EYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMW-----MN----- 585 (794)
Q Consensus 516 ~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~-----~~----- 585 (794)
. ....+..+++|+ .+.+..... .... ...+..+++|+.|++++|......+...+.. +.
T Consensus 163 ~------~~~~l~~l~~L~-~L~l~~n~~-~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 163 Y------QSQSLKSIRDIH-HLTLHLSES-AFLL---EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231 (549)
T ss_dssp E------CTTTTTTCSEEE-EEEEECSBS-TTHH---HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred c------ChhhhhccccCc-eEecccCcc-cccc---hhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence 1 112233444444 555543221 1111 1123346777777777776553211100000 00
Q ss_pred --cchhHHHHHHhhhCC-----------------------------------------------------------CCCC
Q 045633 586 --EENEAKQEAICEALQ-----------------------------------------------------------APPN 604 (794)
Q Consensus 586 --~~~~~~~~~~~~~l~-----------------------------------------------------------~~~~ 604 (794)
.............+. ..++
T Consensus 232 ~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~ 311 (549)
T 2z81_A 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311 (549)
T ss_dssp SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTT
T ss_pred ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhccc
Confidence 000000001111111 1134
Q ss_pred ccEEEEeecCCCccCCCCchh-ccccCccEEeecCCCCCCcC----CCCCCCCCcceeeecccccceEeC---cccccCc
Q 045633 605 IESLNITGFEGRRLIFSSNWT-ASLDKLKRLDLAFCPRCEIM----PPLGKLPSLEILRIAEMVSVKKVG---DEFLGIG 676 (794)
Q Consensus 605 L~~L~l~~~~~~~~~~~p~~~-~~l~~L~~L~L~~~~~l~~l----~~l~~L~~L~~L~l~~~~~l~~~~---~~~~~~~ 676 (794)
|+.|++++|....+ |.++ ..+++|+.|++++|.....+ ..++.+++|+.|++++|. ++.++ ..+....
T Consensus 312 L~~L~l~~n~l~~i---p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 312 VKRITVENSKVFLV---PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLK 387 (549)
T ss_dssp CCEEEEESSCCCCC---CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCT
T ss_pred ceEEEeccCccccC---CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCC
Confidence 55566655554444 5554 46777888888777543322 125666777777777643 33332 1233344
Q ss_pred ccCCCcccccc---CCCccccCCccceeeccccccccccc-----------cCCCC----ccCCCcccEEeeccCccCcC
Q 045633 677 IRDHNHIHGTF---SSSSVVAFPKLEKLDLWIMLQLEEWD-----------FGKED----ITIMPQIKSLMIFSCEKLKS 738 (794)
Q Consensus 677 ~l~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~-----------~~~~~----~~~l~~L~~L~l~~c~~l~~ 738 (794)
.++.+++++.. .+..+..+++|++|+++++. +..++ ..... ...+++|+.|++++| .++.
T Consensus 388 ~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ 465 (549)
T 2z81_A 388 NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKT 465 (549)
T ss_dssp TCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSS
T ss_pred CCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCc
Confidence 44444444321 12223455666666665532 22211 11111 126788889999888 6778
Q ss_pred CCcCccCCCCccEEEeccCccccccccccCCCC-CccccccceeeeccccccC
Q 045633 739 LPDQLLRSTTLESLEIGEAPIVEQNFKKDTGKD-WSKISHIPNILISGRYEQG 790 (794)
Q Consensus 739 ip~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~ 790 (794)
+|. ...+++|++|++++|.. +. ..++ +..+..+..+.+.+|.+.+
T Consensus 466 ip~-~~~l~~L~~L~Ls~N~l-~~-----~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 466 LPD-ASLFPVLLVMKISRNQL-KS-----VPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CCC-GGGCTTCCEEECCSSCC-CC-----CCTTGGGGCTTCCEEECCSSCBCC
T ss_pred CCC-cccCccCCEEecCCCcc-CC-----cCHHHHhcCcccCEEEecCCCccC
Confidence 887 45688899999988854 22 1222 4567788888888776643
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.5e-21 Score=230.72 Aligned_cols=324 Identities=17% Similarity=0.113 Sum_probs=214.2
Q ss_pred EEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccCccCCc
Q 045633 360 HLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLIHLR 438 (794)
Q Consensus 360 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L~ 438 (794)
.+....+....+|. -.+++++|+++++. +....+..|.++++|++|++++|.. +..+ |..|+++++|+
T Consensus 8 ~~dcs~~~L~~vP~---lp~~l~~LdLs~N~-----i~~i~~~~~~~l~~L~~LdLs~n~~---~~~i~~~~f~~L~~L~ 76 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ---VLNTTERLLLSFNY-----IRTVTASSFPFLEQLQLLELGSQYT---PLTIDKEAFRNLPNLR 76 (844)
T ss_dssp EEEESCCCSSCCCS---SCTTCCEEEEESCC-----CCEECSSSCSSCCSCSEEEECTTCC---CCEECTTTTSSCTTCC
T ss_pred EEEccCCCCCCCCC---CCCCcCEEECCCCc-----CCccChhHCcccccCeEEeCCCCCC---ccccCHHHhcCCCCCC
Confidence 34444555666675 45899999999983 3344456689999999999999964 5566 77899999999
Q ss_pred EEeccC--CCcc-CccccCCCccceec--CcCCCc-cCcc--cccccCCceeEecccccccCC--CCCCCCCCCCccCce
Q 045633 439 YLQLSS--VEEL-PETCCELLNLQTLD--CLSLKR-LPQG--IGKLINLRHLIFDVFGVDYVP--NGFERLTGLRTLSGF 508 (794)
Q Consensus 439 ~L~L~~--~~~l-p~~i~~L~~L~~L~--~~~l~~-lp~~--~~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~~~ 508 (794)
+|+|++ +..+ |..+++|.+|++|+ .+.+.. +|.. ++++++|++|+++.|.+..++ ..++++++|++|++.
T Consensus 77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 999998 7666 78899999999999 455654 5554 899999999999999998764 468999999999854
Q ss_pred EeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCC------CCceEEEEecCCCCcccccccc
Q 045633 509 TVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKK------NLVHLILDFTKREDEDYEEAPM 582 (794)
Q Consensus 509 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~p~ 582 (794)
.... ... ....+..+.. ++|+ .+.+....-.. .....+..+. .|+.|++++|.........++.
T Consensus 157 ~N~i-~~~---~~~~l~~l~~-~~L~-~L~L~~n~l~~----~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 157 SNQI-FLV---CEHELEPLQG-KTLS-FFSLAANSLYS----RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp SSCC-CCC---CSGGGHHHHH-CSSC-CCEECCSBSCC----CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred CCcC-Cee---CHHHcccccC-Cccc-eEECCCCcccc----ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence 3221 111 1112222211 4454 55554321111 0111122222 4899999888644222111111
Q ss_pred ccCcc-----------------hhHHHHHHhhhCCC--CCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCC
Q 045633 583 WMNEE-----------------NEAKQEAICEALQA--PPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCE 643 (794)
Q Consensus 583 ~~~~~-----------------~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~ 643 (794)
.+... ...........+.. .++|+.|++++|...... |..+..+++|+.|+|++|....
T Consensus 227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN--SRVFETLKDLKVLNLAYNKINK 304 (844)
T ss_dssp TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC--SCCSSSCCCCCEEEEESCCCCE
T ss_pred hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC--hhhhhcCCCCCEEECCCCcCCC
Confidence 11000 00000011122322 378999999999877663 6778899999999999996544
Q ss_pred cCCC-CCCCCCcceeeecccccceEeCcccccCcccCCCccccc----cCCCccccCCccceeecccc
Q 045633 644 IMPP-LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGT----FSSSSVVAFPKLEKLDLWIM 706 (794)
Q Consensus 644 ~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~L~~L~l~~~ 706 (794)
..+. ++.+++|++|+++++.-....+..+.+...++.+++.++ .++..+..+++|+.|+++++
T Consensus 305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC
Confidence 4443 889999999999987543334666667777777777652 33344677899999999874
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=7.2e-22 Score=215.40 Aligned_cols=306 Identities=20% Similarity=0.180 Sum_probs=171.4
Q ss_pred cccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCcc
Q 045633 374 SIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPET 451 (794)
Q Consensus 374 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~ 451 (794)
.+..+++|++|+++++... . ++ .+..+++|++|++++|. +..+| ++.+++|++|++++ +..+|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~-----~-~~-~l~~l~~L~~L~Ls~n~----l~~~~--~~~l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSIT-----D-MT-GIEKLTGLTKLICTSNN----ITTLD--LSQNTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp EHHHHTTCCEEECCSSCCC-----C-CT-TGGGCTTCSEEECCSSC----CSCCC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred ChhHcCCCCEEEccCCCcc-----c-Ch-hhcccCCCCEEEccCCc----CCeEc--cccCCCCCEEECcCCCCceee--
Confidence 3445666666666665221 1 22 25666667777777666 44443 66666777777766 55554
Q ss_pred ccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccc
Q 045633 452 CCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGN 529 (794)
Q Consensus 452 i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 529 (794)
++++.+|++|+ .+.+..+| ++.+++|++|+++.|.+..+| ++.+++|+.|++..+..+. .+ .+..
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~--------~~-~~~~ 168 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKIT--------KL-DVTP 168 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCC--------CC-CCTT
T ss_pred cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccc--------cc-cccc
Confidence 66666677666 44555554 666667777777666666653 5666666666543322100 00 1233
Q ss_pred cccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEE
Q 045633 530 LNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLN 609 (794)
Q Consensus 530 L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 609 (794)
+++|+ .+++.... .... .+..+++|+.|++++|.... . .+..+++|+.|+
T Consensus 169 l~~L~-~L~ls~n~-l~~l------~l~~l~~L~~L~l~~N~l~~---------------------~-~l~~l~~L~~L~ 218 (457)
T 3bz5_A 169 QTQLT-TLDCSFNK-ITEL------DVSQNKLLNRLNCDTNNITK---------------------L-DLNQNIQLTFLD 218 (457)
T ss_dssp CTTCC-EEECCSSC-CCCC------CCTTCTTCCEEECCSSCCSC---------------------C-CCTTCTTCSEEE
T ss_pred CCcCC-EEECCCCc-ccee------ccccCCCCCEEECcCCcCCe---------------------e-ccccCCCCCEEE
Confidence 34444 44443221 1111 14556777777777776542 0 255667777777
Q ss_pred EeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCC
Q 045633 610 ITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSS 689 (794)
Q Consensus 610 l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~ 689 (794)
+++|....+ | +..+++|+.|++++|. +..+| .+.+++|+.|++++ +.++.+.-. ...+.+..+
T Consensus 219 Ls~N~l~~i---p--~~~l~~L~~L~l~~N~-l~~~~-~~~l~~L~~L~l~~-n~L~~L~l~--------~n~~~~~~~- 281 (457)
T 3bz5_A 219 CSSNKLTEI---D--VTPLTQLTYFDCSVNP-LTELD-VSTLSKLTTLHCIQ-TDLLEIDLT--------HNTQLIYFQ- 281 (457)
T ss_dssp CCSSCCSCC---C--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECTT-CCCSCCCCT--------TCTTCCEEE-
T ss_pred CcCCccccc---C--ccccCCCCEEEeeCCc-CCCcC-HHHCCCCCEEeccC-CCCCEEECC--------CCccCCccc-
Confidence 777776665 5 5677777777777773 34343 44455555555543 122222110 000111111
Q ss_pred CccccCCccceeeccccccccccccCCC-----CccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCcc
Q 045633 690 SSVVAFPKLEKLDLWIMLQLEEWDFGKE-----DITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 690 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~ 759 (794)
...+++|+.|++++++.+..++.... .+..+++|+.|++++| .++.++ +..+++|+.|++++|..
T Consensus 282 --~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 282 --AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp --CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCC
T ss_pred --ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCC
Confidence 24567777777777765554442111 1345678888888877 677764 66788888888887753
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=6.5e-22 Score=212.70 Aligned_cols=299 Identities=16% Similarity=0.134 Sum_probs=228.0
Q ss_pred ccCcceEEEEEecccccCccc-ccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-Cccc
Q 045633 354 CQEKLRHLTLMLGLRAKFPVS-IFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGL 431 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i 431 (794)
....++.+.+..+....+|.. +..+++|++|++.++. +....+..|..+++|++|++++|. +..+ |..+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-----IEEIDTYAFAYAHTIQKLYMGFNA----IRYLPPHVF 113 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCSSC----CCCCCTTTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-----ccccChhhccCCCCcCEEECCCCC----CCcCCHHHh
Confidence 457899999999988887776 4679999999999883 333445568999999999999999 6666 4568
Q ss_pred cCccCCcEEeccC--CCccCcc-ccCCCccceec--CcCCCccCc-ccccccCCceeEecccccccCCCCCCCCCCCCcc
Q 045633 432 ENLIHLRYLQLSS--VEELPET-CCELLNLQTLD--CLSLKRLPQ-GIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTL 505 (794)
Q Consensus 432 ~~l~~L~~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 505 (794)
+++++|++|++++ +..+|.. ++++.+|++|+ .+.+..++. .++.+++|++|+++.|.+..++ ++.+++|+.|
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L 191 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHA 191 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEE
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--ccccccccee
Confidence 9999999999998 9999987 58999999999 566777754 5899999999999999998874 6677888888
Q ss_pred CceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccC
Q 045633 506 SGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMN 585 (794)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~ 585 (794)
++.. ..+..+.....|+ .+.+.... .... .....++|+.|++++|....
T Consensus 192 ~l~~------------n~l~~~~~~~~L~-~L~l~~n~-l~~~------~~~~~~~L~~L~l~~n~l~~----------- 240 (390)
T 3o6n_A 192 NVSY------------NLLSTLAIPIAVE-ELDASHNS-INVV------RGPVNVELTILKLQHNNLTD----------- 240 (390)
T ss_dssp ECCS------------SCCSEEECCSSCS-EEECCSSC-CCEE------ECCCCSSCCEEECCSSCCCC-----------
T ss_pred eccc------------ccccccCCCCcce-EEECCCCe-eeec------cccccccccEEECCCCCCcc-----------
Confidence 6432 2233333334455 55554321 1111 11234789999999998652
Q ss_pred cchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeeccccc
Q 045633 586 EENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMVS 664 (794)
Q Consensus 586 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~~ 664 (794)
...+..+++|+.|++++|...... |..+..+++|+.|++++|. +..+|. ...+++|+.|++++|.
T Consensus 241 ----------~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~- 306 (390)
T 3o6n_A 241 ----------TAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH- 306 (390)
T ss_dssp ----------CGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSC-
T ss_pred ----------cHHHcCCCCccEEECCCCcCCCcC--hhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCc-
Confidence 135667899999999999887653 7788899999999999994 455554 6789999999999864
Q ss_pred ceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCc
Q 045633 665 VKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCE 734 (794)
Q Consensus 665 l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 734 (794)
++.+|.. +..+++|+.|++.++ .+..++ +..+++|+.|++++|+
T Consensus 307 l~~~~~~--------------------~~~l~~L~~L~L~~N-~i~~~~-----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 307 LLHVERN--------------------QPQFDRLENLYLDHN-SIVTLK-----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCGGG--------------------HHHHTTCSEEECCSS-CCCCCC-----CCTTCCCSEEECCSSC
T ss_pred ceecCcc--------------------ccccCcCCEEECCCC-ccceeC-----chhhccCCEEEcCCCC
Confidence 5555443 457899999999985 455553 3478999999999985
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=6.1e-22 Score=223.69 Aligned_cols=362 Identities=18% Similarity=0.104 Sum_probs=225.1
Q ss_pred ccccCcceEEEEEecccccCc-ccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCcc
Q 045633 352 STCQEKLRHLTLMLGLRAKFP-VSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRG 430 (794)
Q Consensus 352 ~~~~~~~r~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~ 430 (794)
......++.|++..+.+...+ ..+..+++|++|+++++. +....+..|.++++|++|++++|. +..+|..
T Consensus 48 ~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~Ls~N~----l~~lp~~ 118 (562)
T 3a79_B 48 KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-----IRSLDFHVFLFNQDLEYLDVSHNR----LQNISCC 118 (562)
T ss_dssp TTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-----CCEECTTTTTTCTTCCEEECTTSC----CCEECSC
T ss_pred CCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-----CCcCCHHHhCCCCCCCEEECCCCc----CCccCcc
Confidence 334578999999999988766 478899999999999983 444456778999999999999999 7788887
Q ss_pred ccCccCCcEEeccC--CCccC--ccccCCCccceec--CcCCCccCcccccccCC--ceeEeccccc--c-cCCCCCCCC
Q 045633 431 LENLIHLRYLQLSS--VEELP--ETCCELLNLQTLD--CLSLKRLPQGIGKLINL--RHLIFDVFGV--D-YVPNGFERL 499 (794)
Q Consensus 431 i~~l~~L~~L~L~~--~~~lp--~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L--~~L~l~~~~l--~-~lp~~i~~l 499 (794)
.+++|++|++++ +..+| ..++++.+|++|+ .+.+.. ..+..+++| ++|+++.|.+ . ..|..+..+
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCccccccc
Confidence 899999999998 77765 7899999999999 555554 346666666 9999987776 3 223333332
Q ss_pred --------------------------CCCCccCceEec----cccCCCCCCccCcccccc--------------------
Q 045633 500 --------------------------TGLRTLSGFTVA----RVDGEYSSKACNLEGLGN-------------------- 529 (794)
Q Consensus 500 --------------------------~~L~~L~~~~~~----~~~~~~~~~~~~l~~l~~-------------------- 529 (794)
++|+.|++.... .+.+ ....+..+..
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~----~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~ 270 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT----FLSELTRGPTLLNVTLQHIETTWKCSVKLF 270 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH----HHHHHHSCSSCEEEEEEEEEECHHHHHHHH
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH----HHHHHhccCcceEEEecCCcCcHHHHHHHH
Confidence 223322211100 0000 0000000000
Q ss_pred ----cccCCCeeEEccccC---CC------------------------ChhhhhhccccCCCCCceEEEEecCCCCcccc
Q 045633 530 ----LNHLRGFLRICGLGN---VT------------------------AADEAKNAHLEKKKNLVHLILDFTKREDEDYE 578 (794)
Q Consensus 530 ----L~~L~~~l~~~~~~~---~~------------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 578 (794)
..+|+ .+.+....- .. .........+-...+|+.|+++.+....
T Consensus 271 ~~~~~~~L~-~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~---- 345 (562)
T 3a79_B 271 QFFWPRPVE-YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH---- 345 (562)
T ss_dssp HHHTTSSEE-EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC----
T ss_pred Hhhhccccc-EEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc----
Confidence 00222 232222110 00 0000000001112346666666655331
Q ss_pred ccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCC----CCCCCCCc
Q 045633 579 EAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMP----PLGKLPSL 654 (794)
Q Consensus 579 ~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~----~l~~L~~L 654 (794)
......+++|+.|++++|...... |.++..+++|+.|++++| .+..++ .++.+++|
T Consensus 346 -----------------~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L 405 (562)
T 3a79_B 346 -----------------MVCPPSPSSFTFLNFTQNVFTDSV--FQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSL 405 (562)
T ss_dssp -----------------CCCCSSCCCCCEEECCSSCCCTTT--TTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTC
T ss_pred -----------------ccCccCCCCceEEECCCCccccch--hhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCC
Confidence 011146778888888888776642 777888888999999888 344443 27788888
Q ss_pred ceeeecccccceEeCcc-cccCcccCCCccccccC-CCccccC-CccceeeccccccccccccCCCCccCCCcccEEeec
Q 045633 655 EILRIAEMVSVKKVGDE-FLGIGIRDHNHIHGTFS-SSSVVAF-PKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIF 731 (794)
Q Consensus 655 ~~L~l~~~~~l~~~~~~-~~~~~~l~~~~l~~~~~-~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~ 731 (794)
+.|+++++.....+|.. +.+...++.+++++..- ......+ ++|+.|+++++ ++..++. .+..+++|+.|+++
T Consensus 406 ~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~---~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPK---DVTHLQALQELNVA 481 (562)
T ss_dssp CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCT---TTTSSCCCSEEECC
T ss_pred CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccCh---hhcCCCCCCEEECC
Confidence 99998876533336554 33445555555554322 1112334 58888888874 5665543 23377888888888
Q ss_pred cCccCcCCCcC-ccCCCCccEEEeccCccc
Q 045633 732 SCEKLKSLPDQ-LLRSTTLESLEIGEAPIV 760 (794)
Q Consensus 732 ~c~~l~~ip~~-~~~l~~L~~L~l~~~~~l 760 (794)
+| .++.+|.. +..+++|+.|++++||.-
T Consensus 482 ~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 482 SN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp SS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 88 67788876 677888888888888753
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.1e-21 Score=222.85 Aligned_cols=301 Identities=16% Similarity=0.149 Sum_probs=220.6
Q ss_pred CCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC-ccccCccCCcEEeccC--CCccCcc-c
Q 045633 377 DAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-RGLENLIHLRYLQLSS--VEELPET-C 452 (794)
Q Consensus 377 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~--~~~lp~~-i 452 (794)
.+++++.|.+.++ .+...++.+|..+++|++|++++|. +..+| ..|+.+++|++|+|++ +..+|.. +
T Consensus 49 ~l~~l~~l~l~~~-----~l~~lp~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFKNS-----TMRKLPAALLDSFRQVELLNLNDLQ----IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GGCCCSEEEESSC-----EESEECTHHHHHCCCCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCceEEEeeCC-----CCCCcCHHHHccCCCCcEEECCCCC----CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence 4678888888877 3444456668889999999999998 55664 4788999999999987 7777654 6
Q ss_pred cCCCccceec--CcCCCccCcc-cccccCCceeEecccccccCCC-CCCCCCCCCccCceEeccccCCCCCCccCccccc
Q 045633 453 CELLNLQTLD--CLSLKRLPQG-IGKLINLRHLIFDVFGVDYVPN-GFERLTGLRTLSGFTVARVDGEYSSKACNLEGLG 528 (794)
Q Consensus 453 ~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 528 (794)
+++.+|++|+ .+.+..+|.. ++++++|++|+++.|.+..+|. .++.+++|+.|++..+.- .... +.
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~~---~~ 189 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-------THVD---LS 189 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-------SBCC---GG
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-------CCcC---hh
Confidence 8999999998 5678888876 5889999999998888887764 588899999887543221 1111 23
Q ss_pred ccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEE
Q 045633 529 NLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESL 608 (794)
Q Consensus 529 ~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L 608 (794)
.+++|+ .+.+.... ...+....+|+.|++++|... .+|. ..+++|+.|
T Consensus 190 ~l~~L~-~L~l~~n~---------l~~l~~~~~L~~L~ls~n~l~-----~~~~-----------------~~~~~L~~L 237 (597)
T 3oja_B 190 LIPSLF-HANVSYNL---------LSTLAIPIAVEELDASHNSIN-----VVRG-----------------PVNVELTIL 237 (597)
T ss_dssp GCTTCS-EEECCSSC---------CSEEECCTTCSEEECCSSCCC-----EEEC-----------------SCCSCCCEE
T ss_pred hhhhhh-hhhcccCc---------cccccCCchhheeeccCCccc-----cccc-----------------ccCCCCCEE
Confidence 334444 44443211 112445578999999988754 1111 123689999
Q ss_pred EEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeecccccceEeCcccccCcccCCCcccccc
Q 045633 609 NITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTF 687 (794)
Q Consensus 609 ~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~ 687 (794)
++++|.... +.++..+++|+.|+|++|......|. ++.+++|+.|+|++|. +..+|..
T Consensus 238 ~L~~n~l~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~---------------- 296 (597)
T 3oja_B 238 KLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY---------------- 296 (597)
T ss_dssp ECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS----------------
T ss_pred ECCCCCCCC----ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc----------------
Confidence 999988654 57889999999999999965444443 8899999999999854 5555432
Q ss_pred CCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCccc
Q 045633 688 SSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPIV 760 (794)
Q Consensus 688 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~l 760 (794)
...+|+|+.|+++++ .+..++ ..+..+++|+.|++++| .+..+| +..+++|+.|++++|+.-
T Consensus 297 ----~~~l~~L~~L~Ls~N-~l~~i~---~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 297 ----GQPIPTLKVLDLSHN-HLLHVE---RNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp ----SSCCTTCCEEECCSS-CCCCCG---GGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred ----cccCCCCcEEECCCC-CCCccC---cccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 356899999999985 455543 33457899999999999 577776 566899999999999864
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=216.78 Aligned_cols=309 Identities=19% Similarity=0.196 Sum_probs=205.8
Q ss_pred eEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccCccCC
Q 045633 359 RHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLIHL 437 (794)
Q Consensus 359 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L 437 (794)
+.+.........+|..+ .++++.|+++++. +....+..|.++++|++|+|++|. +..+ |..|+++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~~L 82 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI--PTETRLLDLGKNR-----IKTLNQDEFASFPHLEELELNENI----VSAVEPGAFNNLFNL 82 (477)
T ss_dssp TEEECCSCCCSSCCSCC--CTTCSEEECCSSC-----CCEECTTTTTTCTTCCEEECTTSC----CCEECTTTTTTCTTC
T ss_pred CEEEeCCCCcCcCCCCC--CCCCcEEECCCCc-----cceECHhHccCCCCCCEEECCCCc----cCEeChhhhhCCccC
Confidence 34555555555566654 3688999998883 333345568889999999999998 5555 7788899999
Q ss_pred cEEeccC--CCccCcc-ccCCCccceec--CcCCCcc-CcccccccCCceeEecccccccCC-CCCCCCCCCCccCceEe
Q 045633 438 RYLQLSS--VEELPET-CCELLNLQTLD--CLSLKRL-PQGIGKLINLRHLIFDVFGVDYVP-NGFERLTGLRTLSGFTV 510 (794)
Q Consensus 438 ~~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~l-p~~~~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~~~~~ 510 (794)
++|+|++ +..+|.. +.++.+|++|+ .+.+..+ |..+..+++|++|+++.|.+..++ ..+..+++|+.|++..+
T Consensus 83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 9999987 8888864 68889999998 4556655 456888999999999888887764 56778888887763321
Q ss_pred ccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhH
Q 045633 511 ARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEA 590 (794)
Q Consensus 511 ~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~ 590 (794)
.. .. + ....+..+++|+.|+++.|....
T Consensus 163 ~l------------~~------~------------------~~~~l~~l~~L~~L~l~~n~i~~---------------- 190 (477)
T 2id5_A 163 NL------------TS------I------------------PTEALSHLHGLIVLRLRHLNINA---------------- 190 (477)
T ss_dssp CC------------SS------C------------------CHHHHTTCTTCCEEEEESCCCCE----------------
T ss_pred cC------------cc------c------------------ChhHhcccCCCcEEeCCCCcCcE----------------
Confidence 10 00 0 11224456677777777766431
Q ss_pred HHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC--CCCCCCcceeeecccccceEe
Q 045633 591 KQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP--LGKLPSLEILRIAEMVSVKKV 668 (794)
Q Consensus 591 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~~L~l~~~~~l~~~ 668 (794)
.....+..+++|+.|++++|.....+ |.......+|+.|++++| .+..+|. ++.+++|+.|+++++. ++.+
T Consensus 191 ---~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 263 (477)
T 2id5_A 191 ---IRDYSFKRLYRLKVLEISHWPYLDTM--TPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTI 263 (477)
T ss_dssp ---ECTTCSCSCTTCCEEEEECCTTCCEE--CTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEE
T ss_pred ---eChhhcccCcccceeeCCCCcccccc--CcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCcc
Confidence 11234566777888888776654432 444444557888888877 3455553 6677788888887644 4444
Q ss_pred CcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcC-ccCCC
Q 045633 669 GDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQ-LLRST 747 (794)
Q Consensus 669 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~-~~~l~ 747 (794)
+... +..+++|+.|++.++ ++..+. +..+..+++|+.|++++| .++.+|.. +..++
T Consensus 264 ~~~~-------------------~~~l~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 320 (477)
T 2id5_A 264 EGSM-------------------LHELLRLQEIQLVGG-QLAVVE--PYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVG 320 (477)
T ss_dssp CTTS-------------------CTTCTTCCEEECCSS-CCSEEC--TTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGG
T ss_pred Chhh-------------------ccccccCCEEECCCC-ccceEC--HHHhcCcccCCEEECCCC-cCceeCHhHcCCCc
Confidence 4322 346777888887773 444432 334557788888888888 66666653 45677
Q ss_pred CccEEEeccCccc
Q 045633 748 TLESLEIGEAPIV 760 (794)
Q Consensus 748 ~L~~L~l~~~~~l 760 (794)
+|++|++++||..
T Consensus 321 ~L~~L~l~~N~l~ 333 (477)
T 2id5_A 321 NLETLILDSNPLA 333 (477)
T ss_dssp GCCEEECCSSCEE
T ss_pred ccCEEEccCCCcc
Confidence 8888888887753
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=6.8e-21 Score=220.76 Aligned_cols=179 Identities=14% Similarity=0.085 Sum_probs=93.9
Q ss_pred CccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC--CCCCCCcceeeecccccceEeCcccccCcccCCC
Q 045633 604 NIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP--LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHN 681 (794)
Q Consensus 604 ~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~ 681 (794)
+|+.|++++|...... |..+..+++|+.|++++|.....+|. +..+++|++|++++|......+..+.....++.+
T Consensus 382 ~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 382 PLHILNLTKNKISKIE--SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp CCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred cCceEECCCCCCCeEC--hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 4555555555444432 44555566666666666644333432 5556666666666554222223333333444444
Q ss_pred ccccc------cCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCc---------CccCC
Q 045633 682 HIHGT------FSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPD---------QLLRS 746 (794)
Q Consensus 682 ~l~~~------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~---------~~~~l 746 (794)
.+.+. ..+..+..+++|+.|+++++ ++..++ +..+..+++|+.|++++| .++.++. .+..+
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~--~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l 535 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANIN--DDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGL 535 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTC
T ss_pred hhccccccccccCCcccccCCCCCEEECCCC-CCCcCC--hhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCC
Confidence 44331 12233556666666666663 344332 223446667777777776 4544321 14556
Q ss_pred CCccEEEeccCccccccccccCCCCCccccccceeeeccccccCCCC
Q 045633 747 TTLESLEIGEAPIVEQNFKKDTGKDWSKISHIPNILISGRYEQGGPS 793 (794)
Q Consensus 747 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 793 (794)
++|++|++++|.. +.. ....+..+.++..+.+.+|.+.+-|.
T Consensus 536 ~~L~~L~L~~N~l-~~i----~~~~~~~l~~L~~L~Ls~N~l~~l~~ 577 (680)
T 1ziw_A 536 SHLHILNLESNGF-DEI----PVEVFKDLFELKIIDLGLNNLNTLPA 577 (680)
T ss_dssp TTCCEEECCSSCC-CCC----CTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCEEECCCCCC-CCC----CHHHcccccCcceeECCCCCCCcCCH
Confidence 7777777777643 111 11235567777777777777776653
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2.5e-21 Score=219.76 Aligned_cols=300 Identities=16% Similarity=0.130 Sum_probs=227.6
Q ss_pred ccCcceEEEEEecccccCccc-ccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC-ccc
Q 045633 354 CQEKLRHLTLMLGLRAKFPVS-IFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-RGL 431 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~i 431 (794)
....++.+.+..+....+|+. +..+++|++|+++++. +....+..|..+++|++|+|++|. +..+| ..|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-----IEEIDTYAFAYAHTIQKLYMGFNA----IRYLPPHVF 119 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCSSC----CCCCCTTTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-----CCCCChHHhcCCCCCCEEECCCCc----CCCCCHHHH
Confidence 356788899988888777765 4678999999999983 344455578999999999999999 66665 457
Q ss_pred cCccCCcEEeccC--CCccCcc-ccCCCccceec--CcCCCccCc-ccccccCCceeEecccccccCCCCCCCCCCCCcc
Q 045633 432 ENLIHLRYLQLSS--VEELPET-CCELLNLQTLD--CLSLKRLPQ-GIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTL 505 (794)
Q Consensus 432 ~~l~~L~~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 505 (794)
+++++|++|+|++ +..+|.. ++++.+|++|+ .+.+..+|. .++.+++|++|++++|.+..+| ++.+++|+.|
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L 197 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHA 197 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEE
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhh
Confidence 9999999999998 8899987 59999999999 556777654 5999999999999999998875 5667888888
Q ss_pred CceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccC
Q 045633 506 SGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMN 585 (794)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~ 585 (794)
++.. ..+..+.....|+ .+.+.... +... .....++|+.|++++|....
T Consensus 198 ~l~~------------n~l~~l~~~~~L~-~L~ls~n~-l~~~------~~~~~~~L~~L~L~~n~l~~----------- 246 (597)
T 3oja_B 198 NVSY------------NLLSTLAIPIAVE-ELDASHNS-INVV------RGPVNVELTILKLQHNNLTD----------- 246 (597)
T ss_dssp ECCS------------SCCSEEECCTTCS-EEECCSSC-CCEE------ECSCCSCCCEEECCSSCCCC-----------
T ss_pred hccc------------CccccccCCchhh-eeeccCCc-cccc------ccccCCCCCEEECCCCCCCC-----------
Confidence 6432 2333344444455 55554321 1111 01123689999999998652
Q ss_pred cchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeeccccc
Q 045633 586 EENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMVS 664 (794)
Q Consensus 586 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~~ 664 (794)
+..+..+++|+.|++++|...... |..+..+++|+.|+|++|. +..+|. .+.+++|+.|+|++|.
T Consensus 247 ----------~~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~- 312 (597)
T 3oja_B 247 ----------TAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH- 312 (597)
T ss_dssp ----------CGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSC-
T ss_pred ----------ChhhccCCCCCEEECCCCccCCCC--HHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCC-
Confidence 235667899999999999887763 7788999999999999994 455555 6779999999999864
Q ss_pred ceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCcc
Q 045633 665 VKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEK 735 (794)
Q Consensus 665 l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 735 (794)
+..+|.. +..+++|+.|+++++ .+..++ +..+++|+.|++++|+-
T Consensus 313 l~~i~~~--------------------~~~l~~L~~L~L~~N-~l~~~~-----~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 313 LLHVERN--------------------QPQFDRLENLYLDHN-SIVTLK-----LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCCCGGG--------------------HHHHTTCSEEECCSS-CCCCCC-----CCTTCCCSEEECCSSCE
T ss_pred CCccCcc--------------------cccCCCCCEEECCCC-CCCCcC-----hhhcCCCCEEEeeCCCC
Confidence 4455543 457899999999995 455443 34789999999999863
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=9.6e-21 Score=206.51 Aligned_cols=306 Identities=18% Similarity=0.120 Sum_probs=219.3
Q ss_pred hccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCC
Q 045633 404 FDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINL 479 (794)
Q Consensus 404 ~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L 479 (794)
+.++++|++|++++|. +..+| .++.+++|++|++++ +..+| ++++.+|++|+ .+.+..+| ++.+++|
T Consensus 38 ~~~l~~L~~L~Ls~n~----l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS----ITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKL 108 (457)
T ss_dssp HHHHTTCCEEECCSSC----CCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred hhHcCCCCEEEccCCC----cccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcC
Confidence 5678999999999999 66777 699999999999998 88886 89999999999 56788876 8999999
Q ss_pred ceeEecccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCC
Q 045633 480 RHLIFDVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKK 559 (794)
Q Consensus 480 ~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~ 559 (794)
++|+++.|.+..+| ++.+++|+.|++....- . .+ .+.++++|+ .+.+......... .+..+
T Consensus 109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l-~--------~l-~l~~l~~L~-~L~l~~n~~~~~~------~~~~l 169 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNTL-T--------EI-DVSHNTQLT-ELDCHLNKKITKL------DVTPQ 169 (457)
T ss_dssp CEEECCSSCCSCCC--CTTCTTCCEEECTTSCC-S--------CC-CCTTCTTCC-EEECTTCSCCCCC------CCTTC
T ss_pred CEEECCCCcCCeec--CCCCCcCCEEECCCCcc-c--------ee-ccccCCcCC-EEECCCCCccccc------ccccC
Confidence 99999999999986 88999999998543221 1 11 244556666 6766554332221 36678
Q ss_pred CCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCC
Q 045633 560 KNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFC 639 (794)
Q Consensus 560 ~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~ 639 (794)
++|+.|++++|.... . .+..+++|+.|++++|..... + +..+++|+.|++++|
T Consensus 170 ~~L~~L~ls~n~l~~---------------------l-~l~~l~~L~~L~l~~N~l~~~---~--l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 170 TQLTTLDCSFNKITE---------------------L-DVSQNKLLNRLNCDTNNITKL---D--LNQNIQLTFLDCSSN 222 (457)
T ss_dssp TTCCEEECCSSCCCC---------------------C-CCTTCTTCCEEECCSSCCSCC---C--CTTCTTCSEEECCSS
T ss_pred CcCCEEECCCCccce---------------------e-ccccCCCCCEEECcCCcCCee---c--cccCCCCCEEECcCC
Confidence 999999999997652 1 156788999999999987765 4 678899999999999
Q ss_pred CCCCcCCCCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCc
Q 045633 640 PRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDI 719 (794)
Q Consensus 640 ~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 719 (794)
. +..+| ++.+++|+.|+++++. ++.++.. ....+..+. -...+|+.|+++++..+..++.
T Consensus 223 ~-l~~ip-~~~l~~L~~L~l~~N~-l~~~~~~--~l~~L~~L~----------l~~n~L~~L~l~~n~~~~~~~~----- 282 (457)
T 3bz5_A 223 K-LTEID-VTPLTQLTYFDCSVNP-LTELDVS--TLSKLTTLH----------CIQTDLLEIDLTHNTQLIYFQA----- 282 (457)
T ss_dssp C-CSCCC-CTTCTTCSEEECCSSC-CSCCCCT--TCTTCCEEE----------CTTCCCSCCCCTTCTTCCEEEC-----
T ss_pred c-ccccC-ccccCCCCEEEeeCCc-CCCcCHH--HCCCCCEEe----------ccCCCCCEEECCCCccCCcccc-----
Confidence 4 55577 8889999999999754 4444321 111111111 1123556666666655554442
Q ss_pred cCCCcccEEeeccCccCcCCCcC--------ccCCCCccEEEeccCccccccccccCCCCCccccccceeeeccccccCC
Q 045633 720 TIMPQIKSLMIFSCEKLKSLPDQ--------LLRSTTLESLEIGEAPIVEQNFKKDTGKDWSKISHIPNILISGRYEQGG 791 (794)
Q Consensus 720 ~~l~~L~~L~l~~c~~l~~ip~~--------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 791 (794)
..+++|+.|++++|+.++.+|.. +...++|++|++++|.. +. -+..+..++..+.+.+|.+.+.
T Consensus 283 ~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l-~~-------l~l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL-TE-------LDVSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCC-SC-------CCCTTCTTCSEEECCSSCCCBC
T ss_pred cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcc-cc-------cccccCCcCcEEECCCCCCCCc
Confidence 36899999999999877777642 33456666666666643 11 1355667777888888888765
Q ss_pred C
Q 045633 792 P 792 (794)
Q Consensus 792 ~ 792 (794)
|
T Consensus 355 ~ 355 (457)
T 3bz5_A 355 S 355 (457)
T ss_dssp T
T ss_pred c
Confidence 5
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=5.4e-21 Score=210.36 Aligned_cols=328 Identities=16% Similarity=0.126 Sum_probs=225.5
Q ss_pred ccCcceEEEEEecccc-cC-cccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccc-cCcc
Q 045633 354 CQEKLRHLTLMLGLRA-KF-PVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIE-IPRG 430 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~-~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-lp~~ 430 (794)
....++.|.+..+... .+ +..+..+++|++|+++++. +....+..|.++++|++|++++|. +.. .|..
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~ 122 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-----FLQLETGAFNGLANLEVLTLTQCN----LDGAVLSG 122 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-----TCEECTTTTTTCTTCCEEECTTSC----CBTHHHHS
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCc-----cCccChhhccCcccCCEEeCCCCC----CCccccCc
Confidence 4567999999988764 33 4567889999999999983 344456678999999999999999 443 4444
Q ss_pred --ccCccCCcEEeccC--CCcc-Ccc-ccCCCccceec--CcCCCcc-Ccccccc--cCCceeEecccccccCCCC----
Q 045633 431 --LENLIHLRYLQLSS--VEEL-PET-CCELLNLQTLD--CLSLKRL-PQGIGKL--INLRHLIFDVFGVDYVPNG---- 495 (794)
Q Consensus 431 --i~~l~~L~~L~L~~--~~~l-p~~-i~~L~~L~~L~--~~~l~~l-p~~~~~L--~~L~~L~l~~~~l~~lp~~---- 495 (794)
++.+++|++|+|++ +..+ |.. +.++++|++|+ .+.+..+ |..+..+ .+|+.|+++.+.+..++..
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~ 202 (455)
T 3v47_A 123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202 (455)
T ss_dssp STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH
T ss_pred ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc
Confidence 88999999999998 7766 555 89999999999 5566655 4556666 6899999999988877643
Q ss_pred -----CCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCC------hhhhhhcccc--CCCCC
Q 045633 496 -----FERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTA------ADEAKNAHLE--KKKNL 562 (794)
Q Consensus 496 -----i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~------~~~~~~~~l~--~~~~L 562 (794)
+..+++|++|++..+.. .+. ....+.......+++ .+.+........ ........+. ..++|
T Consensus 203 ~~~~~~~~~~~L~~L~Ls~n~l-~~~---~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 277 (455)
T 3v47_A 203 EKCGNPFKNTSITTLDLSGNGF-KES---MAKRFFDAIAGTKIQ-SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277 (455)
T ss_dssp HHHCCTTTTCEEEEEECTTSCC-CHH---HHHHHHHHTTTCCEE-EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC
T ss_pred cccccccccceeeeEecCCCcc-ccc---chhhhhcccccccee-eEeeccccccccccchhhhccCcccccccccccCc
Confidence 33567788777433211 000 000011111113333 444332211100 0000001111 23689
Q ss_pred ceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCC
Q 045633 563 VHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRC 642 (794)
Q Consensus 563 ~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l 642 (794)
+.|++++|... ...+..+..+++|+.|++++|...... |..+..+++|+.|+|++|..
T Consensus 278 ~~L~l~~n~l~-------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l- 335 (455)
T 3v47_A 278 KTCDLSKSKIF-------------------ALLKSVFSHFTDLEQLTLAQNEINKID--DNAFWGLTHLLKLNLSQNFL- 335 (455)
T ss_dssp CEEECCSSCCC-------------------EECTTTTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCC-
T ss_pred eEEEecCcccc-------------------ccchhhcccCCCCCEEECCCCcccccC--hhHhcCcccCCEEECCCCcc-
Confidence 99999998754 122345778899999999999987763 66888999999999999954
Q ss_pred CcC-CC-CCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCcc
Q 045633 643 EIM-PP-LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDIT 720 (794)
Q Consensus 643 ~~l-~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 720 (794)
..+ +. ++.+++|+.|++++|. ++.++... +..+++|++|++++ ++++.++. ..+.
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------------------~~~l~~L~~L~L~~-N~l~~~~~--~~~~ 392 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNH-IRALGDQS-------------------FLGLPNLKELALDT-NQLKSVPD--GIFD 392 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSC-CCEECTTT-------------------TTTCTTCCEEECCS-SCCSCCCT--TTTT
T ss_pred CCcChhHhcCcccCCEEECCCCc-ccccChhh-------------------ccccccccEEECCC-CccccCCH--hHhc
Confidence 444 33 7889999999999865 44443221 56789999999998 46666543 3355
Q ss_pred CCCcccEEeeccCccCcCCC
Q 045633 721 IMPQIKSLMIFSCEKLKSLP 740 (794)
Q Consensus 721 ~l~~L~~L~l~~c~~l~~ip 740 (794)
.+++|+.|++++|+.....|
T Consensus 393 ~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCBCCCTT
T ss_pred cCCcccEEEccCCCcccCCC
Confidence 89999999999997655555
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.2e-20 Score=196.65 Aligned_cols=227 Identities=24% Similarity=0.278 Sum_probs=141.9
Q ss_pred cCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCce
Q 045633 406 QLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRH 481 (794)
Q Consensus 406 ~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~ 481 (794)
....++.|++++|. +..+|..++++++|++|+|++ +..+|..++++.+|++|+ .+.+..+|..++++++|++
T Consensus 79 ~~~~l~~L~L~~n~----l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVP----LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSC----CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred cccceeEEEccCCC----chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 45789999999999 778999899999999999987 667777777777777777 5566677777777777777
Q ss_pred eEecc-cccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCC
Q 045633 482 LIFDV-FGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKK 560 (794)
Q Consensus 482 L~l~~-~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ 560 (794)
|+++. +.+..+|..++... + ...+..++
T Consensus 155 L~L~~n~~~~~~p~~~~~~~--------------------------------~-------------------~~~~~~l~ 183 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTD--------------------------------A-------------------SGEHQGLV 183 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC----------------------------------------------------CCCEEEST
T ss_pred EECCCCCCccccChhHhhcc--------------------------------c-------------------hhhhccCC
Confidence 77744 33344443222100 0 00123344
Q ss_pred CCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCC
Q 045633 561 NLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCP 640 (794)
Q Consensus 561 ~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~ 640 (794)
+|+.|++++|... .+ +..+..+++|+.|++++|....+ |..+..+++|+.|++++|.
T Consensus 184 ~L~~L~L~~n~l~-----~l---------------p~~l~~l~~L~~L~L~~N~l~~l---~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 184 NLQSLRLEWTGIR-----SL---------------PASIANLQNLKSLKIRNSPLSAL---GPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp TCCEEEEEEECCC-----CC---------------CGGGGGCTTCCEEEEESSCCCCC---CGGGGGCTTCCEEECTTCT
T ss_pred CCCEEECcCCCcC-----cc---------------hHhhcCCCCCCEEEccCCCCCcC---chhhccCCCCCEEECcCCc
Confidence 5555555555432 11 12233445555555555554443 4445555555555555554
Q ss_pred CCCcCCC-CCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCc
Q 045633 641 RCEIMPP-LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDI 719 (794)
Q Consensus 641 ~l~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 719 (794)
....+|. ++ .+++|+.|++++|+.+..++ ..+
T Consensus 241 ~~~~~p~~~~--------------------------------------------~l~~L~~L~L~~n~~~~~~p---~~~ 273 (328)
T 4fcg_A 241 ALRNYPPIFG--------------------------------------------GRAPLKRLILKDCSNLLTLP---LDI 273 (328)
T ss_dssp TCCBCCCCTT--------------------------------------------CCCCCCEEECTTCTTCCBCC---TTG
T ss_pred chhhhHHHhc--------------------------------------------CCCCCCEEECCCCCchhhcc---hhh
Confidence 4444433 34 44555555555544443332 224
Q ss_pred cCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccC
Q 045633 720 TIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEA 757 (794)
Q Consensus 720 ~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~ 757 (794)
..+++|+.|++++|+.++.+|..+..+++|+.+++..+
T Consensus 274 ~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 47888999999998888889998888999999888755
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=2.9e-20 Score=214.08 Aligned_cols=421 Identities=16% Similarity=0.116 Sum_probs=237.9
Q ss_pred ccccccCcceEEEEEecccccCcc-cccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC
Q 045633 350 LTSTCQEKLRHLTLMLGLRAKFPV-SIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP 428 (794)
Q Consensus 350 ~~~~~~~~~r~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp 428 (794)
++...+..+++|++..+.+..+++ .+..+++|++|++++| .+....+++|.++++|++|+|++|+ +..+|
T Consensus 46 vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-----~i~~i~~~~f~~L~~L~~L~Ls~N~----l~~l~ 116 (635)
T 4g8a_A 46 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-----EIQTIEDGAYQSLSHLSTLILTGNP----IQSLA 116 (635)
T ss_dssp CCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-----CCCEECTTTTTTCTTCCEEECTTCC----CCEEC
T ss_pred cCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-----cCCCcChhHhcCCCCCCEEEccCCc----CCCCC
Confidence 344567789999999999888765 6888999999999998 3444456679999999999999999 77887
Q ss_pred c-cccCccCCcEEeccC--CCccCc-cccCCCccceec--CcCCCc--cCcccccccCCceeEecccccccCC-CCCCCC
Q 045633 429 R-GLENLIHLRYLQLSS--VEELPE-TCCELLNLQTLD--CLSLKR--LPQGIGKLINLRHLIFDVFGVDYVP-NGFERL 499 (794)
Q Consensus 429 ~-~i~~l~~L~~L~L~~--~~~lp~-~i~~L~~L~~L~--~~~l~~--lp~~~~~L~~L~~L~l~~~~l~~lp-~~i~~l 499 (794)
. .|+++.+|++|+|++ +..+|. .|++|.+|++|+ .+.+.. +|..++.+++|++|+++.|.+..++ ..+..+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 5 589999999999998 888886 489999999999 455654 5778899999999999999888764 344444
Q ss_pred CCCCccCceEe------ccccCCCCCC-----------c-------cCccccc---------------------------
Q 045633 500 TGLRTLSGFTV------ARVDGEYSSK-----------A-------CNLEGLG--------------------------- 528 (794)
Q Consensus 500 ~~L~~L~~~~~------~~~~~~~~~~-----------~-------~~l~~l~--------------------------- 528 (794)
.+++.+..... ..+....... . ..+..+.
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 44433221100 0000000000 0 0000000
Q ss_pred ccccCCCeeEEc--cccCC-----CChh--------------hhhhccccCCCCCceEEEEecCCCCccccccccccCcc
Q 045633 529 NLNHLRGFLRIC--GLGNV-----TAAD--------------EAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEE 587 (794)
Q Consensus 529 ~L~~L~~~l~~~--~~~~~-----~~~~--------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~ 587 (794)
.+..+. ..... ..... .... ......+.....++.|++..+.........++......
T Consensus 277 ~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~ 355 (635)
T 4g8a_A 277 GLCNLT-IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 355 (635)
T ss_dssp GGGGSE-EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEE
T ss_pred cccchh-hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcc
Confidence 000000 00000 00000 0000 00001122334556666655543211111111000000
Q ss_pred hhHHHHHHhhhCCCCCCccEEEEeecCCCccCCC-----------------------CchhccccCccEEeecCCCCCCc
Q 045633 588 NEAKQEAICEALQAPPNIESLNITGFEGRRLIFS-----------------------SNWTASLDKLKRLDLAFCPRCEI 644 (794)
Q Consensus 588 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-----------------------p~~~~~l~~L~~L~L~~~~~l~~ 644 (794)
..............+++|+.|+++++........ +..+..+++|+.+++..+.....
T Consensus 356 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp EESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST
T ss_pred cccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc
Confidence 0000000011122345566666655443221111 22233445555555554432222
Q ss_pred CC--CCCCCCCcceeeecccccceEeCcccccCcccCCCccccc-----cCCCccccCCccceeeccccccccccccCCC
Q 045633 645 MP--PLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGT-----FSSSSVVAFPKLEKLDLWIMLQLEEWDFGKE 717 (794)
Q Consensus 645 l~--~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 717 (794)
.+ .+..+++|+.++++.+......+..+.+...++.+.+.+. ..+..+..+++|+.|+|+++ +++.+. +.
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~--~~ 512 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLS--PT 512 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEEC--TT
T ss_pred ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcC--hH
Confidence 22 2556677777777754433333444445555666666542 23445678888999999885 566554 34
Q ss_pred CccCCCcccEEeeccCccCcCCCc-CccCCCCccEEEeccCccccccccccCCCCCccc-cccceeeecccccc
Q 045633 718 DITIMPQIKSLMIFSCEKLKSLPD-QLLRSTTLESLEIGEAPIVEQNFKKDTGKDWSKI-SHIPNILISGRYEQ 789 (794)
Q Consensus 718 ~~~~l~~L~~L~l~~c~~l~~ip~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~ 789 (794)
.+..+++|+.|++++| +++.++. .+..+++|++|++++|..-.- .......+ ..+..+.+++|.+.
T Consensus 513 ~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 513 AFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTS-----KKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBC-----CSSCTTCCCTTCCEEECTTCCBC
T ss_pred HHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCC-----CHHHHHhhhCcCCEEEeeCCCCc
Confidence 4668899999999998 6777654 467789999999999865211 11223344 56777888877653
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=5.9e-20 Score=203.17 Aligned_cols=295 Identities=18% Similarity=0.171 Sum_probs=218.6
Q ss_pred CCccceEEEcccCCCcccccc-CccccCccCCcEEeccC--CCcc-CccccCCCccceec--CcCCCccCcc-cccccCC
Q 045633 407 LTCLRALKIEDFGLGDKTIEI-PRGLENLIHLRYLQLSS--VEEL-PETCCELLNLQTLD--CLSLKRLPQG-IGKLINL 479 (794)
Q Consensus 407 ~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~--~~~l-p~~i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L 479 (794)
.+.+++|+|++|. +..+ |..|.++++|++|+|++ +..+ |..++++.+|++|+ .+.+..+|.. +.++++|
T Consensus 31 ~~~l~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 31 PTETRLLDLGKNR----IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp CTTCSEEECCSSC----CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCCcEEECCCCc----cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 3579999999999 6666 56789999999999998 7766 66799999999999 5678888765 7889999
Q ss_pred ceeEecccccccC-CCCCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccC
Q 045633 480 RHLIFDVFGVDYV-PNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEK 558 (794)
Q Consensus 480 ~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~ 558 (794)
++|+++.|.+..+ |..+..+++|+.|++... .+.. .....+..
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n------------~l~~------------------------~~~~~~~~ 150 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDN------------DLVY------------------------ISHRAFSG 150 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCT------------TCCE------------------------ECTTSSTT
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCC------------ccce------------------------eChhhccC
Confidence 9999988888876 456788888888763211 0000 01123566
Q ss_pred CCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecC
Q 045633 559 KKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAF 638 (794)
Q Consensus 559 ~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~ 638 (794)
+++|+.|++++|.... .| ...+..+++|+.|++++|...... +..+..+++|+.|++++
T Consensus 151 l~~L~~L~l~~n~l~~-----~~--------------~~~l~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTS-----IP--------------TEALSHLHGLIVLRLRHLNINAIR--DYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CTTCCEEEEESCCCSS-----CC--------------HHHHTTCTTCCEEEEESCCCCEEC--TTCSCSCTTCCEEEEEC
T ss_pred CCCCCEEECCCCcCcc-----cC--------------hhHhcccCCCcEEeCCCCcCcEeC--hhhcccCcccceeeCCC
Confidence 7889999999987541 11 234677899999999999887762 45678899999999999
Q ss_pred CCCCCcCCC-CCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCC
Q 045633 639 CPRCEIMPP-LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKE 717 (794)
Q Consensus 639 ~~~l~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 717 (794)
|..+..++. .....+|+.|++++|. ++.++... +..+++|+.|+++++ .+..+. +.
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~Ls~n-~l~~~~--~~ 266 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLA-------------------VRHLVYLRFLNLSYN-PISTIE--GS 266 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHH-------------------HTTCTTCCEEECCSS-CCCEEC--TT
T ss_pred CccccccCcccccCccccEEECcCCc-ccccCHHH-------------------hcCccccCeeECCCC-cCCccC--hh
Confidence 988877765 4556699999999864 55554322 457899999999985 455543 33
Q ss_pred CccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCccccccccccCCCCCccccccceeeeccccccC
Q 045633 718 DITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPIVEQNFKKDTGKDWSKISHIPNILISGRYEQG 790 (794)
Q Consensus 718 ~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 790 (794)
.+..+++|+.|++++|......|..+..+++|++|++++|.. +... ...+..+..+..+.+.+|.+..
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~----~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLE----ESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC-SCCC----GGGBSCGGGCCEEECCSSCEEC
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC-ceeC----HhHcCCCcccCEEEccCCCccC
Confidence 466899999999999954444477788899999999999954 2211 1224567788888888887654
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=5.8e-20 Score=200.13 Aligned_cols=354 Identities=17% Similarity=0.122 Sum_probs=198.6
Q ss_pred cCcceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCcc-------------ceEEEcccCCC
Q 045633 355 QEKLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCL-------------RALKIEDFGLG 421 (794)
Q Consensus 355 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~ 421 (794)
...++.+.+.++....+|..+..+++|++|+++++ .....+|..+..+.+| +.|++++|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n-----~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-- 82 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWS-----EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-- 82 (454)
T ss_dssp ------------------------CCHHHHHHHHH-----HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC--
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCC-----cccccCCcccccchhcchhhhhhhhccCCCEEEecCCc--
Confidence 45688888988888889999999999999999887 3444455556666654 999999999
Q ss_pred ccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCC
Q 045633 422 DKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFE 497 (794)
Q Consensus 422 ~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~ 497 (794)
+..+|.. .++|++|++++ +..+|..+ .+|++|+ .+.+..+|.. .++|++|+++.|.+..+| .++
T Consensus 83 --l~~lp~~---~~~L~~L~l~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~ 150 (454)
T 1jl5_A 83 --LSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQ 150 (454)
T ss_dssp --CSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCT
T ss_pred --cccCCCC---cCCCCEEEccCCcCCcccccc---CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccC
Confidence 6677762 47899999998 88888654 6788888 5567766642 268999999999999998 699
Q ss_pred CCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccc
Q 045633 498 RLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDY 577 (794)
Q Consensus 498 ~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 577 (794)
++++|++|++....- .+ +.. ...+|+ .+.+.... ... .. .+..+++|+.|++++|...
T Consensus 151 ~l~~L~~L~l~~N~l-~~--------lp~--~~~~L~-~L~L~~n~-l~~----l~-~~~~l~~L~~L~l~~N~l~---- 208 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSL-KK--------LPD--LPPSLE-FIAAGNNQ-LEE----LP-ELQNLPFLTAIYADNNSLK---- 208 (454)
T ss_dssp TCTTCCEEECCSSCC-SC--------CCC--CCTTCC-EEECCSSC-CSS----CC-CCTTCTTCCEEECCSSCCS----
T ss_pred CCCCCCEEECCCCcC-cc--------cCC--Cccccc-EEECcCCc-CCc----Cc-cccCCCCCCEEECCCCcCC----
Confidence 999999998544321 11 111 112444 55554321 111 11 4678899999999998754
Q ss_pred cccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCccee
Q 045633 578 EEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEIL 657 (794)
Q Consensus 578 ~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L 657 (794)
.+|. .+++|+.|++++|....+ |. +..+++|+.|++++|. +..+|.. +++|+.|
T Consensus 209 -~l~~------------------~~~~L~~L~l~~n~l~~l---p~-~~~l~~L~~L~l~~N~-l~~l~~~--~~~L~~L 262 (454)
T 1jl5_A 209 -KLPD------------------LPLSLESIVAGNNILEEL---PE-LQNLPFLTTIYADNNL-LKTLPDL--PPSLEAL 262 (454)
T ss_dssp -SCCC------------------CCTTCCEEECCSSCCSSC---CC-CTTCTTCCEEECCSSC-CSSCCSC--CTTCCEE
T ss_pred -cCCC------------------CcCcccEEECcCCcCCcc---cc-cCCCCCCCEEECCCCc-CCccccc--ccccCEE
Confidence 1221 135899999999988765 74 7889999999999984 4556653 4899999
Q ss_pred eecccccceEeCcccccCcccCCCccccccCCCccccCCccceeecccc-------------------ccccccccCCCC
Q 045633 658 RIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIM-------------------LQLEEWDFGKED 718 (794)
Q Consensus 658 ~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~-------------------~~l~~~~~~~~~ 718 (794)
++++|. ++.+|... ..++.+++++.....-....++|+.|+++++ +++..++ .
T Consensus 263 ~l~~N~-l~~l~~~~---~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp---~- 334 (454)
T 1jl5_A 263 NVRDNY-LTDLPELP---QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP---A- 334 (454)
T ss_dssp ECCSSC-CSCCCCCC---TTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCC---C-
T ss_pred ECCCCc-ccccCccc---CcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccc---c-
Confidence 999764 55565432 3344444443211110011134444444432 2232221 1
Q ss_pred ccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCccccccccccCCCCCccc-------------cccceeeecc
Q 045633 719 ITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPIVEQNFKKDTGKDWSKI-------------SHIPNILISG 785 (794)
Q Consensus 719 ~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-------------~~i~~~~~~~ 785 (794)
.+++|+.|++++| .++.+|. .+++|++|++++|+.-.- . .....+..+ .++..+.+.+
T Consensus 335 --~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l~~l-~--~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~ 405 (454)
T 1jl5_A 335 --LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPLREF-P--DIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405 (454)
T ss_dssp --CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSSC-C--CCCTTCCEEECCC-------------------
T ss_pred --cCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCCCcC-C--CChHHHHhhhhcccccccccccCcCCEEECCC
Confidence 3567777777777 5667776 367788888877754220 0 011222333 4566666777
Q ss_pred ccccCCC
Q 045633 786 RYEQGGP 792 (794)
Q Consensus 786 ~~~~~~~ 792 (794)
|.+.+.|
T Consensus 406 N~l~~~~ 412 (454)
T 1jl5_A 406 NPLREFP 412 (454)
T ss_dssp -------
T ss_pred CcCCccc
Confidence 7776655
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.4e-19 Score=189.80 Aligned_cols=136 Identities=22% Similarity=0.221 Sum_probs=79.1
Q ss_pred cceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccCcc
Q 045633 357 KLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLI 435 (794)
Q Consensus 357 ~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~ 435 (794)
.++.+.+..+....+|..+ .++++.|+++++. +....+..|.++++|++|++++|. +..+ |..+++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~-----i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNND-----ISELRKDDFKGLQHLYALVLVNNK----ISKIHEKAFSPLR 102 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSC----CCEECGGGSTTCT
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCc-----CCccCHhHhhCCCCCcEEECCCCc----cCccCHhHhhCcC
Confidence 4556666655555555544 3567777776662 222234446667777777777776 4444 55666777
Q ss_pred CCcEEeccC--CCccCccccCCCccceec--CcCCCccCcc-cccccCCceeEeccccccc---CCCCCCCCCCCCccC
Q 045633 436 HLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQG-IGKLINLRHLIFDVFGVDY---VPNGFERLTGLRTLS 506 (794)
Q Consensus 436 ~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~ 506 (794)
+|++|++++ +..+|..+. .+|++|+ .+.+..+|.. +..+++|++|++++|.+.. .|..+..+ +|+.|+
T Consensus 103 ~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 103 KLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp TCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred CCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 777777766 666666554 5666666 4455555543 5666666666666666542 23334444 455444
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=4.2e-19 Score=186.02 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=18.7
Q ss_pred CCcccEEeeccCccCc--CCCcCccCCCCccEEEeccC
Q 045633 722 MPQIKSLMIFSCEKLK--SLPDQLLRSTTLESLEIGEA 757 (794)
Q Consensus 722 l~~L~~L~l~~c~~l~--~ip~~~~~l~~L~~L~l~~~ 757 (794)
.++|+.|++++|+... ..|..+..+++|+.+++++|
T Consensus 292 ~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 4566666666665321 23344555666777766665
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=3.1e-19 Score=186.04 Aligned_cols=196 Identities=23% Similarity=0.384 Sum_probs=129.1
Q ss_pred hccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec---CcCCCccCccc-----
Q 045633 404 FDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD---CLSLKRLPQGI----- 473 (794)
Q Consensus 404 ~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~---~~~l~~lp~~~----- 473 (794)
+.++++|++|++++|. +..+|..++++++|++|+|++ +..+|..++++.+|++|+ |+.+..+|..+
T Consensus 100 l~~l~~L~~L~L~~n~----l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAG----LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp GGGGTTCSEEEEESSC----CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred hhhCCCCCEEECCCCC----ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence 3345555555555555 335555555555555555555 455555555555555555 34445555544
Q ss_pred ----ccccCCceeEecccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChh
Q 045633 474 ----GKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAAD 549 (794)
Q Consensus 474 ----~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~ 549 (794)
.++++|++|+++.|.+..+|..++.+++|+.|+
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~------------------------------------------- 212 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK------------------------------------------- 212 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEE-------------------------------------------
T ss_pred hhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEE-------------------------------------------
Confidence 448888888888777777776666665555554
Q ss_pred hhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhcccc
Q 045633 550 EAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLD 629 (794)
Q Consensus 550 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~ 629 (794)
+++|... . ++..+..+++|+.|++++|.....+ |.++..++
T Consensus 213 -----------------L~~N~l~-----~---------------l~~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~ 253 (328)
T 4fcg_A 213 -----------------IRNSPLS-----A---------------LGPAIHHLPKLEELDLRGCTALRNY--PPIFGGRA 253 (328)
T ss_dssp -----------------EESSCCC-----C---------------CCGGGGGCTTCCEEECTTCTTCCBC--CCCTTCCC
T ss_pred -----------------ccCCCCC-----c---------------CchhhccCCCCCEEECcCCcchhhh--HHHhcCCC
Confidence 3333211 0 1113445677888888877665553 78899999
Q ss_pred CccEEeecCCCCCCcCCC-CCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccc
Q 045633 630 KLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWI 705 (794)
Q Consensus 630 ~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~ 705 (794)
+|+.|+|++|.....+|. ++.+++|+.|++++|+.++.+|.. +..+++|+.+.+..
T Consensus 254 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~--------------------l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL--------------------IAQLPANCIILVPP 310 (328)
T ss_dssp CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG--------------------GGGSCTTCEEECCG
T ss_pred CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH--------------------HhhccCceEEeCCH
Confidence 999999999988888885 889999999999999988888765 45677777777653
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=2.1e-18 Score=187.86 Aligned_cols=317 Identities=19% Similarity=0.159 Sum_probs=172.8
Q ss_pred ceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCC
Q 045633 358 LRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHL 437 (794)
Q Consensus 358 ~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L 437 (794)
++++.+..+....+|.. .++|++|+++++.. .. ++. .+++|++|++++|. +..+|.. .++|
T Consensus 73 l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l-----~~-lp~---~~~~L~~L~l~~n~----l~~l~~~---~~~L 133 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL---PPHLESLVASCNSL-----TE-LPE---LPQSLKSLLVDNNN----LKALSDL---PPLL 133 (454)
T ss_dssp CSEEECTTSCCSCCCSC---CTTCSEEECCSSCC-----SS-CCC---CCTTCCEEECCSSC----CSCCCSC---CTTC
T ss_pred CCEEEecCCccccCCCC---cCCCCEEEccCCcC-----Cc-ccc---ccCCCcEEECCCCc----cCcccCC---CCCC
Confidence 34444444444433331 24566666655521 11 121 23556666666665 3333321 1456
Q ss_pred cEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCceEeccc
Q 045633 438 RYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTVARV 513 (794)
Q Consensus 438 ~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~ 513 (794)
++|++++ +..+| +++++.+|++|+ .+.+..+|..+ .+|++|++++|.+..+| .++++++|+.|++..+.-
T Consensus 134 ~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l- 207 (454)
T 1jl5_A 134 EYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL- 207 (454)
T ss_dssp CEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC-
T ss_pred CEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC-
Confidence 6666665 55555 466666666666 34455555432 35666666666666655 456666666655322111
Q ss_pred cCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHH
Q 045633 514 DGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQE 593 (794)
Q Consensus 514 ~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~ 593 (794)
. .+... ..+|+ .+.+.... ... .. .+..+++|+.|++++|.... +|.
T Consensus 208 ~--------~l~~~--~~~L~-~L~l~~n~-l~~----lp-~~~~l~~L~~L~l~~N~l~~-----l~~----------- 254 (454)
T 1jl5_A 208 K--------KLPDL--PLSLE-SIVAGNNI-LEE----LP-ELQNLPFLTTIYADNNLLKT-----LPD----------- 254 (454)
T ss_dssp S--------SCCCC--CTTCC-EEECCSSC-CSS----CC-CCTTCTTCCEEECCSSCCSS-----CCS-----------
T ss_pred C--------cCCCC--cCccc-EEECcCCc-CCc----cc-ccCCCCCCCEEECCCCcCCc-----ccc-----------
Confidence 0 00000 01233 34433221 111 11 25677899999999887541 221
Q ss_pred HHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccc
Q 045633 594 AICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFL 673 (794)
Q Consensus 594 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~ 673 (794)
.+++|+.|++++|....+ |.+ +++|+.|++++|. +..+|.+. ++|+.|+++++. ++.++..
T Consensus 255 -------~~~~L~~L~l~~N~l~~l---~~~---~~~L~~L~ls~N~-l~~l~~~~--~~L~~L~l~~N~-l~~i~~~-- 315 (454)
T 1jl5_A 255 -------LPPSLEALNVRDNYLTDL---PEL---PQSLTFLDVSENI-FSGLSELP--PNLYYLNASSNE-IRSLCDL-- 315 (454)
T ss_dssp -------CCTTCCEEECCSSCCSCC---CCC---CTTCCEEECCSSC-CSEESCCC--TTCCEEECCSSC-CSEECCC--
T ss_pred -------cccccCEEECCCCccccc---Ccc---cCcCCEEECcCCc-cCcccCcC--CcCCEEECcCCc-CCcccCC--
Confidence 247899999999988776 654 4899999999994 55555432 799999999754 5555432
Q ss_pred cCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCc--CCCcCccCC-----
Q 045633 674 GIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLK--SLPDQLLRS----- 746 (794)
Q Consensus 674 ~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~ip~~~~~l----- 746 (794)
...++.++++++....-...+++|+.|+++++ ++..++. .+++|+.|++++|+... .+|..+..+
T Consensus 316 -~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~l~~lp~------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~ 387 (454)
T 1jl5_A 316 -PPSLEELNVSNNKLIELPALPPRLERLIASFN-HLAEVPE------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSH 387 (454)
T ss_dssp -CTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-
T ss_pred -cCcCCEEECCCCccccccccCCcCCEEECCCC-ccccccc------hhhhccEEECCCCCCCcCCCChHHHHhhhhccc
Confidence 13455555555332222234689999999985 5665542 47899999999995444 477777666
Q ss_pred --------CCccEEEeccCcc
Q 045633 747 --------TTLESLEIGEAPI 759 (794)
Q Consensus 747 --------~~L~~L~l~~~~~ 759 (794)
++|+.|++++|+.
T Consensus 388 ~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 388 LAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp ---------------------
T ss_pred ccccccccCcCCEEECCCCcC
Confidence 8899999999976
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.1e-18 Score=182.89 Aligned_cols=284 Identities=14% Similarity=0.192 Sum_probs=174.5
Q ss_pred ccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCc-cccCCCccceec--CcCCCcc-CcccccccCCcee
Q 045633 409 CLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPE-TCCELLNLQTLD--CLSLKRL-PQGIGKLINLRHL 482 (794)
Q Consensus 409 ~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~-~i~~L~~L~~L~--~~~l~~l-p~~~~~L~~L~~L 482 (794)
++++++++++. +..+|..+. ++|++|++++ +..+|. .++++.+|++|+ .+.+..+ |..++.+++|++|
T Consensus 32 ~l~~l~~~~~~----l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLG----LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSC----CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCC----ccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 46666666665 555555443 4666666665 555554 466666666666 3445555 5567777777777
Q ss_pred EecccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCC
Q 045633 483 IFDVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNL 562 (794)
Q Consensus 483 ~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L 562 (794)
+++.|.+..+|..+. ++|++|++... .+.. .....+..+++|
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n------------~l~~------------------------~~~~~~~~l~~L 147 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHEN------------EITK------------------------VRKSVFNGLNQM 147 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCSS------------CCCB------------------------BCHHHHTTCTTC
T ss_pred ECCCCcCCccChhhc--ccccEEECCCC------------cccc------------------------cCHhHhcCCccc
Confidence 777777776665544 45555542110 0000 011224455667
Q ss_pred ceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCC
Q 045633 563 VHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRC 642 (794)
Q Consensus 563 ~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l 642 (794)
+.|++++|.... .......+..+++|+.|++++|....+ |..+. ++|+.|++++|...
T Consensus 148 ~~L~l~~n~l~~-----------------~~~~~~~~~~l~~L~~L~l~~n~l~~l---~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 148 IVVELGTNPLKS-----------------SGIENGAFQGMKKLSYIRIADTNITTI---PQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CEEECCSSCCCG-----------------GGBCTTGGGGCTTCCEEECCSSCCCSC---CSSCC--TTCSEEECTTSCCC
T ss_pred cEEECCCCcCCc-----------------cCcChhhccCCCCcCEEECCCCccccC---Ccccc--ccCCEEECCCCcCC
Confidence 777777665431 001123455677888888888877665 65543 78899999888533
Q ss_pred CcCC-CCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccC
Q 045633 643 EIMP-PLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITI 721 (794)
Q Consensus 643 ~~l~-~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 721 (794)
...+ .++.+++|+.|+++++. ++.++... +..+++|+.|+++++ ++..++ ..+..
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-------------------~~~l~~L~~L~L~~N-~l~~lp---~~l~~ 261 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNS-ISAVDNGS-------------------LANTPHLRELHLNNN-KLVKVP---GGLAD 261 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSC-CCEECTTT-------------------GGGSTTCCEEECCSS-CCSSCC---TTTTT
T ss_pred ccCHHHhcCCCCCCEEECCCCc-CceeChhh-------------------ccCCCCCCEEECCCC-cCccCC---hhhcc
Confidence 3323 37788899999998754 44443321 457889999999885 555543 34568
Q ss_pred CCcccEEeeccCccCcCCCcCcc-------CCCCccEEEeccCccccccccccCCCCCccccccceeeeccc
Q 045633 722 MPQIKSLMIFSCEKLKSLPDQLL-------RSTTLESLEIGEAPIVEQNFKKDTGKDWSKISHIPNILISGR 786 (794)
Q Consensus 722 l~~L~~L~l~~c~~l~~ip~~~~-------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 786 (794)
+++|+.|++++| .++.+|.... ..++|+.|++.+||.-...+ ....+....++..+.+.+|
T Consensus 262 l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i---~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 262 HKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI---QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGS---CGGGGTTCCCGGGEEC---
T ss_pred CCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccccccc---CccccccccceeEEEeccc
Confidence 899999999999 6888775322 24789999999999632222 1134555667777776655
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=1.2e-19 Score=188.00 Aligned_cols=244 Identities=18% Similarity=0.175 Sum_probs=185.5
Q ss_pred CcceEEEEEecccc---cCcccccCCCCccEEEEcc-cCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccc
Q 045633 356 EKLRHLTLMLGLRA---KFPVSIFDAKKLRSLILFD-VTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGL 431 (794)
Q Consensus 356 ~~~r~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i 431 (794)
.+++.+.+..+... .+|..+..+++|++|++++ + .....+|..|.++++|++|++++|.+ ...+|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n-----~l~~~~p~~l~~l~~L~~L~Ls~n~l---~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-----NLVGPIPPAIAKLTQLHYLYITHTNV---SGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET-----TEESCCCGGGGGCTTCSEEEEEEECC---EEECCGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC-----cccccCChhHhcCCCCCEEECcCCee---CCcCCHHH
Confidence 57888888888776 4777888899999999985 4 23334566688899999999999883 23678888
Q ss_pred cCccCCcEEeccC--CC-ccCccccCCCccceec--CcCCC-ccCccccccc-CCceeEecccccc-cCCCCCCCCCCCC
Q 045633 432 ENLIHLRYLQLSS--VE-ELPETCCELLNLQTLD--CLSLK-RLPQGIGKLI-NLRHLIFDVFGVD-YVPNGFERLTGLR 503 (794)
Q Consensus 432 ~~l~~L~~L~L~~--~~-~lp~~i~~L~~L~~L~--~~~l~-~lp~~~~~L~-~L~~L~l~~~~l~-~lp~~i~~l~~L~ 503 (794)
+++++|++|++++ +. .+|..++++.+|++|+ .+.+. .+|..++.++ +|++|+++.|.+. .+|..+..++ |+
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 8999999999988 54 7888888899999888 55565 6788888887 8899999888887 5677777776 77
Q ss_pred ccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccc
Q 045633 504 TLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMW 583 (794)
Q Consensus 504 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~ 583 (794)
.|++.... +. ......+..+++|+.|++++|....
T Consensus 201 ~L~Ls~N~------------l~------------------------~~~~~~~~~l~~L~~L~L~~N~l~~--------- 235 (313)
T 1ogq_A 201 FVDLSRNM------------LE------------------------GDASVLFGSDKNTQKIHLAKNSLAF--------- 235 (313)
T ss_dssp EEECCSSE------------EE------------------------ECCGGGCCTTSCCSEEECCSSEECC---------
T ss_pred EEECcCCc------------cc------------------------CcCCHHHhcCCCCCEEECCCCceee---------
Confidence 66532110 00 0012345677889999999887431
Q ss_pred cCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccc
Q 045633 584 MNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMV 663 (794)
Q Consensus 584 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~ 663 (794)
....+..+++|+.|++++|.....+ |.++..+++|+.|+|++|.....+|..+.+++|+.|++++++
T Consensus 236 -----------~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 236 -----------DLGKVGLSKNLNGLDLRNNRIYGTL--PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp -----------BGGGCCCCTTCCEEECCSSCCEECC--CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred -----------ecCcccccCCCCEEECcCCcccCcC--ChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 1223667899999999999887443 889999999999999999766688888899999999999866
Q ss_pred cce
Q 045633 664 SVK 666 (794)
Q Consensus 664 ~l~ 666 (794)
.+.
T Consensus 303 ~lc 305 (313)
T 1ogq_A 303 CLC 305 (313)
T ss_dssp EEE
T ss_pred Ccc
Confidence 443
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=1.3e-19 Score=187.86 Aligned_cols=244 Identities=18% Similarity=0.191 Sum_probs=181.7
Q ss_pred CCccEEEEcccCcchhhhhh--hhHHHhccCCccceEEEcc-cCCCccccccCccccCccCCcEEeccC--CC-ccCccc
Q 045633 379 KKLRSLILFDVTEDQSAASR--GLQGLFDQLTCLRALKIED-FGLGDKTIEIPRGLENLIHLRYLQLSS--VE-ELPETC 452 (794)
Q Consensus 379 ~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~-~lp~~i 452 (794)
.+++.|+++++. +.. .++..+.++++|++|++++ |.+ ...+|..++++++|++|+|++ +. .+|..+
T Consensus 50 ~~l~~L~L~~~~-----l~~~~~~~~~l~~l~~L~~L~L~~~n~l---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLN-----LPKPYPIPSSLANLPYLNFLYIGGINNL---VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCC-----CSSCEECCGGGGGCTTCSEEEEEEETTE---ESCCCGGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred ceEEEEECCCCC-----ccCCcccChhHhCCCCCCeeeCCCCCcc---cccCChhHhcCCCCCEEECcCCeeCCcCCHHH
Confidence 578999999883 222 3556688999999999995 773 346888999999999999998 65 788899
Q ss_pred cCCCccceec--CcCCC-ccCcccccccCCceeEecccccc-cCCCCCCCCC-CCCccCceEeccccCCCCCCccCcccc
Q 045633 453 CELLNLQTLD--CLSLK-RLPQGIGKLINLRHLIFDVFGVD-YVPNGFERLT-GLRTLSGFTVARVDGEYSSKACNLEGL 527 (794)
Q Consensus 453 ~~L~~L~~L~--~~~l~-~lp~~~~~L~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~~~~~~~~~~~~~~~~~~l~~l 527 (794)
+++.+|++|+ .+.+. .+|..++.+++|++|+++.|.+. .+|..++.++ +|+.|++.... +..
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~------------l~~- 188 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR------------LTG- 188 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE------------EEE-
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe------------eec-
Confidence 9999999999 45565 67888999999999999999988 7888888887 88888632211 000
Q ss_pred cccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccE
Q 045633 528 GNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIES 607 (794)
Q Consensus 528 ~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~ 607 (794)
.....+..+. |+.|++++|... ...+..+..+++|+.
T Consensus 189 -----------------------~~~~~~~~l~-L~~L~Ls~N~l~-------------------~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 189 -----------------------KIPPTFANLN-LAFVDLSRNMLE-------------------GDASVLFGSDKNTQK 225 (313)
T ss_dssp -----------------------ECCGGGGGCC-CSEEECCSSEEE-------------------ECCGGGCCTTSCCSE
T ss_pred -----------------------cCChHHhCCc-ccEEECcCCccc-------------------CcCCHHHhcCCCCCE
Confidence 0011233333 888888888643 123456778899999
Q ss_pred EEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeecccccceEeCcccccCcccCCCccccc
Q 045633 608 LNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGT 686 (794)
Q Consensus 608 L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~ 686 (794)
|++++|..... +..+..+++|+.|++++|.....+|. ++.+++|+.|+++++.-...+|.
T Consensus 226 L~L~~N~l~~~---~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~---------------- 286 (313)
T 1ogq_A 226 IHLAKNSLAFD---LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---------------- 286 (313)
T ss_dssp EECCSSEECCB---GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC----------------
T ss_pred EECCCCceeee---cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC----------------
Confidence 99999887665 45577889999999999965546665 88899999999998654445544
Q ss_pred cCCCccccCCccceeecccccccc
Q 045633 687 FSSSSVVAFPKLEKLDLWIMLQLE 710 (794)
Q Consensus 687 ~~~~~~~~~~~L~~L~l~~~~~l~ 710 (794)
...+++|+.|++.+++.+.
T Consensus 287 -----~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 287 -----GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -----STTGGGSCGGGTCSSSEEE
T ss_pred -----CccccccChHHhcCCCCcc
Confidence 2467777777777765443
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=4.6e-18 Score=178.16 Aligned_cols=284 Identities=18% Similarity=0.176 Sum_probs=154.8
Q ss_pred CccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccCccCCcEEeccC--CCcc-CccccCC
Q 045633 380 KLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLIHLRYLQLSS--VEEL-PETCCEL 455 (794)
Q Consensus 380 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~--~~~l-p~~i~~L 455 (794)
+++.+.++++. .. .+|..+ .+.|++|++++|. +..+ |..++++++|++|++++ +..+ |..++++
T Consensus 34 ~l~~l~~~~~~-----l~-~ip~~~--~~~l~~L~l~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDLG-----LK-AVPKEI--SPDTTLLDLQNND----ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp ETTEEECCSSC-----CS-SCCSCC--CTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred cCCEEECCCCC-----cc-ccCCCC--CCCCeEEECCCCc----CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence 57777776652 11 122212 3567777777777 5555 34677777777777776 5555 5567777
Q ss_pred Cccceec--CcCCCccCcccccccCCceeEecccccccCCCC-CCCCCCCCccCceEeccccCCCCCCccCccccccccc
Q 045633 456 LNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNG-FERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNH 532 (794)
Q Consensus 456 ~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 532 (794)
.+|++|+ .+.+..+|..+. ++|++|+++.|.+..+|.. +..+++|+.|++.... +....
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~------------l~~~~---- 163 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP------------LENSG---- 163 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC------------CBGGG----
T ss_pred CCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc------------cccCC----
Confidence 7777777 455667776554 6777777777777766643 5666666666532111 00000
Q ss_pred CCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEee
Q 045633 533 LRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITG 612 (794)
Q Consensus 533 L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 612 (794)
.....+..+ +|+.|++++|... .+|. .+ .++|+.|++++
T Consensus 164 ------------------~~~~~~~~l-~L~~L~l~~n~l~-----~l~~---------------~~--~~~L~~L~l~~ 202 (332)
T 2ft3_A 164 ------------------FEPGAFDGL-KLNYLRISEAKLT-----GIPK---------------DL--PETLNELHLDH 202 (332)
T ss_dssp ------------------SCTTSSCSC-CCSCCBCCSSBCS-----SCCS---------------SS--CSSCSCCBCCS
T ss_pred ------------------CCcccccCC-ccCEEECcCCCCC-----ccCc---------------cc--cCCCCEEECCC
Confidence 001112233 5666666666543 1221 11 24677777777
Q ss_pred cCCCccCCCCchhccccCccEEeecCCCCCCcCC-CCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCc
Q 045633 613 FEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMP-PLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSS 691 (794)
Q Consensus 613 ~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~-~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~ 691 (794)
|...... |..+..+++|+.|++++|......+ .++.+++|+.|+++++ .++.+|..
T Consensus 203 n~i~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~-------------------- 259 (332)
T 2ft3_A 203 NKIQAIE--LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAG-------------------- 259 (332)
T ss_dssp SCCCCCC--TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTT--------------------
T ss_pred CcCCccC--HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChh--------------------
Confidence 6665541 3556666777777777763322222 2566677777777654 34444432
Q ss_pred cccCCccceeeccccccccccccCCCC----ccCCCcccEEeeccCccC--cCCCcCccCCCCccEEEeccCc
Q 045633 692 VVAFPKLEKLDLWIMLQLEEWDFGKED----ITIMPQIKSLMIFSCEKL--KSLPDQLLRSTTLESLEIGEAP 758 (794)
Q Consensus 692 ~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~~l~~L~~L~l~~c~~l--~~ip~~~~~l~~L~~L~l~~~~ 758 (794)
+..+++|+.|+++++ .+..++...-. ...+++|+.|++.+|+.. ...|..+..+++|+.+++++|.
T Consensus 260 l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 345666777776662 44444321100 012456667777766533 2344445566667777666653
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=7e-18 Score=194.20 Aligned_cols=421 Identities=14% Similarity=0.105 Sum_probs=247.3
Q ss_pred ccCcceEEEEEecccccCcc-cccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCc-cc
Q 045633 354 CQEKLRHLTLMLGLRAKFPV-SIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPR-GL 431 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~-~i 431 (794)
...+++.|.+..+.+..+++ .+..+++|++|++++|. +....+..|.++++|++|++++|. +..+|. .|
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-----l~~l~~~~f~~L~~L~~L~Ls~N~----l~~l~~~~~ 144 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-----IQSLALGAFSGLSSLQKLVAVETN----LASLENFPI 144 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-----CCEECGGGGTTCTTCCEEECTTSC----CCCSTTCCC
T ss_pred CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-----CCCCCHHHhcCCCCCCEEECCCCc----CCCCChhhh
Confidence 45679999999998887665 57889999999999983 444456679999999999999999 777765 58
Q ss_pred cCccCCcEEeccC--CC--ccCccccCCCccceec--CcCCCccC-cccccccCCc----eeEecccccccCCCCCCCCC
Q 045633 432 ENLIHLRYLQLSS--VE--ELPETCCELLNLQTLD--CLSLKRLP-QGIGKLINLR----HLIFDVFGVDYVPNGFERLT 500 (794)
Q Consensus 432 ~~l~~L~~L~L~~--~~--~lp~~i~~L~~L~~L~--~~~l~~lp-~~~~~L~~L~----~L~l~~~~l~~lp~~i~~l~ 500 (794)
+++++|++|+|++ +. .+|..+++|.+|++|+ .+.+..++ ..+..+.+++ .++++.|.+..++.+.....
T Consensus 145 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~ 224 (635)
T 4g8a_A 145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 224 (635)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred hcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccch
Confidence 9999999999998 55 4578899999999999 55676664 3465555444 34555555554443322111
Q ss_pred -------------------------CCCccCceEecc-----ccCC---------------------------CCCCcc-
Q 045633 501 -------------------------GLRTLSGFTVAR-----VDGE---------------------------YSSKAC- 522 (794)
Q Consensus 501 -------------------------~L~~L~~~~~~~-----~~~~---------------------------~~~~~~- 522 (794)
.++...+..... +... ......
T Consensus 225 ~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 304 (635)
T 4g8a_A 225 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNC 304 (635)
T ss_dssp EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGG
T ss_pred hhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhh
Confidence 111110000000 0000 000000
Q ss_pred ---------------CcccccccccCCCeeEEccccC--CCChh--h-----------hhhccccCCCCCceEEEEecCC
Q 045633 523 ---------------NLEGLGNLNHLRGFLRICGLGN--VTAAD--E-----------AKNAHLEKKKNLVHLILDFTKR 572 (794)
Q Consensus 523 ---------------~l~~l~~L~~L~~~l~~~~~~~--~~~~~--~-----------~~~~~l~~~~~L~~L~l~~~~~ 572 (794)
.+..+.....++ .+.+..+.- ..... . ........+++|+.++++.+..
T Consensus 305 ~~~l~~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l 383 (635)
T 4g8a_A 305 LTNVSSFSLVSVTIERVKDFSYNFGWQ-HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 383 (635)
T ss_dssp GTTCSEEEEESCEEEECGGGGSCCCCS-EEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCC
T ss_pred hcccccccccccccccccccccchhhh-hhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccc
Confidence 000011111222 222221110 00000 0 0001122345666666665543
Q ss_pred CCcccccccccc----C---c-chhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCc
Q 045633 573 EDEDYEEAPMWM----N---E-ENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEI 644 (794)
Q Consensus 573 ~~~~~~~~p~~~----~---~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~ 644 (794)
... ...|... . . ............+..+++|+.+++.++...... .+..+..+.+++.++++.|.....
T Consensus 384 ~~~--~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n~l~~~ 460 (635)
T 4g8a_A 384 SFK--GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVA 460 (635)
T ss_dssp BEE--EECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTSCCEEC
T ss_pred ccc--cccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc-cccccccccccccccccccccccc
Confidence 210 0000000 0 0 000000011223456678888888766544332 134567899999999999965444
Q ss_pred CCC-CCCCCCcceeeecccccce-EeCcccccCcccCCCccccc----cCCCccccCCccceeeccccccccccccCCCC
Q 045633 645 MPP-LGKLPSLEILRIAEMVSVK-KVGDEFLGIGIRDHNHIHGT----FSSSSVVAFPKLEKLDLWIMLQLEEWDFGKED 718 (794)
Q Consensus 645 l~~-l~~L~~L~~L~l~~~~~l~-~~~~~~~~~~~l~~~~l~~~----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 718 (794)
.+. +..+++|+.|+++++.... ..|..+.....++.+++++. .++..+.++++|++|+|+++ ++..++ +..
T Consensus 461 ~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~--~~~ 537 (635)
T 4g8a_A 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLD--TFP 537 (635)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCC--CGG
T ss_pred cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCC--hhH
Confidence 444 7789999999999887554 45666777778888888763 34555788999999999984 666654 234
Q ss_pred ccCCCcccEEeeccCccCcCC-CcCccCC-CCccEEEeccCccccccccccCCCCCccccccceeeeccccccCCCC
Q 045633 719 ITIMPQIKSLMIFSCEKLKSL-PDQLLRS-TTLESLEIGEAPIVEQNFKKDTGKDWSKISHIPNILISGRYEQGGPS 793 (794)
Q Consensus 719 ~~~l~~L~~L~l~~c~~l~~i-p~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 793 (794)
+..+++|+.|++++| .++.+ |..+.++ ++|+.|++++||.--+ |.-..-..|-+-... .+.-.+++.|..|+
T Consensus 538 ~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~-C~~~~~~~wl~~~~~-~~~~~~~~~C~~P~ 611 (635)
T 4g8a_A 538 YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFACT-CEHQSFLQWIKDQRQ-LLVEVERMECATPS 611 (635)
T ss_dssp GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCCS-GGGHHHHHHHHHTTT-TBSCGGGCBBCSST
T ss_pred HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCccc-CCcHHHHHHHHhCCC-ccCCCCCceeCCch
Confidence 568999999999999 55554 5567666 6899999999986432 222112234322111 11123566777775
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=183.74 Aligned_cols=248 Identities=17% Similarity=0.160 Sum_probs=141.2
Q ss_pred CccceEEEcccCCCccccccCc-cccCccCCcEEeccC--CCccC-ccccCCCccceec--CcCCCccCcc-cccccCCc
Q 045633 408 TCLRALKIEDFGLGDKTIEIPR-GLENLIHLRYLQLSS--VEELP-ETCCELLNLQTLD--CLSLKRLPQG-IGKLINLR 480 (794)
Q Consensus 408 ~~L~~L~l~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~--~~~lp-~~i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~ 480 (794)
++|++|++++|. +..+|. .+.++++|++|++++ +..++ ..++++.+|++|+ .+.+..+|.. ++++++|+
T Consensus 52 ~~L~~L~l~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNR----ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCc----CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 467888888877 556654 677788888888876 66664 4577777777777 5567777665 67777777
Q ss_pred eeEecccccccCCC--CCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccC
Q 045633 481 HLIFDVFGVDYVPN--GFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEK 558 (794)
Q Consensus 481 ~L~l~~~~l~~lp~--~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~ 558 (794)
+|+++.|.+..+|. .+..+++|++|++..+.. +..+ ....+..
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~-----------------~~~~------------------~~~~~~~ 172 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT-----------------FTKI------------------QRKDFAG 172 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS-----------------CCEE------------------CTTTTTT
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCcc-----------------cccc------------------CHHHccC
Confidence 77777777777765 456666666665322110 0000 0112334
Q ss_pred CCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCch-hccccCccEEeec
Q 045633 559 KKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNW-TASLDKLKRLDLA 637 (794)
Q Consensus 559 ~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~-~~~l~~L~~L~L~ 637 (794)
+++|+.|++++|.... ..+..+..+++|+.|++++|..... |.. +..+++|+.|+++
T Consensus 173 l~~L~~L~l~~n~l~~-------------------~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 173 LTFLEELEIDASDLQS-------------------YEPKSLKSIQNVSHLILHMKQHILL---LEIFVDVTSSVECLELR 230 (353)
T ss_dssp CCEEEEEEEEETTCCE-------------------ECTTTTTTCSEEEEEEEECSCSTTH---HHHHHHHTTTEEEEEEE
T ss_pred CCCCCEEECCCCCcCc-------------------cCHHHHhccccCCeecCCCCccccc---hhhhhhhcccccEEECC
Confidence 4556666666655331 1123344455566666655554433 322 2235555555555
Q ss_pred CCCCCCcCCCCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccc----cccccc
Q 045633 638 FCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIML----QLEEWD 713 (794)
Q Consensus 638 ~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~----~l~~~~ 713 (794)
+|.. ..++. ..+.. ....+.++.+++.++. .+..+
T Consensus 231 ~n~l-~~~~~----------------------~~l~~-----------------~~~~~~l~~l~L~~~~l~~~~l~~l- 269 (353)
T 2z80_A 231 DTDL-DTFHF----------------------SELST-----------------GETNSLIKKFTFRNVKITDESLFQV- 269 (353)
T ss_dssp SCBC-TTCCC----------------------C-----------------------CCCCCCEEEEESCBCCHHHHHHH-
T ss_pred CCcc-ccccc----------------------ccccc-----------------ccccchhhccccccccccCcchhhh-
Confidence 5521 11110 00000 1122333333333321 11111
Q ss_pred cCCCCccCCCcccEEeeccCccCcCCCcCc-cCCCCccEEEeccCccc
Q 045633 714 FGKEDITIMPQIKSLMIFSCEKLKSLPDQL-LRSTTLESLEIGEAPIV 760 (794)
Q Consensus 714 ~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~-~~l~~L~~L~l~~~~~l 760 (794)
+..+..+++|+.|++++| .++.+|..+ ..+++|++|++++|+..
T Consensus 270 --~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 270 --MKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp --HHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred --HHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 122447889999999999 788898875 68999999999999864
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=6.5e-17 Score=181.40 Aligned_cols=138 Identities=17% Similarity=0.237 Sum_probs=104.2
Q ss_pred CCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecC
Q 045633 559 KKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAF 638 (794)
Q Consensus 559 ~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~ 638 (794)
..+|+.|++++|.... +| ..+++|+.|++++|....+ |.. +++|+.|++++
T Consensus 160 ~~~L~~L~L~~N~l~~-----l~------------------~~~~~L~~L~Ls~N~l~~l---~~~---~~~L~~L~L~~ 210 (622)
T 3g06_A 160 PSELCKLWAYNNQLTS-----LP------------------MLPSGLQELSVSDNQLASL---PTL---PSELYKLWAYN 210 (622)
T ss_dssp CTTCCEEECCSSCCSC-----CC------------------CCCTTCCEEECCSSCCSCC---CCC---CTTCCEEECCS
T ss_pred cCCCCEEECCCCCCCC-----Cc------------------ccCCCCcEEECCCCCCCCC---CCc---cchhhEEECcC
Confidence 3567788888776541 11 3357889999988887765 543 57889999988
Q ss_pred CCCCCcCCCCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCC
Q 045633 639 CPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKED 718 (794)
Q Consensus 639 ~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 718 (794)
| .+..+|.. +++|+.|++++| .++.+| ..+++|+.|+++++ ++..++.
T Consensus 211 N-~l~~l~~~--~~~L~~L~Ls~N-~L~~lp-----------------------~~l~~L~~L~Ls~N-~L~~lp~---- 258 (622)
T 3g06_A 211 N-RLTSLPAL--PSGLKELIVSGN-RLTSLP-----------------------VLPSELKELMVSGN-RLTSLPM---- 258 (622)
T ss_dssp S-CCSSCCCC--CTTCCEEECCSS-CCSCCC-----------------------CCCTTCCEEECCSS-CCSCCCC----
T ss_pred C-cccccCCC--CCCCCEEEccCC-ccCcCC-----------------------CCCCcCcEEECCCC-CCCcCCc----
Confidence 8 45566642 578999999875 344443 25689999999985 6666543
Q ss_pred ccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCccc
Q 045633 719 ITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPIV 760 (794)
Q Consensus 719 ~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~l 760 (794)
.+++|+.|++++| .++.+|..+..+++|+.|++++|+.-
T Consensus 259 --~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 259 --LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp --CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred --ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 5789999999999 78899999999999999999999864
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=6.9e-17 Score=167.17 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=38.8
Q ss_pred ccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCC-CCccEEEeccCcc
Q 045633 693 VAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRS-TTLESLEIGEAPI 759 (794)
Q Consensus 693 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l-~~L~~L~l~~~~~ 759 (794)
..+++|+.|+++++ .+..+.. ..+..+++|+.|++++|......|..+..+ ++|++|++++|+.
T Consensus 196 ~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 196 NSLSSLQVLNMSHN-NFFSLDT--FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTCTTCCEEECTTS-CCSBCCS--GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred cCCCCCCEEECCCC-ccCccCh--hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 34555666665552 2333221 123467788888888885444456666666 4788888888875
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=2e-16 Score=172.49 Aligned_cols=133 Identities=18% Similarity=0.280 Sum_probs=80.9
Q ss_pred CCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccccCcccCC
Q 045633 601 APPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDH 680 (794)
Q Consensus 601 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~ 680 (794)
.+++|+.|++++|.....+. +..+..+++|+.|+|++| .+..+|.+..+++|+.|+|+++ .++.++...
T Consensus 158 ~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-------- 226 (440)
T 3zyj_A 158 RIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGN-HLSAIRPGS-------- 226 (440)
T ss_dssp TCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTS-CCCEECTTT--------
T ss_pred hCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCC-ccCccChhh--------
Confidence 34455555555433222211 334566777777777777 4556666777777777777765 344443221
Q ss_pred CccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcC-ccCCCCccEEEeccCcc
Q 045633 681 NHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQ-LLRSTTLESLEIGEAPI 759 (794)
Q Consensus 681 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~-~~~l~~L~~L~l~~~~~ 759 (794)
+..+++|+.|++.++ ++..+. +..+..+++|+.|++++| .++.+|.. +..+++|+.|++++||.
T Consensus 227 -----------~~~l~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 227 -----------FQGLMHLQKLWMIQS-QIQVIE--RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp -----------TTTCTTCCEEECTTC-CCCEEC--TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred -----------hccCccCCEEECCCC-ceeEEC--hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 446677777777763 444443 233557788888888887 56666653 45678888888888774
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=2.2e-16 Score=172.81 Aligned_cols=134 Identities=21% Similarity=0.254 Sum_probs=84.6
Q ss_pred CCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccccCcccC
Q 045633 600 QAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRD 679 (794)
Q Consensus 600 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~ 679 (794)
..+++|+.|++++|.....+. +..+..+++|+.|+|++| .+..+|.+..+++|+.|+++++. ++.++...
T Consensus 168 ~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~------- 237 (452)
T 3zyi_A 168 NRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNH-FPEIRPGS------- 237 (452)
T ss_dssp TTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSC-CSEECGGG-------
T ss_pred hcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCC-cccccccccccccccEEECcCCc-CcccCccc-------
Confidence 344555555555533322211 334666777777777777 45566777777888888887654 33332221
Q ss_pred CCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcC-ccCCCCccEEEeccCc
Q 045633 680 HNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQ-LLRSTTLESLEIGEAP 758 (794)
Q Consensus 680 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~-~~~l~~L~~L~l~~~~ 758 (794)
+..+++|+.|++.++ ++..+. +..+..+++|+.|++++| .++.+|.. +..+++|++|++++||
T Consensus 238 ------------~~~l~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 238 ------------FHGLSSLKKLWVMNS-QVSLIE--RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ------------GTTCTTCCEEECTTS-CCCEEC--TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ------------ccCccCCCEEEeCCC-cCceEC--HHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 456778888888773 444443 334557788888888888 67776654 4567888888888887
Q ss_pred c
Q 045633 759 I 759 (794)
Q Consensus 759 ~ 759 (794)
.
T Consensus 302 ~ 302 (452)
T 3zyi_A 302 W 302 (452)
T ss_dssp E
T ss_pred c
Confidence 4
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=1.2e-16 Score=179.18 Aligned_cols=258 Identities=17% Similarity=0.088 Sum_probs=174.0
Q ss_pred cceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccC
Q 045633 357 KLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIH 436 (794)
Q Consensus 357 ~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~ 436 (794)
.++.+.+.++....+|..+. ++|+.|++++|.. . .++. .+++|++|+|++|. +..+|. .+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l-----~-~lp~---~l~~L~~L~Ls~N~----l~~lp~---~l~~ 102 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNL-----T-SLPA---LPPELRTLEVSGNQ----LTSLPV---LPPG 102 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCC-----S-CCCC---CCTTCCEEEECSCC----CSCCCC---CCTT
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCC-----C-CCCC---cCCCCCEEEcCCCc----CCcCCC---CCCC
Confidence 46778888887777777665 7899999988832 2 2332 57889999999998 677877 6789
Q ss_pred CcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCceEecc
Q 045633 437 LRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTVAR 512 (794)
Q Consensus 437 L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~ 512 (794)
|++|++++ +..+|. .+.+|+.|+ .+++..+|.. +++|++|++++|.+..+|..+ .+|+.|++..+
T Consensus 103 L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~---~~L~~L~L~~N-- 171 (622)
T 3g06_A 103 LLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNN-- 171 (622)
T ss_dssp CCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS--
T ss_pred CCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCcc---CCCCEEECCCC--
Confidence 99999988 888887 567788887 5668888874 488999999888888887543 44555542110
Q ss_pred ccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHH
Q 045633 513 VDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQ 592 (794)
Q Consensus 513 ~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~ 592 (794)
.+..++ ..+++|+.|++++|.... +|
T Consensus 172 ----------~l~~l~----------------------------~~~~~L~~L~Ls~N~l~~-----l~----------- 197 (622)
T 3g06_A 172 ----------QLTSLP----------------------------MLPSGLQELSVSDNQLAS-----LP----------- 197 (622)
T ss_dssp ----------CCSCCC----------------------------CCCTTCCEEECCSSCCSC-----CC-----------
T ss_pred ----------CCCCCc----------------------------ccCCCCcEEECCCCCCCC-----CC-----------
Confidence 111100 123567777777776431 11
Q ss_pred HHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCccc
Q 045633 593 EAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEF 672 (794)
Q Consensus 593 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~ 672 (794)
..+++|+.|++++|....+ |.. +++|+.|++++| .+..+| ..+++|+.|++++| .++.+|.
T Consensus 198 -------~~~~~L~~L~L~~N~l~~l---~~~---~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~-- 258 (622)
T 3g06_A 198 -------TLPSELYKLWAYNNRLTSL---PAL---PSGLKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLPM-- 258 (622)
T ss_dssp -------CCCTTCCEEECCSSCCSSC---CCC---CTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC--
T ss_pred -------CccchhhEEECcCCccccc---CCC---CCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCCc--
Confidence 1236788888888777665 542 477888888887 455566 45678888888875 3444432
Q ss_pred ccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCc
Q 045633 673 LGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPD 741 (794)
Q Consensus 673 ~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~ 741 (794)
.+++|+.|+++++ ++..++ ..+..+++|+.|++++|+.....|.
T Consensus 259 ---------------------~~~~L~~L~Ls~N-~L~~lp---~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 259 ---------------------LPSGLLSLSVYRN-QLTRLP---ESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ---------------------CCTTCCEEECCSS-CCCSCC---GGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ---------------------ccccCcEEeCCCC-CCCcCC---HHHhhccccCEEEecCCCCCCcCHH
Confidence 3467888888774 555443 3456788888888888864444444
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=1.3e-16 Score=174.69 Aligned_cols=235 Identities=18% Similarity=0.182 Sum_probs=166.4
Q ss_pred ceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccCccC
Q 045633 358 LRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLIH 436 (794)
Q Consensus 358 ~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~ 436 (794)
...+.........+|..+. ++++.|+++++. +....+..|.++++|++|+|++|. +..+ |..|.++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENN-----IQMIQADTFRHLHHLEVLQLGRNS----IRQIEVGAFNGLAS 124 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSC----CCEECTTTTTTCTT
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCc-----CceECHHHcCCCCCCCEEECCCCc----cCCcChhhccCccc
Confidence 3455555555555665543 688888888873 333345567888888888888888 5555 466888888
Q ss_pred CcEEeccC--CCccCcc-ccCCCccceec--CcCCCccCc-ccccccCCceeEecc-cccccCCC-CCCCCCCCCccCce
Q 045633 437 LRYLQLSS--VEELPET-CCELLNLQTLD--CLSLKRLPQ-GIGKLINLRHLIFDV-FGVDYVPN-GFERLTGLRTLSGF 508 (794)
Q Consensus 437 L~~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~lp~-~~~~L~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L~~~ 508 (794)
|++|+|++ +..+|.. +.++.+|++|+ .+.+..+|. .+.++++|++|+++. +.+..+|. .+..+++|+.|++.
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 88888887 7777765 77888888888 566777765 477888888888844 67777764 46777777777632
Q ss_pred EeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcch
Q 045633 509 TVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEEN 588 (794)
Q Consensus 509 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~ 588 (794)
.+ .+..+ ..+..+++|+.|++++|.+.
T Consensus 205 ~n------------~l~~~--------------------------~~~~~l~~L~~L~Ls~N~l~--------------- 231 (452)
T 3zyi_A 205 MC------------NIKDM--------------------------PNLTPLVGLEELEMSGNHFP--------------- 231 (452)
T ss_dssp TS------------CCSSC--------------------------CCCTTCTTCCEEECTTSCCS---------------
T ss_pred CC------------ccccc--------------------------ccccccccccEEECcCCcCc---------------
Confidence 11 11111 01445678888888888754
Q ss_pred hHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC--CCCCCCcceeeecccc
Q 045633 589 EAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP--LGKLPSLEILRIAEMV 663 (794)
Q Consensus 589 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~~L~l~~~~ 663 (794)
...+..+..+++|+.|++++|...... |..+..+++|+.|+|++| .+..++. +..+++|+.|+|++++
T Consensus 232 ----~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 232 ----EIRPGSFHGLSSLKKLWVMNSQVSLIE--RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ----EECGGGGTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ----ccCcccccCccCCCEEEeCCCcCceEC--HHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 112346777889999999998877663 667888999999999999 4555554 6789999999998754
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=3.3e-19 Score=196.46 Aligned_cols=355 Identities=16% Similarity=0.124 Sum_probs=221.8
Q ss_pred CcceEEEEEecccccCc--ccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccc-cCcccc
Q 045633 356 EKLRHLTLMLGLRAKFP--VSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIE-IPRGLE 432 (794)
Q Consensus 356 ~~~r~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-lp~~i~ 432 (794)
..++.|.+..+.....+ ..+..+++|++|+++++...... ...++..+..+++|++|++++|.+ .. .+..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~-~~~l~~~l~~~~~L~~L~Ls~n~l----~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR-CKDISSALRVNPALAELNLRSNEL----GDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH-HHHHHHHHHTCTTCCEEECTTCCC----HHHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHH-HHHHHHHHHhCCCcCEEeCCCCcC----ChHHHHHHH
Confidence 45778888877665422 22567889999999988533221 223566688889999999999884 33 222222
Q ss_pred -Ccc----CCcEEeccC--CC-----ccCccccCCCccceec--CcCCCcc-Cccc-----ccccCCceeEeccccccc-
Q 045633 433 -NLI----HLRYLQLSS--VE-----ELPETCCELLNLQTLD--CLSLKRL-PQGI-----GKLINLRHLIFDVFGVDY- 491 (794)
Q Consensus 433 -~l~----~L~~L~L~~--~~-----~lp~~i~~L~~L~~L~--~~~l~~l-p~~~-----~~L~~L~~L~l~~~~l~~- 491 (794)
.+. +|++|+|++ +. .+|..+.++++|++|+ .+.+... +..+ ..+++|++|+++.|.+..
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 344 699999998 44 5677888999999998 3444321 1112 225679999998887764
Q ss_pred ----CCCCCCCCCCCCccCceEeccccCCCCCCccCccccc-----ccccCCCeeEEccccCCCChhhhhhccccCCCCC
Q 045633 492 ----VPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLG-----NLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNL 562 (794)
Q Consensus 492 ----lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~-----~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L 562 (794)
++..+..+++|++|++..+.- . ...+..+. .+++|+ .+.+.++.-.......+...+..+++|
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i-~------~~~~~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDI-N------EAGVRVLCQGLKDSPCQLE-ALKLESCGVTSDNCRDLCGIVASKASL 229 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBC-H------HHHHHHHHHHHHHSCCCCC-EEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCc-c------hHHHHHHHHHHhcCCCCce-EEEccCCCCcHHHHHHHHHHHHhCCCc
Confidence 345566778888887543321 0 00111111 133555 666655432222222344556678999
Q ss_pred ceEEEEecCCCCccccccccccCcchhHHHHHHhhh-CCCCCCccEEEEeecCCCc-----cCCCCchhccccCccEEee
Q 045633 563 VHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEA-LQAPPNIESLNITGFEGRR-----LIFSSNWTASLDKLKRLDL 636 (794)
Q Consensus 563 ~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~-----~~~~p~~~~~l~~L~~L~L 636 (794)
+.|++++|.... .....+... ...+++|+.|++++|.... + +..+..+++|+.|++
T Consensus 230 ~~L~Ls~n~l~~---------------~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 230 RELALGSNKLGD---------------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL---CRVLRAKESLKELSL 291 (461)
T ss_dssp CEEECCSSBCHH---------------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH---HHHHHHCTTCCEEEC
T ss_pred cEEeccCCcCCh---------------HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH---HHHHhhCCCcceEEC
Confidence 999999987531 001122222 3357899999999987655 4 566777899999999
Q ss_pred cCCCCCCc----CCC--CCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeecccccccc
Q 045633 637 AFCPRCEI----MPP--LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLE 710 (794)
Q Consensus 637 ~~~~~l~~----l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~ 710 (794)
++|..-.. +.. ....++|+.|++++|. ++..+.... +..+..+++|+.|+++++ .+.
T Consensus 292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l---------------~~~l~~~~~L~~L~Ls~n-~i~ 354 (461)
T 1z7x_W 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHF---------------SSVLAQNRFLLELQISNN-RLE 354 (461)
T ss_dssp TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHH---------------HHHHHHCSSCCEEECCSS-BCH
T ss_pred CCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHH---------------HHHHhhCCCccEEEccCC-ccc
Confidence 99953211 111 1234799999999875 221110000 001456789999999885 444
Q ss_pred ccccC--CCCcc-CCCcccEEeeccCccCc-----CCCcCccCCCCccEEEeccCcc
Q 045633 711 EWDFG--KEDIT-IMPQIKSLMIFSCEKLK-----SLPDQLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 711 ~~~~~--~~~~~-~l~~L~~L~l~~c~~l~-----~ip~~~~~l~~L~~L~l~~~~~ 759 (794)
..... ...+. ..++|+.|++++| .++ .+|..+..+++|++|++++|+.
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred cccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 32210 00011 2679999999999 565 6787777899999999999964
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=1.5e-18 Score=197.73 Aligned_cols=366 Identities=12% Similarity=0.025 Sum_probs=188.0
Q ss_pred cCcceEEEEEeccccc-CcccccC-CCC-ccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccc-cccCcc
Q 045633 355 QEKLRHLTLMLGLRAK-FPVSIFD-AKK-LRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKT-IEIPRG 430 (794)
Q Consensus 355 ~~~~r~l~l~~~~~~~-~~~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~lp~~ 430 (794)
...++.|.+..+.... .+..+.. ++. |++|++.++.. .....++.....+++|++|+|++|.+...- ..++..
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~---~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG---FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE---EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC---cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 3456777776664432 1112222 333 77777766631 112223444456777777777777631110 002333
Q ss_pred ccCccCCcEEeccC--CC-----ccCccccCCCccceec--CcCCCccCcccccccCCceeEeccccc----ccCCCCCC
Q 045633 431 LENLIHLRYLQLSS--VE-----ELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGV----DYVPNGFE 497 (794)
Q Consensus 431 i~~l~~L~~L~L~~--~~-----~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l----~~lp~~i~ 497 (794)
+..+++|++|++++ +. .++..+.++.+|++|+ ...+..+|..+..+++|++|+++.... ...+..+.
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 44667777777765 43 3344455667777776 334555666677777777777743221 12234455
Q ss_pred CCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccc
Q 045633 498 RLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDY 577 (794)
Q Consensus 498 ~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 577 (794)
.+++|+.|.+..... ...-..+..+++|+ .+++.++. +. .......+..+++|+.|+++.+ ..
T Consensus 268 ~~~~L~~L~l~~~~~--------~~l~~~~~~~~~L~-~L~Ls~~~-l~--~~~~~~~~~~~~~L~~L~L~~~-~~---- 330 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGP--------NEMPILFPFAAQIR-KLDLLYAL-LE--TEDHCTLIQKCPNLEVLETRNV-IG---- 330 (592)
T ss_dssp CCTTCCEEEETTCCT--------TTGGGGGGGGGGCC-EEEETTCC-CC--HHHHHHHHTTCTTCCEEEEEGG-GH----
T ss_pred ccccccccCccccch--------hHHHHHHhhcCCCc-EEecCCCc-CC--HHHHHHHHHhCcCCCEEeccCc-cC----
Confidence 556666554221100 00111233455555 66666543 21 1222233566778888888732 11
Q ss_pred cccccccCcchhHHHHHHhhhCCCCCCccEEEEee----------cCCCccCCCCchhccccCccEEeecCCCCCCc--C
Q 045633 578 EEAPMWMNEENEAKQEAICEALQAPPNIESLNITG----------FEGRRLIFSSNWTASLDKLKRLDLAFCPRCEI--M 645 (794)
Q Consensus 578 ~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~--l 645 (794)
..........+++|++|++++ |........+.....+++|+.|+++.+ .+.. +
T Consensus 331 --------------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~ 395 (592)
T 3ogk_B 331 --------------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESL 395 (592)
T ss_dssp --------------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHH
T ss_pred --------------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHH
Confidence 122222334567888888883 433321000233446788888888544 3332 1
Q ss_pred CCCCC-CCCcceeeecc---cccceEeCcc------cccCcccCCCccc---cccCC----CccccCCccceeecccccc
Q 045633 646 PPLGK-LPSLEILRIAE---MVSVKKVGDE------FLGIGIRDHNHIH---GTFSS----SSVVAFPKLEKLDLWIMLQ 708 (794)
Q Consensus 646 ~~l~~-L~~L~~L~l~~---~~~l~~~~~~------~~~~~~l~~~~l~---~~~~~----~~~~~~~~L~~L~l~~~~~ 708 (794)
..++. +++|+.|++++ |+.++..|.+ +.+...++.+.+. +.... .....+++|+.|++.++.
T Consensus 396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~- 474 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG- 474 (592)
T ss_dssp HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-
T ss_pred HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-
Confidence 22333 78899999874 4455543221 2223344444442 11111 111236677777776642
Q ss_pred ccccccCCCCccCCCcccEEeeccCccCcC--CCcCccCCCCccEEEeccCc
Q 045633 709 LEEWDFGKEDITIMPQIKSLMIFSCEKLKS--LPDQLLRSTTLESLEIGEAP 758 (794)
Q Consensus 709 l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--ip~~~~~l~~L~~L~l~~~~ 758 (794)
+..... +..+..+++|++|+|++|+ ++. ++.....+++|++|++++|.
T Consensus 475 l~~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 475 ESDEGL-MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SSHHHH-HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCHHHH-HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 322110 0112357888888888886 432 34444567888888888887
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=7.3e-17 Score=170.59 Aligned_cols=257 Identities=16% Similarity=0.140 Sum_probs=162.0
Q ss_pred EecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccCccCCcEEec
Q 045633 364 MLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLIHLRYLQL 442 (794)
Q Consensus 364 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L~~L~L 442 (794)
..+....+|..+. ++|++|+++++. +....+..|.++++|++|++++|. +..+ |..++++++|++|++
T Consensus 39 ~~~~l~~iP~~~~--~~L~~L~l~~n~-----i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 39 SSGSLNSIPSGLT--EAVKSLDLSNNR-----ITYISNSDLQRCVNLQALVLTSNG----INTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CSTTCSSCCTTCC--TTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEEC
T ss_pred CCCCccccccccc--ccCcEEECCCCc-----CcccCHHHhccCCCCCEEECCCCc----cCccCHhhcCCCCCCCEEEC
Confidence 3444445555443 477788777763 223333456777788888888777 5454 455777788888888
Q ss_pred cC--CCccCcc-ccCCCccceec--CcCCCccCc--ccccccCCceeEeccc-ccccCC-CCCCCCCCCCccCceEeccc
Q 045633 443 SS--VEELPET-CCELLNLQTLD--CLSLKRLPQ--GIGKLINLRHLIFDVF-GVDYVP-NGFERLTGLRTLSGFTVARV 513 (794)
Q Consensus 443 ~~--~~~lp~~-i~~L~~L~~L~--~~~l~~lp~--~~~~L~~L~~L~l~~~-~l~~lp-~~i~~l~~L~~L~~~~~~~~ 513 (794)
++ +..+|.. ++++.+|++|+ .+.+..+|. .+..+++|++|+++.| .+..++ ..++.+++|++|++..+..
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l- 186 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL- 186 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC-
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc-
Confidence 76 7777765 77778888887 456777766 5777788888888665 466554 5577777777776543321
Q ss_pred cCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHH
Q 045633 514 DGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQE 593 (794)
Q Consensus 514 ~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~ 593 (794)
.+ .....+..+++|+ .+.+.... .... ....+..+++|+.|++++|.........+
T Consensus 187 ~~------~~~~~l~~l~~L~-~L~l~~n~-l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~l------------- 242 (353)
T 2z80_A 187 QS------YEPKSLKSIQNVS-HLILHMKQ-HILL---LEIFVDVTSSVECLELRDTDLDTFHFSEL------------- 242 (353)
T ss_dssp CE------ECTTTTTTCSEEE-EEEEECSC-STTH---HHHHHHHTTTEEEEEEESCBCTTCCCC---------------
T ss_pred Cc------cCHHHHhccccCC-eecCCCCc-cccc---hhhhhhhcccccEEECCCCcccccccccc-------------
Confidence 11 0112233344444 55554322 1221 22233457899999999987653211111
Q ss_pred HHhhhCCCCCCccEEEEeecCCCc-----cCCCCchhccccCccEEeecCCCCCCcCCC--CCCCCCcceeeecccc
Q 045633 594 AICEALQAPPNIESLNITGFEGRR-----LIFSSNWTASLDKLKRLDLAFCPRCEIMPP--LGKLPSLEILRIAEMV 663 (794)
Q Consensus 594 ~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~~L~l~~~~ 663 (794)
......+.++.+++.++.... + |.++..+++|+.|++++|. +..+|. ++.+++|++|++++++
T Consensus 243 ---~~~~~~~~l~~l~L~~~~l~~~~l~~l---~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 243 ---STGETNSLIKKFTFRNVKITDESLFQV---MKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -------CCCCCCEEEEESCBCCHHHHHHH---HHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---ccccccchhhccccccccccCcchhhh---HHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 122345678888887765432 4 6778899999999999994 556776 5889999999999864
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=172.91 Aligned_cols=235 Identities=20% Similarity=0.211 Sum_probs=163.5
Q ss_pred ceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC-ccccCccC
Q 045633 358 LRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-RGLENLIH 436 (794)
Q Consensus 358 ~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~i~~l~~ 436 (794)
.+.+.........+|..+. ++++.|+++++. +....+..|.++++|++|+|++|. +..++ ..|.++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~----i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQ-----IQIIKVNSFKHLRHLEILQLSRNH----IRTIEIGAFNGLAN 113 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCC-----CCEECTTTTSSCSSCCEEECCSSC----CCEECGGGGTTCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCc-----CCeeCHHHhhCCCCCCEEECCCCc----CCccChhhccCCcc
Confidence 3455555555666666543 678888888773 333334557888888888888888 55554 56788888
Q ss_pred CcEEeccC--CCccCc-cccCCCccceec--CcCCCccCc-ccccccCCceeEecc-cccccCCC-CCCCCCCCCccCce
Q 045633 437 LRYLQLSS--VEELPE-TCCELLNLQTLD--CLSLKRLPQ-GIGKLINLRHLIFDV-FGVDYVPN-GFERLTGLRTLSGF 508 (794)
Q Consensus 437 L~~L~L~~--~~~lp~-~i~~L~~L~~L~--~~~l~~lp~-~~~~L~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L~~~ 508 (794)
|++|+|++ +..+|. .+.++.+|++|+ .+.+..+|. .+..+++|++|+++. +.+..+|. .+.++++|+.|++.
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 88888887 777776 478888888888 556777765 477888888888844 66666664 46777777777632
Q ss_pred EeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcch
Q 045633 509 TVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEEN 588 (794)
Q Consensus 509 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~ 588 (794)
.+ .+..++ .+..+++|+.|++++|....
T Consensus 194 ~n------------~l~~~~--------------------------~~~~l~~L~~L~Ls~N~l~~-------------- 221 (440)
T 3zyj_A 194 MC------------NLREIP--------------------------NLTPLIKLDELDLSGNHLSA-------------- 221 (440)
T ss_dssp TS------------CCSSCC--------------------------CCTTCSSCCEEECTTSCCCE--------------
T ss_pred CC------------cCcccc--------------------------ccCCCcccCEEECCCCccCc--------------
Confidence 11 111110 14456778888888886541
Q ss_pred hHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC--CCCCCCcceeeecccc
Q 045633 589 EAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP--LGKLPSLEILRIAEMV 663 (794)
Q Consensus 589 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~~L~l~~~~ 663 (794)
..+..+..+++|+.|++++|...... |..+..+++|+.|+|++| .+..++. +..+++|+.|+|++++
T Consensus 222 -----~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 222 -----IRPGSFQGLMHLQKLWMIQSQIQVIE--RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -----ECTTTTTTCTTCCEEECTTCCCCEEC--TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -----cChhhhccCccCCEEECCCCceeEEC--hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 12346677889999999998877763 667888999999999998 4555554 6788999999998754
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=7.3e-18 Score=175.13 Aligned_cols=249 Identities=15% Similarity=0.082 Sum_probs=148.8
Q ss_pred hhhhhHHHhccCCccceEEEcccCCCccccccC-ccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccC
Q 045633 396 ASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-RGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLP 470 (794)
Q Consensus 396 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp 470 (794)
....+...+..+++|++|++++|. +..++ ..++.+++|++|+|++ +..++. +..+.+|++|+ .+.+..+|
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~ 96 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGNP----LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL 96 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTSC----CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE
T ss_pred hhhhHHHHhccCCCCCEEECcCCc----cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc
Confidence 344455666777788888888888 55554 5688888888888887 544443 55555555555 23333333
Q ss_pred cccccccCCceeEecccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhh
Q 045633 471 QGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADE 550 (794)
Q Consensus 471 ~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~ 550 (794)
.+++|++|+++.|.+..++..
T Consensus 97 ----~~~~L~~L~l~~n~l~~~~~~------------------------------------------------------- 117 (317)
T 3o53_A 97 ----VGPSIETLHAANNNISRVSCS------------------------------------------------------- 117 (317)
T ss_dssp ----ECTTCCEEECCSSCCSEEEEC-------------------------------------------------------
T ss_pred ----CCCCcCEEECCCCccCCcCcc-------------------------------------------------------
Confidence 224555555555544433311
Q ss_pred hhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchh-cccc
Q 045633 551 AKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWT-ASLD 629 (794)
Q Consensus 551 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~-~~l~ 629 (794)
.+++|+.|++++|.... .....+..+++|+.|++++|...... |..+ ..++
T Consensus 118 -------~~~~L~~L~l~~N~l~~-------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~l~ 169 (317)
T 3o53_A 118 -------RGQGKKNIYLANNKITM-------------------LRDLDEGCRSRVQYLDLKLNEIDTVN--FAELAASSD 169 (317)
T ss_dssp -------CCSSCEEEECCSSCCCS-------------------GGGBCTGGGSSEEEEECTTSCCCEEE--GGGGGGGTT
T ss_pred -------ccCCCCEEECCCCCCCC-------------------ccchhhhccCCCCEEECCCCCCCccc--HHHHhhccC
Confidence 12334455555554331 01123344566777777766655441 2333 4677
Q ss_pred CccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccc
Q 045633 630 KLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQL 709 (794)
Q Consensus 630 ~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 709 (794)
+|+.|++++|. +..++....+++|+.|+++++ .++.++.. +..+++|+.|+++++ ++
T Consensus 170 ~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~--------------------~~~l~~L~~L~L~~N-~l 226 (317)
T 3o53_A 170 TLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFMGPE--------------------FQSAAGVTWISLRNN-KL 226 (317)
T ss_dssp TCCEEECTTSC-CCEEECCCCCTTCCEEECCSS-CCCEECGG--------------------GGGGTTCSEEECTTS-CC
T ss_pred cCCEEECCCCc-CcccccccccccCCEEECCCC-cCCcchhh--------------------hcccCcccEEECcCC-cc
Confidence 78888887773 455565556778888888764 35555443 345677888888774 55
Q ss_pred cccccCCCCccCCCcccEEeeccCccC-cCCCcCccCCCCccEEEeccCccccc
Q 045633 710 EEWDFGKEDITIMPQIKSLMIFSCEKL-KSLPDQLLRSTTLESLEIGEAPIVEQ 762 (794)
Q Consensus 710 ~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~ip~~~~~l~~L~~L~l~~~~~l~~ 762 (794)
..++ ..+..+++|+.|++++|+.. ..+|..+..++.|+.+++.+|+.++.
T Consensus 227 ~~l~---~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 227 VLIE---KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CEEC---TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred cchh---hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 5543 23446778888888888544 35666666777888888877766544
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=1.3e-16 Score=165.16 Aligned_cols=240 Identities=21% Similarity=0.156 Sum_probs=159.9
Q ss_pred EEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcE
Q 045633 360 HLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRY 439 (794)
Q Consensus 360 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~ 439 (794)
.+.........+|..+ .++++.|+++++. +....+..|.++++|++|++++|.+.. +...|..+..+++|++
T Consensus 11 ~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~-----l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI--PSSATRLELESNK-----LQSLPHGVFDKLTQLTKLSLSSNGLSF-KGCCSQSDFGTTSLKY 82 (306)
T ss_dssp EEECCSSCCSSCCSCC--CTTCCEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSCCCE-EEEEEHHHHSCSCCCE
T ss_pred EEEcCCCCcccCCCCC--CCCCCEEECCCCc-----cCccCHhHhhccccCCEEECCCCccCc-ccCcccccccccccCE
Confidence 4444455555556543 3678888887773 233334456788888888888887311 1222566667888888
Q ss_pred EeccC--CCccCccccCCCccceec--CcCCCccCc--ccccccCCceeEecccccccCC-CCCCCCCCCCccCceEecc
Q 045633 440 LQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQ--GIGKLINLRHLIFDVFGVDYVP-NGFERLTGLRTLSGFTVAR 512 (794)
Q Consensus 440 L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~--~~~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~~~~~~~ 512 (794)
|++++ +..+|..+.++.+|++|+ .+.+..+|. .+..+++|++|+++.|.+...+ ..+..+++|++|++....
T Consensus 83 L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~- 161 (306)
T 2z66_A 83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS- 161 (306)
T ss_dssp EECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-
T ss_pred EECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-
Confidence 88887 777777788888888887 455666653 5778888888888777776543 456777777777532111
Q ss_pred ccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHH
Q 045633 513 VDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQ 592 (794)
Q Consensus 513 ~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~ 592 (794)
+.. ......+..+++|+.|++++|....
T Consensus 162 -----------l~~-----------------------~~~~~~~~~l~~L~~L~Ls~n~l~~------------------ 189 (306)
T 2z66_A 162 -----------FQE-----------------------NFLPDIFTELRNLTFLDLSQCQLEQ------------------ 189 (306)
T ss_dssp -----------EGG-----------------------GEECSCCTTCTTCCEEECTTSCCCE------------------
T ss_pred -----------ccc-----------------------ccchhHHhhCcCCCEEECCCCCcCC------------------
Confidence 000 0011235566788888888876541
Q ss_pred HHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCC-Ccceeeecccc
Q 045633 593 EAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLP-SLEILRIAEMV 663 (794)
Q Consensus 593 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~-~L~~L~l~~~~ 663 (794)
..+..+..+++|+.|++++|...... +..+..+++|+.|++++|......+. +..++ +|+.|++++++
T Consensus 190 -~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 190 -LSPTAFNSLSSLQVLNMSHNNFFSLD--TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp -ECTTTTTTCTTCCEEECTTSCCSBCC--SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred -cCHHHhcCCCCCCEEECCCCccCccC--hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 11345667889999999999877762 34678899999999999965554443 77775 89999999754
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=6e-18 Score=192.83 Aligned_cols=324 Identities=13% Similarity=0.078 Sum_probs=164.3
Q ss_pred CCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC------CCccCc
Q 045633 377 DAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS------VEELPE 450 (794)
Q Consensus 377 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~------~~~lp~ 450 (794)
.+++|++|+++++..... ....++..+.++++|+.|++++|. +..+|..+..+++|++|+++. ....+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~----~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKI-SPKDLETIARNCRSLVSVKVGDFE----ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HCCCCCEEECTTCCCSSC-CHHHHHHHHHHCTTCCEEECSSCB----GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred cCCCccEEEeeccCCCcc-CHHHHHHHHhhCCCCcEEeccCcc----HHHHHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 445555555555421100 112234445556666666666665 445555566666666666653 122334
Q ss_pred cccCCCccceec--CcCCCccCcccccccCCceeEeccccccc--CCCCCCCCCCCCccCceEeccccCCCCCCccCccc
Q 045633 451 TCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDY--VPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEG 526 (794)
Q Consensus 451 ~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~ 526 (794)
.+..+.+|+.|+ ......+|..+..+++|++|+++.+.+.. ++..+..+++|+.|++. +.. ....+..
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~--~~~------~~~~l~~ 336 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR--NVI------GDRGLEV 336 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE--GGG------HHHHHHH
T ss_pred HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc--Ccc------CHHHHHH
Confidence 455666666665 22234456666667777777775555432 12224566677766643 110 0001111
Q ss_pred -ccccccCCCeeEEcc----------ccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHH
Q 045633 527 -LGNLNHLRGFLRICG----------LGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAI 595 (794)
Q Consensus 527 -l~~L~~L~~~l~~~~----------~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 595 (794)
...+++|+ .+.+.. +..+.. .........+++|+.|+++.+... ...
T Consensus 337 ~~~~~~~L~-~L~L~~g~~~~~~~~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~l~-------------------~~~ 394 (592)
T 3ogk_B 337 LAQYCKQLK-RLRIERGADEQGMEDEEGLVSQ--RGLIALAQGCQELEYMAVYVSDIT-------------------NES 394 (592)
T ss_dssp HHHHCTTCC-EEEEECCCCSSTTSSTTCCCCH--HHHHHHHHHCTTCSEEEEEESCCC-------------------HHH
T ss_pred HHHhCCCCC-EEEeecCccccccccccCccCH--HHHHHHHhhCccCeEEEeecCCcc-------------------HHH
Confidence 12334455 555552 222221 112222344677777777665543 122
Q ss_pred hhhCC-CCCCccEEEEeecC---CCccCC----CCchhccccCccEEeecCCCC-CC--cCCCC-CCCCCcceeeecccc
Q 045633 596 CEALQ-APPNIESLNITGFE---GRRLIF----SSNWTASLDKLKRLDLAFCPR-CE--IMPPL-GKLPSLEILRIAEMV 663 (794)
Q Consensus 596 ~~~l~-~~~~L~~L~l~~~~---~~~~~~----~p~~~~~l~~L~~L~L~~~~~-l~--~l~~l-~~L~~L~~L~l~~~~ 663 (794)
+..+. .+++|+.|+++++. ..+..+ .+..+..+++|+.|+++.|.. +. .+..+ ..+++|+.|++++|.
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 22222 25677777776432 111100 012244577777777776542 11 11122 236777777777654
Q ss_pred cceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCC--Cc
Q 045633 664 SVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSL--PD 741 (794)
Q Consensus 664 ~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~i--p~ 741 (794)
++.. .+ .....++++|++|++++|+ +..... +.....+++|+.|++++|+ ++.. ..
T Consensus 475 -l~~~--~~----------------~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~ls~n~-it~~~~~~ 532 (592)
T 3ogk_B 475 -ESDE--GL----------------MEFSRGCPNLQKLEMRGCC-FSERAI-AAAVTKLPSLRYLWVQGYR-ASMTGQDL 532 (592)
T ss_dssp -SSHH--HH----------------HHHHTCCTTCCEEEEESCC-CBHHHH-HHHHHHCSSCCEEEEESCB-CCTTCTTG
T ss_pred -CCHH--HH----------------HHHHhcCcccCeeeccCCC-CcHHHH-HHHHHhcCccCeeECcCCc-CCHHHHHH
Confidence 2110 00 0013578999999999986 432111 1112368999999999996 5442 11
Q ss_pred CccCCCCccEEEeccC
Q 045633 742 QLLRSTTLESLEIGEA 757 (794)
Q Consensus 742 ~~~~l~~L~~L~l~~~ 757 (794)
....++.|....+..+
T Consensus 533 l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 533 MQMARPYWNIELIPSR 548 (592)
T ss_dssp GGGCCTTEEEEEECCC
T ss_pred HHHhCCCcEEEEecCc
Confidence 2234677777766654
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=3.4e-16 Score=160.06 Aligned_cols=134 Identities=23% Similarity=0.233 Sum_probs=64.2
Q ss_pred EEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccCccCCcE
Q 045633 361 LTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLIHLRY 439 (794)
Q Consensus 361 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L~~ 439 (794)
+.........+|..+ .++++.|+++++. +....+..|..+++|++|++++|. +..+ |..+..+++|++
T Consensus 16 ~~c~~~~l~~ip~~~--~~~l~~L~l~~n~-----i~~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~ 84 (285)
T 1ozn_A 16 TSCPQQGLQAVPVGI--PAASQRIFLHGNR-----ISHVPAASFRACRNLTILWLHSNV----LARIDAAAFTGLALLEQ 84 (285)
T ss_dssp EECCSSCCSSCCTTC--CTTCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCSSC----CCEECTTTTTTCTTCCE
T ss_pred EEcCcCCcccCCcCC--CCCceEEEeeCCc-----CCccCHHHcccCCCCCEEECCCCc----cceeCHhhcCCccCCCE
Confidence 333333344444322 3456666665552 222223345556666666666665 3333 445556666666
Q ss_pred EeccC---CCcc-CccccCCCccceec--CcCCCcc-CcccccccCCceeEecccccccCCCC-CCCCCCCCcc
Q 045633 440 LQLSS---VEEL-PETCCELLNLQTLD--CLSLKRL-PQGIGKLINLRHLIFDVFGVDYVPNG-FERLTGLRTL 505 (794)
Q Consensus 440 L~L~~---~~~l-p~~i~~L~~L~~L~--~~~l~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L 505 (794)
|++++ +..+ |..+.++.+|++|+ .+.+..+ |..+.++++|++|+++.|.+..+|.. ++.+++|+.|
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 66654 3344 33455555555555 2334433 23344555555555555555444422 3444444444
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=1.3e-16 Score=165.74 Aligned_cols=241 Identities=15% Similarity=0.064 Sum_probs=170.4
Q ss_pred cCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCcccc
Q 045633 376 FDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCC 453 (794)
Q Consensus 376 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~ 453 (794)
..+++|+.|+++++. +....+..|..+++|++|++++|. +..+++ ++.+++|++|++++ +..+|
T Consensus 31 ~~~~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---- 96 (317)
T 3o53_A 31 QSAWNVKELDLSGNP-----LSQISAADLAPFTKLELLNLSSNV----LYETLD-LESLSTLRTLDLNNNYVQELL---- 96 (317)
T ss_dssp TTGGGCSEEECTTSC-----CCCCCHHHHTTCTTCCEEECTTSC----CEEEEE-ETTCTTCCEEECCSSEEEEEE----
T ss_pred ccCCCCCEEECcCCc-----cCcCCHHHhhCCCcCCEEECCCCc----CCcchh-hhhcCCCCEEECcCCcccccc----
Confidence 456799999999983 444456778999999999999999 555554 89999999999998 77666
Q ss_pred CCCccceec--CcCCCccCcccccccCCceeEecccccccCC-CCCCCCCCCCccCceEeccccCCCCCCccCccccccc
Q 045633 454 ELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVP-NGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNL 530 (794)
Q Consensus 454 ~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L 530 (794)
.+.+|++|+ .+.+..++.. .+++|++|+++.|.+..++ ..++.+++|+.|++... .+..
T Consensus 97 ~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N------------~l~~---- 158 (317)
T 3o53_A 97 VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN------------EIDT---- 158 (317)
T ss_dssp ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS------------CCCE----
T ss_pred CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC------------CCCc----
Confidence 347889998 5667776643 4789999999999998875 45777777777763211 1110
Q ss_pred ccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEE
Q 045633 531 NHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNI 610 (794)
Q Consensus 531 ~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 610 (794)
+. .......+++|+.|++++|.... . .....+++|+.|++
T Consensus 159 ------~~-------------~~~~~~~l~~L~~L~L~~N~l~~-----~----------------~~~~~l~~L~~L~L 198 (317)
T 3o53_A 159 ------VN-------------FAELAASSDTLEHLNLQYNFIYD-----V----------------KGQVVFAKLKTLDL 198 (317)
T ss_dssp ------EE-------------GGGGGGGTTTCCEEECTTSCCCE-----E----------------ECCCCCTTCCEEEC
T ss_pred ------cc-------------HHHHhhccCcCCEEECCCCcCcc-----c----------------ccccccccCCEEEC
Confidence 00 00112345788888888887541 1 22334788999999
Q ss_pred eecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeecccccc-eEeCcccccCcccCCCccccccC
Q 045633 611 TGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMVSV-KKVGDEFLGIGIRDHNHIHGTFS 688 (794)
Q Consensus 611 ~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~~l-~~~~~~~~~~~~l~~~~l~~~~~ 688 (794)
++|....+ |..+..+++|+.|++++|. +..+|. +..+++|+.|+++++.-. ..++.
T Consensus 199 s~N~l~~l---~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~------------------ 256 (317)
T 3o53_A 199 SSNKLAFM---GPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRD------------------ 256 (317)
T ss_dssp CSSCCCEE---CGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHH------------------
T ss_pred CCCcCCcc---hhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHH------------------
Confidence 99888877 7778888999999999984 455555 778889999999875532 11111
Q ss_pred CCccccCCccceeecccccccccc
Q 045633 689 SSSVVAFPKLEKLDLWIMLQLEEW 712 (794)
Q Consensus 689 ~~~~~~~~~L~~L~l~~~~~l~~~ 712 (794)
.+..+++|+.|++.+++.++..
T Consensus 257 --~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 257 --FFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp --HHHTCHHHHHHHHHHHHHHHSS
T ss_pred --HHhccccceEEECCCchhccCC
Confidence 1456777888877766655544
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=2.6e-16 Score=173.12 Aligned_cols=232 Identities=16% Similarity=0.081 Sum_probs=130.7
Q ss_pred cCCccceEEEcccCCCcccccc-CccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCc
Q 045633 406 QLTCLRALKIEDFGLGDKTIEI-PRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLR 480 (794)
Q Consensus 406 ~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~ 480 (794)
.+++|++|+|++|. +..+ |..|+.+++|++|+|++ +..++. ++.+.+|++|+ .+.+..+|. .++|+
T Consensus 32 ~~~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNP----LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSC----CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred cCCCccEEEeeCCc----CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence 34478888888888 5555 45678888888888876 444332 55555555555 233333332 24455
Q ss_pred eeEecccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCC
Q 045633 481 HLIFDVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKK 560 (794)
Q Consensus 481 ~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~ 560 (794)
+|++++|.+..+|.. . ++
T Consensus 103 ~L~L~~N~l~~~~~~--~------------------------------------------------------------l~ 120 (487)
T 3oja_A 103 TLHAANNNISRVSCS--R------------------------------------------------------------GQ 120 (487)
T ss_dssp EEECCSSCCCCEEEC--C------------------------------------------------------------CS
T ss_pred EEECcCCcCCCCCcc--c------------------------------------------------------------cC
Confidence 555544444433211 1 23
Q ss_pred CCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhc-cccCccEEeecCC
Q 045633 561 NLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTA-SLDKLKRLDLAFC 639 (794)
Q Consensus 561 ~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~-~l~~L~~L~L~~~ 639 (794)
+|+.|++++|.... ..+..+..+++|+.|++++|...... |..+. .+++|+.|+|++|
T Consensus 121 ~L~~L~L~~N~l~~-------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 121 GKKNIYLANNKITM-------------------LRDLDEGCRSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp SCEEEECCSSCCCS-------------------GGGBCGGGGSSEEEEECTTSCCCEEE--GGGGGGGTTTCCEEECTTS
T ss_pred CCCEEECCCCCCCC-------------------CCchhhcCCCCCCEEECCCCCCCCcC--hHHHhhhCCcccEEecCCC
Confidence 44555555554331 11223344566777777666655532 44443 5777777777777
Q ss_pred CCCCcCCCCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCc
Q 045633 640 PRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDI 719 (794)
Q Consensus 640 ~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 719 (794)
. +..++....+++|+.|+|+++. ++.+|.. +..+++|+.|++++ +.+..++ ..+
T Consensus 180 ~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--------------------~~~l~~L~~L~Ls~-N~l~~lp---~~l 233 (487)
T 3oja_A 180 F-IYDVKGQVVFAKLKTLDLSSNK-LAFMGPE--------------------FQSAAGVTWISLRN-NKLVLIE---KAL 233 (487)
T ss_dssp C-CCEEECCCCCTTCCEEECCSSC-CCEECGG--------------------GGGGTTCSEEECTT-SCCCEEC---TTC
T ss_pred c-cccccccccCCCCCEEECCCCC-CCCCCHh--------------------HcCCCCccEEEecC-CcCcccc---hhh
Confidence 3 4555555567777777777643 4445443 34567777777776 3444433 224
Q ss_pred cCCCcccEEeeccCccC-cCCCcCccCCCCccEEEec
Q 045633 720 TIMPQIKSLMIFSCEKL-KSLPDQLLRSTTLESLEIG 755 (794)
Q Consensus 720 ~~l~~L~~L~l~~c~~l-~~ip~~~~~l~~L~~L~l~ 755 (794)
..+++|+.|++++|+.. ..+|..+..++.|+.+++.
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 46677777777777544 2455555566666666664
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=1.6e-16 Score=164.58 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=27.4
Q ss_pred CcccEEeeccCccCcCCCcCccCCCCccEEEeccCcc
Q 045633 723 PQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 723 ~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~ 759 (794)
++|+.|++++| .++.+|. +..+++|++|++++|+.
T Consensus 274 ~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence 67888888888 6777776 67788888888888864
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=9.5e-16 Score=156.70 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=57.1
Q ss_pred CCccceEEEcccCCCccccccC-ccccCccCCcEEeccC--CCcc-CccccCCCccceec--CcC-CCcc-CcccccccC
Q 045633 407 LTCLRALKIEDFGLGDKTIEIP-RGLENLIHLRYLQLSS--VEEL-PETCCELLNLQTLD--CLS-LKRL-PQGIGKLIN 478 (794)
Q Consensus 407 ~~~L~~L~l~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~--~~~l-p~~i~~L~~L~~L~--~~~-l~~l-p~~~~~L~~ 478 (794)
.+.|++|++++|. +..+| ..+..+++|++|++++ +..+ |..+.++.+|++|+ .+. +..+ |..+..+++
T Consensus 31 ~~~l~~L~l~~n~----i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 31 PAASQRIFLHGNR----ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CTTCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCc----CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 3567777777776 44554 4466777777777766 5555 44566666666666 222 5555 445666666
Q ss_pred CceeEecccccccCC-CCCCCCCCCCccC
Q 045633 479 LRHLIFDVFGVDYVP-NGFERLTGLRTLS 506 (794)
Q Consensus 479 L~~L~l~~~~l~~lp-~~i~~l~~L~~L~ 506 (794)
|++|+++.|.+..++ ..+..+++|++|+
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 666666666665553 3345555555554
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=6.2e-17 Score=184.52 Aligned_cols=367 Identities=14% Similarity=0.081 Sum_probs=204.4
Q ss_pred cCcceEEEEEeccccc-Cccccc-CCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcc-ccccCccc
Q 045633 355 QEKLRHLTLMLGLRAK-FPVSIF-DAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDK-TIEIPRGL 431 (794)
Q Consensus 355 ~~~~r~l~l~~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~lp~~i 431 (794)
...+++|.+..+.... .+..+. .+++|++|.+.+|... ....++.++..+++|++|++++|.+... ...++...
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~---~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF---STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE---EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC---CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 3467888888776543 222332 5789999999887321 1223555567899999999999884221 11233434
Q ss_pred cCccCCcEEeccCCC-ccC-----ccccCCCccceec---CcCCCccCcccccccCCceeEecc-------cccccCCCC
Q 045633 432 ENLIHLRYLQLSSVE-ELP-----ETCCELLNLQTLD---CLSLKRLPQGIGKLINLRHLIFDV-------FGVDYVPNG 495 (794)
Q Consensus 432 ~~l~~L~~L~L~~~~-~lp-----~~i~~L~~L~~L~---~~~l~~lp~~~~~L~~L~~L~l~~-------~~l~~lp~~ 495 (794)
..+++|++|++++.. .++ .-+.++.+|++|+ |..+..+|..+..+++|++|+++. +.+..++..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 477899999998742 222 2234568888888 546666777888899999998633 334455556
Q ss_pred CCCCCCCCccCceEeccccCCCCCCccCccc-ccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCC
Q 045633 496 FERLTGLRTLSGFTVARVDGEYSSKACNLEG-LGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKRED 574 (794)
Q Consensus 496 i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 574 (794)
+.++++|+.|..+. . .....+.. ...+++|+ .+++.++. +. +......+..+++|+.|+++++. .
T Consensus 261 l~~~~~L~~Ls~~~--~------~~~~~l~~~~~~~~~L~-~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~~-~- 326 (594)
T 2p1m_B 261 LSGCKELRCLSGFW--D------AVPAYLPAVYSVCSRLT-TLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDYI-E- 326 (594)
T ss_dssp HHTCTTCCEEECCB--T------CCGGGGGGGHHHHTTCC-EEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGGG-H-
T ss_pred HhcCCCcccccCCc--c------cchhhHHHHHHhhCCCC-EEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCcc-C-
Confidence 77777777772111 1 01111211 12445555 66665543 22 22233335567888888888762 1
Q ss_pred ccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecC--------CCccCCCCchhccccCccEEeecCCCCCCc--
Q 045633 575 EDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFE--------GRRLIFSSNWTASLDKLKRLDLAFCPRCEI-- 644 (794)
Q Consensus 575 ~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--------~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~-- 644 (794)
..........+++|+.|+++++. .............+++|+.|.+..+ .+..
T Consensus 327 -----------------~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~-~l~~~~ 388 (594)
T 2p1m_B 327 -----------------DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR-QMTNAA 388 (594)
T ss_dssp -----------------HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES-CCCHHH
T ss_pred -----------------HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC-CcCHHH
Confidence 11111122235677777775431 1110000111224677777755444 2221
Q ss_pred CCCCC-CCCCcceeeec-----ccccceEeCcc------cccCcccCCCccccccCCC---ccc-cCCccceeecccccc
Q 045633 645 MPPLG-KLPSLEILRIA-----EMVSVKKVGDE------FLGIGIRDHNHIHGTFSSS---SVV-AFPKLEKLDLWIMLQ 708 (794)
Q Consensus 645 l~~l~-~L~~L~~L~l~-----~~~~l~~~~~~------~~~~~~l~~~~l~~~~~~~---~~~-~~~~L~~L~l~~~~~ 708 (794)
+..+. .+++|+.|+++ +|+.++..+.. +.....++.+++++..... .+. .+++|+.|++++|.
T Consensus 389 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~- 467 (594)
T 2p1m_B 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG- 467 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-
T ss_pred HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-
Confidence 11122 36777777777 45555533321 1222344445554421111 112 37888999888754
Q ss_pred ccccccCCCCc-cCCCcccEEeeccCccCcC-CCcCccCCCCccEEEeccCcc
Q 045633 709 LEEWDFGKEDI-TIMPQIKSLMIFSCEKLKS-LPDQLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 709 l~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~-ip~~~~~l~~L~~L~l~~~~~ 759 (794)
+..... ..+ ..+++|+.|++++|+.... ++.....+++|++|++++|+.
T Consensus 468 i~~~~~--~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 468 DSDLGM--HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SSHHHH--HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CcHHHH--HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 322111 011 3589999999999965211 222345588999999999986
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=2.3e-14 Score=142.13 Aligned_cols=211 Identities=15% Similarity=0.145 Sum_probs=149.8
Q ss_pred cCcCCCccCcccccccCCceeEecccccccCCC-CCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEc
Q 045633 462 DCLSLKRLPQGIGKLINLRHLIFDVFGVDYVPN-GFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRIC 540 (794)
Q Consensus 462 ~~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~ 540 (794)
+|.+++.+|. +. .+|++|+++.|.++.+|. .++.+++|+.|++..... +..+
T Consensus 19 ~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~-----------------l~~i------- 71 (239)
T 2xwt_C 19 TCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT-----------------LQQL------- 71 (239)
T ss_dssp EECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS-----------------CCEE-------
T ss_pred EccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC-----------------ccee-------
Confidence 3766778887 43 378889988888888875 577788888776332110 1100
Q ss_pred cccCCCChhhhhhccccCCCCCceEEEEe-cCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccC
Q 045633 541 GLGNVTAADEAKNAHLEKKKNLVHLILDF-TKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLI 619 (794)
Q Consensus 541 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 619 (794)
....+..+++|+.|++++ |.... .| ...+..+++|+.|++++|....+
T Consensus 72 -----------~~~~f~~l~~L~~L~l~~~n~l~~-----i~--------------~~~f~~l~~L~~L~l~~n~l~~l- 120 (239)
T 2xwt_C 72 -----------ESHSFYNLSKVTHIEIRNTRNLTY-----ID--------------PDALKELPLLKFLGIFNTGLKMF- 120 (239)
T ss_dssp -----------CTTTEESCTTCCEEEEEEETTCCE-----EC--------------TTSEECCTTCCEEEEEEECCCSC-
T ss_pred -----------CHhHcCCCcCCcEEECCCCCCeeE-----cC--------------HHHhCCCCCCCEEeCCCCCCccc-
Confidence 011355677888888887 65431 11 23456788999999999987776
Q ss_pred CCCchhccccCcc---EEeecCCCCCCcCCC--CCCCCCcc-eeeecccccceEeCcccccCcccCCCccccccCCCccc
Q 045633 620 FSSNWTASLDKLK---RLDLAFCPRCEIMPP--LGKLPSLE-ILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVV 693 (794)
Q Consensus 620 ~~p~~~~~l~~L~---~L~L~~~~~l~~l~~--l~~L~~L~-~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 693 (794)
|. +..+++|+ .|++++|..+..++. ++.+++|+ .|+++++ .++.+|... +.
T Consensus 121 --p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~-------------------~~ 177 (239)
T 2xwt_C 121 --PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYA-------------------FN 177 (239)
T ss_dssp --CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTT-------------------TT
T ss_pred --cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhh-------------------cC
Confidence 66 67777777 999999966666665 78899999 9999875 455676542 22
Q ss_pred cCCccceeeccccccccccccCCCCccCC-CcccEEeeccCccCcCCCcCccCCCCccEEEeccCcc
Q 045633 694 AFPKLEKLDLWIMLQLEEWDFGKEDITIM-PQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 694 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~ 759 (794)
. ++|+.|++.+++.++.++. ..+..+ ++|+.|++++| .++.+|.. .+++|+.|++.+|..
T Consensus 178 ~-~~L~~L~L~~n~~l~~i~~--~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKYLTVIDK--DAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp T-CEEEEEECTTCTTCCEECT--TTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC--
T ss_pred C-CCCCEEEcCCCCCcccCCH--HHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccC
Confidence 3 7899999998766776643 345577 99999999998 68888876 588999999998865
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=6e-16 Score=160.25 Aligned_cols=200 Identities=19% Similarity=0.172 Sum_probs=110.2
Q ss_pred CccCCcEEeccC--CC-ccCccc--cCCCccceec--CcCCCccCcccccc-----cCCceeEecccccccCC-CCCCCC
Q 045633 433 NLIHLRYLQLSS--VE-ELPETC--CELLNLQTLD--CLSLKRLPQGIGKL-----INLRHLIFDVFGVDYVP-NGFERL 499 (794)
Q Consensus 433 ~l~~L~~L~L~~--~~-~lp~~i--~~L~~L~~L~--~~~l~~lp~~~~~L-----~~L~~L~l~~~~l~~lp-~~i~~l 499 (794)
++.+|++|+|++ +. .+|..+ +.+.+|++|+ .+.+..+|..++.+ ++|++|+++.|.+..+| ..++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 445555555554 32 344443 4555555555 33444444444444 55555555555555544 445555
Q ss_pred CCCCccCceEeccccCCCCCCccCcccc--cccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccc
Q 045633 500 TGLRTLSGFTVARVDGEYSSKACNLEGL--GNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDY 577 (794)
Q Consensus 500 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 577 (794)
++|++|++....... .......+ ..+++|+ .+.+... .+..........+..+++|+.|++++|....
T Consensus 173 ~~L~~L~Ls~N~l~~-----~~~~~~~~~~~~l~~L~-~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--- 242 (312)
T 1wwl_A 173 PALSTLDLSDNPELG-----ERGLISALCPLKFPTLQ-VLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRD--- 242 (312)
T ss_dssp SSCCEEECCSCTTCH-----HHHHHHHSCTTSCTTCC-EEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCS---
T ss_pred CCCCEEECCCCCcCc-----chHHHHHHHhccCCCCC-EEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCc---
Confidence 555555432221000 00000011 2333333 4443322 1122222222334567889999999887652
Q ss_pred cccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCccee
Q 045633 578 EEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEIL 657 (794)
Q Consensus 578 ~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L 657 (794)
. .....+..+++|+.|++++|....+ |.++. ++|+.|+|++| .++.+|.+..+++|+.|
T Consensus 243 --~-------------~~~~~~~~l~~L~~L~Ls~N~l~~i---p~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L 301 (312)
T 1wwl_A 243 --A-------------AGAPSCDWPSQLNSLNLSFTGLKQV---PKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNL 301 (312)
T ss_dssp --S-------------CCCSCCCCCTTCCEEECTTSCCSSC---CSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEE
T ss_pred --c-------------cchhhhhhcCCCCEEECCCCccChh---hhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEE
Confidence 0 0012344578999999999988766 77766 89999999998 45666778889999999
Q ss_pred eecccc
Q 045633 658 RIAEMV 663 (794)
Q Consensus 658 ~l~~~~ 663 (794)
++++++
T Consensus 302 ~L~~N~ 307 (312)
T 1wwl_A 302 SLKGNP 307 (312)
T ss_dssp ECTTCT
T ss_pred eccCCC
Confidence 998743
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=9.5e-15 Score=150.62 Aligned_cols=192 Identities=20% Similarity=0.218 Sum_probs=122.4
Q ss_pred cCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCce
Q 045633 406 QLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRH 481 (794)
Q Consensus 406 ~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~ 481 (794)
.+++|+.|++++|. +..+| .+..+++|++|++++ +..+|. +.++.+|++|+ .+.+..+| .+..+++|++
T Consensus 39 ~l~~L~~L~l~~~~----i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTG----VTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSC----CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HcCCcCEEEeeCCC----ccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 34456666666665 44554 356666666666665 555555 66666666666 34455554 4666777777
Q ss_pred eEecccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCC
Q 045633 482 LIFDVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKN 561 (794)
Q Consensus 482 L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 561 (794)
|+++.|.+..+|. +..+++|+.|++..+ .+..+. .+..+++
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n------------~l~~~~--------------------------~l~~l~~ 152 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLN------------QITNIS--------------------------PLAGLTN 152 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSS------------CCCCCG--------------------------GGGGCTT
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCC------------ccCcCc--------------------------cccCCCC
Confidence 7777777766653 666666666652211 000000 1334567
Q ss_pred CceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCC
Q 045633 562 LVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPR 641 (794)
Q Consensus 562 L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 641 (794)
|+.|++++|.... ...+..+++|+.|++++|..... +. +..+++|+.|++++| .
T Consensus 153 L~~L~l~~n~l~~---------------------~~~l~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~L~~N-~ 206 (308)
T 1h6u_A 153 LQYLSIGNAQVSD---------------------LTPLANLSKLTTLKADDNKISDI---SP-LASLPNLIEVHLKNN-Q 206 (308)
T ss_dssp CCEEECCSSCCCC---------------------CGGGTTCTTCCEEECCSSCCCCC---GG-GGGCTTCCEEECTTS-C
T ss_pred ccEEEccCCcCCC---------------------ChhhcCCCCCCEEECCCCccCcC---hh-hcCCCCCCEEEccCC-c
Confidence 7777777776441 11256778899999998887665 43 778999999999999 4
Q ss_pred CCcCCCCCCCCCcceeeecccccceEeCc
Q 045633 642 CEIMPPLGKLPSLEILRIAEMVSVKKVGD 670 (794)
Q Consensus 642 l~~l~~l~~L~~L~~L~l~~~~~l~~~~~ 670 (794)
+..++.+..+++|+.|+++++. +...|.
T Consensus 207 l~~~~~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 207 ISDVSPLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp CCBCGGGTTCTTCCEEEEEEEE-EECCCE
T ss_pred cCccccccCCCCCCEEEccCCe-eecCCe
Confidence 5566668889999999999754 444443
No 76
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=7e-17 Score=177.86 Aligned_cols=368 Identities=15% Similarity=0.087 Sum_probs=203.6
Q ss_pred CCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcc-ccccCccccCccCCcEEeccC--CCcc-Ccc-cc
Q 045633 379 KKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDK-TIEIPRGLENLIHLRYLQLSS--VEEL-PET-CC 453 (794)
Q Consensus 379 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~lp~~i~~l~~L~~L~L~~--~~~l-p~~-i~ 453 (794)
+++++|+++++... ......++..+++|++|++++|.+... ...+|..+..+++|++|+|++ +... +.. ..
T Consensus 3 ~~l~~L~Ls~~~l~----~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELS----DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCC----HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred ccceehhhhhcccC----chhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 57889999887422 222445578899999999999994211 125677788999999999998 4331 222 22
Q ss_pred CCC----ccceec--CcCCC-----ccCcccccccCCceeEecccccccC-----CCC-CCCCCCCCccCceEeccccCC
Q 045633 454 ELL----NLQTLD--CLSLK-----RLPQGIGKLINLRHLIFDVFGVDYV-----PNG-FERLTGLRTLSGFTVARVDGE 516 (794)
Q Consensus 454 ~L~----~L~~L~--~~~l~-----~lp~~~~~L~~L~~L~l~~~~l~~l-----p~~-i~~l~~L~~L~~~~~~~~~~~ 516 (794)
.+. +|++|+ .+.+. .+|..+..+++|++|++++|.+... ... ....++|++|++..+.- ...
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~ 157 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAA 157 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-BGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC-CHH
Confidence 344 689998 44455 4577788999999999988887632 112 22356788877543321 000
Q ss_pred CCCCccCcccccccccCCCeeEEccccCCCCh-hhhhhcccc-CCCCCceEEEEecCCCCccccccccccCcchhHHHHH
Q 045633 517 YSSKACNLEGLGNLNHLRGFLRICGLGNVTAA-DEAKNAHLE-KKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEA 594 (794)
Q Consensus 517 ~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~-~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~ 594 (794)
........+..+++|+ .+++.+.. +... .......+. ..++|+.|++++|...... ...
T Consensus 158 --~~~~l~~~l~~~~~L~-~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---------------~~~ 218 (461)
T 1z7x_W 158 --SCEPLASVLRAKPDFK-ELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN---------------CRD 218 (461)
T ss_dssp --GHHHHHHHHHHCTTCC-EEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH---------------HHH
T ss_pred --HHHHHHHHHhhCCCCC-EEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH---------------HHH
Confidence 0000011233345555 55554322 1110 011111111 2457777877777644100 122
Q ss_pred HhhhCCCCCCccEEEEeecCCCccCC---CCchhccccCccEEeecCCCCCCc-----CCC-CCCCCCcceeeecccccc
Q 045633 595 ICEALQAPPNIESLNITGFEGRRLIF---SSNWTASLDKLKRLDLAFCPRCEI-----MPP-LGKLPSLEILRIAEMVSV 665 (794)
Q Consensus 595 ~~~~l~~~~~L~~L~l~~~~~~~~~~---~p~~~~~l~~L~~L~L~~~~~l~~-----l~~-l~~L~~L~~L~l~~~~~l 665 (794)
+...+..+++|+.|++++|....... .+.+...+++|+.|++++|. +.. ++. +..+++|+.|+++++. +
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i 296 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE-L 296 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC-C
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCC-C
Confidence 34445566778888887775432100 01112246778888888773 333 232 4557778888887653 2
Q ss_pred eEeCcccccCcccCCCccccccCCCccccCCccceeecccccccccccc--CCCCccCCCcccEEeeccCccCcCC-CcC
Q 045633 666 KKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDF--GKEDITIMPQIKSLMIFSCEKLKSL-PDQ 742 (794)
Q Consensus 666 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~i-p~~ 742 (794)
...+...... ......++|+.|++++|. +..... .+..+..+++|+.|++++| .++.. +..
T Consensus 297 ~~~~~~~l~~--------------~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~ 360 (461)
T 1z7x_W 297 GDEGARLLCE--------------TLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRE 360 (461)
T ss_dssp HHHHHHHHHH--------------HHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHH
T ss_pred chHHHHHHHH--------------HhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHH
Confidence 2111100000 001234689999999863 332210 1122346799999999999 55442 222
Q ss_pred c----cC-CCCccEEEeccCccccccccccCCCCCccccccceeeecccccc
Q 045633 743 L----LR-STTLESLEIGEAPIVEQNFKKDTGKDWSKISHIPNILISGRYEQ 789 (794)
Q Consensus 743 ~----~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 789 (794)
+ .. .++|++|++++|.. +......-.....+..++..+.+.+|.+.
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDV-SDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCC-CHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHcCCCCceEEEECCCCCC-ChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 2 21 67999999999964 22000001112234566777777777654
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=2.2e-16 Score=179.97 Aligned_cols=349 Identities=16% Similarity=0.089 Sum_probs=205.1
Q ss_pred cCcceEEEEEeccccc-----CcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCc
Q 045633 355 QEKLRHLTLMLGLRAK-----FPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPR 429 (794)
Q Consensus 355 ~~~~r~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~ 429 (794)
...++.|.+..+.... ++.....+++|++|+++++. .......+..++..+++|++|++++|.. +..+|.
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~---~~~l~~ 229 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVP---LEKLAT 229 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSC---HHHHHH
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCc---HHHHHH
Confidence 3467777776555322 22233467788888888773 1111233445556688899999988842 556777
Q ss_pred cccCccCCcEEeccC---------CCccCccccCCCccceec-Cc--CCCccCcccccccCCceeEeccccccc--CCCC
Q 045633 430 GLENLIHLRYLQLSS---------VEELPETCCELLNLQTLD-CL--SLKRLPQGIGKLINLRHLIFDVFGVDY--VPNG 495 (794)
Q Consensus 430 ~i~~l~~L~~L~L~~---------~~~lp~~i~~L~~L~~L~-~~--~l~~lp~~~~~L~~L~~L~l~~~~l~~--lp~~ 495 (794)
.+..+++|++|+++. +..++..+.++++|+.|. .. ....+|..+..+++|++|+++.+.+.. ++..
T Consensus 230 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~ 309 (594)
T 2p1m_B 230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL 309 (594)
T ss_dssp HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHH
T ss_pred HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHH
Confidence 788888999998654 334556778888888883 22 224566666688999999997776553 2233
Q ss_pred CCCCCCCCccCceEeccccCCCCCCccCcccc-cccccCCCeeEEcccc-----CCCCh-hhhhhccccCCCCCceEEEE
Q 045633 496 FERLTGLRTLSGFTVARVDGEYSSKACNLEGL-GNLNHLRGFLRICGLG-----NVTAA-DEAKNAHLEKKKNLVHLILD 568 (794)
Q Consensus 496 i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~~~l~~~~~~-----~~~~~-~~~~~~~l~~~~~L~~L~l~ 568 (794)
+..+++|+.|++..+-. ...+..+ ..+++|+ .+.+..+. ..... +.........+++|+.|.++
T Consensus 310 ~~~~~~L~~L~l~~~~~--------~~~l~~l~~~~~~L~-~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~ 380 (594)
T 2p1m_B 310 LCQCPKLQRLWVLDYIE--------DAGLEVLASTCKDLR-ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF 380 (594)
T ss_dssp HTTCTTCCEEEEEGGGH--------HHHHHHHHHHCTTCC-EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HhcCCCcCEEeCcCccC--------HHHHHHHHHhCCCCC-EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh
Confidence 56788999987653310 0111111 2355566 77764321 11111 12222223357899999887
Q ss_pred ecCCCCccccccccccCcchhHHHHHHhhhC-CCCCCccEEEEe-----ecCCCccCCC----CchhccccCccEEeecC
Q 045633 569 FTKREDEDYEEAPMWMNEENEAKQEAICEAL-QAPPNIESLNIT-----GFEGRRLIFS----SNWTASLDKLKRLDLAF 638 (794)
Q Consensus 569 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~-----~~~~~~~~~~----p~~~~~l~~L~~L~L~~ 638 (794)
++... ......+ ..+++|+.|+++ +|......+. +..+..+++|+.|+|++
T Consensus 381 ~~~l~-------------------~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 381 CRQMT-------------------NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp ESCCC-------------------HHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred cCCcC-------------------HHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 77654 1222222 246899999998 2333221100 12356789999999976
Q ss_pred CCCCCcCCCCCC-CCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCC
Q 045633 639 CPRCEIMPPLGK-LPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKE 717 (794)
Q Consensus 639 ~~~l~~l~~l~~-L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 717 (794)
+-.-..++.++. +++|+.|++++|. ++.. .... ...++++|+.|++++|+- ...... .
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~--~~~~----------------l~~~~~~L~~L~L~~n~~-~~~~~~-~ 500 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL--GMHH----------------VLSGCDSLRKLEIRDCPF-GDKALL-A 500 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCC-SSHH--HHHH----------------HHHHCTTCCEEEEESCSC-CHHHHH-H
T ss_pred cccHHHHHHHHHhchhccEeeccCCC-CcHH--HHHH----------------HHhcCCCcCEEECcCCCC-cHHHHH-H
Confidence 311112233443 7899999999865 2111 1100 024689999999999863 322211 1
Q ss_pred CccCCCcccEEeeccCccCcCCCcCc-cCCCCccEEEeccC
Q 045633 718 DITIMPQIKSLMIFSCEKLKSLPDQL-LRSTTLESLEIGEA 757 (794)
Q Consensus 718 ~~~~l~~L~~L~l~~c~~l~~ip~~~-~~l~~L~~L~l~~~ 757 (794)
....+++|+.|++++|+....-...+ ..++.|+...+.++
T Consensus 501 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp TGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 12368999999999996522111112 34677766666544
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.53 E-value=8.5e-14 Score=141.94 Aligned_cols=133 Identities=22% Similarity=0.265 Sum_probs=96.3
Q ss_pred CCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC--CCCCCCcceeeecccccceEeCcccccCcc
Q 045633 600 QAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP--LGKLPSLEILRIAEMVSVKKVGDEFLGIGI 677 (794)
Q Consensus 600 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~ 677 (794)
..+++|+.|++++|....+ |..+..+++|+.|++++|. ++.++. ++.+++|+.|+++++ .++.++...
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l---~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~----- 143 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSL---PLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPPGL----- 143 (290)
T ss_dssp SCCTTCCEEECCSSCCSSC---CCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTT-----
T ss_pred CCCCcCCEEECCCCcCCcC---chhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-CCCccChhh-----
Confidence 3566777777777777665 7777778888888888874 444442 777888888888864 344444332
Q ss_pred cCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccC
Q 045633 678 RDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEA 757 (794)
Q Consensus 678 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~ 757 (794)
+..+++|+.|++++ +++..++. ..+..+++|+.|++++| .++.+|..+...++|+.|++++|
T Consensus 144 --------------~~~l~~L~~L~L~~-N~l~~l~~--~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 144 --------------LTPTPKLEKLSLAN-NNLTELPA--GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp --------------TTTCTTCCEEECTT-SCCSCCCT--TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred --------------cccccCCCEEECCC-CcCCccCH--HHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCC
Confidence 34678888888877 35665543 23457889999999998 78899998888889999999988
Q ss_pred ccc
Q 045633 758 PIV 760 (794)
Q Consensus 758 ~~l 760 (794)
|..
T Consensus 206 p~~ 208 (290)
T 1p9a_G 206 PWL 208 (290)
T ss_dssp CBC
T ss_pred Ccc
Confidence 863
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=1.6e-14 Score=158.78 Aligned_cols=210 Identities=17% Similarity=0.107 Sum_probs=156.5
Q ss_pred CCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccC
Q 045633 377 DAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCE 454 (794)
Q Consensus 377 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~ 454 (794)
.+++|++|+++++. +....+..|..+++|++|+|++|. +...++ ++.+++|++|+|++ +..+|..
T Consensus 32 ~~~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~--- 98 (487)
T 3oja_A 32 SAWNVKELDLSGNP-----LSQISAADLAPFTKLELLNLSSNV----LYETLD-LESLSTLRTLDLNNNYVQELLVG--- 98 (487)
T ss_dssp TGGGCCEEECCSSC-----CCCCCGGGGTTCTTCCEEECTTSC----CEEEEE-CTTCTTCCEEECCSSEEEEEEEC---
T ss_pred cCCCccEEEeeCCc-----CCCCCHHHHhCCCCCCEEEeeCCC----CCCCcc-cccCCCCCEEEecCCcCCCCCCC---
Confidence 34589999999883 334456678899999999999999 555544 89999999999998 7777643
Q ss_pred CCccceec--CcCCCccCcccccccCCceeEecccccccC-CCCCCCCCCCCccCceEeccccCCCCCCccCcccccccc
Q 045633 455 LLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYV-PNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLN 531 (794)
Q Consensus 455 L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 531 (794)
.+|++|+ .+.+..+|. ..+++|++|++++|.+..+ |..++.+++|+.|++... .+...
T Consensus 99 -~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N------------~l~~~---- 159 (487)
T 3oja_A 99 -PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN------------EIDTV---- 159 (487)
T ss_dssp -TTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS------------CCCEE----
T ss_pred -CCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC------------CCCCc----
Confidence 7888888 566777664 3578999999999998877 456777888877763211 11100
Q ss_pred cCCCeeEEccccCCCChhhhhhccc-cCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEE
Q 045633 532 HLRGFLRICGLGNVTAADEAKNAHL-EKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNI 610 (794)
Q Consensus 532 ~L~~~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 610 (794)
....+ ..+++|+.|++++|.+.. . .....+++|+.|++
T Consensus 160 --------------------~~~~l~~~l~~L~~L~Ls~N~l~~-----~----------------~~~~~l~~L~~L~L 198 (487)
T 3oja_A 160 --------------------NFAELAASSDTLEHLNLQYNFIYD-----V----------------KGQVVFAKLKTLDL 198 (487)
T ss_dssp --------------------EGGGGGGGTTTCCEEECTTSCCCE-----E----------------ECCCCCTTCCEEEC
T ss_pred --------------------ChHHHhhhCCcccEEecCCCcccc-----c----------------cccccCCCCCEEEC
Confidence 01112 256788899998887552 1 23445889999999
Q ss_pred eecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeecccc
Q 045633 611 TGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMV 663 (794)
Q Consensus 611 ~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~ 663 (794)
++|....+ |..+..+++|+.|+|++|. +..+|. ++.+++|+.|++++++
T Consensus 199 s~N~l~~~---~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 199 SSNKLAFM---GPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CSSCCCEE---CGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred CCCCCCCC---CHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence 99998887 7778899999999999995 445665 8889999999999865
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=2.3e-15 Score=158.02 Aligned_cols=111 Identities=20% Similarity=0.272 Sum_probs=69.1
Q ss_pred ccCCCCCceEEEEec-CCCCccccccccccCcchhHHHHHHhhhCCCCC-CccEEEEeecCC----CccCCCCchhcccc
Q 045633 556 LEKKKNLVHLILDFT-KREDEDYEEAPMWMNEENEAKQEAICEALQAPP-NIESLNITGFEG----RRLIFSSNWTASLD 629 (794)
Q Consensus 556 l~~~~~L~~L~l~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~----~~~~~~p~~~~~l~ 629 (794)
+..+++|+.|++++| ... .......+..++ +|++|++++|.. ..+ |..+..++
T Consensus 164 ~~~~~~L~~L~l~~~~~l~------------------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l---~~~~~~~~ 222 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFT------------------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDL---STLVRRCP 222 (336)
T ss_dssp HHHCTTCCEEECCCCTTCC------------------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH---HHHHHHCT
T ss_pred HhcCCCCCEEcCCCCCCcC------------------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHH---HHHHhhCC
Confidence 445667777777777 543 222334455567 888888887742 223 55666788
Q ss_pred CccEEeecCCCCCC--cCCCCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeecccc
Q 045633 630 KLKRLDLAFCPRCE--IMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIM 706 (794)
Q Consensus 630 ~L~~L~L~~~~~l~--~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 706 (794)
+|+.|++++|..+. .++.++.+++|+.|++++|..+. +..+. .+..+++|+.|++.+|
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~-----------------~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII--PETLL-----------------ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC--GGGGG-----------------GGGGCTTCCEEECTTS
T ss_pred CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC--HHHHH-----------------HHhcCCCCCEEeccCc
Confidence 88888888886443 34457777888888888775221 11110 1446777777777775
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.50 E-value=1e-13 Score=150.01 Aligned_cols=292 Identities=13% Similarity=0.034 Sum_probs=166.4
Q ss_pred HHHHHHHHh-cCCCccCCCCeEEEEE--EecCCCcHHHHHHHHhCCcccccc-----CC-eEEEEEecCCCCHHHHHHHH
Q 045633 2 EKNTLKSKL-LCESNEQQNAVQIISL--VGMGGIGKTTLAQFAYNDKDVIEN-----FD-KRIWVCVSDPFDEFRIAKAI 72 (794)
Q Consensus 2 e~~~i~~~l-~~~~~~~~~~~~~v~I--~G~gGiGKTtLa~~~~~~~~~~~~-----f~-~~~~v~~~~~~~~~~~~~~i 72 (794)
|.+++.+.+ ...........+.+.| +|++|+||||||+++++. .... +. .++|+++....+...++..+
T Consensus 30 el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 107 (412)
T 1w5s_A 30 EAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPNLYTILSLI 107 (412)
T ss_dssp HHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHH
T ss_pred HHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCCHHHHHHHH
Confidence 455666666 3211000013456667 999999999999999873 3321 22 36788877777888999999
Q ss_pred HHHhcCCCCC-CCCHHHHHHHHHhHcC--CceEEEEEeCCCCCC------ccChhhhHhhccCC---C--CCcEEEEEcc
Q 045633 73 IEGLEGSLPN-LGELNSLLEYIHTSIK--GKKFFLILDDVWTDD------HSKWEPFHNCLMNG---L--CGSRILVTTR 138 (794)
Q Consensus 73 ~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~~~l~~~l~~~---~--~gs~iivTtr 138 (794)
+.+++...+. ..+..+....+.+.+. +++++||+||++... ...+..+...+... + ....+|+||+
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~ 187 (412)
T 1w5s_A 108 VRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVAS 187 (412)
T ss_dssp HHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEE
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEec
Confidence 9988765332 2234555666666654 679999999995521 12233333333221 2 3455888887
Q ss_pred chhhhhccc---------ccceEEccCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcC------CCchHHHHH
Q 045633 139 KETVARMME---------STDVISIKELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCK------GLPLAAKTI 203 (794)
Q Consensus 139 ~~~v~~~~~---------~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~Plal~~~ 203 (794)
...+...+. ....+.+++++.+++.++|...+....... ....+.+..|++.++ |.|..+..+
T Consensus 188 ~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l 265 (412)
T 1w5s_A 188 DVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGSARRAIVA 265 (412)
T ss_dssp ETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCCHHHHHHH
T ss_pred cccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 654321111 122399999999999999976543111100 011345677888888 999755444
Q ss_pred Hhhh-c----CC---CCHHHHHHHHhhhhcccchhcccc-hhHHHhhhcCCChHHHhhhhhcccCC--CCcccChhHHHH
Q 045633 204 GSLL-R----FK---KTREEWQLILNSEMWQLEDFEKNL-LAPLQLSYNDLPPEIKRCFLYCVVFP--KDYDLDKGELVR 272 (794)
Q Consensus 204 ~~~l-~----~~---~~~~~w~~~l~~~~~~~~~~~~~~-~~~l~~sy~~L~~~~k~~fl~la~fp--~~~~i~~~~li~ 272 (794)
.... . .. -+.+.+..+.... . ...+.-.+..||+..+.++..++.+. .+..++...+..
T Consensus 266 ~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~ 335 (412)
T 1w5s_A 266 LKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQ 335 (412)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 3221 0 11 1233333333221 1 23445567889999999998888653 223444544444
Q ss_pred HHH--H-cCCccccCCcchhhhhhHHHHHHHhccCcccccC
Q 045633 273 LWM--A-QGYIEKKGNIEMEMTGGWYFDFLASRSFFQDFDE 310 (794)
Q Consensus 273 ~w~--~-~g~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~ 310 (794)
.+. + ... . .. .........+++.|.+.+++.....
T Consensus 336 ~~~~~~~~~~-~-~~-~~~~~~~~~~l~~L~~~gli~~~~~ 373 (412)
T 1w5s_A 336 RYEDASLTMY-N-VK-PRGYTQYHIYLKHLTSLGLVDAKPS 373 (412)
T ss_dssp HHHHHHHHHS-C-CC-CCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHhhc-C-CC-CCCHHHHHHHHHHHHhCCCEEeecc
Confidence 332 1 111 0 00 0112345567999999999987643
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=6.9e-14 Score=144.15 Aligned_cols=197 Identities=17% Similarity=0.214 Sum_probs=129.0
Q ss_pred ccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccc
Q 045633 452 CCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGN 529 (794)
Q Consensus 452 i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 529 (794)
..++.+|+.|+ .+.+..+| .+..+++|++|++++|.+..+|. +..+++|+.|++..+. +..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~------------l~~~-- 100 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP------------LKNV-- 100 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC------------CSCC--
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc------------CCCc--
Confidence 34566777777 44566676 47778888888887777777766 7777777777532111 1100
Q ss_pred cccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEE
Q 045633 530 LNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLN 609 (794)
Q Consensus 530 L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 609 (794)
..+..+++|+.|++++|.... ...+..+++|+.|+
T Consensus 101 ------------------------~~~~~l~~L~~L~l~~n~l~~---------------------~~~l~~l~~L~~L~ 135 (308)
T 1h6u_A 101 ------------------------SAIAGLQSIKTLDLTSTQITD---------------------VTPLAGLSNLQVLY 135 (308)
T ss_dssp ------------------------GGGTTCTTCCEEECTTSCCCC---------------------CGGGTTCTTCCEEE
T ss_pred ------------------------hhhcCCCCCCEEECCCCCCCC---------------------chhhcCCCCCCEEE
Confidence 124456777888887776541 12366778888888
Q ss_pred EeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCC
Q 045633 610 ITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSS 689 (794)
Q Consensus 610 l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~ 689 (794)
+++|..... +. +..+++|+.|++++| .+..++.+..+++|+.|+++++. ++.++.
T Consensus 136 l~~n~l~~~---~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~------------------- 190 (308)
T 1h6u_A 136 LDLNQITNI---SP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNK-ISDISP------------------- 190 (308)
T ss_dssp CCSSCCCCC---GG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-------------------
T ss_pred CCCCccCcC---cc-ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCCc-cCcChh-------------------
Confidence 888877665 43 677888888888888 45556667788888888888653 333322
Q ss_pred CccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcC
Q 045633 690 SSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQ 742 (794)
Q Consensus 690 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~ 742 (794)
+..+++|+.|+++++ ++..+. .+..+++|+.|++++| .+...|..
T Consensus 191 --l~~l~~L~~L~L~~N-~l~~~~----~l~~l~~L~~L~l~~N-~i~~~~~~ 235 (308)
T 1h6u_A 191 --LASLPNLIEVHLKNN-QISDVS----PLANTSNLFIVTLTNQ-TITNQPVF 235 (308)
T ss_dssp --GGGCTTCCEEECTTS-CCCBCG----GGTTCTTCCEEEEEEE-EEECCCEE
T ss_pred --hcCCCCCCEEEccCC-ccCccc----cccCCCCCCEEEccCC-eeecCCee
Confidence 346778888888774 444443 1447788888888887 45665543
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.49 E-value=1.8e-13 Score=139.45 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=36.4
Q ss_pred CCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeeccc
Q 045633 599 LQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEM 662 (794)
Q Consensus 599 l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~ 662 (794)
+..+++|+.|++++|....+. +..+..+++|+.|+|++|. +..+|. +..+++|+.|+++++
T Consensus 144 ~~~l~~L~~L~L~~N~l~~l~--~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLTELP--AGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTTCTTCCEEECTTSCCSCCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSC
T ss_pred cccccCCCEEECCCCcCCccC--HHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCC
Confidence 345566666666666665541 2334566777777777763 344444 555667777777653
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=3.9e-13 Score=135.84 Aligned_cols=190 Identities=22% Similarity=0.294 Sum_probs=108.9
Q ss_pred cceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCc-cccCCCccceec--CcCCCccCcc-cccccCCceeE
Q 045633 410 LRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPE-TCCELLNLQTLD--CLSLKRLPQG-IGKLINLRHLI 483 (794)
Q Consensus 410 L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~-~i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~~L~ 483 (794)
.+.++++++. +..+|..+. .+|++|+|++ +..+|. .+.++.+|++|+ .+.+..+|.. +..+++|++|+
T Consensus 18 ~~~l~~~~~~----l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 18 KNSVDCSSKK----LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTEEECTTSC----CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCEEEccCCC----CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 4455555555 444554333 3555555555 555543 455555555555 3445555544 35566666666
Q ss_pred ecccccccCCCC-CCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCC
Q 045633 484 FDVFGVDYVPNG-FERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNL 562 (794)
Q Consensus 484 l~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L 562 (794)
++.|.+..+|.. +..+++|+.|++... .+ ..+ ....+..+++|
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n------------~l------~~~------------------~~~~~~~l~~L 135 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRN------------QL------KSL------------------PPRVFDSLTKL 135 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSS------------CC------CCC------------------CTTTTTTCTTC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCC------------cc------Cee------------------CHHHhCcCcCC
Confidence 666666665533 455555555542110 00 000 01123445666
Q ss_pred ceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCC
Q 045633 563 VHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRC 642 (794)
Q Consensus 563 ~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l 642 (794)
+.|++++|.... .| ...+..+++|+.|++++|...... +..+..+++|+.|+|++| .+
T Consensus 136 ~~L~Ls~n~l~~-----~~--------------~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N-~l 193 (270)
T 2o6q_A 136 TYLSLGYNELQS-----LP--------------KGVFDKLTSLKELRLYNNQLKRVP--EGAFDKLTELKTLKLDNN-QL 193 (270)
T ss_dssp CEEECCSSCCCC-----CC--------------TTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSS-CC
T ss_pred CEEECCCCcCCc-----cC--------------HhHccCCcccceeEecCCcCcEeC--hhHhccCCCcCEEECCCC-cC
Confidence 667776665431 11 123566788888888888776651 345778888999999888 44
Q ss_pred CcCCC--CCCCCCcceeeecccc
Q 045633 643 EIMPP--LGKLPSLEILRIAEMV 663 (794)
Q Consensus 643 ~~l~~--l~~L~~L~~L~l~~~~ 663 (794)
..+|. +..+++|+.|++++++
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 194 KRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCHHHhccccCCCEEEecCCC
Confidence 55554 7778899999988754
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=3.2e-13 Score=142.07 Aligned_cols=235 Identities=17% Similarity=0.079 Sum_probs=140.1
Q ss_pred cEEeccC--CCccCccccCCCccceec--CcCCCccCcc-cccccCCceeEecccccc-cCCC-CCCCCCCCCccCceEe
Q 045633 438 RYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQG-IGKLINLRHLIFDVFGVD-YVPN-GFERLTGLRTLSGFTV 510 (794)
Q Consensus 438 ~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~~L~l~~~~l~-~lp~-~i~~l~~L~~L~~~~~ 510 (794)
+.++-++ ++++|..+. .++++|+ .++++.+|.. |.+|++|++|+++.|.+. .+|. .+.++++++++.....
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4455554 666776552 4566666 5566777653 667777777777666653 3443 3455555554332211
Q ss_pred ccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhH
Q 045633 511 ARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEA 590 (794)
Q Consensus 511 ~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~ 590 (794)
+. +. ......+..+++|+.|++++|.... .|.
T Consensus 90 N~-----------------l~------------------~l~~~~f~~l~~L~~L~l~~n~l~~-----~~~-------- 121 (350)
T 4ay9_X 90 NN-----------------LL------------------YINPEAFQNLPNLQYLLISNTGIKH-----LPD-------- 121 (350)
T ss_dssp TT-----------------CC------------------EECTTSBCCCTTCCEEEEEEECCSS-----CCC--------
T ss_pred Cc-----------------cc------------------ccCchhhhhcccccccccccccccc-----CCc--------
Confidence 11 00 0012235667778888888876541 111
Q ss_pred HHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccc-cCccEEeecCCCCCCcCCC-CCCCCCcceeeecccccceEe
Q 045633 591 KQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASL-DKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMVSVKKV 668 (794)
Q Consensus 591 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l-~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~~l~~~ 668 (794)
..+....++..|++.++.....+. +..+..+ ..++.|++++| .++.++. ....++|+.|++.+++.++.+
T Consensus 122 ------~~~~~~~~l~~l~l~~~~~i~~l~-~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 122 ------VHKIHSLQKVLLDIQDNINIHTIE-RNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEEL 193 (350)
T ss_dssp ------CTTCCBSSCEEEEEESCTTCCEEC-TTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCC
T ss_pred ------hhhcccchhhhhhhcccccccccc-ccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCC
Confidence 122334456677776543322211 2233333 45777888877 3455544 445677888888877777777
Q ss_pred CcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCC
Q 045633 669 GDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTT 748 (794)
Q Consensus 669 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~ 748 (794)
|.+. +..+++|+.|+++++ +++.++.. .+.+|+.|.+.+|.+++.+|. +..+++
T Consensus 194 ~~~~-------------------f~~l~~L~~LdLs~N-~l~~lp~~-----~~~~L~~L~~l~~~~l~~lP~-l~~l~~ 247 (350)
T 4ay9_X 194 PNDV-------------------FHGASGPVILDISRT-RIHSLPSY-----GLENLKKLRARSTYNLKKLPT-LEKLVA 247 (350)
T ss_dssp CTTT-------------------TTTEECCSEEECTTS-CCCCCCSS-----SCTTCCEEECTTCTTCCCCCC-TTTCCS
T ss_pred CHHH-------------------hccCcccchhhcCCC-CcCccChh-----hhccchHhhhccCCCcCcCCC-chhCcC
Confidence 6543 356788888888873 66666532 577888888888888888885 667888
Q ss_pred ccEEEecc
Q 045633 749 LESLEIGE 756 (794)
Q Consensus 749 L~~L~l~~ 756 (794)
|+.+++.+
T Consensus 248 L~~l~l~~ 255 (350)
T 4ay9_X 248 LMEASLTY 255 (350)
T ss_dssp CCEEECSC
T ss_pred hhhCcCCC
Confidence 88888854
No 86
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.47 E-value=1.5e-12 Score=137.38 Aligned_cols=272 Identities=13% Similarity=0.084 Sum_probs=155.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC------CHHHHHHHHHHHhcC-----------------
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF------DEFRIAKAIIEGLEG----------------- 78 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~------~~~~~~~~i~~~l~~----------------- 78 (794)
+++.|+|++|+|||||++++++ +. . ++|+++.... +...+...+...+..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~--~~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 104 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLN--ER----P-GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFL 104 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH--HS----S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGG
T ss_pred CeEEEECCCcCCHHHHHHHHHH--Hc----C-cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecce
Confidence 5899999999999999999987 32 1 7788875432 455566666655432
Q ss_pred CCC-CCCCHHHHHHHHHhHcCC-ceEEEEEeCCCCCCc------cChhhhHhhccCCCCCcEEEEEccchhh-hhc----
Q 045633 79 SLP-NLGELNSLLEYIHTSIKG-KKFFLILDDVWTDDH------SKWEPFHNCLMNGLCGSRILVTTRKETV-ARM---- 145 (794)
Q Consensus 79 ~~~-~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~~------~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~---- 145 (794)
... ......+....+.+..+. ++++||+||++..+. ..+......+....++.++|+|++.... ...
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~ 184 (350)
T 2qen_A 105 TLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKIT 184 (350)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTT
T ss_pred eeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhc
Confidence 000 113455555666555432 389999999954321 1122222222222246789999887543 111
Q ss_pred -----c-cc-cceEEccCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCCCHHHHHH
Q 045633 146 -----M-ES-TDVISIKELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKTREEWQL 218 (794)
Q Consensus 146 -----~-~~-~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~ 218 (794)
. +. ...+.+.+|+.+|+.+++.......+.... .+.+..+++.++|+|+++..++..+....+...+..
T Consensus 185 ~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~----~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~ 260 (350)
T 2qen_A 185 DYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP----ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMK 260 (350)
T ss_dssp CTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHH
Confidence 1 11 247899999999999999875432222111 345778999999999999998876432122222211
Q ss_pred -HHhhhhcccchhcccchhHHHhhhcCCChHHHhhhhhcccCCCCcccChhHHHHHHHHcCCccccCCcchhhhhhHHHH
Q 045633 219 -ILNSEMWQLEDFEKNLLAPLQLSYNDLPPEIKRCFLYCVVFPKDYDLDKGELVRLWMAQGYIEKKGNIEMEMTGGWYFD 297 (794)
Q Consensus 219 -~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~fp~~~~i~~~~li~~w~~~g~~~~~~~~~~~~~~~~~l~ 297 (794)
+.+... ......+. .+.+ . ++..+..+..+|. + ..+...+....... .. +. .......+++
T Consensus 261 ~~~~~~~---~~~~~~l~---~l~~-~-~~~~~~~l~~la~---g-~~~~~~l~~~~~~~-~~----~~-~~~~~~~~l~ 322 (350)
T 2qen_A 261 RTLEVAK---GLIMGELE---ELRR-R-SPRYVDILRAIAL---G-YNRWSLIRDYLAVK-GT----KI-PEPRLYALLE 322 (350)
T ss_dssp HHHHHHH---HHHHHHHH---HHHH-H-CHHHHHHHHHHHT---T-CCSHHHHHHHHHHT-TC----CC-CHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHH---HHHh-C-ChhHHHHHHHHHh---C-CCCHHHHHHHHHHH-hC----CC-CHHHHHHHHH
Confidence 111000 00011111 1112 2 6788889988887 2 23444444433221 10 11 1234567899
Q ss_pred HHHhccCcccccCCCCCeEEEEe-ehHHHHHH
Q 045633 298 FLASRSFFQDFDEDEEGIVTCKM-HDIVHDFA 328 (794)
Q Consensus 298 ~L~~~sll~~~~~~~~~~~~~~~-h~li~~~~ 328 (794)
.|.+.+++..... .|.+ |++++++.
T Consensus 323 ~L~~~gli~~~~~------~y~~~~p~~~~~~ 348 (350)
T 2qen_A 323 NLKKMNWIVEEDN------TYKIADPVVATVL 348 (350)
T ss_dssp HHHHTTSEEEETT------EEEESSHHHHHHH
T ss_pred HHHhCCCEEecCC------EEEEecHHHHHHH
Confidence 9999999986521 2554 67777664
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=9.5e-14 Score=141.03 Aligned_cols=119 Identities=24% Similarity=0.217 Sum_probs=70.8
Q ss_pred CCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC-ccccCccCCcEEeccC--CCccC-ccccC
Q 045633 379 KKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-RGLENLIHLRYLQLSS--VEELP-ETCCE 454 (794)
Q Consensus 379 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~--~~~lp-~~i~~ 454 (794)
+++++|+++++. +....+..|.++++|++|++++|. +..++ ..+.++++|++|++++ +..+| ..+.+
T Consensus 28 ~~l~~L~ls~n~-----l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNP-----LRHLGSYSFFSFPELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTCC-----CCEECTTTTTTCTTCSEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCccEEECCCCc-----ccccCHhHhccccCCcEEECCCCc----CCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 467777776662 222233346667777777777776 44443 3566777777777776 55554 34666
Q ss_pred CCccceec--CcCCCccCc-ccccccCCceeEeccccccc--CCCCCCCCCCCCccC
Q 045633 455 LLNLQTLD--CLSLKRLPQ-GIGKLINLRHLIFDVFGVDY--VPNGFERLTGLRTLS 506 (794)
Q Consensus 455 L~~L~~L~--~~~l~~lp~-~~~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~ 506 (794)
+.+|++|+ .+.+..++. .++.+++|++|+++.|.+.. +|..++.+++|+.|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 66666666 344555544 36666666666666666654 455555555555554
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=2.2e-13 Score=138.26 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=59.1
Q ss_pred CccceEEEcccCCCccccccCc-cccCccCCcEEeccC--CCccCc-cccCCCccceec--CcCCCccC-cccccccCCc
Q 045633 408 TCLRALKIEDFGLGDKTIEIPR-GLENLIHLRYLQLSS--VEELPE-TCCELLNLQTLD--CLSLKRLP-QGIGKLINLR 480 (794)
Q Consensus 408 ~~L~~L~l~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~--~~~lp~-~i~~L~~L~~L~--~~~l~~lp-~~~~~L~~L~ 480 (794)
+.|++|++++|. +..++. .+.++++|++|++++ +..+|. .+.++.+|++|+ .+.+..++ ..+.++++|+
T Consensus 28 ~~l~~L~ls~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCC----CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCc----ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 457777777777 555543 577777777777776 555554 466666666666 44455554 3466666666
Q ss_pred eeEecccccccCCC-CCCCCCCCCccC
Q 045633 481 HLIFDVFGVDYVPN-GFERLTGLRTLS 506 (794)
Q Consensus 481 ~L~l~~~~l~~lp~-~i~~l~~L~~L~ 506 (794)
+|+++.|.+..++. .++.+++|++|+
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEE
Confidence 66666666665543 355555555554
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=2.4e-13 Score=140.49 Aligned_cols=226 Identities=15% Similarity=0.056 Sum_probs=151.2
Q ss_pred CCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccc--cCccCCcEEeccC--CCc-cC---
Q 045633 378 AKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGL--ENLIHLRYLQLSS--VEE-LP--- 449 (794)
Q Consensus 378 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i--~~l~~L~~L~L~~--~~~-lp--- 449 (794)
...++.|.+.++......... +.. +..+++|++|++++|.+ ....|..+ +.+++|++|+|++ +.. .|
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~-~~~-~~~~~~L~~L~l~~n~l---~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 137 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVG-ALR-VLAYSRLKELTLEDLKI---TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA 137 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHH-HHH-HHHHSCCCEEEEESCCC---BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH
T ss_pred hcceeEEEEeCCcCCHHHHHH-HHH-hcccCceeEEEeeCCEe---ccchhhhhhhccCCCCCEEEeecccccchhhhhH
Confidence 345777888776443322222 222 22346699999999994 34567777 8999999999998 443 22
Q ss_pred -ccccCCCccceec--CcCCCccC-cccccccCCceeEeccccccc---CC--CCCCCCCCCCccCceEeccccCCCCCC
Q 045633 450 -ETCCELLNLQTLD--CLSLKRLP-QGIGKLINLRHLIFDVFGVDY---VP--NGFERLTGLRTLSGFTVARVDGEYSSK 520 (794)
Q Consensus 450 -~~i~~L~~L~~L~--~~~l~~lp-~~~~~L~~L~~L~l~~~~l~~---lp--~~i~~l~~L~~L~~~~~~~~~~~~~~~ 520 (794)
..+..+.+|++|+ .+.+..+| ..++.+++|++|+++.|.+.. ++ ..++.+++|++|++..+
T Consensus 138 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N---------- 207 (310)
T 4glp_A 138 ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT---------- 207 (310)
T ss_dssp HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS----------
T ss_pred HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC----------
Confidence 3456788899988 56676665 568889999999998887643 33 23467778887763211
Q ss_pred ccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCC
Q 045633 521 ACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQ 600 (794)
Q Consensus 521 ~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~ 600 (794)
.+. .........+..+++|+.|++++|..... .|.. ...+.
T Consensus 208 --~l~---------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~----~p~~------------~~~~~ 248 (310)
T 4glp_A 208 --GME---------------------TPTGVCAALAAAGVQPHSLDLSHNSLRAT----VNPS------------APRCM 248 (310)
T ss_dssp --CCC---------------------CHHHHHHHHHHHTCCCSSEECTTSCCCCC----CCSC------------CSSCC
T ss_pred --CCC---------------------chHHHHHHHHhcCCCCCEEECCCCCCCcc----chhh------------HHhcc
Confidence 111 11111111245668899999999986520 0110 11222
Q ss_pred CCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccc
Q 045633 601 APPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMV 663 (794)
Q Consensus 601 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~ 663 (794)
.+++|+.|++++|....+ |..+. ++|+.|+|++| .+..+|.+..+++|+.|++++++
T Consensus 249 ~~~~L~~L~Ls~N~l~~l---p~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQV---PKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTCCCEECCSSCCCSC---CSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred CcCcCCEEECCCCCCCch---hhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 347999999999998866 77664 89999999999 56676778889999999999743
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.45 E-value=2e-13 Score=138.06 Aligned_cols=197 Identities=22% Similarity=0.285 Sum_probs=105.4
Q ss_pred cCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcc-cccccCCc
Q 045633 406 QLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQG-IGKLINLR 480 (794)
Q Consensus 406 ~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~ 480 (794)
.++.|+.|+++++. +..++ .++.+++|++|++++ +..+| .++++.+|++|+ .+.+..+|.. ++.+++|+
T Consensus 39 ~l~~L~~L~l~~~~----i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNSD----IKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHTTCCEEECTTSC----CCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccceeeeeeCCCC----ccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34445555555554 33332 245555555555554 44432 445555555555 3344444433 45566666
Q ss_pred eeEecccccccCCCC-CCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCC
Q 045633 481 HLIFDVFGVDYVPNG-FERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKK 559 (794)
Q Consensus 481 ~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~ 559 (794)
+|+++.|.+..+|.. ++.+++|+.|++..+ .+.. + ....+..+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n------------~l~~------~------------------~~~~~~~l 156 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHN------------QLQS------L------------------PKGVFDKL 156 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSS------------CCCC------C------------------CTTTTTTC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCC------------ccCc------c------------------CHHHhccC
Confidence 666666666555433 455555555542111 0000 0 00113344
Q ss_pred CCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCC
Q 045633 560 KNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFC 639 (794)
Q Consensus 560 ~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~ 639 (794)
++|+.|++++|.... . ....+..+++|+.|++++|...... |..+..+++|+.|++++|
T Consensus 157 ~~L~~L~l~~n~l~~-----~--------------~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 157 TNLTELDLSYNQLQS-----L--------------PEGVFDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTCCEEECCSSCCCC-----C--------------CTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCcCc-----c--------------CHHHhcCCccCCEEECCCCcCCccC--HHHHhCCcCCCEEEccCC
Confidence 566666666665431 1 1123556778888888888776652 455678888999998888
Q ss_pred CCCCcCCCCCCCCCcceeeecccccceEeCcc
Q 045633 640 PRCEIMPPLGKLPSLEILRIAEMVSVKKVGDE 671 (794)
Q Consensus 640 ~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~ 671 (794)
+. .+.+++|+.|+++.+.....+|..
T Consensus 216 ~~------~~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 216 PW------DCTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CB------CCCTTTTHHHHHHHHHTGGGBBCT
T ss_pred Cc------cccCcHHHHHHHHHHhCCCcccCc
Confidence 43 345677888888765544444443
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.45 E-value=1e-12 Score=132.81 Aligned_cols=132 Identities=21% Similarity=0.269 Sum_probs=69.0
Q ss_pred CCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC--CCCCCCcceeeecccccceEeCcccccCccc
Q 045633 601 APPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP--LGKLPSLEILRIAEMVSVKKVGDEFLGIGIR 678 (794)
Q Consensus 601 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l 678 (794)
.+++|++|++++|...... +..+..+++|+.|++++|. +..++. ++.+++|++|+++++. ++.++...
T Consensus 83 ~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~------ 152 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALP--IGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGV------ 152 (270)
T ss_dssp SCTTCCEEECCSSCCCCCC--TTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT------
T ss_pred CCCCCCEEECCCCcCCcCC--HhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCc-CCccCHhH------
Confidence 3445555555555444331 2334455556666665553 222222 4555666666665532 33332221
Q ss_pred CCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcC-ccCCCCccEEEeccC
Q 045633 679 DHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQ-LLRSTTLESLEIGEA 757 (794)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~-~~~l~~L~~L~l~~~ 757 (794)
+..+++|+.|+++++ .+..++ +..+..+++|+.|++++| .++.+|.. +..+++|+.|++++|
T Consensus 153 -------------~~~l~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 153 -------------FDKLTSLKELRLYNN-QLKRVP--EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp -------------TTTCTTCCEEECCSS-CCSCCC--TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -------------ccCCcccceeEecCC-cCcEeC--hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 234566666666553 333332 122445677777777777 56666553 556777777777777
Q ss_pred cc
Q 045633 758 PI 759 (794)
Q Consensus 758 ~~ 759 (794)
|.
T Consensus 216 ~~ 217 (270)
T 2o6q_A 216 PW 217 (270)
T ss_dssp CB
T ss_pred Ce
Confidence 64
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.44 E-value=3.9e-13 Score=133.21 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=89.1
Q ss_pred cccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCc-cccCccCCcEEecc--C
Q 045633 368 RAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPR-GLENLIHLRYLQLS--S 444 (794)
Q Consensus 368 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~-~i~~l~~L~~L~L~--~ 444 (794)
...+|. + .++++.|+++++. +....+..|.++++|++|++++|.. +..+|. .+.++++|++|+++ +
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~-----l~~i~~~~~~~l~~L~~L~l~~n~~---l~~i~~~~f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETH-----LRTIPSHAFSNLPNISRIYVSIDVT---LQQLESHSFYNLSKVTHIEIRNTR 91 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCC-----CSEECTTTTTTCTTCCEEEEECCSS---CCEECTTTEESCTTCCEEEEEEET
T ss_pred ccccCC-C--CCcccEEEEeCCc-----ceEECHHHccCCCCCcEEeCCCCCC---cceeCHhHcCCCcCCcEEECCCCC
Confidence 444554 2 3478888887772 3333444577788888888888852 445544 67788888888886 3
Q ss_pred -CCccCc-cccCCCccceec--CcCCCccCcccccccCCc---eeEeccc-ccccCCCC-CCCCCCCC-ccC
Q 045633 445 -VEELPE-TCCELLNLQTLD--CLSLKRLPQGIGKLINLR---HLIFDVF-GVDYVPNG-FERLTGLR-TLS 506 (794)
Q Consensus 445 -~~~lp~-~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~ 506 (794)
+..+|. .+.++.+|++|+ .+.+..+|. +..+++|+ +|+++.| .+..+|.. +..+++|+ .|+
T Consensus 92 ~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162 (239)
T ss_dssp TCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred CeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence 777764 577888888888 556777876 77777777 8888777 88887754 67777777 665
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=6.7e-13 Score=139.65 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=61.7
Q ss_pred CccceEEEcccCCCccccccCc-cccCccCCcEEeccC--C-CccCc-cccCCCccceec---CcCCCccC-cccccccC
Q 045633 408 TCLRALKIEDFGLGDKTIEIPR-GLENLIHLRYLQLSS--V-EELPE-TCCELLNLQTLD---CLSLKRLP-QGIGKLIN 478 (794)
Q Consensus 408 ~~L~~L~l~~~~~~~~~~~lp~-~i~~l~~L~~L~L~~--~-~~lp~-~i~~L~~L~~L~---~~~l~~lp-~~~~~L~~ 478 (794)
++++.|+|++|+ ++.+|. .|.++++|++|+|++ + +.+|. .|.+|.+|+.+. ++++..+| ..+..+++
T Consensus 30 ~~l~~L~Ls~N~----i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLTK----LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESCC----CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCCEEEccCCc----CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 567888888888 777765 578888888888887 3 44654 467777766543 67788775 45788899
Q ss_pred CceeEecccccccCCC
Q 045633 479 LRHLIFDVFGVDYVPN 494 (794)
Q Consensus 479 L~~L~l~~~~l~~lp~ 494 (794)
|++|++++|.+..+|.
T Consensus 106 L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPD 121 (350)
T ss_dssp CCEEEEEEECCSSCCC
T ss_pred cccccccccccccCCc
Confidence 9999998888887764
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=9.1e-12 Score=131.75 Aligned_cols=271 Identities=11% Similarity=0.062 Sum_probs=154.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC-----CCHHHHHHHHHHHhc-------------CCC---
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP-----FDEFRIAKAIIEGLE-------------GSL--- 80 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~-----~~~~~~~~~i~~~l~-------------~~~--- 80 (794)
++|.|+|++|+|||||++++++ +... .++|+++... .+.......+.+.+. ...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~ 105 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGI 105 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTE
T ss_pred CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceE
Confidence 5899999999999999999987 3322 3678887642 344444444444331 000
Q ss_pred --C-----------CCCCHHHHHHHHHhHcCCceEEEEEeCCCCCCc---cChhhhHhhccCCCCCcEEEEEccchhhhh
Q 045633 81 --P-----------NLGELNSLLEYIHTSIKGKKFFLILDDVWTDDH---SKWEPFHNCLMNGLCGSRILVTTRKETVAR 144 (794)
Q Consensus 81 --~-----------~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~---~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 144 (794)
+ .......+...+.+.-+ ++++||+||++..+. .++..+...+....++.++|+|++......
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~ 184 (357)
T 2fna_A 106 VIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLY 184 (357)
T ss_dssp EECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHH
T ss_pred EecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHH
Confidence 0 11234455555554322 499999999954221 223333233322224678999999764311
Q ss_pred -c---------c-cc-cceEEccCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhhcCCCC
Q 045633 145 -M---------M-ES-TDVISIKELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLLRFKKT 212 (794)
Q Consensus 145 -~---------~-~~-~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~ 212 (794)
. . +. ...+.+.+|+.+|+.+++.......+... .. ...|++.++|+|+++..++..+....+
T Consensus 185 ~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~ 258 (357)
T 2fna_A 185 DYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF--KD----YEVVYEKIGGIPGWLTYFGFIYLDNKN 258 (357)
T ss_dssp HHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC--CC----HHHHHHHHCSCHHHHHHHHHHHHHHCC
T ss_pred HHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC--Cc----HHHHHHHhCCCHHHHHHHHHHHccccc
Confidence 1 1 11 25789999999999999987543211111 11 167899999999999999877643333
Q ss_pred HHHHHHHHhhhhcccchhcccchhHHH-hhh--cCCChHHHhhhhhcccCCCCcccChhHHHHHHH-HcCCccccCCcch
Q 045633 213 REEWQLILNSEMWQLEDFEKNLLAPLQ-LSY--NDLPPEIKRCFLYCVVFPKDYDLDKGELVRLWM-AQGYIEKKGNIEM 288 (794)
Q Consensus 213 ~~~w~~~l~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~k~~fl~la~fp~~~~i~~~~li~~w~-~~g~~~~~~~~~~ 288 (794)
...|..-..+ .....+...+. +.+ ..+++..+..+..+|+ +. +...+..... ..|. ...
T Consensus 259 ~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~------~~~ 321 (357)
T 2fna_A 259 LDFAINQTLE------YAKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI------EIS 321 (357)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS------CCC
T ss_pred hHHHHHHHHH------HHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC------CCC
Confidence 3333221100 00001111121 111 1678889999999988 22 4444433211 1121 011
Q ss_pred hhhhhHHHHHHHhccCcccccCCCCCeEEEE-eehHHHHH
Q 045633 289 EMTGGWYFDFLASRSFFQDFDEDEEGIVTCK-MHDIVHDF 327 (794)
Q Consensus 289 ~~~~~~~l~~L~~~sll~~~~~~~~~~~~~~-~h~li~~~ 327 (794)
......+++.|.+.+++..... .|+ .|++++++
T Consensus 322 ~~~~~~~L~~L~~~gli~~~~~------~y~f~~~~~~~~ 355 (357)
T 2fna_A 322 DSEIYNYLTQLTKHSWIIKEGE------KYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHHHHHHHTTSEEESSS------CEEESSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEecCC------EEEecCHHHHHh
Confidence 2345567999999999976532 255 46777765
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.40 E-value=7.4e-14 Score=146.48 Aligned_cols=215 Identities=17% Similarity=0.155 Sum_probs=139.3
Q ss_pred ccEEEEcccCcchhhhhhhhHHHhccC--CccceEEEcccCCCccccccCccccCccCCcEEeccC--CCc--cCccccC
Q 045633 381 LRSLILFDVTEDQSAASRGLQGLFDQL--TCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEE--LPETCCE 454 (794)
Q Consensus 381 L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~--lp~~i~~ 454 (794)
++.++++++... +..+..+ +.++.|+++++. +...+..+..+++|++|++++ +.. +|..+.+
T Consensus 49 ~~~l~l~~~~~~--------~~~~~~~~~~~l~~L~l~~n~----l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~ 116 (336)
T 2ast_B 49 WQTLDLTGKNLH--------PDVTGRLLSQGVIAFRCPRSF----MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ 116 (336)
T ss_dssp SSEEECTTCBCC--------HHHHHHHHHTTCSEEECTTCE----ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTT
T ss_pred heeeccccccCC--------HHHHHhhhhccceEEEcCCcc----ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhh
Confidence 556666655211 2234444 678888888887 555555577788888888887 432 6666777
Q ss_pred CCccceec--CcCCC-ccCcccccccCCceeEeccc-cccc--CCCCCCCCCCCCccCceEeccccCCCCCCccCccccc
Q 045633 455 LLNLQTLD--CLSLK-RLPQGIGKLINLRHLIFDVF-GVDY--VPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLG 528 (794)
Q Consensus 455 L~~L~~L~--~~~l~-~lp~~~~~L~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 528 (794)
+.+|++|+ .+.+. ..|..++.+++|++|+++++ .+.. +|..+..+++|++|++..+
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~------------------ 178 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC------------------ 178 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC------------------
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC------------------
Confidence 78888887 33343 34566777888888888665 4542 4444555666666553211
Q ss_pred ccccCCCeeEEccccCCCChhhhhhccccCCC-CCceEEEEecC--CCCccccccccccCcchhHHHHHHhhhCCCCCCc
Q 045633 529 NLNHLRGFLRICGLGNVTAADEAKNAHLEKKK-NLVHLILDFTK--REDEDYEEAPMWMNEENEAKQEAICEALQAPPNI 605 (794)
Q Consensus 529 ~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L 605 (794)
..+. +......+..++ +|+.|++++|. .. .......+..+++|
T Consensus 179 --------------~~l~--~~~~~~~~~~l~~~L~~L~l~~~~~~~~------------------~~~l~~~~~~~~~L 224 (336)
T 2ast_B 179 --------------FDFT--EKHVQVAVAHVSETITQLNLSGYRKNLQ------------------KSDLSTLVRRCPNL 224 (336)
T ss_dssp --------------TTCC--HHHHHHHHHHSCTTCCEEECCSCGGGSC------------------HHHHHHHHHHCTTC
T ss_pred --------------CCcC--hHHHHHHHHhcccCCCEEEeCCCcccCC------------------HHHHHHHHhhCCCC
Confidence 1111 111223345667 88999998873 22 23344455668899
Q ss_pred cEEEEeecCC-C-ccCCCCchhccccCccEEeecCCCCCC--cCCCCCCCCCcceeeeccc
Q 045633 606 ESLNITGFEG-R-RLIFSSNWTASLDKLKRLDLAFCPRCE--IMPPLGKLPSLEILRIAEM 662 (794)
Q Consensus 606 ~~L~l~~~~~-~-~~~~~p~~~~~l~~L~~L~L~~~~~l~--~l~~l~~L~~L~~L~l~~~ 662 (794)
+.|++++|.. . .. +..+..+++|+.|++++|..+. .+..++.+++|+.|++++|
T Consensus 225 ~~L~l~~~~~l~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 225 VHLDLSDSVMLKNDC---FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SEEECTTCTTCCGGG---GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CEEeCCCCCcCCHHH---HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9999999884 2 23 5678889999999999996433 2234778999999999987
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=3.9e-14 Score=151.61 Aligned_cols=247 Identities=17% Similarity=0.135 Sum_probs=139.0
Q ss_pred cCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccc-------cCccCCcEEec
Q 045633 370 KFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGL-------ENLIHLRYLQL 442 (794)
Q Consensus 370 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i-------~~l~~L~~L~L 442 (794)
.++..+..+++|++|+++++..... ....+...+..+++|++|+|++|.+......+|..+ ..+++|++|+|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTE-AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHH-HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHH-HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3556666778888888888733211 112234456778888888888875322122334433 67888888888
Q ss_pred cC--CCc-----cCccccCCCccceec--CcCCC-----ccCcccccc---------cCCceeEecccccc--cCC---C
Q 045633 443 SS--VEE-----LPETCCELLNLQTLD--CLSLK-----RLPQGIGKL---------INLRHLIFDVFGVD--YVP---N 494 (794)
Q Consensus 443 ~~--~~~-----lp~~i~~L~~L~~L~--~~~l~-----~lp~~~~~L---------~~L~~L~l~~~~l~--~lp---~ 494 (794)
++ +.. +|..+.++++|++|+ .+.+. .++..+..+ ++|++|++++|.+. .+| .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 87 444 667777788888887 33343 223334444 78888888777764 233 2
Q ss_pred CCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCC
Q 045633 495 GFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKRED 574 (794)
Q Consensus 495 ~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 574 (794)
.+..+++|++|++..+.. .. ..........+..+++|+.|++++|....
T Consensus 182 ~l~~~~~L~~L~L~~n~l------------~~-------------------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGI------------RP-------------------EGIEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp HHHHCTTCCEEECCSSCC------------CH-------------------HHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred HHHhCCCcCEEECcCCCC------------CH-------------------hHHHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 344555666554321110 00 00001111245566677777777776420
Q ss_pred ccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCcc--CCCCchhc--cccCccEEeecCCCCCC----cCC
Q 045633 575 EDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRL--IFSSNWTA--SLDKLKRLDLAFCPRCE----IMP 646 (794)
Q Consensus 575 ~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~p~~~~--~l~~L~~L~L~~~~~l~----~l~ 646 (794)
.....++..+..+++|+.|+|++|..... ...|.++. .+++|+.|+|++|.... .+|
T Consensus 231 ---------------~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 231 ---------------LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp ---------------HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred ---------------HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 00133445566677777777777765432 00034442 26777777777774333 244
Q ss_pred C-C-CCCCCcceeeecccc
Q 045633 647 P-L-GKLPSLEILRIAEMV 663 (794)
Q Consensus 647 ~-l-~~L~~L~~L~l~~~~ 663 (794)
. + .++++|+.|++++|.
T Consensus 296 ~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHCTTCCEEECTTSB
T ss_pred HHHHhcCCCceEEEccCCc
Confidence 3 3 456777777777654
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=1e-12 Score=134.07 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=41.6
Q ss_pred CCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccc
Q 045633 599 LQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMV 663 (794)
Q Consensus 599 l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~ 663 (794)
+..+++|+.|++++|..... +. +..+++|+.|++++| .+..++.+..+++|+.|+++++.
T Consensus 152 l~~l~~L~~L~L~~N~l~~~---~~-l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDI---VP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCC---GG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred hccCCCCCEEEccCCccccc---hh-hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 44556677777777766554 33 667778888888877 45566667778888888887643
No 98
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.36 E-value=7.8e-13 Score=133.72 Aligned_cols=202 Identities=21% Similarity=0.276 Sum_probs=122.1
Q ss_pred cCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCcc-c
Q 045633 376 FDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPET-C 452 (794)
Q Consensus 376 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~-i 452 (794)
..+++|+.|.+.++... .++. +..+++|++|++++|. +..++ .++.+++|++|++++ +..+|.. +
T Consensus 38 ~~l~~L~~L~l~~~~i~------~~~~-l~~l~~L~~L~l~~n~----l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK------SVQG-IQYLPNVRYLALGGNK----LHDIS-ALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp HHHTTCCEEECTTSCCC------CCTT-GGGCTTCCEEECTTSC----CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ccccceeeeeeCCCCcc------cccc-cccCCCCcEEECCCCC----CCCch-hhcCCCCCCEEECCCCccCccChhHh
Confidence 34566777777666211 1222 5667777777777777 44443 567777777777776 6666654 5
Q ss_pred cCCCccceec--CcCCCccCcc-cccccCCceeEecccccccCCCC-CCCCCCCCccCceEeccccCCCCCCccCccccc
Q 045633 453 CELLNLQTLD--CLSLKRLPQG-IGKLINLRHLIFDVFGVDYVPNG-FERLTGLRTLSGFTVARVDGEYSSKACNLEGLG 528 (794)
Q Consensus 453 ~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 528 (794)
+++.+|++|+ .+.+..+|.. ++.+++|++|+++.|.+..+|.. ++.+++|+.|++..+. +..
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~------------l~~-- 171 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ------------LQS-- 171 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------------CCC--
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC------------cCc--
Confidence 7777777777 4556666554 67777788888877777777644 4667777776532110 000
Q ss_pred ccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEE
Q 045633 529 NLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESL 608 (794)
Q Consensus 529 ~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L 608 (794)
+ ....+..+++|+.|++++|.... . ....+..+++|+.|
T Consensus 172 ----~------------------~~~~~~~l~~L~~L~L~~N~l~~-----~--------------~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 172 ----L------------------PEGVFDKLTQLKDLRLYQNQLKS-----V--------------PDGVFDRLTSLQYI 210 (272)
T ss_dssp ----C------------------CTTTTTTCTTCCEEECCSSCCSC-----C--------------CTTTTTTCTTCCEE
T ss_pred ----c------------------CHHHhcCCccCCEEECCCCcCCc-----c--------------CHHHHhCCcCCCEE
Confidence 0 01123455677777777776431 1 12345667888888
Q ss_pred EEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCC
Q 045633 609 NITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPS 653 (794)
Q Consensus 609 ~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~ 653 (794)
++++|... +.+++|+.|+++.|.....+|. ++.++.
T Consensus 211 ~l~~N~~~---------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 211 WLHDNPWD---------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ECCSSCBC---------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred EccCCCcc---------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 88877543 2356777788777755555554 454443
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=6.2e-14 Score=149.99 Aligned_cols=215 Identities=14% Similarity=0.117 Sum_probs=136.6
Q ss_pred hhHHHhccCCccceEEEcccCCCcc-ccccCccccCccCCcEEeccC--CC----ccCccc-------cCCCccceec--
Q 045633 399 GLQGLFDQLTCLRALKIEDFGLGDK-TIEIPRGLENLIHLRYLQLSS--VE----ELPETC-------CELLNLQTLD-- 462 (794)
Q Consensus 399 ~~~~~~~~~~~L~~L~l~~~~~~~~-~~~lp~~i~~l~~L~~L~L~~--~~----~lp~~i-------~~L~~L~~L~-- 462 (794)
.+...+..+++|++|+|++|.++.. ...++..+..+++|++|+|++ +. .+|..+ .++.+|++|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3455578899999999999984221 112455677899999999987 34 334443 6777888887
Q ss_pred CcCCCc-----cCcccccccCCceeEecccccccC-----CCCCCCC---------CCCCccCceEeccccCCCCCCccC
Q 045633 463 CLSLKR-----LPQGIGKLINLRHLIFDVFGVDYV-----PNGFERL---------TGLRTLSGFTVARVDGEYSSKACN 523 (794)
Q Consensus 463 ~~~l~~-----lp~~~~~L~~L~~L~l~~~~l~~l-----p~~i~~l---------~~L~~L~~~~~~~~~~~~~~~~~~ 523 (794)
.+.+.. +|..+..+++|++|++++|.+... +..+..+ ++|++|+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~----------------- 165 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII----------------- 165 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE-----------------
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE-----------------
Confidence 444544 566677788888888877766422 2222222 3444433
Q ss_pred cccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhh-hCCCC
Q 045633 524 LEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICE-ALQAP 602 (794)
Q Consensus 524 l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~l~~~ 602 (794)
+....-...........+..+++|+.|++++|.... .. ...... .+..+
T Consensus 166 ---------------L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~--------------~g-~~~l~~~~l~~~ 215 (386)
T 2ca6_A 166 ---------------CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP--------------EG-IEHLLLEGLAYC 215 (386)
T ss_dssp ---------------CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH--------------HH-HHHHHHTTGGGC
T ss_pred ---------------CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH--------------hH-HHHHHHHHhhcC
Confidence 322110001111122345667899999999987651 00 112333 77788
Q ss_pred CCccEEEEeecCC-----CccCCCCchhccccCccEEeecCCCCCCc----CCC-C--CCCCCcceeeecccc
Q 045633 603 PNIESLNITGFEG-----RRLIFSSNWTASLDKLKRLDLAFCPRCEI----MPP-L--GKLPSLEILRIAEMV 663 (794)
Q Consensus 603 ~~L~~L~l~~~~~-----~~~~~~p~~~~~l~~L~~L~L~~~~~l~~----l~~-l--~~L~~L~~L~l~~~~ 663 (794)
++|+.|+|++|.. ..+ |..+..+++|+.|+|++|..-.. ++. + +.+++|+.|+|++|.
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l---~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSAL---AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHH---HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CCccEEECcCCCCCcHHHHHH---HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 9999999999886 334 67788899999999999953222 222 3 458999999999865
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.35 E-value=7.1e-13 Score=136.97 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=82.8
Q ss_pred CCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCcc--CCCCchhccccCccEEe
Q 045633 558 KKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRL--IFSSNWTASLDKLKRLD 635 (794)
Q Consensus 558 ~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~p~~~~~l~~L~~L~ 635 (794)
.+++|+.|++++|.... ..+..+..+++|++|++++|..... +..+.++..+++|+.|+
T Consensus 143 ~~~~L~~L~Ls~n~l~~-------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPA-------------------FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA 203 (310)
T ss_dssp BCSCCCEEEEECCSSCC-------------------CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB
T ss_pred hccCCCEEEeeCCCcch-------------------hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE
Confidence 45566666666665431 1123455566666666666654321 00022334566666666
Q ss_pred ecCCCCCCcCCC-----CCCCCCcceeeecccccceEe-CcccccCcccCCCccccccCCCccccCCccceeeccccccc
Q 045633 636 LAFCPRCEIMPP-----LGKLPSLEILRIAEMVSVKKV-GDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQL 709 (794)
Q Consensus 636 L~~~~~l~~l~~-----l~~L~~L~~L~l~~~~~l~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 709 (794)
|++|. ++.++. ++.+++|++|+++++. ++.. |..+.. ...+++|+.|+++++ ++
T Consensus 204 Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~-----------------~~~~~~L~~L~Ls~N-~l 263 (310)
T 4glp_A 204 LRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPR-----------------CMWSSALNSLNLSFA-GL 263 (310)
T ss_dssp CCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSS-----------------CCCCTTCCCEECCSS-CC
T ss_pred CCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHh-----------------ccCcCcCCEEECCCC-CC
Confidence 66663 333332 2455666666666543 2222 332211 122356777777663 44
Q ss_pred cccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCcc
Q 045633 710 EEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 710 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~ 759 (794)
+.++. . .+++|+.|++++| .++.+|. +..+++|+.|++++|+.
T Consensus 264 ~~lp~---~--~~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 264 EQVPK---G--LPAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CSCCS---C--CCSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred Cchhh---h--hcCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCCC
Confidence 44422 1 2367777777777 5666655 45567777777777764
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.33 E-value=7.9e-13 Score=148.14 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=36.3
Q ss_pred cCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCce
Q 045633 406 QLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRH 481 (794)
Q Consensus 406 ~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~ 481 (794)
.++.|+.|++++|. +..+| .++.+++|++|+|++ +..+|. +.+|.+|+.|+ .+.+..+| .+..|++|++
T Consensus 41 ~L~~L~~L~l~~n~----i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSD----IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCC----CCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred cCCCCCEEECcCCC----CCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 34445555555555 44443 255555555555554 444443 44444444444 22333333 2444444444
Q ss_pred eEeccccccc
Q 045633 482 LIFDVFGVDY 491 (794)
Q Consensus 482 L~l~~~~l~~ 491 (794)
|+++.|.+..
T Consensus 114 L~Ls~N~l~~ 123 (605)
T 1m9s_A 114 LSLEHNGISD 123 (605)
T ss_dssp EECTTSCCCC
T ss_pred EEecCCCCCC
Confidence 4444444443
No 102
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=7.3e-11 Score=126.07 Aligned_cols=284 Identities=12% Similarity=0.005 Sum_probs=165.4
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCcccccc--------CCeEEEEEecCCC-CHHHHHHHH
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN--------FDKRIWVCVSDPF-DEFRIAKAI 72 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~--------f~~~~~v~~~~~~-~~~~~~~~i 72 (794)
+.+++..++.... .....+.|.|+|++|+||||+|+.+++ ..... ...++|+++.... +...++..+
T Consensus 28 ~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l 103 (384)
T 2qby_B 28 ILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSL 103 (384)
T ss_dssp HHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHH
Confidence 3455555554311 112456899999999999999999987 33221 3357788877766 788888888
Q ss_pred HHHhcCCCCC--CCCHHHHHHHHHhHcCCceEEEEEeCCCCCCccC-hhhhHhhccCCCCCcEEEEEccchhhhhc----
Q 045633 73 IEGLEGSLPN--LGELNSLLEYIHTSIKGKKFFLILDDVWTDDHSK-WEPFHNCLMNGLCGSRILVTTRKETVARM---- 145 (794)
Q Consensus 73 ~~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~-~~~l~~~l~~~~~gs~iivTtr~~~v~~~---- 145 (794)
+.++.+.... .....+....+.+.+..++.+|||||++...... .+.+...+.....+..+|+||+.......
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~ 183 (384)
T 2qby_B 104 AGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPR 183 (384)
T ss_dssp HHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHH
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHH
Confidence 8888433221 2234566777777777666699999995422211 12202222222257789999987532111
Q ss_pred c--cccceEEccCCChHhHHHHHHHHhhCC-CCCCChhHHHHHHHHHHhhcC---CCch-HHHHHHhhh--c---CCCCH
Q 045633 146 M--ESTDVISIKELSEHECWSLFKRFAFSG-RSPTDCEQLEEIGRKIVGKCK---GLPL-AAKTIGSLL--R---FKKTR 213 (794)
Q Consensus 146 ~--~~~~~~~l~~l~~~ea~~Lf~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~l--~---~~~~~ 213 (794)
. .....+.+++++.++..+++...+... ...... .+..+.+++.++ |.|. |+.++.... . ..-+.
T Consensus 184 l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~ 260 (384)
T 2qby_B 184 VLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRK 260 (384)
T ss_dssp HHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCH
T ss_pred HHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCH
Confidence 1 112389999999999999999875421 111111 233455666666 8876 444433222 1 12256
Q ss_pred HHHHHHHhhhhcccchhcccchhHHHhhhcCCChHHHhhhhhcccCCCCcccChhHHH--HHHHHcCCccccCCcchhhh
Q 045633 214 EEWQLILNSEMWQLEDFEKNLLAPLQLSYNDLPPEIKRCFLYCVVFPKDYDLDKGELV--RLWMAQGYIEKKGNIEMEMT 291 (794)
Q Consensus 214 ~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~fp~~~~i~~~~li--~~w~~~g~~~~~~~~~~~~~ 291 (794)
+.+..++.... ...+..+++.|+++.+..+..++....+ ..+. ..-+++.+- . .......
T Consensus 261 ~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~-----~~~~~~~~~~~~~~g--~-~~~~~~~ 322 (384)
T 2qby_B 261 EHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDV-----MSAHKMYTDLCNKFK--Q-KPLSYRR 322 (384)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBH-----HHHHHHHHHHHHHTT--C-CCCCHHH
T ss_pred HHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhccc-----ChHHHHHHHHHHHcC--C-CCCCHHH
Confidence 67766655421 2346677889998888877766651110 1111 112222111 0 1112344
Q ss_pred hhHHHHHHHhccCcccccC
Q 045633 292 GGWYFDFLASRSFFQDFDE 310 (794)
Q Consensus 292 ~~~~l~~L~~~sll~~~~~ 310 (794)
...++..|.+.+++.....
T Consensus 323 ~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 323 FSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEec
Confidence 5667899999999987543
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.30 E-value=8.9e-12 Score=119.10 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=113.3
Q ss_pred cCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEee
Q 045633 557 EKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDL 636 (794)
Q Consensus 557 ~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L 636 (794)
..+++|+.|+++++...+ .+.+..+++|+.|++++|.... +..+..+++|+.|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~---------------------l~~l~~l~~L~~L~l~~n~~~~----~~~l~~l~~L~~L~l 95 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD---------------------LTGIEYAHNIKDLTINNIHATN----YNPISGLSNLERLRI 95 (197)
T ss_dssp HHHHTCCEEEEESSCCSC---------------------CTTGGGCTTCSEEEEESCCCSC----CGGGTTCTTCCEEEE
T ss_pred hhcCCccEEeccCCCccC---------------------hHHHhcCCCCCEEEccCCCCCc----chhhhcCCCCCEEEe
Confidence 345788999999887541 1145667899999999985543 457888999999999
Q ss_pred cCCCCCC-cCCCCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccC
Q 045633 637 AFCPRCE-IMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFG 715 (794)
Q Consensus 637 ~~~~~l~-~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 715 (794)
++|.... .++.++.+++|+.|++++|......+.. +..+++|+.|+++++..+..++
T Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~--------------------l~~l~~L~~L~L~~n~~i~~~~-- 153 (197)
T 4ezg_A 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK--------------------INTLPKVNSIDLSYNGAITDIM-- 153 (197)
T ss_dssp ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH--------------------HTTCSSCCEEECCSCTBCCCCG--
T ss_pred ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH--------------------HhhCCCCCEEEccCCCCccccH--
Confidence 9985443 3555889999999999986422212211 4578999999999976566664
Q ss_pred CCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCcc
Q 045633 716 KEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 716 ~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~ 759 (794)
.+..+++|+.|++++| .++.++ .+..+++|++|++++|+.
T Consensus 154 --~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 154 --PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp --GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC--
T ss_pred --hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCccc
Confidence 3558899999999999 677887 577899999999999873
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.29 E-value=4.9e-12 Score=129.01 Aligned_cols=127 Identities=22% Similarity=0.229 Sum_probs=84.8
Q ss_pred CCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccccCccc
Q 045633 599 LQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIR 678 (794)
Q Consensus 599 l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l 678 (794)
+..+++|+.|++++|....+ | .+..+++|+.|++++| .+..++.+..+++|+.|++++|. ++.+
T Consensus 86 l~~l~~L~~L~l~~n~l~~~---~-~l~~l~~L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n~-l~~~---------- 149 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDL---S-SLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNK-ITDI---------- 149 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCG---G-GGTTCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCC----------
T ss_pred cccCCCCCEEECCCCcCCCC---h-hhccCCCCCEEECCCC-cCCCChhhcCCCCCCEEEccCCc-CCcc----------
Confidence 45566666666666655443 3 2556666666666666 34444555666666666666542 2222
Q ss_pred CCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCc
Q 045633 679 DHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAP 758 (794)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~ 758 (794)
..+..+++|+.|+++++ ++..+.. +..+++|+.|++++| .++.+|. +..+++|+.|++++|+
T Consensus 150 -----------~~l~~l~~L~~L~L~~N-~l~~~~~----l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 150 -----------TVLSRLTKLDTLSLEDN-QISDIVP----LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp -----------GGGGGCTTCSEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred -----------hhhccCCCCCEEEccCC-ccccchh----hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence 12567889999999885 5555432 557889999999998 6888875 7778999999999987
Q ss_pred c
Q 045633 759 I 759 (794)
Q Consensus 759 ~ 759 (794)
.
T Consensus 212 i 212 (291)
T 1h6t_A 212 C 212 (291)
T ss_dssp E
T ss_pred c
Confidence 5
No 105
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.27 E-value=1.7e-10 Score=123.33 Aligned_cols=287 Identities=13% Similarity=0.047 Sum_probs=165.2
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCcccccc------CCeEEEEEecCCCCHHHHHHHHHHH
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN------FDKRIWVCVSDPFDEFRIAKAIIEG 75 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~------f~~~~~v~~~~~~~~~~~~~~i~~~ 75 (794)
+.+++..++.... .....+.+.|+|++|+||||+|+.+++ ..... -..++|+++....+...+...++.+
T Consensus 27 ~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 102 (387)
T 2v1u_A 27 ELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYRVASAIAEA 102 (387)
T ss_dssp HHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHH
Confidence 3445555553221 123556888999999999999999987 33221 1246788888888888999999999
Q ss_pred hcCCCCCC-CCHHHHHHHHHhHc--CCceEEEEEeCCCCCCcc--Chhhh---HhhccCC--CCCcEEEEEccchhhhhc
Q 045633 76 LEGSLPNL-GELNSLLEYIHTSI--KGKKFFLILDDVWTDDHS--KWEPF---HNCLMNG--LCGSRILVTTRKETVARM 145 (794)
Q Consensus 76 l~~~~~~~-~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~~~--~~~~l---~~~l~~~--~~gs~iivTtr~~~v~~~ 145 (794)
++...+.. ....+....+...+ .+++.+||+|+++..... ..+.+ ....... ..+..+|.||+.......
T Consensus 103 l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~ 182 (387)
T 2v1u_A 103 VGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVEN 182 (387)
T ss_dssp HSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhh
Confidence 87643322 23555566666666 356899999999542211 11222 2222211 345678888876532111
Q ss_pred c-----cc--cceEEccCCChHhHHHHHHHHhhC--CCCCCChhHHHHHHHHHHhhcC---CCch-HHHHHHhhh---c-
Q 045633 146 M-----ES--TDVISIKELSEHECWSLFKRFAFS--GRSPTDCEQLEEIGRKIVGKCK---GLPL-AAKTIGSLL---R- 208 (794)
Q Consensus 146 ~-----~~--~~~~~l~~l~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~l---~- 208 (794)
+ .. ...+.+++++.++..+++...+.. ...... .+..+.+++.++ |.|. ++.++..+. .
T Consensus 183 l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 183 LEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD----PDVVPLCAALAAREHGDARRALDLLRVAGEIAER 258 (387)
T ss_dssp SCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC----SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC----HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 1 11 247899999999999999887542 111111 223455666676 9994 333332221 1
Q ss_pred -C--CCCHHHHHHHHhhhhcccchhcccchhHHHhhhcCCChHHHhhhhhccc-CCCCcccChhHHHHHH--HHcCCccc
Q 045633 209 -F--KKTREEWQLILNSEMWQLEDFEKNLLAPLQLSYNDLPPEIKRCFLYCVV-FPKDYDLDKGELVRLW--MAQGYIEK 282 (794)
Q Consensus 209 -~--~~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~-fp~~~~i~~~~li~~w--~~~g~~~~ 282 (794)
. .-+.+.+..++.... ...+.-++..|+++.+..+..++. +...-.+....+.+.. +++..-
T Consensus 259 ~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 326 (387)
T 2v1u_A 259 RREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-- 326 (387)
T ss_dssp TTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT--
T ss_pred cCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC--
Confidence 1 125566665554321 224556778999988887776663 3222234444333322 111110
Q ss_pred cCCcchhhhhhHHHHHHHhccCccccc
Q 045633 283 KGNIEMEMTGGWYFDFLASRSFFQDFD 309 (794)
Q Consensus 283 ~~~~~~~~~~~~~l~~L~~~sll~~~~ 309 (794)
...........+++.|...+++....
T Consensus 327 -~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 327 -LEHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp -CCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred -CCCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 01112345667899999999998754
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.26 E-value=7.3e-12 Score=124.91 Aligned_cols=155 Identities=18% Similarity=0.177 Sum_probs=119.1
Q ss_pred CCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCC
Q 045633 560 KNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFC 639 (794)
Q Consensus 560 ~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~ 639 (794)
.+++.|+++++.... .....+..+++|+.|++++|...... |..+..+++|+.|+|++|
T Consensus 35 ~~l~~L~L~~n~l~~-------------------~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 35 ADTEKLDLQSTGLAT-------------------LSDATFRGLTKLTWLNLDYNQLQTLS--AGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TTCCEEECTTSCCCC-------------------CCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTS
T ss_pred CCCCEEEccCCCcCc-------------------cCHhHhcCcccCCEEECCCCcCCccC--HhHhccCCcCCEEECCCC
Confidence 478888888887541 11235778899999999999887762 566788999999999999
Q ss_pred CCCCcCCC--CCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCC
Q 045633 640 PRCEIMPP--LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKE 717 (794)
Q Consensus 640 ~~l~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 717 (794)
. +..++. ++.+++|++|+++++ .++.++... +..+++|+.|+++++ ++..++. .
T Consensus 94 ~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-------------------~~~l~~L~~L~Ls~N-~l~~~~~--~ 149 (251)
T 3m19_A 94 Q-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGV-------------------FDRLTKLKELRLNTN-QLQSIPA--G 149 (251)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT-------------------TTTCTTCCEEECCSS-CCCCCCT--T
T ss_pred c-ccccChhHhcccCCCCEEEcCCC-cCCCcChhH-------------------hccCCcccEEECcCC-cCCccCH--H
Confidence 5 445543 788999999999975 455554432 457899999999984 6665543 3
Q ss_pred CccCCCcccEEeeccCccCcCCCc-CccCCCCccEEEeccCccc
Q 045633 718 DITIMPQIKSLMIFSCEKLKSLPD-QLLRSTTLESLEIGEAPIV 760 (794)
Q Consensus 718 ~~~~l~~L~~L~l~~c~~l~~ip~-~~~~l~~L~~L~l~~~~~l 760 (794)
.+..+++|+.|++++| .++.+|. .+..+++|++|++++|+.-
T Consensus 150 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred HcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 4568899999999999 6777765 5778999999999999864
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=3e-11 Score=133.73 Aligned_cols=43 Identities=7% Similarity=-0.015 Sum_probs=21.9
Q ss_pred cceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCcc
Q 045633 698 LEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLL 744 (794)
Q Consensus 698 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~ 744 (794)
|+.|++++ +++..++ ..+..+++|+.|++++|+....+|..+.
T Consensus 209 L~~L~Ls~-N~l~~lp---~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 209 EIFFRCRE-NRITHIP---ENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CEEEECCS-SCCCCCC---GGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred ceEEecCC-CcceecC---HHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 35555555 2344332 2233566777777777754444554433
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=4.9e-12 Score=140.03 Aligned_cols=176 Identities=18% Similarity=0.188 Sum_probs=116.3
Q ss_pred ccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEe
Q 045633 409 CLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIF 484 (794)
Q Consensus 409 ~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l 484 (794)
+|+.|++++|. +..+|..+. ++|++|+|++ +..+| ..+.+|++|+ .+.+..+|. +.+ +|++|++
T Consensus 60 ~L~~L~Ls~n~----L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLN----LSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSC----CSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCC----CCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 78888888888 666777663 7888888887 77888 4577888888 556777887 655 8888888
Q ss_pred cccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCce
Q 045633 485 DVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVH 564 (794)
Q Consensus 485 ~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 564 (794)
+.|.+..+|. .+++|+.|++..+ .+.. +. . .+++|+.
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N------------~l~~------lp-------------------~---~l~~L~~ 164 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNN------------QLTM------LP-------------------E---LPTSLEV 164 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSS------------CCSC------CC-------------------C---CCTTCCE
T ss_pred CCCcCCCCCC---cCccccEEeCCCC------------ccCc------CC-------------------C---cCCCcCE
Confidence 8888888876 5677777753211 1111 00 0 2356777
Q ss_pred EEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCc-------cEEeec
Q 045633 565 LILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKL-------KRLDLA 637 (794)
Q Consensus 565 L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L-------~~L~L~ 637 (794)
|++++|.+.. +| . +. ++|+.|++++|....+ |. +.. +| +.|+|+
T Consensus 165 L~Ls~N~L~~-----lp---------------~-l~--~~L~~L~Ls~N~L~~l---p~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 165 LSVRNNQLTF-----LP---------------E-LP--ESLEALDVSTNLLESL---PA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp EECCSSCCSC-----CC---------------C-CC--TTCCEEECCSSCCSSC---CC-CC----------CCEEEECC
T ss_pred EECCCCCCCC-----cc---------------h-hh--CCCCEEECcCCCCCch---hh-HHH--hhhcccccceEEecC
Confidence 7777776441 11 1 22 6788888888777655 55 433 56 888888
Q ss_pred CCCCCCcCCC-CCCCCCcceeeecccccceEeC
Q 045633 638 FCPRCEIMPP-LGKLPSLEILRIAEMVSVKKVG 669 (794)
Q Consensus 638 ~~~~l~~l~~-l~~L~~L~~L~l~~~~~l~~~~ 669 (794)
+| .+..+|. +..+++|+.|+|++++-...+|
T Consensus 216 ~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 216 EN-RITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp SS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred CC-cceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 87 4455665 6668888888888765333333
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=1.2e-11 Score=138.70 Aligned_cols=128 Identities=22% Similarity=0.228 Sum_probs=81.4
Q ss_pred CCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccccCccc
Q 045633 599 LQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGIR 678 (794)
Q Consensus 599 l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l 678 (794)
+..+++|+.|+|++|....+ | .+..+++|+.|+|++|. +..++.+..|++|+.|+|++|. +..+
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l---~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~l---------- 146 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDL---S-SLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNK-ITDI---------- 146 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCC---T-TSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSC-CCCC----------
T ss_pred hccCCCCCEEECcCCCCCCC---h-hhccCCCCCEEEecCCC-CCCCccccCCCccCEEECCCCc-cCCc----------
Confidence 34455566666655554432 2 35555666666666552 3344445555666666665532 2222
Q ss_pred CCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCc
Q 045633 679 DHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAP 758 (794)
Q Consensus 679 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~ 758 (794)
..+..+++|+.|+|+++ .+..+.. +..+++|+.|+|++| .+..+|. +..+++|+.|++++|+
T Consensus 147 -----------~~l~~l~~L~~L~Ls~N-~l~~~~~----l~~l~~L~~L~Ls~N-~i~~l~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 147 -----------TVLSRLTKLDTLSLEDN-QISDIVP----LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp -----------GGGGSCTTCSEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCSEE
T ss_pred -----------hhhcccCCCCEEECcCC-cCCCchh----hccCCCCCEEECcCC-CCCCChH-HccCCCCCEEEccCCc
Confidence 12567889999999885 4544432 557899999999998 6777764 7778999999999987
Q ss_pred cc
Q 045633 759 IV 760 (794)
Q Consensus 759 ~l 760 (794)
..
T Consensus 209 l~ 210 (605)
T 1m9s_A 209 CL 210 (605)
T ss_dssp EE
T ss_pred Cc
Confidence 64
No 110
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.22 E-value=2.9e-10 Score=121.64 Aligned_cols=290 Identities=14% Similarity=0.081 Sum_probs=168.3
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccC-CeEEEEEecCCCCHHHHHHHHHHHhcCCC
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDPFDEFRIAKAIIEGLEGSL 80 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~~~~ 80 (794)
+.+++..++...........+.+.|+|++|+||||+|+.+++ ...... ..++|+++....+...+...++..++...
T Consensus 25 ~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~ 102 (389)
T 1fnn_A 25 QLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPF 102 (389)
T ss_dssp HHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccC
Confidence 345566655532110112334889999999999999999987 343331 35778888777788889999998886543
Q ss_pred CC-CCCHHHHHHHHHhHc--CCceEEEEEeCCCCCCccChhhhHhhccCCC----CCcEEEEEccchhhhhccc------
Q 045633 81 PN-LGELNSLLEYIHTSI--KGKKFFLILDDVWTDDHSKWEPFHNCLMNGL----CGSRILVTTRKETVARMME------ 147 (794)
Q Consensus 81 ~~-~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~v~~~~~------ 147 (794)
+. .....+....+...+ .+++.+||+|+++..+......+...+.... .+..||++|+.......+.
T Consensus 103 ~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r 182 (389)
T 1fnn_A 103 PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGI 182 (389)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhc
Confidence 32 223455555555554 3668999999996654444555555443211 3667888887654332211
Q ss_pred -ccceEEccCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhc---------CCCchHHHHHHh-hhc-----CC-
Q 045633 148 -STDVISIKELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKC---------KGLPLAAKTIGS-LLR-----FK- 210 (794)
Q Consensus 148 -~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~-~l~-----~~- 210 (794)
....+.+++++.++..+++...+....... ....+....+++.+ +|.|..+..+.. ... ..
T Consensus 183 ~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~ 260 (389)
T 1fnn_A 183 MGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRK 260 (389)
T ss_dssp HTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 123699999999999999987754311000 11134566677777 788754433322 111 11
Q ss_pred -CCHHHHHHHHhhhhcccchhcccchhHHHhhhcCCChHHHhhhhhcccCC---CCcccChhHHHHHHHH----cCCccc
Q 045633 211 -KTREEWQLILNSEMWQLEDFEKNLLAPLQLSYNDLPPEIKRCFLYCVVFP---KDYDLDKGELVRLWMA----QGYIEK 282 (794)
Q Consensus 211 -~~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~fp---~~~~i~~~~li~~w~~----~g~~~~ 282 (794)
-+.+....+.... ....+.-.+..|+.+.+.++..++.+. .+..+....+...+.. .|. ..
T Consensus 261 ~i~~~~v~~~~~~~----------~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~ 329 (389)
T 1fnn_A 261 HIAPEDVRKSSKEV----------LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE-RP 329 (389)
T ss_dssp SCCHHHHHHHHHHH----------SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC-CC
T ss_pred CcCHHHHHHHHHHH----------hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC-CC
Confidence 1233333332221 122233445678888887777776543 2223444555443322 121 00
Q ss_pred cCCcchhhhhhHHHHHHHhccCcccccC
Q 045633 283 KGNIEMEMTGGWYFDFLASRSFFQDFDE 310 (794)
Q Consensus 283 ~~~~~~~~~~~~~l~~L~~~sll~~~~~ 310 (794)
-.......++..|.+.+++.....
T Consensus 330 ----~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 330 ----RVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp ----CCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred ----CCHHHHHHHHHHHHhCCCeEEeee
Confidence 112345567999999999988654
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.22 E-value=2.5e-11 Score=121.02 Aligned_cols=143 Identities=27% Similarity=0.326 Sum_probs=72.4
Q ss_pred cCcceEEEEEecccccCcc-cccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC-cccc
Q 045633 355 QEKLRHLTLMLGLRAKFPV-SIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-RGLE 432 (794)
Q Consensus 355 ~~~~r~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~i~ 432 (794)
...++.|.+..+.....++ .+..+++|++|+++++. +....+..|..+++|++|++++|. +..+| ..+.
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~ 104 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-----LQTLSAGVFDDLTELGTLGLANNQ----LASLPLGVFD 104 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-----CCCCCTTTTTTCTTCCEEECTTSC----CCCCCTTTTT
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-----CCccCHhHhccCCcCCEEECCCCc----ccccChhHhc
Confidence 3445555555555444333 34455555555555552 222233345555555555555555 33443 2345
Q ss_pred CccCCcEEeccC--CCccCcc-ccCCCccceec--CcCCCccCc-ccccccCCceeEecccccccCCC-CCCCCCCCCcc
Q 045633 433 NLIHLRYLQLSS--VEELPET-CCELLNLQTLD--CLSLKRLPQ-GIGKLINLRHLIFDVFGVDYVPN-GFERLTGLRTL 505 (794)
Q Consensus 433 ~l~~L~~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~lp~-~~~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L 505 (794)
.+++|++|+|++ +..+|.. +.++.+|++|+ .+.+..+|. .++.+++|++|+++.|.+..+|. .+..+++|+.|
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 555555555555 5555543 35555555555 344555544 35555555555555555555543 34555555555
Q ss_pred C
Q 045633 506 S 506 (794)
Q Consensus 506 ~ 506 (794)
+
T Consensus 185 ~ 185 (251)
T 3m19_A 185 T 185 (251)
T ss_dssp E
T ss_pred E
Confidence 4
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.21 E-value=4.3e-11 Score=114.35 Aligned_cols=142 Identities=20% Similarity=0.240 Sum_probs=116.0
Q ss_pred ccCcceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccC
Q 045633 354 CQEKLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLEN 433 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~ 433 (794)
....++.+.+..+.+..++ .+..+++|++|+++++.. ..++ .+..+++|++|++++|.+ ....|..++.
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~------~~~~-~l~~l~~L~~L~l~~n~l---~~~~~~~l~~ 110 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA------TNYN-PISGLSNLERLRIMGKDV---TSDKIPNLSG 110 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC------SCCG-GGTTCTTCCEEEEECTTC---BGGGSCCCTT
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC------Ccch-hhhcCCCCCEEEeECCcc---CcccChhhcC
Confidence 4567899999998888777 688899999999998832 1222 478899999999999993 2236788999
Q ss_pred ccCCcEEeccC--CCc-cCccccCCCccceec--CcC-CCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCc
Q 045633 434 LIHLRYLQLSS--VEE-LPETCCELLNLQTLD--CLS-LKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSG 507 (794)
Q Consensus 434 l~~L~~L~L~~--~~~-lp~~i~~L~~L~~L~--~~~-l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~ 507 (794)
+++|++|++++ +.. .|..++++.+|++|+ .+. +..+| .+..+++|++|++++|.+..++ .+..+++|+.|++
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYA 188 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEe
Confidence 99999999998 554 677899999999999 444 78887 6899999999999999998887 7888888888874
Q ss_pred e
Q 045633 508 F 508 (794)
Q Consensus 508 ~ 508 (794)
.
T Consensus 189 ~ 189 (197)
T 4ezg_A 189 F 189 (197)
T ss_dssp C
T ss_pred e
Confidence 3
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.18 E-value=1.8e-11 Score=122.60 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=103.0
Q ss_pred cCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCce
Q 045633 406 QLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRH 481 (794)
Q Consensus 406 ~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~ 481 (794)
.+..+..++++++. +..++ .+..+.+|++|++++ +..+| .+..+.+|+.|+ .+.+..+|. +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~----i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQS----VTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSC----TTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCE
T ss_pred HHHHHHHHHhcCCC----ccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCE
Confidence 34446666677666 55555 466777777777776 55555 455555555555 344555554 556666666
Q ss_pred eEecccccccCCCCCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCC
Q 045633 482 LIFDVFGVDYVPNGFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKN 561 (794)
Q Consensus 482 L~l~~~~l~~lp~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 561 (794)
|++++|.+..+|.... ++
T Consensus 90 L~L~~N~l~~l~~~~~--------------------------------------------------------------~~ 107 (263)
T 1xeu_A 90 LSVNRNRLKNLNGIPS--------------------------------------------------------------AC 107 (263)
T ss_dssp EECCSSCCSCCTTCCC--------------------------------------------------------------SS
T ss_pred EECCCCccCCcCcccc--------------------------------------------------------------Cc
Confidence 6665555544432111 34
Q ss_pred CceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCC
Q 045633 562 LVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPR 641 (794)
Q Consensus 562 L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~ 641 (794)
|+.|++++|.... .+.+..+++|+.|++++|..... | .+..+++|+.|++++|.
T Consensus 108 L~~L~L~~N~l~~---------------------~~~l~~l~~L~~L~Ls~N~i~~~---~-~l~~l~~L~~L~L~~N~- 161 (263)
T 1xeu_A 108 LSRLFLDNNELRD---------------------TDSLIHLKNLEILSIRNNKLKSI---V-MLGFLSKLEVLDLHGNE- 161 (263)
T ss_dssp CCEEECCSSCCSB---------------------SGGGTTCTTCCEEECTTSCCCBC---G-GGGGCTTCCEEECTTSC-
T ss_pred ccEEEccCCccCC---------------------ChhhcCcccccEEECCCCcCCCC---h-HHccCCCCCEEECCCCc-
Confidence 4555555554331 12355677888888888877665 4 57788999999999884
Q ss_pred CCcCCCCCCCCCcceeeecccc
Q 045633 642 CEIMPPLGKLPSLEILRIAEMV 663 (794)
Q Consensus 642 l~~l~~l~~L~~L~~L~l~~~~ 663 (794)
+..++.+..+++|+.|+++++.
T Consensus 162 i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 162 ITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCBCTTSTTCCCCCEEEEEEEE
T ss_pred CcchHHhccCCCCCEEeCCCCc
Confidence 4555778889999999998754
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.18 E-value=7.7e-12 Score=132.24 Aligned_cols=87 Identities=13% Similarity=0.006 Sum_probs=52.3
Q ss_pred CCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCC-CCccEEEEeecCCCccC--CCCchhcc-ccCccEEee
Q 045633 561 NLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAP-PNIESLNITGFEGRRLI--FSSNWTAS-LDKLKRLDL 636 (794)
Q Consensus 561 ~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~--~~p~~~~~-l~~L~~L~L 636 (794)
+|+.|++++|.... .+ ...+...+... ++|+.|++++|...... ..+..+.. .++|+.|+|
T Consensus 168 ~L~~L~Ls~n~l~~-----~~----------~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 168 NVNSLNLRGNNLAS-----KN----------CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp TCCEEECTTSCGGG-----SC----------HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred cccEeeecCCCCch-----hh----------HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 78888888776431 00 12233344455 48888888888765410 00334444 358888888
Q ss_pred cCCCCCCcCC------CCCCCCCcceeeecccc
Q 045633 637 AFCPRCEIMP------PLGKLPSLEILRIAEMV 663 (794)
Q Consensus 637 ~~~~~l~~l~------~l~~L~~L~~L~l~~~~ 663 (794)
++|. +...+ .+..+++|+.|++++|.
T Consensus 233 s~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 233 CLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred cCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 8884 33322 24677888888888764
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.18 E-value=4.7e-11 Score=116.95 Aligned_cols=139 Identities=28% Similarity=0.421 Sum_probs=113.0
Q ss_pred eEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCc-cccCccCC
Q 045633 359 RHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPR-GLENLIHL 437 (794)
Q Consensus 359 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~-~i~~l~~L 437 (794)
..+.........+|..+. ++|+.|+++++. +....+..|..+++|++|+|++|. +..+|. .+..+++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~L~~N~----l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQ-----ITKLEPGVFDSLINLKELYLGSNQ----LGALPVGVFDSLTQL 90 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSC----CCCCCTTTTTTCTTC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCc-----cCccCHHHhhCccCCcEEECCCCC----CCCcChhhcccCCCc
Confidence 345555555666676543 899999999883 344446668899999999999999 777764 46899999
Q ss_pred cEEeccC--CCccCcc-ccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCC-CCCCCCCCCccCce
Q 045633 438 RYLQLSS--VEELPET-CCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPN-GFERLTGLRTLSGF 508 (794)
Q Consensus 438 ~~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~ 508 (794)
++|+|++ +..+|.. +..+.+|++|+ .+.+..+|..+..+++|++|+++.|.+..+|. .+..+++|+.|++.
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 9999998 8888765 68999999999 77899999999999999999999999999884 47888888888743
No 116
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.17 E-value=4.6e-10 Score=119.95 Aligned_cols=288 Identities=11% Similarity=0.083 Sum_probs=160.3
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccC---CeEEEEEecCCCCHHHHHHHHHHHhcC
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF---DKRIWVCVSDPFDEFRIAKAIIEGLEG 78 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f---~~~~~v~~~~~~~~~~~~~~i~~~l~~ 78 (794)
+.+++.+++.... .....+.|.|+|++|+||||||+.+++ .....+ ..++|+++....+...+...++.+++.
T Consensus 28 e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~ 103 (386)
T 2qby_A 28 QIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDV 103 (386)
T ss_dssp HHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444555444211 123456899999999999999999987 443332 256788877666777778888777754
Q ss_pred CCCC-CCCHHHHHHHHHhHcC--CceEEEEEeCCCCCC----ccChhhhHhhccC-CCCCcEEEEEccchhhhhccc---
Q 045633 79 SLPN-LGELNSLLEYIHTSIK--GKKFFLILDDVWTDD----HSKWEPFHNCLMN-GLCGSRILVTTRKETVARMME--- 147 (794)
Q Consensus 79 ~~~~-~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~--- 147 (794)
.... .....+....+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+.......+.
T Consensus 104 ~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~ 183 (386)
T 2qby_A 104 KVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRV 183 (386)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHH
Confidence 3322 1234455555555553 458999999995421 2233344443322 223556788887654322211
Q ss_pred --c--cceEEccCCChHhHHHHHHHHhhCCC-CCCChhHHHHHHHHHHhhcC---CCchH-HHHHHhhhc-----C--CC
Q 045633 148 --S--TDVISIKELSEHECWSLFKRFAFSGR-SPTDCEQLEEIGRKIVGKCK---GLPLA-AKTIGSLLR-----F--KK 211 (794)
Q Consensus 148 --~--~~~~~l~~l~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~~~~i~~~~~---g~Pla-l~~~~~~l~-----~--~~ 211 (794)
. ...+.+++++.++..+++...+.... ..... .+....+++.++ |.|.. +.++..... . .-
T Consensus 184 ~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i 260 (386)
T 2qby_A 184 KSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKV 260 (386)
T ss_dssp HHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred hccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 1 24799999999999999987653211 11111 334555666666 98874 343322211 1 12
Q ss_pred CHHHHHHHHhhhhcccchhcccchhHHHhhhcCCChHHHhhhhhcccCCC-C-cccChhHHHHHH--HHcCCccccCCcc
Q 045633 212 TREEWQLILNSEMWQLEDFEKNLLAPLQLSYNDLPPEIKRCFLYCVVFPK-D-YDLDKGELVRLW--MAQGYIEKKGNIE 287 (794)
Q Consensus 212 ~~~~w~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~la~fp~-~-~~i~~~~li~~w--~~~g~~~~~~~~~ 287 (794)
+.+.+..++... ....+.-.+..++...+..+..++...+ + -.+....+.+.. +++.+- .. ..
T Consensus 261 ~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g--~~-~~ 327 (386)
T 2qby_A 261 KEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG--VE-AV 327 (386)
T ss_dssp CHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT--CC-CC
T ss_pred CHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC--CC-CC
Confidence 455555554432 1234566778888888887777764322 2 112233332211 111110 00 11
Q ss_pred hhhhhhHHHHHHHhccCccccc
Q 045633 288 MEMTGGWYFDFLASRSFFQDFD 309 (794)
Q Consensus 288 ~~~~~~~~l~~L~~~sll~~~~ 309 (794)
.......+++.|.+.+++....
T Consensus 328 ~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 328 TQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp CHHHHHHHHHHHHHHTSEEEEE
T ss_pred CHHHHHHHHHHHHhCCCEEEEe
Confidence 1234556789999999997643
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=4e-10 Score=117.25 Aligned_cols=286 Identities=12% Similarity=0.097 Sum_probs=158.1
Q ss_pred CCCccEEEEcccCcchhhhhhhhHHHhcc-CCccceEEEcccCCCccccccCccccCccCCcEEeccCCCccCc-cccC-
Q 045633 378 AKKLRSLILFDVTEDQSAASRGLQGLFDQ-LTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSSVEELPE-TCCE- 454 (794)
Q Consensus 378 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~~~~lp~-~i~~- 454 (794)
..+++.|.+.+.- ....+.. +.. +++|++|+|++|. +......-+.++.++++.+.. ..+|. .|.+
T Consensus 24 ~~~l~~L~l~g~i-----~~~~~~~-l~~~l~~L~~LdLs~n~----i~~~~~~~~~~~~~~~~~~~~-~~I~~~aF~~~ 92 (329)
T 3sb4_A 24 ANSITHLTLTGKL-----NAEDFRH-LRDEFPSLKVLDISNAE----IKMYSGKAGTYPNGKFYIYMA-NFVPAYAFSNV 92 (329)
T ss_dssp HHHCSEEEEEEEE-----CHHHHHH-HHHSCTTCCEEEEEEEE----ECCEEESSSSSGGGCCEEECT-TEECTTTTEEE
T ss_pred hCceeEEEEeccc-----cHHHHHH-HHHhhccCeEEecCcce----eEEecCccccccccccccccc-cccCHHHhccc
Confidence 5678888887751 1111222 333 8899999999998 541111112233344444443 24443 3556
Q ss_pred -------CCccceec-CcCCCccCcc-cccccCCceeEecccccccCCC-CCCCCCCCCccCceEeccccCCCCCCccCc
Q 045633 455 -------LLNLQTLD-CLSLKRLPQG-IGKLINLRHLIFDVFGVDYVPN-GFERLTGLRTLSGFTVARVDGEYSSKACNL 524 (794)
Q Consensus 455 -------L~~L~~L~-~~~l~~lp~~-~~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l 524 (794)
+.+|+.++ ..+++.++.. |.++++|+.|++..|.+..++. .+..+.++..+....... .
T Consensus 93 ~~~~~~g~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~-----------~ 161 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA-----------Y 161 (329)
T ss_dssp ETTEEEECTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH-----------H
T ss_pred ccccccccCCCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh-----------h
Confidence 88888888 4477777764 8889999999998888877764 355544444443110000 0
Q ss_pred ccccccccCCCeeEEccccCCCChhhhhhccccCCCCCc-eEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCC
Q 045633 525 EGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLV-HLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPP 603 (794)
Q Consensus 525 ~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~ 603 (794)
. .+..+. ...+..+..|+ .+.+...... .......-..+.
T Consensus 162 ~---~~~~i~------------------~~~f~~~~~L~~~i~~~~~~~l------------------~~~~~~~~~~~~ 202 (329)
T 3sb4_A 162 R---FKNRWE------------------HFAFIEGEPLETTIQVGAMGKL------------------EDEIMKAGLQPR 202 (329)
T ss_dssp H---TSTTTT------------------TSCEEESCCCEEEEEECTTCCH------------------HHHHHHTTCCGG
T ss_pred h---cccccc------------------ccccccccccceeEEecCCCcH------------------HHHHhhcccCcc
Confidence 0 000000 01122233333 2222211100 111122222345
Q ss_pred CccEEEEeecCCCccCCCCchh-ccccCccEEeecCCCCCCcCCC--CCCCCCcceeeecccccceEeCcccccCcccCC
Q 045633 604 NIESLNITGFEGRRLIFSSNWT-ASLDKLKRLDLAFCPRCEIMPP--LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDH 680 (794)
Q Consensus 604 ~L~~L~l~~~~~~~~~~~p~~~-~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~ 680 (794)
++..+.+.+...... ...+ ..+++|+.|+|.+| .++.++. +..+++|+.|++.+. ++.++...
T Consensus 203 ~~~~l~~~~~l~~~~---~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~a-------- 268 (329)
T 3sb4_A 203 DINFLTIEGKLDNAD---FKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRV-------- 268 (329)
T ss_dssp GCSEEEEEECCCHHH---HHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTT--------
T ss_pred ccceEEEeeeecHHH---HHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHH--------
Confidence 566666665432211 1111 13677888888776 3555654 777888888888752 66666543
Q ss_pred CccccccCCCccccCCccc-eeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCc-CccCCCCccEEEe
Q 045633 681 NHIHGTFSSSSVVAFPKLE-KLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPD-QLLRSTTLESLEI 754 (794)
Q Consensus 681 ~~l~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~-~~~~l~~L~~L~l 754 (794)
+.++++|+ .+.+.+ +++.+. +.+|..+++|+.|++.++ .++.|+. .+.++++|+.++.
T Consensus 269 -----------F~~~~~L~~~l~l~~--~l~~I~--~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 269 -----------FSNCGRLAGTLELPA--SVTAIE--FGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -----------TTTCTTCCEEEEECT--TCCEEC--TTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred -----------hhCChhccEEEEEcc--cceEEc--hhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 44677787 777765 455443 455668888999988777 6777766 4566778877753
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.15 E-value=6.5e-11 Score=115.12 Aligned_cols=139 Identities=21% Similarity=0.235 Sum_probs=110.4
Q ss_pred eEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccCccCC
Q 045633 359 RHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLIHL 437 (794)
Q Consensus 359 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L 437 (794)
+.+.+..+....+|..+. ++++.|+++++. +....+..|..+++|++|+|++|. +..+ |..|..+++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-----i~~i~~~~~~~l~~L~~L~Ls~N~----i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-----IKVIPPGAFSPYKKLRRIDLSNNQ----ISELAPDAFQGLRSL 82 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-----CCEECTTSSTTCTTCCEEECCSSC----CCEECTTTTTTCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-----CCCcCHhHhhCCCCCCEEECCCCc----CCCcCHHHhhCCcCC
Confidence 345555555666666554 789999999883 333445568889999999999999 5555 7789999999
Q ss_pred cEEeccC--CCccCcc-ccCCCccceec--CcCCCcc-CcccccccCCceeEecccccccCCCC-CCCCCCCCccCce
Q 045633 438 RYLQLSS--VEELPET-CCELLNLQTLD--CLSLKRL-PQGIGKLINLRHLIFDVFGVDYVPNG-FERLTGLRTLSGF 508 (794)
Q Consensus 438 ~~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~~ 508 (794)
++|+|++ +..+|.. +.++.+|++|+ .+.+..+ |..+..+++|++|+++.|.+..+|.. +..+++|+.|++.
T Consensus 83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 9999998 8889876 68899999999 6678777 45688999999999999999988754 7888888888743
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=5.6e-11 Score=136.75 Aligned_cols=149 Identities=20% Similarity=0.190 Sum_probs=91.6
Q ss_pred CcceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCcc
Q 045633 356 EKLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLI 435 (794)
Q Consensus 356 ~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~ 435 (794)
..++++++..+.....+..+....+|+.+.+.......... ..++..|..+..|++|+|++|. +..+|..+.++.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~-~~~~~~~~~l~~L~~L~Ls~n~----l~~l~~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM-VMPKDSKYDDQLWHALDLSNLQ----IFNISANIFKYD 247 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSC----CSCCCGGGGGCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce-ecChhhhccCCCCcEEECCCCC----CCCCChhhcCCC
Confidence 45777777776666555555555555555554432111122 2456778899999999999999 778998888999
Q ss_pred CCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCceE
Q 045633 436 HLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFT 509 (794)
Q Consensus 436 ~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~ 509 (794)
+|++|+|++ +..+|..|++|.+|++|+ .+.+..+|..+++|++|++|+++.|.+..+|..++.|++|+.|++..
T Consensus 248 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 999999998 889999999999999999 67788999999999999999999999999999999999999998643
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.11 E-value=1.1e-11 Score=131.13 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=127.8
Q ss_pred cCCCCccEEEEcccCcchhhhhhhhHHHhccCC-ccceEEEcccCCCcccccc-CccccCc-----cCCcEEeccC--CC
Q 045633 376 FDAKKLRSLILFDVTEDQSAASRGLQGLFDQLT-CLRALKIEDFGLGDKTIEI-PRGLENL-----IHLRYLQLSS--VE 446 (794)
Q Consensus 376 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~l-p~~i~~l-----~~L~~L~L~~--~~ 446 (794)
...++|++|+++++....... ..+...+..++ +|++|++++|. +... +..+..+ ++|++|+|++ +.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~----l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSIST-VELIQAFANTPASVTSLNLSGNS----LGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCH-HHHHHHHHTCCTTCCEEECCSSC----GGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred hCCCCceEEEccCCCCChHHH-HHHHHHHHhCCCceeEEECcCCC----CCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 334558888887773221111 11224566777 78888888887 4333 3445544 7788888877 44
Q ss_pred ccCc-c----ccCC-Cccceec--CcCCCccCcc-----ccc-ccCCceeEeccccccc-----CCCCCCCCC-CCCccC
Q 045633 447 ELPE-T----CCEL-LNLQTLD--CLSLKRLPQG-----IGK-LINLRHLIFDVFGVDY-----VPNGFERLT-GLRTLS 506 (794)
Q Consensus 447 ~lp~-~----i~~L-~~L~~L~--~~~l~~lp~~-----~~~-L~~L~~L~l~~~~l~~-----lp~~i~~l~-~L~~L~ 506 (794)
..+. . +..+ .+|++|+ .+.+...+.. +.. .++|++|++++|.+.. ++..+..+. +|++|+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 3332 2 3344 6777777 4445544331 223 2477777777776652 222333333 555554
Q ss_pred ceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCC-CCCceEEEEecCCCCccccccccccC
Q 045633 507 GFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKK-KNLVHLILDFTKREDEDYEEAPMWMN 585 (794)
Q Consensus 507 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~p~~~~ 585 (794)
+ ....-.......+...+..+ ++|+.|++++|......
T Consensus 174 L--------------------------------s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~--------- 212 (362)
T 3goz_A 174 L--------------------------------RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS--------- 212 (362)
T ss_dssp C--------------------------------TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC---------
T ss_pred e--------------------------------cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH---------
Confidence 2 21100000111122234444 48888888888644100
Q ss_pred cchhHHHHHHhhhCCC-CCCccEEEEeecCCCccCC--CCchhccccCccEEeecCCCC--C-----CcCC-CCCCCCCc
Q 045633 586 EENEAKQEAICEALQA-PPNIESLNITGFEGRRLIF--SSNWTASLDKLKRLDLAFCPR--C-----EIMP-PLGKLPSL 654 (794)
Q Consensus 586 ~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~--~p~~~~~l~~L~~L~L~~~~~--l-----~~l~-~l~~L~~L 654 (794)
...+...+.. .++|+.|++++|....... ....+..+++|+.|+|++|.. + ..++ .+..+++|
T Consensus 213 ------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L 286 (362)
T 3goz_A 213 ------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286 (362)
T ss_dssp ------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred ------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence 1223334444 3588889998887654310 012335678899999988841 1 1122 36678889
Q ss_pred ceeeecccc
Q 045633 655 EILRIAEMV 663 (794)
Q Consensus 655 ~~L~l~~~~ 663 (794)
+.|+++++.
T Consensus 287 ~~LdL~~N~ 295 (362)
T 3goz_A 287 ILVDKNGKE 295 (362)
T ss_dssp EEECTTSCB
T ss_pred EEEecCCCc
Confidence 999998754
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=1.4e-10 Score=112.75 Aligned_cols=140 Identities=21% Similarity=0.207 Sum_probs=111.4
Q ss_pred ceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhh-hHHHhccCCccceEEEcccCCCccccccCc-cccCcc
Q 045633 358 LRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRG-LQGLFDQLTCLRALKIEDFGLGDKTIEIPR-GLENLI 435 (794)
Q Consensus 358 ~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~-~i~~l~ 435 (794)
.+.+.+..+....+|..+ .+.++.|+++++. +... ....|..+++|++|++++|. +..++. .|..+.
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~-----l~~~~~~~~~~~l~~L~~L~L~~N~----i~~i~~~~~~~l~ 81 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNE-----FTVLEATGIFKKLPQLRKINFSNNK----ITDIEEGAFEGAS 81 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSC-----CCEECCCCCGGGCTTCCEEECCSSC----CCEECTTTTTTCT
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCc-----CCccCchhhhccCCCCCEEECCCCc----CCEECHHHhCCCC
Confidence 456777777777777655 3567899999883 2222 22457889999999999999 666654 799999
Q ss_pred CCcEEeccC--CCccCcc-ccCCCccceec--CcCCCcc-CcccccccCCceeEecccccccC-CCCCCCCCCCCccCce
Q 045633 436 HLRYLQLSS--VEELPET-CCELLNLQTLD--CLSLKRL-PQGIGKLINLRHLIFDVFGVDYV-PNGFERLTGLRTLSGF 508 (794)
Q Consensus 436 ~L~~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~l-p~~~~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~~~ 508 (794)
+|++|+|++ +..+|.. +.++.+|++|+ .+.+..+ |..+..+++|++|+++.|.+..+ |..+..+++|+.|++.
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 999999998 8887764 89999999999 6678777 56789999999999999999988 6778889999988743
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=9.5e-11 Score=108.75 Aligned_cols=101 Identities=27% Similarity=0.316 Sum_probs=54.0
Q ss_pred hccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCc-cCccccCCCccceec--CcCCCccC--cccccc
Q 045633 404 FDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEE-LPETCCELLNLQTLD--CLSLKRLP--QGIGKL 476 (794)
Q Consensus 404 ~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~-lp~~i~~L~~L~~L~--~~~l~~lp--~~~~~L 476 (794)
+..+++|++|++++|. +..+ ..++.+++|++|++++ +.. +|..+.++.+|++|+ .+.+..+| ..+..+
T Consensus 45 ~~~l~~L~~L~l~~n~----l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l 119 (168)
T 2ell_A 45 TAEFVNLEFLSLINVG----LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL 119 (168)
T ss_dssp CGGGGGCCEEEEESSC----CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSC
T ss_pred HHhCCCCCEEeCcCCC----CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcC
Confidence 4455555555555555 3333 4455555555555555 443 444444455555555 34455544 345556
Q ss_pred cCCceeEecccccccCCC----CCCCCCCCCccCceE
Q 045633 477 INLRHLIFDVFGVDYVPN----GFERLTGLRTLSGFT 509 (794)
Q Consensus 477 ~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~~~~ 509 (794)
++|++|++++|.+..+|. .+..+++|+.|++..
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 120 ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 666666666666655554 455566666665443
No 123
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.09 E-value=1.1e-09 Score=108.89 Aligned_cols=105 Identities=10% Similarity=0.100 Sum_probs=74.1
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhh-h-cccccceEEccCCChHhHHHHHHHHhhCCCC
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVA-R-MMESTDVISIKELSEHECWSLFKRFAFSGRS 175 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~ 175 (794)
.+++.+||+||++..+...+..+...+.....+.++|+||+..... . .......+.+++++.++..+++...+...+.
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 3568999999996655556667777666655678888888764321 1 1122468999999999999999887754332
Q ss_pred CCChhHHHHHHHHHHhhcCCCchHHHHHHhh
Q 045633 176 PTDCEQLEEIGRKIVGKCKGLPLAAKTIGSL 206 (794)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 206 (794)
... .+....|++.++|.|..+..+...
T Consensus 204 ~~~----~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 204 AHE----PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp CBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 221 345677899999999988766543
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.08 E-value=1.1e-10 Score=108.46 Aligned_cols=131 Identities=21% Similarity=0.135 Sum_probs=102.2
Q ss_pred ccCcceEEEEEecccc--cCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccc-cCcc
Q 045633 354 CQEKLRHLTLMLGLRA--KFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIE-IPRG 430 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-lp~~ 430 (794)
....++.|.+..+... .+|..+..+++|+.|+++++... . + ..+..+++|++|++++|. +.. +|..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-----~-~-~~~~~l~~L~~L~Ls~N~----l~~~~~~~ 90 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----S-V-SNLPKLPKLKKLELSENR----IFGGLDML 90 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-----C-C-SSCCCCSSCCEEEEESCC----CCSCCCHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-----C-h-hhhccCCCCCEEECcCCc----CchHHHHH
Confidence 4567888888888876 67777778888999999888422 2 2 447788889999999888 444 6776
Q ss_pred ccCccCCcEEeccC--CCccC--ccccCCCccceec--CcCCCccCc----ccccccCCceeEecccccccCCCC
Q 045633 431 LENLIHLRYLQLSS--VEELP--ETCCELLNLQTLD--CLSLKRLPQ----GIGKLINLRHLIFDVFGVDYVPNG 495 (794)
Q Consensus 431 i~~l~~L~~L~L~~--~~~lp--~~i~~L~~L~~L~--~~~l~~lp~----~~~~L~~L~~L~l~~~~l~~lp~~ 495 (794)
+..+++|++|++++ +..+| ..+.++.+|++|+ .+.+..+|. .+..+++|++|+++.+.+.++|..
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 77788999999988 77776 6788888899888 556777776 688888999998888888887754
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.06 E-value=6.8e-10 Score=107.87 Aligned_cols=131 Identities=15% Similarity=0.235 Sum_probs=103.9
Q ss_pred CCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCC-CCCCCCCcceeeecccccceEeCcccccCcccCCC
Q 045633 603 PNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMP-PLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHN 681 (794)
Q Consensus 603 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~-~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~ 681 (794)
++|+.|+++++....+. +..+..+++|+.|+|++|......| .+..+++|++|+|+++ .++.++...
T Consensus 32 ~~l~~L~l~~n~i~~i~--~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~--------- 99 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSL--------- 99 (220)
T ss_dssp TTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTT---------
T ss_pred cCCCEEECCCCcCCCcC--HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhH---------
Confidence 68999999999887772 4478889999999999995443334 3889999999999974 466665543
Q ss_pred ccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCc-CccCCCCccEEEeccCcc
Q 045633 682 HIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPD-QLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 682 ~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~-~~~~l~~L~~L~l~~~~~ 759 (794)
+.++++|+.|+++++ ++..+. +..+..+++|+.|++++| .++.+|. .+..+++|++|++++||.
T Consensus 100 ----------f~~l~~L~~L~L~~N-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 100 ----------FEGLFSLQLLLLNAN-KINCLR--VDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp ----------TTTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ----------ccCCCCCCEEECCCC-CCCEeC--HHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 457899999999984 565553 345668999999999999 6777775 477899999999999986
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.04 E-value=8.1e-11 Score=106.77 Aligned_cols=120 Identities=28% Similarity=0.337 Sum_probs=85.7
Q ss_pred CCCccEEEEcccCcchhhhh-hhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCc-cCcccc
Q 045633 378 AKKLRSLILFDVTEDQSAAS-RGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEE-LPETCC 453 (794)
Q Consensus 378 ~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~-lp~~i~ 453 (794)
.++++.|+++++. +. ..++..+..+++|++|++++|. +..+ ..++.+++|++|++++ +.. +|..++
T Consensus 16 ~~~l~~L~l~~n~-----l~~~~~~~~~~~l~~L~~L~l~~n~----l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSR-----SNEGKLEGLTDEFEELEFLSTINVG----LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp GGGCSEEECTTCB-----CBTTBCCSCCTTCTTCCEEECTTSC----CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred CccCeEEEccCCc-----CChhHHHHHHhhcCCCcEEECcCCC----CCCc-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 4667777777762 22 2344456777788888888887 4455 5577788888888877 655 666677
Q ss_pred CCCccceec--CcCCCccC--cccccccCCceeEecccccccCCC----CCCCCCCCCccCc
Q 045633 454 ELLNLQTLD--CLSLKRLP--QGIGKLINLRHLIFDVFGVDYVPN----GFERLTGLRTLSG 507 (794)
Q Consensus 454 ~L~~L~~L~--~~~l~~lp--~~~~~L~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~~ 507 (794)
++.+|++|+ .+.+..+| ..++.+++|++|++++|.+..+|. .++.+++|+.|++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 778888887 55676654 668888888888888888887775 5777888887764
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.03 E-value=5.6e-10 Score=107.64 Aligned_cols=137 Identities=30% Similarity=0.424 Sum_probs=100.5
Q ss_pred EEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCcc-ccCccCCc
Q 045633 360 HLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRG-LENLIHLR 438 (794)
Q Consensus 360 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~-i~~l~~L~ 438 (794)
.+.........+|..+ .++++.|+++++. +....+..|..+++|++|++++|. +..+|.. +..+++|+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~ 79 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNS-----LKSLPNGVFDELTSLTQLYLGGNK----LQSLPNGVFNKLTSLT 79 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSC----CCCCCTTTTTTCTTCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCc-----cCcCChhhhcccccCcEEECCCCc----cCccChhhcCCCCCcC
Confidence 3444444444455443 4688889888873 333345557888899999999988 6666554 67889999
Q ss_pred EEeccC--CCccCcc-ccCCCccceec--CcCCCccCcc-cccccCCceeEecccccccCCCC-CCCCCCCCccCc
Q 045633 439 YLQLSS--VEELPET-CCELLNLQTLD--CLSLKRLPQG-IGKLINLRHLIFDVFGVDYVPNG-FERLTGLRTLSG 507 (794)
Q Consensus 439 ~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~~ 507 (794)
+|++++ +..+|.. +.++.+|++|+ .+.+..+|.. +..+++|++|+++.|.+..+|.. +..+++|+.|++
T Consensus 80 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence 999987 7777765 68888899888 5667777765 68888999999988888887754 677778877763
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.03 E-value=2e-10 Score=107.41 Aligned_cols=126 Identities=21% Similarity=0.126 Sum_probs=100.6
Q ss_pred cccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCcc
Q 045633 374 SIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPET 451 (794)
Q Consensus 374 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~ 451 (794)
.+.++++|+.|++.++... .++.+....++|++|++++|. +..+ ..++.+++|++|++++ +..+|..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~------~i~~~~~~~~~L~~L~Ls~N~----l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP------VIENLGATLDQFDAIDFSDNE----IRKL-DGFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp EEECTTSCEEEECTTSCCC------SCCCGGGGTTCCSEEECCSSC----CCEE-CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred hcCCcCCceEEEeeCCCCc------hhHHhhhcCCCCCEEECCCCC----CCcc-cccccCCCCCEEECCCCcccccCcc
Confidence 4557788999999888422 223333334489999999998 5566 5688999999999998 8888876
Q ss_pred c-cCCCccceec--CcCCCccCc--ccccccCCceeEecccccccCCCC----CCCCCCCCccCceEe
Q 045633 452 C-CELLNLQTLD--CLSLKRLPQ--GIGKLINLRHLIFDVFGVDYVPNG----FERLTGLRTLSGFTV 510 (794)
Q Consensus 452 i-~~L~~L~~L~--~~~l~~lp~--~~~~L~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~~~~~ 510 (794)
+ +.+.+|++|+ .+.+..+|. .+..+++|++|++++|.+..+|.. +..+++|+.|++..+
T Consensus 83 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 5 8899999998 667888887 788999999999999999988875 888999999986554
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.02 E-value=6e-10 Score=109.06 Aligned_cols=131 Identities=24% Similarity=0.265 Sum_probs=110.6
Q ss_pred ccccCcceEEEEEecccccC-cccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCcc
Q 045633 352 STCQEKLRHLTLMLGLRAKF-PVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRG 430 (794)
Q Consensus 352 ~~~~~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~ 430 (794)
......++.|.+..+.+... +..+..+++|+.|+++++. +....+..|..+++|++|+|++|. +..+|..
T Consensus 36 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-----l~~i~~~~~~~l~~L~~L~Ls~N~----l~~l~~~ 106 (229)
T 3e6j_A 36 AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-----LGALPVGVFDSLTQLTVLDLGTNQ----LTVLPSA 106 (229)
T ss_dssp SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSC----CCCCCTT
T ss_pred CCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-----CCCcChhhcccCCCcCEEECCCCc----CCccChh
Confidence 44568899999999988876 4567889999999999983 334445668899999999999999 6677654
Q ss_pred -ccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCc-ccccccCCceeEeccccccc
Q 045633 431 -LENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQ-GIGKLINLRHLIFDVFGVDY 491 (794)
Q Consensus 431 -i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~-~~~~L~~L~~L~l~~~~l~~ 491 (794)
+..+++|++|+|++ +..+|..+.++.+|++|+ .+.+..+|. .+..+++|++|++++|.+..
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 68999999999998 999999999999999999 677888875 48899999999998887654
No 130
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.02 E-value=2.9e-09 Score=104.04 Aligned_cols=174 Identities=13% Similarity=0.009 Sum_probs=104.4
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCcccccc-CC-eEEEEEecCCCCHHHHHHHHHHHhcCCC
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN-FD-KRIWVCVSDPFDEFRIAKAIIEGLEGSL 80 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-f~-~~~~v~~~~~~~~~~~~~~i~~~l~~~~ 80 (794)
.+++.+++... ..+.+.|+|++|+|||++|+.+++ ..... +. ..+.++.+.......+...+........
T Consensus 26 ~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
T 2chg_A 26 IQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP 97 (226)
T ss_dssp HHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHHHHHHHhcccC
Confidence 44555665543 223388999999999999999987 33222 22 2334444443333322222211111100
Q ss_pred CCCCCHHHHHHHHHhHcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhh-h-cccccceEEccCCC
Q 045633 81 PNLGELNSLLEYIHTSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVA-R-MMESTDVISIKELS 158 (794)
Q Consensus 81 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~-~-~~~~~~~~~l~~l~ 158 (794)
.-.+++.+||+||++.......+.+...+.....+.++|+||+..... . .......+.+.+++
T Consensus 98 ---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~ 162 (226)
T 2chg_A 98 ---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVP 162 (226)
T ss_dssp ---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCC
T ss_pred ---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCC
Confidence 013578999999996654445556666665555677889888765321 1 11223488999999
Q ss_pred hHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHH
Q 045633 159 EHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTI 203 (794)
Q Consensus 159 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 203 (794)
.++..+++.+.+...+.... .+....+++.++|.|..+..+
T Consensus 163 ~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 163 KEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp HHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 99999999887653332221 345667888999999865433
No 131
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.02 E-value=8.7e-10 Score=110.36 Aligned_cols=139 Identities=18% Similarity=0.113 Sum_probs=97.6
Q ss_pred cCcceEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCc
Q 045633 355 QEKLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENL 434 (794)
Q Consensus 355 ~~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l 434 (794)
...++.|.+.++....++ .+..+++|+.|+++++. +.. ++. +..+++|++|++++|. +..+|....
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-----i~~-~~~-l~~l~~L~~L~L~~N~----l~~l~~~~~-- 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-----ISD-LSP-LKDLTKLEELSVNRNR----LKNLNGIPS-- 105 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-----CCC-CGG-GTTCSSCCEEECCSSC----CSCCTTCCC--
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-----cCC-Chh-hccCCCCCEEECCCCc----cCCcCcccc--
Confidence 456777777777666655 56677888888887773 222 222 6778888888888887 556655333
Q ss_pred cCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCCCCCCCCCCCccCceEe
Q 045633 435 IHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLSGFTV 510 (794)
Q Consensus 435 ~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~~~~~ 510 (794)
.+|++|++++ +..+| .++++.+|+.|+ .+.++.+| .++.+++|++|++++|.+..+ ..+..+++|+.|++...
T Consensus 106 ~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEE
T ss_pred CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCC
Confidence 7888888887 66665 577888888887 55677775 577788888888888877777 56777777777775443
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.99 E-value=7.9e-10 Score=107.40 Aligned_cols=130 Identities=13% Similarity=0.116 Sum_probs=107.4
Q ss_pred ccccCcceEEEEEecccccCcc--cccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCc
Q 045633 352 STCQEKLRHLTLMLGLRAKFPV--SIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPR 429 (794)
Q Consensus 352 ~~~~~~~r~l~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~ 429 (794)
......++.|.+..+.+...++ .+..+++|+.|+++++. +....+..|.++++|++|+|++|. +..+|.
T Consensus 28 ~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-----i~~i~~~~~~~l~~L~~L~Ls~N~----l~~~~~ 98 (220)
T 2v70_A 28 EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-----ITDIEEGAFEGASGVNEILLTSNR----LENVQH 98 (220)
T ss_dssp SCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSC----CCCCCG
T ss_pred cCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-----CCEECHHHhCCCCCCCEEECCCCc----cCccCH
Confidence 3445677899999998877643 36789999999999983 334445578999999999999999 666654
Q ss_pred -cccCccCCcEEeccC--CCcc-CccccCCCccceec--CcCCCcc-CcccccccCCceeEecccccc
Q 045633 430 -GLENLIHLRYLQLSS--VEEL-PETCCELLNLQTLD--CLSLKRL-PQGIGKLINLRHLIFDVFGVD 490 (794)
Q Consensus 430 -~i~~l~~L~~L~L~~--~~~l-p~~i~~L~~L~~L~--~~~l~~l-p~~~~~L~~L~~L~l~~~~l~ 490 (794)
.++.+++|++|+|++ +..+ |..+.++.+|++|+ .+.++.+ |..+..+++|++|++++|.+.
T Consensus 99 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 589999999999998 7777 56799999999999 6678887 677999999999999888775
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.96 E-value=5.6e-10 Score=104.31 Aligned_cols=138 Identities=16% Similarity=0.232 Sum_probs=107.9
Q ss_pred hCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccceEeCcccccCcc
Q 045633 598 ALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSVKKVGDEFLGIGI 677 (794)
Q Consensus 598 ~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~ 677 (794)
.+..+++|+.|++++|....+ |......++|+.|++++| .+..++.++.+++|+.|+++++ .++.++..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~----- 83 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIGEGL----- 83 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEECSCH-----
T ss_pred hcCCcCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCC-cccccCcch-----
Confidence 455678999999999988765 665445559999999999 4566678999999999999985 466666432
Q ss_pred cCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcC----ccCCCCccEEE
Q 045633 678 RDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQ----LLRSTTLESLE 753 (794)
Q Consensus 678 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~----~~~l~~L~~L~ 753 (794)
+..+++|+.|+++++ .+..++.. ..+..+++|+.|++++| .+..+|.. +..+++|+.|+
T Consensus 84 --------------~~~l~~L~~L~L~~N-~i~~~~~~-~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 84 --------------DQALPDLTELILTNN-SLVELGDL-DPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp --------------HHHCTTCCEEECCSC-CCCCGGGG-GGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEET
T ss_pred --------------hhcCCCCCEEECCCC-cCCcchhh-HhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeC
Confidence 357899999999984 55555421 13568999999999999 57788875 77899999999
Q ss_pred eccCccccc
Q 045633 754 IGEAPIVEQ 762 (794)
Q Consensus 754 l~~~~~l~~ 762 (794)
+++|+.-++
T Consensus 147 ~~~n~~~~~ 155 (176)
T 1a9n_A 147 FQKVKLKER 155 (176)
T ss_dssp TEECCHHHH
T ss_pred CCcCCHHHH
Confidence 999976443
No 134
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.93 E-value=3.1e-09 Score=102.38 Aligned_cols=141 Identities=24% Similarity=0.327 Sum_probs=113.1
Q ss_pred ccccCcceEEEEEecccccCccc-ccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCcc
Q 045633 352 STCQEKLRHLTLMLGLRAKFPVS-IFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRG 430 (794)
Q Consensus 352 ~~~~~~~r~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~ 430 (794)
......++.|.+..+....++.. +..+++|++|++.++. +....+..|..+++|++|++++|. +..+|..
T Consensus 24 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~ 94 (208)
T 2o6s_A 24 TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-----LQSLPNGVFNKLTSLTYLNLSTNQ----LQSLPNG 94 (208)
T ss_dssp SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSC----CCCCCTT
T ss_pred CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-----cCccChhhcCCCCCcCEEECCCCc----CCccCHh
Confidence 33466899999999988876664 5789999999999883 334445567899999999999999 6677654
Q ss_pred -ccCccCCcEEeccC--CCccCcc-ccCCCccceec--CcCCCccCcc-cccccCCceeEecccccccCCCCCCCCCCCC
Q 045633 431 -LENLIHLRYLQLSS--VEELPET-CCELLNLQTLD--CLSLKRLPQG-IGKLINLRHLIFDVFGVDYVPNGFERLTGLR 503 (794)
Q Consensus 431 -i~~l~~L~~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 503 (794)
+..+++|++|++++ +..+|.. +.++.+|++|+ .+.+..+|.. +..+++|++|+++.|.+. +.+++|+
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~ 168 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIR 168 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTH
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHH
Confidence 78999999999998 8888875 78999999999 6678888775 788999999999888554 3455666
Q ss_pred ccCc
Q 045633 504 TLSG 507 (794)
Q Consensus 504 ~L~~ 507 (794)
.|..
T Consensus 169 ~L~~ 172 (208)
T 2o6s_A 169 YLSE 172 (208)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.92 E-value=1.4e-09 Score=121.08 Aligned_cols=95 Identities=21% Similarity=0.221 Sum_probs=85.6
Q ss_pred ccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEe
Q 045633 409 CLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIF 484 (794)
Q Consensus 409 ~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l 484 (794)
.|++|++++|. +..+|. ++.+++|++|+|++ +..+|..+++|.+|++|+ .+.++.+| .++.|++|++|++
T Consensus 442 ~L~~L~Ls~n~----l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKD----LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSC----CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCC----CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 58999999999 777887 99999999999998 889999999999999999 67788888 7999999999999
Q ss_pred cccccccC--CCCCCCCCCCCccCceE
Q 045633 485 DVFGVDYV--PNGFERLTGLRTLSGFT 509 (794)
Q Consensus 485 ~~~~l~~l--p~~i~~l~~L~~L~~~~ 509 (794)
++|.+..+ |..++.+++|+.|++..
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 99999988 88899999999998544
No 136
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.91 E-value=2.1e-09 Score=113.26 Aligned_cols=138 Identities=22% Similarity=0.171 Sum_probs=90.0
Q ss_pred eEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhc-cCCccceEEEcccCCCccccccC-ccccCccC
Q 045633 359 RHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFD-QLTCLRALKIEDFGLGDKTIEIP-RGLENLIH 436 (794)
Q Consensus 359 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~lp-~~i~~l~~ 436 (794)
+.+.+..+....+|..+. +.++.|+++++. +....+..|. ++++|++|+|++|. +..++ ..|..+++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-----l~~l~~~~~~~~l~~L~~L~L~~N~----i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN-----LSRLRAEWTPTRLTNLHSLLLSHNH----LNFISSEAFVPVPN 89 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSC-----CCEECTTSSSSCCTTCCEEECCSSC----CCEECTTTTTTCTT
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCC-----CCccChhhhhhcccccCEEECCCCc----CCccChhhccCCCC
Confidence 445555555555665443 457777777772 3333344455 77778888888777 55554 45777778
Q ss_pred CcEEeccC--CCccCc-cccCCCccceec--CcCCCcc-CcccccccCCceeEecccccccCCCCC----CCCCCCCccC
Q 045633 437 LRYLQLSS--VEELPE-TCCELLNLQTLD--CLSLKRL-PQGIGKLINLRHLIFDVFGVDYVPNGF----ERLTGLRTLS 506 (794)
Q Consensus 437 L~~L~L~~--~~~lp~-~i~~L~~L~~L~--~~~l~~l-p~~~~~L~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~ 506 (794)
|++|+|++ +..+|. .+.+|.+|++|+ .+.+..+ |..+..+++|++|+++.|.+..+|..+ ..+++|+.|+
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 88888877 666665 467777788777 4556665 445777788888888777777777553 4577777776
Q ss_pred c
Q 045633 507 G 507 (794)
Q Consensus 507 ~ 507 (794)
+
T Consensus 170 L 170 (361)
T 2xot_A 170 L 170 (361)
T ss_dssp C
T ss_pred C
Confidence 4
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.86 E-value=1.1e-09 Score=99.25 Aligned_cols=121 Identities=21% Similarity=0.165 Sum_probs=101.3
Q ss_pred ccCcceEEEEEecccc--cCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccc-cCcc
Q 045633 354 CQEKLRHLTLMLGLRA--KFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIE-IPRG 430 (794)
Q Consensus 354 ~~~~~r~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-lp~~ 430 (794)
....++.+.+..+... .++..+..+++|+.|+++++... . . ..+..+++|++|++++|. +.. +|..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----~-~-~~~~~l~~L~~L~Ls~n~----i~~~~~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----S-I-ANLPKLNKLKKLELSDNR----VSGGLEVL 83 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-----C-C-TTCCCCTTCCEEECCSSC----CCSCTHHH
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-----C-c-hhhhcCCCCCEEECCCCc----ccchHHHH
Confidence 4567899999998887 67877889999999999998432 2 2 458899999999999999 555 7777
Q ss_pred ccCccCCcEEeccC--CCccC--ccccCCCccceec--CcCCCccCc----ccccccCCceeEec
Q 045633 431 LENLIHLRYLQLSS--VEELP--ETCCELLNLQTLD--CLSLKRLPQ----GIGKLINLRHLIFD 485 (794)
Q Consensus 431 i~~l~~L~~L~L~~--~~~lp--~~i~~L~~L~~L~--~~~l~~lp~----~~~~L~~L~~L~l~ 485 (794)
++.+++|++|++++ +..+| ..++.+.+|++|+ .+.+..+|. .++.+++|++|+++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88899999999998 88876 7899999999999 567888876 68899999999874
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.85 E-value=3e-09 Score=112.12 Aligned_cols=132 Identities=18% Similarity=0.137 Sum_probs=85.3
Q ss_pred cccCcceEEEEEecccccCcccc-c-CCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCc-
Q 045633 353 TCQEKLRHLTLMLGLRAKFPVSI-F-DAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPR- 429 (794)
Q Consensus 353 ~~~~~~r~l~l~~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~- 429 (794)
.....++.|.+..+.+..++... . .+++|+.|+++++. +....+..|.++++|++|+|++|. +..+|.
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-----i~~i~~~~~~~l~~L~~L~Ls~N~----l~~~~~~ 106 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-----LNFISSEAFVPVPNLRYLDLSSNH----LHTLDEF 106 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSC----CCEECTT
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-----CCccChhhccCCCCCCEEECCCCc----CCcCCHH
Confidence 34555677777777666655443 3 67777777777762 333334456777777777777777 555543
Q ss_pred cccCccCCcEEeccC--CCcc-CccccCCCccceec--CcCCCccCccc----ccccCCceeEecccccccCC
Q 045633 430 GLENLIHLRYLQLSS--VEEL-PETCCELLNLQTLD--CLSLKRLPQGI----GKLINLRHLIFDVFGVDYVP 493 (794)
Q Consensus 430 ~i~~l~~L~~L~L~~--~~~l-p~~i~~L~~L~~L~--~~~l~~lp~~~----~~L~~L~~L~l~~~~l~~lp 493 (794)
.|..+.+|++|+|++ +..+ |..+.++.+|+.|+ .+.+..+|..+ ..+++|++|+++.|.+..+|
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 467777777777776 6555 44577777777777 55667776653 46777777777777777666
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.84 E-value=1.7e-09 Score=124.42 Aligned_cols=112 Identities=22% Similarity=0.243 Sum_probs=85.9
Q ss_pred CcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCcc
Q 045633 371 FPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEEL 448 (794)
Q Consensus 371 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~l 448 (794)
.+..+..++.|+.|+++++. +. .++..+..+++|++|+|++|. +..+|..|++|++|++|+|++ +..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~-----l~-~l~~~~~~l~~L~~L~Ls~N~----l~~lp~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQ-----IF-NISANIFKYDFLTRLYLNGNS----LTELPAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp ------CCCCCCEEECTTSC-----CS-CCCGGGGGCCSCSCCBCTTSC----CSCCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred ChhhhccCCCCcEEECCCCC-----CC-CCChhhcCCCCCCEEEeeCCc----CcccChhhhCCCCCCEEeCcCCcCCcc
Confidence 45566778888999988873 22 233334478889999999988 668888888999999999988 8888
Q ss_pred CccccCCCccceec--CcCCCccCcccccccCCceeEecccccccC
Q 045633 449 PETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYV 492 (794)
Q Consensus 449 p~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~l 492 (794)
|..+++|.+|++|+ .+.+..+|..|++|++|++|++++|.+...
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 88899999999988 567888888888999999999988887743
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.82 E-value=1.2e-08 Score=96.58 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=88.3
Q ss_pred cEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC-CCCCCCcceeeecccccceEeCcccccCcccCCCccc
Q 045633 606 ESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP-LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIH 684 (794)
Q Consensus 606 ~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~-l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~ 684 (794)
+.++++++....+ |..+ .++|+.|++++|. +..+|. +..+++|+.|+++++. ++.++...
T Consensus 13 ~~l~~~~~~l~~i---p~~~--~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~------------ 73 (193)
T 2wfh_A 13 TVVRCSNKGLKVL---PKGI--PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQS------------ 73 (193)
T ss_dssp TEEECTTSCCSSC---CSCC--CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTT------------
T ss_pred CEEEcCCCCCCcC---CCCC--CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCc-CCEeCHhH------------
Confidence 4566666666555 6543 3688888888884 455554 7778888888888643 44443321
Q ss_pred cccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcC-ccCCCCccEEEeccCccc
Q 045633 685 GTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQ-LLRSTTLESLEIGEAPIV 760 (794)
Q Consensus 685 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~-~~~l~~L~~L~l~~~~~l 760 (794)
+.++++|+.|++++ +++..+. +..+..+++|+.|++++| .++.+|.. +..+++|+.|++++||.-
T Consensus 74 -------f~~l~~L~~L~Ls~-N~l~~i~--~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 74 -------FSNMTQLLTLILSY-NRLRCIP--PRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp -------TTTCTTCCEEECCS-SCCCBCC--TTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred -------ccCCCCCCEEECCC-CccCEeC--HHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 45778888888887 3555554 334568899999999998 67788764 667899999999998863
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.81 E-value=5.4e-09 Score=99.06 Aligned_cols=120 Identities=23% Similarity=0.261 Sum_probs=55.4
Q ss_pred eEEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhH-HHhccCCccceEEEcccCCCcccccc-CccccCccC
Q 045633 359 RHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQ-GLFDQLTCLRALKIEDFGLGDKTIEI-PRGLENLIH 436 (794)
Q Consensus 359 r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~ 436 (794)
+.+.+..+....+|..+. .+++.|.++++. +....+ ..|..+++|++|+|++|. +..+ |..++.+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~-----i~~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNE-----LGRISSDGLFGRLPHLVKLELKRNQ----LTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCC-----CCSBCCSCSGGGCTTCCEEECCSSC----CCCBCTTTTTTCTT
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCc-----CCccCCccccccCCCCCEEECCCCC----CCCcCHhHcCCccc
Confidence 344444444444444332 255555555552 111111 124555555555555555 3333 445555555
Q ss_pred CcEEeccC--CCccCcc-ccCCCccceec--CcCCCcc-CcccccccCCceeEeccccc
Q 045633 437 LRYLQLSS--VEELPET-CCELLNLQTLD--CLSLKRL-PQGIGKLINLRHLIFDVFGV 489 (794)
Q Consensus 437 L~~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~l-p~~~~~L~~L~~L~l~~~~l 489 (794)
|++|+|++ +..+|.. +.++.+|++|+ .+.+..+ |..+..+++|++|++++|.+
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 55555555 4444432 44455555554 3334333 33344445555555544433
No 142
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=1.8e-08 Score=104.48 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=104.1
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCcccccc-C-CeEEEEEecCCCCHHHHHHHHHHHhcCCC
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN-F-DKRIWVCVSDPFDEFRIAKAIIEGLEGSL 80 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-f-~~~~~v~~~~~~~~~~~~~~i~~~l~~~~ 80 (794)
.+.+..++... ..+.+.|+|++|+||||+|+.+++ ..... + ..+++++.+....... .++++..+....
T Consensus 30 ~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~ 100 (323)
T 1sxj_B 30 IDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGIDV-VRNQIKHFAQKK 100 (323)
T ss_dssp HHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSHHH-HHTHHHHHHHBC
T ss_pred HHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccChHH-HHHHHHHHHhcc
Confidence 34555555433 233388999999999999999987 33221 1 1244444443222222 122222211000
Q ss_pred CCCCCHHHHHHHHHhHc-CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhh-hh-cccccceEEccCC
Q 045633 81 PNLGELNSLLEYIHTSI-KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETV-AR-MMESTDVISIKEL 157 (794)
Q Consensus 81 ~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~-~~~~~~~~~l~~l 157 (794)
..+ .+++.++|+||++.......+.+...+.....++++|+||+...- .. .......+.+.++
T Consensus 101 --------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~ 166 (323)
T 1sxj_B 101 --------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKL 166 (323)
T ss_dssp --------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred --------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCC
Confidence 012 356899999999665545555666666555557788888876431 11 1123458999999
Q ss_pred ChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCch-HHHHHHh
Q 045633 158 SEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPL-AAKTIGS 205 (794)
Q Consensus 158 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 205 (794)
+.++..+++...+...+.... .+.+..+++.++|.|. |+..+..
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 167 SDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp CHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999887643322211 3456778899999995 4555443
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.78 E-value=2.1e-08 Score=94.97 Aligned_cols=125 Identities=16% Similarity=0.203 Sum_probs=85.2
Q ss_pred cEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC---CCCCCCcceeeecccccceEeCcccccCcccCCCc
Q 045633 606 ESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP---LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNH 682 (794)
Q Consensus 606 ~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~---l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~ 682 (794)
+.++++++....+ |..+. .+|+.|++++|. +..++. ++.+++|++|+++++. ++.++..
T Consensus 11 ~~l~~s~~~l~~i---p~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----------- 72 (192)
T 1w8a_A 11 TTVDCTGRGLKEI---PRDIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN----------- 72 (192)
T ss_dssp TEEECTTSCCSSC---CSCCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT-----------
T ss_pred CEEEcCCCCcCcC---ccCCC--CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCC-CCCcCHh-----------
Confidence 5677777776665 65443 388888888884 444442 6778888888888743 4433221
Q ss_pred cccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCCCccEEEeccCcc
Q 045633 683 IHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRSTTLESLEIGEAPI 759 (794)
Q Consensus 683 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~~L~~L~l~~~~~ 759 (794)
.+..+++|+.|++++ +++..+.. ..+..+++|+.|++++|..-...|..+..+++|++|++++|+.
T Consensus 73 --------~~~~l~~L~~L~Ls~-N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 73 --------AFEGASHIQELQLGE-NKIKEISN--KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp --------TTTTCTTCCEEECCS-CCCCEECS--SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred --------HcCCcccCCEEECCC-CcCCccCH--HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 145678888888887 35555542 3355788899999988843334467777888899999988875
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.75 E-value=5.8e-09 Score=116.12 Aligned_cols=197 Identities=16% Similarity=0.133 Sum_probs=128.6
Q ss_pred CcceEEEEEecccccCcccccCCCCccEEEEcccCcc--------hhhhhhhhHHHhccCCccceEE-EcccCCCccccc
Q 045633 356 EKLRHLTLMLGLRAKFPVSIFDAKKLRSLILFDVTED--------QSAASRGLQGLFDQLTCLRALK-IEDFGLGDKTIE 426 (794)
Q Consensus 356 ~~~r~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------~~~~~~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~ 426 (794)
..+++|.+..+....+|..+..+++|+.|++.++... ........+..+..+++|+.|+ ++.+. +..
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~----~~~ 424 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY----LDD 424 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH----HHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc----cch
Confidence 3445556666666667777777888888877544100 0012334566778888899888 55554 222
Q ss_pred cCc------cccC--ccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCcccccccCCceeEecccccccCCC
Q 045633 427 IPR------GLEN--LIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGKLINLRHLIFDVFGVDYVPN 494 (794)
Q Consensus 427 lp~------~i~~--l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~L~~L~~L~l~~~~l~~lp~ 494 (794)
++. .+.. ...|++|+|++ +..+|. +++|.+|+.|+ .+.+..+|..++.|++|++|++++|.++.+|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp- 502 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-
Confidence 221 1111 12599999998 889997 99999999999 6788999999999999999999999999998
Q ss_pred CCCCCCCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEE
Q 045633 495 GFERLTGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLI 566 (794)
Q Consensus 495 ~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 566 (794)
.++.+++|+.|++..+.- .+. .....+..|++|+ .+.+.+.. +..........+..+++|+.|+
T Consensus 503 ~l~~l~~L~~L~Ls~N~l-~~~-----~~p~~l~~l~~L~-~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRL-QQS-----AAIQPLVSCPRLV-LLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGTTCSSCCEEECCSSCC-CSS-----STTGGGGGCTTCC-EEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred ccCCCCCCcEEECCCCCC-CCC-----CCcHHHhcCCCCC-EEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 899999999998654322 110 0023455566666 66665321 1111111112233467888875
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.75 E-value=1.6e-08 Score=95.70 Aligned_cols=95 Identities=26% Similarity=0.385 Sum_probs=51.9
Q ss_pred ccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCc-cccCCCccceec--CcCCCccCc-ccccccCCcee
Q 045633 409 CLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPE-TCCELLNLQTLD--CLSLKRLPQ-GIGKLINLRHL 482 (794)
Q Consensus 409 ~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~-~i~~L~~L~~L~--~~~l~~lp~-~~~~L~~L~~L 482 (794)
+|++|++++|. +..+|..+.++.+|++|+|++ +..+|. .|.+|.+|++|+ .+.+..+|. .+..+++|++|
T Consensus 32 ~l~~L~L~~n~----i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 32 DVTELYLDGNQ----FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp TCCEEECCSSC----CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCc----CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 45555555555 445555555555555555554 444443 355555555555 344555543 35566666666
Q ss_pred EecccccccCCCC-CCCCCCCCccCc
Q 045633 483 IFDVFGVDYVPNG-FERLTGLRTLSG 507 (794)
Q Consensus 483 ~l~~~~l~~lp~~-i~~l~~L~~L~~ 507 (794)
+++.|.+..+|.. +..+++|+.|++
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred ECCCCCCCeeChhhhhcCccccEEEe
Confidence 6666666666543 555666666553
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.74 E-value=1.9e-08 Score=93.90 Aligned_cols=117 Identities=24% Similarity=0.345 Sum_probs=50.4
Q ss_pred EEEEEecccccCcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCcc-ccCccCCc
Q 045633 360 HLTLMLGLRAKFPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRG-LENLIHLR 438 (794)
Q Consensus 360 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~-i~~l~~L~ 438 (794)
.+.+..+....+|..+ .++++.|+++++. +....+..|..+++|++|++++|. +..+|.. ++.+++|+
T Consensus 11 ~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGI--PSSATRLELESNK-----LQSLPHGVFDKLTQLTKLSLSQNQ----IQSLPDGVFDKLTKLT 79 (177)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSC----CCCCCTTTTTTCTTCC
T ss_pred EEEecCCCCccCCCCC--CCCCcEEEeCCCc-----ccEeCHHHhcCcccccEEECCCCc----ceEeChhHccCCCccC
Confidence 3444444444344322 2455555555542 112223334455555555555555 3344332 34555555
Q ss_pred EEeccC--CCccCcc-ccCCCccceec--CcCCCccCcc-cccccCCceeEeccc
Q 045633 439 YLQLSS--VEELPET-CCELLNLQTLD--CLSLKRLPQG-IGKLINLRHLIFDVF 487 (794)
Q Consensus 439 ~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~~L~l~~~ 487 (794)
+|++++ +..+|.. +.++.+|++|+ .+.+..+|.. +..+++|++|+++.|
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 555554 4444432 34444444444 2334444333 233444444444443
No 147
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.73 E-value=6.1e-08 Score=100.51 Aligned_cols=156 Identities=15% Similarity=0.064 Sum_probs=92.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
.+.|.|+|++|+|||++|+.+++ .... ..++++........++ ...+...+ .+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~--~~~~---~~~~~~~~~~~~~~~l---------------------~~~l~~~~-~~ 90 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAH--ELGV---NLRVTSGPAIEKPGDL---------------------AAILANSL-EE 90 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHH--HHTC---CEEEECTTTCCSHHHH---------------------HHHHTTTC-CT
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HhCC---CEEEEeccccCChHHH---------------------HHHHHHhc-cC
Confidence 35688999999999999999987 3322 2344544332222111 11111111 24
Q ss_pred eEEEEEeCCCCCCccChhhhHhhccCCC------------------CCcEEEEEccchh-hhhc-ccc-cceEEccCCCh
Q 045633 101 KFFLILDDVWTDDHSKWEPFHNCLMNGL------------------CGSRILVTTRKET-VARM-MES-TDVISIKELSE 159 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iivTtr~~~-v~~~-~~~-~~~~~l~~l~~ 159 (794)
+.+|++|+++.........+...+.... ++.++|.||.... +... ... ..++.+.+++.
T Consensus 91 ~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~ 170 (324)
T 1hqc_A 91 GDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTP 170 (324)
T ss_dssp TCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCH
T ss_pred CCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCH
Confidence 5689999996654434444444333211 2345666666432 1111 111 35899999999
Q ss_pred HhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHHhhh
Q 045633 160 HECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIGSLL 207 (794)
Q Consensus 160 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 207 (794)
++..+++...+...+.... .+....++++++|.|..+..+...+
T Consensus 171 ~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 171 EELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999887754433222 3456778889999998876655443
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.72 E-value=1.8e-10 Score=110.03 Aligned_cols=105 Identities=17% Similarity=0.110 Sum_probs=49.2
Q ss_pred cccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCcc
Q 045633 374 SIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPET 451 (794)
Q Consensus 374 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~ 451 (794)
.+..+++|++|+++++.. .. ++ .+..+++|++|++++|. +..+|..+..+++|++|++++ +..+| .
T Consensus 43 ~~~~l~~L~~L~ls~n~l-----~~-l~-~~~~l~~L~~L~l~~n~----l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~ 110 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI-----EK-IS-SLSGMENLRILSLGRNL----IKKIENLDAVADTLEELWISYNQIASLS-G 110 (198)
T ss_dssp HHHHTTTCSEEECSEEEE-----SC-CC-CHHHHTTCCEEEEEEEE----ECSCSSHHHHHHHCSEEEEEEEECCCHH-H
T ss_pred HHhcCCCCCEEECCCCCC-----cc-cc-ccccCCCCCEEECCCCC----cccccchhhcCCcCCEEECcCCcCCcCC-c
Confidence 444455555555554421 11 22 24445555555555555 444454444455555555554 44444 3
Q ss_pred ccCCCccceec--CcCCCccCc--ccccccCCceeEecccccc
Q 045633 452 CCELLNLQTLD--CLSLKRLPQ--GIGKLINLRHLIFDVFGVD 490 (794)
Q Consensus 452 i~~L~~L~~L~--~~~l~~lp~--~~~~L~~L~~L~l~~~~l~ 490 (794)
++++.+|++|+ .+.+..+|. .+..+++|++|++++|.+.
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 44455555554 233444332 3444555555555444443
No 149
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.71 E-value=2.1e-07 Score=93.91 Aligned_cols=164 Identities=9% Similarity=-0.020 Sum_probs=95.7
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccC------C-eEEEEEecCCCCHHHHHHHHHH
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF------D-KRIWVCVSDPFDEFRIAKAIIE 74 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f------~-~~~~v~~~~~~~~~~~~~~i~~ 74 (794)
|.++|...|.... ..+..+.+.|+|++|+|||++|+++++. ..... . .+++|++....+...++..|++
T Consensus 28 E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~ 103 (318)
T 3te6_A 28 DFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDE--LITSSARKELPIFDYIHIDALELAGMDALYEKIWF 103 (318)
T ss_dssp HHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhhhccCCceEEEEEeccccCCHHHHHHHHHH
Confidence 4455555544322 1235677889999999999999999984 32211 1 3567777777888899999999
Q ss_pred HhcCCCCCCCCHHHHHHHHHhHc---CCceEEEEEeCCCCCCccChhhhHhhccC-CCCCc--EEEEEccchh-----hh
Q 045633 75 GLEGSLPNLGELNSLLEYIHTSI---KGKKFFLILDDVWTDDHSKWEPFHNCLMN-GLCGS--RILVTTRKET-----VA 143 (794)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~~~l~~~l~~-~~~gs--~iivTtr~~~-----v~ 143 (794)
++.+.........+....+...+ +++++++|||+++.-. +-+.+...+.+ ...++ .||.++...+ +.
T Consensus 104 ~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~ 181 (318)
T 3te6_A 104 AISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQIN 181 (318)
T ss_dssp HHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHH
T ss_pred HhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhhcc
Confidence 99654322222223333333333 4568999999995533 22233332221 01122 2333443321 11
Q ss_pred h----cccccceEEccCCChHhHHHHHHHHhhC
Q 045633 144 R----MMESTDVISIKELSEHECWSLFKRFAFS 172 (794)
Q Consensus 144 ~----~~~~~~~~~l~~l~~~ea~~Lf~~~~~~ 172 (794)
. .+. ...+.+++++.+|-.+++.+++..
T Consensus 182 ~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 182 IMPSLKAH-FTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp TCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 111 247899999999999999877654
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=8.4e-08 Score=99.58 Aligned_cols=287 Identities=12% Similarity=0.030 Sum_probs=163.1
Q ss_pred cCcceEEEEEecccccCcccccC-CCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC-cccc
Q 045633 355 QEKLRHLTLMLGLRAKFPVSIFD-AKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-RGLE 432 (794)
Q Consensus 355 ~~~~r~l~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~i~ 432 (794)
...+..|.+.+.........+.. +++|+.|+++++..... .... ..++.++.+.+..+. +| ..|.
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~---~~~~---~~~~~~~~~~~~~~~-------I~~~aF~ 90 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMY---SGKA---GTYPNGKFYIYMANF-------VPAYAFS 90 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCE---EESS---SSSGGGCCEEECTTE-------ECTTTTE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEe---cCcc---ccccccccccccccc-------cCHHHhc
Confidence 45677888776432211122223 78899999998832200 1111 122224555555543 22 3355
Q ss_pred C--------ccCCcEEeccC-CCccCcc-ccCCCccceec--CcCCCccCcc-cccccCCceeEecccccccCCCCCCCC
Q 045633 433 N--------LIHLRYLQLSS-VEELPET-CCELLNLQTLD--CLSLKRLPQG-IGKLINLRHLIFDVFGVDYVPNGFERL 499 (794)
Q Consensus 433 ~--------l~~L~~L~L~~-~~~lp~~-i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~i~~l 499 (794)
+ +.+|+.|+|.+ ++.++.. |.++.+|+.++ .+.+..++.. |.++.++..+..+.+.... ..
T Consensus 91 ~~~~~~~~g~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~------~~ 164 (329)
T 3sb4_A 91 NVVNGVTKGKQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR------FK 164 (329)
T ss_dssp EEETTEEEECTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH------TS
T ss_pred ccccccccccCCCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh------cc
Confidence 6 88899999887 8888764 88888888888 4556666553 5555555555443211100 01
Q ss_pred CCCCccCceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccc
Q 045633 500 TGLRTLSGFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEE 579 (794)
Q Consensus 500 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 579 (794)
..+.... +..+.. |+..+.+. ............-....++..+.+.+.-..
T Consensus 165 ~~i~~~~-----------------f~~~~~---L~~~i~~~---~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~------ 215 (329)
T 3sb4_A 165 NRWEHFA-----------------FIEGEP---LETTIQVG---AMGKLEDEIMKAGLQPRDINFLTIEGKLDN------ 215 (329)
T ss_dssp TTTTTSC-----------------EEESCC---CEEEEEEC---TTCCHHHHHHHTTCCGGGCSEEEEEECCCH------
T ss_pred ccccccc-----------------cccccc---cceeEEec---CCCcHHHHHhhcccCccccceEEEeeeecH------
Confidence 1111111 111111 11011111 111122222222223456677777655311
Q ss_pred cccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC--CCCCCCcc-e
Q 045633 580 APMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP--LGKLPSLE-I 656 (794)
Q Consensus 580 ~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~-~ 656 (794)
.........+++|+.+++.++....+- +..+.++.+|+.|+|.++ ++.++. +..+++|+ .
T Consensus 216 -------------~~~~~l~~~~~~L~~l~L~~n~i~~I~--~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 216 -------------ADFKLIRDYMPNLVSLDISKTNATTIP--DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp -------------HHHHHHHHHCTTCCEEECTTBCCCEEC--TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred -------------HHHHHHHHhcCCCeEEECCCCCcceec--HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEE
Confidence 111111123689999999988777761 445788999999999986 666665 88899999 9
Q ss_pred eeecccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEee
Q 045633 657 LRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMI 730 (794)
Q Consensus 657 L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 730 (794)
+++.+ .++.++... +.++++|+.|++.+ ++++.+. ...+..+++|+.|+.
T Consensus 279 l~l~~--~l~~I~~~a-------------------F~~c~~L~~l~l~~-n~i~~I~--~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 279 LELPA--SVTAIEFGA-------------------FMGCDNLRYVLATG-DKITTLG--DELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECT--TCCEECTTT-------------------TTTCTTEEEEEECS-SCCCEEC--TTTTCTTCCCCEEEC
T ss_pred EEEcc--cceEEchhh-------------------hhCCccCCEEEeCC-CccCccc--hhhhcCCcchhhhcc
Confidence 99986 677776543 45788999999865 4555554 445668888888763
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.69 E-value=9.7e-08 Score=89.08 Aligned_cols=125 Identities=21% Similarity=0.227 Sum_probs=91.2
Q ss_pred ccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC--CCCCCCcceeeecccccceEeCcccccCcccCCCc
Q 045633 605 IESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP--LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNH 682 (794)
Q Consensus 605 L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~ 682 (794)
.+.++++++....+ |.. ..++|+.|++++|. +..++. ++.+++|++|+++++ .++.++...
T Consensus 9 ~~~l~~~~~~l~~~---p~~--~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~---------- 71 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV---PTG--IPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGV---------- 71 (177)
T ss_dssp TTEEECCSSCCSSC---CTT--CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT----------
T ss_pred CCEEEecCCCCccC---CCC--CCCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhH----------
Confidence 45677777766655 643 34789999999985 445554 688899999999875 455554332
Q ss_pred cccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCc-cCCCCccEEEeccCcc
Q 045633 683 IHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQL-LRSTTLESLEIGEAPI 759 (794)
Q Consensus 683 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~-~~l~~L~~L~l~~~~~ 759 (794)
+..+++|+.|+++++ ++..++. ..+..+++|+.|++++| .++.+|... ..+++|++|++++|+.
T Consensus 72 ---------~~~l~~L~~L~l~~N-~l~~~~~--~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 72 ---------FDKLTKLTILYLHEN-KLQSLPN--GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ---------TTTCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ---------ccCCCccCEEECCCC-CccccCH--HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 457889999999884 5555432 23457899999999999 678888754 6789999999999985
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.59 E-value=1.3e-06 Score=92.59 Aligned_cols=238 Identities=12% Similarity=0.114 Sum_probs=136.8
Q ss_pred ccCccCCcEEeccC-CCccCcc-ccCCCccceec-CcCCCccCc-ccccccCCceeEecccccccCCCCCCCCCCCCccC
Q 045633 431 LENLIHLRYLQLSS-VEELPET-CCELLNLQTLD-CLSLKRLPQ-GIGKLINLRHLIFDVFGVDYVPNGFERLTGLRTLS 506 (794)
Q Consensus 431 i~~l~~L~~L~L~~-~~~lp~~-i~~L~~L~~L~-~~~l~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 506 (794)
|.+. +|+.+.+.+ ++.++.. |.+ .+|+.+. -.+++.++. .|.++.+|+.+++..|.+..+|.+.-..++|+.+.
T Consensus 132 F~~~-~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEGLKSIGDMAFFN-STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVL 209 (401)
T ss_dssp TTTC-CCSEEECCTTCCEECTTTTTT-CCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEE
T ss_pred cccC-CccEEEeCCCccEECHHhcCC-CCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEE
Confidence 4443 566676665 6666543 444 3566666 335555543 36777777777777777777765543345555543
Q ss_pred ceEeccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCc
Q 045633 507 GFTVARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNE 586 (794)
Q Consensus 507 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~ 586 (794)
+- . ++..+ ....|..+.+|+.+.+..+- . ..+
T Consensus 210 lp---~----------------~l~~I------------------~~~aF~~~~~L~~l~l~~~l-~-----~I~----- 241 (401)
T 4fdw_A 210 LP---V----------------TLKEI------------------GSQAFLKTSQLKTIEIPENV-S-----TIG----- 241 (401)
T ss_dssp CC---T----------------TCCEE------------------CTTTTTTCTTCCCEECCTTC-C-----EEC-----
T ss_pred eC---C----------------chhee------------------hhhHhhCCCCCCEEecCCCc-c-----Ccc-----
Confidence 11 0 00000 01234455555555554321 0 000
Q ss_pred chhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCC----CcCCC--CCCCCCcceeeec
Q 045633 587 ENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRC----EIMPP--LGKLPSLEILRIA 660 (794)
Q Consensus 587 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l----~~l~~--l~~L~~L~~L~l~ 660 (794)
...+.. .+|+.+.+.+. ...+- +..+.++++|+.+++.++... ..++. +..+++|+.+.+.
T Consensus 242 ---------~~aF~~-~~L~~i~lp~~-i~~I~--~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 242 ---------QEAFRE-SGITTVKLPNG-VTNIA--SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp ---------TTTTTT-CCCSEEEEETT-CCEEC--TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred ---------cccccc-CCccEEEeCCC-ccEEC--hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 112333 56777777432 22221 455667888888888766321 13433 7778888888887
Q ss_pred ccccceEeCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCC
Q 045633 661 EMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLP 740 (794)
Q Consensus 661 ~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip 740 (794)
+ .++.++... +.++++|+.+.|.. +++.+. ..++..+ +|+.|.+.++ .+..++
T Consensus 309 ~--~i~~I~~~a-------------------F~~c~~L~~l~lp~--~l~~I~--~~aF~~~-~L~~l~l~~n-~~~~l~ 361 (401)
T 4fdw_A 309 E--SIRILGQGL-------------------LGGNRKVTQLTIPA--NVTQIN--FSAFNNT-GIKEVKVEGT-TPPQVF 361 (401)
T ss_dssp T--TCCEECTTT-------------------TTTCCSCCEEEECT--TCCEEC--TTSSSSS-CCCEEEECCS-SCCBCC
T ss_pred C--ceEEEhhhh-------------------hcCCCCccEEEECc--cccEEc--HHhCCCC-CCCEEEEcCC-CCcccc
Confidence 3 477776543 45678888888854 355443 4456677 9999999988 555555
Q ss_pred c-CccCC-CCccEEEeccCc
Q 045633 741 D-QLLRS-TTLESLEIGEAP 758 (794)
Q Consensus 741 ~-~~~~l-~~L~~L~l~~~~ 758 (794)
. .+..+ .+++.|++-.+.
T Consensus 362 ~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 362 EKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CSSCCCSCTTCCEEEECGGG
T ss_pred cccccCCCCCccEEEeCHHH
Confidence 4 34445 478899887654
No 153
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.58 E-value=2.1e-09 Score=102.65 Aligned_cols=102 Identities=22% Similarity=0.257 Sum_probs=84.0
Q ss_pred hHHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCccCccccCCCccceec--CcCCCccCccccc
Q 045633 400 LQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEELPETCCELLNLQTLD--CLSLKRLPQGIGK 475 (794)
Q Consensus 400 ~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~lp~~i~~L~~L~~L~--~~~l~~lp~~~~~ 475 (794)
++..+..+++|++|++++|. +..+| .+..+++|++|++++ +..+|..+..+.+|++|+ .+.+..+| .++.
T Consensus 40 l~~~~~~l~~L~~L~ls~n~----l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNN----IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEE----ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred hhHHHhcCCCCCEEECCCCC----Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 34468889999999999998 66787 788999999999998 888888888888999998 56777777 5888
Q ss_pred ccCCceeEecccccccCCC--CCCCCCCCCccCc
Q 045633 476 LINLRHLIFDVFGVDYVPN--GFERLTGLRTLSG 507 (794)
Q Consensus 476 L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~~ 507 (794)
+++|++|+++.|.+..+|. .+..+++|+.|++
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 9999999998888887664 5777788877764
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.55 E-value=1.3e-07 Score=87.64 Aligned_cols=72 Identities=29% Similarity=0.456 Sum_probs=32.8
Q ss_pred cCCcEEeccC--CCcc-CccccCCCccceec--CcCCCccCcc-cccccCCceeEecccccccCCCC-CCCCCCCCccC
Q 045633 435 IHLRYLQLSS--VEEL-PETCCELLNLQTLD--CLSLKRLPQG-IGKLINLRHLIFDVFGVDYVPNG-FERLTGLRTLS 506 (794)
Q Consensus 435 ~~L~~L~L~~--~~~l-p~~i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~ 506 (794)
.+|++|+|++ +..+ |..+.++.+|+.|+ .+.+..+|.. +..+++|++|+++.|.+..+|.. +..+++|+.|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 4444444444 3333 22344444444444 3344444443 34455555555555555544433 44444444444
No 155
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=1.6e-07 Score=97.57 Aligned_cols=158 Identities=13% Similarity=0.047 Sum_probs=95.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccC--CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHh---H
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHT---S 96 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~---~ 96 (794)
+.+.|+|++|+||||+|+.+++ ...... ..++.++.+....... ..+....... .
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 106 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGINV------------------IREKVKEFARTKPI 106 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHHHT------------------THHHHHHHHHSCCG
T ss_pred CeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEeeccccCchHH------------------HHHHHHHHHhhCCc
Confidence 3488999999999999999987 332211 1233343322111100 0011111111 1
Q ss_pred cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhh-hhc-ccccceEEccCCChHhHHHHHHHHhhCCC
Q 045633 97 IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETV-ARM-MESTDVISIKELSEHECWSLFKRFAFSGR 174 (794)
Q Consensus 97 l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~-~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~ 174 (794)
..+++.++|+|+++.........+...+.....++++|+||..... ... ......+.+.+++.++..+++...+...+
T Consensus 107 ~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~ 186 (327)
T 1iqp_A 107 GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG 186 (327)
T ss_dssp GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcC
Confidence 1256889999999665555566676666655567888888876431 111 12234789999999999999988765433
Q ss_pred CCCChhHHHHHHHHHHhhcCCCchHHHHH
Q 045633 175 SPTDCEQLEEIGRKIVGKCKGLPLAAKTI 203 (794)
Q Consensus 175 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 203 (794)
.... .+....|++.++|.|..+..+
T Consensus 187 ~~~~----~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 187 LELT----EEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp CEEC----HHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCC----HHHHHHHHHHCCCCHHHHHHH
Confidence 2221 345667888899999865433
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.51 E-value=1.8e-07 Score=86.33 Aligned_cols=92 Identities=25% Similarity=0.370 Sum_probs=56.2
Q ss_pred cceEEEcccCCCccccccCccccCccCCcEEeccC--CCcc-CccccCCCccceec--CcCCCccCcc-cccccCCceeE
Q 045633 410 LRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEEL-PETCCELLNLQTLD--CLSLKRLPQG-IGKLINLRHLI 483 (794)
Q Consensus 410 L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~l-p~~i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~~L~ 483 (794)
.+.++++++. +..+|..+. .+|++|+|++ +..+ |..+.++.+|++|+ .+.+..+|.. +..+++|++|+
T Consensus 11 ~~~l~~s~n~----l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKS----LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSC----CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCC----cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 3556666666 555665442 5666666665 5555 33466666666666 4556666554 46667777777
Q ss_pred ecccccccCCCC-CCCCCCCCccCc
Q 045633 484 FDVFGVDYVPNG-FERLTGLRTLSG 507 (794)
Q Consensus 484 l~~~~l~~lp~~-i~~l~~L~~L~~ 507 (794)
++.|.+..+|.. +..+++|+.|++
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEe
Confidence 766677666643 666666666653
No 157
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.46 E-value=1.9e-07 Score=92.14 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=89.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
..+.+.|+|++|+||||+|+.+++ ........++|+++...... + .+ .+ +.+ .
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~----------~----------~~---~~-~~~-~ 103 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHASI----------S----------TA---LL-EGL-E 103 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGS----------C----------GG---GG-TTG-G
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHH----------H----------HH---HH-Hhc-c
Confidence 346788999999999999999987 44433345677776431100 0 00 00 011 3
Q ss_pred ceEEEEEeCCCCCCccC--hhhhHhhccCC-CCC-cEEEEEccchh---------hhhcccccceEEccCCChHhHHHHH
Q 045633 100 KKFFLILDDVWTDDHSK--WEPFHNCLMNG-LCG-SRILVTTRKET---------VARMMESTDVISIKELSEHECWSLF 166 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTtr~~~---------v~~~~~~~~~~~l~~l~~~ea~~Lf 166 (794)
++.+||+||++...... .+.+...+... ..+ .++|+||+... +...+.....+.+.+++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 46789999995533222 23333332211 112 25788776422 1111111268999999999999999
Q ss_pred HHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHH
Q 045633 167 KRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTI 203 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 203 (794)
...+...+.... .+....+++.++|.+..+..+
T Consensus 184 ~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 184 QRRAAMRGLQLP----EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHTTCCCC----HHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHcCCCCC----HHHHHHHHHHccCCHHHHHHH
Confidence 887654332221 345667888888888766543
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.43 E-value=2.1e-07 Score=86.22 Aligned_cols=88 Identities=24% Similarity=0.313 Sum_probs=64.1
Q ss_pred CccceEEEcccCCCcccccc-CccccCccCCcEEeccC--CCccCcc-ccCCCccceec--CcCCCccCcc-cccccCCc
Q 045633 408 TCLRALKIEDFGLGDKTIEI-PRGLENLIHLRYLQLSS--VEELPET-CCELLNLQTLD--CLSLKRLPQG-IGKLINLR 480 (794)
Q Consensus 408 ~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~ 480 (794)
++|++|+|++|. +..+ |..|+++++|++|+|++ +..+|.. +.++.+|++|+ .+.+..+|.. +..+++|+
T Consensus 33 ~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQ----ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCcEEEeCCCC----ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCC
Confidence 567777777777 5555 55677777888888877 7777765 47778888887 5677777765 78888888
Q ss_pred eeEecccccccCCCCCCCC
Q 045633 481 HLIFDVFGVDYVPNGFERL 499 (794)
Q Consensus 481 ~L~l~~~~l~~lp~~i~~l 499 (794)
+|++++|.+...|..+..+
T Consensus 109 ~L~L~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 109 HIYLYNNPWDCECRDIMYL 127 (174)
T ss_dssp EEECCSSCBCTTBGGGHHH
T ss_pred EEEeCCCCcccccccHHHH
Confidence 8888888877666544433
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.42 E-value=1.6e-06 Score=91.77 Aligned_cols=173 Identities=12% Similarity=0.178 Sum_probs=96.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHh-------cCC-CCCCCCHHHHHHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGL-------EGS-LPNLGELNSLLEY 92 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l-------~~~-~~~~~~~~~~~~~ 92 (794)
.+.+.|+|+.|+||||+|+.+++. ....... . ............+.... ... .....+..+....
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~--l~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKG--LNCETGI-T----ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN 110 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHH--HSCTTCS-C----SSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--hCCCCCC-C----CCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHH
Confidence 356789999999999999988872 2221100 0 00000001111111100 000 0111223332222
Q ss_pred HHhH-cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhh-cccccceEEccCCChHhHHHHHHHH
Q 045633 93 IHTS-IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MMESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 93 l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
+... ..+++.++|+||++.........+...+.....+..+|++|.... +.. .......+++.+++.++..+++...
T Consensus 111 ~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~ 190 (373)
T 1jr3_A 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 (373)
T ss_dssp TTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred HhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHH
Confidence 2211 135678999999966555556667666665555677777776543 111 1223468899999999999999876
Q ss_pred hhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHHH
Q 045633 170 AFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTIG 204 (794)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 204 (794)
+...+.... .+.+..|++.++|.|..+..+.
T Consensus 191 ~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 191 LNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 643322211 3446678889999998775443
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.41 E-value=5.2e-06 Score=88.35 Aligned_cols=304 Identities=13% Similarity=0.069 Sum_probs=158.9
Q ss_pred ccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC-ccccCccCCcEEeccC-CCccCc
Q 045633 373 VSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-RGLENLIHLRYLQLSS-VEELPE 450 (794)
Q Consensus 373 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~-~~~lp~ 450 (794)
.++.+|.+|+++.+... ....-..+|.++.+|+.+++..+ +..++ ..+.++..|+.+.+.. +..++.
T Consensus 65 ~AF~~c~~L~~i~lp~~------i~~I~~~aF~~c~~L~~i~lp~~-----l~~I~~~aF~~c~~L~~i~~p~~l~~i~~ 133 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST------VREIGEFAFENCSKLEIINIPDS-----VKMIGRCTFSGCYALKSILLPLMLKSIGV 133 (394)
T ss_dssp TTTTTCTTEEEEECCTT------CCEECTTTTTTCTTCCEECCCTT-----CCEECTTTTTTCTTCCCCCCCTTCCEECT
T ss_pred HHhhCCCCceEEEeCCC------ccCcchhHhhCCCCCcEEEeCCC-----ceEccchhhcccccchhhcccCceeeecc
Confidence 35667788888887543 22233456788888888888643 44443 3467777888777765 555543
Q ss_pred c-ccCCCccceecCcCCCccCc-ccccccCCceeEecccccccCC-CCCCCCCCCCccCceEeccccCCCCCCccCcccc
Q 045633 451 T-CCELLNLQTLDCLSLKRLPQ-GIGKLINLRHLIFDVFGVDYVP-NGFERLTGLRTLSGFTVARVDGEYSSKACNLEGL 527 (794)
Q Consensus 451 ~-i~~L~~L~~L~~~~l~~lp~-~~~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~~~~~~~~~~~~~~~~~~l~~l 527 (794)
. +.+...++......+..+.. .+.++.+|+.+.+..+ +..++ ..+.++.+|+.+.+... +.. .....+..+
T Consensus 134 ~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~---I~~~~F~~~ 207 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKI---IRDYCFAEC 207 (394)
T ss_dssp TTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCE---ECTTTTTTC
T ss_pred eeeecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceE---eCchhhccc
Confidence 2 44444333333333333332 3677788888887432 34454 34667777777763210 000 001112222
Q ss_pred cccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccE
Q 045633 528 GNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIES 607 (794)
Q Consensus 528 ~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~ 607 (794)
..|..+. +.. ... ........+..|+.+.+...... .....+..+..|+.
T Consensus 208 ~~L~~i~----~~~--~~~----~i~~~~~~~~~l~~i~ip~~~~~--------------------i~~~~f~~~~~l~~ 257 (394)
T 4fs7_A 208 ILLENME----FPN--SLY----YLGDFALSKTGVKNIIIPDSFTE--------------------LGKSVFYGCTDLES 257 (394)
T ss_dssp TTCCBCC----CCT--TCC----EECTTTTTTCCCCEEEECTTCCE--------------------ECSSTTTTCSSCCE
T ss_pred cccceee----cCC--Cce----EeehhhcccCCCceEEECCCcee--------------------ccccccccccccee
Confidence 2222211 100 000 00111223345666555322100 00123455667777
Q ss_pred EEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC--CCCCCCcceeeecccccceEeCcccccCcccCCCcccc
Q 045633 608 LNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP--LGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHG 685 (794)
Q Consensus 608 L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~ 685 (794)
+.+..+...-. ...+..+..++.+...... ++. +..+.+|+.+.+.+ .++.++...
T Consensus 258 ~~~~~~~~~i~---~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~--~i~~I~~~a------------- 315 (394)
T 4fs7_A 258 ISIQNNKLRIG---GSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLD--SVKFIGEEA------------- 315 (394)
T ss_dssp EEECCTTCEEC---SCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECT--TCCEECTTT-------------
T ss_pred EEcCCCcceee---ccccccccccceeccCcee----ecccccccccccccccccc--ccceechhh-------------
Confidence 77754432211 3445566677766665431 222 45567777777753 355555432
Q ss_pred ccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCc-CccCCCCccEEEeccC
Q 045633 686 TFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPD-QLLRSTTLESLEIGEA 757 (794)
Q Consensus 686 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~-~~~~l~~L~~L~l~~~ 757 (794)
+.++.+|+.+.|.+ +++.+. ..++..+++|+.+.+..+ ++.|+. .+.++++|+.+++.++
T Consensus 316 ------F~~c~~L~~i~lp~--~v~~I~--~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 ------FESCTSLVSIDLPY--LVEEIG--KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ------TTTCTTCCEECCCT--TCCEEC--TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ------hcCCCCCCEEEeCC--cccEEh--HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 34567777777743 344432 345667788888888654 666654 4566788888888654
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.38 E-value=3.8e-06 Score=89.45 Aligned_cols=315 Identities=10% Similarity=0.046 Sum_probs=179.7
Q ss_pred CcceEEEEEecccccC-cccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCcccccc-CccccC
Q 045633 356 EKLRHLTLMLGLRAKF-PVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEI-PRGLEN 433 (794)
Q Consensus 356 ~~~r~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-p~~i~~ 433 (794)
..++.+.+-.. ...+ ..++.+|++|+.+.+..+ ....-..+|.++..|+.+.+..+ +..+ ...|.+
T Consensus 71 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~------l~~I~~~aF~~c~~L~~i~~p~~-----l~~i~~~aF~~ 138 (394)
T 4fs7_A 71 RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS------VKMIGRCTFSGCYALKSILLPLM-----LKSIGVEAFKG 138 (394)
T ss_dssp TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT------CCEECTTTTTTCTTCCCCCCCTT-----CCEECTTTTTT
T ss_pred CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC------ceEccchhhcccccchhhcccCc-----eeeecceeeec
Confidence 45666665422 3333 445778999999998654 22223456888888888766543 3333 234555
Q ss_pred ccCCcEEeccCCCccCc-cccCCCccceec-CcCCCccCcc-cccccCCceeEecccccccCC-CCCCCCCCCCccCceE
Q 045633 434 LIHLRYLQLSSVEELPE-TCCELLNLQTLD-CLSLKRLPQG-IGKLINLRHLIFDVFGVDYVP-NGFERLTGLRTLSGFT 509 (794)
Q Consensus 434 l~~L~~L~L~~~~~lp~-~i~~L~~L~~L~-~~~l~~lp~~-~~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~~~~ 509 (794)
+..+.......+..++. .+.++.+|+.+. -..+..++.. +.++.+|+.+.+..+ ++.++ ..+.++..|+.+.+..
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 55444444444444443 477778888877 3445556543 677888888887443 55554 3466777777665321
Q ss_pred eccccCCCCCCccCcccccccccCCCeeEEccccCCCChhhhhhccccCCCCCceEEEEecCCCCccccccccccCcchh
Q 045633 510 VARVDGEYSSKACNLEGLGNLNHLRGFLRICGLGNVTAADEAKNAHLEKKKNLVHLILDFTKREDEDYEEAPMWMNEENE 589 (794)
Q Consensus 510 ~~~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~ 589 (794)
....-+. ..- ....|+ .+.+.. .+. ......+..+..++.+.+..+...
T Consensus 218 ~~~~i~~------~~~---~~~~l~-~i~ip~--~~~---~i~~~~f~~~~~l~~~~~~~~~~~---------------- 266 (394)
T 4fs7_A 218 SLYYLGD------FAL---SKTGVK-NIIIPD--SFT---ELGKSVFYGCTDLESISIQNNKLR---------------- 266 (394)
T ss_dssp TCCEECT------TTT---TTCCCC-EEEECT--TCC---EECSSTTTTCSSCCEEEECCTTCE----------------
T ss_pred CceEeeh------hhc---ccCCCc-eEEECC--Cce---ecccccccccccceeEEcCCCcce----------------
Confidence 1100000 000 111222 333321 111 111234566778888877654311
Q ss_pred HHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCC--CCCCCCcceeeecccccceE
Q 045633 590 AKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPP--LGKLPSLEILRIAEMVSVKK 667 (794)
Q Consensus 590 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~~L~l~~~~~l~~ 667 (794)
.....+..++.++.+........ ...+..+.+|+.+.+..+ ++.++. +..+.+|+.+++.+ .++.
T Consensus 267 ----i~~~~F~~~~~l~~~~~~~~~i~-----~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~ 333 (394)
T 4fs7_A 267 ----IGGSLFYNCSGLKKVIYGSVIVP-----EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEE 333 (394)
T ss_dssp ----ECSCTTTTCTTCCEEEECSSEEC-----TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCE
T ss_pred ----eeccccccccccceeccCceeec-----cccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccE
Confidence 01234556677877766543211 234567889999998764 455544 77788999998863 4666
Q ss_pred eCcccccCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcCCCcCccCCC
Q 045633 668 VGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPDQLLRST 747 (794)
Q Consensus 668 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~~~~~l~ 747 (794)
++... +.++.+|+.+.+.. +++.+. ..++..+++|+.+.+..+ ++.+...+.+++
T Consensus 334 I~~~a-------------------F~~c~~L~~i~lp~--~l~~I~--~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~ 388 (394)
T 4fs7_A 334 IGKRS-------------------FRGCTSLSNINFPL--SLRKIG--ANAFQGCINLKKVELPKR--LEQYRYDFEDTT 388 (394)
T ss_dssp ECTTT-------------------TTTCTTCCEECCCT--TCCEEC--TTTBTTCTTCCEEEEEGG--GGGGGGGBCTTC
T ss_pred EhHHh-------------------ccCCCCCCEEEECc--cccEeh--HHHhhCCCCCCEEEECCC--CEEhhheecCCC
Confidence 65543 45678888888754 344443 456778899999998654 444544555566
Q ss_pred CccEE
Q 045633 748 TLESL 752 (794)
Q Consensus 748 ~L~~L 752 (794)
+|+.+
T Consensus 389 ~L~~I 393 (394)
T 4fs7_A 389 KFKWI 393 (394)
T ss_dssp EEEEE
T ss_pred CCcEE
Confidence 66554
No 162
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.37 E-value=4.6e-07 Score=83.66 Aligned_cols=82 Identities=26% Similarity=0.314 Sum_probs=61.4
Q ss_pred CccceEEEcccCCCcccccc-CccccCccCCcEEeccC--CCccCcc-ccCCCccceec--CcCCCccCcc-cccccCCc
Q 045633 408 TCLRALKIEDFGLGDKTIEI-PRGLENLIHLRYLQLSS--VEELPET-CCELLNLQTLD--CLSLKRLPQG-IGKLINLR 480 (794)
Q Consensus 408 ~~L~~L~l~~~~~~~~~~~l-p~~i~~l~~L~~L~L~~--~~~lp~~-i~~L~~L~~L~--~~~l~~lp~~-~~~L~~L~ 480 (794)
+.|++|+|++|. +..+ |..|..+.+|++|+|++ +..+|.. +.++.+|++|+ .+.++.+|.. +..+++|+
T Consensus 30 ~~l~~L~L~~N~----i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQ----ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCSSC----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEcCCCc----CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence 667788888887 5555 55677788888888877 7777765 57788888887 5677777764 78888899
Q ss_pred eeEecccccccCC
Q 045633 481 HLIFDVFGVDYVP 493 (794)
Q Consensus 481 ~L~l~~~~l~~lp 493 (794)
+|++++|.+...+
T Consensus 106 ~L~L~~N~~~c~c 118 (170)
T 3g39_A 106 HIWLLNNPWDCAC 118 (170)
T ss_dssp EEECCSSCBCTTB
T ss_pred EEEeCCCCCCCCc
Confidence 9998888776543
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.37 E-value=1.7e-06 Score=89.32 Aligned_cols=156 Identities=13% Similarity=0.055 Sum_probs=94.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccc-cCC-eEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhH--c
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIE-NFD-KRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTS--I 97 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~-~f~-~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--l 97 (794)
+.+.|+|++|+|||++|+.+++ .... .+. .++.++.+..... ....+........ +
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~ 98 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGI------------------DVVRHKIKEFARTAPI 98 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEEEETTSTTCT------------------TTSSHHHHHHHHSCCS
T ss_pred CeEEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEEEeCccccCh------------------HHHHHHHHHHHhcCCC
Confidence 3488999999999999999887 3211 111 1334444331111 1111111111111 1
Q ss_pred -CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhh-cccccceEEccCCChHhHHHHHHHHhhCCC
Q 045633 98 -KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MMESTDVISIKELSEHECWSLFKRFAFSGR 174 (794)
Q Consensus 98 -~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~ 174 (794)
.+++.++|+|+++.......+.+...+.....+.++|+||.... +.. .......+.+.+++.++..+++...+...+
T Consensus 99 ~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~ 178 (319)
T 2chq_A 99 GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEG 178 (319)
T ss_dssp SSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 25688999999965544445556666655556778888876543 111 112245899999999999999988775543
Q ss_pred CCCChhHHHHHHHHHHhhcCCCchHHH
Q 045633 175 SPTDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 175 ~~~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
.... .+....+++.++|.+..+.
T Consensus 179 ~~i~----~~~l~~l~~~~~G~~r~~~ 201 (319)
T 2chq_A 179 VKIT----EDGLEALIYISGGDFRKAI 201 (319)
T ss_dssp CCBC----HHHHHHHHHTTTTCHHHHH
T ss_pred CCCC----HHHHHHHHHHcCCCHHHHH
Confidence 3222 3446678888999987654
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.35 E-value=3.5e-06 Score=89.33 Aligned_cols=113 Identities=13% Similarity=0.165 Sum_probs=65.0
Q ss_pred CccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC-ccccCccCCcEEeccC--CCccCccccCCC
Q 045633 380 KLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-RGLENLIHLRYLQLSS--VEELPETCCELL 456 (794)
Q Consensus 380 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~--~~~lp~~i~~L~ 456 (794)
+|+.+.+..+ ....-..+|.++ .|+.+.+.. . +..++ ..|.++.+|+.++|++ +..+|...-...
T Consensus 136 ~L~~i~l~~~------i~~I~~~aF~~~-~L~~i~lp~-~----l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~ 203 (401)
T 4fdw_A 136 QIAKVVLNEG------LKSIGDMAFFNS-TVQEIVFPS-T----LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYA 203 (401)
T ss_dssp CCSEEECCTT------CCEECTTTTTTC-CCCEEECCT-T----CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTC
T ss_pred CccEEEeCCC------ccEECHHhcCCC-CceEEEeCC-C----ccEehHHHhhCcccCCeeecCCCcceEechhhEeec
Confidence 5777776543 222233445553 477777764 3 44553 4567777777777764 777776533346
Q ss_pred ccceec-CcCCCccCcc-cccccCCceeEecccccccCCCC-CCCCCCCCccC
Q 045633 457 NLQTLD-CLSLKRLPQG-IGKLINLRHLIFDVFGVDYVPNG-FERLTGLRTLS 506 (794)
Q Consensus 457 ~L~~L~-~~~l~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~ 506 (794)
+|+.+. -.+++.++.. |.++++|+.+.+.. +++.++.. +.+ .+|+.+.
T Consensus 204 ~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 204 GIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEE
T ss_pred ccCEEEeCCchheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEE
Confidence 677666 4446666543 66777777777743 35555433 333 4555543
No 165
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=7.5e-06 Score=85.78 Aligned_cols=183 Identities=11% Similarity=0.036 Sum_probs=101.1
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccC-CeEEEEEecCCCCHHHHHHHHHHHhc-CCC
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDPFDEFRIAKAIIEGLE-GSL 80 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~~~l~-~~~ 80 (794)
.+.+..++... ..+.+.|+|+.|+||||+|+.+++.......+ ..++.++.+.......+. +....+. ...
T Consensus 46 ~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 118 (353)
T 1sxj_D 46 VTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR-EKVKNFARLTV 118 (353)
T ss_dssp HHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT-THHHHHHHSCC
T ss_pred HHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHH-HHHHHHhhhcc
Confidence 34555555433 22337899999999999999998731111112 123444444433333222 2222211 111
Q ss_pred CCCCCHHHHHHHHHhHcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhhc-ccccceEEccCCC
Q 045633 81 PNLGELNSLLEYIHTSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VARM-MESTDVISIKELS 158 (794)
Q Consensus 81 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~-~~~~~~~~l~~l~ 158 (794)
...... .....-.+++-+|++|+++.........+...+.......++|++|.... +... ......+.+.+++
T Consensus 119 ~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~ 193 (353)
T 1sxj_D 119 SKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALD 193 (353)
T ss_dssp CCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCC
T ss_pred cccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCC
Confidence 100000 00111134567999999965544445556665555445667777775432 1111 1223478999999
Q ss_pred hHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHH
Q 045633 159 EHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 159 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
.++..+.+...+...+.... .+....|++.++|.|..+.
T Consensus 194 ~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~ 232 (353)
T 1sxj_D 194 ASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGI 232 (353)
T ss_dssp HHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHH
Confidence 99999999887654332222 3456778889999987644
No 166
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.29 E-value=5.2e-06 Score=85.79 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=65.7
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhh-cccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MMESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+++-++|+|+++.........+...+.....++.+|++|.+.. +.. .......+.+.+++.++..+++.... .
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~- 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T- 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-
Confidence 5678999999976655566677777766555677777776643 222 12334689999999999999998764 1
Q ss_pred CChhHHHHHHHHHHhhcCCCchHHHH
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPLAAKT 202 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Plal~~ 202 (794)
.. .+.+..+++.++|.|..+..
T Consensus 182 ~~----~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 182 MS----QDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp CC----HHHHHHHHHHTTTCHHHHHH
T ss_pred CC----HHHHHHHHHHcCCCHHHHHH
Confidence 11 23456788889999975543
No 167
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.26 E-value=3e-06 Score=90.88 Aligned_cols=160 Identities=15% Similarity=0.163 Sum_probs=94.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccC--CeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENF--DKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f--~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
...+.|+|++|+||||||+.+++ .....+ ..+++++.. ....++...+... .. ..+...++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 56788999999999999999998 444443 235566543 2344444444322 11 12333344
Q ss_pred CceEEEEEeCCCCCCc--cChhhhHhhccC-CCCCcEEEEEccchh---------hhhcccccceEEccCCChHhHHHHH
Q 045633 99 GKKFFLILDDVWTDDH--SKWEPFHNCLMN-GLCGSRILVTTRKET---------VARMMESTDVISIKELSEHECWSLF 166 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~l~~~ea~~Lf 166 (794)
.+.-+||+||++.... ...+.+...+.. ...|..||+||.... +...+....++.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3567999999954322 122333333321 124677888887621 1222222357889999999999999
Q ss_pred HHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHH
Q 045633 167 KRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
.+.+...+.... .+....|++.++|.+..+.
T Consensus 273 ~~~~~~~~~~i~----~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 273 RKMLEIEHGELP----EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHTCCCC----TTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHH
Confidence 887653222111 1235567788888886554
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.26 E-value=2.4e-06 Score=80.78 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccc-------cCCeEEEEEecCCCCHHHHHHHHHHH
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIE-------NFDKRIWVCVSDPFDEFRIAKAIIEG 75 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~-------~f~~~~~v~~~~~~~~~~~~~~i~~~ 75 (794)
.+++.+.+... ..+.|.|+|++|+|||++|+.+++ .... ....++++++.. .
T Consensus 31 ~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~------- 89 (195)
T 1jbk_A 31 IRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQ--RIINGEVPEGLKGRRVLALDMGA------L------- 89 (195)
T ss_dssp HHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHH--HHHHTCSCGGGTTCEEEEECHHH------H-------
T ss_pred HHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHH--HHHhCCCchhhcCCcEEEeeHHH------H-------
Confidence 45556665442 345678999999999999999987 3321 112344554321 0
Q ss_pred hcCCCCCCCCHHHHHHHHHhHc--CCceEEEEEeCCCCCC-------ccC-hhhhHhhccCCCCCcEEEEEccchhhhh-
Q 045633 76 LEGSLPNLGELNSLLEYIHTSI--KGKKFFLILDDVWTDD-------HSK-WEPFHNCLMNGLCGSRILVTTRKETVAR- 144 (794)
Q Consensus 76 l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-------~~~-~~~l~~~l~~~~~gs~iivTtr~~~v~~- 144 (794)
.... ............+.+.+ .+++.+||+||++... ... ...+...+.. .+..+|+||.......
T Consensus 90 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~ 166 (195)
T 1jbk_A 90 VAGA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQY 166 (195)
T ss_dssp HTTT-CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHH
T ss_pred hccC-CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHHH
Confidence 0000 00001111111222211 3568899999995431 112 2223332222 2445777776544211
Q ss_pred ------cccccceEEccCCChHhHHHHH
Q 045633 145 ------MMESTDVISIKELSEHECWSLF 166 (794)
Q Consensus 145 ------~~~~~~~~~l~~l~~~ea~~Lf 166 (794)
.......+.+.+++.++..+++
T Consensus 167 ~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 167 IEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 1122336888999888876653
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.24 E-value=3.2e-06 Score=88.38 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=20.3
Q ss_pred CchhccccCccEEeecCCCCCCcCCC--CCCCCCcceeeecc
Q 045633 622 SNWTASLDKLKRLDLAFCPRCEIMPP--LGKLPSLEILRIAE 661 (794)
Q Consensus 622 p~~~~~l~~L~~L~L~~~~~l~~l~~--l~~L~~L~~L~l~~ 661 (794)
|. +..+.+|+.|+|+++..+..++. ++.|++|+.|+|++
T Consensus 25 p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~ 65 (347)
T 2ifg_A 25 HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65 (347)
T ss_dssp TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS
T ss_pred CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC
Confidence 55 55555566666654223444442 55555555555554
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=2.3e-07 Score=96.59 Aligned_cols=144 Identities=20% Similarity=0.174 Sum_probs=83.2
Q ss_pred hCCCCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCC-cCCCC--CCCCCcceeeecccccceEeCc-ccc
Q 045633 598 ALQAPPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCE-IMPPL--GKLPSLEILRIAEMVSVKKVGD-EFL 673 (794)
Q Consensus 598 ~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~-~l~~l--~~L~~L~~L~l~~~~~l~~~~~-~~~ 673 (794)
.+..+|+|+.|.|+++....+ |. + .+++|++|+|..|.... .+..+ ..+|+|+.|+|+.+.... ... .+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l---~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~-~~~~~~~ 240 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSI---GK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDY-GFDGDMN 240 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBC---CS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGG-TCCSCGG
T ss_pred HHhcCCCCcEEEEeCCCCcee---cc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccc-ccchhHH
Confidence 344578899999988754454 44 3 37899999998774211 11122 368899999886321110 000 000
Q ss_pred cCcccCCCccccccCCCccccCCccceeeccccccccccccCCCCccCCCcccEEeeccCccCcC-----CCcCccCCCC
Q 045633 674 GIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKS-----LPDQLLRSTT 748 (794)
Q Consensus 674 ~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----ip~~~~~l~~ 748 (794)
.+. .......||+|+.|.+.+|.--......-.....+|+|+.|+++.| .++. ++..+.++++
T Consensus 241 ~l~-----------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~ 308 (362)
T 2ra8_A 241 VFR-----------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKH 308 (362)
T ss_dssp GTG-----------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTT
T ss_pred HHH-----------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCc
Confidence 000 0001236899999999775322111000000125789999999887 5544 4555566889
Q ss_pred ccEEEeccCcc
Q 045633 749 LESLEIGEAPI 759 (794)
Q Consensus 749 L~~L~l~~~~~ 759 (794)
|+.|++++|..
T Consensus 309 L~~L~L~~n~i 319 (362)
T 2ra8_A 309 LKFINMKYNYL 319 (362)
T ss_dssp CSEEECCSBBC
T ss_pred ceEEECCCCcC
Confidence 99999988853
No 171
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.19 E-value=2.4e-05 Score=81.22 Aligned_cols=152 Identities=14% Similarity=0.104 Sum_probs=88.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
..+.|.|+|++|+|||++|+.+++ +.... .+.++....... ......+.. ..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~--~~~~~---~~~~~~~~~~~~---------------------~~~~~~~~~--~~ 105 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISY--EMSAN---IKTTAAPMIEKS---------------------GDLAAILTN--LS 105 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH--HTTCC---EEEEEGGGCCSH---------------------HHHHHHHHT--CC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEecchhccch---------------------hHHHHHHHh--cc
Confidence 345688999999999999999987 33222 233443322111 111111211 23
Q ss_pred ceEEEEEeCCCCCCccChhhhHhhccCCC------------------CCcEEEEEccchhhh-hc-cc-ccceEEccCCC
Q 045633 100 KKFFLILDDVWTDDHSKWEPFHNCLMNGL------------------CGSRILVTTRKETVA-RM-ME-STDVISIKELS 158 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~iivTtr~~~v~-~~-~~-~~~~~~l~~l~ 158 (794)
+..+|++|+++.........+...+.... ++.++|.||...... .. .. ....+.+.+++
T Consensus 106 ~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~ 185 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYK 185 (338)
T ss_dssp TTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred CCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcC
Confidence 56789999996554444444554443321 124566666543211 11 11 23689999999
Q ss_pred hHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHHH
Q 045633 159 EHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKTI 203 (794)
Q Consensus 159 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 203 (794)
.++..+++.+.+....... -.+....+++.+.|.|-.+..+
T Consensus 186 ~~e~~~il~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTC----EEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEE----CHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999988765433221 1345667888899999655443
No 172
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.15 E-value=9.1e-06 Score=86.92 Aligned_cols=156 Identities=20% Similarity=0.209 Sum_probs=86.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-hHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIH-TSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~ 98 (794)
.++.|.|||++|+||||+|+.+++ .....| +.++... .....+ +.++ .... ....
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f---~~l~a~~-~~~~~i-r~~~-----------------~~a~~~~~~ 104 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIAR--YANADV---ERISAVT-SGVKEI-REAI-----------------ERARQNRNA 104 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH--HTTCEE---EEEETTT-CCHHHH-HHHH-----------------HHHHHHHHT
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEEecc-CCHHHH-HHHH-----------------HHHHHhhhc
Confidence 346788999999999999999987 333222 2222211 122211 1111 1111 1124
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEE-Eccchh--hh-hcccccceEEccCCChHhHHHHHHHHhhCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILV-TTRKET--VA-RMMESTDVISIKELSEHECWSLFKRFAFSGR 174 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~--v~-~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~ 174 (794)
+++.+|++|+++.....+.+.+...+... ...+|. ||.+.. +. .......++.+.+++.++..+++.+.+....
T Consensus 105 ~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~ 182 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKT 182 (447)
T ss_dssp TCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTT
T ss_pred CCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHh
Confidence 67889999999776555566666666552 234444 444432 11 1123345889999999999999988765411
Q ss_pred CC---CChhHHHHHHHHHHhhcCCCchHHH
Q 045633 175 SP---TDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 175 ~~---~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
.. ....-..+....+++.++|.+..+.
T Consensus 183 ~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 183 RGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred hhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 10 1111123456667788888876554
No 173
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.13 E-value=6.4e-06 Score=85.02 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=86.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
....+.|+|++|+||||+|+.+++ .....-..++++++. .....+...+... ..+.. ...++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~--~~~~~~~~~~~i~~~------~~~~~~~~~~~~~-----~~~~~----~~~~~- 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSSAD------DFAQAMVEHLKKG-----TINEF----RNMYK- 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEEHH------HHHHHHHHHHHHT-----CHHHH----HHHHH-
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEEHH------HHHHHHHHHHHcC-----cHHHH----HHHhc-
Confidence 345688999999999999999987 332221235666543 2333333333211 11111 11221
Q ss_pred ceEEEEEeCCCCCCc--cChhhhHhhccC-CCCCcEEEEEccchh---------hhhcccccceEEccCCChHhHHHHHH
Q 045633 100 KKFFLILDDVWTDDH--SKWEPFHNCLMN-GLCGSRILVTTRKET---------VARMMESTDVISIKELSEHECWSLFK 167 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~~---------v~~~~~~~~~~~l~~l~~~ea~~Lf~ 167 (794)
+..+|++||++.... .....+...+.. ...|..||+||.... +...+....++++++ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 356999999954321 112223332221 123557888876421 111222235789999 9999999998
Q ss_pred HHhhCCCCCCChhHHHHHHHHHHhhcCCCchH
Q 045633 168 RFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLA 199 (794)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 199 (794)
..+...+.... .+....|++.+ |..-.
T Consensus 177 ~~~~~~~~~l~----~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 177 EKLKEFNLELR----KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTTCCCC----HHHHHHHHHHC-SSHHH
T ss_pred HHHHhcCCCCC----HHHHHHHHHhC-CCHHH
Confidence 87754333222 33455677777 66543
No 174
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=2.2e-05 Score=82.26 Aligned_cols=101 Identities=9% Similarity=0.090 Sum_probs=64.7
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhh-cccccceEEccCCChHhHHHHHHHHhhCCCCC
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MMESTDVISIKELSEHECWSLFKRFAFSGRSP 176 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~ 176 (794)
+++-++|+|++...+......+...+.....+..+|++|.+.. +.. .......+.+.+++.++..+.+...+...+..
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 4677999999976555555566666655445678888877532 211 11234689999999999999998776433221
Q ss_pred CChhHHHHHHHHHHhhcCCCchHHHH
Q 045633 177 TDCEQLEEIGRKIVGKCKGLPLAAKT 202 (794)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~g~Plal~~ 202 (794)
... .+.+..|++.++|.+..+..
T Consensus 213 ~~~---~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 213 LET---KDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp ECC---SHHHHHHHHHHTTCHHHHHH
T ss_pred CCc---HHHHHHHHHHcCCCHHHHHH
Confidence 110 23456688888888865543
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=1.3e-05 Score=87.98 Aligned_cols=171 Identities=15% Similarity=0.183 Sum_probs=91.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
..+.+.|+|++|+||||+|+.+++ .. .+ .++.++++....... ....+........-..-...... .....+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~--~l--~~-~~i~in~s~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~ 147 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQ--EL--GY-DILEQNASDVRSKTL-LNAGVKNALDNMSVVGYFKHNEE--AQNLNG 147 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH--HT--TC-EEEEECTTSCCCHHH-HHHTGGGGTTBCCSTTTTTC------CCSST
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--Hc--CC-CEEEEeCCCcchHHH-HHHHHHHHhccccHHHHHhhhhh--hhhccC
Confidence 346888999999999999999987 33 12 245555555444332 22222221111000000000000 001235
Q ss_pred ceEEEEEeCCCCCCccC---hhhhHhhccCCCCCcEEEEEccchh---hhhcccccceEEccCCChHhHHHHHHHHhhCC
Q 045633 100 KKFFLILDDVWTDDHSK---WEPFHNCLMNGLCGSRILVTTRKET---VARMMESTDVISIKELSEHECWSLFKRFAFSG 173 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~~~---~~~l~~~l~~~~~gs~iivTtr~~~---v~~~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~ 173 (794)
++.+||+|+++...... +..+...+... +..||+++.+.. +.........+.+++++.++..+++...+...
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~ 225 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIRE 225 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 78899999995532221 24444443332 334666655432 22222334578999999999999987766543
Q ss_pred CCCCChhHHHHHHHHHHhhcCC-CchHHHHHH
Q 045633 174 RSPTDCEQLEEIGRKIVGKCKG-LPLAAKTIG 204 (794)
Q Consensus 174 ~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~ 204 (794)
+..... +....|++.++| ++.++..+.
T Consensus 226 ~~~i~~----~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 226 KFKLDP----NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TCCCCT----THHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCCH----HHHHHHHHHcCCcHHHHHHHHH
Confidence 322222 235667888888 555565554
No 176
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.01 E-value=6.5e-05 Score=79.03 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=56.1
Q ss_pred eEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc------------h-hhh-hcccccceEEccCCChHhHHHHH
Q 045633 101 KFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK------------E-TVA-RMMESTDVISIKELSEHECWSLF 166 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~------------~-~v~-~~~~~~~~~~l~~l~~~ea~~Lf 166 (794)
+.+|++|+++.........+...+...... .++++|.. . .+. ........+.+.+++.++..+++
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 268 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQIL 268 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHH
Confidence 359999999665545555566555443333 34444431 0 110 11122345899999999999999
Q ss_pred HHHhhCCCCCCChhHHHHHHHHHHhhcC-CCchHHH
Q 045633 167 KRFAFSGRSPTDCEQLEEIGRKIVGKCK-GLPLAAK 201 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~Plal~ 201 (794)
...+........ .+....|++.+. |.|..+.
T Consensus 269 ~~~~~~~~~~~~----~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 269 RIRCEEEDVEMS----EDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHTTCCBC----HHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHcCCCCC----HHHHHHHHHHhcCCCHHHHH
Confidence 887654333222 344566777776 6665443
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.01 E-value=7.5e-05 Score=74.29 Aligned_cols=161 Identities=11% Similarity=0.049 Sum_probs=84.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
..+.|.|+|++|+|||++|+.+++ +... ..+.++.+.-.+. . ...........+......
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~--~~~~---~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~a~~~ 97 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT--EAQV---PFLAMAGAEFVEV--------------I-GGLGAARVRSLFKEARAR 97 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH--HHTC---CEEEEETTTTSSS--------------S-TTHHHHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HhCC---CEEEechHHHHhh--------------c-cChhHHHHHHHHHHHHhc
Confidence 345677999999999999999987 3322 2344444331110 0 000011111222222234
Q ss_pred ceEEEEEeCCCCC------------Ccc---ChhhhHhhccCC--CCCcEEEEEccchhhhh-c-c---cccceEEccCC
Q 045633 100 KKFFLILDDVWTD------------DHS---KWEPFHNCLMNG--LCGSRILVTTRKETVAR-M-M---ESTDVISIKEL 157 (794)
Q Consensus 100 ~~~LlvlDdv~~~------------~~~---~~~~l~~~l~~~--~~gs~iivTtr~~~v~~-~-~---~~~~~~~l~~l 157 (794)
.+.+|++|+++.. ... .+..+...+... ..+..||.||....... . . .....+.++..
T Consensus 98 ~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p 177 (262)
T 2qz4_A 98 APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLP 177 (262)
T ss_dssp CSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSC
T ss_pred CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCc
Confidence 5789999999642 111 122333333221 23456666665543211 1 1 12357889999
Q ss_pred ChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCch-HHHHH
Q 045633 158 SEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPL-AAKTI 203 (794)
Q Consensus 158 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 203 (794)
+.++..+++...+........ .......+++.+.|.+- .|..+
T Consensus 178 ~~~~r~~il~~~~~~~~~~~~---~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 178 TLQERREIFEQHLKSLKLTQS---STFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CHHHHHHHHHHHHHHTTCCBT---HHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHCCCCCHHHHHHH
Confidence 999999999887654333221 12234667778887754 44433
No 178
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.00 E-value=8.3e-06 Score=85.21 Aligned_cols=82 Identities=15% Similarity=0.068 Sum_probs=38.5
Q ss_pred ccccCccccCccCCcEEecc--C-CCccCc-cccCCCccceec--CcCCCccCc-ccccccCCceeEecccccccCCCCC
Q 045633 424 TIEIPRGLENLIHLRYLQLS--S-VEELPE-TCCELLNLQTLD--CLSLKRLPQ-GIGKLINLRHLIFDVFGVDYVPNGF 496 (794)
Q Consensus 424 ~~~lp~~i~~l~~L~~L~L~--~-~~~lp~-~i~~L~~L~~L~--~~~l~~lp~-~~~~L~~L~~L~l~~~~l~~lp~~i 496 (794)
+..+|. +..+.+|++|+|+ + +..+|. .|++|.+|+.|+ .+.+..+|. .|.+|++|++|+|+.|.+..+|..+
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence 444444 4455555555554 1 444442 344555555555 334444433 3455555555555555555555433
Q ss_pred CCCCCCCccC
Q 045633 497 ERLTGLRTLS 506 (794)
Q Consensus 497 ~~l~~L~~L~ 506 (794)
....+|+.|+
T Consensus 100 ~~~~~L~~l~ 109 (347)
T 2ifg_A 100 VQGLSLQELV 109 (347)
T ss_dssp TCSCCCCEEE
T ss_pred cccCCceEEE
Confidence 2222244444
No 179
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.98 E-value=4.1e-05 Score=76.67 Aligned_cols=149 Identities=16% Similarity=0.201 Sum_probs=76.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
...+.|.|+|++|+|||++|+.+++ ... +. .+.++.+. .+.+. ............+.....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~--~~~--~~-~~~i~~~~-------------~~~g~-~~~~~~~~~~~~~~~~~~ 122 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE--ESN--FP-FIKICSPD-------------KMIGF-SETAKCQAMKKIFDDAYK 122 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH--HHT--CS-EEEEECGG-------------GCTTC-CHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH--HhC--CC-EEEEeCHH-------------HhcCC-chHHHHHHHHHHHHHHHh
Confidence 3567888999999999999999987 322 22 22333321 01000 000001112222333334
Q ss_pred CceEEEEEeCCCCC------C---cc-ChhhhHhhccC---CCCCcEEEEEccchhhhhc---ccc-cceEEccCCCh-H
Q 045633 99 GKKFFLILDDVWTD------D---HS-KWEPFHNCLMN---GLCGSRILVTTRKETVARM---MES-TDVISIKELSE-H 160 (794)
Q Consensus 99 ~~~~LlvlDdv~~~------~---~~-~~~~l~~~l~~---~~~gs~iivTtr~~~v~~~---~~~-~~~~~l~~l~~-~ 160 (794)
.+..+||+|+++.. . .. ....+...+.. ......||.||........ ... ...+.+++++. +
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~ 202 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGE 202 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHH
Confidence 67899999998431 1 11 11223332222 2223446667776543222 122 45688999988 5
Q ss_pred hHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCC
Q 045633 161 ECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKG 195 (794)
Q Consensus 161 ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 195 (794)
+..+++.+.. . .. .+....+++.+.|
T Consensus 203 ~i~~i~~~~~----~-~~----~~~~~~l~~~~~g 228 (272)
T 1d2n_A 203 QLLEALELLG----N-FK----DKERTTIAQQVKG 228 (272)
T ss_dssp HHHHHHHHHT----C-SC----HHHHHHHHHHHTT
T ss_pred HHHHHHHhcC----C-CC----HHHHHHHHHHhcC
Confidence 5556555421 1 11 2335567777776
No 180
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.97 E-value=3.5e-05 Score=77.86 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=82.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHH-HHHHhHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLL-EYIHTSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~ 98 (794)
..+.+.|+|++|+|||++|+.+++ ..... .+.+..+.- ..... ....... ..+.....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~--~~~~~---~~~v~~~~~--------------~~~~~--~~~~~~~~~~~~~~~~ 108 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT--ETNAT---FIRVVGSEL--------------VKKFI--GEGASLVKDIFKLAKE 108 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH--HTTCE---EEEEEGGGG--------------CCCST--THHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehHHH--------------HHhcc--chHHHHHHHHHHHHHH
Confidence 345588999999999999999987 33222 333333211 00000 1111111 22222223
Q ss_pred CceEEEEEeCCCCC-----------Cc---cChhhhHhhcc--CCCCCcEEEEEccchhhhh-----cccccceEEccCC
Q 045633 99 GKKFFLILDDVWTD-----------DH---SKWEPFHNCLM--NGLCGSRILVTTRKETVAR-----MMESTDVISIKEL 157 (794)
Q Consensus 99 ~~~~LlvlDdv~~~-----------~~---~~~~~l~~~l~--~~~~gs~iivTtr~~~v~~-----~~~~~~~~~l~~l 157 (794)
.++.+|++|+++.. .. ..+..+...+. ....+..||.||....... .......+.++..
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p 188 (285)
T 3h4m_A 109 KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAP 188 (285)
T ss_dssp TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCC
T ss_pred cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCC
Confidence 45689999999431 00 11122222222 1223567777887543221 1112347899999
Q ss_pred ChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCC-CchHHHH
Q 045633 158 SEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKG-LPLAAKT 202 (794)
Q Consensus 158 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~ 202 (794)
+.++..+++...+....... ... ...+++.+.| .|-.+..
T Consensus 189 ~~~~r~~il~~~~~~~~~~~-~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 189 DEKGRLEILKIHTRKMNLAE-DVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp CHHHHHHHHHHHHTTSCBCT-TCC----HHHHHHHCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCC-cCC----HHHHHHHcCCCCHHHHHH
Confidence 99999999988765433221 112 2445555665 4444443
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.96 E-value=5.2e-05 Score=77.58 Aligned_cols=135 Identities=15% Similarity=0.128 Sum_probs=76.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCcccccc--CC--eEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHh
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIEN--FD--KRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHT 95 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~--f~--~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 95 (794)
....|.|+|++|+|||++|+.+++ ..... .. .++.++.+. +...... .........+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~--~l~~~~~~~~~~~~~~~~~~--------------l~~~~~g-~~~~~~~~~~~~ 128 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG--LLHRLGYVRKGHLVSVTRDD--------------LVGQYIG-HTAPKTKEVLKR 128 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH--HHHHTTSSSSCCEEEECGGG--------------TCCSSTT-CHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HHHhcCCcCCCcEEEEcHHH--------------hhhhccc-ccHHHHHHHHHh
Confidence 445688999999999999998877 33221 11 233333211 1111100 011112222222
Q ss_pred HcCCceEEEEEeCCCCC---------CccChhhhHhhccCCCCCcEEEEEccchhhhh-------cc-cccceEEccCCC
Q 045633 96 SIKGKKFFLILDDVWTD---------DHSKWEPFHNCLMNGLCGSRILVTTRKETVAR-------MM-ESTDVISIKELS 158 (794)
Q Consensus 96 ~l~~~~~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-------~~-~~~~~~~l~~l~ 158 (794)
. +.-+|++|+++.. .......+...+.....+..||.||....... .. .....+.+++++
T Consensus 129 ~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~ 205 (309)
T 3syl_A 129 A---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYS 205 (309)
T ss_dssp H---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCC
T ss_pred c---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcC
Confidence 2 2349999999532 33334556665655555678888886533211 01 113689999999
Q ss_pred hHhHHHHHHHHhhCCC
Q 045633 159 EHECWSLFKRFAFSGR 174 (794)
Q Consensus 159 ~~ea~~Lf~~~~~~~~ 174 (794)
.++..+++...+....
T Consensus 206 ~~~~~~il~~~l~~~~ 221 (309)
T 3syl_A 206 DEELFEIAGHMLDDQN 221 (309)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999988765433
No 182
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.95 E-value=5.1e-05 Score=78.25 Aligned_cols=167 Identities=16% Similarity=0.115 Sum_probs=90.5
Q ss_pred HHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC
Q 045633 3 KNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN 82 (794)
Q Consensus 3 ~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~ 82 (794)
.+.+..++... ...+++.++|+.|+|||++|+.+++ ... ..++.++.+.. ... ..+..+.......
T Consensus 35 ~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~--~l~---~~~~~i~~~~~-~~~-~i~~~~~~~~~~~-- 100 (324)
T 3u61_B 35 KETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCH--DVN---ADMMFVNGSDC-KID-FVRGPLTNFASAA-- 100 (324)
T ss_dssp HHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHH--HTT---EEEEEEETTTC-CHH-HHHTHHHHHHHBC--
T ss_pred HHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHH--HhC---CCEEEEccccc-CHH-HHHHHHHHHHhhc--
Confidence 34555555532 2346777889999999999999987 332 23455654432 122 2222111111000
Q ss_pred CCCHHHHHHHHHhHcCCceEEEEEeCCCCCC-ccChhhhHhhccCCCCCcEEEEEccchhh-hhc-ccccceEEccCCCh
Q 045633 83 LGELNSLLEYIHTSIKGKKFFLILDDVWTDD-HSKWEPFHNCLMNGLCGSRILVTTRKETV-ARM-MESTDVISIKELSE 159 (794)
Q Consensus 83 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~v-~~~-~~~~~~~~l~~l~~ 159 (794)
...+++.++|+|+++... ....+.+...+.....+.++|+||....- ... .....++.+++++.
T Consensus 101 -------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~ 167 (324)
T 3u61_B 101 -------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTD 167 (324)
T ss_dssp -------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCH
T ss_pred -------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCH
Confidence 012478899999996544 33445555554443346788888876431 111 12235789999998
Q ss_pred HhHHHHH-------HHHhhCCCCCCChhHHHHHHHHHHhhcCCCchH
Q 045633 160 HECWSLF-------KRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLA 199 (794)
Q Consensus 160 ~ea~~Lf-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 199 (794)
++-.+++ ...+...+..... .+....+++.++|.+..
T Consensus 168 ~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 168 EDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHH
Confidence 8844332 2222221211111 14566677888777654
No 183
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.89 E-value=2.8e-06 Score=88.35 Aligned_cols=175 Identities=18% Similarity=0.145 Sum_probs=102.2
Q ss_pred HHHhhhCCCCCCccEEEEeecCCCc--c-----CCCCchhccccCccEEeecCCCCCCcCCCCCCCCCcceeeecccccc
Q 045633 593 EAICEALQAPPNIESLNITGFEGRR--L-----IFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLPSLEILRIAEMVSV 665 (794)
Q Consensus 593 ~~~~~~l~~~~~L~~L~l~~~~~~~--~-----~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~~L~~L~l~~~~~l 665 (794)
..+..+...+++|+.|.+.+..... + ...+.++..+++|+.|+|++|..+ .++.+. +++|+.|++..|.
T Consensus 129 ~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~-- 204 (362)
T 2ra8_A 129 DGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGG-- 204 (362)
T ss_dssp HHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSB--
T ss_pred HHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCC--
Confidence 3444455667899999996543210 0 011455667899999999988433 344443 8999999998654
Q ss_pred eEeCcccccCcccCCCccccccCCCccccCCccceeecccccc-------ccccccCCCCccCCCcccEEeeccCccCcC
Q 045633 666 KKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLDLWIMLQ-------LEEWDFGKEDITIMPQIKSLMIFSCEKLKS 738 (794)
Q Consensus 666 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~-------l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 738 (794)
++...... .....+|+|+.|+|....+ ++.+..... ...+|+|+.|.+++|.....
T Consensus 205 --l~~~~l~~--------------l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~-~~~~p~Lr~L~L~~~~i~~~ 267 (362)
T 2ra8_A 205 --LPDSVVED--------------ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS-KDRFPNLKWLGIVDAEEQNV 267 (362)
T ss_dssp --CCHHHHHH--------------HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC-TTTCTTCCEEEEESCTTHHH
T ss_pred --CChHHHHH--------------HHHccCCCCcEEEEeccccccccchhHHHHHHHHh-cCCCCCcCEEeCCCCCCchH
Confidence 22211100 0013689999999853211 111110000 12589999999999854322
Q ss_pred CCcCc---cCCCCccEEEeccCccccccccccCCCCCccccccceeeecccccc
Q 045633 739 LPDQL---LRSTTLESLEIGEAPIVEQNFKKDTGKDWSKISHIPNILISGRYEQ 789 (794)
Q Consensus 739 ip~~~---~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 789 (794)
.+..+ ..+++|++|+++.|. +.+.-.+.-...-.+..|+..+.+.+|++.
T Consensus 268 ~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 268 VVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 22111 247899999998875 433211111111246678888888888764
No 184
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=3.5e-06 Score=76.47 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=37.1
Q ss_pred ccCCccceeeccccccccccccCCCCccC----CCcccEEeeccCccCcC--CCcCccCCCCccEEEeccCccccc
Q 045633 693 VAFPKLEKLDLWIMLQLEEWDFGKEDITI----MPQIKSLMIFSCEKLKS--LPDQLLRSTTLESLEIGEAPIVEQ 762 (794)
Q Consensus 693 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~----l~~L~~L~l~~c~~l~~--ip~~~~~l~~L~~L~l~~~~~l~~ 762 (794)
.++++|+.|+|++|..+++.... .+.. .++|+.|+|++|++++. +. .+..+++|++|++++|+.+++
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~--~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLE--RLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHH--HHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEeCCCCccCHHHHH--HHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 34555666666665555443221 0112 24677777777766644 21 234567777777777776654
No 185
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=8.1e-05 Score=75.17 Aligned_cols=132 Identities=14% Similarity=-0.018 Sum_probs=83.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCcc-ccccCCeEEEEEecC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKD-VIENFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~-~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
.+...++|+.|+||||+|+.+++.-. .......+.+++.+. ...+..+ +++.+.+...+ ..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~~~~~p----------------~~ 80 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYSP----------------EL 80 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSCC----------------SS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHHHhhcc----------------cc
Confidence 67888999999999999998876200 111122344554332 2222222 22333332111 12
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch-hhhhcccccceEEccCCChHhHHHHHHHHh
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE-TVARMMESTDVISIKELSEHECWSLFKRFA 170 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~l~~l~~~ea~~Lf~~~~ 170 (794)
+++-++|+|+++.......+.+...+....+.+.+|++|.++ .+...+... ++++.+++.++..+.+.+..
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 467889999997766666777887777666677877777554 233322223 89999999999999998765
No 186
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.84 E-value=0.00054 Score=72.65 Aligned_cols=124 Identities=16% Similarity=0.122 Sum_probs=76.5
Q ss_pred cccCCC-CccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccC-ccccCccCCcEEeccC-CCccCc
Q 045633 374 SIFDAK-KLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIP-RGLENLIHLRYLQLSS-VEELPE 450 (794)
Q Consensus 374 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp-~~i~~l~~L~~L~L~~-~~~lp~ 450 (794)
++.+++ .|+++.+... ....-..+|.++.+|+.+.+..+.- ..+..+. ..|..+.+|+.+.+.. +..++.
T Consensus 58 aF~~~~~~L~sI~iP~s------vt~Ig~~AF~~C~~L~~i~~~~n~p-~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~ 130 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT------VTEIGSNAFYNCTSLKRVTIQDNKP-SCVKKIGRQAFMFCSELTDIPILDSVTEIDS 130 (394)
T ss_dssp TTTTCCSCCCEEEECTT------CCEECTTTTTTCTTCCEEEEGGGCC-CCCCEECTTTTTTCTTCCBCGGGTTCSEECT
T ss_pred hccCCCCcCEEEEECCC------eeEEhHHHhhCCccCceEeecCCCC-CeeeEechhhchhcccceeeccCCccceehh
Confidence 445554 5888887554 2333356688899999999877631 1144553 4577788888888776 777765
Q ss_pred c-ccCCCccceec-CcCCCccCcc-cccccCCceeEecccccccCCCCCCCCCCCCcc
Q 045633 451 T-CCELLNLQTLD-CLSLKRLPQG-IGKLINLRHLIFDVFGVDYVPNGFERLTGLRTL 505 (794)
Q Consensus 451 ~-i~~L~~L~~L~-~~~l~~lp~~-~~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 505 (794)
. +..+.+|+.+. -..+..++.. +....+|+.+.+.. .+..+....-...+|+.+
T Consensus 131 ~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~-~~~~I~~~aF~~~~l~~i 187 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPD-SVTAIEERAFTGTALTQI 187 (394)
T ss_dssp TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCCCSEE
T ss_pred hhhhhhcccccccccceeeeecccceecccccccccccc-eeeEeccccccccceeEE
Confidence 4 67777888777 3445555443 66777888887733 244444332223444444
No 187
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.84 E-value=2.3e-05 Score=74.54 Aligned_cols=100 Identities=23% Similarity=0.311 Sum_probs=54.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
+.|.|+|++|+|||+||+.+++ ........++|+++. .+...+...... .........+.+ .
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~~~-----~ 116 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYVP------ELFRELKHSLQD-----QTMNEKLDYIKK-----V 116 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEHH------HHHHHHHHC--------CCCHHHHHHHHH-----S
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEhH------HHHHHHHHHhcc-----chHHHHHHHhcC-----C
Confidence 6788999999999999999987 444444456777653 334444332211 112333333332 2
Q ss_pred EEEEEeCCCCCCccCh--hhhHh-hccCC-CCCcEEEEEccc
Q 045633 102 FFLILDDVWTDDHSKW--EPFHN-CLMNG-LCGSRILVTTRK 139 (794)
Q Consensus 102 ~LlvlDdv~~~~~~~~--~~l~~-~l~~~-~~gs~iivTtr~ 139 (794)
-+|||||++......| ..+.. .+... ..+.++|+||..
T Consensus 117 ~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 117 PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 3899999965332222 11222 22111 234578888874
No 188
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.83 E-value=0.00037 Score=71.26 Aligned_cols=161 Identities=19% Similarity=0.111 Sum_probs=85.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-hHcCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIH-TSIKG 99 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~ 99 (794)
.+-|.|+|++|+|||++|+++++ +... ...+.++.+.-. .... ...+.....+. ..-..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~--~~~~--~~~~~i~~~~l~--------------~~~~--g~~~~~~~~lf~~a~~~ 104 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT--EANN--STFFSISSSDLV--------------SKWL--GESEKLVKNLFQLAREN 104 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH--HTTS--CEEEEEECCSSC--------------CSSC--CSCHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHH--HcCC--CcEEEEEhHHHH--------------hhhh--hHHHHHHHHHHHHHHhc
Confidence 46788999999999999999997 3311 122334433211 1100 11122222222 22235
Q ss_pred ceEEEEEeCCCCCCc------cC-----hhhhHhhccC---CCCCcEEEEEccchhhhh-c-c-cccceEEccCCChHhH
Q 045633 100 KKFFLILDDVWTDDH------SK-----WEPFHNCLMN---GLCGSRILVTTRKETVAR-M-M-ESTDVISIKELSEHEC 162 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~------~~-----~~~l~~~l~~---~~~gs~iivTtr~~~v~~-~-~-~~~~~~~l~~l~~~ea 162 (794)
++.+|++|+++.... .. ...+...+.. ...+..||.||....... . . .....+.++..+.++.
T Consensus 105 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r 184 (322)
T 1xwi_A 105 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHAR 184 (322)
T ss_dssp SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHH
T ss_pred CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHH
Confidence 678999999954210 00 1122222222 223445555665432111 0 0 2245788999999999
Q ss_pred HHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCC-chHHHHHHh
Q 045633 163 WSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGL-PLAAKTIGS 205 (794)
Q Consensus 163 ~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 205 (794)
.+++............ ......|++.+.|. +-.|..+..
T Consensus 185 ~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 185 AAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999887654332222 23356678888887 444655543
No 189
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.83 E-value=1.9e-05 Score=73.52 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=55.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCcccc--ccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVI--ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~--~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
-+.++|+|+.|+||||||+.+++ ... ..+ .+++++ ..++...+......... ......+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~--~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~~-----~~~~~~~~---- 99 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK--AIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGKD-----TKFLKTVL---- 99 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH--HHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTCC-----SHHHHHHH----
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--HHHHHcCC-eEEEEE------HHHHHHHHHHHhcCchH-----HHHHHHhc----
Confidence 46789999999999999999987 332 222 344554 33444444443332211 12222222
Q ss_pred CceEEEEEeCCCCCCccChh--hhHhhccCC-CCCcEEEEEccc
Q 045633 99 GKKFFLILDDVWTDDHSKWE--PFHNCLMNG-LCGSRILVTTRK 139 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 139 (794)
+.-+|||||++......|. .+...+... ..|..+|+||..
T Consensus 100 -~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 100 -NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp -TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred -CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4568999999632222222 233322221 246778888874
No 190
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=0.00011 Score=76.32 Aligned_cols=157 Identities=10% Similarity=0.073 Sum_probs=87.7
Q ss_pred EEEEEecCCCcHHHHHHHHhCCcccccc-CC-eEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIEN-FD-KRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~-f~-~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
.+.++|+.|+||||+|+.+++ .+... +. .+..++.+.......+. ..+..+.... ..+.++
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~~~~~~~~~~~~~ir-~~i~~~~~~~--------------~~~~~~ 110 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAR--EIYGKNYSNMVLELNASDDRGIDVVR-NQIKDFASTR--------------QIFSKG 110 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHH--HHHTTSHHHHEEEECTTSCCSHHHHH-THHHHHHHBC--------------CSSSCS
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHcCCCccceEEEEcCcccccHHHHH-HHHHHHHhhc--------------ccCCCC
Confidence 388999999999999999887 32211 11 12223332222221111 1111111000 001234
Q ss_pred eEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh-hhh-cccccceEEccCCChHhHHHHHHHHhhCCCCCCC
Q 045633 101 KFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET-VAR-MMESTDVISIKELSEHECWSLFKRFAFSGRSPTD 178 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~-~~~~~~~~~l~~l~~~ea~~Lf~~~~~~~~~~~~ 178 (794)
+-++|+|+++.......+.+...+.......++|++|.... +.. .......+.+.+++.++..+.+...+...+....
T Consensus 111 ~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~ 190 (340)
T 1sxj_C 111 FKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS 190 (340)
T ss_dssp CEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 78899999965544445556555554445667777776532 111 1122347889999999999888876643332221
Q ss_pred hhHHHHHHHHHHhhcCCCchHH
Q 045633 179 CEQLEEIGRKIVGKCKGLPLAA 200 (794)
Q Consensus 179 ~~~~~~~~~~i~~~~~g~Plal 200 (794)
.+..+.+++.++|.+..+
T Consensus 191 ----~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 191 ----PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp ----HHHHHHHHHHHTTCHHHH
T ss_pred ----HHHHHHHHHHcCCCHHHH
Confidence 334667888888887643
No 191
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.80 E-value=0.002 Score=68.24 Aligned_cols=105 Identities=12% Similarity=0.187 Sum_probs=57.8
Q ss_pred hccccCccEEeecCCCCCCcCC--CCCCCCCcceeeecccccceEeCcccccCcccCCCccccccCCCccccCCccceee
Q 045633 625 TASLDKLKRLDLAFCPRCEIMP--PLGKLPSLEILRIAEMVSVKKVGDEFLGIGIRDHNHIHGTFSSSSVVAFPKLEKLD 702 (794)
Q Consensus 625 ~~~l~~L~~L~L~~~~~l~~l~--~l~~L~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L~~L~ 702 (794)
+.++.+|+.+.+.... ..+. .+..+++|+.+.+. ..++.++... +.++.+|+.+.
T Consensus 261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~a-------------------F~~c~~L~~i~ 317 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS--SRITELPESV-------------------FAGCISLKSID 317 (394)
T ss_dssp TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC--TTCCEECTTT-------------------TTTCTTCCEEE
T ss_pred eeecccccEEeccccc--ceecCcccccccccccccCC--CcccccCcee-------------------ecCCCCcCEEE
Confidence 4455666666664431 2222 24556666666664 2345554432 34556677776
Q ss_pred ccccccccccccCCCCccCCCcccEEeeccCccCcCCCc-CccCCCCccEEEeccCc
Q 045633 703 LWIMLQLEEWDFGKEDITIMPQIKSLMIFSCEKLKSLPD-QLLRSTTLESLEIGEAP 758 (794)
Q Consensus 703 l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ip~-~~~~l~~L~~L~l~~~~ 758 (794)
|.. +++.+. ..++..+++|+.+.|-.. ++.|.. .+.++++|+.+++.++.
T Consensus 318 lp~--~v~~I~--~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 318 IPE--GITQIL--DDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCT--TCCEEC--TTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred eCC--cccEeh--HhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence 643 233332 334556677777777433 555654 35567777777777654
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.79 E-value=0.00019 Score=74.55 Aligned_cols=156 Identities=17% Similarity=0.079 Sum_probs=83.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-hHcCCc
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIH-TSIKGK 100 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~ 100 (794)
+-|.|+|++|+|||++|+++++ ..... .+.++.+ . +.. ... ...+.....+. ..-..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~--~~~~~---~~~v~~~------~----l~~----~~~--g~~~~~~~~~f~~a~~~~ 143 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT--EANST---FFSVSSS------D----LVS----KWM--GESEKLVKQLFAMARENK 143 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH--HHTCE---EEEEEHH------H----HHS----CC-----CHHHHHHHHHHHHHTS
T ss_pred ceEEEECCCCCcHHHHHHHHHH--HhCCC---EEEeeHH------H----Hhh----hhc--chHHHHHHHHHHHHHHcC
Confidence 4577999999999999999997 33222 2333322 1 111 100 11112222222 222356
Q ss_pred eEEEEEeCCCCCCcc-----------ChhhhHhhccC---CCCCcEEEEEccchh-----hhhcccccceEEccCCChHh
Q 045633 101 KFFLILDDVWTDDHS-----------KWEPFHNCLMN---GLCGSRILVTTRKET-----VARMMESTDVISIKELSEHE 161 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~-----------~~~~l~~~l~~---~~~gs~iivTtr~~~-----v~~~~~~~~~~~l~~l~~~e 161 (794)
+.+|++|+++..... ....+...+.. ...+..||.||.... +.+ .....+.+...+.++
T Consensus 144 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 144 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAA 221 (355)
T ss_dssp SEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHH
T ss_pred CeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHH
Confidence 789999999542211 02223332221 223455666665442 222 234578899999999
Q ss_pred HHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCC-chHHHHHH
Q 045633 162 CWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGL-PLAAKTIG 204 (794)
Q Consensus 162 a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 204 (794)
..+++............ ......|++.+.|. +-.|..+.
T Consensus 222 r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 222 RTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999887754332222 22345677778774 54555444
No 193
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.78 E-value=6.5e-05 Score=66.88 Aligned_cols=90 Identities=14% Similarity=0.056 Sum_probs=53.1
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCceE
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKKF 102 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 102 (794)
-|.|+|..|+|||++|+.+++... +.... .+ +++....+. .... ..+... +.-
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~-~~~~~-~v-~~~~~~~~~------------------~~~~---~~~~~a---~~g 78 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGR-NAQGE-FV-YRELTPDNA------------------PQLN---DFIALA---QGG 78 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSST-TTTSC-CE-EEECCTTTS------------------SCHH---HHHHHH---TTS
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC-ccCCC-EE-EECCCCCcc------------------hhhh---cHHHHc---CCc
Confidence 367999999999999999987321 11112 23 666542221 1111 111111 223
Q ss_pred EEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccc
Q 045633 103 FLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRK 139 (794)
Q Consensus 103 LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 139 (794)
.|++|+++.........+...+.......++|.||..
T Consensus 79 ~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 79 TLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp CEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred EEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 6899999765555555666666555556688888774
No 194
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=2.3e-05 Score=71.12 Aligned_cols=91 Identities=9% Similarity=0.057 Sum_probs=67.5
Q ss_pred CCCCceEEEEecCCCCccccccccccCcchhHHHHHHhhhCCCCCCccEEEEeecCCCccCCCCchhcc----ccCccEE
Q 045633 559 KKNLVHLILDFTKREDEDYEEAPMWMNEENEAKQEAICEALQAPPNIESLNITGFEGRRLIFSSNWTAS----LDKLKRL 634 (794)
Q Consensus 559 ~~~L~~L~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~----l~~L~~L 634 (794)
...|+.|+++++..+ +.-+..+..+++|+.|+|++|...+... -..+.. .++|+.|
T Consensus 60 ~~~L~~LDLs~~~It-------------------d~GL~~L~~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L 119 (176)
T 3e4g_A 60 KYKIQAIDATDSCIM-------------------SIGFDHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEM 119 (176)
T ss_dssp CCCEEEEEEESCCCC-------------------GGGGGGGTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEE
T ss_pred CceEeEEeCcCCCcc-------------------HHHHHHhcCCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEE
Confidence 457999999999865 3334567789999999999998654310 112333 2479999
Q ss_pred eecCCCCCCc--CCCCCCCCCcceeeecccccceEeC
Q 045633 635 DLAFCPRCEI--MPPLGKLPSLEILRIAEMVSVKKVG 669 (794)
Q Consensus 635 ~L~~~~~l~~--l~~l~~L~~L~~L~l~~~~~l~~~~ 669 (794)
+|++|..+++ +..+..+++|+.|++++|+.++...
T Consensus 120 ~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 120 EIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp EEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCHH
T ss_pred EcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCchH
Confidence 9999987764 4447789999999999998776543
No 195
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.75 E-value=0.00016 Score=74.13 Aligned_cols=160 Identities=17% Similarity=0.076 Sum_probs=86.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-hHcCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIH-TSIKG 99 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~ 99 (794)
.+-|.|+|++|+|||++|+++++ +.... .+.|+.+. +.. .. ....+.....+. ..-..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~--~~~~~---~~~v~~~~----------l~~----~~--~g~~~~~~~~~f~~a~~~ 109 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT--EANST---FFSVSSSD----------LVS----KW--MGESEKLVKQLFAMAREN 109 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH--HHTCE---EEEEEHHH----------HHT----TT--GGGHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHCCC---EEEEchHH----------Hhh----cc--cchHHHHHHHHHHHHHhc
Confidence 45688999999999999999987 33322 23343321 111 00 011122222222 22234
Q ss_pred ceEEEEEeCCCCCCcc-----------ChhhhHhhcc---CCCCCcEEEEEccchhhhh-cc--cccceEEccCCChHhH
Q 045633 100 KKFFLILDDVWTDDHS-----------KWEPFHNCLM---NGLCGSRILVTTRKETVAR-MM--ESTDVISIKELSEHEC 162 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~iivTtr~~~v~~-~~--~~~~~~~l~~l~~~ea 162 (794)
++.+|++|+++..... ....+...+. ....+..||.||....... .+ .....+.+...+.++-
T Consensus 110 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r 189 (322)
T 3eie_A 110 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAAR 189 (322)
T ss_dssp SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHH
T ss_pred CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHH
Confidence 6689999999532110 0222333332 2234556666776533211 00 2245778899999999
Q ss_pred HHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCC-chHHHHHHh
Q 045633 163 WSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGL-PLAAKTIGS 205 (794)
Q Consensus 163 ~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 205 (794)
.+++...+......... .....+++.+.|. +-.|..+..
T Consensus 190 ~~il~~~~~~~~~~~~~----~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 190 TTMFEINVGDTPCVLTK----EDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp HHHHHHHHTTCCCCCCH----HHHHHHHHTTTTCCHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCH----HHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999887654332222 2345677777764 545554443
No 196
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00059 Score=70.53 Aligned_cols=152 Identities=17% Similarity=0.106 Sum_probs=81.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-hHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIH-TSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~ 98 (794)
.++=|.++|++|.|||.+|+++++ +.... .+.|+.+. +..... .+.+..+..+. ..-+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~--e~~~~---f~~v~~s~--------------l~sk~v--Gese~~vr~lF~~Ar~ 239 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAH--HTDCK---FIRVSGAE--------------LVQKYI--GEGSRMVRELFVMARE 239 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHH--HHTCE---EEEEEGGG--------------GSCSST--THHHHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHH--hhCCC---ceEEEhHH--------------hhcccc--chHHHHHHHHHHHHHH
Confidence 345677999999999999999998 44333 23344332 111110 11111122221 2223
Q ss_pred CceEEEEEeCCCCCCc--------c------ChhhhHhhccCC--CCCcEEEEEccchhh-----hhcccccceEEccCC
Q 045633 99 GKKFFLILDDVWTDDH--------S------KWEPFHNCLMNG--LCGSRILVTTRKETV-----ARMMESTDVISIKEL 157 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~--------~------~~~~l~~~l~~~--~~gs~iivTtr~~~v-----~~~~~~~~~~~l~~l 157 (794)
..+++|++|+++.... . .+..+...+... ..+..||.||...+. .+.-..+..+.++..
T Consensus 240 ~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lP 319 (405)
T 4b4t_J 240 HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP 319 (405)
T ss_dssp TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCC
T ss_pred hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCc
Confidence 5689999999964210 0 112233333322 234455666664432 111123678999999
Q ss_pred ChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCc
Q 045633 158 SEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLP 197 (794)
Q Consensus 158 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 197 (794)
+.++-.++|+.+....... ...++ ..+++.+.|.-
T Consensus 320 d~~~R~~Il~~~~~~~~l~-~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 320 SVAARAEILRIHSRKMNLT-RGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CHHHHHHHHHHHHTTSBCC-SSCCH----HHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCC-ccCCH----HHHHHHCCCCC
Confidence 9999999998776543322 11223 44666676654
No 197
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.68 E-value=1.9e-05 Score=70.43 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=26.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 61 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 61 (794)
+.++|+|+.|+|||||++.++.. ....=..+++++...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~--~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ--ALEAGKNAAYIDAAS 74 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH--HHTTTCCEEEEETTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEcHHH
Confidence 47889999999999999999873 322111266776543
No 198
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.66 E-value=3.5e-05 Score=72.13 Aligned_cols=36 Identities=22% Similarity=0.118 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+.+++.+.+... ..+.|.|+|++|+|||++|+.+++
T Consensus 30 ~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 30 EIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp HHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHH
Confidence 345566665442 345668999999999999999887
No 199
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.56 E-value=0.00056 Score=71.16 Aligned_cols=161 Identities=12% Similarity=0.022 Sum_probs=85.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-hHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIH-TSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~ 98 (794)
..+.|.|+|+.|+|||++|+++++ .... ..+.++.+.-.. ... ...+.....+. ..-.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~--~~~~---~~~~i~~~~l~~--------------~~~--g~~~~~~~~~~~~a~~ 174 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS--QSGA---TFFSISASSLTS--------------KWV--GEGEKMVRALFAVARC 174 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH--HTTC---EEEEEEGGGGCC--------------SST--THHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HcCC---eEEEEehHHhhc--------------ccc--chHHHHHHHHHHHHHh
Confidence 355788999999999999999987 3322 234455432111 000 01111112222 1223
Q ss_pred CceEEEEEeCCCCCCc-----------cChhhhHhhccCC----CCCcEEEEEccchh-hhhc-c-cccceEEccCCChH
Q 045633 99 GKKFFLILDDVWTDDH-----------SKWEPFHNCLMNG----LCGSRILVTTRKET-VARM-M-ESTDVISIKELSEH 160 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~-----------~~~~~l~~~l~~~----~~gs~iivTtr~~~-v~~~-~-~~~~~~~l~~l~~~ 160 (794)
.++.+|+||+++.... .....+...+... ..+..||.||.... +... . .....+.+...+.+
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~ 254 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEAS 254 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHH
Confidence 4678999999832100 0122333333321 22445665665432 1111 1 22347789999999
Q ss_pred hHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCC-CchHHHHHHh
Q 045633 161 ECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKG-LPLAAKTIGS 205 (794)
Q Consensus 161 ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~ 205 (794)
+..+++...+........ .+....|++.+.| .+-.|..+..
T Consensus 255 ~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 255 ARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999998877654332222 2345667777877 4555655544
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.54 E-value=0.00065 Score=72.84 Aligned_cols=162 Identities=16% Similarity=0.080 Sum_probs=83.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
..+-|.|+|++|+|||++|+++++ ... ..-++.++... +. ....+. .......+.... -..
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~--~~~----~~~~~~v~~~~----l~----~~~~g~--~~~~~~~~f~~a---~~~ 226 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVAT--EAN----NSTFFSISSSD----LV----SKWLGE--SEKLVKNLFQLA---REN 226 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHH--HCC----SSEEEEECCC-------------------CCCTHHHHHHHH---HHS
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HcC----CCCEEEEeHHH----HH----hhhcch--HHHHHHHHHHHH---HHc
Confidence 346788999999999999999997 331 12233333211 11 111111 111222222222 234
Q ss_pred ceEEEEEeCCCCCCc-------cCh----hhhHhhccC---CCCCcEEEEEccchhhhh-c-c-cccceEEccCCChHhH
Q 045633 100 KKFFLILDDVWTDDH-------SKW----EPFHNCLMN---GLCGSRILVTTRKETVAR-M-M-ESTDVISIKELSEHEC 162 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~-------~~~----~~l~~~l~~---~~~gs~iivTtr~~~v~~-~-~-~~~~~~~l~~l~~~ea 162 (794)
++.+|++|+++.... ... ..+...+.. ...+..||.||....... . . .....+.+...+.++.
T Consensus 227 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r 306 (444)
T 2zan_A 227 KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHAR 306 (444)
T ss_dssp CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHH
T ss_pred CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHH
Confidence 678999999964211 111 122222222 123556666776543211 0 1 2235788888899999
Q ss_pred HHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCC-chHHHHHH
Q 045633 163 WSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGL-PLAAKTIG 204 (794)
Q Consensus 163 ~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 204 (794)
.++|..++......... .....|++.+.|. +-.|..+.
T Consensus 307 ~~il~~~l~~~~~~l~~----~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 307 AAMFRLHLGSTQNSLTE----ADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHHHHHHHTTSCEECCH----HHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCH----HHHHHHHHHcCCCCHHHHHHHH
Confidence 99998876443321122 2345677778774 44555443
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.54 E-value=0.0008 Score=68.18 Aligned_cols=154 Identities=14% Similarity=0.056 Sum_probs=81.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
..+.|.|+|++|+|||++|+.+++ .... ..+.++ ..++. ....+.. .......+......
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~--~~~~---~~i~v~------~~~l~----~~~~g~~-----~~~~~~~f~~a~~~ 107 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN--ECQA---NFISIK------GPELL----TMWFGES-----EANVREIFDKARQA 107 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH--HTTC---EEEEEC------HHHHH----HHHHTTC-----TTHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHH--HhCC---CEEEEE------hHHHH----hhhcCch-----HHHHHHHHHHHHhc
Confidence 345688999999999999999997 3322 222332 12222 2222211 11122223333335
Q ss_pred ceEEEEEeCCCCCC--------------ccChhhhHhhccCC--CCCcEEEEEccchhhh-hc-c---cccceEEccCCC
Q 045633 100 KKFFLILDDVWTDD--------------HSKWEPFHNCLMNG--LCGSRILVTTRKETVA-RM-M---ESTDVISIKELS 158 (794)
Q Consensus 100 ~~~LlvlDdv~~~~--------------~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~-~~-~---~~~~~~~l~~l~ 158 (794)
.+.+|++|+++... ......+...+... ..+..||.||...... .. . .....+.+...+
T Consensus 108 ~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~ 187 (301)
T 3cf0_A 108 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 187 (301)
T ss_dssp CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcC
Confidence 67899999995310 00123344333321 2345677777654322 11 1 124578899999
Q ss_pred hHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCch
Q 045633 159 EHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPL 198 (794)
Q Consensus 159 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 198 (794)
.++-.+++.......... ..... ..+++.+.|.|=
T Consensus 188 ~~~r~~il~~~l~~~~~~-~~~~~----~~la~~~~g~sg 222 (301)
T 3cf0_A 188 EKSRVAILKANLRKSPVA-KDVDL----EFLAKMTNGFSG 222 (301)
T ss_dssp HHHHHHHHHHHHTTSCBC-SSCCH----HHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHccCCCC-ccchH----HHHHHHcCCCCH
Confidence 999999998776443221 11122 235555666653
No 202
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.53 E-value=0.00018 Score=73.60 Aligned_cols=110 Identities=15% Similarity=0.217 Sum_probs=58.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHhHcC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP--NLGELNSLLEYIHTSIK 98 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 98 (794)
...+.|+|+.|+|||++|+.+++ .....-...+.++++....... ...+ ++.... ...........+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~~-~~~l---~g~~~~~~~~~~~~~~~~~~~~--- 117 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKHA-VSRL---IGAPPGYVGYEEGGQLTEAVRR--- 117 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTTH-HHHH---HCCCTTSTTTTTCCHHHHHHHH---
T ss_pred ceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeeccccccccc-HHHh---cCCCCccccccccchHHHHHHh---
Confidence 46889999999999999999987 3322222355666654332211 1111 221111 11111222222222
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCC-----------CCcEEEEEccc
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGL-----------CGSRILVTTRK 139 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 139 (794)
...-+++||+++.........+...+.... .+..+|.||..
T Consensus 118 ~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 118 RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 234699999996655544555555543321 13347777765
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.51 E-value=0.0013 Score=66.63 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=82.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-hHcCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIH-TSIKG 99 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~ 99 (794)
.+.|.|+|++|+||||+|+.+++ .... ..+.++.+.-.. .. ..........+. .....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~--~~~~---~~~~i~~~~l~~--------------~~--~~~~~~~~~~~~~~~~~~ 112 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT--ECSA---TFLNISAASLTS--------------KY--VGDGEKLVRALFAVARHM 112 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH--HTTC---EEEEEESTTTSS--------------SS--CSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHH--HhCC---CeEEeeHHHHhh--------------cc--cchHHHHHHHHHHHHHHc
Confidence 45788999999999999999987 3322 223444432110 00 011222222222 22234
Q ss_pred ceEEEEEeCCCCCCcc-----------ChhhhHhhcc---CC--CCCcEEEEEccchhhh-hc-c-cccceEEccCCChH
Q 045633 100 KKFFLILDDVWTDDHS-----------KWEPFHNCLM---NG--LCGSRILVTTRKETVA-RM-M-ESTDVISIKELSEH 160 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~~-----------~~~~l~~~l~---~~--~~gs~iivTtr~~~v~-~~-~-~~~~~~~l~~l~~~ 160 (794)
++.+|++|+++..... ....+...+. .. +.+..||.||...... .. . .....+.+...+.+
T Consensus 113 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~ 192 (297)
T 3b9p_A 113 QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQ 192 (297)
T ss_dssp CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHH
T ss_pred CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHH
Confidence 6789999999442110 0111222221 11 1234566677654211 10 0 12356778888888
Q ss_pred hHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCch-HHHHHH
Q 045633 161 ECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPL-AAKTIG 204 (794)
Q Consensus 161 ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 204 (794)
+..+++...+........ .+....+++.+.|.+- ++..+.
T Consensus 193 ~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 193 TRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 888888876644332221 2345667778888775 554443
No 204
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.45 E-value=0.00016 Score=64.04 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=48.2
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCceE
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKKF 102 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 102 (794)
-|.|+|..|+|||++|+.+++.. . ..+.+++.. ... .. ...+... .+.-
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~--~----~~~~~~~~~---~~~---~~-----------------~~~~~~~--a~~~ 77 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG--T----PWVSPARVE---YLI---DM-----------------PMELLQK--AEGG 77 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT--S----CEECCSSTT---HHH---HC-----------------HHHHHHH--TTTS
T ss_pred cEEEECCCCccHHHHHHHHHHhC--C----CeEEechhh---CCh---Hh-----------------hhhHHHh--CCCC
Confidence 36799999999999999998732 1 223333221 111 00 0111111 1224
Q ss_pred EEEEeCCCCCCccChhhhHhhccCC-CCCcEEEEEccc
Q 045633 103 FLILDDVWTDDHSKWEPFHNCLMNG-LCGSRILVTTRK 139 (794)
Q Consensus 103 LlvlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtr~ 139 (794)
.+++|+++.........+...+... ..+.++|.||..
T Consensus 78 ~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 78 VLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred eEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 6889999765554445555544433 235678888764
No 205
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.44 E-value=0.0015 Score=68.95 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=81.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHH-HhHcCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYI-HTSIKG 99 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~ 99 (794)
.+-|.|+|+.|+|||++|+.+++ +... ..+.++++.-... . . ...+.....+ ...-..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~--~~~~---~~~~v~~~~l~~~--~------------~--g~~~~~~~~~~~~a~~~ 206 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA--ESNA---TFFNISAASLTSK--Y------------V--GEGEKLVRALFAVAREL 206 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH--HTTC---EEEEECSCCC-----------------------CHHHHHHHHHHHHHS
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcC---cEEEeeHHHhhcc--c------------c--chHHHHHHHHHHHHHhc
Confidence 35678999999999999999987 3222 2334443321110 0 0 0011111112 222233
Q ss_pred ceEEEEEeCCCCCC-------cc----ChhhhHhhccC----CCCCcEEEEEccchhhhh-c-c-cccceEEccCCChHh
Q 045633 100 KKFFLILDDVWTDD-------HS----KWEPFHNCLMN----GLCGSRILVTTRKETVAR-M-M-ESTDVISIKELSEHE 161 (794)
Q Consensus 100 ~~~LlvlDdv~~~~-------~~----~~~~l~~~l~~----~~~gs~iivTtr~~~v~~-~-~-~~~~~~~l~~l~~~e 161 (794)
.+.+|+||+++... .. ....+...+.. ......||.||....... . . .....+.+...+.++
T Consensus 207 ~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~ 286 (389)
T 3vfd_A 207 QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEET 286 (389)
T ss_dssp SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHH
T ss_pred CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHH
Confidence 56799999994320 00 01122222221 112345565665432111 1 1 123468899999999
Q ss_pred HHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCch-HHHHHH
Q 045633 162 CWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPL-AAKTIG 204 (794)
Q Consensus 162 a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 204 (794)
..+++...+........ .+....+++.+.|..- +|..+.
T Consensus 287 r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 287 RLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp HHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999887754333222 2345667777877554 555443
No 206
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0017 Score=68.30 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=82.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-hHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIH-TSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~ 98 (794)
.++=|.+||++|+|||++|+++++ +.... .+.|+.+.-. .... .+.+.....+. ..-.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~--e~~~~---~~~v~~s~l~--------------sk~~--Gese~~ir~~F~~A~~ 272 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAA--TIGAN---FIFSPASGIV--------------DKYI--GESARIIREMFAYAKE 272 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH--HHTCE---EEEEEGGGTC--------------CSSS--SHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehhhhc--------------cccc--hHHHHHHHHHHHHHHh
Confidence 456677999999999999999998 44333 2334433211 1100 11111122222 2223
Q ss_pred CceEEEEEeCCCCCC------cc--------ChhhhHhhccCC--CCCcEEEEEccchhhhhc--cc---ccceEEccCC
Q 045633 99 GKKFFLILDDVWTDD------HS--------KWEPFHNCLMNG--LCGSRILVTTRKETVARM--ME---STDVISIKEL 157 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~------~~--------~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~--~~---~~~~~~l~~l 157 (794)
..+++|++|+++..- .. .+..+...+... ..+..||.||........ +. -+..+.++..
T Consensus 273 ~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lP 352 (437)
T 4b4t_L 273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLP 352 (437)
T ss_dssp SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCC
T ss_pred cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCc
Confidence 568999999996411 00 112233333322 234567777765443221 11 2567888888
Q ss_pred ChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCc
Q 045633 158 SEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLP 197 (794)
Q Consensus 158 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 197 (794)
+.++-.++|+.+........ ..++ ..+++.+.|+-
T Consensus 353 d~~~R~~Il~~~~~~~~~~~-d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 353 NEAGRLEIFKIHTAKVKKTG-EFDF----EAAVKMSDGFN 387 (437)
T ss_dssp CHHHHHHHHHHHHHTSCBCS-CCCH----HHHHHTCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCc-ccCH----HHHHHhCCCCC
Confidence 88888899987765433221 1222 44666676654
No 207
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.40 E-value=1.4e-05 Score=83.77 Aligned_cols=125 Identities=18% Similarity=0.191 Sum_probs=59.2
Q ss_pred CCccEEEEcccCcchhhhhhhhHHHhc-cCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCcc-----Cc
Q 045633 379 KKLRSLILFDVTEDQSAASRGLQGLFD-QLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEEL-----PE 450 (794)
Q Consensus 379 ~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~l-----p~ 450 (794)
++|+.|+++++........ .+...+. ..+.|+.|+|++|.++. ..+..-...+.+|++|+|++ +... ..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~-~l~~~L~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCT-VVAAVLGSGRHALDEVNLASCQLDP--AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHH-HHHHHHSSCSSCEEEEECTTCCCCH--HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHH-HHHHHHhhCCCCceEEEecCCCCCH--HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 4566666666532221111 1222222 22566666666666311 00111122345666666665 3221 11
Q ss_pred cc-cCCCccceec--CcCCC-----ccCcccccccCCceeEeccccccc-----CCCCCCCCCCCCccC
Q 045633 451 TC-CELLNLQTLD--CLSLK-----RLPQGIGKLINLRHLIFDVFGVDY-----VPNGFERLTGLRTLS 506 (794)
Q Consensus 451 ~i-~~L~~L~~L~--~~~l~-----~lp~~~~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~ 506 (794)
.+ ....+|++|+ .+.+. .++..+..+++|++|++++|.+.. ++..+...++|++|+
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEE
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEE
Confidence 11 2344566665 23332 244445667778888887777653 233344455555554
No 208
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.38 E-value=3.4e-05 Score=80.86 Aligned_cols=134 Identities=16% Similarity=0.078 Sum_probs=69.4
Q ss_pred CcceEEEEEeccccc--CcccccCCCCccEEEEcccCcchhhhhhhhHHHh-ccCCccceEEEcccCCCc-cccccCccc
Q 045633 356 EKLRHLTLMLGLRAK--FPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLF-DQLTCLRALKIEDFGLGD-KTIEIPRGL 431 (794)
Q Consensus 356 ~~~r~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~-~~~~lp~~i 431 (794)
..++.|.+..+.+.. ...-...+++|+.|++++|........ .+...+ ...+.|+.|+|++|.++. ....++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~-~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK-DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH-HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH-HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 356666666555432 111112345677777777643221111 122222 245667777777777321 112244455
Q ss_pred cCccCCcEEeccC--CC-----ccCccccCCCccceec--CcCCCc-----cCcccccccCCceeEecccccc
Q 045633 432 ENLIHLRYLQLSS--VE-----ELPETCCELLNLQTLD--CLSLKR-----LPQGIGKLINLRHLIFDVFGVD 490 (794)
Q Consensus 432 ~~l~~L~~L~L~~--~~-----~lp~~i~~L~~L~~L~--~~~l~~-----lp~~~~~L~~L~~L~l~~~~l~ 490 (794)
..+++|++|+|++ +. .++..+....+|++|+ .+.+.. ++..+...++|++|++++|.+.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 6667777777776 22 2344555666677776 334432 2333445567777777666654
No 209
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.34 E-value=0.00054 Score=80.20 Aligned_cols=144 Identities=15% Similarity=0.196 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCcccccc-------CCeEEEEEecCCCCHHHHHHHHHH
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN-------FDKRIWVCVSDPFDEFRIAKAIIE 74 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-------f~~~~~v~~~~~~~~~~~~~~i~~ 74 (794)
+..+++..|... ..+-+.|+|++|+||||+|+.+++ ++... -..+++++++.-..
T Consensus 178 ~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 178 EIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQ--RIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp HHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHH--HHHHTCSCTTSTTCEEEEECC---------------
T ss_pred HHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHH--HHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 445666666543 233467999999999999999987 33211 11244444322100
Q ss_pred HhcCCCCCCCCHHHHHHHHHhHc-C-CceEEEEEeCCCCCC--------ccChhhhHhhccCCCCCcEEEEEccchhh--
Q 045633 75 GLEGSLPNLGELNSLLEYIHTSI-K-GKKFFLILDDVWTDD--------HSKWEPFHNCLMNGLCGSRILVTTRKETV-- 142 (794)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr~~~v-- 142 (794)
+. ....+.+.....+.... . +++.+|++|+++... ......+...+.. + +..+|.+|.....
T Consensus 240 ---g~-~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~-~i~~I~at~~~~~~~ 313 (854)
T 1qvr_A 240 ---GA-KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-G-ELRLIGATTLDEYRE 313 (854)
T ss_dssp ----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-T-CCCEEEEECHHHHHH
T ss_pred ---cC-ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-C-CeEEEEecCchHHhh
Confidence 00 00112222233332222 2 468999999995422 1111223333332 2 3456665554322
Q ss_pred ---hh-cccccceEEccCCChHhHHHHHHHH
Q 045633 143 ---AR-MMESTDVISIKELSEHECWSLFKRF 169 (794)
Q Consensus 143 ---~~-~~~~~~~~~l~~l~~~ea~~Lf~~~ 169 (794)
.. .......+.+++++.++..+++...
T Consensus 314 ~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 314 IEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 11 1122346899999999999998643
No 210
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.31 E-value=0.0086 Score=61.47 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=34.5
Q ss_pred eEEccCCChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCchHHH
Q 045633 151 VISIKELSEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAK 201 (794)
Q Consensus 151 ~~~l~~l~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 201 (794)
.+.+++.+.++-.+++.+.+....... ..+.+..|++.++|.|..+.
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~~~----~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDVEI----EDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHTSTTCHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHhcCCChHHHH
Confidence 578999999999999988764332221 13557889999999997553
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.31 E-value=0.0015 Score=64.53 Aligned_cols=155 Identities=12% Similarity=0.045 Sum_probs=77.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
+-|.|+|+.|+||||+|+.+++ ..... .+.++.+.-.. ... ..........+.......+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~--~~~~~---~~~i~~~~~~~--------------~~~-~~~~~~~~~~~~~a~~~~~ 105 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG--EAKVP---FFTISGSDFVE--------------MFV-GVGASRVRDMFEQAKKAAP 105 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH--HHTCC---EEEECSCSSTT--------------SCC-CCCHHHHHHHHHHHHTTCS
T ss_pred CeEEEECcCCCCHHHHHHHHHH--HcCCC---EEEEeHHHHHH--------------Hhh-hhhHHHHHHHHHHHHHcCC
Confidence 3478999999999999999987 33222 23343222100 000 0111222233333334567
Q ss_pred EEEEEeCCCCCCc--------------cChhhhHhhccC--CCCCcEEEEEccchhhh-hcc----cccceEEccCCChH
Q 045633 102 FFLILDDVWTDDH--------------SKWEPFHNCLMN--GLCGSRILVTTRKETVA-RMM----ESTDVISIKELSEH 160 (794)
Q Consensus 102 ~LlvlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs~iivTtr~~~v~-~~~----~~~~~~~l~~l~~~ 160 (794)
.++++|+++.... .....+...+.. ...+..||.||...... ... .....+.+...+.+
T Consensus 106 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~ 185 (257)
T 1lv7_A 106 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 185 (257)
T ss_dssp EEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHH
T ss_pred eeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHH
Confidence 8999999832110 011222222222 12344566676654321 111 12357788888888
Q ss_pred hHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCC-CchHHH
Q 045633 161 ECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKG-LPLAAK 201 (794)
Q Consensus 161 ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~ 201 (794)
+-.+++..+........ ... ...+++...| .+--|.
T Consensus 186 ~r~~il~~~~~~~~l~~-~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 186 GREQILKVHMRRVPLAP-DID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp HHHHHHHHHHTTSCBCT-TCC----HHHHHHTCTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCc-ccc----HHHHHHHcCCCCHHHHH
Confidence 88888877654322111 111 2335566666 554444
No 212
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.29 E-value=0.00081 Score=67.73 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..++.+.++|++|+|||+||+++++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556788999999999999999998
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.29 E-value=0.00068 Score=73.21 Aligned_cols=159 Identities=12% Similarity=0.094 Sum_probs=82.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
..+-|.|+|++|+|||++|+++++ +... ..+.++++. +. ..... .........+....++
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~--~~~~---~fv~vn~~~----------l~----~~~~g-~~~~~~~~~f~~A~~~ 296 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVAN--ETGA---FFFLINGPE----------IM----SKLAG-ESESNLRKAFEEAEKN 296 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH--HCSS---EEEEEEHHH----------HH----TSCTT-HHHHHHHHHHHHHHHT
T ss_pred CCCcEEEECcCCCCHHHHHHHHHH--HhCC---CEEEEEchH----------hh----hhhcc-hhHHHHHHHHHHHHhc
Confidence 345578999999999999999987 3322 233444321 11 11100 0111122223333345
Q ss_pred ceEEEEEeCCCCCCc-----------cChhhhHhhccC--CCCCcEEEEEccchhh-hhcc----cccceEEccCCChHh
Q 045633 100 KKFFLILDDVWTDDH-----------SKWEPFHNCLMN--GLCGSRILVTTRKETV-ARMM----ESTDVISIKELSEHE 161 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~iivTtr~~~v-~~~~----~~~~~~~l~~l~~~e 161 (794)
++.+|+||+++.... .....+...+.. ...+.+||.||..... ...+ .....+.+...+.++
T Consensus 297 ~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~e 376 (489)
T 3hu3_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (489)
T ss_dssp CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHH
Confidence 678999999832110 111223333332 2234456666665422 1111 223478899999999
Q ss_pred HHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCC-chHHHHH
Q 045633 162 CWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGL-PLAAKTI 203 (794)
Q Consensus 162 a~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 203 (794)
-.+++..++...... ....+ .++++.+.|. +-.|..+
T Consensus 377 R~~IL~~~~~~~~l~-~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 377 RLEILQIHTKNMKLA-DDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp HHHHHHHHTTTSCBC-TTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHhcCCCc-chhhH----HHHHHHccCCcHHHHHHH
Confidence 999998876443221 11122 3455566664 4444433
No 214
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.22 E-value=0.0037 Score=65.78 Aligned_cols=16 Identities=6% Similarity=0.223 Sum_probs=8.6
Q ss_pred HHHhccCCccceEEEc
Q 045633 401 QGLFDQLTCLRALKIE 416 (794)
Q Consensus 401 ~~~~~~~~~L~~L~l~ 416 (794)
..+|.++.+|+.+.+.
T Consensus 62 ~~aF~~C~~L~~I~lp 77 (379)
T 4h09_A 62 EANFNSCYNMTKVTVA 77 (379)
T ss_dssp TTTTTTCTTCCEEEEC
T ss_pred HHHhhCCCCCCEEEeC
Confidence 3345555555555554
No 215
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.0032 Score=66.03 Aligned_cols=152 Identities=16% Similarity=0.075 Sum_probs=80.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHH-HhHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYI-HTSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~ 98 (794)
.++=|.++|++|+|||++|+++++ +.... .+.|+.+. +..... .+.+...+.+ ...-.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~--e~~~~---fi~vs~s~--------------L~sk~v--Gesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVAN--RTDAT---FIRVIGSE--------------LVQKYV--GEGARMVRELFEMART 300 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHH--HHTCE---EEEEEGGG--------------GCCCSS--SHHHHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHh--ccCCC---eEEEEhHH--------------hhcccC--CHHHHHHHHHHHHHHh
Confidence 456677999999999999999998 44333 23343322 111110 1111122222 22223
Q ss_pred CceEEEEEeCCCCCCc------c--------ChhhhHhhccCC--CCCcEEEEEccchhhh-----hcccccceEEccCC
Q 045633 99 GKKFFLILDDVWTDDH------S--------KWEPFHNCLMNG--LCGSRILVTTRKETVA-----RMMESTDVISIKEL 157 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~------~--------~~~~l~~~l~~~--~~gs~iivTtr~~~v~-----~~~~~~~~~~l~~l 157 (794)
..+++|++|+++.... . ....+...+... ..+..||.||...... +.-..+..+.++..
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lP 380 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLP 380 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCC
T ss_pred cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCc
Confidence 5689999999964210 0 011222233222 2234456666543321 11123568889988
Q ss_pred ChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCc
Q 045633 158 SEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLP 197 (794)
Q Consensus 158 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 197 (794)
+.++-.++|+.+....... ..-.+ ..|++.+.|.-
T Consensus 381 d~~~R~~Ilk~~l~~~~l~-~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 381 DLEGRANIFRIHSKSMSVE-RGIRW----ELISRLCPNST 415 (467)
T ss_dssp CHHHHHHHHHHHHTTSCBC-SSCCH----HHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCC-CCCCH----HHHHHHCCCCC
Confidence 9999999998776543221 11222 34566676653
No 216
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0017 Score=68.17 Aligned_cols=151 Identities=16% Similarity=0.130 Sum_probs=75.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHH-HhHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYI-HTSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~ 98 (794)
.++=|.++|++|+|||++|+++++ +.... .+.|+.+.-. .... .+.+..+..+ ...-.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~--~~~~~---~~~v~~~~l~--------------~~~~--Ge~e~~ir~lF~~A~~ 263 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN--STKAA---FIRVNGSEFV--------------HKYL--GEGPRMVRDVFRLARE 263 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH--HHTCE---EEEEEGGGTC--------------CSSC--SHHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--HhCCC---eEEEecchhh--------------cccc--chhHHHHHHHHHHHHH
Confidence 456677999999999999999998 44333 2334433211 1100 1111111111 12223
Q ss_pred CceEEEEEeCCCC--------C-Ccc-----ChhhhHhhccC--CCCCcEEEEEccchhh-----hhcccccceEEccCC
Q 045633 99 GKKFFLILDDVWT--------D-DHS-----KWEPFHNCLMN--GLCGSRILVTTRKETV-----ARMMESTDVISIKEL 157 (794)
Q Consensus 99 ~~~~LlvlDdv~~--------~-~~~-----~~~~l~~~l~~--~~~gs~iivTtr~~~v-----~~~~~~~~~~~l~~l 157 (794)
..+++|++|+++. . ... .+..+...+.. ...+..||.||...+. .+.-..+..++++.+
T Consensus 264 ~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~l 343 (428)
T 4b4t_K 264 NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSL 343 (428)
T ss_dssp TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSS
T ss_pred cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCC
Confidence 5689999999842 0 000 12223333332 2334456667764432 211122456778655
Q ss_pred -ChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCC
Q 045633 158 -SEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGL 196 (794)
Q Consensus 158 -~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 196 (794)
+.++-.++|..+....... ...++ ..+++.+.|.
T Consensus 344 Pd~~~R~~Il~~~~~~~~l~-~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 344 RDRRERRLIFGTIASKMSLA-PEADL----DSLIIRNDSL 378 (428)
T ss_dssp CCHHHHHHHHHHHHHSSCBC-TTCCH----HHHHHHTTTC
T ss_pred CCHHHHHHHHHHHhcCCCCC-cccCH----HHHHHHCCCC
Confidence 4555566777665443221 11223 3455566664
No 217
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.15 E-value=0.0019 Score=69.76 Aligned_cols=138 Identities=16% Similarity=0.189 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCccccccC------C-eEEEEEecCCCCHHHHHHHHHH
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENF------D-KRIWVCVSDPFDEFRIAKAIIE 74 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f------~-~~~~v~~~~~~~~~~~~~~i~~ 74 (794)
+.++++..|... ...-+.|+|++|+|||++|+.+++ ++...+ + .++.++++ .
T Consensus 188 ~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~-------------~ 246 (468)
T 3pxg_A 188 EIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMG-------------T 246 (468)
T ss_dssp HHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC-----------------
T ss_pred HHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCC-------------c
Confidence 345566666543 223456999999999999999887 332211 1 12233332 0
Q ss_pred HhcCCCCCCCCHHHHHHHHHhHcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhh-------ccc
Q 045633 75 GLEGSLPNLGELNSLLEYIHTSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVAR-------MME 147 (794)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-------~~~ 147 (794)
...+. -......+...+. ..++.+|++|.- ......+...+.. ...++|.+|....... ...
T Consensus 247 ~~~g~--~e~~~~~~~~~~~---~~~~~iLfiD~~----~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 247 KYRGE--FEDRLKKVMDEIR---QAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp --------CTTHHHHHHHHH---TCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred cccch--HHHHHHHHHHHHH---hcCCeEEEEeCc----hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 00000 0112222233222 356789999921 1222223333322 2356776666543111 112
Q ss_pred ccceEEccCCChHhHHHHHHHHhh
Q 045633 148 STDVISIKELSEHECWSLFKRFAF 171 (794)
Q Consensus 148 ~~~~~~l~~l~~~ea~~Lf~~~~~ 171 (794)
...++.+.+.+.++..+++...+.
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHH
Confidence 234799999999999999987553
No 218
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0015 Score=68.73 Aligned_cols=151 Identities=15% Similarity=0.076 Sum_probs=79.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHh-HcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHT-SIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~ 98 (794)
.++-|.+||++|+|||.+|+++++ +.... .+.|+.+. +..... .+.+.....+.. .-.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~--e~~~~---f~~v~~s~--------------l~~~~v--Gese~~ir~lF~~A~~ 272 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA--QTNAT---FLKLAAPQ--------------LVQMYI--GEGAKLVRDAFALAKE 272 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH--HHTCE---EEEEEGGG--------------GCSSCS--SHHHHHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH--HhCCC---EEEEehhh--------------hhhccc--chHHHHHHHHHHHHHh
Confidence 456778999999999999999998 44332 23343322 111111 111112222221 112
Q ss_pred CceEEEEEeCCCCC-------Ccc-------ChhhhHhhccCCC--CCcEEEEEccchhhhh-cc----cccceEEccCC
Q 045633 99 GKKFFLILDDVWTD-------DHS-------KWEPFHNCLMNGL--CGSRILVTTRKETVAR-MM----ESTDVISIKEL 157 (794)
Q Consensus 99 ~~~~LlvlDdv~~~-------~~~-------~~~~l~~~l~~~~--~gs~iivTtr~~~v~~-~~----~~~~~~~l~~l 157 (794)
..+++|++|+++.. ... .+..+...+.... .+..||.||....... .+ ..+..+.++..
T Consensus 273 ~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lP 352 (434)
T 4b4t_M 273 KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLP 352 (434)
T ss_dssp HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCC
T ss_pred cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCc
Confidence 45799999998420 000 1122333333322 3445565766543221 11 23567889988
Q ss_pred ChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCC
Q 045633 158 SEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGL 196 (794)
Q Consensus 158 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 196 (794)
+.++-.++|+.+........ .-.+ ..|++.+.|.
T Consensus 353 d~~~R~~Il~~~~~~~~~~~-dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 353 SEDSRAQILQIHSRKMTTDD-DINW----QELARSTDEF 386 (434)
T ss_dssp CHHHHHHHHHHHHHHSCBCS-CCCH----HHHHHHCSSC
T ss_pred CHHHHHHHHHHHhcCCCCCC-cCCH----HHHHHhCCCC
Confidence 99988899977664432211 1122 3456666664
No 219
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0027 Score=65.82 Aligned_cols=151 Identities=16% Similarity=0.121 Sum_probs=78.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHh-HcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHT-SIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~ 98 (794)
-++=|.++|++|.|||.+|+++++ +....| +.++.+. +..... .+.+.....+.. .-+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~--------------l~sk~v--Gesek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSE--------------LIQKYL--GDGPRLCRQIFKVAGE 273 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGG--------------GCCSSS--SHHHHHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHH--------------hhhccC--chHHHHHHHHHHHHHh
Confidence 346677999999999999999998 443332 2333321 111110 111222222221 223
Q ss_pred CceEEEEEeCCCCCCc--------c------ChhhhHhhccC--CCCCcEEEEEccchhhhh-c-c---cccceEEccCC
Q 045633 99 GKKFFLILDDVWTDDH--------S------KWEPFHNCLMN--GLCGSRILVTTRKETVAR-M-M---ESTDVISIKEL 157 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~--------~------~~~~l~~~l~~--~~~gs~iivTtr~~~v~~-~-~---~~~~~~~l~~l 157 (794)
..+++|++|+++.... . .+..+...+.. ...+..||.||...+... . + ..+..+.+...
T Consensus 274 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lP 353 (437)
T 4b4t_I 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP 353 (437)
T ss_dssp TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCC
T ss_pred cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCc
Confidence 4689999999853110 0 11223222222 223445666666544322 1 1 22457888888
Q ss_pred ChHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCC
Q 045633 158 SEHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGL 196 (794)
Q Consensus 158 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 196 (794)
+.++-.++|+.+....... ...++ ..+++.+.|.
T Consensus 354 d~~~R~~Il~~~l~~~~l~-~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 354 DLSTKKKILGIHTSKMNLS-EDVNL----ETLVTTKDDL 387 (437)
T ss_dssp CHHHHHHHHHHHHTTSCBC-SCCCH----HHHHHHCCSC
T ss_pred CHHHHHHHHHHHhcCCCCC-CcCCH----HHHHHhCCCC
Confidence 8888889998776443221 11223 3455566665
No 220
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.12 E-value=0.002 Score=63.85 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=26.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 61 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 61 (794)
..|.|+|..|+|||++|+.+++. ....-...+.++++.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~--~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAA 67 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT--STTTTSCEEEEEGGG
T ss_pred CCEEEECCCCCcHHHHHHHHHHh--cCccCCCeEEEecCC
Confidence 35779999999999999999873 221112345566654
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.12 E-value=0.0029 Score=64.42 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+.|.|+|++|+|||++|+.+++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34677999999999999999987
No 222
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.08 E-value=0.0032 Score=67.35 Aligned_cols=151 Identities=12% Similarity=0.063 Sum_probs=80.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
+-|.|+|++|+|||+||+.++. +.... .+.++.+.-... ... .........+.......+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~--~~~~~---f~~is~~~~~~~--------------~~g-~~~~~~r~lf~~A~~~~p 109 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG--EANVP---FFHISGSDFVEL--------------FVG-VGAARVRDLFAQAKAHAP 109 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH--HHTCC---EEEEEGGGTTTC--------------CTT-HHHHHHHHHHHHHHHTCS
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HcCCC---eeeCCHHHHHHH--------------Hhc-ccHHHHHHHHHHHHhcCC
Confidence 3477999999999999999987 33222 233443321110 000 001112223333334568
Q ss_pred EEEEEeCCCCCCc--------------cChhhhHhhccC--CCCCcEEEEEccchhhhh-c-cc---ccceEEccCCChH
Q 045633 102 FFLILDDVWTDDH--------------SKWEPFHNCLMN--GLCGSRILVTTRKETVAR-M-ME---STDVISIKELSEH 160 (794)
Q Consensus 102 ~LlvlDdv~~~~~--------------~~~~~l~~~l~~--~~~gs~iivTtr~~~v~~-~-~~---~~~~~~l~~l~~~ 160 (794)
.+|++|+++.... .....+...+.. ...+..||.||....... . .. ....+.+...+.+
T Consensus 110 ~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~ 189 (476)
T 2ce7_A 110 CIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDML 189 (476)
T ss_dssp EEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHH
T ss_pred CEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHH
Confidence 9999999944211 012233333321 123556777776654322 1 11 2347888888888
Q ss_pred hHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCc
Q 045633 161 ECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLP 197 (794)
Q Consensus 161 ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 197 (794)
+-.+++..++....... ... ...+++.+.|..
T Consensus 190 ~R~~Il~~~~~~~~l~~-~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 190 GRKKILEIHTRNKPLAE-DVN----LEIIAKRTPGFV 221 (476)
T ss_dssp HHHHHHHHHHTTSCBCT-TCC----HHHHHHTCTTCC
T ss_pred HHHHHHHHHHHhCCCcc-hhh----HHHHHHhcCCCc
Confidence 88888877664432211 111 233677788876
No 223
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.07 E-value=0.002 Score=69.46 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=55.7
Q ss_pred EEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEc----------c----chhh-hhcccccceEEccCCChHhHHHHH
Q 045633 102 FFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTT----------R----KETV-ARMMESTDVISIKELSEHECWSLF 166 (794)
Q Consensus 102 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt----------r----~~~v-~~~~~~~~~~~l~~l~~~ea~~Lf 166 (794)
-++|+|+++.......+.+...+...... .+|+.| . ...+ .........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999776666677777776654434 344343 2 1011 111122345799999999999999
Q ss_pred HHHhhCCCCCCChhHHHHHHHHHHhhc-CCCchHH
Q 045633 167 KRFAFSGRSPTDCEQLEEIGRKIVGKC-KGLPLAA 200 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plal 200 (794)
...+...+.... .+.+..|++.+ +|.|...
T Consensus 376 ~~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a 406 (456)
T 2c9o_A 376 KIRAQTEGINIS----EEALNHLGEIGTKTTLRYS 406 (456)
T ss_dssp HHHHHHHTCCBC----HHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHhCCCCC----HHHHHHHHHHccCCCHHHH
Confidence 876643222111 33455666766 6766533
No 224
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.01 E-value=0.0054 Score=70.99 Aligned_cols=146 Identities=18% Similarity=0.211 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCcccccc------CCeEEE-EEecCCCCHHHHHHHHHH
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN------FDKRIW-VCVSDPFDEFRIAKAIIE 74 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~------f~~~~~-v~~~~~~~~~~~~~~i~~ 74 (794)
+.+++++.|... ...-+.|+|.+|+|||++|+.+++ ++... ....+| ++.+.-
T Consensus 194 ~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~--~l~~~~v~~~~~~~~~~~~~~~~l------------ 253 (758)
T 1r6b_X 194 ELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAW--RIVQGDVPEVMADCTIYSLDIGSL------------ 253 (758)
T ss_dssp HHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHH--HHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred HHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHH--HHHhCCCChhhcCCEEEEEcHHHH------------
Confidence 345666666543 233467999999999999999887 33211 122222 221110
Q ss_pred HhcCCCCCCCCHHHHHHHHHhHc-CCceEEEEEeCCCCCC--------ccChhhhHhhccCCCCCcEEEEEccchhhhhc
Q 045633 75 GLEGSLPNLGELNSLLEYIHTSI-KGKKFFLILDDVWTDD--------HSKWEPFHNCLMNGLCGSRILVTTRKETVARM 145 (794)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 145 (794)
+.+. ......++....+.+.+ +.++.+|++|+++... ..+...+...+.. ..+.++|.+|........
T Consensus 254 -~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~ 330 (758)
T 1r6b_X 254 -LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNI 330 (758)
T ss_dssp --CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCC
T ss_pred -hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhh
Confidence 0011 11223343344444443 3457899999995431 1111112212222 224567777665432211
Q ss_pred -------ccccceEEccCCChHhHHHHHHHHh
Q 045633 146 -------MESTDVISIKELSEHECWSLFKRFA 170 (794)
Q Consensus 146 -------~~~~~~~~l~~l~~~ea~~Lf~~~~ 170 (794)
......+.+.+.+.++..+++....
T Consensus 331 ~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1223468999999999999887644
No 225
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.00 E-value=0.00032 Score=69.86 Aligned_cols=67 Identities=19% Similarity=0.345 Sum_probs=44.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEe--cCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV--SDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
+++.|+|++|+||||||.+++. . .-..+.|++. .+..+. . . .+.++..+.+.+.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~--~---~G~~VlyIs~~~eE~v~~-------------~--~-~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGE--A---LGGKDKYATVRFGEPLSG-------------Y--N-TDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHH--H---HHTTSCCEEEEBSCSSTT-------------C--B-CCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH--h---CCCCEEEEEecchhhhhh-------------h--h-cCHHHHHHHHHHHHhh
Confidence 5678999999999999999886 2 1124567777 222110 0 0 3456666666666655
Q ss_pred ceEEEEEeCCC
Q 045633 100 KKFFLILDDVW 110 (794)
Q Consensus 100 ~~~LlvlDdv~ 110 (794)
.+ +||+|++.
T Consensus 183 ~~-LLVIDsI~ 192 (331)
T 2vhj_A 183 HR-VIVIDSLK 192 (331)
T ss_dssp CS-EEEEECCT
T ss_pred CC-EEEEeccc
Confidence 55 99999994
No 226
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.00 E-value=0.00037 Score=70.63 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=27.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCcccc-ccCCeEEEEEec
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVI-ENFDKRIWVCVS 60 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~~v~~~ 60 (794)
.+.|.|+|+.|+|||+||.++++ ... ..-..++++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEHH
Confidence 35678999999999999999988 443 333346666653
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.99 E-value=0.0013 Score=76.05 Aligned_cols=129 Identities=16% Similarity=0.266 Sum_probs=71.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
...+.++|+.|+|||++|+.+++ .....-...+.++++.-.... .. ........+++ ..
T Consensus 521 ~~~~Ll~Gp~GtGKT~lA~ala~--~l~~~~~~~i~i~~s~~~~~~--------------~~--~~~~l~~~~~~---~~ 579 (758)
T 3pxi_A 521 IGSFIFLGPTGVGKTELARALAE--SIFGDEESMIRIDMSEYMEKH--------------ST--SGGQLTEKVRR---KP 579 (758)
T ss_dssp SEEEEEESCTTSSHHHHHHHHHH--HHHSCTTCEEEEEGGGGCSSC--------------CC--C---CHHHHHH---CS
T ss_pred ceEEEEECCCCCCHHHHHHHHHH--HhcCCCcceEEEechhccccc--------------cc--ccchhhHHHHh---CC
Confidence 44788999999999999999987 332222345566654321110 00 01111122222 23
Q ss_pred eEEEEEeCCCCCCccChhhhHhhccCC-----------CCCcEEEEEccc-----hhh----hhcc------cccceEEc
Q 045633 101 KFFLILDDVWTDDHSKWEPFHNCLMNG-----------LCGSRILVTTRK-----ETV----ARMM------ESTDVISI 154 (794)
Q Consensus 101 ~~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~-----~~v----~~~~------~~~~~~~l 154 (794)
.-+|+||+++.........+...+..+ ..+.+||+||.. ..+ ...+ ..+.++.+
T Consensus 580 ~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~ 659 (758)
T 3pxi_A 580 YSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVF 659 (758)
T ss_dssp SSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEEC
T ss_pred CeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEec
Confidence 348999999665555555555554431 134688888872 110 1111 11358889
Q ss_pred cCCChHhHHHHHHHHh
Q 045633 155 KELSEHECWSLFKRFA 170 (794)
Q Consensus 155 ~~l~~~ea~~Lf~~~~ 170 (794)
.+++.++..+++....
T Consensus 660 ~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 660 HSLEKKHLTEIVSLMS 675 (758)
T ss_dssp C--CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999988888876643
No 228
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.98 E-value=0.0031 Score=60.47 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=50.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcC------------CCCCCCCHHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG------------SLPNLGELNS 88 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~------------~~~~~~~~~~ 88 (794)
-.++.|+|.+|+||||+|+.++. ..-..++|++.....+...+.. +....+. ......+..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35899999999999999998876 1224688888766555544432 3322211 1111122233
Q ss_pred HHHHHHhHcCCceEEEEEeCCC
Q 045633 89 LLEYIHTSIKGKKFFLILDDVW 110 (794)
Q Consensus 89 ~~~~l~~~l~~~~~LlvlDdv~ 110 (794)
....++...+.+.-+||+|...
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcH
Confidence 4455555544457799999873
No 229
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.97 E-value=0.001 Score=73.26 Aligned_cols=139 Identities=16% Similarity=0.173 Sum_probs=65.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKG 99 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 99 (794)
...++.|+|+.|+||||+|+.++. .....| ..++++...+...+........+. ........+... ..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~--~l~~~~---~~i~~~~~~~~~~~~g~~~~~ig~------~~~~~~~~~~~a-~~ 174 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK--SLGRKF---VRISLGGVRDESEIRGHRRTYVGA------MPGRIIQGMKKA-GK 174 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH--HHTCEE---EEECCCC--------------------------CHHHHHHTT-CS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH--hcCCCe---EEEEecccchhhhhhhHHHHHhcc------CchHHHHHHHHh-hc
Confidence 345789999999999999999987 332222 223333222211111111011110 001111222222 22
Q ss_pred ceEEEEEeCCCCCCcc----ChhhhHhhccCCC---------------CCcEEEEEccchhhhh--cccccceEEccCCC
Q 045633 100 KKFFLILDDVWTDDHS----KWEPFHNCLMNGL---------------CGSRILVTTRKETVAR--MMESTDVISIKELS 158 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~iivTtr~~~v~~--~~~~~~~~~l~~l~ 158 (794)
..-++++|+++..... ....+...+.... ....||.||....... ......++.+.+++
T Consensus 175 ~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~ 254 (543)
T 3m6a_A 175 LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYT 254 (543)
T ss_dssp SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCC
T ss_pred cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCC
Confidence 3348889999653322 1233333332211 2346666666533111 11223478999999
Q ss_pred hHhHHHHHHHHh
Q 045633 159 EHECWSLFKRFA 170 (794)
Q Consensus 159 ~~ea~~Lf~~~~ 170 (794)
.++-.+++..+.
T Consensus 255 ~~e~~~Il~~~l 266 (543)
T 3m6a_A 255 EIEKLEIVKDHL 266 (543)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHHHHHHHHHHH
Confidence 999888887654
No 230
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.96 E-value=0.01 Score=62.31 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=63.9
Q ss_pred cCcceEEEEEeccccc-CcccccCCCCccEEEEcccCcchhhhhhhhHHHhccCCccceEEEcccCCCccccccCccccC
Q 045633 355 QEKLRHLTLMLGLRAK-FPVSIFDAKKLRSLILFDVTEDQSAASRGLQGLFDQLTCLRALKIEDFGLGDKTIEIPRGLEN 433 (794)
Q Consensus 355 ~~~~r~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~ 433 (794)
.++++.+.+-.. ... -..++.+|.+|+.+.+... ....-..+|.++ .|+.+.+..+ +..++...-.
T Consensus 45 ~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~------v~~Ig~~aF~~c-~l~~i~~~~~-----l~~I~~~aF~ 111 (379)
T 4h09_A 45 RDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST------VTSIGDGAFADT-KLQSYTGMER-----VKKFGDYVFQ 111 (379)
T ss_dssp GGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT------CCEECTTTTTTC-CCCEEEECTT-----CCEECTTTTT
T ss_pred ccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc------ceEechhhhcCC-CCceEECCce-----eeEeccceec
Confidence 456777766433 222 2446778999999999654 223334567776 4666666432 4455443333
Q ss_pred ccCCcEEeccC-CCccCccccCCCccceec-CcCCCccCc-ccccccCCceeEe
Q 045633 434 LIHLRYLQLSS-VEELPETCCELLNLQTLD-CLSLKRLPQ-GIGKLINLRHLIF 484 (794)
Q Consensus 434 l~~L~~L~L~~-~~~lp~~i~~L~~L~~L~-~~~l~~lp~-~~~~L~~L~~L~l 484 (794)
..+|+.+.+.+ +..+....-.-.+|.... -.+++.+.. .+....+|+.+.+
T Consensus 112 ~~~L~~i~lp~~~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~ 165 (379)
T 4h09_A 112 GTDLDDFEFPGATTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEV 165 (379)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEE
T ss_pred cCCcccccCCCccccccccccccceeeeeeccceeeccccchhccccccccccc
Confidence 34799998877 666654422222343333 333433322 2445556665555
No 231
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.89 E-value=0.0011 Score=67.09 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.|.|+|..|+|||++|+.+.+
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCchHHHHHHHHHH
Confidence 467999999999999999986
No 232
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.88 E-value=0.00064 Score=64.66 Aligned_cols=112 Identities=17% Similarity=0.045 Sum_probs=63.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHhHcC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN--LGELNSLLEYIHTSIK 98 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 98 (794)
-.++.|+|..|+||||+|..++. +...+-..++.+...... . ...+++..++..... .....++.+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 36888999999999999987776 443333345555433211 1 112334444322111 1233455666665554
Q ss_pred Cc-eEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch
Q 045633 99 GK-KFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE 140 (794)
Q Consensus 99 ~~-~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 140 (794)
+. .-+||+|.+..-..++.+.+. .+.+. |..||+|.++.
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~-~L~~~--gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVAN-ILAEN--GFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHH-HHHHT--TCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHHH-HHHhC--CCeEEEEeccc
Confidence 44 459999999443333333332 23332 67899999854
No 233
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.80 E-value=0.00059 Score=63.48 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=39.3
Q ss_pred cccCCCCccEEEEccc-CcchhhhhhhhHHHhccCCccceEEEcccCCCc-cccccCccccCccCCcEEeccC
Q 045633 374 SIFDAKKLRSLILFDV-TEDQSAASRGLQGLFDQLTCLRALKIEDFGLGD-KTIEIPRGLENLIHLRYLQLSS 444 (794)
Q Consensus 374 ~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~lp~~i~~l~~L~~L~L~~ 444 (794)
.+...+.|++|+++++ .... .....+...+...+.|++|+|++|.++. ....+...+...+.|++|+|++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~-~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPV-PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCH-HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHhcCCCCCEEEecCCCCCCH-HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 3445677777777766 3322 2222344445666777777777777431 1112334445556677777765
No 234
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.72 E-value=0.011 Score=58.71 Aligned_cols=127 Identities=14% Similarity=0.093 Sum_probs=67.7
Q ss_pred EEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc-CCceE
Q 045633 24 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI-KGKKF 102 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~ 102 (794)
|.|+|+.|+||||||+.++. .... ..++++...-.+. .....+..+..+.+.. ...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~--~~~~---~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN--ESGL---NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH--HTTC---EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHH--HcCC---CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 88999999999999999987 3222 2444443221110 0000111112222211 23568
Q ss_pred EEEEeCCCCCCc-----------cChhhhHhhccCC--CCCcEEEEEccchhhhhc--c---cccceEEccCCChHhHHH
Q 045633 103 FLILDDVWTDDH-----------SKWEPFHNCLMNG--LCGSRILVTTRKETVARM--M---ESTDVISIKELSEHECWS 164 (794)
Q Consensus 103 LlvlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~--~---~~~~~~~l~~l~~~ea~~ 164 (794)
++++|+++.... .....+...+..+ ....-++.+|....+... . .-+..+.+...+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999954210 0012222223222 123345556665544321 1 235678899999999999
Q ss_pred HHHHHhh
Q 045633 165 LFKRFAF 171 (794)
Q Consensus 165 Lf~~~~~ 171 (794)
+|+....
T Consensus 186 il~~~~~ 192 (274)
T 2x8a_A 186 ILKTITK 192 (274)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9987653
No 235
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.68 E-value=0.0088 Score=67.92 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=81.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
..++-|.++|++|+|||+||+++++ +...+ .+.|+.+. +...... .....+........+
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~--elg~~---~~~v~~~~--------------l~sk~~g-ese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGPE--------------IMSKLAG-ESESNLRKAFEEAEK 295 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHT--TTTCE---EEEEEHHH--------------HHSSCTT-HHHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH--HhCCe---EEEEEhHH--------------hhcccch-HHHHHHHHHHHHHHH
Confidence 3456788999999999999999998 44332 34444321 1111110 111122223333345
Q ss_pred CceEEEEEeCCCCCCc------cC-----hhhhHhhccCC--CCCcEEEEEccchhhh-hcc----cccceEEccCCChH
Q 045633 99 GKKFFLILDDVWTDDH------SK-----WEPFHNCLMNG--LCGSRILVTTRKETVA-RMM----ESTDVISIKELSEH 160 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~------~~-----~~~l~~~l~~~--~~gs~iivTtr~~~v~-~~~----~~~~~~~l~~l~~~ 160 (794)
..+.+|++|+++.... .. ...+...+... ..+.-||.||...+.. ..+ .-...+++...+.+
T Consensus 296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~ 375 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (806)
T ss_dssp SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHH
T ss_pred cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHH
Confidence 6789999999954110 11 11222222211 1233455666544321 111 22567899999999
Q ss_pred hHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCc
Q 045633 161 ECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLP 197 (794)
Q Consensus 161 ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 197 (794)
+-.++|+.+....... ....+ ..+++.+.|.-
T Consensus 376 ~R~~IL~~~l~~~~~~-~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 376 GRLEILQIHTKNMKLA-DDVDL----EQVANETHGHV 407 (806)
T ss_dssp HHHHHHHHTCSSSEEC-TTCCH----HHHHHHCCSCC
T ss_pred HHHHHHHHHhcCCCCC-cccCH----HHHHHhcCCCC
Confidence 9999998765432221 11222 34666666664
No 236
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.66 E-value=0.00033 Score=69.83 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=65.7
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCceE
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKKF 102 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 102 (794)
-|.|+|+.|+|||++|+.+++ +....|- .++.+.-.+ ...+. ............. ..++.
T Consensus 46 ~vll~G~~GtGKT~la~~la~--~~~~~~~---~v~~~~~~~----------~~~~~--~~~~~~~~~~~a~---~~~~~ 105 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG--EAHVPFF---SMGGSSFIE----------MFVGL--GASRVRDLFETAK---KQAPS 105 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH--HHTCCCC---CCCSCTTTT----------SCSSS--CSSSSSTTHHHHH---HSCSC
T ss_pred eEEEECCCCCcHHHHHHHHHH--HhCCCEE---EechHHHHH----------hhcch--HHHHHHHHHHHHH---hcCCe
Confidence 377999999999999999987 3333321 122211000 00000 0011111122222 23567
Q ss_pred EEEEeCCCCCCc---------------cChhhhHhhccCC---CCCcEEEEEccchhhhh-c-c---cccceEEccCCCh
Q 045633 103 FLILDDVWTDDH---------------SKWEPFHNCLMNG---LCGSRILVTTRKETVAR-M-M---ESTDVISIKELSE 159 (794)
Q Consensus 103 LlvlDdv~~~~~---------------~~~~~l~~~l~~~---~~gs~iivTtr~~~v~~-~-~---~~~~~~~l~~l~~ 159 (794)
+|++|+++.... ..+..+...+... .....||.||....... . . .....+.++..+.
T Consensus 106 vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~ 185 (268)
T 2r62_A 106 IIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDF 185 (268)
T ss_dssp EEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCT
T ss_pred EEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCH
Confidence 999999943211 1122333333221 12245666766543211 1 1 1235678888899
Q ss_pred HhHHHHHHHHhh
Q 045633 160 HECWSLFKRFAF 171 (794)
Q Consensus 160 ~ea~~Lf~~~~~ 171 (794)
++..+++...+.
T Consensus 186 ~~r~~il~~~~~ 197 (268)
T 2r62_A 186 NGRVEILKVHIK 197 (268)
T ss_dssp TTHHHHHHHHTS
T ss_pred HHHHHHHHHHHh
Confidence 998888877654
No 237
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.66 E-value=0.0058 Score=70.60 Aligned_cols=137 Identities=16% Similarity=0.192 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhCCcccccc-----C-Ce-EEEEEecCCCCHHHHHHHHHH
Q 045633 2 EKNTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN-----F-DK-RIWVCVSDPFDEFRIAKAIIE 74 (794)
Q Consensus 2 e~~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-----f-~~-~~~v~~~~~~~~~~~~~~i~~ 74 (794)
+.++++..|.... ..-|.++|++|+|||++|+.+++ .+... . +. ++.++.+ .
T Consensus 188 ~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~--~l~~~~~p~~l~~~~~~~~~~g-------------~ 246 (758)
T 3pxi_A 188 EIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMG-------------T 246 (758)
T ss_dssp HHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC-----------------
T ss_pred HHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHH--HHhcCCCChhhcCCeEEEeccc-------------c
Confidence 4456666665432 23367999999999999999887 33111 0 11 1222220 0
Q ss_pred HhcCCCCCCCCHHHHHHHHHhHcCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhhh-------ccc
Q 045633 75 GLEGSLPNLGELNSLLEYIHTSIKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVAR-------MME 147 (794)
Q Consensus 75 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-------~~~ 147 (794)
...+. -......+... ....++.+|++|.- ......+...+. ....++|.||....... ...
T Consensus 247 ~~~G~--~e~~l~~~~~~---~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 247 KYRGE--FEDRLKKVMDE---IRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp --------CTTHHHHHHH---HHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred cccch--HHHHHHHHHHH---HHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 00000 01122222222 23357789999922 122222333332 22456777776544111 011
Q ss_pred ccceEEccCCChHhHHHHHHHHh
Q 045633 148 STDVISIKELSEHECWSLFKRFA 170 (794)
Q Consensus 148 ~~~~~~l~~l~~~ea~~Lf~~~~ 170 (794)
....+.+++.+.++..+++....
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTT
T ss_pred hCcEEEeCCCCHHHHHHHHHHHH
Confidence 23579999999999999998654
No 238
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.63 E-value=0.0065 Score=58.75 Aligned_cols=114 Identities=17% Similarity=0.103 Sum_probs=59.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC--------------------
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-------------------- 81 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-------------------- 81 (794)
.+++|+|+.|+|||||++.++.. ....-..++|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 58999999999999999988852 222223567776543 3333333322 3321110
Q ss_pred ---CCCCHHHHHHHHHhHc---CCceEEEEEeCCCCC---CccChhhhHhhccC--CCCCcEEEEEccch
Q 045633 82 ---NLGELNSLLEYIHTSI---KGKKFFLILDDVWTD---DHSKWEPFHNCLMN--GLCGSRILVTTRKE 140 (794)
Q Consensus 82 ---~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 140 (794)
...+.++....+.+.+ +.++.+||+|..... +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0113444444444433 333459999998421 22223333333322 12367788888764
No 239
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.61 E-value=0.022 Score=58.71 Aligned_cols=156 Identities=9% Similarity=-0.040 Sum_probs=97.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCcccc-ccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhH-c
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVI-ENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTS-I 97 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l 97 (794)
-.++..++|..|.||++.|+.+.+ ... ..|+....+..... .++.++.+.+... +
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~pl 73 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQ--VAAAQGFEEHHTFSIDPN---------------------TDWNAIFSLCQAMSL 73 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHH--HHHHHTCCEEEEEECCTT---------------------CCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHH--HHHhCCCCeeEEEEecCC---------------------CCHHHHHHHhcCcCC
Confidence 356888999999999999988876 222 23433222222222 2233333333221 3
Q ss_pred CCceEEEEEeCCCC-CCccChhhhHhhccCCCCCcEEEEEccc-------hhhhhc-ccccceEEccCCChHhHHHHHHH
Q 045633 98 KGKKFFLILDDVWT-DDHSKWEPFHNCLMNGLCGSRILVTTRK-------ETVARM-MESTDVISIKELSEHECWSLFKR 168 (794)
Q Consensus 98 ~~~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~-~~~~~~~~l~~l~~~ea~~Lf~~ 168 (794)
-+++-++|+|+++. .....++.+...+....+++.+|+++.. ..+... .....+++..+++.++....+.+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 45677889999865 4445667777777665567777776643 123222 23346889999999999988887
Q ss_pred HhhCCCCCCChhHHHHHHHHHHhhcCCCchHHHH
Q 045633 169 FAFSGRSPTDCEQLEEIGRKIVGKCKGLPLAAKT 202 (794)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 202 (794)
.+...+.... .+.+..+++.++|...++..
T Consensus 154 ~~~~~g~~i~----~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 154 RAKQLNLELD----DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHTTCEEC----HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHcCCCCC----HHHHHHHHHHhchHHHHHHH
Confidence 7654443221 34577788999998876653
No 240
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.60 E-value=0.0022 Score=74.28 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=56.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCH---HHHHHHHHhH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGEL---NSLLEYIHTS 96 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~l~~~ 96 (794)
....+.++|+.|+|||++|+.+++ ... ...+.++++....... ...+.+..+..... ..+...+++
T Consensus 487 p~~~~ll~G~~GtGKT~la~~la~--~l~---~~~~~i~~s~~~~~~~-----~~~l~g~~~g~~g~~~~~~l~~~~~~- 555 (758)
T 1r6b_X 487 PVGSFLFAGPTGVGKTEVTVQLSK--ALG---IELLRFDMSEYMERHT-----VSRLIGAPPGYVGFDQGGLLTDAVIK- 555 (758)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH--HHT---CEEEEEEGGGCSSSSC-----CSSSCCCCSCSHHHHHTTHHHHHHHH-
T ss_pred CceEEEEECCCCCcHHHHHHHHHH--Hhc---CCEEEEechhhcchhh-----HhhhcCCCCCCcCccccchHHHHHHh-
Confidence 345788999999999999999987 332 2345556544221100 00111111111111 111222222
Q ss_pred cCCceEEEEEeCCCCCCccChhhhHhhccCCC-----------CCcEEEEEccc
Q 045633 97 IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGL-----------CGSRILVTTRK 139 (794)
Q Consensus 97 l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 139 (794)
....+|+||+++......+..+...+..+. .+..||.||..
T Consensus 556 --~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 556 --HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp --CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred --CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 346789999996655555555555544321 23457777754
No 241
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.51 E-value=0.0014 Score=60.35 Aligned_cols=117 Identities=15% Similarity=-0.035 Sum_probs=64.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcC------C--CCCCC-------C
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEG------S--LPNLG-------E 85 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~------~--~~~~~-------~ 85 (794)
-..|.|++-.|.||||+|-..+- +..++=..|.++...... ...--..+++.+.. . ..... .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 35677777788999999966665 333332346666554421 11111223333310 0 00011 1
Q ss_pred HHHHHHHHHhHcC-CceEEEEEeCCCC---CCccChhhhHhhccCCCCCcEEEEEccch
Q 045633 86 LNSLLEYIHTSIK-GKKFFLILDDVWT---DDHSKWEPFHNCLMNGLCGSRILVTTRKE 140 (794)
Q Consensus 86 ~~~~~~~l~~~l~-~~~~LlvlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 140 (794)
.......+++.+. ++-=|||||++-. -.....+.+...+........||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1223444555554 4456999999821 12344566777776666678899999985
No 242
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.51 E-value=0.005 Score=63.01 Aligned_cols=82 Identities=21% Similarity=0.264 Sum_probs=52.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHHh
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLGELNSLLEYIHT 95 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 95 (794)
-+++.|+|++|+||||||..++. .....=..++|++.....+.. .++.++.... ...+.++....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~--~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 36999999999999999988886 332222357899877666543 3444443211 12345555555554
Q ss_pred HcC-CceEEEEEeCC
Q 045633 96 SIK-GKKFFLILDDV 109 (794)
Q Consensus 96 ~l~-~~~~LlvlDdv 109 (794)
..+ .+.-++|+|.+
T Consensus 134 l~~~~~~dlvVIDSi 148 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSV 148 (356)
T ss_dssp HHHTSCCSEEEEECT
T ss_pred HhhhcCCCeEEehHh
Confidence 442 45568899988
No 243
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.42 E-value=0.0031 Score=73.83 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=55.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC---CCCHHHHHHHHHhHc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN---LGELNSLLEYIHTSI 97 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l 97 (794)
...|.|+|+.|+|||++|+.+++ .....-...+.++++....... ...+.+..+. ..........+.+
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~--~~~~~~~~~i~i~~~~~~~~~~-----~s~l~g~~~~~~G~~~~g~l~~~~~~-- 658 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKHA-----VSRLIGAPPGYVGYEEGGQLTEAVRR-- 658 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHH--HHHSSGGGEEEECTTTCCSSGG-----GGGC--------------CHHHHHHH--
T ss_pred ceEEEEECCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhccchhH-----HHHHcCCCCCCcCccccchHHHHHHh--
Confidence 46788999999999999999987 3311112344555544322100 0111111110 0111112222322
Q ss_pred CCceEEEEEeCCCCCCccChhhhHhhccCCC-----------CCcEEEEEccc
Q 045633 98 KGKKFFLILDDVWTDDHSKWEPFHNCLMNGL-----------CGSRILVTTRK 139 (794)
Q Consensus 98 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 139 (794)
...-+|+||+++.........+...+..+. .+..||+||..
T Consensus 659 -~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 659 -RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp -CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred -CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 234689999996655555566666655431 24447777764
No 244
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.40 E-value=0.00065 Score=66.62 Aligned_cols=64 Identities=25% Similarity=0.142 Sum_probs=48.4
Q ss_pred CCCCccEEEEeecCCCccCCCCchhccccCccEEeecCCCCCCcCCCCCCCC--Ccceeeecccccc
Q 045633 601 APPNIESLNITGFEGRRLIFSSNWTASLDKLKRLDLAFCPRCEIMPPLGKLP--SLEILRIAEMVSV 665 (794)
Q Consensus 601 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~l~~l~~L~--~L~~L~l~~~~~l 665 (794)
.+++|++|+|++|....+...|..+..+++|+.|+|++|. +..+..+..+. +|+.|+|++++-.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcCc
Confidence 4789999999999987753335677799999999999994 44444444444 9999999986633
No 245
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.40 E-value=0.003 Score=61.87 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=33.1
Q ss_pred HHHhccCCccceEEEcccCCCccccccCccccCccCCcEEeccC--CCcc
Q 045633 401 QGLFDQLTCLRALKIEDFGLGDKTIEIPRGLENLIHLRYLQLSS--VEEL 448 (794)
Q Consensus 401 ~~~~~~~~~L~~L~l~~~~~~~~~~~lp~~i~~l~~L~~L~L~~--~~~l 448 (794)
+-+..++++|+.|+|++|.+.. +..+|..+..+++|++|+|++ +..+
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~-l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYR-LDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCC-CGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred HHHHhhCCCCCEEECCCCCCCC-CccchhHHhhCCCCCEEECCCCccCCc
Confidence 3334678889999999998422 334556677888888888887 5544
No 246
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.34 E-value=0.0099 Score=58.36 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=65.8
Q ss_pred EEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc-CCceE
Q 045633 24 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI-KGKKF 102 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~ 102 (794)
|.|+|+.|+||||||+.++. ... ...+.++.. . +.... . .........+.+.. .....
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~--~~~---~~~i~~~~~------~----~~~~~----~--~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG--EAR---VPFITASGS------D----FVEMF----V--GVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH--HTT---CCEEEEEHH------H----HHHSC----T--THHHHHHHHHHHHHTTSSSE
T ss_pred EEEECCCCCCHHHHHHHHHH--HhC---CCEEEeeHH------H----HHHHH----h--hHHHHHHHHHHHHHHhcCCe
Confidence 88999999999999999987 332 223444321 1 11100 0 00111122222222 23568
Q ss_pred EEEEeCCCCCC----------ccC----hhhhHhhccCCC--CCcEEEEEccchhhhhc--c---cccceEEccCCChHh
Q 045633 103 FLILDDVWTDD----------HSK----WEPFHNCLMNGL--CGSRILVTTRKETVARM--M---ESTDVISIKELSEHE 161 (794)
Q Consensus 103 LlvlDdv~~~~----------~~~----~~~l~~~l~~~~--~gs~iivTtr~~~v~~~--~---~~~~~~~l~~l~~~e 161 (794)
++++|+++... ... ...+...+.... ....++.||........ . .....+.++..+.++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 99999983210 001 122333333222 12234455555443221 1 234578899999988
Q ss_pred HHHHHHHHhh
Q 045633 162 CWSLFKRFAF 171 (794)
Q Consensus 162 a~~Lf~~~~~ 171 (794)
-.+++...+.
T Consensus 191 r~~il~~~~~ 200 (254)
T 1ixz_A 191 REQILRIHAR 200 (254)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 8888877653
No 247
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.30 E-value=0.00041 Score=64.57 Aligned_cols=110 Identities=13% Similarity=0.124 Sum_probs=70.2
Q ss_pred hhhhHHHhccCCccceEEEccc-CCCc-cccccCccccCccCCcEEeccC--CC-----ccCccccCCCccceec--CcC
Q 045633 397 SRGLQGLFDQLTCLRALKIEDF-GLGD-KTIEIPRGLENLIHLRYLQLSS--VE-----ELPETCCELLNLQTLD--CLS 465 (794)
Q Consensus 397 ~~~~~~~~~~~~~L~~L~l~~~-~~~~-~~~~lp~~i~~l~~L~~L~L~~--~~-----~lp~~i~~L~~L~~L~--~~~ 465 (794)
...+...+...+.|+.|+|++| .++. ....+...+...++|++|+|++ +. .+...+....+|++|+ .+.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3445667888999999999999 7532 1234556677788999999998 33 2444455556777777 444
Q ss_pred CCc-----cCcccccccCCceeEe--ccccccc-----CCCCCCCCCCCCccC
Q 045633 466 LKR-----LPQGIGKLINLRHLIF--DVFGVDY-----VPNGFERLTGLRTLS 506 (794)
Q Consensus 466 l~~-----lp~~~~~L~~L~~L~l--~~~~l~~-----lp~~i~~l~~L~~L~ 506 (794)
+.. +...+...+.|++|++ ++|.+.. +...+...++|++|+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~ 157 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFG 157 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEe
Confidence 432 3445666677888887 6666653 223334445555554
No 248
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.29 E-value=0.026 Score=60.68 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=77.1
Q ss_pred EEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC----C
Q 045633 24 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK----G 99 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~ 99 (794)
|.|+|+.|+||||||+.++. ... ...+.++.+.-.. . ........+...++ .
T Consensus 67 vLL~GppGtGKTtLaraIa~--~~~---~~~i~i~g~~~~~--------------~-----~~g~~~~~v~~lfq~a~~~ 122 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAG--EAR---VPFITASGSDFVE--------------M-----FVGVGAARVRDLFETAKRH 122 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHH--HTT---CCEEEEEGGGGTS--------------S-----CTTHHHHHHHHHTTTSSSS
T ss_pred EEEECCCCCCHHHHHHHHHH--HhC---CCEEEEehhHHHH--------------h-----hhhhHHHHHHHHHHHHHhc
Confidence 88999999999999999987 332 2234444332100 0 01111222333332 2
Q ss_pred ceEEEEEeCCCCCCc----------c----ChhhhHhhccCCC--CCcEEEEEccchhhhhc--c---cccceEEccCCC
Q 045633 100 KKFFLILDDVWTDDH----------S----KWEPFHNCLMNGL--CGSRILVTTRKETVARM--M---ESTDVISIKELS 158 (794)
Q Consensus 100 ~~~LlvlDdv~~~~~----------~----~~~~l~~~l~~~~--~gs~iivTtr~~~v~~~--~---~~~~~~~l~~l~ 158 (794)
...++++|+++.... . .+..+...+..+. .+..|+.||........ . .....+.+...+
T Consensus 123 ~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd 202 (499)
T 2dhr_A 123 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 202 (499)
T ss_dssp SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCC
T ss_pred CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCC
Confidence 357999999943210 0 1123333333222 23445556665543221 1 224578899999
Q ss_pred hHhHHHHHHHHhhCCCCCCChhHHHHHHHHHHhhcCCCc
Q 045633 159 EHECWSLFKRFAFSGRSPTDCEQLEEIGRKIVGKCKGLP 197 (794)
Q Consensus 159 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 197 (794)
.++-.+++..++....... ... ...+++.+.|..
T Consensus 203 ~~~R~~IL~~~~~~~~l~~-dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 203 VKGREQILRIHARGKPLAE-DVD----LALLAKRTPGFV 236 (499)
T ss_dssp HHHHHHHHHHTTSSSCCCC-SST----THHHHTTSCSCC
T ss_pred HHHHHHHHHHHHhcCCCCh-HHH----HHHHHHhcCCCC
Confidence 9988899887653321111 111 334667777765
No 249
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.20 E-value=0.013 Score=58.00 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=52.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCcccccc--CCeEEEEEecCCCCHHHHHHHHHHHhcCCCCC-----CCCHHHH-HHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIEN--FDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPN-----LGELNSL-LEYI 93 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~--f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~l 93 (794)
+++-|+|++|+||||||.+++. ..... =..++||+........ .+++++..... ..+.++. ...+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 3688999999999999977765 33333 2468899987776653 25666544221 1344554 3333
Q ss_pred HhH--c-CCceEEEEEeCC
Q 045633 94 HTS--I-KGKKFFLILDDV 109 (794)
Q Consensus 94 ~~~--l-~~~~~LlvlDdv 109 (794)
... + ..+.-+||+|-+
T Consensus 102 ~~l~~i~~~~~~lvVIDSI 120 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSL 120 (333)
T ss_dssp HHHHTCCTTCCEEEEEECS
T ss_pred HHHHHhhccCceEEEEecc
Confidence 332 2 456899999998
No 250
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.18 E-value=0.038 Score=57.81 Aligned_cols=23 Identities=39% Similarity=0.388 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...|.++|+.|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999987
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.18 E-value=0.013 Score=60.34 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=52.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHHhH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLGELNSLLEYIHTS 96 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~ 96 (794)
+++.|+|.+|+||||+|..++. .....-..++|++.....+.. .++.++.... ...+.++....+.+.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~--~~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVA--QAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHH--HHHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 4788999999999999988776 222222468999987765543 2344433211 123456666666555
Q ss_pred cC-CceEEEEEeCCC
Q 045633 97 IK-GKKFFLILDDVW 110 (794)
Q Consensus 97 l~-~~~~LlvlDdv~ 110 (794)
.+ .+.-+||+|.+.
T Consensus 148 ~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVA 162 (366)
T ss_dssp HTTTCCSEEEEECTT
T ss_pred HhcCCCCEEEEeChH
Confidence 43 345689999983
No 252
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.17 E-value=0.018 Score=59.12 Aligned_cols=131 Identities=14% Similarity=0.130 Sum_probs=67.6
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc--
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK-- 100 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-- 100 (794)
-|.++|++|+|||++|+.+++ ..... ...+.+.......++ .......... ... .+..+
T Consensus 48 ~vll~G~pGtGKT~la~~la~--~~~~~---~~~i~~~~~~~~~~l----~g~~~~~~~~-~~~---------~~~~g~l 108 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK--TMDLD---FHRIQFTPDLLPSDL----IGTMIYNQHK-GNF---------EVKKGPV 108 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH--HTTCC---EEEEECCTTCCHHHH----HEEEEEETTT-TEE---------EEEECTT
T ss_pred eEEEECCCCCcHHHHHHHHHH--HhCCC---eEEEecCCCCChhhc----CCceeecCCC-Cce---------EeccCcc
Confidence 477999999999999999987 33322 233444322222221 1110000000 000 00001
Q ss_pred -eEEEEEeCCCCCCccChhhhHhhccCC-----------CCCcEEEEEccchh------hhh-cccc-cceEEccCCChH
Q 045633 101 -KFFLILDDVWTDDHSKWEPFHNCLMNG-----------LCGSRILVTTRKET------VAR-MMES-TDVISIKELSEH 160 (794)
Q Consensus 101 -~~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~~~------v~~-~~~~-~~~~~l~~l~~~ 160 (794)
..++++|+++.........+...+... .....||.|+.... +.. .... ...+.+.+.+.+
T Consensus 109 ~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~ 188 (331)
T 2r44_A 109 FSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKE 188 (331)
T ss_dssp CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHH
T ss_pred cccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHH
Confidence 258999999665444444444433321 22345555555221 111 1112 225889999999
Q ss_pred hHHHHHHHHhhC
Q 045633 161 ECWSLFKRFAFS 172 (794)
Q Consensus 161 ea~~Lf~~~~~~ 172 (794)
+-.+++.+....
T Consensus 189 ~~~~il~~~~~~ 200 (331)
T 2r44_A 189 SELEVMRRVSNM 200 (331)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHhcccc
Confidence 999999887643
No 253
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.16 E-value=0.0087 Score=58.30 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=35.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccc----cCCeEEEEEecCCCCHHHHHHHHHHHh
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGL 76 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l 76 (794)
.+++|+|++|+||||||+.++....... .-..++|++.........+ .++++.+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~ 82 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERY 82 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHc
Confidence 5899999999999999988876211111 1357889987665444433 2334444
No 254
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.13 E-value=0.017 Score=59.33 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=37.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccc----cCCeEEEEEecCCCCHHHHHHHHHHHh
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGL 76 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l 76 (794)
.-.++.|+|.+|+||||+|..++....... .-..++|++....++...+. +++..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHc
Confidence 447899999999999999988775211111 22468899988766665543 334444
No 255
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.95 E-value=0.013 Score=59.87 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=36.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccc----cCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIE----NFDKRIWVCVSDPFDEFRIAKAIIEGLE 77 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 77 (794)
+++.|+|.+|+||||+|..++....... .-..++|++....++...+. ++++.++
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g 166 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALG 166 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhC
Confidence 5889999999999999988775211111 02468899888766665544 3344443
No 256
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.92 E-value=0.012 Score=60.02 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=37.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccc---------cC-----CeEEEEEecCCCCHHHHHHHHHHHhc
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIE---------NF-----DKRIWVCVSDPFDEFRIAKAIIEGLE 77 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~---------~f-----~~~~~v~~~~~~~~~~~~~~i~~~l~ 77 (794)
.-+++.|+|.+|+||||+|..++....... .. ..++|++....++...+.+ +++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 346899999999999999987775211111 11 3688999887766665543 344443
No 257
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.90 E-value=0.03 Score=55.75 Aligned_cols=127 Identities=14% Similarity=0.090 Sum_probs=65.3
Q ss_pred EEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhH-cCCceE
Q 045633 24 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTS-IKGKKF 102 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~ 102 (794)
|.|+|+.|+||||||+.++. ... ...+.++.. . +..... .........+.+. -.....
T Consensus 76 vll~Gp~GtGKTtl~~~i~~--~~~---~~~i~~~~~------~----~~~~~~------~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG--EAR---VPFITASGS------D----FVEMFV------GVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH--HTT---CCEEEEEHH------H----HHHSTT------THHHHHHHHHHHHHHTSCSE
T ss_pred EEEECCCcChHHHHHHHHHH--HcC---CCEEEecHH------H----HHHHHh------hHHHHHHHHHHHHHHhcCCc
Confidence 88999999999999999987 332 233444321 1 111000 0011111122222 223468
Q ss_pred EEEEeCCCCC--C--------cc----ChhhhHhhccCCCC--CcEEEEEccchhhhh-----cccccceEEccCCChHh
Q 045633 103 FLILDDVWTD--D--------HS----KWEPFHNCLMNGLC--GSRILVTTRKETVAR-----MMESTDVISIKELSEHE 161 (794)
Q Consensus 103 LlvlDdv~~~--~--------~~----~~~~l~~~l~~~~~--gs~iivTtr~~~v~~-----~~~~~~~~~l~~l~~~e 161 (794)
++|+|+++.. . .. ....+...+..... ...++.||....+.. .......+.++..+.++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 214 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHH
Confidence 9999998320 0 00 11223323322221 223444555543322 11234578899999988
Q ss_pred HHHHHHHHhh
Q 045633 162 CWSLFKRFAF 171 (794)
Q Consensus 162 a~~Lf~~~~~ 171 (794)
-.+++...+.
T Consensus 215 r~~il~~~~~ 224 (278)
T 1iy2_A 215 REQILRIHAR 224 (278)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 8888887653
No 258
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.88 E-value=0.015 Score=58.30 Aligned_cols=86 Identities=16% Similarity=0.103 Sum_probs=46.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccc-cCCeEEEEEecC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIE-NFDKRIWVCVSD-PFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI 97 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~-~f~~~~~v~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 97 (794)
..++|+|+|.+|+||||++..++. .... .=..+.+++... .....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~--~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA--ISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h
Confidence 457999999999999999988876 3321 112466666543 2223333333333333222111233333333332 3
Q ss_pred CCceEEEEEeCC
Q 045633 98 KGKKFFLILDDV 109 (794)
Q Consensus 98 ~~~~~LlvlDdv 109 (794)
.+.=++|+|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 44568889954
No 259
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.84 E-value=0.02 Score=58.77 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=51.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHHh
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLGELNSLLEYIHT 95 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 95 (794)
-+++.|+|.+|+||||||.+++. .....=..++|++.....+.. .++.++.... ...+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 35899999999999999988875 222222468899987655542 2344442211 11245555555554
Q ss_pred HcC-CceEEEEEeCC
Q 045633 96 SIK-GKKFFLILDDV 109 (794)
Q Consensus 96 ~l~-~~~~LlvlDdv 109 (794)
..+ .+.-+||+|.+
T Consensus 134 l~~~~~~~lIVIDsl 148 (349)
T 2zr9_A 134 LVRSGALDIIVIDSV 148 (349)
T ss_dssp HHTTTCCSEEEEECG
T ss_pred HHhcCCCCEEEEcCh
Confidence 443 34678999988
No 260
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.81 E-value=0.033 Score=55.87 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=48.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC-CHHHHHHHHHHHhcCCC---CCCCCHHHH-HHHH
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGSL---PNLGELNSL-LEYI 93 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~-~~~l 93 (794)
...++|+|+|++|+||||++..++. .....-..+.+++..... ...+.+...++..+... ....+...+ ...+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~--~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK--MFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH--HHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4568999999999999999988886 333222345666654321 11122233444433211 111222222 2334
Q ss_pred HhHcCCceEEEEEeCC
Q 045633 94 HTSIKGKKFFLILDDV 109 (794)
Q Consensus 94 ~~~l~~~~~LlvlDdv 109 (794)
.+.+..+.-++|+|-.
T Consensus 180 ~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHTTCSEEEEEEC
T ss_pred HHHHhcCCCEEEEECC
Confidence 4444445557888976
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.74 E-value=0.012 Score=60.35 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=49.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHHh
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLGELNSLLEYIHT 95 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 95 (794)
-+++.|+|.+|+||||||..++. .....-..++|++.....+.. .+..++.... .....++....+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~--~~~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 35889999999999999988776 222222468899987766533 2344433211 11234444444433
Q ss_pred Hc-CCceEEEEEeCC
Q 045633 96 SI-KGKKFFLILDDV 109 (794)
Q Consensus 96 ~l-~~~~~LlvlDdv 109 (794)
.. ..+.-+||+|.+
T Consensus 136 l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 136 LARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHTCCSEEEEECG
T ss_pred HHhccCCCEEEEcCH
Confidence 32 234558999987
No 262
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.73 E-value=0.0017 Score=59.99 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=18.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+++.|+|+.|+||||+|..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999966655
No 263
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.68 E-value=0.021 Score=57.49 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=26.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCC-eEEEEEec
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFD-KRIWVCVS 60 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~-~~~~v~~~ 60 (794)
.+++|.|..|+|||||++.++.. ....-. .++|+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc
Confidence 58999999999999999988763 222222 46677653
No 264
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.60 E-value=0.09 Score=50.32 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.+++|+|+.|+|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999873
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.54 E-value=0.058 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.+++|+|+.|+|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 266
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.47 E-value=0.071 Score=56.00 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 578999999999999999987775
No 267
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.47 E-value=0.0084 Score=56.77 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..-.+|+|+|+.|+|||||++.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998876
No 268
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.46 E-value=0.057 Score=58.10 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
-|.|+|++|+|||++|+.+++
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGG
T ss_pred eeEeecCchHHHHHHHHHHHH
Confidence 477999999999999999987
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.33 E-value=0.0059 Score=56.17 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999987
No 270
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.24 E-value=0.01 Score=55.21 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
-.+|+|+|+.|+||||+++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 271
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.22 E-value=0.019 Score=53.92 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 4 NTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 4 ~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+++.+.+.... .....+|+|.|..|+||||+++.+..
T Consensus 8 ~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 8 DFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555554431 23568999999999999999998876
No 272
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.21 E-value=0.028 Score=59.17 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=32.0
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccC-CeEEEEEecCCC-CHHHHHHHHH
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDPF-DEFRIAKAII 73 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~v~~~~~~-~~~~~~~~i~ 73 (794)
.++|+|..|+||||||..+.. .....+ +.++++.+++.. ...++..++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~--~~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIH--NIAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHH--HHHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHh--hhhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 578999999999999998877 333333 445666666543 2334444443
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.14 E-value=0.01 Score=54.45 Aligned_cols=19 Identities=37% Similarity=0.698 Sum_probs=18.2
Q ss_pred EEEEEecCCCcHHHHHHHH
Q 045633 23 IISLVGMGGIGKTTLAQFA 41 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~ 41 (794)
+|+|.|+.|+||||+|+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999988
No 274
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.11 E-value=0.069 Score=56.10 Aligned_cols=40 Identities=33% Similarity=0.121 Sum_probs=28.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEec
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS 60 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~ 60 (794)
...++|.++|++|+||||++..++. .....=..+..++..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~--~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAY--FYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHH--HHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEecC
Confidence 3578999999999999999988876 232222245555554
No 275
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.06 E-value=0.014 Score=58.17 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.0
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 18 QNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 18 ~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.....+|+|.|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999988876
No 276
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.04 E-value=0.046 Score=56.19 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=30.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccC----CeEEEEEecCCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENF----DKRIWVCVSDPF 63 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f----~~~~~v~~~~~~ 63 (794)
.=+++.|+|+.|+|||||++.++......... ..++|++....+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~ 177 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF 177 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC
Confidence 44799999999999999998887621111111 245899876554
No 277
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.03 E-value=0.12 Score=54.57 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=29.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCcccccc-CCeEEEEEecC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIEN-FDKRIWVCVSD 61 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~~v~~~~ 61 (794)
...++|.++|.+|+||||+|..++. ..... =..|..|++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~--~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK--FLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH--HHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHHhcCCeEEEEecCC
Confidence 4578999999999999999988776 33332 23466666653
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.00 E-value=0.011 Score=54.31 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 279
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.00 E-value=0.0064 Score=62.53 Aligned_cols=111 Identities=13% Similarity=0.153 Sum_probs=59.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
.+|+|+|+.|+||||+.+.+.. .+.......++ .+.+...... ... ...-.+.....+.......+.+.|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~-t~ed~~e~~~--~~~-~~~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHIL-TIEDPIEFVH--ESK-KCLVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEE-EEESSCCSCC--CCS-SSEEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEE-EccCcHHhhh--hcc-ccceeeeeeccccCCHHHHHHHHhhhCc
Confidence 5899999999999999998876 33322222222 2222111000 000 0000000000111233457888888888
Q ss_pred EEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhhh
Q 045633 102 FFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETVA 143 (794)
Q Consensus 102 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 143 (794)
=+|++|+.- +.+.++.+..... .|.-||+|+-.....
T Consensus 198 dvillDEp~--d~e~~~~~~~~~~---~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 198 DIILVGEMR--DLETIRLALTAAE---TGHLVFGTLHTTSAA 234 (356)
T ss_dssp SEEEESCCC--SHHHHHHHHHHHH---TTCEEEEEESCSSHH
T ss_pred CEEecCCCC--CHHHHHHHHHHHh---cCCEEEEEEccChHH
Confidence 899999994 3444444443322 255688888865443
No 280
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.97 E-value=0.011 Score=54.03 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999886
No 281
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.96 E-value=0.021 Score=57.60 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=29.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 61 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 61 (794)
++.|||+|+|-||+||||.|-.++. -....=..|.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCC
Confidence 5789999999999999999966554 2222223477778763
No 282
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.89 E-value=0.056 Score=56.36 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=35.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCcccc----ccCCeEEEEEecCCCCHHHHHHHHHHHhc
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVI----ENFDKRIWVCVSDPFDEFRIAKAIIEGLE 77 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~i~~~l~ 77 (794)
.++.|+|+.|+|||||+..++-..... ..-..++|++....+....+ +.+++.++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 589999999999999998654211111 12346889987665554433 33555554
No 283
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.84 E-value=0.023 Score=56.68 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=27.3
Q ss_pred HHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 5 TLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 5 ~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+++..++.... ......+|.|.|++|+||||+|+.+..
T Consensus 18 ~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 18 DNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44444443322 334567899999999999999999876
No 284
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.84 E-value=0.0097 Score=55.10 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+.|.|+|+.|+||||+|+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999986
No 285
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.83 E-value=0.013 Score=55.03 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.++|+|+|+.|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 286
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.81 E-value=0.013 Score=53.99 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998876
No 287
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.80 E-value=0.017 Score=54.18 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 288
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.78 E-value=0.012 Score=53.70 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|+|+|+.|+||||+|+.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999886
No 289
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.74 E-value=0.012 Score=53.47 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..++|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999886
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.74 E-value=0.023 Score=52.93 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 291
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.64 E-value=0.023 Score=53.72 Aligned_cols=25 Identities=36% Similarity=0.419 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....+|+|+|+.|+||||+|+.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999886
No 292
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.63 E-value=0.076 Score=53.78 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=34.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC-CCCHHHHHHHHHHHhc
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD-PFDEFRIAKAIIEGLE 77 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~~~~i~~~l~ 77 (794)
....+|+|+|+.|+||||+++.++. .....-..+.++.... .....+.++...+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag--~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN--WLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 4568999999999999999998886 2322222344554432 2233344444455544
No 293
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.61 E-value=0.02 Score=58.20 Aligned_cols=40 Identities=23% Similarity=0.112 Sum_probs=27.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccC-C-eEEEEEecCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENF-D-KRIWVCVSDP 62 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f-~-~~~~v~~~~~ 62 (794)
=+.++|+|..|+|||||++.+.+ .+.... + .++++-+++.
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~~I~~lIGER 215 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCVLMVLLIDER 215 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSEEEEEEESSC
T ss_pred CcEEEEecCCCCChhHHHHHHHH--HHhhcCCCeeEEEEEecCC
Confidence 35788999999999999988876 332222 2 2445666643
No 294
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.60 E-value=0.18 Score=50.90 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=35.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEG 75 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~ 75 (794)
-.++.|.|.+|+||||+|..++.+ ...+-..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~--~a~~g~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH--HHTTTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEECC--CCHHHHHHHHHHH
Confidence 357889999999999999887753 22122578888765 4566666666554
No 295
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.59 E-value=0.019 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 296
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.58 E-value=0.019 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 297
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.57 E-value=0.019 Score=54.01 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999986
No 298
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.56 E-value=0.08 Score=55.49 Aligned_cols=39 Identities=26% Similarity=0.174 Sum_probs=27.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEec
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS 60 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~ 60 (794)
..++|+|+|.+|+||||++..++. .....-..+..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~--~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEeecc
Confidence 568999999999999999988876 333222345555543
No 299
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.54 E-value=0.02 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|.|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999974
No 300
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.54 E-value=0.029 Score=51.85 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.-.+|.|.|+.|+||||+|+.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 301
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.54 E-value=0.019 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.665 Sum_probs=19.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
-.+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997553
No 302
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.52 E-value=0.072 Score=53.19 Aligned_cols=87 Identities=18% Similarity=0.042 Sum_probs=48.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC-CHHHHHHHHHHHhcCC---CCCCCCHHHHHHHHHhH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEGLEGS---LPNLGELNSLLEYIHTS 96 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~ 96 (794)
.++|+++|.+|+||||++..++. .....-..+.+++..... ...+.++...+..+.. .....+..+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~--~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY--FYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH--HHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 68999999999999999988876 333222346667654332 2233333444444332 11112344443333333
Q ss_pred cC-CceEEEEEeCC
Q 045633 97 IK-GKKFFLILDDV 109 (794)
Q Consensus 97 l~-~~~~LlvlDdv 109 (794)
++ .+-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 33 33347888876
No 303
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.49 E-value=0.044 Score=63.27 Aligned_cols=132 Identities=13% Similarity=0.073 Sum_probs=68.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHH-HHHHHhHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSL-LEYIHTSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~ 98 (794)
..+.|.|+|+.|+||||||+.++. ..... .+.++... +..... ...... ...+.....
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~--~l~~~---~i~v~~~~--------------l~~~~~--g~~~~~l~~vf~~a~~ 295 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVAN--ETGAF---FFLINGPE--------------IMSKLA--GESESNLRKAFEEAEK 295 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHH--TTTCE---EEEEEHHH--------------HSSSST--THHHHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH--HcCCc---EEEEEchH--------------hhhhhh--hhHHHHHHHHHHHHHh
Confidence 345688999999999999999987 33222 23443211 111100 111111 122222223
Q ss_pred CceEEEEEeCCCCCCc------c-----ChhhhHhhccCC--CCCcEEEEEccchhhh-hcc----cccceEEccCCChH
Q 045633 99 GKKFFLILDDVWTDDH------S-----KWEPFHNCLMNG--LCGSRILVTTRKETVA-RMM----ESTDVISIKELSEH 160 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~------~-----~~~~l~~~l~~~--~~gs~iivTtr~~~v~-~~~----~~~~~~~l~~l~~~ 160 (794)
....++++|+++.... . ....+...+... ..+..+|.||...... ..+ .....+.+...+.+
T Consensus 296 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~ 375 (806)
T 1ypw_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (806)
T ss_dssp HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHH
T ss_pred cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHH
Confidence 4578999999843110 0 012222222221 2234566666654221 111 12346778888889
Q ss_pred hHHHHHHHHhhC
Q 045633 161 ECWSLFKRFAFS 172 (794)
Q Consensus 161 ea~~Lf~~~~~~ 172 (794)
+-.+++...+..
T Consensus 376 ~r~~il~~~~~~ 387 (806)
T 1ypw_A 376 GRLEILQIHTKN 387 (806)
T ss_dssp HHHHHHHHTTTT
T ss_pred HHHHHHHHHHhc
Confidence 988998876543
No 304
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.47 E-value=0.023 Score=51.04 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..++++|.|..|+||||++.++..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998887
No 305
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.46 E-value=0.0093 Score=54.84 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
|.|.|.|+.|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999998876
No 306
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.45 E-value=0.024 Score=53.38 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....+|+|.|+.|+||||+|+.+++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999876
No 307
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.43 E-value=0.091 Score=53.25 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=35.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHh
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGL 76 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l 76 (794)
.++.|.|.+|+||||+|..++.+ ....=..|+|++.. .+..++...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 57889999999999999888763 22222457787764 45666666665543
No 308
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.42 E-value=0.023 Score=53.87 Aligned_cols=24 Identities=38% Similarity=0.346 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 309
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.41 E-value=0.022 Score=53.73 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 310
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.37 E-value=0.015 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++++|.|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999886
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.35 E-value=0.021 Score=53.60 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.-.+|+|.|+.|+||||+|+.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 312
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.34 E-value=0.027 Score=55.16 Aligned_cols=39 Identities=23% Similarity=0.205 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCccCCCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 4 NTLKSKLLCESNEQQNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 4 ~~i~~~l~~~~~~~~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++++..+..... ......+|.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 16 ARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345455554432 345568899999999999999999876
No 313
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.33 E-value=0.077 Score=53.02 Aligned_cols=39 Identities=26% Similarity=0.174 Sum_probs=28.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEec
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS 60 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~ 60 (794)
..++++|+|.+|+||||++..++. .....-..+.+++..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~--~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEecCC
Confidence 467999999999999999988886 333222345566553
No 314
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.33 E-value=0.021 Score=53.78 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999998876
No 315
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.30 E-value=0.018 Score=54.16 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 316
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.30 E-value=0.023 Score=52.06 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.++|+|+.|+|||||++.++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998876
No 317
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.28 E-value=0.041 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|+|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 318
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.28 E-value=0.023 Score=55.52 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++|.|.|+.|+||||+|+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 319
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.26 E-value=0.02 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 320
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.25 E-value=0.02 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 321
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.25 E-value=0.023 Score=53.47 Aligned_cols=21 Identities=43% Similarity=0.485 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|+|+|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999875
No 322
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.23 E-value=0.028 Score=53.08 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 18 QNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 18 ~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
-.+.++|.|.|++|+||||.|+.+++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999886
No 323
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.21 E-value=0.022 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|+|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998876
No 324
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.21 E-value=0.048 Score=50.85 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 325
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.18 E-value=0.023 Score=53.66 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.-++|+|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999986
No 326
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.15 E-value=0.024 Score=55.51 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998876
No 327
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.15 E-value=0.022 Score=52.78 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.-.+|+|+|+.|+||||+|+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 328
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.15 E-value=0.018 Score=52.93 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+.|.|+|+.|+||||+|+.+.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345788999999999999999886
No 329
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.10 E-value=0.022 Score=53.15 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 330
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.10 E-value=0.32 Score=52.26 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=26.8
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEec
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS 60 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~ 60 (794)
...++|.|+|.+|+||||++.+++. .....=..+..|+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~--~l~~~G~kVllVd~D 138 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY--YYQRKGWKTCLICAD 138 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEecc
Confidence 4678999999999999999988875 222221235556553
No 331
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.07 E-value=0.022 Score=52.13 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.|.|.|+.|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 332
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.07 E-value=0.056 Score=50.27 Aligned_cols=21 Identities=43% Similarity=0.687 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 333
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.06 E-value=0.087 Score=50.50 Aligned_cols=43 Identities=23% Similarity=0.218 Sum_probs=29.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccc---cc-cCCeEEEEEecCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDV---IE-NFDKRIWVCVSDP 62 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~---~~-~f~~~~~v~~~~~ 62 (794)
.=.+++|+|+.|+|||||++.++..... .. .-..++|++....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 3369999999999999999988651111 01 1345788876543
No 334
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.02 E-value=0.026 Score=54.17 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 335
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.97 E-value=0.047 Score=54.92 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.0
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 18 QNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 18 ~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...+.+|+|.|+.|+||||+|+.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999988865
No 336
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.96 E-value=0.035 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|+|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 337
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.94 E-value=0.028 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|+|+|+.|+||||+++.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 338
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.93 E-value=0.025 Score=53.20 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 588999999999999999886
No 339
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.93 E-value=0.034 Score=55.24 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHh
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAY 42 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~ 42 (794)
....+|+|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999999887
No 340
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.93 E-value=0.02 Score=52.93 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 341
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.92 E-value=0.034 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 342
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.92 E-value=0.11 Score=58.95 Aligned_cols=131 Identities=14% Similarity=0.077 Sum_probs=63.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCc
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGK 100 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 100 (794)
.+-|.++|++|.|||.+|+++++ +... -++.++. . +++. .... .....+.......-+..
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~--e~~~-----~f~~v~~----~----~l~s----~~vG-ese~~vr~lF~~Ar~~~ 570 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIAN--ECQA-----NFISIKG----P----ELLT----MWFG-ESEANVREIFDKARQAA 570 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHH--TTTC-----EEEECCH----H----HHHT----TTCS-SCHHHHHHHHHHHHTTC
T ss_pred CceEEEecCCCCCchHHHHHHHH--HhCC-----ceEEecc----c----hhhc----cccc-hHHHHHHHHHHHHHHcC
Confidence 44577999999999999999998 3322 2333321 1 1111 1111 11222223333333557
Q ss_pred eEEEEEeCCCCCC----------cc----ChhhhHhhccCCC--CCcEEEEEccchhh-----hhcccccceEEccCCCh
Q 045633 101 KFFLILDDVWTDD----------HS----KWEPFHNCLMNGL--CGSRILVTTRKETV-----ARMMESTDVISIKELSE 159 (794)
Q Consensus 101 ~~LlvlDdv~~~~----------~~----~~~~l~~~l~~~~--~gs~iivTtr~~~v-----~~~~~~~~~~~l~~l~~ 159 (794)
+.+|++|+++.-- .. ....+...+.... .+.-||-||..... .+.-.-+..+.+...+.
T Consensus 571 P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~ 650 (806)
T 3cf2_A 571 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650 (806)
T ss_dssp SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----
T ss_pred CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCH
Confidence 8999999985310 00 1223333333322 22223334443321 11112356778887777
Q ss_pred HhHHHHHHHHhh
Q 045633 160 HECWSLFKRFAF 171 (794)
Q Consensus 160 ~ea~~Lf~~~~~ 171 (794)
++-.++|+.+..
T Consensus 651 ~~R~~il~~~l~ 662 (806)
T 3cf2_A 651 KSRVAILKANLR 662 (806)
T ss_dssp CHHHHTTTTTSS
T ss_pred HHHHHHHHHHhc
Confidence 777788876653
No 343
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.91 E-value=0.032 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..|+|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 344
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.89 E-value=0.024 Score=53.42 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..++|+|.|+.|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999999999876
No 345
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.87 E-value=0.022 Score=53.30 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998875
No 346
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.87 E-value=0.032 Score=54.80 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 347
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.85 E-value=0.02 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++|+|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 348
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.85 E-value=0.093 Score=55.68 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=29.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 64 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~ 64 (794)
..-.+|+|+|..|+||||+++.++. .+.. ..+.+++.......
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg--ll~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR--QFEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH--HHHH-TTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH--Hhhh-cCCeEEEecCcccc
Confidence 3567999999999999999999886 3322 23455554444333
No 349
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.83 E-value=0.036 Score=49.49 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
=.+++|.|+.|+|||||++.++.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998886
No 350
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.83 E-value=0.028 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|+|.|+.|+||||+|+.+.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999886
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.82 E-value=0.029 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=21.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...+|+|.|+.|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999876
No 352
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.82 E-value=0.028 Score=50.96 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 353
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.80 E-value=0.055 Score=54.68 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=30.5
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC
Q 045633 18 QNAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF 63 (794)
Q Consensus 18 ~~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~ 63 (794)
....++|+|+|-||+||||+|..++. .....=..|+-|++....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~--~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHH--HHHHCCCeEEEEeCCCCC
Confidence 34678999999999999999977766 333222357778876443
No 354
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.79 E-value=0.029 Score=51.92 Aligned_cols=24 Identities=17% Similarity=0.491 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.-++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999998875
No 355
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.79 E-value=0.036 Score=53.95 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.-.+|+|.|+.|+||||||+.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998876
No 356
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.76 E-value=0.064 Score=49.90 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=16.6
Q ss_pred EEEEEecCCCcHHHHHHHH
Q 045633 23 IISLVGMGGIGKTTLAQFA 41 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~ 41 (794)
++.|+|.+|.|||++|...
T Consensus 7 i~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 5679999999999999664
No 357
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.75 E-value=0.029 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|+|+|+.|+||||+++.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 358
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.69 E-value=0.037 Score=55.73 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....+|+|.|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4568999999999999999998876
No 359
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.57 E-value=0.035 Score=54.22 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|+|+|+.|+||||+++.++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999985
No 360
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.57 E-value=0.036 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998876
No 361
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.54 E-value=0.061 Score=54.35 Aligned_cols=40 Identities=33% Similarity=0.264 Sum_probs=28.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEec
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS 60 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~ 60 (794)
...++|+|+|.+|+||||++..++. .....-..+.+++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~--~l~~~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN--YYAELGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCC
Confidence 4678999999999999999988876 333322345566543
No 362
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.53 E-value=0.14 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.5
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....+|.|+|+.|+||||+|+.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999886
No 363
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.50 E-value=0.045 Score=54.85 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...+|+|+|+.|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999998886
No 364
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.49 E-value=0.065 Score=54.25 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=21.9
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+....|.|+|+.|+||||+|+.++.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3566788999999999999998887
No 365
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.48 E-value=0.044 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
-.+|+|.|+.|+||||+|+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999876
No 366
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.45 E-value=0.032 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...|.|.|+.|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999886
No 367
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.43 E-value=0.083 Score=49.23 Aligned_cols=110 Identities=15% Similarity=0.020 Sum_probs=51.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHhHcC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP--NLGELNSLLEYIHTSIK 98 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 98 (794)
-++..++|.-|.||||.|...+. +....-..++.+.... +.+.....+...++.... ...+.+ .+.+...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~--r~~~~g~kVli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVR--RTQFAKQHAIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 46888999999999999977666 3322222344443221 111112234444432211 111111 2222333
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchh
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKET 141 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 141 (794)
++--+|++|.+..-+.++++.+. .+.+ .|-.||+|.++.+
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~-~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQ-VLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHH-HHHH--TTCEEEEEECSBC
T ss_pred cCCCEEEEECcccCCHHHHHHHH-HHhh--CCCEEEEEecccc
Confidence 33349999998543334443333 3222 2678999999643
No 368
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.37 E-value=0.03 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999998876
No 369
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.31 E-value=0.092 Score=48.85 Aligned_cols=48 Identities=21% Similarity=0.179 Sum_probs=29.9
Q ss_pred EEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHH
Q 045633 24 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAII 73 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~ 73 (794)
|+|=|.-|+||||.++.+++ .....-..+++..-.......+..+.++
T Consensus 3 I~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 67889999999999999987 4444433455544333333333333333
No 370
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.31 E-value=0.029 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=16.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 371
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.30 E-value=0.24 Score=52.05 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=35.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC-CHHHHHHHHHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIEG 75 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~~ 75 (794)
+.++|.|..|+|||+|+..+.+.. ...+-+.++++-+++.. .+.++.+++...
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 467899999999999998887621 12233567787777643 345566666543
No 372
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.30 E-value=0.034 Score=53.97 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....|+|.|+.|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999876
No 373
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.26 E-value=0.09 Score=56.48 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+.|.|.+|+||||++..+..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 788999999999999988876
No 374
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.22 E-value=0.04 Score=52.83 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999876
No 375
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.22 E-value=0.04 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
-.+++|+|+.|+|||||++.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998876
No 376
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.21 E-value=0.064 Score=51.59 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=24.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEE
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWV 57 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v 57 (794)
.+++|+|+.|+|||||++.+..- .....+.+++
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl---~~p~~G~I~~ 64 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL---DKPTEGEVYI 64 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcC---CCCCceEEEE
Confidence 47999999999999999999862 2223455554
No 377
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.18 E-value=0.053 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 378
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.18 E-value=0.059 Score=51.94 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 379
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.17 E-value=0.068 Score=50.99 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999986
No 380
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.16 E-value=0.042 Score=52.02 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|+|.|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.13 E-value=0.052 Score=51.76 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..++|+|+|.+|+|||||+..+..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999988876
No 382
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.11 E-value=0.042 Score=52.24 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 383
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.07 E-value=0.24 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.153 Sum_probs=19.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+.++|+|..|+|||+|+..+++
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHH
Confidence 4678999999999999988887
No 384
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.07 E-value=0.067 Score=52.68 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999886
No 385
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.05 E-value=0.038 Score=58.35 Aligned_cols=40 Identities=28% Similarity=0.251 Sum_probs=28.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEec
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS 60 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~ 60 (794)
...++|+|+|.+|+||||+|..++.. ....=..+..|++.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~--l~~~G~kVllv~~D 136 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARY--IQKRGLKPALIAAD 136 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHH--HHHHHCCEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEecc
Confidence 34679999999999999999887763 22221235666554
No 386
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.01 E-value=0.044 Score=52.08 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.|+|.|+.|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999875
No 387
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.99 E-value=0.067 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....|+|+|.+|+|||||+..+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 567888999999999999988876
No 388
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.97 E-value=0.37 Score=62.22 Aligned_cols=139 Identities=13% Similarity=0.062 Sum_probs=75.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcCCce
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIKGKK 101 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 101 (794)
+-|.++|++|+|||++|+.+... . ..+ .++.++.+...+...+++.+...+..........- .-.-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~--~-~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~------~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN--S-SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL------LPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS--C-SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEE------EEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhc--C-CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccc------cCCCCCce
Confidence 35679999999999999766652 1 122 35667887777776666665544432110000000 00013678
Q ss_pred EEEEEeCCCCCCcc------ChhhhHhhccCCC-----C-------CcEEEEEccchh------hhh-cccccceEEccC
Q 045633 102 FFLILDDVWTDDHS------KWEPFHNCLMNGL-----C-------GSRILVTTRKET------VAR-MMESTDVISIKE 156 (794)
Q Consensus 102 ~LlvlDdv~~~~~~------~~~~l~~~l~~~~-----~-------gs~iivTtr~~~------v~~-~~~~~~~~~l~~ 156 (794)
.++++||+.-...+ ..+.+...+..++ . +..+|.++.... +.. ......++.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 99999997443322 2233333333211 1 123444443221 111 112245788999
Q ss_pred CChHhHHHHHHHHh
Q 045633 157 LSEHECWSLFKRFA 170 (794)
Q Consensus 157 l~~~ea~~Lf~~~~ 170 (794)
.+.++-..+|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99988888887654
No 389
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.96 E-value=0.063 Score=54.18 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...+|+|.|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999998876
No 390
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.95 E-value=0.27 Score=51.86 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=36.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCC-CHHHHHHHHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPF-DEFRIAKAIIE 74 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i~~ 74 (794)
+.++|.|..|+|||+|+..+.+.. ...+-+.++|+-+++.. ...++..++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 458899999999999998887621 12234677888877654 45566666654
No 391
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.92 E-value=0.092 Score=57.88 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=52.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHc----
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSI---- 97 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 97 (794)
+++.|.|.+|+||||++..+.. .....- ..+.+...... ....+.+.++... ..+..........+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~--~l~~~g-~~Vl~~ApT~~----Aa~~L~e~~~~~a---~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD--LAESLG-LEVGLCAPTGK----AARRLGEVTGRTA---STVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH--HHHHTT-CCEEEEESSHH----HHHHHHHHHTSCE---EEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHH--HHHhcC-CeEEEecCcHH----HHHHhHhhhcccH---HHHHHHHcCCcchhhhhh
Confidence 5788999999999999988876 222222 23334333211 1222222222110 11111000000000
Q ss_pred --CCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch
Q 045633 98 --KGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE 140 (794)
Q Consensus 98 --~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 140 (794)
..+--+||+|++...+...+..+...++ .+.++|+..-..
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~~ 316 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDTD 316 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECTT
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEeccc
Confidence 0123489999985555555566665554 467777765433
No 392
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.88 E-value=0.083 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999999987
No 393
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.84 E-value=0.076 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.++.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999986
No 394
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.83 E-value=0.048 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|+|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 395
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.83 E-value=0.046 Score=50.49 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+++|+|+.|+||||+++.++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999988876
No 396
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.83 E-value=0.12 Score=48.52 Aligned_cols=42 Identities=17% Similarity=0.039 Sum_probs=26.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 64 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~ 64 (794)
..+ |.+.|.||+||||+|..++. .....=..|.++.+.....
T Consensus 6 ~l~-I~~~~kgGvGKTt~a~~la~--~l~~~G~~V~v~d~D~q~~ 47 (228)
T 2r8r_A 6 RLK-VFLGAAPGVGKTYAMLQAAH--AQLRQGVRVMAGVVETHGR 47 (228)
T ss_dssp CEE-EEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCCTTC
T ss_pred eEE-EEEECCCCCcHHHHHHHHHH--HHHHCCCCEEEEEeCCCCC
Confidence 444 66899999999999977776 3322212355566654333
No 397
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.82 E-value=0.04 Score=52.64 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...|.|.|+.|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999986
No 398
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.80 E-value=0.11 Score=53.50 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+..+|+|+|.+|+||||++..+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999988765
No 399
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.79 E-value=0.075 Score=51.60 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=27.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSD 61 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~ 61 (794)
.++.|.|.+|+||||+|.+++.. ....=..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 58899999999999999877652 222224678887654
No 400
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.74 E-value=0.055 Score=52.76 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=25.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEe
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCV 59 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~ 59 (794)
.+++|+|+.|+|||||++.++..... ..-..++++..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~ 67 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEc
Confidence 58999999999999999988731110 12235566654
No 401
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.74 E-value=0.06 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.++|.|+|+.|+||||||..++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999997
No 402
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.74 E-value=0.033 Score=50.47 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++|+|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988876
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.73 E-value=0.042 Score=53.24 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|+|+|+.|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 404
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.72 E-value=0.057 Score=50.84 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999876
No 405
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.72 E-value=0.034 Score=53.50 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=15.8
Q ss_pred EEEEEEecCCCcHHHHHHHHh-C
Q 045633 22 QIISLVGMGGIGKTTLAQFAY-N 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~-~ 43 (794)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 406
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.71 E-value=0.06 Score=54.33 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999886
No 407
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.67 E-value=0.069 Score=50.47 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...+|.|.|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999886
No 408
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.66 E-value=0.14 Score=63.85 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=53.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLGELNSLLEYIH 94 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 94 (794)
.-+.|.|+|++|+|||+||.++.. ....+=..++|+++....+... ++.++.... .....++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 456888999999999999988876 3333324578888877666554 344432211 1123345555555
Q ss_pred hHc-CCceEEEEEeCC
Q 045633 95 TSI-KGKKFFLILDDV 109 (794)
Q Consensus 95 ~~l-~~~~~LlvlDdv 109 (794)
+.. ..+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 443 356779999998
No 409
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.63 E-value=0.11 Score=51.36 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=27.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP 62 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 62 (794)
++|+|.|-||+||||+|..++. .....=..|..|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~--~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS--GLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHH--HHHHCCCcEEEEcCCCC
Confidence 5788899999999999977776 23222235777877543
No 410
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.63 E-value=0.079 Score=53.06 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....+++|+|+.|+||||+++.++.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3557999999999999999998887
No 411
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.62 E-value=0.032 Score=52.96 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998876
No 412
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.61 E-value=0.062 Score=51.27 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 413
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.58 E-value=0.075 Score=50.12 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999987
No 414
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.57 E-value=0.087 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4799999999999999999987
No 415
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.54 E-value=0.09 Score=50.75 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999987
No 416
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.53 E-value=0.09 Score=50.96 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999986
No 417
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.50 E-value=0.09 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 418
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.48 E-value=0.08 Score=51.77 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=54.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCC-HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHcC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD-EFRIAKAIIEGLEGSLPNLGELNSLLEYIHTSIK 98 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 98 (794)
.-.+++|+|+.|+||||+++.+.. .+...+.+.+++.-..... .... ..+ +....... +.......+.+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~-~~~---v~q~~~gl-~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-KSI---VNQREVGE-DTKSFADALRAALR 96 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-SSE---EEEEEBTT-TBSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCc-cee---eeHHHhCC-CHHHHHHHHHHHHh
Confidence 346899999999999999998876 3332223444432211000 0000 000 00000000 00122344555555
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccchhh
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKETV 142 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 142 (794)
.++=+|++|+.- +......+.... ..|.-|++||-+...
T Consensus 97 ~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 97 EDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 566688889984 333333332222 235568888876543
No 419
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.48 E-value=0.091 Score=51.32 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 420
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.43 E-value=0.089 Score=48.72 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=20.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3446779999999999999888763
No 421
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.42 E-value=0.35 Score=52.57 Aligned_cols=52 Identities=12% Similarity=-0.040 Sum_probs=35.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCcccccc-CCeEEEEEecCCCCHHHHHHHHHHHh
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIEN-FDKRIWVCVSDPFDEFRIAKAIIEGL 76 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~i~~~l 76 (794)
-.++.|.|.+|+||||+|..++.+ .... =..++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 357889999999999999887763 2222 23578887654 4556666655443
No 422
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.42 E-value=0.11 Score=51.85 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=28.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDP 62 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~ 62 (794)
.++|+|.|-||+||||+|..++. .....=..|..|++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~--~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA--ALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH--HHHHCCCeEEEEecCCC
Confidence 47888999999999999987776 23222234677777543
No 423
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.39 E-value=0.05 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..|.|.|+.|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999986
No 424
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.39 E-value=0.084 Score=51.85 Aligned_cols=26 Identities=38% Similarity=0.367 Sum_probs=22.5
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 18 QNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 18 ~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.....++.+.|.||+||||++..++.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHH
Confidence 35678888999999999999988875
No 425
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.38 E-value=0.1 Score=49.98 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.-..|+|.|+.|+||||+++.+.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 446889999999999999999987
No 426
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.38 E-value=0.042 Score=50.63 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..+.|+|++|+||||+|..+++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999988887
No 427
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.32 E-value=0.066 Score=48.58 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..++++|.|+.|+||||+++.+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 357899999999999999998886
No 428
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.32 E-value=0.5 Score=52.31 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|.|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998876
No 429
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.30 E-value=0.098 Score=51.48 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999986
No 430
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.26 E-value=0.11 Score=50.44 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3799999999999999999987
No 431
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.25 E-value=0.052 Score=51.02 Aligned_cols=22 Identities=36% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999998875
No 432
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.24 E-value=0.066 Score=50.73 Aligned_cols=20 Identities=45% Similarity=0.498 Sum_probs=18.6
Q ss_pred EEEEecCCCcHHHHHHHHhC
Q 045633 24 ISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~ 43 (794)
|+|.|+.|+||||+|+.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999876
No 433
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.19 E-value=0.031 Score=55.80 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=18.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 434
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.15 E-value=0.07 Score=53.47 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++|.|+|+.|+||||||+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 435
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.15 E-value=0.1 Score=51.15 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999886
No 436
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.14 E-value=0.11 Score=51.64 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.++.|+|++|+||||||..++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999988775
No 437
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.11 E-value=0.18 Score=47.41 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..|+|-|+.|+||||+++.+.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5788999999999999999987
No 438
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.10 E-value=0.039 Score=50.97 Aligned_cols=109 Identities=12% Similarity=0.027 Sum_probs=52.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHhHcC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP--NLGELNSLLEYIHTSIK 98 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 98 (794)
-++..++|..|.||||.+..++++.. ...+. ++.+.... +.+.....+...++.... ...+.. .+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~k-V~v~k~~~--d~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK-IAKQK-IQVFKPEI--DNRYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC-EEEEEEC---------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCE-EEEEEecc--CccchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 36899999999999999977766322 22233 33332111 001001112222221100 011112 2333333
Q ss_pred CceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch
Q 045633 99 GKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE 140 (794)
Q Consensus 99 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 140 (794)
++--+|++|.+..-+.+.++.+.. +.+. |..||+|.++.
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~-l~~~--~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNK-IAES--GRRVICAGLDM 118 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHH-HHHT--TCEEEEEECSB
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH-HHhC--CCEEEEEeccc
Confidence 333489999874433333443333 2222 67899998854
No 439
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.09 E-value=0.082 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999886
No 440
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.08 E-value=0.068 Score=51.01 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.2
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 441
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.08 E-value=0.25 Score=52.91 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=33.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCccccccC-CeEEEEEecCCCCHHHHHHHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIENF-DKRIWVCVSDPFDEFRIAKAII 73 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~i~ 73 (794)
.++.|.|.+|+||||+|..++.. ..... ..|+|++... +...+...++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~--~~~~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQN--VATKTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH--HHHHSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHhCCCcEEEEECCC--CHHHHHHHHH
Confidence 58889999999999999888763 22211 3578887643 3455555544
No 442
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.03 E-value=0.51 Score=50.10 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=33.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIE 74 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~ 74 (794)
-.++.|.|.+|+||||+|..++.+ ....=..++|++... +..++...+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEECSSS--CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEECCC--CHHHHHHHHHH
Confidence 357889999999999999888763 222223577876653 33444444443
No 443
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.98 E-value=0.077 Score=52.60 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.++|+|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36889999999999999999987
No 444
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.93 E-value=0.13 Score=53.44 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=32.0
Q ss_pred CCCeEEEEEEe-cCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCC
Q 045633 18 QNAVQIISLVG-MGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFD 64 (794)
Q Consensus 18 ~~~~~~v~I~G-~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~ 64 (794)
..+.++|+|+| -||+||||+|..++. .....=..|+.|++....+
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~--~La~~g~rVlliD~D~~~~ 185 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAI--AHANMGKKVFYLNIEQCGT 185 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHH--HHHHHTCCEEEEECCTTCC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHH--HHHhCCCCEEEEECCCCCC
Confidence 45789999986 999999999977776 3333323578888764333
No 445
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.91 E-value=0.11 Score=53.32 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....+|+|+|+.|+||||+++.++.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Confidence 3567999999999999999998887
No 446
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.90 E-value=0.12 Score=51.15 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3799999999999999999987
No 447
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.89 E-value=0.42 Score=50.96 Aligned_cols=51 Identities=8% Similarity=-0.023 Sum_probs=35.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhCCcccccc-CCeEEEEEecCCCCHHHHHHHHHHHh
Q 045633 22 QIISLVGMGGIGKTTLAQFAYNDKDVIEN-FDKRIWVCVSDPFDEFRIAKAIIEGL 76 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~i~~~l 76 (794)
.++.|.|.+|+||||+|..++.+ .... =..|+|++.. .+..++...++...
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 58889999999999999888763 2221 2357887765 34556666665443
No 448
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.85 E-value=0.078 Score=49.68 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+|.|.|++|+||+|.|+.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999886
No 449
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.83 E-value=0.085 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999987
No 450
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.79 E-value=0.29 Score=51.25 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 18 QNAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 18 ~~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....++..|.|.+|.||||+.++.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 45789999999999999999998875
No 451
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.77 E-value=0.095 Score=48.04 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
+.|.|.|+.|+||||||.++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999874
No 452
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.74 E-value=0.087 Score=51.75 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999987
No 453
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.74 E-value=0.077 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.163 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...|.|.|+.|+||||+|+.+++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999986
No 454
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.71 E-value=0.095 Score=50.28 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=22.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..-.+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4557999999999999999998876
No 455
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.63 E-value=0.091 Score=51.37 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 456
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.62 E-value=0.09 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998876
No 457
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.51 E-value=0.32 Score=46.69 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=16.5
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 045633 22 QIISLVGMGGIGKTTLAQFA 41 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~ 41 (794)
+.+.|.|..|+||||++..+
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHH
Confidence 46889999999999876544
No 458
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.51 E-value=0.094 Score=50.99 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3799999999999999999987
No 459
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.50 E-value=0.099 Score=52.60 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999875
No 460
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.48 E-value=0.11 Score=51.46 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..++|.|.|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999986
No 461
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.45 E-value=0.14 Score=48.00 Aligned_cols=42 Identities=21% Similarity=0.131 Sum_probs=29.2
Q ss_pred EEEEEE-ecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCH
Q 045633 22 QIISLV-GMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 65 (794)
Q Consensus 22 ~~v~I~-G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~ 65 (794)
++|+|+ +-||+||||+|..++. .....=..|..|+.....+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~--~la~~g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT--ALSRSGYNIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEECCCCCCH
Confidence 678887 6899999999987776 33332235778887654443
No 462
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.38 E-value=0.15 Score=52.04 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=30.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCcccc--ccCCeEEEEEecCCCC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVI--ENFDKRIWVCVSDPFD 64 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~--~~f~~~~~v~~~~~~~ 64 (794)
..+++.+.|.||+||||+|..++. ... ..=..|.-|+.....+
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~--~la~~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAV--QLALAQPNEQFLLISTDPAHN 61 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSSCH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCCCC
Confidence 568999999999999999987775 233 2223577777764433
No 463
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.31 E-value=0.14 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998763
No 464
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.26 E-value=0.17 Score=51.31 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=30.9
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDE 65 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~ 65 (794)
..+++.+.|.||+||||+|..++. .....=..|+-|+.....+.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~--~la~~g~~vllid~D~~~~l 58 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI--QLAKVRRSVLLLSTDPAHNL 58 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH--HHTTSSSCEEEEECCSSCHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH--HHHhCCCcEEEEECCCCCCh
Confidence 467888999999999999977765 23332235777877654433
No 465
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.24 E-value=0.1 Score=47.92 Aligned_cols=20 Identities=45% Similarity=0.547 Sum_probs=18.5
Q ss_pred EEEEecCCCcHHHHHHHHhC
Q 045633 24 ISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~ 43 (794)
|+|+|.+|+|||||++.+..
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 66999999999999999887
No 466
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.23 E-value=0.14 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457889999999999999988764
No 467
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.19 E-value=0.11 Score=51.92 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
=.+++|+|+.|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 35899999999999999998875
No 468
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.00 E-value=0.26 Score=50.38 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+..+|+|+|.+|+||||++..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999988864
No 469
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.88 E-value=0.12 Score=49.88 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...|+|.|..|+||||+|+.+++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999886
No 470
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.86 E-value=0.15 Score=52.70 Aligned_cols=24 Identities=29% Similarity=0.162 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.-++++|+|+.|+|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999986
No 471
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.84 E-value=0.13 Score=51.44 Aligned_cols=22 Identities=36% Similarity=0.711 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|+|+|+.|+|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4799999999999999999876
No 472
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.75 E-value=0.21 Score=52.77 Aligned_cols=84 Identities=18% Similarity=0.120 Sum_probs=48.1
Q ss_pred EEEEEEecCCCcHHHHH-HHHhCCccccccCCe-EEEEEecCCC-CHHHHHHHHHHHhcC-------CCCCCCCHHH---
Q 045633 22 QIISLVGMGGIGKTTLA-QFAYNDKDVIENFDK-RIWVCVSDPF-DEFRIAKAIIEGLEG-------SLPNLGELNS--- 88 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~-~~~v~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~--- 88 (794)
+.++|.|..|+|||+|| ..++++. .-+. ++++-+++.. .+.++.+.+...=.. ...+......
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 45789999999999996 5777732 2453 4677777543 344555555432100 0111111111
Q ss_pred --HHHHHHhHc--CCceEEEEEeCC
Q 045633 89 --LLEYIHTSI--KGKKFFLILDDV 109 (794)
Q Consensus 89 --~~~~l~~~l--~~~~~LlvlDdv 109 (794)
..-.+.+++ +++.+||++||+
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccH
Confidence 112233333 689999999998
No 473
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.75 E-value=0.26 Score=47.14 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..|.|.|+.|+||||+++.+.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999999987
No 474
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.71 E-value=0.33 Score=45.66 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=51.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEec--CCCCHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHhH
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVS--DPFDEFRIAKAIIEGLEGSLPN--LGELNSLLEYIHTS 96 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~--~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~ 96 (794)
-++..++|.-|.||||-|...+.+. ...... ++.+... .... . .+...++..... ....+++.+.+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~-~~~g~k-vli~kp~~D~Ryg-~----~i~sr~G~~~~a~~i~~~~di~~~~--- 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRF-QIAQYK-CLVIKYAKDTRYS-S----SFCTHDRNTMEALPACLLRDVAQEA--- 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH-HTTTCC-EEEEEETTCCCC----------------CEEEEESSGGGGHHHH---
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH-HHCCCe-EEEEeecCCccch-H----HHHhhcCCeeEEEecCCHHHHHHHh---
Confidence 4688899999999998886555522 222233 3434322 1222 2 333433322110 11222222222
Q ss_pred cCCceEEEEEeCCCCCCccChhhhHhhccCCCCCcEEEEEccch
Q 045633 97 IKGKKFFLILDDVWTDDHSKWEPFHNCLMNGLCGSRILVTTRKE 140 (794)
Q Consensus 97 l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 140 (794)
++--+|++|++.-- ....++...+.. .|-.||+|.++.
T Consensus 89 --~~~dvViIDEaQF~--~~v~el~~~l~~--~gi~VI~~GL~~ 126 (234)
T 2orv_A 89 --LGVAVIGIDEGQFF--PDIVEFCEAMAN--AGKTVIVAALDG 126 (234)
T ss_dssp --TTCSEEEESSGGGC--TTHHHHHHHHHH--TTCEEEEECCSB
T ss_pred --ccCCEEEEEchhhh--hhHHHHHHHHHh--CCCEEEEEeccc
Confidence 23349999998432 225555555544 467899999974
No 475
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.70 E-value=0.13 Score=50.31 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+++|+|+.|+|||||.+.++.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999999986
No 476
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.68 E-value=0.18 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|.|+.|+|||||.+.++.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4799999999999999999987
No 477
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.66 E-value=0.35 Score=60.26 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=54.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEFRIAKAIIEGLEGSLP-----NLGELNSLLEYIH 94 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 94 (794)
.-+++.|+|++|+||||||.+++. .....=..++|++.....+.. .++.++.... +..+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~--~~a~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 335889999999999999988876 333222468899887766543 1445544321 1235566655555
Q ss_pred hHc-CCceEEEEEeCCC
Q 045633 95 TSI-KGKKFFLILDDVW 110 (794)
Q Consensus 95 ~~l-~~~~~LlvlDdv~ 110 (794)
+.. +.+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 433 2456699999883
No 478
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.65 E-value=0.13 Score=47.92 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999988764
No 479
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.63 E-value=0.22 Score=47.09 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHhC
Q 045633 19 NAVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 19 ~~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.....|.|.|+.|+||||+++.+.+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999987
No 480
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.57 E-value=0.2 Score=48.48 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...|.++|++|.|||.+|.++++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999999986
No 481
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.57 E-value=0.13 Score=50.45 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHhC
Q 045633 23 IISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999998886
No 482
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.57 E-value=0.15 Score=45.28 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
+.|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999888764
No 483
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.47 E-value=0.2 Score=48.72 Aligned_cols=41 Identities=27% Similarity=0.225 Sum_probs=28.4
Q ss_pred EEEEecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHH
Q 045633 24 ISLVGMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 66 (794)
Q Consensus 24 v~I~G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 66 (794)
|+|.|-||+||||+|..++. .....=..|+-|+.....+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~--~la~~g~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK--IMASDYDKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH--HHTTTCSCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCcChH
Confidence 56699999999999987776 232222457788876655543
No 484
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.45 E-value=0.2 Score=47.66 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=17.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..|.|-|+.|+||||+++.+.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999987
No 485
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.44 E-value=0.31 Score=45.83 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
..|+|-|+.|+||||+++.+.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999887
No 486
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.44 E-value=0.13 Score=53.71 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
...+|+|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 556999999999999999999987
No 487
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.43 E-value=0.19 Score=52.44 Aligned_cols=85 Identities=11% Similarity=0.125 Sum_probs=49.2
Q ss_pred EEEEEecCCCcHHHHHHHHhCCccccccCC----eEEEEEecCC-CCHHHHHHHHHHH--hcC-----CCCCCCCHH---
Q 045633 23 IISLVGMGGIGKTTLAQFAYNDKDVIENFD----KRIWVCVSDP-FDEFRIAKAIIEG--LEG-----SLPNLGELN--- 87 (794)
Q Consensus 23 ~v~I~G~gGiGKTtLa~~~~~~~~~~~~f~----~~~~v~~~~~-~~~~~~~~~i~~~--l~~-----~~~~~~~~~--- 87 (794)
.++|.|..|+|||+|+.+++++ ...+.+ .++++-+++. ..+.++.+++... +.. ...+.....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~--~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQ--ATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHH--CBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHH--HHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 4679999999999999988873 222223 5667777653 3445555555442 110 011111111
Q ss_pred --HHHHHHHhHc---CCceEEEEEeCC
Q 045633 88 --SLLEYIHTSI---KGKKFFLILDDV 109 (794)
Q Consensus 88 --~~~~~l~~~l---~~~~~LlvlDdv 109 (794)
...-.+.+++ +++.+|+++||+
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1122333444 378999999998
No 488
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.37 E-value=0.12 Score=48.17 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+|+|.|+.|+||||+|+.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 489
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.36 E-value=0.15 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++.+|+|+.|+|||||+++++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999988864
No 490
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.35 E-value=0.1 Score=54.11 Aligned_cols=23 Identities=39% Similarity=0.384 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHhC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+.|.++|++|+|||++|+.+++
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999987
No 491
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.34 E-value=0.22 Score=52.61 Aligned_cols=84 Identities=20% Similarity=0.152 Sum_probs=47.5
Q ss_pred EEEEEEecCCCcHHHHH-HHHhCCccccccCCe-EEEEEecCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 045633 22 QIISLVGMGGIGKTTLA-QFAYNDKDVIENFDK-RIWVCVSDPF-DEFRIAKAIIEGLEGS-------LPNLGELNS--- 88 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa-~~~~~~~~~~~~f~~-~~~v~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 88 (794)
+.++|.|..|+|||+|| ..+.++. .-+. ++++-+++.. .+.++.+.+...=... ..+......
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 45789999999999996 5777632 2453 4677777543 3445555554321111 111111111
Q ss_pred --HHHHHHhHc--CCceEEEEEeCC
Q 045633 89 --LLEYIHTSI--KGKKFFLILDDV 109 (794)
Q Consensus 89 --~~~~l~~~l--~~~~~LlvlDdv 109 (794)
..-.+.+++ +++.+|+++||+
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecH
Confidence 112233333 689999999998
No 492
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.33 E-value=0.15 Score=50.67 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHhCC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
.+++|+|+.|+|||||.+.++.-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999873
No 493
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.31 E-value=0.26 Score=46.36 Aligned_cols=41 Identities=22% Similarity=0.137 Sum_probs=28.3
Q ss_pred EEEEE-ecCCCcHHHHHHHHhCCccccccCCeEEEEEecCCCCHH
Q 045633 23 IISLV-GMGGIGKTTLAQFAYNDKDVIENFDKRIWVCVSDPFDEF 66 (794)
Q Consensus 23 ~v~I~-G~gGiGKTtLa~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 66 (794)
+|+|+ +-||+||||+|..++. .....- .|..|+.....+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~--~la~~g-~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSA--YLALQG-ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHTTS-CEEEEEECTTCHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHH--HHHhcC-CEEEEECCCCCCHH
Confidence 56664 7899999999987776 333333 67788887654443
No 494
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.26 E-value=0.2 Score=51.12 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++|+|+.|+|||||++.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 4799999999999999999886
No 495
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.22 E-value=0.19 Score=46.20 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHhCC
Q 045633 21 VQIISLVGMGGIGKTTLAQFAYND 44 (794)
Q Consensus 21 ~~~v~I~G~gGiGKTtLa~~~~~~ 44 (794)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999998874
No 496
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=90.21 E-value=0.17 Score=56.33 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=19.0
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
+.+.|.|.+|.||||++..+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5788999999999999877654
No 497
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.12 E-value=0.14 Score=51.73 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHhC
Q 045633 20 AVQIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 20 ~~~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
.+++++|+|+-|+|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 578999999999999999999885
No 498
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.11 E-value=0.45 Score=50.16 Aligned_cols=84 Identities=19% Similarity=0.178 Sum_probs=47.9
Q ss_pred EEEEEEecCCCcHHHHH-HHHhCCccccccCC-eEEEEEecCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 045633 22 QIISLVGMGGIGKTTLA-QFAYNDKDVIENFD-KRIWVCVSDPF-DEFRIAKAIIEGLEGS-------LPNLGELNS--- 88 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa-~~~~~~~~~~~~f~-~~~~v~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 88 (794)
+.++|.|..|+|||+|| ..+.+. ..-+ .++++-+++.. .+.++.+.+.+.=... ..+......
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 45789999999999997 567663 2233 35788887653 3445555544321111 111111111
Q ss_pred --HHHHHHhHc--CCceEEEEEeCC
Q 045633 89 --LLEYIHTSI--KGKKFFLILDDV 109 (794)
Q Consensus 89 --~~~~l~~~l--~~~~~LlvlDdv 109 (794)
..-.+.+++ +++.+||++||+
T Consensus 239 ~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 239 PYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCh
Confidence 111223333 689999999998
No 499
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.01 E-value=0.17 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHhC
Q 045633 22 QIISLVGMGGIGKTTLAQFAYN 43 (794)
Q Consensus 22 ~~v~I~G~gGiGKTtLa~~~~~ 43 (794)
++|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5889999999999999999886
No 500
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.00 E-value=0.31 Score=47.06 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=28.6
Q ss_pred CeEEEEEEe-cCCCcHHHHHHHHhCCcccccc-CCeEEEEEecCC
Q 045633 20 AVQIISLVG-MGGIGKTTLAQFAYNDKDVIEN-FDKRIWVCVSDP 62 (794)
Q Consensus 20 ~~~~v~I~G-~gGiGKTtLa~~~~~~~~~~~~-f~~~~~v~~~~~ 62 (794)
..++|+|+| -||+||||+|..++. ..... =..|+.|++...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~--~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAF--ALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH--HHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHH--HHHhCcCCCEEEEECCCC
Confidence 467888875 699999999987776 33332 235777877543
Done!