BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045634
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 91/142 (64%), Gaps = 1/142 (0%)
Query: 14 SKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDIS 73
+KY VFLSFRG DTR+ F S L L R+ I+ F DD+ELE G SP L +E S +
Sbjct: 7 TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66
Query: 74 VIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHEN 133
V+++S++YA+S WCL+ELV I+D +K V+P+FY V+P+ VR Q E F H +
Sbjct: 67 VVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS 126
Query: 134 NF-PDKVQKWRDALTEASNLSG 154
P+KV KWR ALT + LSG
Sbjct: 127 REDPEKVLKWRQALTNFAQLSG 148
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
Query: 15 KYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISV 74
+Y+VFLSFRG DTR FT L +L R +I F DD+EL KG EI P L A++ S I V
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 75 IILSKDYASSKWCLNELVNILDCKKMNG-KIVIPVFYQVDPSDVRKQRRSFGEAFVHHEN 133
I+S YA SKWCL EL I+ ++ + +I++P+FY VDPSDVR Q + +AF H N
Sbjct: 95 PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 134 NFPDK-VQKWRDALTEASNLSGY 155
F + +Q W+DAL + +L G+
Sbjct: 155 KFDGQTIQNWKDALKKVGDLKGW 177
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 10 LTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVET 69
LT + +F+S ED + F LA L + + DD L GD + ++ + +
Sbjct: 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGS 73
Query: 70 SDISVIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDV 117
S +++LS + +W EL + + ++P++++V +V
Sbjct: 74 SRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEV 121
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 15 KYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISV 74
++ F+S+ G D+ + L L ++ Q + + G I + +E S S+
Sbjct: 12 QFHAFISYSGHDSF-WVKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYKSI 70
Query: 75 IILSKDYASSKWCLNEL 91
+LS ++ S+WC EL
Sbjct: 71 FVLSPNFVQSEWCHYEL 87
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 170 KVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLDKC-GVNNMYEVK-GLKYN 227
+ L++LDDV D + LK+ F + +I++T+RDK V D G ++ V+ GL
Sbjct: 237 RSLLILDDVWDPWV-LKA------FDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGRE 289
Query: 228 KALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLA 269
K LE+ F DL + +++ G+PL + ++
Sbjct: 290 KGLEIL--SLFVNMK-KEDLPAEAHSIIKECKGSPLVVSLIG 328
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 22/107 (20%)
Query: 170 KVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLDKC-GVNNMYEVK-GLKYN 227
+ L++LDDV D + LK+ F + +I++T+RDK V D G + V+ L
Sbjct: 237 RSLLILDDVWDSWV-LKA------FDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKE 289
Query: 228 KALELFC-----RKAFRETNCSHDLLELSEEVVRHADGNPLALEVLA 269
K LE+ +KA DL E + +++ G+PL + ++
Sbjct: 290 KGLEILSLFVNMKKA--------DLPEQAHSIIKECKGSPLVVSLIG 328
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 28/120 (23%)
Query: 163 KKRLQLM------KVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLDKC-GV 215
K RL+++ + L++LDDV D + LK+ F + +I++T+RDK V D G
Sbjct: 230 KDRLRILMLRKHPRSLLILDDVWDSWV-LKA------FDSQCQILLTTRDKSVTDSVMGP 282
Query: 216 NNMYEVK-GLKYNKALELFC-----RKAFRETNCSHDLLELSEEVVRHADGNPLALEVLA 269
+ V+ L K LE+ +KA DL E + +++ G+PL + ++
Sbjct: 283 KYVVPVESSLGKEKGLEILSLFVNMKKA--------DLPEQAHSIIKECKGSPLVVSLIG 334
>pdb|4GAM|A Chain A, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|F Chain F, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|K Chain K, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|P Chain P, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
Length = 527
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 11/61 (18%)
Query: 56 GDEISPALFIAVETSDI--------SVIILSKDYASSKWCLNELVNILDCKKMNGKIVIP 107
GDEI+P +F+++ET ++ +V+ ++ D AS+K+ +L N ++ K P
Sbjct: 228 GDEITPTVFLSIETDELRHMANGYQTVVSIANDPASAKYLNTDLNNAFWTQQ---KYFTP 284
Query: 108 V 108
V
Sbjct: 285 V 285
>pdb|1FZ4|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ4|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ5|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ5|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ7|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FZ7|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Soaked In 0.9
M Ethanol
pdb|1FYZ|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FYZ|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FZ0|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ0|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ1|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ1|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ2|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ2|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ3|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ3|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph 6.2
(0.1 M Pipes)
pdb|1FZ6|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ6|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ8|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ8|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Dibromomethane
pdb|1FZ9|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZ9|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Cocrystallized
With Iodoethane
pdb|1FZH|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZH|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZI|A Chain A, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1FZI|B Chain B, Methane Monooxygenase Hydroxylase, Form I Pressurized With
Xenon Gas
pdb|1XMF|A Chain A, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMF|B Chain B, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMG|A Chain A, Crystal Structure Of Apo Methane Monooxygenase Hydroxylase
From M. Capsulatus (Bath)
pdb|1XMG|B Chain B, Crystal Structure Of Apo Methane Monooxygenase Hydroxylase
From M. Capsulatus (Bath)
pdb|1XMH|A Chain A, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
pdb|1XMH|B Chain B, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
pdb|1XU5|A Chain A, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XU5|B Chain B, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XVB|A Chain A, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol
Soaked Structure
pdb|1XVB|B Chain B, Soluble Methane Monooxygenase Hydroxylase: 6-Bromohexanol
Soaked Structure
pdb|1XVC|A Chain A, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol
Soaked Structure
pdb|1XVC|B Chain B, Soluble Methane Monooxygenase Hydroxylase: 8-Bromooctanol
Soaked Structure
pdb|1XVD|A Chain A, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol
Soaked Structure
pdb|1XVD|B Chain B, Soluble Methane Monooxygenase Hydroxylase: 4-Fluorophenol
Soaked Structure
pdb|1XVE|A Chain A, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVE|B Chain B, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVF|A Chain A, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol
Soaked Structure
pdb|1XVF|B Chain B, Soluble Methane Monooxygenase Hydroxylase: Chloropropanol
Soaked Structure
pdb|1XVG|A Chain A, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XVG|B Chain B, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XU3|A Chain A, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
pdb|1XU3|B Chain B, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
Length = 527
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 11/61 (18%)
Query: 56 GDEISPALFIAVETSDI--------SVIILSKDYASSKWCLNELVNILDCKKMNGKIVIP 107
GDEI+P +F+++ET ++ +V+ ++ D AS+K+ +L N ++ K P
Sbjct: 228 GDEITPTVFLSIETDELRHMANGYQTVVSIANDPASAKYLNTDLNNAFWTQQ---KYFTP 284
Query: 108 V 108
V
Sbjct: 285 V 285
>pdb|1MMO|D Chain D, Crystal Structure Of A Bacterial Non-Haem Iron Hydroxylase
That Catalyses The Biological Oxidation Of Methane
pdb|1MMO|E Chain E, Crystal Structure Of A Bacterial Non-Haem Iron Hydroxylase
That Catalyses The Biological Oxidation Of Methane
pdb|1MTY|D Chain D, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
pdb|1MTY|E Chain E, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
Length = 512
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 11/61 (18%)
Query: 56 GDEISPALFIAVETSDI--------SVIILSKDYASSKWCLNELVNILDCKKMNGKIVIP 107
GDEI+P +F+++ET ++ +V+ ++ D AS+K+ +L N ++ K P
Sbjct: 214 GDEITPTVFLSIETDELRHMANGYQTVVSIANDPASAKYLNTDLNNAFWTQQ---KYFTP 270
Query: 108 V 108
V
Sbjct: 271 V 271
>pdb|1MHZ|D Chain D, Methane Monooxygenase Hydroxylase
pdb|1MHY|D Chain D, Methane Monooxygenase Hydroxylase
Length = 521
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 11/61 (18%)
Query: 56 GDEISPALFIAVETSDI--------SVIILSKDYASSKWCLNELVNILDCKKMNGKIVIP 107
GDEI+P +F++VET ++ +V+ ++ D AS+K+ +L N ++ K P
Sbjct: 223 GDEITPTVFLSVETDELRHMANGYQTVVSIANDPASAKFLNTDLNNAFWTQQ---KYFTP 279
Query: 108 V 108
V
Sbjct: 280 V 280
>pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
Length = 382
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 19/128 (14%)
Query: 157 STESRIKKRLQLMKVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLDKCGVN 216
STE ++ K LQ +V D +H F L S I S +L+ VN
Sbjct: 49 STEDQMAKVLQFNEVGAAADKIHSSFRSLSS------------AINASTGNYLLES--VN 94
Query: 217 NMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNNGKLM 276
++ K + + C+K + + D LE +EE + + V GK+
Sbjct: 95 KLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEEARKKINS-----WVKTQTKGKIP 149
Query: 277 KLISEPNI 284
L+ E ++
Sbjct: 150 NLLPEGSV 157
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 10 LTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQF----FIDDEELEKG 56
LT + +F+ ++ R GF+ + LH+ IQF DEE+ +G
Sbjct: 12 LTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQG 62
>pdb|3CH7|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Leishmania Braziliensis
Length = 266
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 21/87 (24%)
Query: 37 AALHRKQIQFFIDDEELEKGDE-------ISPALFIAVETSDISVIILSKDYASSK---- 85
A L + +QF + DE L D+ + AL V +SD+ I A+SK
Sbjct: 61 ALLQQHAVQFILGDERLLSEDDEQSNFSMATKALLRDVPSSDVISIDRRAALATSKDEKG 120
Query: 86 -----WCLNE-----LVNILDCKKMNG 102
W + + L+N L CK++NG
Sbjct: 121 GLDGAWAVAQDYEVKLLNCLPCKQING 147
>pdb|3CSS|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Leishmania Guyanensis
Length = 267
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 21/87 (24%)
Query: 37 AALHRKQIQFFIDDEELEKGDE-------ISPALFIAVETSDISVIILSKDYASSK---- 85
A L + +QF + DE L D+ + AL V +SD+ I A+SK
Sbjct: 62 ALLQQHAVQFILGDERLLSEDDEQSNFSMATKALLRDVPSSDVISIDRRAALATSKDEKG 121
Query: 86 -----WCLNE-----LVNILDCKKMNG 102
W + + L+N L CK++NG
Sbjct: 122 GLDGAWAVAQDYEVKLLNCLPCKQING 148
>pdb|1HI8|A Chain A, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
pdb|1HI8|B Chain B, Rna Dependent Rna Polymerase From Dsrna Bacteriophage Phi6
Length = 664
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 236 KAFRETNCSHDLLELSEEVVRH------ADGNPLALEVLANNNGKLMKLISEPNI-YNVL 288
+A+RE D LELS V A+ P+ LEVLA+ N KL +E ++ N+
Sbjct: 584 RAYREDXLKRDTLELSRYVASXARQAGLAELTPIDLEVLADPN-KLQYKWTEADVSANIH 642
Query: 289 KISYDELNLEEKKTFL 304
++ +++E+ + FL
Sbjct: 643 EVLXHGVSVEKTERFL 658
>pdb|1PP0|A Chain A, Volvatoxin A2 In Monoclinic Crystal
pdb|1PP0|B Chain B, Volvatoxin A2 In Monoclinic Crystal
pdb|1PP0|C Chain C, Volvatoxin A2 In Monoclinic Crystal
pdb|1PP0|D Chain D, Volvatoxin A2 In Monoclinic Crystal
pdb|1PP6|A Chain A, Vva2 (Strip Crystal Form)
pdb|1PP6|B Chain B, Vva2 (Strip Crystal Form)
pdb|1PP6|C Chain C, Vva2 (Strip Crystal Form)
pdb|1PP6|D Chain D, Vva2 (Strip Crystal Form)
pdb|1PP6|E Chain E, Vva2 (Strip Crystal Form)
pdb|1VGF|A Chain A, Volvatoxin A2 (Diamond Crystal Form)
pdb|1VGF|B Chain B, Volvatoxin A2 (Diamond Crystal Form)
Length = 199
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 282 PNIYNVLKISYDELNLEEKKTFLDIACF------FTGEDIDF 317
P+ VLK S L LE+ K + D F +TGED+ F
Sbjct: 19 PSSIQVLKFSGKYLKLEQDKAYFDWPGFKTAIDNYTGEDLSF 60
>pdb|2ARQ|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-Acetyl-Teaaagdggvmtgr-Oh
pdb|2ARR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-acetyl-teaaagmggvmtgr-oh
Length = 382
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 19/128 (14%)
Query: 157 STESRIKKRLQLMKVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLDKCGVN 216
STE ++ LQ +V D +H F L S I S +L+ VN
Sbjct: 49 STEDQMASVLQFNEVGAAADKIHSSFRSLSS------------AINASTGNYLLES--VN 94
Query: 217 NMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNNGKLM 276
++ K + + C+K + + D LE +EE + + V GK+
Sbjct: 95 KLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEEARKKINS-----WVKTQTKGKIP 149
Query: 277 KLISEPNI 284
L+ E ++
Sbjct: 150 NLLPEGSV 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,037,551
Number of Sequences: 62578
Number of extensions: 405650
Number of successful extensions: 1099
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 22
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)