Query 045634
Match_columns 353
No_of_seqs 337 out of 2786
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:56:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.9E-68 4E-73 566.5 27.2 348 1-353 1-497 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 4.8E-40 1E-44 335.1 16.7 248 104-353 180-490 (889)
3 PLN03194 putative disease resi 100.0 5.9E-37 1.3E-41 252.3 12.3 138 6-157 17-155 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 4.5E-32 9.8E-37 248.3 14.2 236 88-325 5-279 (287)
5 PF01582 TIR: TIR domain; Int 99.8 1.3E-20 2.7E-25 154.1 3.0 130 18-147 1-140 (141)
6 smart00255 TIR Toll - interleu 99.7 2.2E-18 4.8E-23 140.6 7.6 134 15-150 1-138 (140)
7 PF13676 TIR_2: TIR domain; PD 99.6 1.7E-15 3.7E-20 116.6 3.4 86 18-110 1-86 (102)
8 PRK04841 transcriptional regul 99.1 9.7E-09 2.1E-13 108.5 21.2 180 168-353 120-327 (903)
9 KOG3678 SARM protein (with ste 98.8 1.3E-08 2.9E-13 94.5 7.9 95 10-110 607-709 (832)
10 PF08937 DUF1863: MTH538 TIR-l 98.1 5.1E-06 1.1E-10 66.6 6.2 90 16-110 1-107 (130)
11 COG2909 MalT ATP-dependent tra 98.1 0.00017 3.7E-09 72.8 16.0 272 69-353 9-333 (894)
12 PRK00411 cdc6 cell division co 98.0 0.00062 1.3E-08 65.1 18.6 263 76-340 22-358 (394)
13 COG3903 Predicted ATPase [Gene 98.0 1.3E-05 2.8E-10 74.6 6.5 230 106-340 19-292 (414)
14 TIGR00635 ruvB Holliday juncti 98.0 5.4E-05 1.2E-09 69.8 10.6 145 197-343 130-293 (305)
15 PRK00080 ruvB Holliday junctio 97.9 9.8E-05 2.1E-09 68.9 10.7 142 197-340 151-310 (328)
16 TIGR03015 pepcterm_ATPase puta 97.5 0.0032 7E-08 56.8 14.5 104 167-271 121-241 (269)
17 PF05729 NACHT: NACHT domain 97.5 0.00058 1.3E-08 56.5 8.9 71 167-237 79-163 (166)
18 PF08357 SEFIR: SEFIR domain; 97.5 0.00016 3.4E-09 59.4 5.3 65 17-81 2-70 (150)
19 PF01637 Arch_ATPase: Archaeal 97.4 0.0022 4.9E-08 56.1 12.0 97 169-267 118-233 (234)
20 TIGR02928 orc1/cdc6 family rep 97.3 0.035 7.7E-07 52.4 19.1 180 160-340 118-350 (365)
21 COG3899 Predicted ATPase [Gene 97.2 0.016 3.5E-07 60.8 17.3 155 168-325 153-336 (849)
22 COG2256 MGS1 ATPase related to 97.2 0.0015 3.3E-08 60.8 8.1 136 111-261 58-205 (436)
23 PRK13342 recombination factor 96.3 0.032 6.9E-07 53.8 10.0 99 167-267 90-195 (413)
24 PRK06893 DNA replication initi 96.1 0.026 5.5E-07 49.8 7.8 95 170-266 92-201 (229)
25 PF13173 AAA_14: AAA domain 95.8 0.021 4.6E-07 45.3 5.5 63 166-229 58-127 (128)
26 PF14516 AAA_35: AAA-like doma 95.8 0.96 2.1E-05 42.2 17.2 266 59-348 19-322 (331)
27 PF10137 TIR-like: Predicted n 95.2 0.07 1.5E-06 42.2 6.3 62 18-82 2-63 (125)
28 PRK08727 hypothetical protein; 95.1 0.13 2.9E-06 45.4 8.7 93 170-264 94-200 (233)
29 PRK05564 DNA polymerase III su 94.7 0.9 1.9E-05 42.0 13.4 94 169-268 93-190 (313)
30 PRK07471 DNA polymerase III su 94.5 0.31 6.8E-06 46.1 9.9 97 168-270 140-240 (365)
31 PRK08084 DNA replication initi 94.4 0.23 5E-06 44.0 8.4 93 171-265 99-206 (235)
32 PF00308 Bac_DnaA: Bacterial d 94.3 0.49 1.1E-05 41.3 10.2 104 160-266 89-206 (219)
33 PLN03025 replication factor C 93.5 0.57 1.2E-05 43.5 9.5 93 169-263 99-195 (319)
34 PRK00440 rfc replication facto 93.4 1.5 3.2E-05 40.4 12.2 94 170-265 103-200 (319)
35 PRK13341 recombination factor 93.2 0.5 1.1E-05 48.8 9.4 92 168-261 108-210 (725)
36 PRK04195 replication factor C 93.1 1.4 3E-05 43.4 12.1 93 169-265 98-199 (482)
37 TIGR00678 holB DNA polymerase 92.2 0.85 1.8E-05 38.6 8.2 88 168-263 95-186 (188)
38 TIGR03420 DnaA_homol_Hda DnaA 92.1 0.52 1.1E-05 41.1 6.9 98 171-270 92-203 (226)
39 PRK09112 DNA polymerase III su 91.8 1.4 3E-05 41.5 9.6 100 168-271 140-243 (351)
40 PRK12323 DNA polymerase III su 91.5 1.1 2.3E-05 45.5 8.9 97 168-266 123-223 (700)
41 PRK09087 hypothetical protein; 90.7 0.84 1.8E-05 40.1 6.8 92 172-266 90-193 (226)
42 PRK05707 DNA polymerase III su 90.4 3.9 8.4E-05 38.1 11.2 94 169-269 107-204 (328)
43 PTZ00112 origin recognition co 89.9 3.1 6.7E-05 43.7 10.6 169 170-340 870-1086(1164)
44 PRK14960 DNA polymerase III su 89.7 2.6 5.6E-05 42.9 9.8 96 168-265 117-216 (702)
45 TIGR01242 26Sp45 26S proteasom 89.4 2.8 6.1E-05 39.6 9.6 90 168-262 214-328 (364)
46 PRK14964 DNA polymerase III su 89.1 3.9 8.5E-05 40.3 10.5 94 168-263 115-212 (491)
47 cd00009 AAA The AAA+ (ATPases 88.9 1.5 3.2E-05 34.5 6.4 41 167-208 82-131 (151)
48 PRK07994 DNA polymerase III su 88.8 3.3 7.2E-05 42.2 10.0 97 168-266 118-218 (647)
49 KOG2028 ATPase related to the 88.0 3.3 7.1E-05 38.8 8.5 118 104-235 163-292 (554)
50 COG4916 Uncharacterized protei 87.8 1.3 2.8E-05 38.9 5.5 114 10-129 172-297 (329)
51 COG0593 DnaA ATPase involved i 86.8 2.1 4.5E-05 40.9 6.8 127 103-239 113-259 (408)
52 PRK14086 dnaA chromosomal repl 86.3 4.6 9.9E-05 40.8 9.2 97 162-261 371-481 (617)
53 PRK12402 replication factor C 86.1 5.5 0.00012 36.9 9.4 95 169-265 125-223 (337)
54 PF05496 RuvB_N: Holliday junc 86.0 7.6 0.00017 34.0 9.3 135 111-265 60-218 (233)
55 PRK00149 dnaA chromosomal repl 86.0 3.4 7.3E-05 40.4 8.1 100 161-263 204-317 (450)
56 PRK14963 DNA polymerase III su 85.5 6.6 0.00014 38.9 9.9 96 168-265 115-214 (504)
57 PRK06645 DNA polymerase III su 85.5 4 8.7E-05 40.4 8.3 94 168-263 127-224 (507)
58 PRK14087 dnaA chromosomal repl 85.0 3.5 7.6E-05 40.3 7.6 100 170-269 207-320 (450)
59 PRK14961 DNA polymerase III su 84.8 6.4 0.00014 37.2 9.1 94 169-264 119-216 (363)
60 PF13401 AAA_22: AAA domain; P 84.4 2.2 4.7E-05 33.4 5.0 45 160-206 77-125 (131)
61 PRK07003 DNA polymerase III su 84.3 4.7 0.0001 41.7 8.3 97 169-267 119-220 (830)
62 PRK12422 chromosomal replicati 84.1 4.5 9.7E-05 39.5 7.9 96 162-260 196-305 (445)
63 PRK08769 DNA polymerase III su 83.5 7.7 0.00017 36.0 8.8 93 169-269 113-209 (319)
64 PRK08903 DnaA regulatory inact 83.4 5.1 0.00011 34.9 7.4 99 170-270 91-201 (227)
65 PRK05642 DNA replication initi 83.3 7.5 0.00016 34.3 8.4 92 172-265 100-205 (234)
66 PRK14958 DNA polymerase III su 83.2 8.2 0.00018 38.3 9.4 96 168-265 118-217 (509)
67 COG3267 ExeA Type II secretory 83.2 34 0.00073 30.6 12.4 169 100-271 48-248 (269)
68 TIGR02397 dnaX_nterm DNA polym 83.1 6.9 0.00015 36.6 8.7 97 169-267 117-217 (355)
69 COG1474 CDC6 Cdc6-related prot 82.8 44 0.00096 31.7 14.2 234 106-340 45-334 (366)
70 PRK14088 dnaA chromosomal repl 82.4 6.7 0.00014 38.2 8.4 98 162-261 187-298 (440)
71 PF13271 DUF4062: Domain of un 82.3 5.2 0.00011 29.0 5.8 66 17-84 1-67 (83)
72 PRK08116 hypothetical protein; 81.8 1.8 3.9E-05 39.1 3.9 45 161-206 171-220 (268)
73 PRK07940 DNA polymerase III su 81.7 11 0.00023 36.2 9.3 93 169-268 117-213 (394)
74 PRK04132 replication factor C 81.5 16 0.00034 38.6 11.0 95 169-265 630-728 (846)
75 PRK06620 hypothetical protein; 80.5 4.9 0.00011 35.0 6.1 90 170-263 86-184 (214)
76 PHA02544 44 clamp loader, smal 79.3 16 0.00034 33.6 9.5 67 169-235 100-171 (316)
77 TIGR02903 spore_lon_C ATP-depe 76.1 17 0.00036 37.2 9.2 110 160-271 283-398 (615)
78 COG1373 Predicted ATPase (AAA+ 75.5 11 0.00023 36.3 7.3 62 169-232 94-162 (398)
79 PRK14949 DNA polymerase III su 75.3 17 0.00038 38.4 9.1 98 167-266 117-218 (944)
80 PRK06090 DNA polymerase III su 74.7 24 0.00052 32.8 9.1 92 169-270 108-203 (319)
81 KOG2543 Origin recognition com 72.7 9.5 0.00021 36.0 5.9 129 105-236 32-192 (438)
82 PRK08691 DNA polymerase III su 72.5 16 0.00035 37.5 8.0 96 168-265 118-217 (709)
83 PRK14956 DNA polymerase III su 72.4 17 0.00037 35.7 7.8 94 168-263 120-217 (484)
84 PRK08451 DNA polymerase III su 72.0 30 0.00064 34.6 9.6 95 169-265 117-215 (535)
85 PF02463 SMC_N: RecF/RecN/SMC 71.8 4.1 8.8E-05 35.3 3.2 45 169-213 158-205 (220)
86 PRK06964 DNA polymerase III su 71.1 31 0.00068 32.3 9.1 90 169-268 132-225 (342)
87 PRK14957 DNA polymerase III su 70.4 20 0.00044 35.9 8.1 99 168-268 118-221 (546)
88 PRK03992 proteasome-activating 70.0 46 0.00099 31.8 10.2 89 168-261 223-336 (389)
89 TIGR00362 DnaA chromosomal rep 69.3 23 0.0005 34.0 8.1 101 161-264 192-306 (405)
90 COG0542 clpA ATP-binding subun 69.2 6.7 0.00014 40.7 4.5 81 111-193 531-618 (786)
91 PRK09111 DNA polymerase III su 69.1 26 0.00057 35.6 8.7 96 169-266 132-231 (598)
92 PRK07399 DNA polymerase III su 69.1 35 0.00075 31.6 8.9 93 169-267 124-220 (314)
93 PRK14955 DNA polymerase III su 67.8 11 0.00023 36.3 5.4 93 169-263 127-223 (397)
94 PRK06871 DNA polymerase III su 67.5 49 0.0011 30.8 9.5 91 169-266 107-201 (325)
95 PRK07993 DNA polymerase III su 67.0 69 0.0015 29.9 10.5 91 168-265 107-201 (334)
96 PRK14959 DNA polymerase III su 67.0 23 0.00049 36.1 7.6 100 168-269 118-222 (624)
97 PRK14951 DNA polymerase III su 66.6 39 0.00085 34.4 9.3 95 169-265 124-222 (618)
98 PRK14965 DNA polymerase III su 66.0 29 0.00063 35.1 8.3 92 169-262 119-214 (576)
99 PRK08181 transposase; Validate 65.9 9.4 0.0002 34.5 4.4 38 169-207 167-209 (269)
100 PRK14970 DNA polymerase III su 65.9 50 0.0011 31.1 9.6 93 169-263 108-204 (367)
101 PRK14971 DNA polymerase III su 65.8 26 0.00056 35.8 7.9 93 169-263 121-217 (614)
102 KOG0989 Replication factor C, 65.4 19 0.0004 33.1 6.0 88 172-261 132-223 (346)
103 PRK14950 DNA polymerase III su 65.3 38 0.00083 34.3 9.0 95 169-265 120-218 (585)
104 PRK14962 DNA polymerase III su 65.0 30 0.00064 34.1 7.9 101 168-270 116-221 (472)
105 cd00860 ThrRS_anticodon ThrRS 64.5 26 0.00057 25.1 5.9 60 16-80 2-61 (91)
106 PRK06305 DNA polymerase III su 63.6 41 0.0009 32.9 8.7 94 168-263 120-217 (451)
107 PRK07764 DNA polymerase III su 63.4 36 0.00078 36.0 8.6 94 168-263 119-216 (824)
108 PRK14969 DNA polymerase III su 63.0 33 0.00072 34.3 8.0 94 168-263 118-215 (527)
109 CHL00176 ftsH cell division pr 62.5 74 0.0016 32.7 10.4 95 162-260 268-386 (638)
110 TIGR03346 chaperone_ClpB ATP-d 62.2 22 0.00049 37.8 7.0 33 161-193 658-692 (852)
111 COG0396 sufC Cysteine desulfur 62.0 23 0.00049 31.2 5.7 64 156-219 149-216 (251)
112 PF00004 AAA: ATPase family as 61.5 27 0.00059 26.8 5.9 12 169-180 58-69 (132)
113 KOG0741 AAA+-type ATPase [Post 59.5 30 0.00064 34.4 6.5 86 168-258 597-704 (744)
114 cd00738 HGTP_anticodon HGTP an 59.0 34 0.00075 24.6 5.8 61 16-80 2-64 (94)
115 PRK07132 DNA polymerase III su 58.7 67 0.0015 29.5 8.6 95 169-271 90-188 (299)
116 PF03129 HGTP_anticodon: Antic 58.7 26 0.00057 25.5 5.1 47 29-79 15-61 (94)
117 TIGR01241 FtsH_fam ATP-depende 58.0 82 0.0018 31.2 9.8 98 167-268 145-267 (495)
118 PRK14954 DNA polymerase III su 57.6 50 0.0011 33.7 8.2 93 169-263 127-223 (620)
119 PF12802 MarR_2: MarR family; 57.1 28 0.0006 23.0 4.5 47 294-340 2-54 (62)
120 PRK07133 DNA polymerase III su 57.0 68 0.0015 33.4 9.1 99 168-268 117-220 (725)
121 PRK12377 putative replication 56.7 17 0.00036 32.4 4.3 93 105-205 103-204 (248)
122 PF13730 HTH_36: Helix-turn-he 56.7 31 0.00068 22.3 4.6 44 294-337 2-55 (55)
123 PRK14953 DNA polymerase III su 56.1 75 0.0016 31.4 9.0 96 168-265 118-217 (486)
124 TIGR03345 VI_ClpV1 type VI sec 54.7 14 0.00029 39.3 3.8 33 161-193 659-693 (852)
125 cd00561 CobA_CobO_BtuR ATP:cor 54.5 19 0.00041 29.7 3.9 46 163-208 88-139 (159)
126 PRK14948 DNA polymerase III su 53.6 86 0.0019 32.1 9.2 95 169-265 121-219 (620)
127 PRK05896 DNA polymerase III su 53.4 50 0.0011 33.5 7.3 99 170-270 120-223 (605)
128 PRK10865 protein disaggregatio 52.8 31 0.00068 36.7 6.2 33 161-193 661-695 (857)
129 TIGR02639 ClpA ATP-dependent C 52.4 24 0.00053 36.8 5.2 34 160-193 543-578 (731)
130 TIGR01610 phage_O_Nterm phage 51.6 64 0.0014 23.9 6.1 58 290-347 18-89 (95)
131 PRK06647 DNA polymerase III su 51.6 99 0.0022 31.2 9.2 96 168-265 118-217 (563)
132 PRK06526 transposase; Provisio 51.5 20 0.00043 32.1 3.9 38 169-207 159-201 (254)
133 PRK08058 DNA polymerase III su 51.1 75 0.0016 29.6 7.8 67 169-235 110-180 (329)
134 PRK09183 transposase/IS protei 50.2 33 0.00072 30.7 5.1 37 169-206 164-205 (259)
135 PTZ00454 26S protease regulato 49.6 97 0.0021 29.8 8.4 70 167-237 236-329 (398)
136 cd00858 GlyRS_anticodon GlyRS 49.4 60 0.0013 25.1 5.9 62 14-81 25-88 (121)
137 PRK14952 DNA polymerase III su 47.3 1.1E+02 0.0024 31.0 8.8 94 168-263 117-214 (584)
138 PRK08972 fliI flagellum-specif 47.3 27 0.00058 34.0 4.2 19 162-180 243-263 (444)
139 PF06144 DNA_pol3_delta: DNA p 47.2 1E+02 0.0022 25.0 7.4 95 169-266 57-164 (172)
140 PRK08927 fliI flagellum-specif 46.6 19 0.00041 35.0 3.1 19 162-180 239-259 (442)
141 PRK09376 rho transcription ter 46.6 22 0.00048 34.0 3.5 69 111-180 179-267 (416)
142 PRK05563 DNA polymerase III su 46.4 1.5E+02 0.0032 30.0 9.5 95 168-264 118-216 (559)
143 COG1484 DnaC DNA replication p 45.5 27 0.00059 31.2 3.8 67 106-180 108-178 (254)
144 PF08132 AdoMetDC_leader: S-ad 45.3 14 0.0003 23.6 1.3 24 5-28 10-33 (54)
145 cd01132 F1_ATPase_alpha F1 ATP 43.9 48 0.001 30.0 5.1 23 167-189 159-181 (274)
146 TIGR02880 cbbX_cfxQ probable R 43.7 1.1E+02 0.0023 27.9 7.5 69 170-238 122-209 (284)
147 KOG2227 Pre-initiation complex 43.0 1.5E+02 0.0031 29.2 8.3 183 88-271 159-375 (529)
148 cd01133 F1-ATPase_beta F1 ATP 43.0 54 0.0012 29.7 5.3 20 161-180 152-174 (274)
149 TIGR02639 ClpA ATP-dependent C 41.2 81 0.0018 33.0 7.0 21 217-237 338-358 (731)
150 PF13177 DNA_pol3_delta2: DNA 41.0 38 0.00083 27.8 3.8 56 169-224 102-161 (162)
151 cd02426 Pol_gamma_b_Cterm C-te 40.7 26 0.00056 27.7 2.6 26 27-52 41-66 (128)
152 PRK02118 V-type ATP synthase s 40.4 20 0.00043 34.7 2.2 20 161-180 220-242 (436)
153 TIGR00602 rad24 checkpoint pro 40.3 3.9E+02 0.0085 27.5 11.4 70 168-237 194-287 (637)
154 PF13545 HTH_Crp_2: Crp-like h 39.8 51 0.0011 22.8 3.8 38 312-349 28-70 (76)
155 cd01135 V_A-ATPase_B V/A-type 39.8 25 0.00055 31.8 2.7 20 161-180 155-177 (276)
156 PF02310 B12-binding: B12 bind 39.4 1.4E+02 0.0031 22.5 6.7 79 30-117 15-94 (121)
157 cd01128 rho_factor Transcripti 39.3 40 0.00086 30.1 3.9 14 167-180 101-114 (249)
158 CHL00095 clpC Clp protease ATP 39.2 56 0.0012 34.7 5.6 34 160-193 601-636 (821)
159 COG1058 CinA Predicted nucleot 39.0 66 0.0014 28.8 5.1 24 27-50 18-41 (255)
160 PRK13539 cytochrome c biogenes 38.8 65 0.0014 27.5 5.1 62 161-225 137-202 (207)
161 KOG2170 ATPase of the AAA+ sup 38.4 78 0.0017 29.2 5.4 25 169-193 178-203 (344)
162 PRK09280 F0F1 ATP synthase sub 38.3 23 0.0005 34.6 2.3 20 161-180 227-249 (463)
163 COG0512 PabA Anthranilate/para 37.9 82 0.0018 26.8 5.2 49 26-84 8-58 (191)
164 TIGR01041 ATP_syn_B_arch ATP s 37.7 26 0.00057 34.2 2.6 20 161-180 227-249 (458)
165 PRK07952 DNA replication prote 37.6 34 0.00075 30.4 3.2 44 161-205 155-203 (244)
166 COG4271 Predicted nucleotide-b 36.7 99 0.0021 26.5 5.4 61 17-82 84-146 (233)
167 TIGR03305 alt_F1F0_F1_bet alte 36.6 26 0.00056 34.2 2.3 20 161-180 221-243 (449)
168 TIGR01128 holA DNA polymerase 36.6 2.7E+02 0.0058 25.0 9.1 96 168-265 45-150 (302)
169 PRK05986 cob(I)alamin adenolsy 36.3 75 0.0016 27.1 4.8 47 162-208 107-159 (191)
170 KOG0066 eIF2-interacting prote 36.0 2E+02 0.0044 28.1 8.0 50 161-211 714-765 (807)
171 TIGR01501 MthylAspMutase methy 35.7 2.3E+02 0.0049 22.6 8.2 62 32-98 18-79 (134)
172 PRK06936 type III secretion sy 35.6 37 0.0008 33.0 3.2 19 162-180 243-263 (439)
173 PF03969 AFG1_ATPase: AFG1-lik 35.4 92 0.002 29.5 5.8 49 158-208 116-168 (362)
174 TIGR00708 cobA cob(I)alamin ad 34.8 51 0.0011 27.6 3.5 46 163-208 90-141 (173)
175 COG2109 BtuR ATP:corrinoid ade 34.6 69 0.0015 27.3 4.2 48 161-208 113-166 (198)
176 TIGR00611 recf recF protein. A 34.4 67 0.0014 30.4 4.7 44 167-211 300-345 (365)
177 cd00861 ProRS_anticodon_short 34.3 1.1E+02 0.0023 22.0 5.0 48 29-80 17-64 (94)
178 PRK11034 clpA ATP-dependent Cl 34.3 61 0.0013 34.0 4.8 33 161-193 548-582 (758)
179 cd01134 V_A-ATPase_A V/A-type 34.1 39 0.00085 31.8 3.0 20 161-180 244-265 (369)
180 PRK08939 primosomal protein Dn 34.1 45 0.00098 30.7 3.5 37 169-205 217-259 (306)
181 KOG2035 Replication factor C, 33.8 1.7E+02 0.0037 26.8 6.7 97 170-268 127-229 (351)
182 PRK07414 cob(I)yrinic acid a,c 33.7 62 0.0014 27.2 3.9 40 169-208 115-159 (178)
183 COG4618 ArpD ABC-type protease 33.4 60 0.0013 32.1 4.2 52 161-212 482-537 (580)
184 TIGR03496 FliI_clade1 flagella 32.9 41 0.00088 32.5 3.0 19 162-180 218-238 (411)
185 PRK14700 recombination factor 32.9 1.6E+02 0.0035 27.0 6.6 67 195-261 5-80 (300)
186 PRK05688 fliI flagellum-specif 32.6 44 0.00095 32.6 3.2 19 162-180 249-269 (451)
187 PF00006 ATP-synt_ab: ATP synt 32.0 20 0.00043 31.2 0.7 14 167-180 103-116 (215)
188 PLN03210 Resistant to P. syrin 31.9 23 0.0005 39.1 1.3 41 79-120 184-226 (1153)
189 PRK09281 F0F1 ATP synthase sub 31.7 75 0.0016 31.5 4.7 13 168-180 253-265 (502)
190 smart00419 HTH_CRP helix_turn_ 30.5 1.2E+02 0.0027 18.4 4.2 22 326-347 27-48 (48)
191 PRK08699 DNA polymerase III su 30.2 1.2E+02 0.0025 28.3 5.5 86 169-265 114-203 (325)
192 PF09837 DUF2064: Uncharacteri 30.1 2.5E+02 0.0055 21.8 6.7 76 12-98 7-85 (122)
193 TIGR00962 atpA proton transloc 29.7 90 0.002 31.0 4.9 14 167-180 251-264 (501)
194 COG0400 Predicted esterase [Ge 29.4 1.8E+02 0.0039 25.1 6.2 58 10-69 141-200 (207)
195 TIGR01039 atpD ATP synthase, F 29.3 37 0.0008 33.2 2.1 20 161-180 226-248 (461)
196 PRK12597 F0F1 ATP synthase sub 29.0 56 0.0012 32.0 3.3 20 161-180 226-248 (461)
197 PRK13343 F0F1 ATP synthase sub 29.0 1E+02 0.0023 30.5 5.1 19 162-180 245-265 (502)
198 cd03364 TOPRIM_DnaG_primases T 28.7 67 0.0015 22.6 2.9 31 17-47 45-75 (79)
199 TIGR00334 5S_RNA_mat_M5 ribonu 28.6 53 0.0011 27.5 2.6 43 29-73 35-77 (174)
200 PF13304 AAA_21: AAA domain; P 28.3 65 0.0014 27.6 3.4 39 171-209 259-301 (303)
201 PF04665 Pox_A32: Poxvirus A32 28.3 80 0.0017 28.0 3.9 12 169-180 98-109 (241)
202 PF05014 Nuc_deoxyrib_tr: Nucl 28.3 81 0.0018 23.9 3.6 67 29-96 13-87 (113)
203 TIGR01026 fliI_yscN ATPase Fli 27.6 63 0.0014 31.5 3.4 14 167-180 251-264 (440)
204 TIGR03498 FliI_clade3 flagella 27.5 62 0.0013 31.3 3.3 20 161-180 220-241 (418)
205 PF05621 TniB: Bacterial TniB 27.5 4.9E+02 0.011 24.0 9.8 182 86-267 44-260 (302)
206 TIGR00418 thrS threonyl-tRNA s 27.4 1.2E+02 0.0026 30.5 5.5 62 14-80 469-530 (563)
207 CHL00059 atpA ATP synthase CF1 27.3 84 0.0018 31.0 4.1 14 167-180 231-244 (485)
208 PRK04196 V-type ATP synthase s 27.0 89 0.0019 30.7 4.3 20 161-180 229-251 (460)
209 PTZ00202 tuzin; Provisional 26.8 2.8E+02 0.006 27.5 7.3 152 79-234 262-431 (550)
210 cd03216 ABC_Carb_Monos_I This 26.8 1.2E+02 0.0026 24.7 4.6 52 159-210 90-145 (163)
211 TIGR00767 rho transcription te 26.3 1E+02 0.0022 29.7 4.4 14 167-180 253-266 (415)
212 PRK07960 fliI flagellum-specif 26.0 51 0.0011 32.2 2.4 14 167-180 263-276 (455)
213 PRK07276 DNA polymerase III su 26.0 4.3E+02 0.0092 24.2 8.3 66 168-234 103-172 (290)
214 cd01423 MGS_CPS_I_III Methylgl 25.6 94 0.002 23.7 3.5 29 18-48 3-31 (116)
215 TIGR03324 alt_F1F0_F1_al alter 25.6 93 0.002 30.8 4.1 20 161-180 244-265 (497)
216 cd03228 ABCC_MRP_Like The MRP 25.4 1.7E+02 0.0038 23.9 5.3 60 160-221 105-167 (171)
217 CHL00181 cbbX CbbX; Provisiona 25.4 3.6E+02 0.0078 24.5 7.7 70 170-239 123-211 (287)
218 PRK06793 fliI flagellum-specif 24.4 1.6E+02 0.0034 28.7 5.4 14 167-180 244-257 (432)
219 TIGR02324 CP_lyasePhnL phospho 24.3 1.1E+02 0.0023 26.4 4.0 60 161-221 159-222 (224)
220 PRK07452 DNA polymerase III su 24.3 4.2E+02 0.009 24.3 8.2 95 169-265 61-169 (326)
221 cd03247 ABCC_cytochrome_bd The 23.8 1.8E+02 0.0038 24.0 5.1 60 160-221 107-169 (178)
222 PF00448 SRP54: SRP54-type pro 23.3 2.7E+02 0.0058 23.7 6.1 40 166-207 112-152 (196)
223 PRK07594 type III secretion sy 23.2 92 0.002 30.3 3.6 19 162-180 236-256 (433)
224 PRK09099 type III secretion sy 23.1 72 0.0016 31.1 2.8 19 162-180 244-264 (441)
225 PF13191 AAA_16: AAA ATPase do 23.1 45 0.00098 27.4 1.3 37 81-117 2-40 (185)
226 cd03244 ABCC_MRP_domain2 Domai 23.0 1.8E+02 0.0039 24.9 5.2 60 160-221 148-210 (221)
227 PRK08149 ATP synthase SpaL; Va 22.7 54 0.0012 31.8 1.9 14 167-180 239-252 (428)
228 cd01136 ATPase_flagellum-secre 22.7 63 0.0014 30.1 2.3 14 167-180 157-170 (326)
229 PRK10536 hypothetical protein; 22.6 1.4E+02 0.0031 26.8 4.4 41 165-207 169-213 (262)
230 PF02572 CobA_CobO_BtuR: ATP:c 22.4 86 0.0019 26.2 2.8 40 169-208 96-140 (172)
231 PRK06921 hypothetical protein; 22.2 65 0.0014 29.0 2.2 38 169-206 177-224 (266)
232 cd03251 ABCC_MsbA MsbA is an e 21.9 1.9E+02 0.0042 24.9 5.2 60 160-221 147-209 (234)
233 cd00859 HisRS_anticodon HisRS 21.8 2.2E+02 0.0048 19.7 4.7 33 17-50 3-35 (91)
234 PRK09194 prolyl-tRNA synthetas 21.8 2E+02 0.0043 29.1 5.8 41 12-52 465-507 (565)
235 TIGR03497 FliI_clade2 flagella 21.8 93 0.002 30.1 3.3 19 162-180 218-238 (413)
236 PRK06820 type III secretion sy 21.7 84 0.0018 30.6 3.0 19 162-180 244-264 (440)
237 PRK10733 hflB ATP-dependent me 21.7 5.5E+02 0.012 26.4 9.1 71 167-238 242-336 (644)
238 cd03230 ABC_DR_subfamily_A Thi 21.7 1.6E+02 0.0034 24.2 4.4 61 160-221 104-168 (173)
239 TIGR03740 galliderm_ABC gallid 21.6 1.6E+02 0.0035 25.2 4.6 51 161-211 134-188 (223)
240 cd02042 ParA ParA and ParB of 21.5 3.3E+02 0.0071 19.8 6.6 63 18-82 3-74 (104)
241 COG1168 MalY Bifunctional PLP- 21.5 1.3E+02 0.0028 28.6 4.0 47 61-107 148-196 (388)
242 CHL00201 syh histidine-tRNA sy 21.4 1.9E+02 0.004 28.1 5.4 61 14-79 324-384 (430)
243 PF07693 KAP_NTPase: KAP famil 21.3 5.1E+02 0.011 23.5 8.1 50 29-79 2-59 (325)
244 COG1658 Small primase-like pro 21.2 1.1E+02 0.0024 24.2 3.0 55 16-72 30-84 (127)
245 TIGR02881 spore_V_K stage V sp 21.2 5.7E+02 0.012 22.5 8.2 68 171-238 107-192 (261)
246 PRK08485 DNA polymerase III su 21.2 4.4E+02 0.0096 22.7 6.9 62 174-235 59-137 (206)
247 cd04904 ACT_AAAH ACT domain of 21.2 2E+02 0.0042 20.0 4.1 31 9-42 36-66 (74)
248 cd03215 ABC_Carb_Monos_II This 21.0 1.7E+02 0.0037 24.2 4.5 51 160-210 113-167 (182)
249 PRK12325 prolyl-tRNA synthetas 21.0 2.4E+02 0.0052 27.4 6.0 63 15-81 345-409 (439)
250 COG3355 Predicted transcriptio 20.8 4.2E+02 0.009 20.9 6.1 55 284-340 15-75 (126)
251 cd01424 MGS_CPS_II Methylglyox 20.7 2.3E+02 0.0049 21.3 4.7 60 18-79 3-75 (110)
252 cd00532 MGS-like MGS-like doma 20.7 3.1E+02 0.0067 20.7 5.5 61 18-80 2-77 (112)
253 KOG0062 ATPase component of AB 20.6 2.8E+02 0.0062 27.6 6.2 47 162-210 493-542 (582)
254 PRK13543 cytochrome c biogenes 20.4 1.6E+02 0.0035 25.1 4.3 53 161-213 147-203 (214)
255 PRK14938 Ser-tRNA(Thr) hydrola 20.2 2.2E+02 0.0048 27.1 5.3 59 15-78 274-332 (387)
256 PRK04192 V-type ATP synthase s 20.2 1.1E+02 0.0024 30.9 3.5 24 102-125 228-251 (586)
257 PF02562 PhoH: PhoH-like prote 20.1 1.5E+02 0.0033 25.6 3.9 36 170-207 120-156 (205)
258 PF02082 Rrf2: Transcriptional 20.1 3.3E+02 0.0071 19.3 5.4 42 299-340 10-58 (83)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-68 Score=566.54 Aligned_cols=348 Identities=43% Similarity=0.676 Sum_probs=311.4
Q ss_pred CCCCCCCCCCCCCCceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccC
Q 045634 1 MASSSSSSSLTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKD 80 (353)
Q Consensus 1 m~~~~~~~~~~~~~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 80 (353)
||+|| |+++.|+|||||||||+|+|++|++||+++|.++||++|+|+ ++++|+.|.+++.+||++|+++|+|||++
T Consensus 1 ~~~~~---~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ 76 (1153)
T PLN03210 1 MASSS---SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKN 76 (1153)
T ss_pred CCCCC---CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCC
Confidence 55554 334679999999999999999999999999999999999998 79999999999999999999999999999
Q ss_pred cccchhhHhhhhhhhhccccCCcEEEeEEeecCCcccccccccccccceecccCC-chHHHHHHHHHHhhccCCCCCchH
Q 045634 81 YASSKWCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHENNF-PDKVQKWRDALTEASNLSGYDSTE 159 (353)
Q Consensus 81 ~~~s~~~~~El~~~~~~~~~~~~~vipI~ggVgkt~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~ 159 (353)
|++|+||++||++|++|.+..++.|+||||+|+|++|++|+|.|+++|..+.... .+++++|++||.+++++.|++...
T Consensus 77 ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~ 156 (1153)
T PLN03210 77 YASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQN 156 (1153)
T ss_pred cccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCC
Confidence 9999999999999999998889999999999999999999999999998876543 478999999999999999976432
Q ss_pred ---H----------------------------------------------------------------------------
Q 045634 160 ---S---------------------------------------------------------------------------- 160 (353)
Q Consensus 160 ---~---------------------------------------------------------------------------- 160 (353)
+
T Consensus 157 ~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~ 236 (1153)
T PLN03210 157 WPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ 236 (1153)
T ss_pred CCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC
Confidence 0
Q ss_pred ---------------------------------------------------HHHHHHhcCceeeEeccccchHHHHHHHH
Q 045634 161 ---------------------------------------------------RIKKRLQLMKVLIVLDDVHDEFTELKSLA 189 (353)
Q Consensus 161 ---------------------------------------------------~l~~~L~~kr~LlVLDdv~~~~~~~~~l~ 189 (353)
.++++|++||+||||||||+ ..+|+.+.
T Consensus 237 g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~-~~~l~~L~ 315 (1153)
T PLN03210 237 SSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDD-QDVLDALA 315 (1153)
T ss_pred eEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCC-HHHHHHHH
Confidence 02344567899999999999 99999998
Q ss_pred hhcC-CCCCcEEEEEeCccccccccCccceEEeCCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 045634 190 RRLQ-FSGRSRIIITSRDKGVLDKCGVNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVL 268 (353)
Q Consensus 190 ~~~~-~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 268 (353)
.... +++||+||||||++.++..++..++|+|+.|+.++|++||+++||+...+++++.+++++|+++|+|+||||+++
T Consensus 316 ~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vl 395 (1153)
T PLN03210 316 GQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVL 395 (1153)
T ss_pred hhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 8777 889999999999999998887889999999999999999999999887777789999999999999999999999
Q ss_pred hhc-----------cccccccCCCchHHHHHHhhhccCCH-hHHHHHhhhhccCCCCCHHHHHHHHhcC-----chHHHH
Q 045634 269 ANN-----------NGKLMKLISEPNIYNVLKISYDELNL-EEKKTFLDIACFFTGEDIDFVRRIRDDP-----SSLDTF 331 (353)
Q Consensus 269 g~~-----------~~~~l~~~~~~~v~~~l~~sy~~L~~-~~k~~fl~la~fp~~~~~~~l~~~w~~~-----~~l~~L 331 (353)
|++ .+.+++...+..|..+|++||+.|++ ..|.||++|||||.+.+.+.+..++..+ ..++.|
T Consensus 396 gs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L 475 (1153)
T PLN03210 396 GSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNL 475 (1153)
T ss_pred HHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHH
Confidence 999 34445555667899999999999987 5999999999999999988877766654 679999
Q ss_pred hhCCCcEeeCCeEEechhhhhC
Q 045634 332 VDKSLITIFYNELQMHDLLQEM 353 (353)
Q Consensus 332 ~~~sLl~~~~~~~~mHdlv~d~ 353 (353)
+++||++..+++++||||+|+|
T Consensus 476 ~~ksLi~~~~~~~~MHdLl~~~ 497 (1153)
T PLN03210 476 VDKSLIHVREDIVEMHSLLQEM 497 (1153)
T ss_pred HhcCCEEEcCCeEEhhhHHHHH
Confidence 9999999888899999999986
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-40 Score=335.14 Aligned_cols=248 Identities=25% Similarity=0.333 Sum_probs=209.5
Q ss_pred EEEeEEe--ecCCccccc--------cccccc-ccceecccCCchHHHHHHHHHHhhccCC-CCCc-----hHHHHHHHH
Q 045634 104 IVIPVFY--QVDPSDVRK--------QRRSFG-EAFVHHENNFPDKVQKWRDALTEASNLS-GYDS-----TESRIKKRL 166 (353)
Q Consensus 104 ~vipI~g--gVgkt~~~~--------~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~-----~~~~l~~~L 166 (353)
.++.|+| |||||++.+ ..++|+ .+|+.+++.+ .....|.+++..+.... .+.. ....|.+.|
T Consensus 180 ~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f-~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L 258 (889)
T KOG4658|consen 180 GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEF-TTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLL 258 (889)
T ss_pred CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccc-cHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHh
Confidence 7899998 999995433 457888 7777777655 66788888888776522 2322 226889999
Q ss_pred hcCceeeEeccccchHHHHHHHHhhcC-CCCCcEEEEEeCccccccc-cCccceEEeCCCChhHHHHHHHHhhhccC-CC
Q 045634 167 QLMKVLIVLDDVHDEFTELKSLARRLQ-FSGRSRIIITSRDKGVLDK-CGVNNMYEVKGLKYNKALELFCRKAFRET-NC 243 (353)
Q Consensus 167 ~~kr~LlVLDdv~~~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~ 243 (353)
++|||||||||||+ ...|+.+..++| ...||+|++|||++.|+.. +++...++++.|+.+|||.||++.+|... ..
T Consensus 259 ~~krfllvLDDIW~-~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~ 337 (889)
T KOG4658|consen 259 EGKRFLLVLDDIWE-EVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGS 337 (889)
T ss_pred ccCceEEEEecccc-cccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccc
Confidence 99999999999999 888999999999 7789999999999999988 88888999999999999999999998764 44
Q ss_pred CccHHHHHHHHHHHcCCChHHHHHHhhc-----ccccccc-------C-------CCchHHHHHHhhhccCCHhHHHHHh
Q 045634 244 SHDLLELSEEVVRHADGNPLALEVLANN-----NGKLMKL-------I-------SEPNIYNVLKISYDELNLEEKKTFL 304 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal~~~g~~-----~~~~l~~-------~-------~~~~v~~~l~~sy~~L~~~~k~~fl 304 (353)
.+..+++|++++++|+|+|||++++|+. ....|+. . ..+.+..++++||+.||++.|.||+
T Consensus 338 ~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFL 417 (889)
T KOG4658|consen 338 HPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFL 417 (889)
T ss_pred cccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHH
Confidence 4558999999999999999999999999 2223332 1 1256889999999999999999999
Q ss_pred hhhccCCCC--CHHHHHHHHhcC-----------------chHHHHhhCCCcEeeC-----CeEEechhhhhC
Q 045634 305 DIACFFTGE--DIDFVRRIRDDP-----------------SSLDTFVDKSLITIFY-----NELQMHDLLQEM 353 (353)
Q Consensus 305 ~la~fp~~~--~~~~l~~~w~~~-----------------~~l~~L~~~sLl~~~~-----~~~~mHdlv~d~ 353 (353)
|||+||+++ +++.|+.+|+|+ .++.+|+++||+.... ..|.|||+||||
T Consensus 418 ycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~ 490 (889)
T KOG4658|consen 418 YCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREM 490 (889)
T ss_pred hhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHH
Confidence 999999999 568999999987 8999999999999873 459999999986
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=5.9e-37 Score=252.28 Aligned_cols=138 Identities=29% Similarity=0.485 Sum_probs=126.3
Q ss_pred CCCCCCCCCceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccch
Q 045634 6 SSSSLTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSK 85 (353)
Q Consensus 6 ~~~~~~~~~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~ 85 (353)
.+||++.+.+|||||||+|+|++++|++||+.+|+++||+||+|++++.+|+.|.++|.+||++|+++|+|||++|++|.
T Consensus 17 ~~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~ 96 (187)
T PLN03194 17 YPSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESY 96 (187)
T ss_pred cccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccch
Confidence 35677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhhhhhccccCCcEEEeEEeecCCccccccc-ccccccceecccCCchHHHHHHHHHHhhccCCCCCc
Q 045634 86 WCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRKQR-RSFGEAFVHHENNFPDKVQKWRDALTEASNLSGYDS 157 (353)
Q Consensus 86 ~~~~El~~~~~~~~~~~~~vipI~ggVgkt~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 157 (353)
||++||++|+++. ..|+||||+|.|+++++|. +. ...++++.|++||.+++++.|++.
T Consensus 97 WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~----------~~~e~v~~Wr~AL~~va~l~G~~~ 155 (187)
T PLN03194 97 FCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT----------CPDEEIRRFNWALEEAKYTVGLTF 155 (187)
T ss_pred hHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC----------CCHHHHHHHHHHHHHHhccccccC
Confidence 9999999999864 4799999999999999973 22 234789999999999999999754
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.98 E-value=4.5e-32 Score=248.26 Aligned_cols=236 Identities=25% Similarity=0.373 Sum_probs=166.8
Q ss_pred HhhhhhhhhccccCCcEEEeEEe--ecCCccccc-------ccccccccceecccCCchHHHHHHHHHHhhccCC-----
Q 045634 88 LNELVNILDCKKMNGKIVIPVFY--QVDPSDVRK-------QRRSFGEAFVHHENNFPDKVQKWRDALTEASNLS----- 153 (353)
Q Consensus 88 ~~El~~~~~~~~~~~~~vipI~g--gVgkt~~~~-------~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 153 (353)
++++...+.... .+..++.|.| |+|||.+.. ....|+..+|..........+...+++.++....
T Consensus 5 ~~~l~~~L~~~~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (287)
T PF00931_consen 5 IEKLKDWLLDNS-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISD 83 (287)
T ss_dssp HHHHHHHHHTTT-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSC
T ss_pred HHHHHHHhhCCC-CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344445554433 6678999999 999994432 3567774444333333333555566666655431
Q ss_pred CCC--chHHHHHHHHhcCceeeEeccccchHHHHHHHHhhcC-CCCCcEEEEEeCccccccccCc-cceEEeCCCChhHH
Q 045634 154 GYD--STESRIKKRLQLMKVLIVLDDVHDEFTELKSLARRLQ-FSGRSRIIITSRDKGVLDKCGV-NNMYEVKGLKYNKA 229 (353)
Q Consensus 154 g~~--~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~~~~-~~~~~l~~L~~~ea 229 (353)
..+ .....+++.|+++++||||||||+ ...|+.+...++ +..||+||||||++.++..++. ...+++++|+.+||
T Consensus 84 ~~~~~~~~~~l~~~L~~~~~LlVlDdv~~-~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea 162 (287)
T PF00931_consen 84 PKDIEELQDQLRELLKDKRCLLVLDDVWD-EEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEA 162 (287)
T ss_dssp CSSHHHHHHHHHHHHCCTSEEEEEEEE-S-HHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHH
T ss_pred ccccccccccchhhhccccceeeeeeecc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 112 222789999999999999999999 889988887777 7779999999999999877754 67899999999999
Q ss_pred HHHHHHhhhccC-CCCccHHHHHHHHHHHcCCChHHHHHHhhc-----ccccccc-----------C--CCchHHHHHHh
Q 045634 230 LELFCRKAFRET-NCSHDLLELSEEVVRHADGNPLALEVLANN-----NGKLMKL-----------I--SEPNIYNVLKI 290 (353)
Q Consensus 230 ~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~c~glPLal~~~g~~-----~~~~l~~-----------~--~~~~v~~~l~~ 290 (353)
++||++.++... ...+..++.+++|++.|+|+||||+++|++ ....|.. . ....+..++.+
T Consensus 163 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~ 242 (287)
T PF00931_consen 163 LELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALEL 242 (287)
T ss_dssp HHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 999999997765 334456778999999999999999999998 1111111 1 24679999999
Q ss_pred hhccCCHhHHHHHhhhhccCCCC--CHHHHHHHHhcC
Q 045634 291 SYDELNLEEKKTFLDIACFFTGE--DIDFVRRIRDDP 325 (353)
Q Consensus 291 sy~~L~~~~k~~fl~la~fp~~~--~~~~l~~~w~~~ 325 (353)
||+.||++.|+||++||+||+++ +.+.++.+|.++
T Consensus 243 s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e 279 (287)
T PF00931_consen 243 SYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAE 279 (287)
T ss_dssp HHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-
T ss_pred chhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHC
Confidence 99999999999999999999987 589999999986
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.80 E-value=1.3e-20 Score=154.08 Aligned_cols=130 Identities=34% Similarity=0.587 Sum_probs=106.9
Q ss_pred EEEeccccccccchHHHHHHHHHhC--CcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccchhhHhhhhhhh
Q 045634 18 VFLSFRGEDTRNGFTSHLAAALHRK--QIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVNIL 95 (353)
Q Consensus 18 vFiSy~~~D~~~~f~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~~ 95 (353)
|||||++.|.++.|+.+|..+|++. |+++|++++|+.+|..+.++|.++|++||++|+|+|++|+.|.||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 7999999444567999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred hccccC--CcEEEeEEeecCCcccc-cccccccccceecccCC-----chHHHHHHHHHH
Q 045634 96 DCKKMN--GKIVIPVFYQVDPSDVR-KQRRSFGEAFVHHENNF-----PDKVQKWRDALT 147 (353)
Q Consensus 96 ~~~~~~--~~~vipI~ggVgkt~~~-~~~~~f~~~~~~~~~~~-----~~~~~~~~~~l~ 147 (353)
.+.... ...|+|++++|.+..+. .+.+.|...+....... .....-|+++..
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 988433 58899999999999988 67777775554433222 235677877653
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.75 E-value=2.2e-18 Score=140.56 Aligned_cols=134 Identities=41% Similarity=0.691 Sum_probs=104.7
Q ss_pred ceeEEEeccc-cccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccchhhHhhhhh
Q 045634 15 KYKVFLSFRG-EDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVN 93 (353)
Q Consensus 15 ~~dvFiSy~~-~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~ 93 (353)
.|||||||++ ++..+.|+.+|...|...|+.+|.|++. +|.....+|.++|++|++.|+++|++|..|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~--~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE--PGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcc--cccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 5999999999 4556789999999999999999999743 343333499999999999999999999999999999999
Q ss_pred hhhcc-ccCCcEEEeEEeecCCcccccccccccccceecccCCchHH--HHHHHHHHhhc
Q 045634 94 ILDCK-KMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHENNFPDKV--QKWRDALTEAS 150 (353)
Q Consensus 94 ~~~~~-~~~~~~vipI~ggVgkt~~~~~~~~f~~~~~~~~~~~~~~~--~~~~~~l~~~~ 150 (353)
++... +..+.+||||+++..|..+..+.+.+...+..+....++.. ..|+..+..+.
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 99876 33668999999977776666666666655544322233222 57888776654
No 7
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.56 E-value=1.7e-15 Score=116.59 Aligned_cols=86 Identities=35% Similarity=0.622 Sum_probs=74.4
Q ss_pred EEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccchhhHhhhhhhhhc
Q 045634 18 VFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVNILDC 97 (353)
Q Consensus 18 vFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~~~~ 97 (353)
|||||+.+| ..++.+|...|+..|+++|+|. ++.+|+.+.+.|.++|++|+..|+++|++|..|.||..|+..+..
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence 899999999 5699999999999999999997 999999999999999999999999999999999999999988844
Q ss_pred cccCCcEEEeEEe
Q 045634 98 KKMNGKIVIPVFY 110 (353)
Q Consensus 98 ~~~~~~~vipI~g 110 (353)
.+..|+||..
T Consensus 77 ---~~~~iipv~~ 86 (102)
T PF13676_consen 77 ---RGKPIIPVRL 86 (102)
T ss_dssp ---TSESEEEEEC
T ss_pred ---CCCEEEEEEE
Confidence 3357999974
No 8
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.09 E-value=9.7e-09 Score=108.55 Aligned_cols=180 Identities=16% Similarity=0.218 Sum_probs=120.2
Q ss_pred cCceeeEeccccc-hHHHH-HHHHhhcC-CCCCcEEEEEeCccccccccC---ccceEEeC----CCChhHHHHHHHHhh
Q 045634 168 LMKVLIVLDDVHD-EFTEL-KSLARRLQ-FSGRSRIIITSRDKGVLDKCG---VNNMYEVK----GLKYNKALELFCRKA 237 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~-~~l~~~~~-~~~gs~IivTTR~~~v~~~~~---~~~~~~l~----~L~~~ea~~Lf~~~a 237 (353)
+.+++|||||+.. +.... +.+...+. ..++.++|||||...-..... .....++. +|+.+|+.++|....
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 5789999999976 21222 23333333 456778889999853221110 12345555 899999999997654
Q ss_pred hccCCCCccHHHHHHHHHHHcCCChHHHHHHhhcc--cc--------ccccCCCchHHHHHHhh-hccCCHhHHHHHhhh
Q 045634 238 FRETNCSHDLLELSEEVVRHADGNPLALEVLANNN--GK--------LMKLISEPNIYNVLKIS-YDELNLEEKKTFLDI 306 (353)
Q Consensus 238 ~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~~--~~--------~l~~~~~~~v~~~l~~s-y~~L~~~~k~~fl~l 306 (353)
.. .-..+...++.+.|+|+|+++..++... .. .+...+...+...+.-. ++.||++.++.++.+
T Consensus 200 ~~-----~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~ 274 (903)
T PRK04841 200 SS-----PIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRC 274 (903)
T ss_pred CC-----CCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 21 1124567889999999999999887541 11 01111233466654444 899999999999999
Q ss_pred hccCCCCCHHHHHHHHhcC---chHHHHhhCCCcEee----CCeEEechhhhhC
Q 045634 307 ACFFTGEDIDFVRRIRDDP---SSLDTFVDKSLITIF----YNELQMHDLLQEM 353 (353)
Q Consensus 307 a~fp~~~~~~~l~~~w~~~---~~l~~L~~~sLl~~~----~~~~~mHdlv~d~ 353 (353)
|+++ .++.+.+..+.... ..++.|.+.+|+... ...|++|+|++++
T Consensus 275 a~~~-~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~ 327 (903)
T PRK04841 275 SVLR-SMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASF 327 (903)
T ss_pred cccc-cCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHH
Confidence 9987 66665555555433 799999999997643 2369999999874
No 9
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.80 E-value=1.3e-08 Score=94.54 Aligned_cols=95 Identities=23% Similarity=0.437 Sum_probs=81.6
Q ss_pred CCCCCceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccc-----
Q 045634 10 LTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASS----- 84 (353)
Q Consensus 10 ~~~~~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s----- 84 (353)
.....+.|||||||.. +....++.+.-.|+..|++||||-+++..|+ +.+.+.+.|..+|..|.|++||....
T Consensus 607 a~~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~ 684 (832)
T KOG3678|consen 607 AMLSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDD 684 (832)
T ss_pred ccccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccc
Confidence 4567889999999876 4567999999999999999999998888776 67889999999999999999997543
Q ss_pred ---hhhHhhhhhhhhccccCCcEEEeEEe
Q 045634 85 ---KWCLNELVNILDCKKMNGKIVIPVFY 110 (353)
Q Consensus 85 ---~~~~~El~~~~~~~~~~~~~vipI~g 110 (353)
.|...|+.-+++++ ..|||||-
T Consensus 685 nCeDWVHKEl~~Afe~~----KNIiPI~D 709 (832)
T KOG3678|consen 685 NCEDWVHKELKCAFEHQ----KNIIPIFD 709 (832)
T ss_pred cHHHHHHHHHHHHHHhc----CCeeeeec
Confidence 68899999988877 45999985
No 10
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.15 E-value=5.1e-06 Score=66.62 Aligned_cols=90 Identities=23% Similarity=0.434 Sum_probs=46.4
Q ss_pred eeEEEeccccccccchHHHHHHHHHhC-------Ccce-ee---------ccccccCCCCccHHHHHHhhhcCeEEeeec
Q 045634 16 YKVFLSFRGEDTRNGFTSHLAAALHRK-------QIQF-FI---------DDEELEKGDEISPALFIAVETSDISVIILS 78 (353)
Q Consensus 16 ~dvFiSy~~~D~~~~f~~~l~~~L~~~-------g~~~-~~---------d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S 78 (353)
|.|||||+..|.. .....|...+... ++.. |. +..+....+.|...|.++|+.|.++|++++
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999843 2666666666652 2211 11 112222344788899999999999999999
Q ss_pred cCcccchhhHhhhhhhhhccccCCcEEEeEEe
Q 045634 79 KDYASSKWCLNELVNILDCKKMNGKIVIPVFY 110 (353)
Q Consensus 79 ~~~~~s~~~~~El~~~~~~~~~~~~~vipI~g 110 (353)
++...|+|+..|+..+++.. ..||.|..
T Consensus 80 ~~T~~s~wV~~EI~~A~~~~----~~Ii~V~~ 107 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALKKG----KPIIGVYL 107 (130)
T ss_dssp TT----HHHHHHHHHHTTT-------EEEEET
T ss_pred CCcccCcHHHHHHHHHHHCC----CCEEEEEC
Confidence 99999999999999988733 44555543
No 11
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.05 E-value=0.00017 Score=72.77 Aligned_cols=272 Identities=15% Similarity=0.145 Sum_probs=156.4
Q ss_pred hcCeEEeeeccCcccchhhHhhhhhhhhccccCCcEEEeEE--eecCCcccccc-----cccccccceecccCCchH---
Q 045634 69 TSDISVIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVF--YQVDPSDVRKQ-----RRSFGEAFVHHENNFPDK--- 138 (353)
Q Consensus 69 ~s~~~i~v~S~~~~~s~~~~~El~~~~~~~~~~~~~vipI~--ggVgkt~~~~~-----~~~f~~~~~~~~~~~~~~--- 138 (353)
.+|.+..+..++|+..+--.++|.... +.+++-|- -|-|||++.-+ ...-..+|-.......+.
T Consensus 9 ~sk~~~P~~~~~~v~R~rL~~~L~~~~------~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF 82 (894)
T COG2909 9 PSKLVRPVRPDNYVVRPRLLDRLRRAN------DYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARF 82 (894)
T ss_pred ccccCCCCCcccccccHHHHHHHhcCC------CceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHH
Confidence 355556666667766554444443322 33344333 39999954222 122224555544333232
Q ss_pred HHHHHHHHHhhccCCCCCchH--------------HHHHHHHh--cCceeeEeccccc--hHHHHHHHHhhcC-CCCCcE
Q 045634 139 VQKWRDALTEASNLSGYDSTE--------------SRIKKRLQ--LMKVLIVLDDVHD--EFTELKSLARRLQ-FSGRSR 199 (353)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~~--------------~~l~~~L~--~kr~LlVLDdv~~--~~~~~~~l~~~~~-~~~gs~ 199 (353)
...+.+++.+.....|-.... +.+...+. .++..+||||..- +...-+.+...+. ..++-.
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~ 162 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLT 162 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeE
Confidence 444455555554333322111 12222222 3678999999864 1222223333334 567889
Q ss_pred EEEEeCccccccccC---ccceEEe----CCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhcc
Q 045634 200 IIITSRDKGVLDKCG---VNNMYEV----KGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNN 272 (353)
Q Consensus 200 IivTTR~~~v~~~~~---~~~~~~l----~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~~ 272 (353)
.|+|||...-...-. .+...++ -.++.+|+-++|..... .+-....++.+.+..+|.+-|+..++=..
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHHHHc
Confidence 999999976433211 1122333 24789999999886641 11223457888999999999998776541
Q ss_pred c------cccccCC--CchHHH-HHHhhhccCCHhHHHHHhhhhccCCCCCHHHHHHHHhcC----chHHHHhhCCCcEe
Q 045634 273 G------KLMKLIS--EPNIYN-VLKISYDELNLEEKKTFLDIACFFTGEDIDFVRRIRDDP----SSLDTFVDKSLITI 339 (353)
Q Consensus 273 ~------~~l~~~~--~~~v~~-~l~~sy~~L~~~~k~~fl~la~fp~~~~~~~l~~~w~~~----~~l~~L~~~sLl~~ 339 (353)
. ..++... .+.+.+ ..+--++.||++.|..++-+|+++.-. +.|.....+. ..+++|.+++|+-.
T Consensus 238 ~~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~--~eL~~~Ltg~~ng~amLe~L~~~gLFl~ 315 (894)
T COG2909 238 RNNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFN--DELCNALTGEENGQAMLEELERRGLFLQ 315 (894)
T ss_pred cCCCcHHHHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh--HHHHHHHhcCCcHHHHHHHHHhCCCcee
Confidence 1 1111111 122332 344567899999999999999995322 3444444443 78999999999986
Q ss_pred e----CCeEEechhhhhC
Q 045634 340 F----YNELQMHDLLQEM 353 (353)
Q Consensus 340 ~----~~~~~mHdlv~d~ 353 (353)
. ++.|+.|.|..||
T Consensus 316 ~Ldd~~~WfryH~LFaeF 333 (894)
T COG2909 316 RLDDEGQWFRYHHLFAEF 333 (894)
T ss_pred eecCCCceeehhHHHHHH
Confidence 5 5679999998875
No 12
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.00 E-value=0.00062 Score=65.15 Aligned_cols=263 Identities=14% Similarity=0.105 Sum_probs=131.9
Q ss_pred eeccCcccchh-----hHhhhhhhhhcc-ccCCcEEEeEEe--ecCCcccccc-ccc-------ccccceecccCCchHH
Q 045634 76 ILSKDYASSKW-----CLNELVNILDCK-KMNGKIVIPVFY--QVDPSDVRKQ-RRS-------FGEAFVHHENNFPDKV 139 (353)
Q Consensus 76 v~S~~~~~s~~-----~~~El~~~~~~~-~~~~~~vipI~g--gVgkt~~~~~-~~~-------f~~~~~~~~~~~~~~~ 139 (353)
+|+++|..... -++++...+... .+.....+-|.| |+|||.+-+. ... +...+..+. ......
T Consensus 22 ~l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~-~~~~~~ 100 (394)
T PRK00411 22 VLEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ-IDRTRY 100 (394)
T ss_pred hCCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC-cCCCHH
Confidence 35555544433 244555555333 222333445777 9999943322 111 111222221 222333
Q ss_pred HHHHHHHHhhccC----CCCCch--HHHHHHHHh--cCceeeEeccccchHH------HHHHHHhhcCCCCCcE--EEEE
Q 045634 140 QKWRDALTEASNL----SGYDST--ESRIKKRLQ--LMKVLIVLDDVHDEFT------ELKSLARRLQFSGRSR--IIIT 203 (353)
Q Consensus 140 ~~~~~~l~~~~~~----~g~~~~--~~~l~~~L~--~kr~LlVLDdv~~~~~------~~~~l~~~~~~~~gs~--IivT 203 (353)
..+..++.++... .+.... ...+.+.+. ++..+||||+++. .. .+..+...+...++++ +|.+
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~-l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i 179 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINY-LFEKEGNDVLYSLLRAHEEYPGARIGVIGI 179 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhH-hhccCCchHHHHHHHhhhccCCCeEEEEEE
Confidence 4455555555431 222222 145555554 3468999999987 32 3344433332223333 5666
Q ss_pred eCccccccccC-------ccceEEeCCCChhHHHHHHHHhhhcc---CCCC-ccHHHHHHHHHHHcCCChHHHHHHhhc-
Q 045634 204 SRDKGVLDKCG-------VNNMYEVKGLKYNKALELFCRKAFRE---TNCS-HDLLELSEEVVRHADGNPLALEVLANN- 271 (353)
Q Consensus 204 TR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~---~~~~-~~~~~~~~~i~~~c~glPLal~~~g~~- 271 (353)
+....+..... ....+.+++++.++..+++..++-.. .... ...+.+++......|..+.|+.++-..
T Consensus 180 ~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 180 SSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred ECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 66554332221 12467899999999999988776321 1112 222333333333356678888776543
Q ss_pred --ccc-ccccCCCchHH--------HHHHhhhccCCHhHHHHHhhhhccC----CCCCHHHHHH-------HHhcC----
Q 045634 272 --NGK-LMKLISEPNIY--------NVLKISYDELNLEEKKTFLDIACFF----TGEDIDFVRR-------IRDDP---- 325 (353)
Q Consensus 272 --~~~-~l~~~~~~~v~--------~~l~~sy~~L~~~~k~~fl~la~fp----~~~~~~~l~~-------~w~~~---- 325 (353)
+.. .-.....+.+. ....-.+..||.+.|..+..++..- .......+.. .....
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~ 339 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTH 339 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcH
Confidence 111 00111112222 2334567889998888877666432 2223332221 11111
Q ss_pred ----chHHHHhhCCCcEee
Q 045634 326 ----SSLDTFVDKSLITIF 340 (353)
Q Consensus 326 ----~~l~~L~~~sLl~~~ 340 (353)
.+++.|.+.+||...
T Consensus 340 ~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 340 TRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHHHHHhcCCeEEE
Confidence 899999999999864
No 13
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.00 E-value=1.3e-05 Score=74.60 Aligned_cols=230 Identities=25% Similarity=0.271 Sum_probs=145.0
Q ss_pred EeEEeecCCccccccccc----cc--ccceecccCCchHHHHHHHHHHhhccCCCCC--chHHHHHHHHhcCceeeEecc
Q 045634 106 IPVFYQVDPSDVRKQRRS----FG--EAFVHHENNFPDKVQKWRDALTEASNLSGYD--STESRIKKRLQLMKVLIVLDD 177 (353)
Q Consensus 106 ipI~ggVgkt~~~~~~~~----f~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~~~~l~~~L~~kr~LlVLDd 177 (353)
+-..||||||.+.-+..+ |. ..++.... .-| ...|--++...-...+.+ ..-..+..+..++|.++|+||
T Consensus 19 L~g~ggvgkttl~~~~a~~~~~~~~~v~~vdl~p-itD-~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr~llvldn 96 (414)
T COG3903 19 LTGAGGVGKTTLALQAAHAASEYADGVAFVDLAP-ITD-PALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRRALLVLDN 96 (414)
T ss_pred eeccCccceehhhhhhHhHhhhcccceeeeeccc-cCc-hhHhHHHHHhhcccccccchHHHHHHHHHHhhhhHHHHhcC
Confidence 344449999977655444 44 23333331 112 233333333222222222 122577888899999999999
Q ss_pred ccchHHHHHHHHhhcC-CCCCcEEEEEeCccccccccCccceEEeCCCChh-HHHHHHHHhhhccC---CCCccHHHHHH
Q 045634 178 VHDEFTELKSLARRLQ-FSGRSRIIITSRDKGVLDKCGVNNMYEVKGLKYN-KALELFCRKAFRET---NCSHDLLELSE 252 (353)
Q Consensus 178 v~~~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~---~~~~~~~~~~~ 252 (353)
..+-..+-..+...+. ..+.-.|+.|+|+.... ..+..+.+++|+.. ++.++|...+.... ...........
T Consensus 97 cehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~ 173 (414)
T COG3903 97 CEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVA 173 (414)
T ss_pred cHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHH
Confidence 9872223333333344 56666788899876543 24567888888866 78899887764322 12234556788
Q ss_pred HHHHHcCCChHHHHHHhhc---------------ccccccc------CCCchHHHHHHhhhccCCHhHHHHHhhhhccCC
Q 045634 253 EVVRHADGNPLALEVLANN---------------NGKLMKL------ISEPNIYNVLKISYDELNLEEKKTFLDIACFFT 311 (353)
Q Consensus 253 ~i~~~c~glPLal~~~g~~---------------~~~~l~~------~~~~~v~~~l~~sy~~L~~~~k~~fl~la~fp~ 311 (353)
.|.+...|.|++|...++. .+..+.. .........+..||.-|..-.+-.|-.++.|..
T Consensus 174 ~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rLa~~~g 253 (414)
T COG3903 174 EICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRLAVFVG 253 (414)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcchhhhhh
Confidence 9999999999999999887 1111111 122456778999999999999999999999988
Q ss_pred CCCHHHHHHH-----HhcC-----chHHHHhhCCCcEee
Q 045634 312 GEDIDFVRRI-----RDDP-----SSLDTFVDKSLITIF 340 (353)
Q Consensus 312 ~~~~~~l~~~-----w~~~-----~~l~~L~~~sLl~~~ 340 (353)
.++.+..... |.-. ..+..|+++|++...
T Consensus 254 ~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 254 GFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred hhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhh
Confidence 8765421111 1001 677788889887654
No 14
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.99 E-value=5.4e-05 Score=69.84 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=92.3
Q ss_pred CcEEEEEeCcccccccc--CccceEEeCCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhccc-
Q 045634 197 RSRIIITSRDKGVLDKC--GVNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNNG- 273 (353)
Q Consensus 197 gs~IivTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~~~- 273 (353)
.+-|..||+...+.... .....+++++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..++....
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRVRD 207 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45556677765443321 12346799999999999999988743221 22356678899999999976655544411
Q ss_pred ----cccccCCC---chHHHHHHhhhccCCHhHHHHHh-hhhccCCC-CCHHHHHHHHhcC-----chHH-HHhhCCCcE
Q 045634 274 ----KLMKLISE---PNIYNVLKISYDELNLEEKKTFL-DIACFFTG-EDIDFVRRIRDDP-----SSLD-TFVDKSLIT 338 (353)
Q Consensus 274 ----~~l~~~~~---~~v~~~l~~sy~~L~~~~k~~fl-~la~fp~~-~~~~~l~~~w~~~-----~~l~-~L~~~sLl~ 338 (353)
..-..... ......+...|..|+...+..+. .++.+..+ ...+.+...+... ..++ .|++++||.
T Consensus 208 ~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 208 FAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcc
Confidence 11111111 22333356678889998888776 55666543 4677777776554 6677 699999997
Q ss_pred ee-CCe
Q 045634 339 IF-YNE 343 (353)
Q Consensus 339 ~~-~~~ 343 (353)
.. .|+
T Consensus 288 ~~~~g~ 293 (305)
T TIGR00635 288 RTPRGR 293 (305)
T ss_pred cCCchh
Confidence 54 443
No 15
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.89 E-value=9.8e-05 Score=68.90 Aligned_cols=142 Identities=14% Similarity=0.065 Sum_probs=92.9
Q ss_pred CcEEEEEeCccccccccC--ccceEEeCCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhc--c
Q 045634 197 RSRIIITSRDKGVLDKCG--VNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANN--N 272 (353)
Q Consensus 197 gs~IivTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~--~ 272 (353)
.+-|..||+...+..... ....+++++++.++..+++.+.+.... ..-..+.+..|++.|+|.|-.+..+... .
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~ 228 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRVRD 228 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 345566777555433221 234689999999999999998875432 2233467889999999999755554443 1
Q ss_pred ccc---cccCCC---chHHHHHHhhhccCCHhHHHHHh-hhhccCCC-CCHHHHHHHHhcC-----chHH-HHhhCCCcE
Q 045634 273 GKL---MKLISE---PNIYNVLKISYDELNLEEKKTFL-DIACFFTG-EDIDFVRRIRDDP-----SSLD-TFVDKSLIT 338 (353)
Q Consensus 273 ~~~---l~~~~~---~~v~~~l~~sy~~L~~~~k~~fl-~la~fp~~-~~~~~l~~~w~~~-----~~l~-~L~~~sLl~ 338 (353)
... ...... ......+...+..|++..+..+. .+..|+.+ ...+.+...+... +.++ .|++.+||.
T Consensus 229 ~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 229 FAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred HHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcc
Confidence 111 111111 23445566778889998888885 66777655 4677777776554 5677 899999997
Q ss_pred ee
Q 045634 339 IF 340 (353)
Q Consensus 339 ~~ 340 (353)
..
T Consensus 309 ~~ 310 (328)
T PRK00080 309 RT 310 (328)
T ss_pred cC
Confidence 54
No 16
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.53 E-value=0.0032 Score=56.79 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=66.8
Q ss_pred hcCceeeEeccccc-hHHHHHHHHhhcC--C--CCCcEEEEEeCcccccccc----------CccceEEeCCCChhHHHH
Q 045634 167 QLMKVLIVLDDVHD-EFTELKSLARRLQ--F--SGRSRIIITSRDKGVLDKC----------GVNNMYEVKGLKYNKALE 231 (353)
Q Consensus 167 ~~kr~LlVLDdv~~-~~~~~~~l~~~~~--~--~~gs~IivTTR~~~v~~~~----------~~~~~~~l~~L~~~ea~~ 231 (353)
.+++.++|+||++. ....++.+..... . .....|++|.... ..... .....+++++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 56789999999987 3345555543222 1 2223455655432 11111 013467899999999999
Q ss_pred HHHHhhhccCC--CCccHHHHHHHHHHHcCCChHHHHHHhhc
Q 045634 232 LFCRKAFRETN--CSHDLLELSEEVVRHADGNPLALEVLANN 271 (353)
Q Consensus 232 Lf~~~a~~~~~--~~~~~~~~~~~i~~~c~glPLal~~~g~~ 271 (353)
++......... ...-..+..+.|.+.++|.|..|..++..
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~ 241 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDR 241 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHH
Confidence 88876643221 11223578899999999999999998887
No 17
>PF05729 NACHT: NACHT domain
Probab=97.52 E-value=0.00058 Score=56.46 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=49.1
Q ss_pred hcCceeeEeccccc--h-HH-----HHHHHH-hhcC--CCCCcEEEEEeCcccc---ccccCccceEEeCCCChhHHHHH
Q 045634 167 QLMKVLIVLDDVHD--E-FT-----ELKSLA-RRLQ--FSGRSRIIITSRDKGV---LDKCGVNNMYEVKGLKYNKALEL 232 (353)
Q Consensus 167 ~~kr~LlVLDdv~~--~-~~-----~~~~l~-~~~~--~~~gs~IivTTR~~~v---~~~~~~~~~~~l~~L~~~ea~~L 232 (353)
..+++++|||++++ + .. .+..+. ..+. ..++.++|||+|.... .........+++.+|+.++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 56799999999987 1 11 122222 2222 3578999999998776 22233446899999999999998
Q ss_pred HHHhh
Q 045634 233 FCRKA 237 (353)
Q Consensus 233 f~~~a 237 (353)
+.+..
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 87654
No 18
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.52 E-value=0.00016 Score=59.43 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=55.8
Q ss_pred eEEEecccccc-ccchHHHHHHHHHhC-CcceeeccccccC--CCCccHHHHHHhhhcCeEEeeeccCc
Q 045634 17 KVFLSFRGEDT-RNGFTSHLAAALHRK-QIQFFIDDEELEK--GDEISPALFIAVETSDISVIILSKDY 81 (353)
Q Consensus 17 dvFiSy~~~D~-~~~f~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~i~~~i~~s~~~i~v~S~~~ 81 (353)
-|||||+.... ..+.+..|+..|+.. |+.|.+|.++... +......+.+.++++...|+|.|+.+
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 49999998543 246799999999999 9999999988844 66778999999999999999999765
No 19
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.44 E-value=0.0022 Score=56.05 Aligned_cols=97 Identities=27% Similarity=0.251 Sum_probs=51.0
Q ss_pred CceeeEeccccchHH--------HHHHHH---hhcCCCCCcEEEEEeCccccccc--------cCccceEEeCCCChhHH
Q 045634 169 MKVLIVLDDVHDEFT--------ELKSLA---RRLQFSGRSRIIITSRDKGVLDK--------CGVNNMYEVKGLKYNKA 229 (353)
Q Consensus 169 kr~LlVLDdv~~~~~--------~~~~l~---~~~~~~~gs~IivTTR~~~v~~~--------~~~~~~~~l~~L~~~ea 229 (353)
++++||+|++.. .. ....+. ........-.+++++....+... .+....+.+++|+.+++
T Consensus 118 ~~~iiviDe~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~ 196 (234)
T PF01637_consen 118 KKVIIVIDEFQY-LAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEA 196 (234)
T ss_dssp CCEEEEEETGGG-GGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHH
T ss_pred CcEEEEEecHHH-HhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHH
Confidence 469999999987 33 122222 22222233344455444333322 23334599999999999
Q ss_pred HHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHH
Q 045634 230 LELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEV 267 (353)
Q Consensus 230 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~ 267 (353)
.+++....-..... +...+..++|...+||+|..|..
T Consensus 197 ~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 197 REFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 99998865322111 12355679999999999998764
No 20
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.30 E-value=0.035 Score=52.43 Aligned_cols=180 Identities=16% Similarity=0.122 Sum_probs=94.5
Q ss_pred HHHHHHHh--cCceeeEeccccchH-----HHHHHHHhh--cCC--CCCcEEEEEeCccccccccC-------ccceEEe
Q 045634 160 SRIKKRLQ--LMKVLIVLDDVHDEF-----TELKSLARR--LQF--SGRSRIIITSRDKGVLDKCG-------VNNMYEV 221 (353)
Q Consensus 160 ~~l~~~L~--~kr~LlVLDdv~~~~-----~~~~~l~~~--~~~--~~gs~IivTTR~~~v~~~~~-------~~~~~~l 221 (353)
..+.+.+. +++++||||+++. . ..+..+... ... +....+|.+|........+. ....+.+
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~-L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f 196 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDY-LVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIF 196 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhh-hccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeee
Confidence 34445553 4578999999987 3 112233322 111 12334555554443221110 1246889
Q ss_pred CCCChhHHHHHHHHhhh---ccCCCCccHHHHHHHHHHHcCCChH-HHHHHhhc---c-ccccccCCCchHH--------
Q 045634 222 KGLKYNKALELFCRKAF---RETNCSHDLLELSEEVVRHADGNPL-ALEVLANN---N-GKLMKLISEPNIY-------- 285 (353)
Q Consensus 222 ~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~c~glPL-al~~~g~~---~-~~~l~~~~~~~v~-------- 285 (353)
++.+.++-.+++..++- ......++..+.+..++....|.|- |+.++-.. . .........+.+.
T Consensus 197 ~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~ 276 (365)
T TIGR02928 197 PPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK 276 (365)
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 99999999999988763 1111222333455556777778874 33333222 1 1111111122222
Q ss_pred HHHHhhhccCCHhHHHHHhhhhccCC----CCCHHHHHHHHh-cC--------------chHHHHhhCCCcEee
Q 045634 286 NVLKISYDELNLEEKKTFLDIACFFT----GEDIDFVRRIRD-DP--------------SSLDTFVDKSLITIF 340 (353)
Q Consensus 286 ~~l~~sy~~L~~~~k~~fl~la~fp~----~~~~~~l~~~w~-~~--------------~~l~~L~~~sLl~~~ 340 (353)
....-+...||.+.+.++..++..-+ ......+...+. .+ ++++.|...|||...
T Consensus 277 ~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 277 DRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 23344667898888877766653221 123333322110 00 899999999999976
No 21
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.24 E-value=0.016 Score=60.82 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=98.8
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CC----CCcEEEEEeCcccc----ccccCccceEEeCCCChhHHHHHHHHhh
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FS----GRSRIIITSRDKGV----LDKCGVNNMYEVKGLKYNKALELFCRKA 237 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~----~gs~IivTTR~~~v----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 237 (353)
.++..+|+||+.- |...++-+..... .. ....|..+...... ...-.....+.+.||+..+...+.....
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence 3599999999953 3333333222111 11 01122222222111 1111234689999999999999988776
Q ss_pred hccCCCCccHHHHHHHHHHHcCCChHHHHHHhhc-----------ccccccc----CCC----chHHHHHHhhhccCCHh
Q 045634 238 FRETNCSHDLLELSEEVVRHADGNPLALEVLANN-----------NGKLMKL----ISE----PNIYNVLKISYDELNLE 298 (353)
Q Consensus 238 ~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~-----------~~~~l~~----~~~----~~v~~~l~~sy~~L~~~ 298 (353)
.... .......+.|.++..|.|+-+..+-.. ....|.. .+. +.+.+.+..-.+.||..
T Consensus 233 ~~~~---~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 233 GCTK---LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred CCcc---cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHH
Confidence 3322 223467889999999999999877666 1111111 111 23555688899999999
Q ss_pred HHHHHhhhhccCCCCCHHHHHHHHhcC
Q 045634 299 EKKTFLDIACFFTGEDIDFVRRIRDDP 325 (353)
Q Consensus 299 ~k~~fl~la~fp~~~~~~~l~~~w~~~ 325 (353)
.|+.+-..||+-..++.+.|..++...
T Consensus 310 t~~Vl~~AA~iG~~F~l~~La~l~~~~ 336 (849)
T COG3899 310 TREVLKAAACIGNRFDLDTLAALAEDS 336 (849)
T ss_pred HHHHHHHHHHhCccCCHHHHHHHHhhc
Confidence 999999999999899988888888743
No 22
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.0015 Score=60.83 Aligned_cols=136 Identities=19% Similarity=0.228 Sum_probs=86.9
Q ss_pred ecCCcccccccc-cccccceecccCCchHHHHHHHHHHhhccCCCCCchHHHHHHHHhcCceeeEeccccc-hHHHHHHH
Q 045634 111 QVDPSDVRKQRR-SFGEAFVHHENNFPDKVQKWRDALTEASNLSGYDSTESRIKKRLQLMKVLIVLDDVHD-EFTELKSL 188 (353)
Q Consensus 111 gVgkt~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~l 188 (353)
|+|||.+.+... .++..|...+... ..++.+++++.+.. +....+++.+|.+|.|.. +..+-+.+
T Consensus 58 G~GKTTlA~liA~~~~~~f~~~sAv~-~gvkdlr~i~e~a~------------~~~~~gr~tiLflDEIHRfnK~QQD~l 124 (436)
T COG2256 58 GTGKTTLARLIAGTTNAAFEALSAVT-SGVKDLREIIEEAR------------KNRLLGRRTILFLDEIHRFNKAQQDAL 124 (436)
T ss_pred CCCHHHHHHHHHHhhCCceEEecccc-ccHHHHHHHHHHHH------------HHHhcCCceEEEEehhhhcChhhhhhh
Confidence 899998887653 4446676655333 44566677665432 222347899999999986 46666666
Q ss_pred HhhcCCCCCcEEEE--EeCccccccc---cCccceEEeCCCChhHHHHHHHHhhhccCCCC-----ccHHHHHHHHHHHc
Q 045634 189 ARRLQFSGRSRIII--TSRDKGVLDK---CGVNNMYEVKGLKYNKALELFCRKAFRETNCS-----HDLLELSEEVVRHA 258 (353)
Q Consensus 189 ~~~~~~~~gs~Iiv--TTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-----~~~~~~~~~i~~~c 258 (353)
++. -..|.-|+| ||-++.-.-. ..-..++.+++|+.+|-.+++.+-+......- .-.++...-++..+
T Consensus 125 Lp~--vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s 202 (436)
T COG2256 125 LPH--VENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLS 202 (436)
T ss_pred hhh--hcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhc
Confidence 655 466776666 6666653211 12346899999999999999988443222111 12244566677777
Q ss_pred CCC
Q 045634 259 DGN 261 (353)
Q Consensus 259 ~gl 261 (353)
+|-
T Consensus 203 ~GD 205 (436)
T COG2256 203 NGD 205 (436)
T ss_pred Cch
Confidence 774
No 23
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.25 E-value=0.032 Score=53.83 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=61.1
Q ss_pred hcCceeeEeccccc-hHHHHHHHHhhcCCCCCcEEEE--EeCccc--ccccc-CccceEEeCCCChhHHHHHHHHhhhcc
Q 045634 167 QLMKVLIVLDDVHD-EFTELKSLARRLQFSGRSRIII--TSRDKG--VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRE 240 (353)
Q Consensus 167 ~~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~gs~Iiv--TTR~~~--v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 240 (353)
.+++.+|++|+++. ...+.+.+...+. .|..+++ ||.+.. +...+ .....+.+.+++.++...++.+.+...
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le--~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~ 167 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE--DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDK 167 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh--cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHh
Confidence 35788999999987 2445566655543 3444444 344332 11111 123578999999999999998765321
Q ss_pred CCCC-ccHHHHHHHHHHHcCCChHHHHH
Q 045634 241 TNCS-HDLLELSEEVVRHADGNPLALEV 267 (353)
Q Consensus 241 ~~~~-~~~~~~~~~i~~~c~glPLal~~ 267 (353)
.... .-..+....+++.|+|.|..+.-
T Consensus 168 ~~~~i~i~~~al~~l~~~s~Gd~R~aln 195 (413)
T PRK13342 168 ERGLVELDDEALDALARLANGDARRALN 195 (413)
T ss_pred hcCCCCCCHHHHHHHHHhCCCCHHHHHH
Confidence 1111 23356678889999999876543
No 24
>PRK06893 DNA replication initiation factor; Validated
Probab=96.09 E-value=0.026 Score=49.82 Aligned_cols=95 Identities=15% Similarity=0.220 Sum_probs=60.8
Q ss_pred ceeeEeccccc--hHHHHH-HHHhhcC--CCCCcEEEEEeCcc----------ccccccCccceEEeCCCChhHHHHHHH
Q 045634 170 KVLIVLDDVHD--EFTELK-SLARRLQ--FSGRSRIIITSRDK----------GVLDKCGVNNMYEVKGLKYNKALELFC 234 (353)
Q Consensus 170 r~LlVLDdv~~--~~~~~~-~l~~~~~--~~~gs~IivTTR~~----------~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 234 (353)
.-+|+|||++. ....|+ .+...+. ...|+.+|++|.+. .+...++....+++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 34899999986 123454 3333333 33466665554443 344444456689999999999999999
Q ss_pred HhhhccCCCCccHHHHHHHHHHHcCCChHHHH
Q 045634 235 RKAFRETNCSHDLLELSEEVVRHADGNPLALE 266 (353)
Q Consensus 235 ~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~ 266 (353)
+.+....- .-.++...-|++.+.|-.-++.
T Consensus 172 ~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 172 RNAYQRGI--ELSDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHHcCC--CCCHHHHHHHHHhccCCHHHHH
Confidence 98865431 2235667778888877665443
No 25
>PF13173 AAA_14: AAA domain
Probab=95.79 E-value=0.021 Score=45.30 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=45.3
Q ss_pred HhcCceeeEeccccchHHHHHHHHhhcC-CCCCcEEEEEeCcccccccc------CccceEEeCCCChhHH
Q 045634 166 LQLMKVLIVLDDVHDEFTELKSLARRLQ-FSGRSRIIITSRDKGVLDKC------GVNNMYEVKGLKYNKA 229 (353)
Q Consensus 166 L~~kr~LlVLDdv~~~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~~------~~~~~~~l~~L~~~ea 229 (353)
...++.+++||++.. ...|......+- .++..+|++|+........- |....+++.||+..|-
T Consensus 58 ~~~~~~~i~iDEiq~-~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQY-LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hccCCcEEEEehhhh-hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 444788899999998 777777666665 55678999999887665321 2234678999987763
No 26
>PF14516 AAA_35: AAA-like domain
Probab=95.76 E-value=0.96 Score=42.24 Aligned_cols=266 Identities=12% Similarity=0.103 Sum_probs=130.2
Q ss_pred ccHHHHHHhhhcCeEEeeeccCcccchhhHhhhhhhhhccccCCcEEEeEEe-ecCCccccccccccccccee-cccCC-
Q 045634 59 ISPALFIAVETSDISVIILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFY-QVDPSDVRKQRRSFGEAFVH-HENNF- 135 (353)
Q Consensus 59 ~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~~~~~~~~~~~vipI~g-gVgkt~~~~~~~~f~~~~~~-~~~~~- 135 (353)
+...+.++|.+....+.|..|+..+.++.+..+.+.+... +..++-|=. .+|.+.... ...|-+.|.. .....
T Consensus 19 ~e~~~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l~~~---~~~~v~id~~~~~~~~~~~-~~~f~~~~~~~i~~~L~ 94 (331)
T PF14516_consen 19 AEQECYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERLQQQ---GYRCVYIDLQQLGSAIFSD-LEQFLRWFCEEISRQLK 94 (331)
T ss_pred HHHHHHHHHhcCCCEEEEECcccCCHHHHHHHHHHHHHHC---CCEEEEEEeecCCCcccCC-HHHHHHHHHHHHHHHcC
Confidence 4567778888888888888888888888877776665443 233333222 344321111 0111111111 00001
Q ss_pred -chH-HHHHHHHHHhhccCCCCCchHHHHHHHH---hcCceeeEeccccc--h-H----HHHHHHHhhcCCC-----CCc
Q 045634 136 -PDK-VQKWRDALTEASNLSGYDSTESRIKKRL---QLMKVLIVLDDVHD--E-F----TELKSLARRLQFS-----GRS 198 (353)
Q Consensus 136 -~~~-~~~~~~~l~~~~~~~g~~~~~~~l~~~L---~~kr~LlVLDdv~~--~-~----~~~~~l~~~~~~~-----~gs 198 (353)
+.. ..-|.+.+ .. ...-...+.+.+ .+++.+|++|+++. + . +.+..++...... ..+
T Consensus 95 l~~~l~~~w~~~~---~~---~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~ 168 (331)
T PF14516_consen 95 LDEKLDEYWDEEI---GS---KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQK 168 (331)
T ss_pred CChhHHHHHHHhc---CC---hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccce
Confidence 111 12222111 11 011113444432 25899999999986 1 1 1222222211111 111
Q ss_pred EEEEEeCcc--cccc-----ccCccceEEeCCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhc
Q 045634 199 RIIITSRDK--GVLD-----KCGVNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANN 271 (353)
Q Consensus 199 ~IivTTR~~--~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~ 271 (353)
-.++..... .... ..+....+++++++.+|...|...+-.. --....++|...+||+|.-+..++..
T Consensus 169 L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~Lv~~~~~~ 242 (331)
T PF14516_consen 169 LRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYLVQKACYL 242 (331)
T ss_pred EEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 112221111 1111 1234557899999999999998876422 11223889999999999988888887
Q ss_pred cccccccCCCchHHHHHHhhhccC---CHhHHHHHhhhhccCCCCCH-HHHHHHHhcC-------chHHHHhhCCCcEee
Q 045634 272 NGKLMKLISEPNIYNVLKISYDEL---NLEEKKTFLDIACFFTGEDI-DFVRRIRDDP-------SSLDTFVDKSLITIF 340 (353)
Q Consensus 272 ~~~~l~~~~~~~v~~~l~~sy~~L---~~~~k~~fl~la~fp~~~~~-~~l~~~w~~~-------~~l~~L~~~sLl~~~ 340 (353)
.... .. .+..++.-..... +.+.+.+...+- +.... +.+..++.+. .....|...|||...
T Consensus 243 l~~~--~~---~~~~l~~~a~~~~~~~~~hL~~l~~~L~---~~~~L~~~~~~il~~~~~~~~~~~~~~~L~~~GLV~~~ 314 (331)
T PF14516_consen 243 LVEE--QI---TLEQLLEEAITDNGIYNDHLDRLLDRLQ---QNPELLEAYQQILFSGEPVDLDSDDIYKLESLGLVKRD 314 (331)
T ss_pred HHHc--cC---cHHHHHHHHHHhcccHHHHHHHHHHHHc---cCHHHHHHHHHHHhCCCCcccChHHHHHHHHCCeEEEe
Confidence 2111 00 1111111111110 224444444331 11111 2222233322 667789999999998
Q ss_pred CCeEEech
Q 045634 341 YNELQMHD 348 (353)
Q Consensus 341 ~~~~~mHd 348 (353)
+|++.++.
T Consensus 315 ~~~~~~~n 322 (331)
T PF14516_consen 315 GNQLEVRN 322 (331)
T ss_pred CCEEEEEc
Confidence 88776654
No 27
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.17 E-value=0.07 Score=42.15 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=51.5
Q ss_pred EEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcc
Q 045634 18 VFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYA 82 (353)
Q Consensus 18 vFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~ 82 (353)
|||.|. .| ......+...|+..|+.+.+=......|..+.+.+.+.+.++.-+|++++|+-.
T Consensus 2 VFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~ 63 (125)
T PF10137_consen 2 VFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDI 63 (125)
T ss_pred EEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccccc
Confidence 899987 66 458889999999888876553334578999999999999999999999999643
No 28
>PRK08727 hypothetical protein; Validated
Probab=95.11 E-value=0.13 Score=45.38 Aligned_cols=93 Identities=12% Similarity=0.013 Sum_probs=56.7
Q ss_pred ceeeEeccccch--HHHHH-HHHhhcC--CCCCcEEEEEeCcccc---------ccccCccceEEeCCCChhHHHHHHHH
Q 045634 170 KVLIVLDDVHDE--FTELK-SLARRLQ--FSGRSRIIITSRDKGV---------LDKCGVNNMYEVKGLKYNKALELFCR 235 (353)
Q Consensus 170 r~LlVLDdv~~~--~~~~~-~l~~~~~--~~~gs~IivTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 235 (353)
.-+||+||+... ...|. .+...+. ...|..||+||+...- ...+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 358999999751 12232 2332222 3456679999985322 11112345889999999999999998
Q ss_pred hhhccCCCCccHHHHHHHHHHHcCCChHH
Q 045634 236 KAFRETNCSHDLLELSEEVVRHADGNPLA 264 (353)
Q Consensus 236 ~a~~~~~~~~~~~~~~~~i~~~c~glPLa 264 (353)
++.... ..-.++...-|++.++|-.-.
T Consensus 174 ~a~~~~--l~l~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 174 RAQRRG--LALDEAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHHcC--CCCCHHHHHHHHHhCCCCHHH
Confidence 775422 122345667778888765443
No 29
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.70 E-value=0.9 Score=42.02 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=63.0
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccccc-ccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKGVL-DKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++=++|+|+++. ....++.+...+. ..+++.+|++|.+.... ..+ .....+.+.+++.++....+.... .
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~-~----- 166 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKY-N----- 166 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHh-c-----
Confidence 344455565543 2778899999888 77889999888765432 222 124688999999999888776543 1
Q ss_pred ccHHHHHHHHHHHcCCChHHHHHH
Q 045634 245 HDLLELSEEVVRHADGNPLALEVL 268 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal~~~ 268 (353)
....+.+..++..++|.|.-+...
T Consensus 167 ~~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 167 DIKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 112344677899999988755443
No 30
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.46 E-value=0.31 Score=46.08 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=66.4
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcccc-cccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKGV-LDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. +....+.+...+. ...++.+|++|.+... ...+ .....+.+.+++.++..+++......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---- 215 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---- 215 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----
Confidence 3566899999987 4666777777776 5566777777776543 2222 23468899999999999999875411
Q ss_pred CccHHHHHHHHHHHcCCChHHHHHHhh
Q 045634 244 SHDLLELSEEVVRHADGNPLALEVLAN 270 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal~~~g~ 270 (353)
........++..++|.|+....+..
T Consensus 216 --~~~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 216 --LPDDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 1112226789999999986655543
No 31
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.42 E-value=0.23 Score=43.95 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=56.6
Q ss_pred eeeEeccccc--hHHHHHH-HHhhcC--CCCC-cEEEEEeCccccc---------cccCccceEEeCCCChhHHHHHHHH
Q 045634 171 VLIVLDDVHD--EFTELKS-LARRLQ--FSGR-SRIIITSRDKGVL---------DKCGVNNMYEVKGLKYNKALELFCR 235 (353)
Q Consensus 171 ~LlVLDdv~~--~~~~~~~-l~~~~~--~~~g-s~IivTTR~~~v~---------~~~~~~~~~~l~~L~~~ea~~Lf~~ 235 (353)
-+|++||+.. ....|+. +...+. ...| .++|+||+...-. ..+....++++++++.++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 3789999975 1234433 222222 2233 4799999865321 2223456899999999999999887
Q ss_pred hhhccCCCCccHHHHHHHHHHHcCCChHHH
Q 045634 236 KAFRETNCSHDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 236 ~a~~~~~~~~~~~~~~~~i~~~c~glPLal 265 (353)
.+.... -.-.++...-|++.+.|..-++
T Consensus 179 ~a~~~~--~~l~~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 179 RARLRG--FELPEDVGRFLLKRLDREMRTL 206 (235)
T ss_pred HHHHcC--CCCCHHHHHHHHHhhcCCHHHH
Confidence 664322 2223566777788877665444
No 32
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.29 E-value=0.49 Score=41.34 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=58.5
Q ss_pred HHHHHHHhcCceeeEeccccc--hHHHHH-HHHhhcC--CCCCcEEEEEeCcccc-cccc--------CccceEEeCCCC
Q 045634 160 SRIKKRLQLMKVLIVLDDVHD--EFTELK-SLARRLQ--FSGRSRIIITSRDKGV-LDKC--------GVNNMYEVKGLK 225 (353)
Q Consensus 160 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~-~l~~~~~--~~~gs~IivTTR~~~v-~~~~--------~~~~~~~l~~L~ 225 (353)
..+++.++ .-=+|++||++. ....|. .+...+. ...|.+||+|++...- .... ...-.+++++++
T Consensus 89 ~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd 167 (219)
T PF00308_consen 89 EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPD 167 (219)
T ss_dssp HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----
T ss_pred hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCC
Confidence 34555555 344788999986 122232 2333222 3457789999965432 2222 244589999999
Q ss_pred hhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHH
Q 045634 226 YNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALE 266 (353)
Q Consensus 226 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~ 266 (353)
.++-.+++.+.+-..... --++++.-+++.+.+..-.+.
T Consensus 168 ~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 168 DEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHH
Confidence 999999999888543321 335667777777766554443
No 33
>PLN03025 replication factor C subunit; Provisional
Probab=93.48 E-value=0.57 Score=43.47 Aligned_cols=93 Identities=15% Similarity=0.216 Sum_probs=59.3
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcc-cccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDK-GVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
+.-+++||+++. .....+.+...+. ....+++|+++... .+.... .....+++++++.++....+...+-.....
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~- 177 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP- 177 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC-
Confidence 456899999987 2334455555555 56667777776443 222221 123578999999999998888776332211
Q ss_pred ccHHHHHHHHHHHcCCChH
Q 045634 245 HDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPL 263 (353)
-..+....|++.++|-.-
T Consensus 178 -i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 178 -YVPEGLEAIIFTADGDMR 195 (319)
T ss_pred -CCHHHHHHHHHHcCCCHH
Confidence 124567888899988653
No 34
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.37 E-value=1.5 Score=40.39 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=59.8
Q ss_pred ceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCCc
Q 045634 170 KVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCSH 245 (353)
Q Consensus 170 r~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 245 (353)
+-++++|+++. .....+.+...+. ....+.+|+++.... +.... .....+++++++.++....+...+-.... .
T Consensus 103 ~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~--~ 180 (319)
T PRK00440 103 FKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI--E 180 (319)
T ss_pred ceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC--C
Confidence 55889999876 2334556666555 555677777764322 22211 12346899999999998888877643321 1
Q ss_pred cHHHHHHHHHHHcCCChHHH
Q 045634 246 DLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 246 ~~~~~~~~i~~~c~glPLal 265 (353)
-.++....+++.++|.+--+
T Consensus 181 i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 181 ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCHHHHHHHHHHcCCCHHHH
Confidence 23456778889999887653
No 35
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.23 E-value=0.5 Score=48.77 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=54.4
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcCCCCCcEEEEE--eCccc--ccccc-CccceEEeCCCChhHHHHHHHHhhhcc-
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQFSGRSRIIIT--SRDKG--VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRE- 240 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~~~~gs~IivT--TR~~~--v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~- 240 (353)
+++.+|+||+++. ...+.+.+.+.+ ..|+.++++ |.+.. +.... .-...+.+++|+.++...++.+.+-..
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~l--E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~ 185 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWV--ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKE 185 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHh--cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHH
Confidence 4567999999985 255566666543 345555553 33321 11111 123578999999999999988765310
Q ss_pred ----CCCCccHHHHHHHHHHHcCCC
Q 045634 241 ----TNCSHDLLELSEEVVRHADGN 261 (353)
Q Consensus 241 ----~~~~~~~~~~~~~i~~~c~gl 261 (353)
.....-.++....|++.+.|.
T Consensus 186 ~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 186 RGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred hhcCCcccCCCHHHHHHHHHhCCCC
Confidence 111122345667788888775
No 36
>PRK04195 replication factor C large subunit; Provisional
Probab=93.09 E-value=1.4 Score=43.45 Aligned_cols=93 Identities=19% Similarity=0.186 Sum_probs=56.9
Q ss_pred CceeeEeccccchH------HHHHHHHhhcCCCCCcEEEEEeCcccccc--cc-CccceEEeCCCChhHHHHHHHHhhhc
Q 045634 169 MKVLIVLDDVHDEF------TELKSLARRLQFSGRSRIIITSRDKGVLD--KC-GVNNMYEVKGLKYNKALELFCRKAFR 239 (353)
Q Consensus 169 kr~LlVLDdv~~~~------~~~~~l~~~~~~~~gs~IivTTR~~~v~~--~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~ 239 (353)
++-+||+|+++. . ..++.+...+.. .+..||+|+.+..-.. .. .....+++.+++.++....+...+..
T Consensus 98 ~~kvIiIDEaD~-L~~~~d~~~~~aL~~~l~~-~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 98 RRKLILLDEVDG-IHGNEDRGGARAILELIKK-AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CCeEEEEecCcc-cccccchhHHHHHHHHHHc-CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 577999999986 2 235555544432 2344666664432111 11 23457899999999988888876643
Q ss_pred cCCCCccHHHHHHHHHHHcCCChHHH
Q 045634 240 ETNCSHDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~c~glPLal 265 (353)
.... -..+....|++.++|-.-.+
T Consensus 176 egi~--i~~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 176 EGIE--CDDEALKEIAERSGGDLRSA 199 (482)
T ss_pred cCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 3221 22466788888888865444
No 37
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.21 E-value=0.85 Score=38.62 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=61.2
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcc-cccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDK-GVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+.+-++|+|+++. .....+.+...+. ..+.+.+|++|++. .+...+ .....+++.+++.++..+.+... +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 3466889999987 3455777777776 55667777777654 222222 12358899999999988888776 1
Q ss_pred CccHHHHHHHHHHHcCCChH
Q 045634 244 SHDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPL 263 (353)
-..+.+..+++.++|.|.
T Consensus 169 --i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 --ISEEAAELLLALAGGSPG 186 (188)
T ss_pred --CCHHHHHHHHHHcCCCcc
Confidence 124668899999999885
No 38
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.10 E-value=0.52 Score=41.08 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=59.9
Q ss_pred eeeEeccccc-hH--HHHHHHHhhcC--CCCCcEEEEEeCccccc---------cccCccceEEeCCCChhHHHHHHHHh
Q 045634 171 VLIVLDDVHD-EF--TELKSLARRLQ--FSGRSRIIITSRDKGVL---------DKCGVNNMYEVKGLKYNKALELFCRK 236 (353)
Q Consensus 171 ~LlVLDdv~~-~~--~~~~~l~~~~~--~~~gs~IivTTR~~~v~---------~~~~~~~~~~l~~L~~~ea~~Lf~~~ 236 (353)
-+||+||++. .. .+.+.+...+. ...+..+|+||+..... ..+.....+++++++.++-..++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 4899999986 11 22334443332 23345788888753211 11112357899999999989988875
Q ss_pred hhccCCCCccHHHHHHHHHHHcCCChHHHHHHhh
Q 045634 237 AFRETNCSHDLLELSEEVVRHADGNPLALEVLAN 270 (353)
Q Consensus 237 a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~ 270 (353)
+-... ..-.++....+++.+.|.|..+.-+-.
T Consensus 172 ~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 172 AARRG--LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 53222 112345667788889999987765543
No 39
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.76 E-value=1.4 Score=41.55 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=65.8
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcc-cccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDK-GVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. .....+.++..+. ...+..+|++|... .+.... .-...+++.+++.++..+++...... .
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~--~- 216 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS--Q- 216 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc--c-
Confidence 4566899999987 4556677777766 44555555555433 333222 12358999999999999999874311 1
Q ss_pred CccHHHHHHHHHHHcCCChHHHHHHhhc
Q 045634 244 SHDLLELSEEVVRHADGNPLALEVLANN 271 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal~~~g~~ 271 (353)
. -..+....+++.++|.|.....+...
T Consensus 217 ~-~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 217 G-SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred C-CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 1 12445678999999999866555543
No 40
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.53 E-value=1.1 Score=45.51 Aligned_cols=97 Identities=10% Similarity=0.072 Sum_probs=64.3
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCc-ccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRD-KGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
++.-++|+|+++. .....+.|+..+. ...+.++|++|.+ ..+...+ .-...+.++.++.++..+.+.+.+-...
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-- 200 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-- 200 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--
Confidence 4556899999987 3566788888776 5556665555544 4444332 1235789999999999988887663222
Q ss_pred CccHHHHHHHHHHHcCCChHHHH
Q 045634 244 SHDLLELSEEVVRHADGNPLALE 266 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal~ 266 (353)
.....+..+.|++.++|.|....
T Consensus 201 i~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 201 IAHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHH
Confidence 11223556788999999886443
No 41
>PRK09087 hypothetical protein; Validated
Probab=90.75 E-value=0.84 Score=40.11 Aligned_cols=92 Identities=11% Similarity=0.065 Sum_probs=57.9
Q ss_pred eeEeccccch---HHHHHHHHhhcCCCCCcEEEEEeCc---------cccccccCccceEEeCCCChhHHHHHHHHhhhc
Q 045634 172 LIVLDDVHDE---FTELKSLARRLQFSGRSRIIITSRD---------KGVLDKCGVNNMYEVKGLKYNKALELFCRKAFR 239 (353)
Q Consensus 172 LlVLDdv~~~---~~~~~~l~~~~~~~~gs~IivTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 239 (353)
+|++||+... ...+-.+.... ...|..||+|++. +.+...+.....+++++++.++-.+++.+.+-.
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~-~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSV-RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHH-HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 7888999641 22222222222 3446789998874 223333345678999999999999999988743
Q ss_pred cCCCCccHHHHHHHHHHHcCCChHHHH
Q 045634 240 ETNCSHDLLELSEEVVRHADGNPLALE 266 (353)
Q Consensus 240 ~~~~~~~~~~~~~~i~~~c~glPLal~ 266 (353)
.. ..-.+++..-|++.+.|..-++.
T Consensus 169 ~~--~~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 169 RQ--LYVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred cC--CCCCHHHHHHHHHHhhhhHHHHH
Confidence 22 11235667777777777666554
No 42
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=90.39 E-value=3.9 Score=38.13 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=63.7
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
.|+. |+|+++. .....+.++..+. ...++.+|+||.+.. +...+ .-...+.+.+++.+++.+.+.... . .
T Consensus 107 ~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~-~--- 180 (328)
T PRK05707 107 RKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-P-E--- 180 (328)
T ss_pred CeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-c-c---
Confidence 4544 6799986 4667778887777 566778888887754 33332 223578999999999998887653 1 1
Q ss_pred ccHHHHHHHHHHHcCCChHHHHHHh
Q 045634 245 HDLLELSEEVVRHADGNPLALEVLA 269 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal~~~g 269 (353)
...+.+..++..++|.|+....+.
T Consensus 181 -~~~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 181 -SDERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred -CChHHHHHHHHHcCCCHHHHHHHH
Confidence 123345677899999997655443
No 43
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=89.93 E-value=3.1 Score=43.73 Aligned_cols=169 Identities=11% Similarity=0.047 Sum_probs=80.6
Q ss_pred ceeeEeccccchHH--HHHHHHhhcC--CCCCcEEEE--EeCcccc--------ccccCccceEEeCCCChhHHHHHHHH
Q 045634 170 KVLIVLDDVHDEFT--ELKSLARRLQ--FSGRSRIII--TSRDKGV--------LDKCGVNNMYEVKGLKYNKALELFCR 235 (353)
Q Consensus 170 r~LlVLDdv~~~~~--~~~~l~~~~~--~~~gs~Iiv--TTR~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 235 (353)
..+||||+++. .. .-+.|...+. ...+++|++ +|.+-.. ...++ ...+..++.+.++-.+++..
T Consensus 870 v~IIILDEID~-L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~ 947 (1164)
T PTZ00112 870 VSILIIDEIDY-LITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKE 947 (1164)
T ss_pred ceEEEeehHhh-hCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHH
Confidence 45899999986 21 1122222221 234555554 3322111 11122 12356689999999999998
Q ss_pred hhhccC--CCCccHHHHHHHHHHHcCCChHHHHHHhhc-cccccccCCCchHHHH--------HHhhhccCCHhHHHHHh
Q 045634 236 KAFRET--NCSHDLLELSEEVVRHADGNPLALEVLANN-NGKLMKLISEPNIYNV--------LKISYDELNLEEKKTFL 304 (353)
Q Consensus 236 ~a~~~~--~~~~~~~~~~~~i~~~c~glPLal~~~g~~-~~~~l~~~~~~~v~~~--------l~~sy~~L~~~~k~~fl 304 (353)
++-... -....++-+|+.++..-|..=.||.++-.+ ....-.......|..+ +.-....||.+.|-.++
T Consensus 948 RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAleeiE~srI~e~IktLPlHqKLVLl 1027 (1164)
T PTZ00112 948 RLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLT 1027 (1164)
T ss_pred HHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHHHhhhHHHHHHcCCHHHHHHHH
Confidence 874321 112223333443443344455555555443 1100011111223333 33344568888777665
Q ss_pred hhhccCCC-----CCHH-------HHHHHH----hcC-------chHHHHhhCCCcEee
Q 045634 305 DIACFFTG-----EDID-------FVRRIR----DDP-------SSLDTFVDKSLITIF 340 (353)
Q Consensus 305 ~la~fp~~-----~~~~-------~l~~~w----~~~-------~~l~~L~~~sLl~~~ 340 (353)
.+...-.. .... .+.... ..+ .++.+|...|+|-.+
T Consensus 1028 ALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv~plTqRV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1028 CLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGMCSNNELFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred HHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCeEEec
Confidence 44433221 2211 122211 112 778888888888765
No 44
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.66 E-value=2.6 Score=42.86 Aligned_cols=96 Identities=10% Similarity=0.081 Sum_probs=64.0
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-cccc-cCccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDK-CGVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. .....+.++..+. ...+.++|++|.+.. +... ......+++.+++.++..+.+.+.+-...
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg-- 194 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ-- 194 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--
Confidence 4556889999987 3456777777776 556677887776543 2211 12346789999999999888877663322
Q ss_pred CccHHHHHHHHHHHcCCChHHH
Q 045634 244 SHDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal 265 (353)
..-..+....|++.++|-+-.+
T Consensus 195 I~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 195 IAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 1223456778888999876433
No 45
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=89.38 E-value=2.8 Score=39.62 Aligned_cols=90 Identities=17% Similarity=0.276 Sum_probs=53.8
Q ss_pred cCceeeEeccccchH----------------HHHHHHHhhcC---CCCCcEEEEEeCcccc-----ccccCccceEEeCC
Q 045634 168 LMKVLIVLDDVHDEF----------------TELKSLARRLQ---FSGRSRIIITSRDKGV-----LDKCGVNNMYEVKG 223 (353)
Q Consensus 168 ~kr~LlVLDdv~~~~----------------~~~~~l~~~~~---~~~gs~IivTTR~~~v-----~~~~~~~~~~~l~~ 223 (353)
....+|+||+++. . ..+..+...+. ...+..||.||..... ......+..++++.
T Consensus 214 ~~p~il~iDEiD~-l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~ 292 (364)
T TIGR01242 214 KAPSIIFIDEIDA-IAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPL 292 (364)
T ss_pred cCCcEEEhhhhhh-hccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCC
Confidence 3567999999875 2 11223332222 1346678888875432 22112356789999
Q ss_pred CChhHHHHHHHHhhhccCCCC-ccHHHHHHHHHHHcCCCh
Q 045634 224 LKYNKALELFCRKAFRETNCS-HDLLELSEEVVRHADGNP 262 (353)
Q Consensus 224 L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~c~glP 262 (353)
.+.++..++|..++.+..... .. ...+++.+.|..
T Consensus 293 P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 293 PDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred cCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 999999999998875433221 12 345666676653
No 46
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.09 E-value=3.9 Score=40.27 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=62.5
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCc-ccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRD-KGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++=++|+|+++. .....+.+...+. ..+.+++|++|.+ +.+...+ .....+++.+++.++-.+.+...+-....
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi- 193 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI- 193 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-
Confidence 3555799999986 3456777877777 5666777766643 3343322 23467899999999988888877643221
Q ss_pred CccHHHHHHHHHHHcCCChH
Q 045634 244 SHDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPL 263 (353)
.-.++....|++.++|.+-
T Consensus 194 -~i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 194 -EHDEESLKLIAENSSGSMR 212 (491)
T ss_pred -CCCHHHHHHHHHHcCCCHH
Confidence 1234566788888988775
No 47
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=88.87 E-value=1.5 Score=34.50 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=24.9
Q ss_pred hcCceeeEeccccchH--HHHHHHHhhcC-C------CCCcEEEEEeCccc
Q 045634 167 QLMKVLIVLDDVHDEF--TELKSLARRLQ-F------SGRSRIIITSRDKG 208 (353)
Q Consensus 167 ~~kr~LlVLDdv~~~~--~~~~~l~~~~~-~------~~gs~IivTTR~~~ 208 (353)
..+..++++||++. . .....+...+. . ..+..+|+||....
T Consensus 82 ~~~~~~lilDe~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 82 KAKPGVLFIDEIDS-LSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred cCCCeEEEEeChhh-hhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 44678999999985 2 22223332222 1 36778888887654
No 48
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=88.81 E-value=3.3 Score=42.15 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=64.5
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcc-cccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDK-GVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. .....+.|+..+. .....++|++|.+. .+...+ .-...|.+++|+.++..+.+.+..-...
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-- 195 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-- 195 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--
Confidence 4566899999986 3566778877776 55566666655554 343222 2246899999999999988887653222
Q ss_pred CccHHHHHHHHHHHcCCChHHHH
Q 045634 244 SHDLLELSEEVVRHADGNPLALE 266 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal~ 266 (353)
.....+....|++.++|.+--+.
T Consensus 196 i~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 196 IPFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHH
Confidence 11234566788999999776443
No 49
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=88.00 E-value=3.3 Score=38.83 Aligned_cols=118 Identities=15% Similarity=0.215 Sum_probs=73.8
Q ss_pred EEEeEEe--ecCCccccccccccc----ccceecccCCchHHHHHHHHHHhhccCCCCCchHHHHHHHHhcCceeeEecc
Q 045634 104 IVIPVFY--QVDPSDVRKQRRSFG----EAFVHHENNFPDKVQKWRDALTEASNLSGYDSTESRIKKRLQLMKVLIVLDD 177 (353)
Q Consensus 104 ~vipI~g--gVgkt~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~l~~~L~~kr~LlVLDd 177 (353)
.-+-.+| |+|||.+.+....-. -.|+..+... ...+..|+++++..+ ...+.++|..|.+|.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-a~t~dvR~ife~aq~-----------~~~l~krkTilFiDE 230 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-AKTNDVRDIFEQAQN-----------EKSLTKRKTILFIDE 230 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-cchHHHHHHHHHHHH-----------HHhhhcceeEEEeHH
Confidence 3445566 999998777643322 2355544222 345666777665432 234567899999999
Q ss_pred ccc-hHHHHHHHHhhcCCCCCcEEEE--EeCcccccc---ccCccceEEeCCCChhHHHHHHHH
Q 045634 178 VHD-EFTELKSLARRLQFSGRSRIII--TSRDKGVLD---KCGVNNMYEVKGLKYNKALELFCR 235 (353)
Q Consensus 178 v~~-~~~~~~~l~~~~~~~~gs~Iiv--TTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~~ 235 (353)
|.. ...+-+.+++. -..|+-++| ||-++...- .+....++-++.|+.++-..++.+
T Consensus 231 iHRFNksQQD~fLP~--VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 231 IHRFNKSQQDTFLPH--VENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred hhhhhhhhhhcccce--eccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 986 34444444443 456766666 777765421 112346889999999999888877
No 50
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=87.75 E-value=1.3 Score=38.92 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=71.9
Q ss_pred CCCCCceeEEEeccccccccchHHHHHHHHHhC--Ccceeecc---ccccCCCCccHHHHHHhh--hcCeEEeeeccCcc
Q 045634 10 LTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRK--QIQFFIDD---EELEKGDEISPALFIAVE--TSDISVIILSKDYA 82 (353)
Q Consensus 10 ~~~~~~~dvFiSy~~~D~~~~f~~~l~~~L~~~--g~~~~~d~---~~~~~g~~~~~~i~~~i~--~s~~~i~v~S~~~~ 82 (353)
-.....||+=+||.|+- ++.++.+..+++.. -+..|.|- ..+-+++. ..+.+-+. .|+..++....+|.
T Consensus 172 d~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~sL--~~~L~~~Y~~rC~~~~VF~~~~Y~ 247 (329)
T COG4916 172 DSSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGSL--VSTLDPGYDIRCVVTTVFNTGSYI 247 (329)
T ss_pred cccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCccH--HHhcccccCceEEEEEEEeCCceE
Confidence 36778899999999985 56999999999843 46677775 22445542 23333333 57777888899999
Q ss_pred cchhhHhhhhhhhhccccCCcEEEeEEe-ecCCc---cccccccccc-ccce
Q 045634 83 SSKWCLNELVNILDCKKMNGKIVIPVFY-QVDPS---DVRKQRRSFG-EAFV 129 (353)
Q Consensus 83 ~s~~~~~El~~~~~~~~~~~~~vipI~g-gVgkt---~~~~~~~~f~-~~~~ 129 (353)
...||.-|-..+-.... -....||.+ .+|-+ -+.+..|+|+ +.++
T Consensus 248 ~K~~c~~E~~~~r~~~~--~d~~~rI~~~~~d~~a~dG~~~T~G~iD~~~~~ 297 (329)
T COG4916 248 CKSTCHIEGLEGRLNPI--LDTGFRIKYLYADNIAIDGGKQTPGHFDIDSPI 297 (329)
T ss_pred Eeeeeccchhhcccccc--ccccceEEEEecCCccccccccCCceeecCCcc
Confidence 99999877544433221 123566666 33333 2233346665 4343
No 51
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=86.82 E-value=2.1 Score=40.93 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=67.0
Q ss_pred cEEEeEEe--ecCCcccccccccccccceecccCCc----hHHHHHHHHHHhhccCCCCCchHHHHHHHHhcCceeeEec
Q 045634 103 KIVIPVFY--QVDPSDVRKQRRSFGEAFVHHENNFP----DKVQKWRDALTEASNLSGYDSTESRIKKRLQLMKVLIVLD 176 (353)
Q Consensus 103 ~~vipI~g--gVgkt~~~~~~~~f~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~~~~l~~~L~~kr~LlVLD 176 (353)
...+-++| |.|||++-+..|.....-.....-.. +-......++.. ..-+..++.. .-=++++|
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~--------~~~~~Fk~~y--~~dlllID 182 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD--------NEMEKFKEKY--SLDLLLID 182 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHh--------hhHHHHHHhh--ccCeeeec
Confidence 44666777 89999887766554311111110000 111111122211 1113444444 33478899
Q ss_pred cccc--hHHHH-HHHHhhcC--CCCCcEEEEEeCcccc-cc--------ccCccceEEeCCCChhHHHHHHHHhhhc
Q 045634 177 DVHD--EFTEL-KSLARRLQ--FSGRSRIIITSRDKGV-LD--------KCGVNNMYEVKGLKYNKALELFCRKAFR 239 (353)
Q Consensus 177 dv~~--~~~~~-~~l~~~~~--~~~gs~IivTTR~~~v-~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 239 (353)
|++- ..+.| +.+...+. ...|..||+|++...- .. .+...-++++.+++.+.-..++.+.+-.
T Consensus 183 Diq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 183 DIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred hHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 9975 12222 23333333 3445589999855332 11 1234568999999999999999886643
No 52
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=86.32 E-value=4.6 Score=40.81 Aligned_cols=97 Identities=12% Similarity=0.226 Sum_probs=54.9
Q ss_pred HHHHHhcCceeeEeccccc--hHHHH-HHHHhhcC--CCCCcEEEEEeCccc---------cccccCccceEEeCCCChh
Q 045634 162 IKKRLQLMKVLIVLDDVHD--EFTEL-KSLARRLQ--FSGRSRIIITSRDKG---------VLDKCGVNNMYEVKGLKYN 227 (353)
Q Consensus 162 l~~~L~~kr~LlVLDdv~~--~~~~~-~~l~~~~~--~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~~ 227 (353)
+++.+.+ -=+|+|||+.. ....| +.+...+. ...|..||+||.... +...+...-.++++..+.+
T Consensus 371 f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~E 449 (617)
T PRK14086 371 FRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELE 449 (617)
T ss_pred HHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHH
Confidence 3344433 34788899975 12222 23333333 344667888887531 1122234568899999999
Q ss_pred HHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCC
Q 045634 228 KALELFCRKAFRETNCSHDLLELSEEVVRHADGN 261 (353)
Q Consensus 228 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~gl 261 (353)
.-..++.+++-.... .--+++..-|++.+.+.
T Consensus 450 tR~aIL~kka~~r~l--~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 450 TRIAILRKKAVQEQL--NAPPEVLEFIASRISRN 481 (617)
T ss_pred HHHHHHHHHHHhcCC--CCCHHHHHHHHHhccCC
Confidence 999999888743321 11234455555555443
No 53
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=86.15 E-value=5.5 Score=36.90 Aligned_cols=95 Identities=16% Similarity=0.081 Sum_probs=59.5
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
.+-++|+||++. .....+.+...+. ....+++|+||.... +...+ .....+++.+++.++....+...+-.....
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~- 203 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD- 203 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 345899999976 2333445555554 455677888775432 22222 123568889999999988888765332211
Q ss_pred ccHHHHHHHHHHHcCCChHHH
Q 045634 245 HDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal 265 (353)
-..+....+++.++|.+-.+
T Consensus 204 -~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 204 -YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred -CCHHHHHHHHHHcCCCHHHH
Confidence 23567788888888876554
No 54
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=86.05 E-value=7.6 Score=34.03 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=70.7
Q ss_pred ecCCccccccccc-ccccceecccCCchHHHHHHHHHHhhccCCCCCchHHHHHHHHhcCceeeEeccccc-hHHHHHHH
Q 045634 111 QVDPSDVRKQRRS-FGEAFVHHENNFPDKVQKWRDALTEASNLSGYDSTESRIKKRLQLMKVLIVLDDVHD-EFTELKSL 188 (353)
Q Consensus 111 gVgkt~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~l~~~L~~kr~LlVLDdv~~-~~~~~~~l 188 (353)
|+|||.+.+...+ .+..|...+...-++...+...+.++ + ++-+|.+|.+.. ...+-+.+
T Consensus 60 G~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l-----------------~-~~~ILFIDEIHRlnk~~qe~L 121 (233)
T PF05496_consen 60 GLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILTNL-----------------K-EGDILFIDEIHRLNKAQQEIL 121 (233)
T ss_dssp TSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--------------------TT-EEEECTCCC--HHHHHHH
T ss_pred ccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHHhc-----------------C-CCcEEEEechhhccHHHHHHH
Confidence 8999987766433 23444433322112222233333322 2 345677799876 34444555
Q ss_pred HhhcC---------CCCC-----------cEEEEEeCccccccccCc--cceEEeCCCChhHHHHHHHHhhhccCCCCcc
Q 045634 189 ARRLQ---------FSGR-----------SRIIITSRDKGVLDKCGV--NNMYEVKGLKYNKALELFCRKAFRETNCSHD 246 (353)
Q Consensus 189 ~~~~~---------~~~g-----------s~IivTTR~~~v~~~~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 246 (353)
.+... .+++ +-|=.|||...+...+.. .-..+++.-+.+|-.++..+.+..-+ .+-
T Consensus 122 lpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i 199 (233)
T PF05496_consen 122 LPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEI 199 (233)
T ss_dssp HHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE
T ss_pred HHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCc
Confidence 54432 1221 234457887665544422 23458999999999999987763322 334
Q ss_pred HHHHHHHHHHHcCCChHHH
Q 045634 247 LLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 247 ~~~~~~~i~~~c~glPLal 265 (353)
..+.+.+|++.|.|-|--.
T Consensus 200 ~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 200 DEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp -HHHHHHHHHCTTTSHHHH
T ss_pred CHHHHHHHHHhcCCChHHH
Confidence 5678999999999999643
No 55
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=86.04 E-value=3.4 Score=40.37 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=58.2
Q ss_pred HHHHHHhcCceeeEeccccc--hHH-HHHHHHhhcC--CCCCcEEEEEeCccc---------cccccCccceEEeCCCCh
Q 045634 161 RIKKRLQLMKVLIVLDDVHD--EFT-ELKSLARRLQ--FSGRSRIIITSRDKG---------VLDKCGVNNMYEVKGLKY 226 (353)
Q Consensus 161 ~l~~~L~~kr~LlVLDdv~~--~~~-~~~~l~~~~~--~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~ 226 (353)
.+.+.++ +.-+|+|||+.. ... ..+.+...+. ...|..||+||.... +...+.....+++++.+.
T Consensus 204 ~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~ 282 (450)
T PRK00149 204 EFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDL 282 (450)
T ss_pred HHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCH
Confidence 3444444 344889999975 011 1233333332 234556888876532 112223345789999999
Q ss_pred hHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChH
Q 045634 227 NKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 227 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPL 263 (353)
++-.+++.+.+-... ..-.+++..-|++.+.|..-
T Consensus 283 ~~r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 283 ETRIAILKKKAEEEG--IDLPDEVLEFIAKNITSNVR 317 (450)
T ss_pred HHHHHHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHH
Confidence 999999998874322 11234566777777776544
No 56
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.54 E-value=6.6 Score=38.95 Aligned_cols=96 Identities=16% Similarity=0.128 Sum_probs=64.5
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCc-ccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRD-KGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. ....++.+...+. ......+|++|.. ..+...+ .....+++.+++.++....+...+-.....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3566899999986 2456777877776 5555565655543 3333322 224589999999999999998876433211
Q ss_pred CccHHHHHHHHHHHcCCChHHH
Q 045634 244 SHDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal 265 (353)
-..+....|++.++|.+--+
T Consensus 195 --i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 195 --AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred --CCHHHHHHHHHHcCCCHHHH
Confidence 23466788999999988544
No 57
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=85.49 E-value=4 Score=40.42 Aligned_cols=94 Identities=14% Similarity=0.187 Sum_probs=63.6
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEE-EeCccccccccC-ccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIII-TSRDKGVLDKCG-VNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~Iiv-TTR~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. ....++.+...+. ..+.+.+|+ ||+.+.+...+. ....+++.+++.++....+...+-....
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi- 205 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL- 205 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-
Confidence 4567899999987 3566888887776 556666655 444444443332 2357899999999999999887743221
Q ss_pred CccHHHHHHHHHHHcCCChH
Q 045634 244 SHDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPL 263 (353)
.-..+....|++.++|.+-
T Consensus 206 -~ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 206 -KTDIEALRIIAYKSEGSAR 224 (507)
T ss_pred -CCCHHHHHHHHHHcCCCHH
Confidence 1234556778888988764
No 58
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=84.98 E-value=3.5 Score=40.26 Aligned_cols=100 Identities=8% Similarity=0.053 Sum_probs=62.6
Q ss_pred ceeeEeccccch---HHHHHHHHhhcC--CCCCcEEEEEeCccc-cc--------cccCccceEEeCCCChhHHHHHHHH
Q 045634 170 KVLIVLDDVHDE---FTELKSLARRLQ--FSGRSRIIITSRDKG-VL--------DKCGVNNMYEVKGLKYNKALELFCR 235 (353)
Q Consensus 170 r~LlVLDdv~~~---~~~~~~l~~~~~--~~~gs~IivTTR~~~-v~--------~~~~~~~~~~l~~L~~~ea~~Lf~~ 235 (353)
.-+||+||+... ....+.+...+. ...|..||+|+.... .. ..+...-.+++++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 458899999751 122234444333 345567888875432 11 1122445778999999999999998
Q ss_pred hhhccCCCCccHHHHHHHHHHHcCCChHHHHHHh
Q 045634 236 KAFRETNCSHDLLELSEEVVRHADGNPLALEVLA 269 (353)
Q Consensus 236 ~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g 269 (353)
.+-.......-.++...-|++.++|.|-.+.-+-
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 8743221112335778889999999887765443
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.79 E-value=6.4 Score=37.25 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=62.7
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++-++|+|+++. ....++.+...+. .....++|++|.+.. +.... +....+++.+++.++..+.+...+-... .
T Consensus 119 ~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~ 196 (363)
T PRK14961 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--I 196 (363)
T ss_pred CceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--C
Confidence 456899999987 2345777777776 556667777765433 32222 1235789999999999888877653322 1
Q ss_pred ccHHHHHHHHHHHcCCChHH
Q 045634 245 HDLLELSEEVVRHADGNPLA 264 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLa 264 (353)
.-.++.+..|++.++|.|-.
T Consensus 197 ~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 197 DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred CCCHHHHHHHHHHcCCCHHH
Confidence 12345677889999998863
No 60
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=84.42 E-value=2.2 Score=33.37 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=27.9
Q ss_pred HHHHHHHhcCc-eeeEeccccchH---HHHHHHHhhcCCCCCcEEEEEeCc
Q 045634 160 SRIKKRLQLMK-VLIVLDDVHDEF---TELKSLARRLQFSGRSRIIITSRD 206 (353)
Q Consensus 160 ~~l~~~L~~kr-~LlVLDdv~~~~---~~~~~l~~~~~~~~gs~IivTTR~ 206 (353)
+.+.+.+...+ .+||+|+++. . ..++.+.... ...+.++|+..+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~-l~~~~~l~~l~~l~-~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADH-LFSDEFLEFLRSLL-NESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHH-HHTHHHHHHHHHHT-CSCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHh-cCCHHHHHHHHHHH-hCCCCeEEEEECh
Confidence 55666665554 5999999987 4 2333333222 4667778877654
No 61
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=84.26 E-value=4.7 Score=41.71 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=65.7
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccccc-ccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKGVL-DKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
+.-++|||+++. ....++.++..+. .....++|+||.+..-. ..+ .-...++++.++.++..+.|.+.+-... .
T Consensus 119 r~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg--I 196 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER--I 196 (830)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC--C
Confidence 445788999987 3455788887776 56678888877765432 222 2235789999999999998887663322 1
Q ss_pred ccHHHHHHHHHHHcCCCh-HHHHH
Q 045634 245 HDLLELSEEVVRHADGNP-LALEV 267 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glP-Lal~~ 267 (353)
.-..+..+.|++.++|.. -|+.+
T Consensus 197 ~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 197 AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 123566788889998854 45544
No 62
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=84.12 E-value=4.5 Score=39.46 Aligned_cols=96 Identities=8% Similarity=0.003 Sum_probs=51.6
Q ss_pred HHHHHhcCceeeEeccccch--H-HHHHHHHhhcC--CCCCcEEEEEeCcc-cc--------ccccCccceEEeCCCChh
Q 045634 162 IKKRLQLMKVLIVLDDVHDE--F-TELKSLARRLQ--FSGRSRIIITSRDK-GV--------LDKCGVNNMYEVKGLKYN 227 (353)
Q Consensus 162 l~~~L~~kr~LlVLDdv~~~--~-~~~~~l~~~~~--~~~gs~IivTTR~~-~v--------~~~~~~~~~~~l~~L~~~ 227 (353)
+++.++ +.-+|++||+... . ...+.+...+. ...|..||+||... .- ...+.....+++++++.+
T Consensus 196 f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e 274 (445)
T PRK12422 196 FRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKE 274 (445)
T ss_pred HHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHH
Confidence 444333 3457888998651 1 11223333222 23466788888542 11 112233467889999999
Q ss_pred HHHHHHHHhhhccCCCCccHHHHHHHHHHHcCC
Q 045634 228 KALELFCRKAFRETNCSHDLLELSEEVVRHADG 260 (353)
Q Consensus 228 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~g 260 (353)
+-..++.+.+-.... .-.+++..-|++.+.+
T Consensus 275 ~r~~iL~~k~~~~~~--~l~~evl~~la~~~~~ 305 (445)
T PRK12422 275 GLRSFLERKAEALSI--RIEETALDFLIEALSS 305 (445)
T ss_pred HHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCC
Confidence 999999887743221 1123344445554443
No 63
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=83.45 E-value=7.7 Score=36.01 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=62.9
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++=++|+|+++. ....-+.++..+. ..+++.+|++|.+.. +...+ .-...+.+.+++.+++.+.+.... .
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------~ 186 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------V 186 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------C
Confidence 455788999986 3455667777776 666777777776543 44333 223578889999999988886531 1
Q ss_pred ccHHHHHHHHHHHcCCChHHHHHHh
Q 045634 245 HDLLELSEEVVRHADGNPLALEVLA 269 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal~~~g 269 (353)
....+..++..++|.|+....+.
T Consensus 187 --~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 --SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred --ChHHHHHHHHHcCCCHHHHHHHh
Confidence 12336678999999998665544
No 64
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.40 E-value=5.1 Score=34.94 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=57.1
Q ss_pred ceeeEeccccc-hHHHHHHHHhhcC--CCCCc-EEEEEeCcccccc--------ccCccceEEeCCCChhHHHHHHHHhh
Q 045634 170 KVLIVLDDVHD-EFTELKSLARRLQ--FSGRS-RIIITSRDKGVLD--------KCGVNNMYEVKGLKYNKALELFCRKA 237 (353)
Q Consensus 170 r~LlVLDdv~~-~~~~~~~l~~~~~--~~~gs-~IivTTR~~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a 237 (353)
.-++|+||++. ....-+.+...+. ...+. .+|+|++...... .+.....+++++++.++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 34789999975 1222233433332 23344 3666666433211 11123578999999988777776544
Q ss_pred hccCCCCccHHHHHHHHHHHcCCChHHHHHHhh
Q 045634 238 FRETNCSHDLLELSEEVVRHADGNPLALEVLAN 270 (353)
Q Consensus 238 ~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~ 270 (353)
-... ..-.++....+++.+.|.+..+..+-.
T Consensus 171 ~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~ 201 (227)
T PRK08903 171 AERG--LQLADEVPDYLLTHFRRDMPSLMALLD 201 (227)
T ss_pred HHcC--CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 2211 222346777888889999988765544
No 65
>PRK05642 DNA replication initiation factor; Validated
Probab=83.30 E-value=7.5 Score=34.27 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=56.7
Q ss_pred eeEeccccc--hHHHHHH-HHhhcC--CCCCcEEEEEeCcccc-ccc--------cCccceEEeCCCChhHHHHHHHHhh
Q 045634 172 LIVLDDVHD--EFTELKS-LARRLQ--FSGRSRIIITSRDKGV-LDK--------CGVNNMYEVKGLKYNKALELFCRKA 237 (353)
Q Consensus 172 LlVLDdv~~--~~~~~~~-l~~~~~--~~~gs~IivTTR~~~v-~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a 237 (353)
+||+||+.. ....|+. +...+. ...|..+|+|++...- ... +.....+++++++.++-.+++..++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 678899974 1234433 433333 3457788998875332 111 1234578999999999999998666
Q ss_pred hccCCCCccHHHHHHHHHHHcCCChHHH
Q 045634 238 FRETNCSHDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 238 ~~~~~~~~~~~~~~~~i~~~c~glPLal 265 (353)
..... .-.++...-+++.+.|-.-.+
T Consensus 180 ~~~~~--~l~~ev~~~L~~~~~~d~r~l 205 (234)
T PRK05642 180 SRRGL--HLTDEVGHFILTRGTRSMSAL 205 (234)
T ss_pred HHcCC--CCCHHHHHHHHHhcCCCHHHH
Confidence 44321 122467777888877765444
No 66
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.21 E-value=8.2 Score=38.35 Aligned_cols=96 Identities=13% Similarity=0.038 Sum_probs=60.1
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcc-cccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDK-GVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
++.-++|+|+++. .....+.++..+. ..+.+++|++|.+. .+...+ .....+++++++.++-...+...+-.....
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4555788999986 3556777777776 55667777665443 333222 123568899999888777666554322211
Q ss_pred CccHHHHHHHHHHHcCCChHHH
Q 045634 244 SHDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal 265 (353)
-..+....|++.++|.+--+
T Consensus 198 --~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 198 --FENAALDLLARAANGSVRDA 217 (509)
T ss_pred --CCHHHHHHHHHHcCCcHHHH
Confidence 12345677888888877544
No 67
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=83.16 E-value=34 Score=30.61 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=85.9
Q ss_pred cCCcEEEeEEe--ecCCccccc-cccccc--ccceecccCC----chHHHHHHHHHHhhccCCCCCchH------HHHHH
Q 045634 100 MNGKIVIPVFY--QVDPSDVRK-QRRSFG--EAFVHHENNF----PDKVQKWRDALTEASNLSGYDSTE------SRIKK 164 (353)
Q Consensus 100 ~~~~~vipI~g--gVgkt~~~~-~~~~f~--~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~~------~~l~~ 164 (353)
..++.++-|.| |-|||.+++ +...+. +.-+....+. ....+.|...+.. .+-+.... ..|..
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~---~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLES---QPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhcc---CccchhHHHHHHHHHHHHH
Confidence 34455777777 778887666 334444 2222111111 1223334333332 12222211 23333
Q ss_pred HH-hcCc-eeeEeccccc-hHHHHHHHHhhcC-CCCCc---EEEEEeCccc-------cccccC-ccce-EEeCCCChhH
Q 045634 165 RL-QLMK-VLIVLDDVHD-EFTELKSLARRLQ-FSGRS---RIIITSRDKG-------VLDKCG-VNNM-YEVKGLKYNK 228 (353)
Q Consensus 165 ~L-~~kr-~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs---~IivTTR~~~-------v~~~~~-~~~~-~~l~~L~~~e 228 (353)
.. +++| +.++.|+..+ ..+.++.++-... -..++ +|+..-.-+- +....+ -..+ |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 33 4567 8999999986 3445555543332 11111 2333221110 011111 1123 8999999998
Q ss_pred HHHHHHHhhhccCCCCc-cHHHHHHHHHHHcCCChHHHHHHhhc
Q 045634 229 ALELFCRKAFRETNCSH-DLLELSEEVVRHADGNPLALEVLANN 271 (353)
Q Consensus 229 a~~Lf~~~a~~~~~~~~-~~~~~~~~i~~~c~glPLal~~~g~~ 271 (353)
...++..+.-+...+.+ -..+....|.....|.|.++..++..
T Consensus 205 t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 87777766544332222 23456777888899999999877655
No 68
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=83.14 E-value=6.9 Score=36.57 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=62.6
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++-++|+|+++. .....+.+...+. ..+.+.+|++|.+.. +...+ .....+++.+++.++..+.+...+-.....
T Consensus 117 ~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~- 195 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK- 195 (355)
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-
Confidence 455888999876 2355667776666 455667677765443 22222 123578889999999888888766332211
Q ss_pred ccHHHHHHHHHHHcCCChHHHHH
Q 045634 245 HDLLELSEEVVRHADGNPLALEV 267 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal~~ 267 (353)
-.++.+..+++.++|.|..+..
T Consensus 196 -i~~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 196 -IEDEALELIARAADGSLRDALS 217 (355)
T ss_pred -CCHHHHHHHHHHcCCChHHHHH
Confidence 2246778889999998865543
No 69
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=82.80 E-value=44 Score=31.68 Aligned_cols=234 Identities=14% Similarity=0.152 Sum_probs=113.2
Q ss_pred EeEEe--ecCCccc-cccccccc-----c-cceecccCCchHHHHHHHHHHhhccCCC--CCchH--HHHHHHHh--cCc
Q 045634 106 IPVFY--QVDPSDV-RKQRRSFG-----E-AFVHHENNFPDKVQKWRDALTEASNLSG--YDSTE--SRIKKRLQ--LMK 170 (353)
Q Consensus 106 ipI~g--gVgkt~~-~~~~~~f~-----~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~~--~~l~~~L~--~kr 170 (353)
+-|.| |.|||.. +.....+. . ..-.+........+.+..++.++.+.+. +...+ +.+.+.+. ++.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~ 124 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKT 124 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCe
Confidence 55567 9999932 22222221 1 1112222334556666666666654433 33222 55666664 478
Q ss_pred eeeEeccccc--hHHHHHHHHhhcC-CC-CCcEEEE--EeCccccccccC-------ccceEEeCCCChhHHHHHHHHhh
Q 045634 171 VLIVLDDVHD--EFTELKSLARRLQ-FS-GRSRIII--TSRDKGVLDKCG-------VNNMYEVKGLKYNKALELFCRKA 237 (353)
Q Consensus 171 ~LlVLDdv~~--~~~~~~~l~~~~~-~~-~gs~Iiv--TTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a 237 (353)
+++|||+++. .... +.+..-+. .. .+++|++ .+-+-.....+. ....+..++=+.+|-...+..++
T Consensus 125 ~IvvLDEid~L~~~~~-~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 125 VIVILDEVDALVDKDG-EVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERV 203 (366)
T ss_pred EEEEEcchhhhccccc-hHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHH
Confidence 9999999987 1111 22322222 22 2444433 333322221111 11235667777777777777665
Q ss_pred ---hccCCCCccHHH-HHHHHHHHcCCChHHHHHHhhc---ccccc-ccCCCchH--------HHHHHhhhccCCHhHHH
Q 045634 238 ---FRETNCSHDLLE-LSEEVVRHADGNPLALEVLANN---NGKLM-KLISEPNI--------YNVLKISYDELNLEEKK 301 (353)
Q Consensus 238 ---~~~~~~~~~~~~-~~~~i~~~c~glPLal~~~g~~---~~~~l-~~~~~~~v--------~~~l~~sy~~L~~~~k~ 301 (353)
|......++.-+ ++...++..|-.=.||.++-.. +.... .......+ .....-....||.+.|-
T Consensus 204 ~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~L~~~~ki 283 (366)
T COG1474 204 EEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLEEVLKTLPLHQKI 283 (366)
T ss_pred HhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHHHHcCCHhHHH
Confidence 222323333333 3333444444555566555544 11111 11111111 22344457888888877
Q ss_pred HHhhhhccCCCCCHHH-------HHHHHhc-C----chHHHHhhCCCcEee
Q 045634 302 TFLDIACFFTGEDIDF-------VRRIRDD-P----SSLDTFVDKSLITIF 340 (353)
Q Consensus 302 ~fl~la~fp~~~~~~~-------l~~~w~~-~----~~l~~L~~~sLl~~~ 340 (353)
.+..++..-.+..... +...... . +.+++|...+++...
T Consensus 284 ~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 284 VLLAIVELTVEISTGELYDVYESLCERLRTSQRRFSDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHHHHHHHHHhcCeEEee
Confidence 7655554423333222 2222211 1 788899999999876
No 70
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=82.38 E-value=6.7 Score=38.20 Aligned_cols=98 Identities=14% Similarity=0.132 Sum_probs=54.8
Q ss_pred HHHHHhcCceeeEeccccch--HHHH-HHHHhhcC--CCCCcEEEEEeC-cccccc--------ccCccceEEeCCCChh
Q 045634 162 IKKRLQLMKVLIVLDDVHDE--FTEL-KSLARRLQ--FSGRSRIIITSR-DKGVLD--------KCGVNNMYEVKGLKYN 227 (353)
Q Consensus 162 l~~~L~~kr~LlVLDdv~~~--~~~~-~~l~~~~~--~~~gs~IivTTR-~~~v~~--------~~~~~~~~~l~~L~~~ 227 (353)
.++....+.-+|++||+... ...+ +.+...+. ...|..||+||. .+.-.. .+.....+++++.+.+
T Consensus 187 f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e 266 (440)
T PRK14088 187 FREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_pred HHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHH
Confidence 34444444568999999741 1111 22332222 234557888874 322211 1223457889999999
Q ss_pred HHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCC
Q 045634 228 KALELFCRKAFRETNCSHDLLELSEEVVRHADGN 261 (353)
Q Consensus 228 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~gl 261 (353)
+-..++.+.+-.... .-.+++..-|++.+.|.
T Consensus 267 ~r~~IL~~~~~~~~~--~l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 267 TRKKIARKMLEIEHG--ELPEEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHHHHHHHhcCC--CCCHHHHHHHHhccccC
Confidence 999999888743221 11245566666666654
No 71
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=82.28 E-value=5.2 Score=28.95 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=48.3
Q ss_pred eEEEeccccccccchHHHHHHHHHhCCcceeecccccc-CCCCccHHHHHHhhhcCeEEeeeccCcccc
Q 045634 17 KVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELE-KGDEISPALFIAVETSDISVIILSKDYASS 84 (353)
Q Consensus 17 dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~-~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s 84 (353)
.||||=.-.|-. .--..|.+.+.+.|..+..-+ .+. ++.+..+.+.+.|++|.+.|.++..+|...
T Consensus 1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e-~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~ 67 (83)
T PF13271_consen 1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGME-FFPASDQSPLEICLKEVDECDIFILILGNRYGSV 67 (83)
T ss_pred CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeee-eecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence 389998888853 356678888888887654322 122 355666789999999999999999999653
No 72
>PRK08116 hypothetical protein; Validated
Probab=81.82 E-value=1.8 Score=39.11 Aligned_cols=45 Identities=24% Similarity=0.306 Sum_probs=25.0
Q ss_pred HHHHHHhcCceeeEeccccch-HHHH--HHHHhhcC--CCCCcEEEEEeCc
Q 045634 161 RIKKRLQLMKVLIVLDDVHDE-FTEL--KSLARRLQ--FSGRSRIIITSRD 206 (353)
Q Consensus 161 ~l~~~L~~kr~LlVLDdv~~~-~~~~--~~l~~~~~--~~~gs~IivTTR~ 206 (353)
.+.+.+.+-. ||||||+..+ ...| +.+...+. ...|..+|+||..
T Consensus 171 ~~~~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 171 EIIRSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HHHHHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3444455444 8999999421 2233 23333333 3456679999854
No 73
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=81.72 E-value=11 Score=36.24 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=61.2
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++-++++|+++. .....+.+...+. ..++..+|++|.+.. +...+ .-...+.+.+++.++..+.+.... +
T Consensus 117 ~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~----- 190 (394)
T PRK07940 117 RWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G----- 190 (394)
T ss_pred CcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C-----
Confidence 444777899987 3445566777666 566676777666643 33332 223588999999999988887432 1
Q ss_pred ccHHHHHHHHHHHcCCChHHHHHH
Q 045634 245 HDLLELSEEVVRHADGNPLALEVL 268 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal~~~ 268 (353)
...+.+..++..++|.|.....+
T Consensus 191 -~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 191 -VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11355778899999999755433
No 74
>PRK04132 replication factor C small subunit; Provisional
Probab=81.50 E-value=16 Score=38.63 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=64.0
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
+.-++|+|+++. .....+.|+..+. ....+++|+++.+.. +.... .-...+.+.+++.++-...+.+.+-....
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-- 707 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-- 707 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--
Confidence 346899999997 3556777777776 566777777665543 33222 22468899999999888887766532221
Q ss_pred ccHHHHHHHHHHHcCCChHHH
Q 045634 245 HDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal 265 (353)
.-..+....|++.|+|-+-..
T Consensus 708 ~i~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 708 ELTEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred CCCHHHHHHHHHHcCCCHHHH
Confidence 112457788999999987433
No 75
>PRK06620 hypothetical protein; Validated
Probab=80.49 E-value=4.9 Score=34.96 Aligned_cols=90 Identities=9% Similarity=0.035 Sum_probs=53.5
Q ss_pred ceeeEeccccchHHHHHHHHhhcC--CCCCcEEEEEeCccccc-------cccCccceEEeCCCChhHHHHHHHHhhhcc
Q 045634 170 KVLIVLDDVHDEFTELKSLARRLQ--FSGRSRIIITSRDKGVL-------DKCGVNNMYEVKGLKYNKALELFCRKAFRE 240 (353)
Q Consensus 170 r~LlVLDdv~~~~~~~~~l~~~~~--~~~gs~IivTTR~~~v~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 240 (353)
.-++++||+.. ..+ ..+...+. ...|..||+|++...-. ..+....++++++++.++-..++.+.+-..
T Consensus 86 ~d~lliDdi~~-~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIEN-WQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEecccc-chH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 35788899976 322 12222222 34567899998755432 111234579999999999888887776422
Q ss_pred CCCCccHHHHHHHHHHHcCCChH
Q 045634 241 TNCSHDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 241 ~~~~~~~~~~~~~i~~~c~glPL 263 (353)
. ..-.+++..-|++.+.|---
T Consensus 164 ~--l~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 164 S--VTISRQIIDFLLVNLPREYS 184 (214)
T ss_pred C--CCCCHHHHHHHHHHccCCHH
Confidence 1 11234666777777766543
No 76
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=79.26 E-value=16 Score=33.61 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=38.8
Q ss_pred CceeeEeccccch--HHHHHHHHhhcC-CCCCcEEEEEeCccccc-ccc-CccceEEeCCCChhHHHHHHHH
Q 045634 169 MKVLIVLDDVHDE--FTELKSLARRLQ-FSGRSRIIITSRDKGVL-DKC-GVNNMYEVKGLKYNKALELFCR 235 (353)
Q Consensus 169 kr~LlVLDdv~~~--~~~~~~l~~~~~-~~~gs~IivTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~~ 235 (353)
.+-++|+|+++.- ....+.+...+. ...++++|+||...... ..+ .....+.++..+.++..+++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 4557889999861 223344444444 56678888888654321 111 1223567777777777666543
No 77
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=76.12 E-value=17 Score=37.15 Aligned_cols=110 Identities=14% Similarity=0.042 Sum_probs=66.9
Q ss_pred HHHHHHHhcCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEE--EeCcccccc-cc-CccceEEeCCCChhHHHHHH
Q 045634 160 SRIKKRLQLMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIII--TSRDKGVLD-KC-GVNNMYEVKGLKYNKALELF 233 (353)
Q Consensus 160 ~~l~~~L~~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~Iiv--TTR~~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf 233 (353)
..|.+.+.+++++++.|+.|. +...|+.+...+. ..+...+++ ||++..... .+ .....+.+.+++.+|.+.++
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il 362 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHH
Confidence 577888888888888777665 2445766665555 444444555 566544211 11 11236788999999999999
Q ss_pred HHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhc
Q 045634 234 CRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANN 271 (353)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~ 271 (353)
.+.+-..... -..+....|.+++..-+-|+..++..
T Consensus 363 ~~~a~~~~v~--ls~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 363 LNAAEKINVH--LAAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9876432211 12345555666665556666666444
No 78
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=75.50 E-value=11 Score=36.26 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=47.1
Q ss_pred CceeeEeccccchHHHHHHHHhhcC-CCCCcEEEEEeCcccccccc------CccceEEeCCCChhHHHHH
Q 045634 169 MKVLIVLDDVHDEFTELKSLARRLQ-FSGRSRIIITSRDKGVLDKC------GVNNMYEVKGLKYNKALEL 232 (353)
Q Consensus 169 kr~LlVLDdv~~~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~~------~~~~~~~l~~L~~~ea~~L 232 (353)
++.+++||.|.. ...|+.....+. .++. +|++|+-+....... |-...+++-||+-.|-..+
T Consensus 94 ~~~yifLDEIq~-v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQN-VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccC-chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 678999999999 888888777776 5555 888888776653222 3456789999999988764
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.25 E-value=17 Score=38.43 Aligned_cols=98 Identities=12% Similarity=0.090 Sum_probs=66.6
Q ss_pred hcCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCC
Q 045634 167 QLMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETN 242 (353)
Q Consensus 167 ~~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 242 (353)
.+++-++|+|+++. .....+.|+..+. .....++|++|.+.. +...+ .....|++++|+.++....+.+.+-...
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg- 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ- 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-
Confidence 35677899999986 3567788887776 556666666655543 43222 1236899999999999988887653221
Q ss_pred CCccHHHHHHHHHHHcCCChHHHH
Q 045634 243 CSHDLLELSEEVVRHADGNPLALE 266 (353)
Q Consensus 243 ~~~~~~~~~~~i~~~c~glPLal~ 266 (353)
..-..+.+..|++.++|.|--+.
T Consensus 196 -I~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 196 -LPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHH
Confidence 22234677889999999885433
No 80
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=74.66 E-value=24 Score=32.75 Aligned_cols=92 Identities=11% Similarity=0.157 Sum_probs=63.7
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++=.+|+|+++. .....+.+...+. ..+++.+|++|.+.. +..++ .-...+.+.+++.++..+.+.... .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~------~ 181 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG------I 181 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC------C
Confidence 344678899986 3567788888887 677777777776643 44443 234578999999999998886532 1
Q ss_pred ccHHHHHHHHHHHcCCChHHHHHHhh
Q 045634 245 HDLLELSEEVVRHADGNPLALEVLAN 270 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal~~~g~ 270 (353)
. .+..++..++|.|+....+..
T Consensus 182 ~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 182 T----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred c----hHHHHHHHcCCCHHHHHHHhC
Confidence 1 135678899999987765543
No 81
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=72.72 E-value=9.5 Score=36.03 Aligned_cols=129 Identities=12% Similarity=0.191 Sum_probs=61.7
Q ss_pred EEeEEe--ecCCcccccc-cccc--cccceecccCCchHHHHHHHHHHhh--ccCCCCCchH---------HHHHH--HH
Q 045634 105 VIPVFY--QVDPSDVRKQ-RRSF--GEAFVHHENNFPDKVQKWRDALTEA--SNLSGYDSTE---------SRIKK--RL 166 (353)
Q Consensus 105 vipI~g--gVgkt~~~~~-~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~~---------~~l~~--~L 166 (353)
++-|+| |-|||.+-++ ...- ..+|..+...+ .-...|..++.++ ++..|..... ..+.+ ..
T Consensus 32 ~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecf-t~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~ 110 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECF-TYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAA 110 (438)
T ss_pred eEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhc-cHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHh
Confidence 445666 7888843332 2222 24555555443 3344556666665 4444432221 12222 12
Q ss_pred h--cCceeeEeccccchHHHHHHH-----HhhcC--CCCCcEEEEEeCccc---cccccCcc--ceEEeCCCChhHHHHH
Q 045634 167 Q--LMKVLIVLDDVHDEFTELKSL-----ARRLQ--FSGRSRIIITSRDKG---VLDKCGVN--NMYEVKGLKYNKALEL 232 (353)
Q Consensus 167 ~--~kr~LlVLDdv~~~~~~~~~l-----~~~~~--~~~gs~IivTTR~~~---v~~~~~~~--~~~~l~~L~~~ea~~L 232 (353)
. ++.++|||||++. ..+.+.+ ..... ..+.. +|+++--.. -...+|.. .++..+.-+.+|-.++
T Consensus 111 t~~d~~~~liLDnad~-lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~I 188 (438)
T KOG2543|consen 111 TNRDQKVFLILDNADA-LRDMDAILLQCLFRLYELLNEPTI-VIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVI 188 (438)
T ss_pred hccCceEEEEEcCHHh-hhccchHHHHHHHHHHHHhCCCce-EEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHH
Confidence 2 4589999999987 4333322 11111 23333 333332211 11112332 2455677778887777
Q ss_pred HHHh
Q 045634 233 FCRK 236 (353)
Q Consensus 233 f~~~ 236 (353)
+.+.
T Consensus 189 l~~~ 192 (438)
T KOG2543|consen 189 LSRD 192 (438)
T ss_pred HhcC
Confidence 7653
No 82
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=72.49 E-value=16 Score=37.54 Aligned_cols=96 Identities=11% Similarity=0.086 Sum_probs=61.3
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. .....+.++..+. ....+++|++|.+.. +...+ +....+++..++.++....+.+.+-....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi- 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI- 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 4566899999987 2344666666665 445666777665443 32221 22246788899999998888876633221
Q ss_pred CccHHHHHHHHHHHcCCChHHH
Q 045634 244 SHDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal 265 (353)
.-..+....|++.++|.+.-+
T Consensus 197 -~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 197 -AYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred -CcCHHHHHHHHHHhCCCHHHH
Confidence 123456788999999887543
No 83
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.41 E-value=17 Score=35.71 Aligned_cols=94 Identities=12% Similarity=0.044 Sum_probs=62.2
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeC-cccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSR-DKGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR-~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
++.-++|+|+++. ....++.++..+. .......|++|. ...+...+ .-...|.+.+++.++..+.+.+.+-...
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-- 197 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN-- 197 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--
Confidence 4566899999987 3566888877776 444555554444 34443332 1235799999999998888877663322
Q ss_pred CccHHHHHHHHHHHcCCChH
Q 045634 244 SHDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPL 263 (353)
..-..+....|++.++|.+-
T Consensus 198 i~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 198 VQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred CCCCHHHHHHHHHHcCChHH
Confidence 11234567889999999874
No 84
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=71.98 E-value=30 Score=34.61 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=63.6
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++-++|+|+++. .....+.++..+. ..+.+++|++|.+.. +.... .....+++.+++.++..+.+...+-....
T Consensus 117 ~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-- 194 (535)
T PRK08451 117 RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-- 194 (535)
T ss_pred CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--
Confidence 455889999986 3556777777776 566777777776642 22211 12457899999999988888766533221
Q ss_pred ccHHHHHHHHHHHcCCChHHH
Q 045634 245 HDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal 265 (353)
.-..+.+..|++.++|.+--+
T Consensus 195 ~i~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 195 SYEPEALEILARSGNGSLRDT 215 (535)
T ss_pred CCCHHHHHHHHHHcCCcHHHH
Confidence 123466788899999988444
No 85
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=71.78 E-value=4.1 Score=35.32 Aligned_cols=45 Identities=27% Similarity=0.435 Sum_probs=29.5
Q ss_pred CceeeEeccccc--hHHHHHHHHhhcC-CCCCcEEEEEeCcccccccc
Q 045634 169 MKVLIVLDDVHD--EFTELKSLARRLQ-FSGRSRIIITSRDKGVLDKC 213 (353)
Q Consensus 169 kr~LlVLDdv~~--~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~~ 213 (353)
..-++||||++. +......+...+. ...++.+||||.++.+....
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345889999987 3455566666665 56678999999998877654
No 86
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=71.07 E-value=31 Score=32.35 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=60.8
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCc-ccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRD-KGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++=.+|+|+++. .....+.++..+. ..+++.+|++|.+ ..+..++ .-...+.+.+++.++..+.+.... . .
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~-~ 206 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V-A 206 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-C
Confidence 344678899986 4677888888887 6777777766665 4444333 223678999999999998887642 1 1
Q ss_pred ccHHHHHHHHHHHcCCChHHHHHH
Q 045634 245 HDLLELSEEVVRHADGNPLALEVL 268 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal~~~ 268 (353)
. ...++..++|.|+....+
T Consensus 207 -~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 -D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -h----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999754433
No 87
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.44 E-value=20 Score=35.87 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=63.5
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCc-ccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRD-KGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. .....+.++..+. ....+.+|++|.+ ..+...+ .....+++.+++.++-.+.+...+-...
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-- 195 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-- 195 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--
Confidence 4566899999986 3556778887777 5556666655444 3333222 2346889999999998877776543221
Q ss_pred CccHHHHHHHHHHHcCCChH-HHHHH
Q 045634 244 SHDLLELSEEVVRHADGNPL-ALEVL 268 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPL-al~~~ 268 (353)
..-..+....|++.++|-+- |+..+
T Consensus 196 i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 196 INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22334566788899998664 44443
No 88
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=70.00 E-value=46 Score=31.81 Aligned_cols=89 Identities=20% Similarity=0.330 Sum_probs=50.3
Q ss_pred cCceeeEeccccchH-------------HHHHHHHh---hcC-C--CCCcEEEEEeCccccccc-c----CccceEEeCC
Q 045634 168 LMKVLIVLDDVHDEF-------------TELKSLAR---RLQ-F--SGRSRIIITSRDKGVLDK-C----GVNNMYEVKG 223 (353)
Q Consensus 168 ~kr~LlVLDdv~~~~-------------~~~~~l~~---~~~-~--~~gs~IivTTR~~~v~~~-~----~~~~~~~l~~ 223 (353)
..+.+|+||+++. . .....+.. .+. . ..+..||.||........ + ..+..++++.
T Consensus 223 ~~p~IlfiDEiD~-l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~ 301 (389)
T PRK03992 223 KAPSIIFIDEIDA-IAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPL 301 (389)
T ss_pred cCCeEEEEechhh-hhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECC
Confidence 3567899999975 2 11122222 222 1 234567777765433221 1 1346789999
Q ss_pred CChhHHHHHHHHhhhccCCC-CccHHHHHHHHHHHcCCC
Q 045634 224 LKYNKALELFCRKAFRETNC-SHDLLELSEEVVRHADGN 261 (353)
Q Consensus 224 L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~c~gl 261 (353)
.+.++-.++|+.+..+.... ...+ ..+++.+.|.
T Consensus 302 P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 302 PDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 99999999999876433221 1223 4455556554
No 89
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=69.30 E-value=23 Score=33.98 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=58.3
Q ss_pred HHHHHHhcCceeeEeccccch--HHH-HHHHHhhcC--CCCCcEEEEEeCccc---------cccccCccceEEeCCCCh
Q 045634 161 RIKKRLQLMKVLIVLDDVHDE--FTE-LKSLARRLQ--FSGRSRIIITSRDKG---------VLDKCGVNNMYEVKGLKY 226 (353)
Q Consensus 161 ~l~~~L~~kr~LlVLDdv~~~--~~~-~~~l~~~~~--~~~gs~IivTTR~~~---------v~~~~~~~~~~~l~~L~~ 226 (353)
.+.+.+++ .-+|+|||+... ... .+.+...+. ...|..+|+||.... +...+.....+++++.+.
T Consensus 192 ~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~ 270 (405)
T TIGR00362 192 EFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDL 270 (405)
T ss_pred HHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCH
Confidence 33444433 347889999751 111 223333332 234566888875421 112222335689999999
Q ss_pred hHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHH
Q 045634 227 NKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLA 264 (353)
Q Consensus 227 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLa 264 (353)
++-..++.+.+-.... .-.++...-|++.+.|.+-.
T Consensus 271 ~~r~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 271 ETRLAILQKKAEEEGL--ELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHH
Confidence 9999999988744321 12356677777887776553
No 90
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=69.24 E-value=6.7 Score=40.69 Aligned_cols=81 Identities=16% Similarity=0.356 Sum_probs=46.2
Q ss_pred ecCCccccccccc--cc--ccceecc-cCCchHHHHHHHHHHhhccCCCCCchHHHHHHHHhcCce-eeEeccccc-hHH
Q 045634 111 QVDPSDVRKQRRS--FG--EAFVHHE-NNFPDKVQKWRDALTEASNLSGYDSTESRIKKRLQLMKV-LIVLDDVHD-EFT 183 (353)
Q Consensus 111 gVgkt~~~~~~~~--f~--~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~l~~~L~~kr~-LlVLDdv~~-~~~ 183 (353)
|||||.+.++... |+ .++...- +.+.++ .....-+...-+.-|++. .-.|-+.++.++| .+.||.+.. .++
T Consensus 531 GVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek-HsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpd 608 (786)
T COG0542 531 GVGKTELAKALAEALFGDEQALIRIDMSEYMEK-HSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPD 608 (786)
T ss_pred cccHHHHHHHHHHHhcCCCccceeechHHHHHH-HHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHH
Confidence 8999988777543 33 3333221 122121 111222222223333333 3678888888988 788899986 577
Q ss_pred HHHHHHhhcC
Q 045634 184 ELKSLARRLQ 193 (353)
Q Consensus 184 ~~~~l~~~~~ 193 (353)
..+.++..+.
T Consensus 609 V~nilLQVlD 618 (786)
T COG0542 609 VFNLLLQVLD 618 (786)
T ss_pred HHHHHHHHhc
Confidence 7787777664
No 91
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=69.15 E-value=26 Score=35.57 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=62.7
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEe-Ccccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITS-RDKGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++=++|+|+++. .....+.|...+. ...++.+|++| ....+...+ .....+++..++.++....+.+.+-... .
T Consensus 132 ~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg--i 209 (598)
T PRK09111 132 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG--V 209 (598)
T ss_pred CcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--C
Confidence 445689999976 2455777777776 55666666655 434443332 2235789999999999888887663322 1
Q ss_pred ccHHHHHHHHHHHcCCChHHHH
Q 045634 245 HDLLELSEEVVRHADGNPLALE 266 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal~ 266 (353)
.-..+....|++.++|-+.-+.
T Consensus 210 ~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 210 EVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred CCCHHHHHHHHHHcCCCHHHHH
Confidence 1234667888899999876543
No 92
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=69.08 E-value=35 Score=31.59 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=60.4
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCc-ccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRD-KGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++-++|+|+++. .....+.++..+. .. .+.+|++|.+ ..+...+ .-...+++.+++.++..+.+...... .
T Consensus 124 ~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~--~-- 198 (314)
T PRK07399 124 PRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE--E-- 198 (314)
T ss_pred CceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc--c--
Confidence 456788899876 3556777777776 44 4455555544 3444433 23468899999999999999876421 1
Q ss_pred ccHHHHHHHHHHHcCCChHHHHH
Q 045634 245 HDLLELSEEVVRHADGNPLALEV 267 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal~~ 267 (353)
........++..++|.|.....
T Consensus 199 -~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 199 -ILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred -cchhHHHHHHHHcCCCHHHHHH
Confidence 1111135788999999965543
No 93
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.83 E-value=11 Score=36.27 Aligned_cols=93 Identities=11% Similarity=0.103 Sum_probs=60.5
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEe-CccccccccC-ccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITS-RDKGVLDKCG-VNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTT-R~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++-++|+|+++. ....++.+...+. ..+.+.+|++| +...+..... ....+++.+++.++..+.+...+-... .
T Consensus 127 ~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~ 204 (397)
T PRK14955 127 RYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--I 204 (397)
T ss_pred CeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--C
Confidence 455789999986 2456777877776 55566666655 4344433221 234688999999988887776652211 1
Q ss_pred ccHHHHHHHHHHHcCCChH
Q 045634 245 HDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPL 263 (353)
.-.++.+..+++.++|.+-
T Consensus 205 ~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 205 SVDADALQLIGRKAQGSMR 223 (397)
T ss_pred CCCHHHHHHHHHHcCCCHH
Confidence 1235677888999999775
No 94
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=67.54 E-value=49 Score=30.78 Aligned_cols=91 Identities=10% Similarity=0.106 Sum_probs=62.2
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcc-cccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDK-GVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++=.+|+|+++. .....+.++..+. ..+++.+|++|.+. .+...+ .-...+.+.+++.++..+.+..... .
T Consensus 107 ~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~-----~ 181 (325)
T PRK06871 107 GNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS-----A 181 (325)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-----c
Confidence 445677899986 3566778888777 67777788777665 344333 2245789999999999988876541 1
Q ss_pred ccHHHHHHHHHHHcCCChHHHH
Q 045634 245 HDLLELSEEVVRHADGNPLALE 266 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal~ 266 (353)
....+...+..++|.|+...
T Consensus 182 --~~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 182 --EISEILTALRINYGRPLLAL 201 (325)
T ss_pred --ChHHHHHHHHHcCCCHHHHH
Confidence 11235567888999996443
No 95
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=67.01 E-value=69 Score=29.94 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=62.1
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++=.+|+|+++. ....-+.++..+. ..+++.+|++|.+.. +..++ .-...+.+.+++.++..+.+.... +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C----
Confidence 3455788899886 3566778888777 677777777776644 44332 223468899999999988776532 1
Q ss_pred CccHHHHHHHHHHHcCCChHHH
Q 045634 244 SHDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal 265 (353)
. ..+.+..++..++|.|...
T Consensus 182 ~--~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 182 M--SQDALLAALRLSAGAPGAA 201 (334)
T ss_pred C--CHHHHHHHHHHcCCCHHHH
Confidence 1 1233677899999999643
No 96
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.99 E-value=23 Score=36.06 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=64.8
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCc-ccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRD-KGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. .....+.|...+. ......+|++|.+ ..+...+ .....+++++++.++....+...+.....
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi- 196 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV- 196 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-
Confidence 4566899999986 3456677777765 4455566665554 3333222 12357899999999998888876643221
Q ss_pred CccHHHHHHHHHHHcCCCh-HHHHHHh
Q 045634 244 SHDLLELSEEVVRHADGNP-LALEVLA 269 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glP-Lal~~~g 269 (353)
.-..+.+..|++.++|.+ .|+..+.
T Consensus 197 -~id~eal~lIA~~s~GdlR~Al~lLe 222 (624)
T PRK14959 197 -DYDPAAVRLIARRAAGSVRDSMSLLG 222 (624)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 123456778888898854 5666664
No 97
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.56 E-value=39 Score=34.44 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=62.1
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCc-ccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRD-KGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
+.-++|+|+++. .....+.++..+. .....++|++|.+ ..+.... .....++++.++.++..+.+.+.+-....
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-- 201 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-- 201 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC--
Confidence 445789999986 3556777777776 4556666666544 3333222 23467899999999998888876633221
Q ss_pred ccHHHHHHHHHHHcCCChHHH
Q 045634 245 HDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal 265 (353)
.-..+....|++.++|.+--+
T Consensus 202 ~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 202 PAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred CCCHHHHHHHHHHcCCCHHHH
Confidence 123456778888888876444
No 98
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.03 E-value=29 Score=35.10 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=56.5
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEe-Ccccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITS-RDKGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++=++|+|+++. .....+.|...+. ......+|++| ....+...+ .....+++.+++.++....+...+-....
T Consensus 119 ~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-- 196 (576)
T PRK14965 119 RYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI-- 196 (576)
T ss_pred CceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC--
Confidence 444788999986 3455677777776 55566666555 434444332 22356788899998888777665422221
Q ss_pred ccHHHHHHHHHHHcCCCh
Q 045634 245 HDLLELSEEVVRHADGNP 262 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glP 262 (353)
.-..+....|++.++|..
T Consensus 197 ~i~~~al~~la~~a~G~l 214 (576)
T PRK14965 197 SISDAALALVARKGDGSM 214 (576)
T ss_pred CCCHHHHHHHHHHcCCCH
Confidence 122455667778887755
No 99
>PRK08181 transposase; Validated
Probab=65.94 E-value=9.4 Score=34.49 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=20.5
Q ss_pred CceeeEeccccch---HHHHHHHHhhcC--CCCCcEEEEEeCcc
Q 045634 169 MKVLIVLDDVHDE---FTELKSLARRLQ--FSGRSRIIITSRDK 207 (353)
Q Consensus 169 kr~LlVLDdv~~~---~~~~~~l~~~~~--~~~gs~IivTTR~~ 207 (353)
+-=||||||+... ....+.+...+. ... ..+||||...
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~ 209 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQP 209 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCC
Confidence 3459999999641 111123333333 233 4688888654
No 100
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.91 E-value=50 Score=31.11 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=57.7
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEe-Ccccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITS-RDKGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++-++++|+++. ....++.+...+. ....+.+|++| ..+.+.... .....++.++++.++....+...+......
T Consensus 108 ~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~- 186 (367)
T PRK14970 108 KYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK- 186 (367)
T ss_pred CcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC-
Confidence 455799999976 2345667766555 44455566555 333333222 223578999999999888888766433221
Q ss_pred ccHHHHHHHHHHHcCCChH
Q 045634 245 HDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPL 263 (353)
-.++.+..+++.++|.+-
T Consensus 187 -i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 187 -FEDDALHIIAQKADGALR 204 (367)
T ss_pred -CCHHHHHHHHHhCCCCHH
Confidence 224667778888888654
No 101
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.85 E-value=26 Score=35.78 Aligned_cols=93 Identities=13% Similarity=0.201 Sum_probs=61.3
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEe-Ccccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITS-RDKGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++=++|+|+++. .....+.|...+. ...++.+|++| ....+...+ .....+++.+++.++....+...+-... .
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg--i 198 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG--I 198 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC--C
Confidence 445789999986 3456777887777 55566666555 444444332 2346799999999999888887663322 1
Q ss_pred ccHHHHHHHHHHHcCCChH
Q 045634 245 HDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPL 263 (353)
.-..+.+..|++.++|-.-
T Consensus 199 ~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 199 TAEPEALNVIAQKADGGMR 217 (614)
T ss_pred CCCHHHHHHHHHHcCCCHH
Confidence 1234567788888888654
No 102
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=65.37 E-value=19 Score=33.14 Aligned_cols=88 Identities=18% Similarity=0.264 Sum_probs=59.0
Q ss_pred eeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcc-cccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCCccH
Q 045634 172 LIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDK-GVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCSHDL 247 (353)
Q Consensus 172 LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~ 247 (353)
.+|||+++. -.+.|..++.... +...++.|+.+..- .+...+ .-...|..++|..++...-|...+-..+ ..-.
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~--v~~d 209 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEG--VDID 209 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhC--CCCC
Confidence 688999987 4678999988887 66666665544332 222211 1224688999999999988888774333 2223
Q ss_pred HHHHHHHHHHcCCC
Q 045634 248 LELSEEVVRHADGN 261 (353)
Q Consensus 248 ~~~~~~i~~~c~gl 261 (353)
.+..+.|++.++|-
T Consensus 210 ~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 210 DDALKLIAKISDGD 223 (346)
T ss_pred HHHHHHHHHHcCCc
Confidence 56677888888773
No 103
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.28 E-value=38 Score=34.33 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=61.5
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCc-ccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRD-KGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++-++|+|+++. .....+.|...+. ....+.+|++|.+ ..+...+ .....+++..++.++....+.+.+......
T Consensus 120 ~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~- 198 (585)
T PRK14950 120 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN- 198 (585)
T ss_pred CeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-
Confidence 456899999986 2455777777766 4556666666543 3333222 123567888999998888887776432211
Q ss_pred ccHHHHHHHHHHHcCCChHHH
Q 045634 245 HDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal 265 (353)
-..+.+..+++.++|.+..+
T Consensus 199 -i~~eal~~La~~s~Gdlr~a 218 (585)
T PRK14950 199 -LEPGALEAIARAATGSMRDA 218 (585)
T ss_pred -CCHHHHHHHHHHcCCCHHHH
Confidence 22466788899999988644
No 104
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.00 E-value=30 Score=34.09 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=61.7
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCc-ccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRD-KGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. .....+.+...+. ......+|++|.+ ..+...+ .....+++.+++.++-...+...+.....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi- 194 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI- 194 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-
Confidence 3566899999986 2445666776666 4444554545443 2232222 12357899999999988888877643221
Q ss_pred CccHHHHHHHHHHHcCC-ChHHHHHHhh
Q 045634 244 SHDLLELSEEVVRHADG-NPLALEVLAN 270 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~g-lPLal~~~g~ 270 (353)
.-.++....|++.++| ++.++..+-.
T Consensus 195 -~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 195 -EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred -CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1224566778887754 5666665544
No 105
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=64.46 E-value=26 Score=25.10 Aligned_cols=60 Identities=10% Similarity=0.126 Sum_probs=36.4
Q ss_pred eeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccC
Q 045634 16 YKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKD 80 (353)
Q Consensus 16 ~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 80 (353)
++|+|...+.+. ...+..++..|+..|+++-+|.. +.++...+..+-+.--..++++.++
T Consensus 2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~----~~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLR----NEKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHHHHcCCCEEEEECcc
Confidence 677666544433 34678899999999999988762 3455555555533222234444433
No 106
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=63.63 E-value=41 Score=32.86 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=59.3
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeC-cccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSR-DKGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR-~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. .....+.+...+. ...+..+|++|. ...+...+ .....+++.+++.++....+...+-...
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-- 197 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-- 197 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence 4566789999986 2345566766666 445666666653 33333322 2245789999999998888777653222
Q ss_pred CccHHHHHHHHHHHcCCChH
Q 045634 244 SHDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPL 263 (353)
..-..+.+..+++.++|.+-
T Consensus 198 ~~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 198 IETSREALLPIARAAQGSLR 217 (451)
T ss_pred CCCCHHHHHHHHHHcCCCHH
Confidence 11234567788888888653
No 107
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=63.39 E-value=36 Score=36.01 Aligned_cols=94 Identities=12% Similarity=0.106 Sum_probs=60.5
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeC-cccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSR-DKGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR-~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++=++|||+++. .....+.|+..+. ....+.+|++|. ...+...+ .....|++..++.++..+.+.+..-...
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-- 196 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-- 196 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC--
Confidence 4455788999986 3566777877777 555666665554 33444333 2346889999999988888776542222
Q ss_pred CccHHHHHHHHHHHcCCChH
Q 045634 244 SHDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPL 263 (353)
..-..+....|++.++|.+.
T Consensus 197 v~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 197 VPVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCCCHHHHHHHHHHcCCCHH
Confidence 11233456778888888773
No 108
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.97 E-value=33 Score=34.27 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=60.6
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcc-cccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDK-GVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. .....+.++..+. ....+.+|++|.+. .+...+ .....+++++++.++..+.+.+.+-...
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-- 195 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-- 195 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--
Confidence 4566899999986 2445677777776 55566666665443 333221 1235789999999998887776553222
Q ss_pred CccHHHHHHHHHHHcCCChH
Q 045634 244 SHDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPL 263 (353)
..-..+....|++.++|.+-
T Consensus 196 i~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 196 IPFDATALQLLARAAAGSMR 215 (527)
T ss_pred CCCCHHHHHHHHHHcCCCHH
Confidence 11234566788899999775
No 109
>CHL00176 ftsH cell division protein; Validated
Probab=62.48 E-value=74 Score=32.67 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=53.3
Q ss_pred HHHHHhcCceeeEeccccchH----------------HHHHHHHhhcC---CCCCcEEEEEeCcccccc-----ccCccc
Q 045634 162 IKKRLQLMKVLIVLDDVHDEF----------------TELKSLARRLQ---FSGRSRIIITSRDKGVLD-----KCGVNN 217 (353)
Q Consensus 162 l~~~L~~kr~LlVLDdv~~~~----------------~~~~~l~~~~~---~~~gs~IivTTR~~~v~~-----~~~~~~ 217 (353)
+.......+.+|++|+++. . ..+..+...+. ...+-.||.||....... ....+.
T Consensus 268 F~~A~~~~P~ILfIDEID~-l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~ 346 (638)
T CHL00176 268 FKKAKENSPCIVFIDEIDA-VGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDR 346 (638)
T ss_pred HHHHhcCCCcEEEEecchh-hhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCce
Confidence 3344455788999999964 2 11233333332 123445666665543221 112346
Q ss_pred eEEeCCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCC
Q 045634 218 MYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADG 260 (353)
Q Consensus 218 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~g 260 (353)
.+.++..+.++-.++|+.++-.... ........+++.+.|
T Consensus 347 ~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G 386 (638)
T CHL00176 347 QITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPG 386 (638)
T ss_pred EEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCC
Confidence 7889999999888888887633111 112334566667666
No 110
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=62.17 E-value=22 Score=37.77 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=22.2
Q ss_pred HHHHHHhcCc-eeeEeccccc-hHHHHHHHHhhcC
Q 045634 161 RIKKRLQLMK-VLIVLDDVHD-EFTELKSLARRLQ 193 (353)
Q Consensus 161 ~l~~~L~~kr-~LlVLDdv~~-~~~~~~~l~~~~~ 193 (353)
.+.+.++.++ .+++||++.. ....++.+...+.
T Consensus 658 ~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~ 692 (852)
T TIGR03346 658 QLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLD 692 (852)
T ss_pred HHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHh
Confidence 4555554444 4899999987 5667777776654
No 111
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=61.97 E-value=23 Score=31.20 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=44.3
Q ss_pred CchHHHHHHHHhcCceeeEeccccc--hHHHHHHHHhhcC--CCCCcEEEEEeCccccccccCccceE
Q 045634 156 DSTESRIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ--FSGRSRIIITSRDKGVLDKCGVNNMY 219 (353)
Q Consensus 156 ~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~--~~~gs~IivTTR~~~v~~~~~~~~~~ 219 (353)
...+..|-+.+--++=|.|||..++ +.+.++.+..... ..+|+.+|+.|-.+.++.....+.++
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3334567777777889999999998 4555555544444 45677788888888888776544443
No 112
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=61.48 E-value=27 Score=26.79 Aligned_cols=12 Identities=8% Similarity=0.470 Sum_probs=10.5
Q ss_pred CceeeEeccccc
Q 045634 169 MKVLIVLDDVHD 180 (353)
Q Consensus 169 kr~LlVLDdv~~ 180 (353)
++.+|++||++.
T Consensus 58 ~~~vl~iDe~d~ 69 (132)
T PF00004_consen 58 KPCVLFIDEIDK 69 (132)
T ss_dssp TSEEEEEETGGG
T ss_pred cceeeeeccchh
Confidence 479999999986
No 113
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=59.47 E-value=30 Score=34.38 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=53.4
Q ss_pred cCceeeEeccccchHHHHHHH------------HhhcC----CCCCcEEEEEeCccccccccCc----cceEEeCCCCh-
Q 045634 168 LMKVLIVLDDVHDEFTELKSL------------ARRLQ----FSGRSRIIITSRDKGVLDKCGV----NNMYEVKGLKY- 226 (353)
Q Consensus 168 ~kr~LlVLDdv~~~~~~~~~l------------~~~~~----~~~gs~IivTTR~~~v~~~~~~----~~~~~l~~L~~- 226 (353)
..--.||+||+.. .-+|-.+ .-.+. .+..--|+-||....+++.|+. ...+.|+.++.
T Consensus 597 S~lsiivvDdiEr-LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 597 SPLSIIVVDDIER-LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred CcceEEEEcchhh-hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 3456899999987 5444332 22222 3333345558888888888863 45789999987
Q ss_pred hHHHHHHHHhh-hccCCCCccHHHHHHHHHHHc
Q 045634 227 NKALELFCRKA-FRETNCSHDLLELSEEVVRHA 258 (353)
Q Consensus 227 ~ea~~Lf~~~a-~~~~~~~~~~~~~~~~i~~~c 258 (353)
++..+.++..- |. ..+.+.++.+...+|
T Consensus 676 ~~~~~vl~~~n~fs----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 676 EQLLEVLEELNIFS----DDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHHHccCCC----cchhHHHHHHHhccc
Confidence 67777776543 22 334455666666655
No 114
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=58.99 E-value=34 Score=24.59 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=37.9
Q ss_pred eeEEEeccccc--cccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccC
Q 045634 16 YKVFLSFRGED--TRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKD 80 (353)
Q Consensus 16 ~dvFiSy~~~D--~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 80 (353)
++|+|-.-+++ .....+..+...|+..|+++-+|.. +.++...+..+-+.--..++++.++
T Consensus 2 ~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~----~~~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 2 IDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDR----ERKIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCC----CcCHhHHHHHHHhCCCCEEEEECCC
Confidence 57766543330 1245788899999999999988762 3455555555543333456666654
No 115
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=58.75 E-value=67 Score=29.51 Aligned_cols=95 Identities=14% Similarity=0.161 Sum_probs=60.9
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCc-ccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRD-KGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++=++|+|+++. .....+.+...+. ..+++.+|++|.+ ..+...+ .....+++.+++.++..+.+.... .+
T Consensus 90 ~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~-----~~ 164 (299)
T PRK07132 90 QKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKN-----KE 164 (299)
T ss_pred CceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcC-----CC
Confidence 566778888876 2455677877777 6677777765544 4444332 235688999999999887776531 11
Q ss_pred ccHHHHHHHHHHHcCCChHHHHHHhhc
Q 045634 245 HDLLELSEEVVRHADGNPLALEVLANN 271 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal~~~g~~ 271 (353)
.+.+..++...+|.--|+..+..-
T Consensus 165 ---~~~a~~~a~~~~~~~~a~~~~~~~ 188 (299)
T PRK07132 165 ---KEYNWFYAYIFSNFEQAEKYINKE 188 (299)
T ss_pred ---hhHHHHHHHHcCCHHHHHHHHhcC
Confidence 234566666777744566665544
No 116
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=58.74 E-value=26 Score=25.49 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeecc
Q 045634 29 NGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSK 79 (353)
Q Consensus 29 ~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~ 79 (353)
..++..+...|.++|+++.+|. .+.++...+..+-..=--.++++.+
T Consensus 15 ~~~a~~l~~~L~~~gi~v~~d~----~~~~~~k~~~~a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 15 IEYAQELANKLRKAGIRVELDD----SDKSLGKQIKYADKLGIPFIIIIGE 61 (94)
T ss_dssp HHHHHHHHHHHHHTTSEEEEES----SSSTHHHHHHHHHHTTESEEEEEEH
T ss_pred HHHHHHHHHHHHHCCCEEEEEC----CCCchhHHHHHHhhcCCeEEEEECc
Confidence 4588999999999999999987 3456666666664433333444443
No 117
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=57.95 E-value=82 Score=31.15 Aligned_cols=98 Identities=16% Similarity=0.124 Sum_probs=52.3
Q ss_pred hcCceeeEeccccchH----------------HHHHHHHhhcC---CCCCcEEEEEeCcccccc-----ccCccceEEeC
Q 045634 167 QLMKVLIVLDDVHDEF----------------TELKSLARRLQ---FSGRSRIIITSRDKGVLD-----KCGVNNMYEVK 222 (353)
Q Consensus 167 ~~kr~LlVLDdv~~~~----------------~~~~~l~~~~~---~~~gs~IivTTR~~~v~~-----~~~~~~~~~l~ 222 (353)
...+.+|++|+++. . .....+...+. ...+-.||.||....... ....+..+.++
T Consensus 145 ~~~p~Il~iDEid~-l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~ 223 (495)
T TIGR01241 145 KNAPCIIFIDEIDA-VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVD 223 (495)
T ss_pred hcCCCEEEEechhh-hhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcC
Confidence 34578999999964 1 11222322222 122344555665443221 11245678899
Q ss_pred CCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCC-hHHHHHH
Q 045634 223 GLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGN-PLALEVL 268 (353)
Q Consensus 223 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 268 (353)
..+.++-.++|..+.-...... ......+++.+.|. +-.|..+
T Consensus 224 ~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 224 LPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHH
Confidence 8998888888887663322111 11234677777663 4444433
No 118
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.56 E-value=50 Score=33.72 Aligned_cols=93 Identities=11% Similarity=0.104 Sum_probs=58.9
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEe-Ccccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITS-RDKGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++-++|+|+++. .....+.|...+. ....+.+|++| +...+...+ .....+++.+++.++....+...+-... .
T Consensus 127 ~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg--i 204 (620)
T PRK14954 127 RYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG--I 204 (620)
T ss_pred CCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--C
Confidence 455789999986 2455777877776 44555555544 434443332 2346899999999998877776553221 1
Q ss_pred ccHHHHHHHHHHHcCCChH
Q 045634 245 HDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPL 263 (353)
.-..+.+..+++.++|..-
T Consensus 205 ~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 205 QIDADALQLIARKAQGSMR 223 (620)
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 1234567788899998544
No 119
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=57.06 E-value=28 Score=23.04 Aligned_cols=47 Identities=9% Similarity=-0.033 Sum_probs=38.5
Q ss_pred cCCHhHHHHHhhhhccCCC-CCHHHHHHHHhcC-----chHHHHhhCCCcEee
Q 045634 294 ELNLEEKKTFLDIACFFTG-EDIDFVRRIRDDP-----SSLDTFVDKSLITIF 340 (353)
Q Consensus 294 ~L~~~~k~~fl~la~fp~~-~~~~~l~~~w~~~-----~~l~~L~~~sLl~~~ 340 (353)
.|++....++.++.-.|++ .....+...+.-. ..++.|.+++||...
T Consensus 2 glt~~q~~vL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 2 GLTPSQFRVLMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERE 54 (62)
T ss_dssp TSTHHHHHHHHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4667778888899988876 5788888888765 999999999999876
No 120
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=57.04 E-value=68 Score=33.37 Aligned_cols=99 Identities=11% Similarity=0.102 Sum_probs=62.0
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEE-EeCcccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIII-TSRDKGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~Iiv-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. ....++.++..+. ......+|+ ||....+.... .....+++.+++.++....+...+-...
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-- 194 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-- 194 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--
Confidence 4556889999976 2456777877766 444555554 44444443322 2235889999999998888877553222
Q ss_pred CccHHHHHHHHHHHcCCChH-HHHHH
Q 045634 244 SHDLLELSEEVVRHADGNPL-ALEVL 268 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPL-al~~~ 268 (353)
..-..+.+..+++.++|-+- |+..+
T Consensus 195 I~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 195 ISYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11224557788899988664 44433
No 121
>PRK12377 putative replication protein; Provisional
Probab=56.75 E-value=17 Score=32.44 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=41.8
Q ss_pred EEeEEe--ecCCccccccccccc-ccce-ecccCCchHHHHHHHHHHhhccCCCCCchHHHHHHHHhcCceeeEeccccc
Q 045634 105 VIPVFY--QVDPSDVRKQRRSFG-EAFV-HHENNFPDKVQKWRDALTEASNLSGYDSTESRIKKRLQLMKVLIVLDDVHD 180 (353)
Q Consensus 105 vipI~g--gVgkt~~~~~~~~f~-~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~l~~~L~~kr~LlVLDdv~~ 180 (353)
-+-++| |+|||++....+... ..-. ...-..++.+..++..... +. ....+.+.+ .+-=||||||+..
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~-----~~--~~~~~l~~l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDN-----GQ--SGEKFLQEL-CKVDLLVLDEIGI 174 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhc-----cc--hHHHHHHHh-cCCCEEEEcCCCC
Confidence 455666 999997665443221 1000 0100122444444443311 10 112233333 3566899999943
Q ss_pred h-HHHH--HHHHhhcC--CCCCcEEEEEeC
Q 045634 181 E-FTEL--KSLARRLQ--FSGRSRIIITSR 205 (353)
Q Consensus 181 ~-~~~~--~~l~~~~~--~~~gs~IivTTR 205 (353)
+ ...| +.+...+. ....-.+||||-
T Consensus 175 ~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 175 QRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1 2222 33433333 333445677774
No 122
>PF13730 HTH_36: Helix-turn-helix domain
Probab=56.66 E-value=31 Score=22.27 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=31.2
Q ss_pred cCCHhHHHHHhhhhccCCCC-----CHHHHHHHHhcC-----chHHHHhhCCCc
Q 045634 294 ELNLEEKKTFLDIACFFTGE-----DIDFVRRIRDDP-----SSLDTFVDKSLI 337 (353)
Q Consensus 294 ~L~~~~k~~fl~la~fp~~~-----~~~~l~~~w~~~-----~~l~~L~~~sLl 337 (353)
.|++.++.++.++.-+..+. ..+.+....... .++++|+++|+|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 57888888888888764221 345555555443 899999999986
No 123
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.07 E-value=75 Score=31.44 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=59.3
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEe-Ccccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITS-RDKGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. .....+.+...+. ..+...+|++| +...+.... .....+++.+++.++-...+...+-...
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-- 195 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-- 195 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC--
Confidence 3556899999986 2445667776666 44455555554 333333221 1235788999999998888777653222
Q ss_pred CccHHHHHHHHHHHcCCChHHH
Q 045634 244 SHDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal 265 (353)
..-..+.+..+++.++|.+-.+
T Consensus 196 i~id~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 196 IEYEEKALDLLAQASEGGMRDA 217 (486)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 1123456677888898876544
No 124
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=54.66 E-value=14 Score=39.34 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=21.8
Q ss_pred HHHHHHhcC-ceeeEeccccc-hHHHHHHHHhhcC
Q 045634 161 RIKKRLQLM-KVLIVLDDVHD-EFTELKSLARRLQ 193 (353)
Q Consensus 161 ~l~~~L~~k-r~LlVLDdv~~-~~~~~~~l~~~~~ 193 (353)
.|.+.++.+ .-+|+||++.. +...++.+...+.
T Consensus 659 ~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld 693 (852)
T TIGR03345 659 VLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFD 693 (852)
T ss_pred hHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhh
Confidence 455555544 56999999986 4566666665554
No 125
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=54.51 E-value=19 Score=29.71 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=28.4
Q ss_pred HHHHhc-CceeeEeccccc----hHHHHHHHHhhcC-CCCCcEEEEEeCccc
Q 045634 163 KKRLQL-MKVLIVLDDVHD----EFTELKSLARRLQ-FSGRSRIIITSRDKG 208 (353)
Q Consensus 163 ~~~L~~-kr~LlVLDdv~~----~~~~~~~l~~~~~-~~~gs~IivTTR~~~ 208 (353)
++.+.. +-=|+|||.+-. ..-..+.+...+. ...+..+|+|.|+..
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 333433 344999999864 1222344444444 556778999999865
No 126
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.59 E-value=86 Score=32.07 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=59.4
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcc-cccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDK-GVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++-++|+|+++. .....+.|+..+. ......+|++|.+. .+...+ .....+++..++.++....+.+.+-.....
T Consensus 121 ~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~- 199 (620)
T PRK14948 121 RWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE- 199 (620)
T ss_pred CceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-
Confidence 455789999986 2456777877776 44455555555443 333222 123567888999988887777665332211
Q ss_pred ccHHHHHHHHHHHcCCChHHH
Q 045634 245 HDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal 265 (353)
-..+.+..|++.++|.+..+
T Consensus 200 -is~~al~~La~~s~G~lr~A 219 (620)
T PRK14948 200 -IEPEALTLVAQRSQGGLRDA 219 (620)
T ss_pred -CCHHHHHHHHHHcCCCHHHH
Confidence 12355778889999877544
No 127
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=53.40 E-value=50 Score=33.51 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=61.6
Q ss_pred ceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeC-cccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCCc
Q 045634 170 KVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSR-DKGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCSH 245 (353)
Q Consensus 170 r~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR-~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 245 (353)
+=++|+|+++. ....++.|...+. ......+|++|. -..+.... .....+++.+++.++....+...+-.... .
T Consensus 120 ~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~ 197 (605)
T PRK05896 120 YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI--K 197 (605)
T ss_pred cEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--C
Confidence 33699999976 3456777777766 445555655553 33333222 22457899999999998888876633221 1
Q ss_pred cHHHHHHHHHHHcCCCh-HHHHHHhh
Q 045634 246 DLLELSEEVVRHADGNP-LALEVLAN 270 (353)
Q Consensus 246 ~~~~~~~~i~~~c~glP-Lal~~~g~ 270 (353)
-..+.+..+++.++|.+ .|+..+-.
T Consensus 198 Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 198 IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22456778899999865 45444443
No 128
>PRK10865 protein disaggregation chaperone; Provisional
Probab=52.79 E-value=31 Score=36.72 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=21.3
Q ss_pred HHHHHHhcCc-eeeEeccccc-hHHHHHHHHhhcC
Q 045634 161 RIKKRLQLMK-VLIVLDDVHD-EFTELKSLARRLQ 193 (353)
Q Consensus 161 ~l~~~L~~kr-~LlVLDdv~~-~~~~~~~l~~~~~ 193 (353)
.+.+.++.++ -+|+||++.. ....++.+...+.
T Consensus 661 ~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 661 YLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred HHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 4555554443 5899999985 3666777766553
No 129
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=52.39 E-value=24 Score=36.79 Aligned_cols=34 Identities=9% Similarity=0.195 Sum_probs=22.7
Q ss_pred HHHHHHHhcCce-eeEeccccc-hHHHHHHHHhhcC
Q 045634 160 SRIKKRLQLMKV-LIVLDDVHD-EFTELKSLARRLQ 193 (353)
Q Consensus 160 ~~l~~~L~~kr~-LlVLDdv~~-~~~~~~~l~~~~~ 193 (353)
..+.+.++.+++ +++||+++. ..+.++.+...+.
T Consensus 543 ~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 543 GLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred hHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 345666655544 999999987 4666666666554
No 130
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=51.58 E-value=64 Score=23.88 Aligned_cols=58 Identities=9% Similarity=0.073 Sum_probs=42.3
Q ss_pred hhhccCCHhHHHHHhhhhc-------cCCCCCHHHHHHHHhcC-----chHHHHhhCCCcEeeC--CeEEec
Q 045634 290 ISYDELNLEEKKTFLDIAC-------FFTGEDIDFVRRIRDDP-----SSLDTFVDKSLITIFY--NELQMH 347 (353)
Q Consensus 290 ~sy~~L~~~~k~~fl~la~-------fp~~~~~~~l~~~w~~~-----~~l~~L~~~sLl~~~~--~~~~mH 347 (353)
+.+..++.....+++.++- .........+..+.... ..++.|.++++|.... |.+.|.
T Consensus 18 l~~~~l~~r~~~vLl~L~~~~~G~~~~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r~~~~~~~~~n 89 (95)
T TIGR01610 18 LPGADLSGREFRVLLAIIRLTYGWNKKQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQGMMGIVGVN 89 (95)
T ss_pred HHhCCCCHHHHHHHHHHHHHHhCccccCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeecCCceeecC
Confidence 5677888888888888873 12233455666665554 8899999999999874 667775
No 131
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=51.56 E-value=99 Score=31.23 Aligned_cols=96 Identities=9% Similarity=0.109 Sum_probs=62.3
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCc-ccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRD-KGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. ....++.+...+. ..+...+|++|.+ ..+...+ .....++..+++.++-.+.+...+.....
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi- 196 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI- 196 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 4556788999986 3456777877776 5566666666544 3333222 12356899999999988888776643221
Q ss_pred CccHHHHHHHHHHHcCCChHHH
Q 045634 244 SHDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal 265 (353)
.-.++.+..|++.++|.+-.+
T Consensus 197 -~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 197 -KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred -CCCHHHHHHHHHHcCCCHHHH
Confidence 123466777888888877533
No 132
>PRK06526 transposase; Provisional
Probab=51.53 E-value=20 Score=32.10 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=20.1
Q ss_pred CceeeEeccccch---HHHHHHHHhhcC--CCCCcEEEEEeCcc
Q 045634 169 MKVLIVLDDVHDE---FTELKSLARRLQ--FSGRSRIIITSRDK 207 (353)
Q Consensus 169 kr~LlVLDdv~~~---~~~~~~l~~~~~--~~~gs~IivTTR~~ 207 (353)
+.-|||+||+... ....+.+...+. ...++ +|+||...
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 3458999999741 111122333322 23344 88888654
No 133
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=51.10 E-value=75 Score=29.56 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=46.6
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHH
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCR 235 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~ 235 (353)
.+=++|+|+++. .....+.++..+. ...++.+|++|.+.. +...+ .-...+++.+++.++..+.+..
T Consensus 110 ~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 110 NKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 344688899876 3556677887777 667777777776543 33332 2346789999999998887765
No 134
>PRK09183 transposase/IS protein; Provisional
Probab=50.22 E-value=33 Score=30.71 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=20.5
Q ss_pred CceeeEeccccc-h--HHHHHHHHhhcC--CCCCcEEEEEeCc
Q 045634 169 MKVLIVLDDVHD-E--FTELKSLARRLQ--FSGRSRIIITSRD 206 (353)
Q Consensus 169 kr~LlVLDdv~~-~--~~~~~~l~~~~~--~~~gs~IivTTR~ 206 (353)
+.-++|+||+.- . ....+.+...+. ...++ +|+||..
T Consensus 164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 456999999974 1 222223433332 33454 7888854
No 135
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=49.56 E-value=97 Score=29.77 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=42.6
Q ss_pred hcCceeeEeccccchH----------------HHHHHHHhhcC---CCCCcEEEEEeCccccccc-c----CccceEEeC
Q 045634 167 QLMKVLIVLDDVHDEF----------------TELKSLARRLQ---FSGRSRIIITSRDKGVLDK-C----GVNNMYEVK 222 (353)
Q Consensus 167 ~~kr~LlVLDdv~~~~----------------~~~~~l~~~~~---~~~gs~IivTTR~~~v~~~-~----~~~~~~~l~ 222 (353)
...+.+|++|+++. . ..+..+...+. ...+..||.||........ + ..+..++++
T Consensus 236 ~~~P~ILfIDEID~-i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~ 314 (398)
T PTZ00454 236 ENAPSIIFIDEVDS-IATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 314 (398)
T ss_pred hcCCeEEEEECHhh-hccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeC
Confidence 45678999999864 1 11222333222 1235578888876554322 1 235678899
Q ss_pred CCChhHHHHHHHHhh
Q 045634 223 GLKYNKALELFCRKA 237 (353)
Q Consensus 223 ~L~~~ea~~Lf~~~a 237 (353)
..+.++-..+|....
T Consensus 315 ~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 315 LPDRRQKRLIFQTIT 329 (398)
T ss_pred CcCHHHHHHHHHHHH
Confidence 889888888887665
No 136
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=49.41 E-value=60 Score=25.10 Aligned_cols=62 Identities=13% Similarity=0.041 Sum_probs=39.3
Q ss_pred CceeEEEeccc--cccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCc
Q 045634 14 SKYKVFLSFRG--EDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDY 81 (353)
Q Consensus 14 ~~~dvFiSy~~--~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~ 81 (353)
..+||||-.-+ ++ ....+..++..|+++|+++-+|.. .++...+..+-+.--..++++.++-
T Consensus 25 ap~~v~Ii~~~~~~~-~~~~a~~la~~LR~~gi~v~~d~~-----~sl~kqlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 25 APIKVAVLPLVKRDE-LVEIAKEISEELRELGFSVKYDDS-----GSIGRRYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred CCcEEEEEecCCcHH-HHHHHHHHHHHHHHCCCEEEEeCC-----CCHHHHHHHhHhcCCCEEEEECcCc
Confidence 46788777655 32 234778899999999999998762 3554555555333333455555443
No 137
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.31 E-value=1.1e+02 Score=30.98 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=60.3
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEe-Ccccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITS-RDKGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. .....+.|+..+. ......+|++| ....+...+ .-...+++..++.++..+.+...+-.....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 3455889999985 3566777877777 55565555554 444444332 224679999999999888887765332211
Q ss_pred CccHHHHHHHHHHHcCCChH
Q 045634 244 SHDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPL 263 (353)
-..+....|++.++|-+-
T Consensus 197 --i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 197 --VDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred --CCHHHHHHHHHHcCCCHH
Confidence 123456778888888764
No 138
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=47.28 E-value=27 Score=33.96 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=14.6
Q ss_pred HHHHH--hcCceeeEeccccc
Q 045634 162 IKKRL--QLMKVLIVLDDVHD 180 (353)
Q Consensus 162 l~~~L--~~kr~LlVLDdv~~ 180 (353)
+-+++ +++++|+++||+-.
T Consensus 243 iAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 243 IAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHcCCCEEEEEcChHH
Confidence 44444 57899999999975
No 139
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=47.16 E-value=1e+02 Score=25.04 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=53.4
Q ss_pred CceeeEeccc------cchHHHHHHHHhhcC-CCCCcEEEEEeC-ccc----cccccC-ccceEEeCCCChhHHHHHHHH
Q 045634 169 MKVLIVLDDV------HDEFTELKSLARRLQ-FSGRSRIIITSR-DKG----VLDKCG-VNNMYEVKGLKYNKALELFCR 235 (353)
Q Consensus 169 kr~LlVLDdv------~~~~~~~~~l~~~~~-~~~gs~IivTTR-~~~----v~~~~~-~~~~~~l~~L~~~ea~~Lf~~ 235 (353)
.+-++|+.+. .. ...++.+...+. ..+++.+|+.+. ... ....+. ....++..++...+.......
T Consensus 57 ~~klvii~~~~~l~~~~~-~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~ 135 (172)
T PF06144_consen 57 DKKLVIIKNAPFLKDKLK-KKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKE 135 (172)
T ss_dssp SEEEEEEE-----TT-S--TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHH
T ss_pred CCeEEEEecCcccccccc-HHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHH
Confidence 4556666665 23 567888888877 677888888877 211 111222 234577788888888888777
Q ss_pred hhhccCCCCccHHHHHHHHHHHcCCChHHHH
Q 045634 236 KAFRETNCSHDLLELSEEVVRHADGNPLALE 266 (353)
Q Consensus 236 ~a~~~~~~~~~~~~~~~~i~~~c~glPLal~ 266 (353)
.+-... ..-..+.+..+++..++.+.++.
T Consensus 136 ~~~~~g--~~i~~~a~~~L~~~~~~d~~~l~ 164 (172)
T PF06144_consen 136 RAKKNG--LKIDPDAAQYLIERVGNDLSLLQ 164 (172)
T ss_dssp HHHHTT---EE-HHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcC--CCCCHHHHHHHHHHhChHHHHHH
Confidence 764322 22345678888888888887764
No 140
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=46.61 E-value=19 Score=35.00 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=14.5
Q ss_pred HHHHH--hcCceeeEeccccc
Q 045634 162 IKKRL--QLMKVLIVLDDVHD 180 (353)
Q Consensus 162 l~~~L--~~kr~LlVLDdv~~ 180 (353)
+-+++ +++++|+++||+-.
T Consensus 239 iAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 239 IAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHCCCcEEEEEeCcHH
Confidence 44444 47899999999965
No 141
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=46.58 E-value=22 Score=34.02 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=35.6
Q ss_pred ecCCccccccc------cccc-ccceecccCCchHHHHHHHHH-HhhccCCCCCchH-----------HHHHHH-HhcCc
Q 045634 111 QVDPSDVRKQR------RSFG-EAFVHHENNFPDKVQKWRDAL-TEASNLSGYDSTE-----------SRIKKR-LQLMK 170 (353)
Q Consensus 111 gVgkt~~~~~~------~~f~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~~-----------~~l~~~-L~~kr 170 (353)
|+|||.+.+.. .+|+ ..|+......++.+..+...+ ..+.- +.++... +.-+.. -.+++
T Consensus 179 GvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~-st~d~~~~~~~~~a~~~ie~Ae~~~e~G~d 257 (416)
T PRK09376 179 KAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVA-STFDEPAERHVQVAEMVIEKAKRLVEHGKD 257 (416)
T ss_pred CCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEE-ECCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 89999554331 2566 456666666554433333332 22111 1122111 111111 25799
Q ss_pred eeeEeccccc
Q 045634 171 VLIVLDDVHD 180 (353)
Q Consensus 171 ~LlVLDdv~~ 180 (353)
++|++|++..
T Consensus 258 VlL~iDsItR 267 (416)
T PRK09376 258 VVILLDSITR 267 (416)
T ss_pred EEEEEEChHH
Confidence 9999999976
No 142
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=46.41 E-value=1.5e+02 Score=30.01 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=59.0
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEe-Ccccccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITS-RDKGVLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. ....++.|...+. ......+|++| ....+...+ .....++..+++.++..+.+...+-.....
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~ 197 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE 197 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 3555789999986 2456777877766 44455555544 333333322 123568889999999888887766332211
Q ss_pred CccHHHHHHHHHHHcCCChHH
Q 045634 244 SHDLLELSEEVVRHADGNPLA 264 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLa 264 (353)
-..+.+..|++.++|-+..
T Consensus 198 --i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 198 --YEDEALRLIARAAEGGMRD 216 (559)
T ss_pred --CCHHHHHHHHHHcCCCHHH
Confidence 1245667788888887653
No 143
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=45.52 E-value=27 Score=31.19 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=33.7
Q ss_pred EeEEe--ecCCccccccccccc--ccceecccCCchHHHHHHHHHHhhccCCCCCchHHHHHHHHhcCceeeEeccccc
Q 045634 106 IPVFY--QVDPSDVRKQRRSFG--EAFVHHENNFPDKVQKWRDALTEASNLSGYDSTESRIKKRLQLMKVLIVLDDVHD 180 (353)
Q Consensus 106 ipI~g--gVgkt~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~l~~~L~~kr~LlVLDdv~~ 180 (353)
+-++| |+|||++.-..+.-. .-+...--..++.++.++.+... ......|.+.++ +-=||||||+--
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~-------~~~~~~l~~~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE-------GRLEEKLLRELK-KVDLLIIDDIGY 178 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc-------CchHHHHHHHhh-cCCEEEEecccC
Confidence 33445 999996654333221 11111111234667777776554 112234444343 233789999965
No 144
>PF08132 AdoMetDC_leader: S-adenosyl-l-methionine decarboxylase leader peptide; InterPro: IPR012511 This family consists of the S-adenosyl-l-methionine decarboxylase (AdoMetDC) leader peptides. AdoMetDC is a key regulatory enzyme in the biosynthesis of polyamines. All expressed plant AdoMetDC mRNA 5, leader sequences contain a highly conserved pair of overlapping upstream ORFs (uORFs) that overlap by one base. Sequences of the small uORFs are highly conserved between monocot, dicot and gymnosperm AdoMetDC mRNA species, suggesting a translational regulatory mechanism [].
Probab=45.27 E-value=14 Score=23.56 Aligned_cols=24 Identities=42% Similarity=0.394 Sum_probs=18.6
Q ss_pred CCCCCCCCCCceeEEEeccccccc
Q 045634 5 SSSSSLTGHSKYKVFLSFRGEDTR 28 (353)
Q Consensus 5 ~~~~~~~~~~~~dvFiSy~~~D~~ 28 (353)
||||++.....|..=+.|+.+|.|
T Consensus 10 ssssss~~s~~yeaPLgYsIEDvR 33 (54)
T PF08132_consen 10 SSSSSSSNSLFYEAPLGYSIEDVR 33 (54)
T ss_pred ccccccccceEEeccccceeeecc
Confidence 445555566789999999999976
No 145
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=43.88 E-value=48 Score=30.00 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=16.1
Q ss_pred hcCceeeEeccccchHHHHHHHH
Q 045634 167 QLMKVLIVLDDVHDEFTELKSLA 189 (353)
Q Consensus 167 ~~kr~LlVLDdv~~~~~~~~~l~ 189 (353)
+++.+|+++||+-.-...+.++.
T Consensus 159 ~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 159 NGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred CCCCEEEEEcChHHHHHHHHHHH
Confidence 46899999999976234445443
No 146
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=43.74 E-value=1.1e+02 Score=27.87 Aligned_cols=69 Identities=7% Similarity=0.003 Sum_probs=42.4
Q ss_pred ceeeEeccccc----------hHHHHHHHHhhcC-CCCCcEEEEEeCccccccccC--------ccceEEeCCCChhHHH
Q 045634 170 KVLIVLDDVHD----------EFTELKSLARRLQ-FSGRSRIIITSRDKGVLDKCG--------VNNMYEVKGLKYNKAL 230 (353)
Q Consensus 170 r~LlVLDdv~~----------~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~~~--------~~~~~~l~~L~~~ea~ 230 (353)
.-+|+||++.. ....++.+...+. ...+.+||.++.....-.... ....+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 46888999963 0233455555555 445566777664332211110 1357899999999999
Q ss_pred HHHHHhhh
Q 045634 231 ELFCRKAF 238 (353)
Q Consensus 231 ~Lf~~~a~ 238 (353)
+++...+-
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99887763
No 147
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.05 E-value=1.5e+02 Score=29.21 Aligned_cols=183 Identities=13% Similarity=0.098 Sum_probs=87.2
Q ss_pred Hhhhhhhhhcc-ccCCcEEEeEEe--ecCCcc----cccccccccccceecc---cCCchHHHHHHHHHHhh---ccCCC
Q 045634 88 LNELVNILDCK-KMNGKIVIPVFY--QVDPSD----VRKQRRSFGEAFVHHE---NNFPDKVQKWRDALTEA---SNLSG 154 (353)
Q Consensus 88 ~~El~~~~~~~-~~~~~~vipI~g--gVgkt~----~~~~~~~f~~~~~~~~---~~~~~~~~~~~~~l~~~---~~~~g 154 (353)
++.+.+++..+ +.....-+-|-| |.|||. +....+.+.+.+..+. ....+....+..+.+.+ ....|
T Consensus 159 ~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~ 238 (529)
T KOG2227|consen 159 MDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPG 238 (529)
T ss_pred HHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCc
Confidence 55556666554 444455667777 899983 2233344444433221 11112233444444444 22222
Q ss_pred CCch-HHHHHHHHhcC--ceeeEeccccchHHH--HHHHHh--hcCCCCCcEEEEEe---------Cccccccc-c-Ccc
Q 045634 155 YDST-ESRIKKRLQLM--KVLIVLDDVHDEFTE--LKSLAR--RLQFSGRSRIIITS---------RDKGVLDK-C-GVN 216 (353)
Q Consensus 155 ~~~~-~~~l~~~L~~k--r~LlVLDdv~~~~~~--~~~l~~--~~~~~~gs~IivTT---------R~~~v~~~-~-~~~ 216 (353)
...+ ...+.+..... -+|+|||.++. ... -..+.. .++.-+++++|+.- |.-.-+.. . ...
T Consensus 239 ~~~~~~~~~~~h~~q~k~~~llVlDEmD~-L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P 317 (529)
T KOG2227|consen 239 TGMQHLEKFEKHTKQSKFMLLLVLDEMDH-LITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKP 317 (529)
T ss_pred hhHHHHHHHHHHHhcccceEEEEechhhH-HhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCC
Confidence 2211 13444444433 58999999986 211 011111 12234566665532 11110111 0 123
Q ss_pred ceEEeCCCChhHHHHHHHHhhhccCC---CCccHHHHHHHHHHHcCCChHHHHHHhhc
Q 045634 217 NMYEVKGLKYNKALELFCRKAFRETN---CSHDLLELSEEVVRHADGNPLALEVLANN 271 (353)
Q Consensus 217 ~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~~i~~~c~glPLal~~~g~~ 271 (353)
.....++-+.++-.++|..+.-.... .+...+-.|++++..-|.+=-|+.+.-+.
T Consensus 318 ~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 318 KLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred ceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 46777888999999999887632221 11133344455555555566666655544
No 148
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=42.97 E-value=54 Score=29.72 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=15.1
Q ss_pred HHHHHH--h-cCceeeEeccccc
Q 045634 161 RIKKRL--Q-LMKVLIVLDDVHD 180 (353)
Q Consensus 161 ~l~~~L--~-~kr~LlVLDdv~~ 180 (353)
.+-+++ + ++++|+++||+-.
T Consensus 152 ~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 152 TMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHhcCCeEEEEEeChhH
Confidence 345555 3 7899999999976
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=41.16 E-value=81 Score=32.96 Aligned_cols=21 Identities=5% Similarity=0.067 Sum_probs=17.7
Q ss_pred ceEEeCCCChhHHHHHHHHhh
Q 045634 217 NMYEVKGLKYNKALELFCRKA 237 (353)
Q Consensus 217 ~~~~l~~L~~~ea~~Lf~~~a 237 (353)
..++++.++.++..+++....
T Consensus 338 ~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 338 QKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred ceEEeCCCCHHHHHHHHHHHH
Confidence 368999999999999998654
No 150
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=40.97 E-value=38 Score=27.81 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=34.9
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcccc-cccc-CccceEEeCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKGV-LDKC-GVNNMYEVKGL 224 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~v-~~~~-~~~~~~~l~~L 224 (353)
++=.+|+||++. .....+.|+..+. ...++.+|++|.+..- .... .-...+.+.+|
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 455788999987 4667788888777 7788999999887663 3222 12235555554
No 151
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=40.70 E-value=26 Score=27.70 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=21.8
Q ss_pred cccchHHHHHHHHHhCCcceeecccc
Q 045634 27 TRNGFTSHLAAALHRKQIQFFIDDEE 52 (353)
Q Consensus 27 ~~~~f~~~l~~~L~~~g~~~~~d~~~ 52 (353)
.....+..|+..|+.+|++++.|+.+
T Consensus 41 ~~~~~a~~l~~~L~~~gi~v~~D~r~ 66 (128)
T cd02426 41 ELRDLCQGLKNELREAGLSVWPGYLE 66 (128)
T ss_pred HHHHHHHHHHHHHHHcCCEEEeccCc
Confidence 34568899999999999999998844
No 152
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=40.42 E-value=20 Score=34.72 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=14.7
Q ss_pred HHHHHHh---cCceeeEeccccc
Q 045634 161 RIKKRLQ---LMKVLIVLDDVHD 180 (353)
Q Consensus 161 ~l~~~L~---~kr~LlVLDdv~~ 180 (353)
.+-++++ ++++|+++||+-.
T Consensus 220 tiAEyfrd~g~~~VLli~DdlTr 242 (436)
T PRK02118 220 AVAEKFALEGKKKVLVLLTDMTN 242 (436)
T ss_pred HHHHHHHhcCCCCEEEeccCchH
Confidence 4455553 3789999999976
No 153
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.29 E-value=3.9e+02 Score=27.50 Aligned_cols=70 Identities=10% Similarity=0.144 Sum_probs=36.7
Q ss_pred cCceeeEeccccc----hHHHHHHHHh-hcC-CCCCcEEEEEeCccc--------ccc-------cc---CccceEEeCC
Q 045634 168 LMKVLIVLDDVHD----EFTELKSLAR-RLQ-FSGRSRIIITSRDKG--------VLD-------KC---GVNNMYEVKG 223 (353)
Q Consensus 168 ~kr~LlVLDdv~~----~~~~~~~l~~-~~~-~~~gs~IivTTR~~~--------v~~-------~~---~~~~~~~l~~ 223 (353)
+++.+|+||++.+ ....+..+.. ... .+.-.-|++||-+.. ... .+ .....+...+
T Consensus 194 ~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnP 273 (637)
T TIGR00602 194 TDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNP 273 (637)
T ss_pred CceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCC
Confidence 4678999999954 1223444444 222 232334555552211 000 11 0123578999
Q ss_pred CChhHHHHHHHHhh
Q 045634 224 LKYNKALELFCRKA 237 (353)
Q Consensus 224 L~~~ea~~Lf~~~a 237 (353)
++...-.+.+.+.+
T Consensus 274 ia~t~l~K~L~rIl 287 (637)
T TIGR00602 274 IAPTIMKKFLNRIV 287 (637)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988666665554
No 154
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=39.80 E-value=51 Score=22.77 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHhcC-----chHHHHhhCCCcEeeCCeEEechh
Q 045634 312 GEDIDFVRRIRDDP-----SSLDTFVDKSLITIFYNELQMHDL 349 (353)
Q Consensus 312 ~~~~~~l~~~w~~~-----~~l~~L~~~sLl~~~~~~~~mHdl 349 (353)
+.+.+.+..+.... ..++.|.+.++|...++++.++|.
T Consensus 28 ~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~~~~~~i~I~d~ 70 (76)
T PF13545_consen 28 PLTQEEIADMLGVSRETVSRILKRLKDEGIIEVKRGKIIILDP 70 (76)
T ss_dssp ESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESSH
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEcCCEEEECCH
Confidence 34677777777665 999999999999999889999885
No 155
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=39.76 E-value=25 Score=31.80 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=15.1
Q ss_pred HHHHHHh---cCceeeEeccccc
Q 045634 161 RIKKRLQ---LMKVLIVLDDVHD 180 (353)
Q Consensus 161 ~l~~~L~---~kr~LlVLDdv~~ 180 (353)
.+-++++ ++++|+++||+-.
T Consensus 155 aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 155 TTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHhccCCeEEEEEcChhH
Confidence 4555553 6899999999976
No 156
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=39.41 E-value=1.4e+02 Score=22.54 Aligned_cols=79 Identities=15% Similarity=-0.010 Sum_probs=50.3
Q ss_pred chHHHHHHHHHhCCccee-eccccccCCCCccHHHHHHhhhcCeEEeeeccCcccchhhHhhhhhhhhccccCCcEEEeE
Q 045634 30 GFTSHLAAALHRKQIQFF-IDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVNILDCKKMNGKIVIPV 108 (353)
Q Consensus 30 ~f~~~l~~~L~~~g~~~~-~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~~~~~~~~~~~vipI 108 (353)
--...+...|+++|+.+- +|. ... .+++.+.+++.+--++.+|-.+.....-..++.+. .+.....+.-|
T Consensus 15 lGl~~la~~l~~~G~~v~~~d~-~~~-----~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~---~k~~~p~~~iv 85 (121)
T PF02310_consen 15 LGLLYLAAYLRKAGHEVDILDA-NVP-----PEELVEALRAERPDVVGISVSMTPNLPEAKRLARA---IKERNPNIPIV 85 (121)
T ss_dssp HHHHHHHHHHHHTTBEEEEEES-SB------HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHH---HHTTCTTSEEE
T ss_pred HHHHHHHHHHHHCCCeEEEECC-CCC-----HHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHH---HHhcCCCCEEE
Confidence 346678899999999884 443 221 17788888888888888877554433333344443 33334456677
Q ss_pred EeecCCccc
Q 045634 109 FYQVDPSDV 117 (353)
Q Consensus 109 ~ggVgkt~~ 117 (353)
+||...|..
T Consensus 86 ~GG~~~t~~ 94 (121)
T PF02310_consen 86 VGGPHATAD 94 (121)
T ss_dssp EEESSSGHH
T ss_pred EECCchhcC
Confidence 888877733
No 157
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=39.33 E-value=40 Score=30.06 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=12.3
Q ss_pred hcCceeeEeccccc
Q 045634 167 QLMKVLIVLDDVHD 180 (353)
Q Consensus 167 ~~kr~LlVLDdv~~ 180 (353)
.++++++++|++..
T Consensus 101 ~G~~vll~iDei~r 114 (249)
T cd01128 101 HGKDVVILLDSITR 114 (249)
T ss_pred CCCCEEEEEECHHH
Confidence 47899999999976
No 158
>CHL00095 clpC Clp protease ATP binding subunit
Probab=39.23 E-value=56 Score=34.66 Aligned_cols=34 Identities=9% Similarity=0.247 Sum_probs=23.7
Q ss_pred HHHHHHHhcCce-eeEeccccc-hHHHHHHHHhhcC
Q 045634 160 SRIKKRLQLMKV-LIVLDDVHD-EFTELKSLARRLQ 193 (353)
Q Consensus 160 ~~l~~~L~~kr~-LlVLDdv~~-~~~~~~~l~~~~~ 193 (353)
..|.+.++.+++ +++||+++. ....++.+...+.
T Consensus 601 ~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 601 GQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred chHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 356677776654 888999987 4666777766554
No 159
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=39.00 E-value=66 Score=28.77 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=19.4
Q ss_pred cccchHHHHHHHHHhCCcceeecc
Q 045634 27 TRNGFTSHLAAALHRKQIQFFIDD 50 (353)
Q Consensus 27 ~~~~f~~~l~~~L~~~g~~~~~d~ 50 (353)
+.++-+.||.+.|...|+.+....
T Consensus 18 ivdtNa~~la~~L~~~G~~v~~~~ 41 (255)
T COG1058 18 IVDTNAAFLADELTELGVDLARIT 41 (255)
T ss_pred eecchHHHHHHHHHhcCceEEEEE
Confidence 345678899999999999987653
No 160
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=38.77 E-value=65 Score=27.46 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=38.5
Q ss_pred HHHHHHhcCceeeEeccccc--hHHHHHHHHhhcC--CCCCcEEEEEeCccccccccCccceEEeCCCC
Q 045634 161 RIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ--FSGRSRIIITSRDKGVLDKCGVNNMYEVKGLK 225 (353)
Q Consensus 161 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~--~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~ 225 (353)
.+-..+..+.-+++||..-. +....+.+...+. ...|..||++|.+...... ++++.++...
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~~~ 202 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGPFA 202 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecCcc
Confidence 45555666788999999865 3333344443333 2346778999988765443 5667776543
No 161
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=38.40 E-value=78 Score=29.17 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=19.1
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ 193 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~ 193 (353)
+|-|+|+|+++. ....++.|.+.+.
T Consensus 178 ~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 178 QRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred CCceEEechhhhcCHhHHHHHhhhhc
Confidence 799999999997 4566666666554
No 162
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=38.30 E-value=23 Score=34.61 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=15.5
Q ss_pred HHHHHH---hcCceeeEeccccc
Q 045634 161 RIKKRL---QLMKVLIVLDDVHD 180 (353)
Q Consensus 161 ~l~~~L---~~kr~LlVLDdv~~ 180 (353)
.+-+++ +++++|+++|++-.
T Consensus 227 tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 227 TMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHhcCCceEEEecchHH
Confidence 455666 56899999999965
No 163
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=37.91 E-value=82 Score=26.81 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=34.6
Q ss_pred ccccchHHHHHHHHHhCC--cceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccc
Q 045634 26 DTRNGFTSHLAAALHRKQ--IQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASS 84 (353)
Q Consensus 26 D~~~~f~~~l~~~L~~~g--~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s 84 (353)
|..|+|+-.|++.|+..| +.|+..+ + +.. ..++..+--.+++||.-...
T Consensus 8 DNyDSFtyNLv~yl~~lg~~v~V~rnd-~------~~~---~~~~~~~pd~iviSPGPG~P 58 (191)
T COG0512 8 DNYDSFTYNLVQYLRELGAEVTVVRND-D------ISL---ELIEALKPDAIVISPGPGTP 58 (191)
T ss_pred ECccchHHHHHHHHHHcCCceEEEECC-c------cCH---HHHhhcCCCEEEEcCCCCCh
Confidence 567899999999999987 4555543 1 111 25667777789999987543
No 164
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=37.68 E-value=26 Score=34.22 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=15.7
Q ss_pred HHHHHHh---cCceeeEeccccc
Q 045634 161 RIKKRLQ---LMKVLIVLDDVHD 180 (353)
Q Consensus 161 ~l~~~L~---~kr~LlVLDdv~~ 180 (353)
.+-++++ ++++||++||+-.
T Consensus 227 tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 227 TAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHccCCcEEEEEcChhH
Confidence 4666665 5789999999975
No 165
>PRK07952 DNA replication protein DnaC; Validated
Probab=37.56 E-value=34 Score=30.37 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=23.4
Q ss_pred HHHHHHhcCceeeEeccccch-HHHHHH--HHhhcC--CCCCcEEEEEeC
Q 045634 161 RIKKRLQLMKVLIVLDDVHDE-FTELKS--LARRLQ--FSGRSRIIITSR 205 (353)
Q Consensus 161 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~--l~~~~~--~~~gs~IivTTR 205 (353)
.+.+.+. +.=|||+||+..+ ...|+. +...+. ......+||||-
T Consensus 155 ~~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 155 QLLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred HHHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 3444455 4558889999651 334442 222222 333445777774
No 166
>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]
Probab=36.66 E-value=99 Score=26.45 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=45.8
Q ss_pred eEEEeccccccccchHHHHHHHHHh-CCc-ceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcc
Q 045634 17 KVFLSFRGEDTRNGFTSHLAAALHR-KQI-QFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYA 82 (353)
Q Consensus 17 dvFiSy~~~D~~~~f~~~l~~~L~~-~g~-~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~ 82 (353)
-|||-|.++- .+.....+|.+ ... .+|.|. -+..|..+.+.+.+.|.+++-+|++..|+-.
T Consensus 84 kvFvv~ghd~----iArael~allrd~~l~~vi~d~-~~~~g~~ile~lek~i~~v~FAi~latPDDk 146 (233)
T COG4271 84 KVFVVSGHDA----IARAELEALLRDWKLEPVILDG-LFSEGQTILESLEKYIAEVKFAIVLATPDDK 146 (233)
T ss_pred eEEEEeccHH----HHHHHHHHHhhccccceEEecC-cccccHHHHHHHHHHhhhceEEEEEecCccc
Confidence 9999986542 45555556653 333 455565 6678889999999999999999999999864
No 167
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=36.64 E-value=26 Score=34.17 Aligned_cols=20 Identities=15% Similarity=0.444 Sum_probs=15.6
Q ss_pred HHHHHHh---cCceeeEeccccc
Q 045634 161 RIKKRLQ---LMKVLIVLDDVHD 180 (353)
Q Consensus 161 ~l~~~L~---~kr~LlVLDdv~~ 180 (353)
.+-++++ ++++|+++||+-.
T Consensus 221 tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 221 TMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHhcCCceEEEecChHH
Confidence 5566665 4899999999975
No 168
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=36.59 E-value=2.7e+02 Score=25.03 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=56.0
Q ss_pred cCceeeEeccccc--hHHHHHHHHhhcC-CCCCcEEEEEeCccc-------cccccCccceEEeCCCChhHHHHHHHHhh
Q 045634 168 LMKVLIVLDDVHD--EFTELKSLARRLQ-FSGRSRIIITSRDKG-------VLDKCGVNNMYEVKGLKYNKALELFCRKA 237 (353)
Q Consensus 168 ~kr~LlVLDdv~~--~~~~~~~l~~~~~-~~~gs~IivTTR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 237 (353)
+++-++|+++... ....++.+...+. ..++..+|+++-... ..........+....++..+-...+...+
T Consensus 45 ~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 124 (302)
T TIGR01128 45 SERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARL 124 (302)
T ss_pred cCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHH
Confidence 3566788888865 1345777777666 555666666654211 11111134567778888888777776665
Q ss_pred hccCCCCccHHHHHHHHHHHcCCChHHH
Q 045634 238 FRETNCSHDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 238 ~~~~~~~~~~~~~~~~i~~~c~glPLal 265 (353)
-.... .-..+.+..+++.++|-...+
T Consensus 125 ~~~g~--~i~~~a~~~l~~~~~~d~~~l 150 (302)
T TIGR01128 125 KKLGL--RIDPDAVQLLAELVEGNLLAI 150 (302)
T ss_pred HHcCC--CCCHHHHHHHHHHhCcHHHHH
Confidence 33221 122455667777777755544
No 169
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=36.26 E-value=75 Score=27.11 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=29.4
Q ss_pred HHHHHhc-CceeeEeccccc----hHHHHHHHHhhcC-CCCCcEEEEEeCccc
Q 045634 162 IKKRLQL-MKVLIVLDDVHD----EFTELKSLARRLQ-FSGRSRIIITSRDKG 208 (353)
Q Consensus 162 l~~~L~~-kr~LlVLDdv~~----~~~~~~~l~~~~~-~~~gs~IivTTR~~~ 208 (353)
.++.+.. +-=|+|||.+-. ..-..+.+...+. ..++..||+|-|+..
T Consensus 107 a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 107 AKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3444433 445999999964 1222345555555 566779999999864
No 170
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=35.98 E-value=2e+02 Score=28.07 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=29.6
Q ss_pred HHHHHHhcCceeeEeccccc--hHHHHHHHHhhcCCCCCcEEEEEeCcccccc
Q 045634 161 RIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQFSGRSRIIITSRDKGVLD 211 (353)
Q Consensus 161 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~gs~IivTTR~~~v~~ 211 (353)
.+-+.-.+..=.||||.--+ +.+.++.+...+..-.|+ ||+.|.+..+..
T Consensus 714 alaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~Gg-Vi~VsHDeRLi~ 765 (807)
T KOG0066|consen 714 ALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGG-VIMVSHDERLIV 765 (807)
T ss_pred HHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCc-EEEEecccceee
Confidence 44444456677889997765 356667777766623444 444455555443
No 171
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.66 E-value=2.3e+02 Score=22.62 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccchhhHhhhhhhhhcc
Q 045634 32 TSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVNILDCK 98 (353)
Q Consensus 32 ~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~~~~~ 98 (353)
..-+...|+.+|+.|. ++....+ .+++.+++.+-+.-++-+|.-.....--+.++...+...
T Consensus 18 k~iv~~~l~~~GfeVi----~LG~~v~-~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~ 79 (134)
T TIGR01501 18 NKILDHAFTNAGFNVV----NLGVLSP-QEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEA 79 (134)
T ss_pred HHHHHHHHHHCCCEEE----ECCCCCC-HHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHC
Confidence 3456778899999985 2322222 367778877778888888876655444455666555443
No 172
>PRK06936 type III secretion system ATPase; Provisional
Probab=35.64 E-value=37 Score=33.01 Aligned_cols=19 Identities=32% Similarity=0.481 Sum_probs=14.5
Q ss_pred HHHHH--hcCceeeEeccccc
Q 045634 162 IKKRL--QLMKVLIVLDDVHD 180 (353)
Q Consensus 162 l~~~L--~~kr~LlVLDdv~~ 180 (353)
+-+++ +++++|+++||+-.
T Consensus 243 iAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 243 IAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHcCCCEEEeccchhH
Confidence 44444 47899999999975
No 173
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=35.42 E-value=92 Score=29.49 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=27.7
Q ss_pred hHHHHHHHHhcCceeeEeccccc----hHHHHHHHHhhcCCCCCcEEEEEeCccc
Q 045634 158 TESRIKKRLQLMKVLIVLDDVHD----EFTELKSLARRLQFSGRSRIIITSRDKG 208 (353)
Q Consensus 158 ~~~~l~~~L~~kr~LlVLDdv~~----~~~~~~~l~~~~~~~~gs~IivTTR~~~ 208 (353)
.-..+-+.+.++..||.||...= +...+..+...+ +..|. ++|+|.|..
T Consensus 116 ~l~~va~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l-~~~gv-vlVaTSN~~ 168 (362)
T PF03969_consen 116 PLPQVADELAKESRLLCFDEFQVTDIADAMILKRLFEAL-FKRGV-VLVATSNRP 168 (362)
T ss_pred cHHHHHHHHHhcCCEEEEeeeeccchhHHHHHHHHHHHH-HHCCC-EEEecCCCC
Confidence 33556677777888999987642 133344443332 44555 555665543
No 174
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=34.78 E-value=51 Score=27.62 Aligned_cols=46 Identities=26% Similarity=0.371 Sum_probs=28.2
Q ss_pred HHHHhcC-ceeeEeccccc----hHHHHHHHHhhcC-CCCCcEEEEEeCccc
Q 045634 163 KKRLQLM-KVLIVLDDVHD----EFTELKSLARRLQ-FSGRSRIIITSRDKG 208 (353)
Q Consensus 163 ~~~L~~k-r~LlVLDdv~~----~~~~~~~l~~~~~-~~~gs~IivTTR~~~ 208 (353)
++.+... -=|+|||.+-. ..-..+.+...+. ..++..||+|-|+..
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 3444333 44999999864 0122234444444 566779999999864
No 175
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=34.65 E-value=69 Score=27.29 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=31.1
Q ss_pred HHHHHHhcCce-eeEeccccc----hHHHHHHHHhhcC-CCCCcEEEEEeCccc
Q 045634 161 RIKKRLQLMKV-LIVLDDVHD----EFTELKSLARRLQ-FSGRSRIIITSRDKG 208 (353)
Q Consensus 161 ~l~~~L~~kr~-LlVLDdv~~----~~~~~~~l~~~~~-~~~gs~IivTTR~~~ 208 (353)
..++.+.+.+| |+|||.+.- +.-.++.+...+. -.....||+|-|.-.
T Consensus 113 ~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap 166 (198)
T COG2109 113 HAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAP 166 (198)
T ss_pred HHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCC
Confidence 34445555444 899999853 1334566666665 566789999998743
No 176
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.44 E-value=67 Score=30.43 Aligned_cols=44 Identities=25% Similarity=0.211 Sum_probs=28.4
Q ss_pred hcCceeeEeccccc--hHHHHHHHHhhcCCCCCcEEEEEeCcccccc
Q 045634 167 QLMKVLIVLDDVHD--EFTELKSLARRLQFSGRSRIIITSRDKGVLD 211 (353)
Q Consensus 167 ~~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~gs~IivTTR~~~v~~ 211 (353)
.++.-+++|||+-. +....+.+...+. ..|..+++||.+.....
T Consensus 300 ~~~~pilLLDD~~seLD~~~r~~l~~~l~-~~~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 300 GGEYPILLLDDVASELDDQRRRLLAELLQ-SLGVQVFVTAISLDHLK 345 (365)
T ss_pred cCCCCEEEEcCchhccCHHHHHHHHHHHh-hcCCEEEEEecChhhcc
Confidence 34678999999986 2333444555543 12568999998765443
No 177
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=34.33 E-value=1.1e+02 Score=22.05 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=30.3
Q ss_pred cchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccC
Q 045634 29 NGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKD 80 (353)
Q Consensus 29 ~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 80 (353)
...+..++..|+.+|+++.+|.. +.++...+..+-+.---.++++.++
T Consensus 17 ~~~a~~la~~Lr~~g~~v~~d~~----~~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 17 QELAEKLYAELQAAGVDVLLDDR----NERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEEECC----CCCcccchhHHHhcCCCEEEEECCc
Confidence 34788899999999999999863 2344444555433333344555544
No 178
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=34.32 E-value=61 Score=34.00 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=21.7
Q ss_pred HHHHHHhcCc-eeeEeccccc-hHHHHHHHHhhcC
Q 045634 161 RIKKRLQLMK-VLIVLDDVHD-EFTELKSLARRLQ 193 (353)
Q Consensus 161 ~l~~~L~~kr-~LlVLDdv~~-~~~~~~~l~~~~~ 193 (353)
.+.+.++.++ -+++||+++. ..+.++.+...+.
T Consensus 548 ~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 548 LLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred hHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 4555555544 5899999997 4556666665543
No 179
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=34.14 E-value=39 Score=31.82 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=14.4
Q ss_pred HHHHHH--hcCceeeEeccccc
Q 045634 161 RIKKRL--QLMKVLIVLDDVHD 180 (353)
Q Consensus 161 ~l~~~L--~~kr~LlVLDdv~~ 180 (353)
.+-+++ .++++|+++|++..
T Consensus 244 tiAEYfrd~G~dVll~~Ds~tR 265 (369)
T cd01134 244 TIAEYFRDMGYNVALMADSTSR 265 (369)
T ss_pred HHHHHHHHcCCCEEEEEcChhH
Confidence 344444 46899999999965
No 180
>PRK08939 primosomal protein DnaI; Reviewed
Probab=34.10 E-value=45 Score=30.72 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=21.5
Q ss_pred CceeeEeccccch-HHHHH--HHHhhc-C--CCCCcEEEEEeC
Q 045634 169 MKVLIVLDDVHDE-FTELK--SLARRL-Q--FSGRSRIIITSR 205 (353)
Q Consensus 169 kr~LlVLDdv~~~-~~~~~--~l~~~~-~--~~~gs~IivTTR 205 (353)
+-=||||||+.-+ ...|. .+...+ . ...+..+|+||-
T Consensus 217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 4558999999642 34453 243332 2 234556788874
No 181
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.80 E-value=1.7e+02 Score=26.80 Aligned_cols=97 Identities=14% Similarity=0.235 Sum_probs=57.7
Q ss_pred ce-eeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-cccccC-ccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 170 KV-LIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKCG-VNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 170 r~-LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
.| ++|+-.+++ -.+.-..++.... ....+|+|+.--+-. +...+. -.-.++++..+.+|-...+++..-+..-.-
T Consensus 127 ~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l 206 (351)
T KOG2035|consen 127 PFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL 206 (351)
T ss_pred ceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC
Confidence 44 455555554 2344455666555 677788877422211 111111 123578899999999999988774443222
Q ss_pred ccHHHHHHHHHHHcCCC-hHHHHHH
Q 045634 245 HDLLELSEEVVRHADGN-PLALEVL 268 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~gl-PLal~~~ 268 (353)
-.+++++|+++++|. --||-++
T Consensus 207 --p~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 207 --PKELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred --cHHHHHHHHHHhcccHHHHHHHH
Confidence 268899999998875 3444433
No 182
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=33.73 E-value=62 Score=27.23 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=26.4
Q ss_pred CceeeEeccccc----hHHHHHHHHhhcC-CCCCcEEEEEeCccc
Q 045634 169 MKVLIVLDDVHD----EFTELKSLARRLQ-FSGRSRIIITSRDKG 208 (353)
Q Consensus 169 kr~LlVLDdv~~----~~~~~~~l~~~~~-~~~gs~IivTTR~~~ 208 (353)
+-=|+|||.+-. ..-..+.+...+. ..++..||+|-|+..
T Consensus 115 ~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p 159 (178)
T PRK07414 115 RYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMP 159 (178)
T ss_pred CCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 445999999864 1222344555555 566779999999854
No 183
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=33.39 E-value=60 Score=32.12 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=31.7
Q ss_pred HHHHHHhcCceeeEeccccc--hHHHHHHHHhhcC--CCCCcEEEEEeCccccccc
Q 045634 161 RIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ--FSGRSRIIITSRDKGVLDK 212 (353)
Q Consensus 161 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~--~~~gs~IivTTR~~~v~~~ 212 (353)
.|-+.+-+..+|+|||.-.. |.+--..+...+. ...|+.+|+.|..+.++..
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~ 537 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh
Confidence 57778889999999998765 1111112222222 4556777777766666554
No 184
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=32.90 E-value=41 Score=32.47 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=14.4
Q ss_pred HHHHH--hcCceeeEeccccc
Q 045634 162 IKKRL--QLMKVLIVLDDVHD 180 (353)
Q Consensus 162 l~~~L--~~kr~LlVLDdv~~ 180 (353)
+-+++ +++++|+++||+-.
T Consensus 218 iAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 218 IAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHCCCCEEEEEeChHH
Confidence 44444 47899999999965
No 185
>PRK14700 recombination factor protein RarA; Provisional
Probab=32.87 E-value=1.6e+02 Score=27.03 Aligned_cols=67 Identities=12% Similarity=0.050 Sum_probs=42.5
Q ss_pred CCCcEEEE--EeCccccccc---cCccceEEeCCCChhHHHHHHHHhhhccC----CCCccHHHHHHHHHHHcCCC
Q 045634 195 SGRSRIII--TSRDKGVLDK---CGVNNMYEVKGLKYNKALELFCRKAFRET----NCSHDLLELSEEVVRHADGN 261 (353)
Q Consensus 195 ~~gs~Iiv--TTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~----~~~~~~~~~~~~i~~~c~gl 261 (353)
..|.-++| ||.++...-. ..-..++++++|+.++-.+++.+..-... ....-.++....|++.|+|-
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GD 80 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGD 80 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCH
Confidence 45655555 6766653211 12346899999999999999987653211 11223456777888888884
No 186
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=32.56 E-value=44 Score=32.62 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=14.5
Q ss_pred HHHHH--hcCceeeEeccccc
Q 045634 162 IKKRL--QLMKVLIVLDDVHD 180 (353)
Q Consensus 162 l~~~L--~~kr~LlVLDdv~~ 180 (353)
+-+++ +++++|+++||+-.
T Consensus 249 iAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 249 IAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHCCCCEEEEecchhH
Confidence 44444 56899999999975
No 187
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=32.04 E-value=20 Score=31.25 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=12.4
Q ss_pred hcCceeeEeccccc
Q 045634 167 QLMKVLIVLDDVHD 180 (353)
Q Consensus 167 ~~kr~LlVLDdv~~ 180 (353)
+++++|+++||+-.
T Consensus 103 ~G~dVlli~Dsltr 116 (215)
T PF00006_consen 103 QGKDVLLIIDSLTR 116 (215)
T ss_dssp TTSEEEEEEETHHH
T ss_pred cCCceeehhhhhHH
Confidence 57999999999965
No 188
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=31.86 E-value=23 Score=39.12 Aligned_cols=41 Identities=5% Similarity=0.215 Sum_probs=29.1
Q ss_pred cCcccchhhHhhhhhhhhccccCCcEEEeEEe--ecCCcccccc
Q 045634 79 KDYASSKWCLNELVNILDCKKMNGKIVIPVFY--QVDPSDVRKQ 120 (353)
Q Consensus 79 ~~~~~s~~~~~El~~~~~~~~~~~~~vipI~g--gVgkt~~~~~ 120 (353)
+++++-.-.++|+..++... ..+.+++.|+| |+|||++.+.
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~-~~~~~vvgI~G~gGiGKTTLA~~ 226 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLE-SEEVRMVGIWGSSGIGKTTIARA 226 (1153)
T ss_pred ccccchHHHHHHHHHHHccc-cCceEEEEEEcCCCCchHHHHHH
Confidence 45566666777877766433 34577999999 9999976554
No 189
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=31.75 E-value=75 Score=31.54 Aligned_cols=13 Identities=38% Similarity=0.455 Sum_probs=11.8
Q ss_pred cCceeeEeccccc
Q 045634 168 LMKVLIVLDDVHD 180 (353)
Q Consensus 168 ~kr~LlVLDdv~~ 180 (353)
++++|+|+||+-.
T Consensus 253 G~~VLli~DdlTr 265 (502)
T PRK09281 253 GKDALIVYDDLSK 265 (502)
T ss_pred CCCEEEEecCchH
Confidence 6899999999976
No 190
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=30.48 E-value=1.2e+02 Score=18.36 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=19.2
Q ss_pred chHHHHhhCCCcEeeCCeEEec
Q 045634 326 SSLDTFVDKSLITIFYNELQMH 347 (353)
Q Consensus 326 ~~l~~L~~~sLl~~~~~~~~mH 347 (353)
..++.|.+.+++....+.|.+|
T Consensus 27 ~~l~~L~~~g~l~~~~~~~~i~ 48 (48)
T smart00419 27 RTLKRLEKEGLISREGGRIVIL 48 (48)
T ss_pred HHHHHHHHCCCEEEeCCEEEEC
Confidence 8899999999999877778776
No 191
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=30.24 E-value=1.2e+02 Score=28.33 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=51.0
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
.|+. |+|++.. +...-+.+...+. ...++.+|++|.+.. +...+ .....+.+.+++.++..+.+.... ..
T Consensus 114 ~kV~-iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~ 187 (325)
T PRK08699 114 LRVI-LIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VA 187 (325)
T ss_pred ceEE-EEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CC
Confidence 3444 4577775 3455566666555 445666777777654 33332 123578899999999988776532 11
Q ss_pred ccHHHHHHHHHHHcCCChHHH
Q 045634 245 HDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal 265 (353)
. .. ..+..++|-|+..
T Consensus 188 ~-~~----~~l~~~~g~p~~~ 203 (325)
T PRK08699 188 E-PE----ERLAFHSGAPLFD 203 (325)
T ss_pred c-HH----HHHHHhCCChhhh
Confidence 1 11 1235688988654
No 192
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=30.14 E-value=2.5e+02 Score=21.81 Aligned_cols=76 Identities=13% Similarity=0.245 Sum_probs=37.4
Q ss_pred CCCceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhc---CeEEeeeccCcccchhhH
Q 045634 12 GHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETS---DISVIILSKDYASSKWCL 88 (353)
Q Consensus 12 ~~~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s---~~~i~v~S~~~~~s~~~~ 88 (353)
....+|++|.|++.+... ...++ ....++.++.+ .|.++.+.+..+++.. .-.|+++..+.-. -+.
T Consensus 7 ~~~~~~~~l~~~~~~~~~-~~~~~---~~~~~~~~~~Q-----~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~--l~~ 75 (122)
T PF09837_consen 7 QADGADVVLAYTPDGDHA-AFRQL---WLPSGFSFFPQ-----QGGDLGERMANAFQQAARGYEPVVLIGSDCPD--LTP 75 (122)
T ss_dssp -TSSSEEEEEE----TTH-HHHHH---HH-TTSEEEE-------SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT----H
T ss_pred cCCCcCEEEEEcCCccHH-HHhcc---ccCCCCEEeec-----CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCC--CCH
Confidence 456789999999887543 33222 33445555443 5788888888888776 2355555554322 233
Q ss_pred hhhhhhhhcc
Q 045634 89 NELVNILDCK 98 (353)
Q Consensus 89 ~El~~~~~~~ 98 (353)
+.+..+....
T Consensus 76 ~~l~~A~~~L 85 (122)
T PF09837_consen 76 DDLEQAFEAL 85 (122)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 3444444444
No 193
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=29.74 E-value=90 Score=30.98 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=12.1
Q ss_pred hcCceeeEeccccc
Q 045634 167 QLMKVLIVLDDVHD 180 (353)
Q Consensus 167 ~~kr~LlVLDdv~~ 180 (353)
+++++|||+||+-.
T Consensus 251 ~G~~VLlv~Ddltr 264 (501)
T TIGR00962 251 NGKHALIIYDDLSK 264 (501)
T ss_pred cCCCEEEEecchHH
Confidence 36899999999976
No 194
>COG0400 Predicted esterase [General function prediction only]
Probab=29.36 E-value=1.8e+02 Score=25.07 Aligned_cols=58 Identities=24% Similarity=0.233 Sum_probs=45.2
Q ss_pred CCCCCceeEEEecccccc--ccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhh
Q 045634 10 LTGHSKYKVFLSFRGEDT--RNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVET 69 (353)
Q Consensus 10 ~~~~~~~dvFiSy~~~D~--~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~ 69 (353)
.+.....-|||+|-..|. .-..+.++.+.|+..|..+...+ ..-|..|.++-.+++.+
T Consensus 141 ~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~--~~~GH~i~~e~~~~~~~ 200 (207)
T COG0400 141 LPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRW--HEGGHEIPPEELEAARS 200 (207)
T ss_pred ccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEE--ecCCCcCCHHHHHHHHH
Confidence 445677889999988886 35689999999999999998876 33688887776666543
No 195
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=29.27 E-value=37 Score=33.19 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=15.4
Q ss_pred HHHHHHh---cCceeeEeccccc
Q 045634 161 RIKKRLQ---LMKVLIVLDDVHD 180 (353)
Q Consensus 161 ~l~~~L~---~kr~LlVLDdv~~ 180 (353)
.+-++++ ++++|+++||+-.
T Consensus 226 tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 226 TMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHhcCCeeEEEecchhH
Confidence 4556663 5799999999975
No 196
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=29.02 E-value=56 Score=32.04 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=15.1
Q ss_pred HHHHHH---hcCceeeEeccccc
Q 045634 161 RIKKRL---QLMKVLIVLDDVHD 180 (353)
Q Consensus 161 ~l~~~L---~~kr~LlVLDdv~~ 180 (353)
.+-+++ .++++|+++|++-.
T Consensus 226 tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 226 TIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHhcCCceEEEeccchH
Confidence 455555 37899999999954
No 197
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=28.99 E-value=1e+02 Score=30.53 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=14.5
Q ss_pred HHHHH--hcCceeeEeccccc
Q 045634 162 IKKRL--QLMKVLIVLDDVHD 180 (353)
Q Consensus 162 l~~~L--~~kr~LlVLDdv~~ 180 (353)
+-+++ +++++|+|+||+-.
T Consensus 245 iAEyfrd~G~~VLlv~DdlTr 265 (502)
T PRK13343 245 IAEYFRDQGQDALIVYDDLSK 265 (502)
T ss_pred HHHHHHhCCCCEEEEecchHH
Confidence 44444 46899999999976
No 198
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=28.69 E-value=67 Score=22.60 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=17.2
Q ss_pred eEEEeccccccccchHHHHHHHHHhCCccee
Q 045634 17 KVFLSFRGEDTRNGFTSHLAAALHRKQIQFF 47 (353)
Q Consensus 17 dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~ 47 (353)
.|+|.|...+.....+..+.+.|...|+.++
T Consensus 45 ~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~ 75 (79)
T cd03364 45 EVILAFDGDEAGQKAALRALELLLKLGLNVR 75 (79)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 4555555555444455555555555555554
No 199
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=28.55 E-value=53 Score=27.49 Aligned_cols=43 Identities=9% Similarity=0.186 Sum_probs=30.4
Q ss_pred cchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeE
Q 045634 29 NGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDIS 73 (353)
Q Consensus 29 ~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~ 73 (353)
..-...+..+.+.+|+-+|.|. |. +|+.|...|.+.+.+++.+
T Consensus 35 ~~~i~~i~~~~~~rgVIIfTDp-D~-~GekIRk~i~~~vp~~kha 77 (174)
T TIGR00334 35 DETINLIKKAQKKQGVIILTDP-DF-PGEKIRKKIEQHLPGYENC 77 (174)
T ss_pred HHHHHHHHHHhhcCCEEEEeCC-CC-chHHHHHHHHHHCCCCeEE
Confidence 3456667777778888888887 32 6888877777777666654
No 200
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=28.34 E-value=65 Score=27.56 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=27.4
Q ss_pred eeeEeccccc--hHHHHHHHHhhcC-CCC-CcEEEEEeCcccc
Q 045634 171 VLIVLDDVHD--EFTELKSLARRLQ-FSG-RSRIIITSRDKGV 209 (353)
Q Consensus 171 ~LlVLDdv~~--~~~~~~~l~~~~~-~~~-gs~IivTTR~~~v 209 (353)
.++++|..+. .+.....+...+. ... +..||+||-++.+
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~i 301 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFI 301 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchh
Confidence 7899999986 3555555555555 444 8899999988765
No 201
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=28.31 E-value=80 Score=28.02 Aligned_cols=12 Identities=50% Similarity=0.833 Sum_probs=10.6
Q ss_pred CceeeEeccccc
Q 045634 169 MKVLIVLDDVHD 180 (353)
Q Consensus 169 kr~LlVLDdv~~ 180 (353)
.+.|||+||+.+
T Consensus 98 ~~~LiIlDD~~~ 109 (241)
T PF04665_consen 98 PRFLIILDDLGD 109 (241)
T ss_pred CCeEEEEeCCCC
Confidence 489999999976
No 202
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=28.30 E-value=81 Score=23.93 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=44.4
Q ss_pred cchHHHHHHHHHhCCcceeeccc-ccc---CC----CCccHHHHHHhhhcCeEEeeeccCcccchhhHhhhhhhhh
Q 045634 29 NGFTSHLAAALHRKQIQFFIDDE-ELE---KG----DEISPALFIAVETSDISVIILSKDYASSKWCLNELVNILD 96 (353)
Q Consensus 29 ~~f~~~l~~~L~~~g~~~~~d~~-~~~---~g----~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~~~~ 96 (353)
..+...+.+.|+..|+.+|.... +.. .. ..|...-.++|++|.+.|+.+..... +.-+.-|+--+..
T Consensus 13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~~-d~Gt~~ElG~A~a 87 (113)
T PF05014_consen 13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFRP-DSGTAFELGYAYA 87 (113)
T ss_dssp HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCC-CCcHHHHHHHHHH
Confidence 56899999999999998886441 111 12 22334445789999999999998663 3445556655544
No 203
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=27.58 E-value=63 Score=31.49 Aligned_cols=14 Identities=36% Similarity=0.482 Sum_probs=12.1
Q ss_pred hcCceeeEeccccc
Q 045634 167 QLMKVLIVLDDVHD 180 (353)
Q Consensus 167 ~~kr~LlVLDdv~~ 180 (353)
+++++|+++||+-.
T Consensus 251 ~G~~Vll~~DslTr 264 (440)
T TIGR01026 251 QGKDVLLLMDSVTR 264 (440)
T ss_pred CCCCEEEEEeChHH
Confidence 47899999999965
No 204
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=27.53 E-value=62 Score=31.31 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=14.9
Q ss_pred HHHHHH--hcCceeeEeccccc
Q 045634 161 RIKKRL--QLMKVLIVLDDVHD 180 (353)
Q Consensus 161 ~l~~~L--~~kr~LlVLDdv~~ 180 (353)
.+-+++ +++++|+++||+-.
T Consensus 220 ~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 220 AIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHcCCCEEEeccchhH
Confidence 344444 46899999999965
No 205
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=27.52 E-value=4.9e+02 Score=23.97 Aligned_cols=182 Identities=12% Similarity=0.103 Sum_probs=86.3
Q ss_pred hhHhhhhhhhhccccCCcEEEeEEe--ecCCcccc-cccc----ccc----c--cceecccCCchHHHHHHHHHHhhccC
Q 045634 86 WCLNELVNILDCKKMNGKIVIPVFY--QVDPSDVR-KQRR----SFG----E--AFVHHENNFPDKVQKWRDALTEASNL 152 (353)
Q Consensus 86 ~~~~El~~~~~~~~~~~~~vipI~g--gVgkt~~~-~~~~----~f~----~--~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (353)
--++.|+.++.........=+.|+| +.|||.+- +... .++ . .+.......++.......+|.++.-.
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 3467777777766555555678888 89999432 2211 111 0 11111112234455566666666422
Q ss_pred CCC----CchHHHHHHHHhc-CceeeEeccccch----HHHHHHHHhhcC-CCC---CcEEEEEeCccccccccC-----
Q 045634 153 SGY----DSTESRIKKRLQL-MKVLIVLDDVHDE----FTELKSLARRLQ-FSG---RSRIIITSRDKGVLDKCG----- 214 (353)
Q Consensus 153 ~g~----~~~~~~l~~~L~~-kr~LlVLDdv~~~----~~~~~~l~~~~~-~~~---gs~IivTTR~~~v~~~~~----- 214 (353)
..- ........+.++. +-=+||+|.+.+- ..+-..+...+. .++ =+-|.+-|++.--+-..+
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 111 1111334455554 3447899999761 122223333333 222 233444443322111110
Q ss_pred ccceEEeCCCChh-HHHHHHHHhhh--ccC-CCCccHHHHHHHHHHHcCCChHHHHH
Q 045634 215 VNNMYEVKGLKYN-KALELFCRKAF--RET-NCSHDLLELSEEVVRHADGNPLALEV 267 (353)
Q Consensus 215 ~~~~~~l~~L~~~-ea~~Lf~~~a~--~~~-~~~~~~~~~~~~i~~~c~glPLal~~ 267 (353)
--..+.++.-..+ |..+|+..... .-. ...-...+++..|...++|+.--+..
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 1124455555443 44455433221 111 12224578899999999998765543
No 206
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=27.43 E-value=1.2e+02 Score=30.48 Aligned_cols=62 Identities=13% Similarity=0.209 Sum_probs=41.6
Q ss_pred CceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccC
Q 045634 14 SKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKD 80 (353)
Q Consensus 14 ~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 80 (353)
...||||-.-+++. ...+..++..|+++|++|-+|. .+.++...+..|-+.--..++++.++
T Consensus 469 ~p~~v~vi~~~~~~-~~~a~~ia~~LR~~Gi~v~~d~----~~~sl~~q~k~A~~~g~~~~iiiG~~ 530 (563)
T TIGR00418 469 APVQVVVIPVNERH-LDYAKKVAQKLKKAGIRVDVDD----RNERLGKKIREAQKQKIPYMLVVGDK 530 (563)
T ss_pred CCceEEEEEccchH-HHHHHHHHHHHHHcCCEEEEEC----CCCCHHHHHHHHHhcCCCEEEEEchh
Confidence 46788777655543 4578899999999999999986 24566666666644333345555543
No 207
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=27.25 E-value=84 Score=30.98 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=12.2
Q ss_pred hcCceeeEeccccc
Q 045634 167 QLMKVLIVLDDVHD 180 (353)
Q Consensus 167 ~~kr~LlVLDdv~~ 180 (353)
+++++|+|+||+-.
T Consensus 231 ~G~~VLlv~DdlTr 244 (485)
T CHL00059 231 RGRHTLIIYDDLSK 244 (485)
T ss_pred cCCCEEEEEcChhH
Confidence 46899999999976
No 208
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=27.04 E-value=89 Score=30.67 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=15.9
Q ss_pred HHHHHHh---cCceeeEeccccc
Q 045634 161 RIKKRLQ---LMKVLIVLDDVHD 180 (353)
Q Consensus 161 ~l~~~L~---~kr~LlVLDdv~~ 180 (353)
.+-++++ ++++||++||+-.
T Consensus 229 tiAEyfr~d~G~~VLli~DslTR 251 (460)
T PRK04196 229 TAAEYLAFEKGMHVLVILTDMTN 251 (460)
T ss_pred HHHHHHHHhcCCcEEEEEcChHH
Confidence 5666666 3899999999965
No 209
>PTZ00202 tuzin; Provisional
Probab=26.83 E-value=2.8e+02 Score=27.47 Aligned_cols=152 Identities=11% Similarity=-0.008 Sum_probs=75.0
Q ss_pred cCcccchhhHhhhhhhhhccccCCcEEEeEEe--ecCCcccccc-ccccc-ccceecccCCchHHHHHHHHHHhhccCCC
Q 045634 79 KDYASSKWCLNELVNILDCKKMNGKIVIPVFY--QVDPSDVRKQ-RRSFG-EAFVHHENNFPDKVQKWRDALTEASNLSG 154 (353)
Q Consensus 79 ~~~~~s~~~~~El~~~~~~~~~~~~~vipI~g--gVgkt~~~~~-~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 154 (353)
+.|++..--+.+|..++........+++-|.| |+|||.+-+. ..... ..+..+.. ...+.++..+.+++-.+.
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr---g~eElLr~LL~ALGV~p~ 338 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR---GTEDTLRSVVKALGVPNV 338 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC---CHHHHHHHHHHHcCCCCc
Confidence 45666666677787777655444455777777 9999965322 21111 12222222 223455555555543222
Q ss_pred CCch--HHHHHHHH-----h-cCceeeEeccccc--hHHHHHHHHhhcC-CCCCcEEEEEeCcccccccc---CccceEE
Q 045634 155 YDST--ESRIKKRL-----Q-LMKVLIVLDDVHD--EFTELKSLARRLQ-FSGRSRIIITSRDKGVLDKC---GVNNMYE 220 (353)
Q Consensus 155 ~~~~--~~~l~~~L-----~-~kr~LlVLDdv~~--~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~~---~~~~~~~ 220 (353)
.... ...|++.+ . +++.+||+-=-.. -...+++... +- ...-|+|++---.+.+.... .--.-|-
T Consensus 339 ~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evpleslt~~~~~lprldf~~ 417 (550)
T PTZ00202 339 EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPLESLTIANTLLPRLDFYL 417 (550)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehHhhcchhcccCccceeEe
Confidence 2211 12333332 3 6777777732221 0112222211 11 23346777755444432111 1124688
Q ss_pred eCCCChhHHHHHHH
Q 045634 221 VKGLKYNKALELFC 234 (353)
Q Consensus 221 l~~L~~~ea~~Lf~ 234 (353)
+++++.++|.+.-.
T Consensus 418 vp~fsr~qaf~y~~ 431 (550)
T PTZ00202 418 VPNFSRSQAFAYTQ 431 (550)
T ss_pred cCCCCHHHHHHHHh
Confidence 89999998876543
No 210
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=26.76 E-value=1.2e+02 Score=24.70 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCceeeEeccccc--hHHHHHHHHhhcC--CCCCcEEEEEeCccccc
Q 045634 159 ESRIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ--FSGRSRIIITSRDKGVL 210 (353)
Q Consensus 159 ~~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~--~~~gs~IivTTR~~~v~ 210 (353)
.-.+-..+..+.-+++||+.-. +....+.+...+. ...|..||++|.+...+
T Consensus 90 rl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 90 MVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 3456666667788899999875 3334444444443 23467788888886643
No 211
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=26.26 E-value=1e+02 Score=29.67 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=12.5
Q ss_pred hcCceeeEeccccc
Q 045634 167 QLMKVLIVLDDVHD 180 (353)
Q Consensus 167 ~~kr~LlVLDdv~~ 180 (353)
.+++++|++|.+..
T Consensus 253 ~GkdVVLlIDEitR 266 (415)
T TIGR00767 253 HKKDVVILLDSITR 266 (415)
T ss_pred cCCCeEEEEEChhH
Confidence 57899999999976
No 212
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=26.04 E-value=51 Score=32.18 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=12.1
Q ss_pred hcCceeeEeccccc
Q 045634 167 QLMKVLIVLDDVHD 180 (353)
Q Consensus 167 ~~kr~LlVLDdv~~ 180 (353)
+++++|+++||+-.
T Consensus 263 ~G~~Vll~~DslTr 276 (455)
T PRK07960 263 RGQHVLLIMDSLTR 276 (455)
T ss_pred cCCCeEEEecchhH
Confidence 46899999999965
No 213
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=25.99 E-value=4.3e+02 Score=24.18 Aligned_cols=66 Identities=12% Similarity=0.205 Sum_probs=42.1
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-cccccC-ccceEEeCCCChhHHHHHHH
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKCG-VNNMYEVKGLKYNKALELFC 234 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~ 234 (353)
+++=.+|+|+++. .....+.++..+. ..+++.+|++|.+.. ++..+. -...+.+.. +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 3455788899987 4667888888887 667777777776543 554442 224566655 5555555554
No 214
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=25.61 E-value=94 Score=23.73 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=23.1
Q ss_pred EEEeccccccccchHHHHHHHHHhCCcceee
Q 045634 18 VFLSFRGEDTRNGFTSHLAAALHRKQIQFFI 48 (353)
Q Consensus 18 vFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~ 48 (353)
||+|....| +.-...+.+.|...|++++-
T Consensus 3 vlisv~~~d--k~~~~~~a~~l~~~G~~i~a 31 (116)
T cd01423 3 ILISIGSYS--KPELLPTAQKLSKLGYKLYA 31 (116)
T ss_pred EEEecCccc--chhHHHHHHHHHHCCCEEEE
Confidence 799998877 34566888899999998864
No 215
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=25.56 E-value=93 Score=30.79 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=15.1
Q ss_pred HHHHHH--hcCceeeEeccccc
Q 045634 161 RIKKRL--QLMKVLIVLDDVHD 180 (353)
Q Consensus 161 ~l~~~L--~~kr~LlVLDdv~~ 180 (353)
.+-+++ +++++|+|+||+-.
T Consensus 244 aiAEyfrd~G~~VLlv~DdlTr 265 (497)
T TIGR03324 244 SIGEHFMEQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHHHhCCCCEEEEEcChhH
Confidence 344455 56899999999976
No 216
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.44 E-value=1.7e+02 Score=23.89 Aligned_cols=60 Identities=10% Similarity=0.204 Sum_probs=36.3
Q ss_pred HHHHHHHhcCceeeEeccccc--hHHHHHHHHhhcC-CCCCcEEEEEeCccccccccCccceEEe
Q 045634 160 SRIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ-FSGRSRIIITSRDKGVLDKCGVNNMYEV 221 (353)
Q Consensus 160 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~~~~~~~~~l 221 (353)
-.|-..+..+.-+++||.... +....+.+...+. ...+..||++|.+...... .++.+.+
T Consensus 105 l~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 345566667888999999875 3333444444333 2335678888887766543 3445444
No 217
>CHL00181 cbbX CbbX; Provisional
Probab=25.37 E-value=3.6e+02 Score=24.50 Aligned_cols=70 Identities=7% Similarity=0.020 Sum_probs=43.4
Q ss_pred ceeeEeccccc----------hHHHHHHHHhhcC-CCCCcEEEEEeCcccccccc--------CccceEEeCCCChhHHH
Q 045634 170 KVLIVLDDVHD----------EFTELKSLARRLQ-FSGRSRIIITSRDKGVLDKC--------GVNNMYEVKGLKYNKAL 230 (353)
Q Consensus 170 r~LlVLDdv~~----------~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~ 230 (353)
.-+|++|++.. .....+.+...+. ...+.+||.++....+.... .....+.+++++.+|-.
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 35889999964 0233444555454 44556777777543321111 13457899999999999
Q ss_pred HHHHHhhhc
Q 045634 231 ELFCRKAFR 239 (353)
Q Consensus 231 ~Lf~~~a~~ 239 (353)
+++...+-.
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 998877643
No 218
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=24.39 E-value=1.6e+02 Score=28.67 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=12.2
Q ss_pred hcCceeeEeccccc
Q 045634 167 QLMKVLIVLDDVHD 180 (353)
Q Consensus 167 ~~kr~LlVLDdv~~ 180 (353)
+++++|+++|++-.
T Consensus 244 ~G~~VLlilDslTr 257 (432)
T PRK06793 244 QGNNVLLMMDSVTR 257 (432)
T ss_pred cCCcEEEEecchHH
Confidence 46899999999976
No 219
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=24.32 E-value=1.1e+02 Score=26.42 Aligned_cols=60 Identities=12% Similarity=0.167 Sum_probs=35.0
Q ss_pred HHHHHHhcCceeeEeccccc--hHHHHHHHHhhcC--CCCCcEEEEEeCccccccccCccceEEe
Q 045634 161 RIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ--FSGRSRIIITSRDKGVLDKCGVNNMYEV 221 (353)
Q Consensus 161 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~--~~~gs~IivTTR~~~v~~~~~~~~~~~l 221 (353)
.|-..+-.+.-+++||..-. +....+.+...+. ...|..||++|.+...+..+ .++++.+
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~-~d~i~~~ 222 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELV-ADRVMDV 222 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-cceeEec
Confidence 45555666778999999865 3333344444333 23467788888886654432 2344443
No 220
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=24.28 E-value=4.2e+02 Score=24.26 Aligned_cols=95 Identities=16% Similarity=0.073 Sum_probs=46.4
Q ss_pred CceeeEeccccc----hHHHHHHHHhhcC-CCCCcEEEEEeCccc-----cccccC-ccceEEeCCC---ChhHHHHHHH
Q 045634 169 MKVLIVLDDVHD----EFTELKSLARRLQ-FSGRSRIIITSRDKG-----VLDKCG-VNNMYEVKGL---KYNKALELFC 234 (353)
Q Consensus 169 kr~LlVLDdv~~----~~~~~~~l~~~~~-~~~gs~IivTTR~~~-----v~~~~~-~~~~~~l~~L---~~~ea~~Lf~ 234 (353)
.+-++|++|... ....++.+...+. ..+.+.+|+++..+. ...... .....+...+ +.++-.....
T Consensus 61 ~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~ 140 (326)
T PRK07452 61 GGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVE 140 (326)
T ss_pred CceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHH
Confidence 355566776521 1345666766666 556677777543321 111110 1223333333 3344444455
Q ss_pred HhhhccCCCCccHHHHHHHHHHHcCCChHHH
Q 045634 235 RKAFRETNCSHDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 235 ~~a~~~~~~~~~~~~~~~~i~~~c~glPLal 265 (353)
..+-... -.-..+.+..+++.+|+.+.++
T Consensus 141 ~~~~~~g--~~i~~~a~~~L~~~~g~dl~~l 169 (326)
T PRK07452 141 RTAQELG--VKLTPEAAELLAEAVGNDSRRL 169 (326)
T ss_pred HHHHHcC--CCCCHHHHHHHHHHhCccHHHH
Confidence 5442222 1123466777778888777655
No 221
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=23.83 E-value=1.8e+02 Score=24.01 Aligned_cols=60 Identities=8% Similarity=0.094 Sum_probs=37.0
Q ss_pred HHHHHHHhcCceeeEeccccc--hHHHHHHHHhhcC-CCCCcEEEEEeCccccccccCccceEEe
Q 045634 160 SRIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ-FSGRSRIIITSRDKGVLDKCGVNNMYEV 221 (353)
Q Consensus 160 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~~~~~~~~~l 221 (353)
-.|-..+..++=+++||.... +....+.+...+. ...+..||++|.+...... .++.+.+
T Consensus 107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 456666677888999999875 3333344444333 2346778888888776542 3455544
No 222
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=23.28 E-value=2.7e+02 Score=23.67 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=20.7
Q ss_pred HhcCceeeEeccccchHHHHHHHHhhcC-CCCCcEEEEEeCcc
Q 045634 166 LQLMKVLIVLDDVHDEFTELKSLARRLQ-FSGRSRIIITSRDK 207 (353)
Q Consensus 166 L~~kr~LlVLDdv~~~~~~~~~l~~~~~-~~~gs~IivTTR~~ 207 (353)
+..-..++|++=-.. .+..+.+..... .+.. .+|+|=-|+
T Consensus 112 ~~~~~~~LVlsa~~~-~~~~~~~~~~~~~~~~~-~lIlTKlDe 152 (196)
T PF00448_consen 112 LNPDEVHLVLSATMG-QEDLEQALAFYEAFGID-GLILTKLDE 152 (196)
T ss_dssp HSSSEEEEEEEGGGG-GHHHHHHHHHHHHSSTC-EEEEESTTS
T ss_pred cCCccceEEEecccC-hHHHHHHHHHhhcccCc-eEEEEeecC
Confidence 344567777776665 444444443333 3333 466654443
No 223
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=23.17 E-value=92 Score=30.27 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=14.4
Q ss_pred HHHHH--hcCceeeEeccccc
Q 045634 162 IKKRL--QLMKVLIVLDDVHD 180 (353)
Q Consensus 162 l~~~L--~~kr~LlVLDdv~~ 180 (353)
+-+++ +++++|+++||+-.
T Consensus 236 iAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 236 IAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHCCCcEEEEEeCHHH
Confidence 44444 46899999999975
No 224
>PRK09099 type III secretion system ATPase; Provisional
Probab=23.07 E-value=72 Score=31.09 Aligned_cols=19 Identities=21% Similarity=0.502 Sum_probs=14.4
Q ss_pred HHHHH--hcCceeeEeccccc
Q 045634 162 IKKRL--QLMKVLIVLDDVHD 180 (353)
Q Consensus 162 l~~~L--~~kr~LlVLDdv~~ 180 (353)
+-+++ +++++|+++||+-.
T Consensus 244 iAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 244 IAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHcCCCEEEeccchhH
Confidence 44444 46899999999976
No 225
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=23.06 E-value=45 Score=27.39 Aligned_cols=37 Identities=8% Similarity=0.113 Sum_probs=20.5
Q ss_pred cccchhhHhhhhhhhhccccCCcEEEeEEe--ecCCccc
Q 045634 81 YASSKWCLNELVNILDCKKMNGKIVIPVFY--QVDPSDV 117 (353)
Q Consensus 81 ~~~s~~~~~El~~~~~~~~~~~~~vipI~g--gVgkt~~ 117 (353)
+++...-++++...+.........++-|.| |+|||.+
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~l 40 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSL 40 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHH
Confidence 345556677777777644555567888888 9999944
No 226
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=22.95 E-value=1.8e+02 Score=24.86 Aligned_cols=60 Identities=7% Similarity=0.112 Sum_probs=35.4
Q ss_pred HHHHHHHhcCceeeEeccccc--hHHHHHHHHhhcC-CCCCcEEEEEeCccccccccCccceEEe
Q 045634 160 SRIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ-FSGRSRIIITSRDKGVLDKCGVNNMYEV 221 (353)
Q Consensus 160 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~~~~~~~~~l 221 (353)
-.|-..+..+.-+++||+... +....+.+...+. ...+..||++|.+...... .++++.+
T Consensus 148 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~i~~l 210 (221)
T cd03244 148 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID--SDRILVL 210 (221)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEE
Confidence 345566667788999999875 3333334444333 2335678888877765443 3445544
No 227
>PRK08149 ATP synthase SpaL; Validated
Probab=22.74 E-value=54 Score=31.78 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=12.2
Q ss_pred hcCceeeEeccccc
Q 045634 167 QLMKVLIVLDDVHD 180 (353)
Q Consensus 167 ~~kr~LlVLDdv~~ 180 (353)
++|++||++||+-.
T Consensus 239 ~G~~Vll~~DslTr 252 (428)
T PRK08149 239 QGKRVVLFIDSMTR 252 (428)
T ss_pred cCCCEEEEccchHH
Confidence 47899999999965
No 228
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=22.69 E-value=63 Score=30.12 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=12.2
Q ss_pred hcCceeeEeccccc
Q 045634 167 QLMKVLIVLDDVHD 180 (353)
Q Consensus 167 ~~kr~LlVLDdv~~ 180 (353)
++|.+|+++||+-.
T Consensus 157 ~g~~Vll~~Dsltr 170 (326)
T cd01136 157 QGKDVLLLMDSLTR 170 (326)
T ss_pred cCCCeEEEeccchH
Confidence 57899999999865
No 229
>PRK10536 hypothetical protein; Provisional
Probab=22.57 E-value=1.4e+02 Score=26.82 Aligned_cols=41 Identities=12% Similarity=0.303 Sum_probs=27.5
Q ss_pred HHhcCc---eeeEeccccc-hHHHHHHHHhhcCCCCCcEEEEEeCcc
Q 045634 165 RLQLMK---VLIVLDDVHD-EFTELKSLARRLQFSGRSRIIITSRDK 207 (353)
Q Consensus 165 ~L~~kr---~LlVLDdv~~-~~~~~~~l~~~~~~~~gs~IivTTR~~ 207 (353)
+++++. -++|+|.+.+ ...+...+... .+.+|++|+|--..
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR--~g~~sk~v~~GD~~ 213 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTAAQMKMFLTR--LGENVTVIVNGDIT 213 (262)
T ss_pred HhcCCcccCCEEEEechhcCCHHHHHHHHhh--cCCCCEEEEeCChh
Confidence 455554 4899999987 34444444432 68999999987544
No 230
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=22.37 E-value=86 Score=26.22 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=21.8
Q ss_pred CceeeEeccccc----hHHHHHHHHhhcC-CCCCcEEEEEeCccc
Q 045634 169 MKVLIVLDDVHD----EFTELKSLARRLQ-FSGRSRIIITSRDKG 208 (353)
Q Consensus 169 kr~LlVLDdv~~----~~~~~~~l~~~~~-~~~gs~IivTTR~~~ 208 (353)
+-=|||||.+-. ..-..+.+...+. .....-||+|-|+..
T Consensus 96 ~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 96 EYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAP 140 (172)
T ss_dssp T-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--
T ss_pred CCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 344999999864 1222344444444 567889999999875
No 231
>PRK06921 hypothetical protein; Provisional
Probab=22.24 E-value=65 Score=28.99 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=20.3
Q ss_pred CceeeEecccc-----ch-HHHHH--HHHhhcC--CCCCcEEEEEeCc
Q 045634 169 MKVLIVLDDVH-----DE-FTELK--SLARRLQ--FSGRSRIIITSRD 206 (353)
Q Consensus 169 kr~LlVLDdv~-----~~-~~~~~--~l~~~~~--~~~gs~IivTTR~ 206 (353)
+-=||||||+. .+ ...|. .+...+. ...+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 35689999992 11 12332 2333333 2335567888753
No 232
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.86 E-value=1.9e+02 Score=24.91 Aligned_cols=60 Identities=8% Similarity=0.198 Sum_probs=36.7
Q ss_pred HHHHHHHhcCceeeEeccccc--hHHHHHHHHhhcC-CCCCcEEEEEeCccccccccCccceEEe
Q 045634 160 SRIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ-FSGRSRIIITSRDKGVLDKCGVNNMYEV 221 (353)
Q Consensus 160 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~~~~~~~~~l 221 (353)
-.|-..+..+.=+++||+.-. +....+.+...+. ...|..||++|.+...... .++++.+
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~v~~l 209 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN--ADRIVVL 209 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEe
Confidence 355566666777999999865 3444444444443 3346678888887766543 4455544
No 233
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.84 E-value=2.2e+02 Score=19.69 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=22.9
Q ss_pred eEEEeccccccccchHHHHHHHHHhCCcceeecc
Q 045634 17 KVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDD 50 (353)
Q Consensus 17 dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~ 50 (353)
||||-..+.+.. .-+-.+...|+.+|+++.++.
T Consensus 3 ~v~i~~~~~~~~-~~a~~i~~~Lr~~g~~v~~~~ 35 (91)
T cd00859 3 DVYVVPLGEGAL-SEALELAEQLRDAGIKAEIDY 35 (91)
T ss_pred cEEEEEcChHHH-HHHHHHHHHHHHCCCEEEEec
Confidence 676665444322 346778999999999998765
No 234
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=21.84 E-value=2e+02 Score=29.08 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=30.3
Q ss_pred CCCceeEEEeccc--cccccchHHHHHHHHHhCCcceeecccc
Q 045634 12 GHSKYKVFLSFRG--EDTRNGFTSHLAAALHRKQIQFFIDDEE 52 (353)
Q Consensus 12 ~~~~~dvFiSy~~--~D~~~~f~~~l~~~L~~~g~~~~~d~~~ 52 (353)
..-.|+|+|---+ .+.....+..|+..|+.+|+++.+|+.+
T Consensus 465 ~iaP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~v~~Ddr~ 507 (565)
T PRK09194 465 AIAPFDVHIVPVNMKDEEVKELAEKLYAELQAAGIEVLLDDRK 507 (565)
T ss_pred ccCCceEEEEECCCCcHHHHHHHHHHHHHHhccCCeEEEECCC
Confidence 3456889776543 2333458889999999999999999844
No 235
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=21.83 E-value=93 Score=30.05 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=14.2
Q ss_pred HHHHH--hcCceeeEeccccc
Q 045634 162 IKKRL--QLMKVLIVLDDVHD 180 (353)
Q Consensus 162 l~~~L--~~kr~LlVLDdv~~ 180 (353)
+-+++ +++++|+++||+-.
T Consensus 218 iAEyfr~~G~~Vll~~Dsltr 238 (413)
T TIGR03497 218 IAEYFRDQGKDVLLMMDSVTR 238 (413)
T ss_pred HHHHHHHCCCCEEEEEcCcHH
Confidence 44444 46899999999965
No 236
>PRK06820 type III secretion system ATPase; Validated
Probab=21.72 E-value=84 Score=30.62 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=14.3
Q ss_pred HHHHH--hcCceeeEeccccc
Q 045634 162 IKKRL--QLMKVLIVLDDVHD 180 (353)
Q Consensus 162 l~~~L--~~kr~LlVLDdv~~ 180 (353)
+-+++ +++++|+++||+-.
T Consensus 244 iAEyfrd~G~~VLl~~Dsltr 264 (440)
T PRK06820 244 IAEYFRDRGKKVLLMADSLTR 264 (440)
T ss_pred HHHHHHHcCCCEEEEccchhH
Confidence 44444 47899999999965
No 237
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=21.66 E-value=5.5e+02 Score=26.42 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=40.9
Q ss_pred hcCceeeEeccccchH------------H----HHHHHHhhcC-C--CCCcEEEEEeCcccccccc-----CccceEEeC
Q 045634 167 QLMKVLIVLDDVHDEF------------T----ELKSLARRLQ-F--SGRSRIIITSRDKGVLDKC-----GVNNMYEVK 222 (353)
Q Consensus 167 ~~kr~LlVLDdv~~~~------------~----~~~~l~~~~~-~--~~gs~IivTTR~~~v~~~~-----~~~~~~~l~ 222 (353)
...+.+|++|+++. . . ....+...+. + ..+.-+|.||......... ..+..+.++
T Consensus 242 ~~~P~IifIDEiD~-l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~ 320 (644)
T PRK10733 242 KAAPCIIFIDEIDA-VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 320 (644)
T ss_pred hcCCcEEEehhHhh-hhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcC
Confidence 34678999999875 2 1 1223332233 2 2234455577655543211 135677888
Q ss_pred CCChhHHHHHHHHhhh
Q 045634 223 GLKYNKALELFCRKAF 238 (353)
Q Consensus 223 ~L~~~ea~~Lf~~~a~ 238 (353)
..+.++-.+++..+.-
T Consensus 321 ~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 321 LPDVRGREQILKVHMR 336 (644)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 8888888888877663
No 238
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.65 E-value=1.6e+02 Score=24.19 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=36.8
Q ss_pred HHHHHHHhcCceeeEeccccc--hHHHHHHHHhhcC--CCCCcEEEEEeCccccccccCccceEEe
Q 045634 160 SRIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ--FSGRSRIIITSRDKGVLDKCGVNNMYEV 221 (353)
Q Consensus 160 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~--~~~gs~IivTTR~~~v~~~~~~~~~~~l 221 (353)
-.+-..+..+.=+++||+.-. +....+.+...+. ...|..||++|.+......+ .++++.+
T Consensus 104 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 104 LALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 456667777888999999875 3333334433333 22367789998887654432 2344444
No 239
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=21.59 E-value=1.6e+02 Score=25.24 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=32.0
Q ss_pred HHHHHHhcCceeeEeccccc--hHHHHHHHHhhcC--CCCCcEEEEEeCcccccc
Q 045634 161 RIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ--FSGRSRIIITSRDKGVLD 211 (353)
Q Consensus 161 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~--~~~gs~IivTTR~~~v~~ 211 (353)
.+-..+...+-+++||+.-. +....+.+...+. ...|..||++|.+.....
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 45555666788899999875 3333344444333 234667899998877553
No 240
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=21.49 E-value=3.3e+02 Score=19.79 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=42.8
Q ss_pred EEEeccccccccchHHHHHHHHHhCCcceeeccc---------cccCCCCccHHHHHHhhhcCeEEeeeccCcc
Q 045634 18 VFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDE---------ELEKGDEISPALFIAVETSDISVIILSKDYA 82 (353)
Q Consensus 18 vFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~---------~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~ 82 (353)
+|.|..|.--.-+++.+|...|.++|.++..-+- |..++ .......++..|...|++..++..
T Consensus 3 ~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~~d~viiD~p~~--~~~~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 3 AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQYDYIIIDTPPS--LGLLTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCEEEEeCcCC--CCHHHHHHHHHCCEEEEeccCCHH
Confidence 4677776655566899999999999988765331 22233 334555778888888888877653
No 241
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=21.47 E-value=1.3e+02 Score=28.56 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=35.2
Q ss_pred HHHHHHhhhcC-eEEeeecc-CcccchhhHhhhhhhhhccccCCcEEEe
Q 045634 61 PALFIAVETSD-ISVIILSK-DYASSKWCLNELVNILDCKKMNGKIVIP 107 (353)
Q Consensus 61 ~~i~~~i~~s~-~~i~v~S~-~~~~s~~~~~El~~~~~~~~~~~~~vip 107 (353)
+.+.+++.+.+ ...++.+| |-.++-|..+||.++.+-....+.+||.
T Consensus 148 ~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 148 DALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred HHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEe
Confidence 56778888887 45555665 6788999999999999866555655554
No 242
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=21.42 E-value=1.9e+02 Score=28.09 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=38.0
Q ss_pred CceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeecc
Q 045634 14 SKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSK 79 (353)
Q Consensus 14 ~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~ 79 (353)
...||+|-+-+.+. ...+-.+...|+++|+++-+|. .+.++...+..+-+.--..++++.+
T Consensus 324 ~~~~v~v~~~~~~~-~~~a~~ia~~LR~~Gi~veid~----~~~~l~k~~k~A~~~~~~~viiiG~ 384 (430)
T CHL00201 324 QSIDVYIATQGLKA-QKKGWEIIQFLEKQNIKFELDL----SSSNFHKQIKQAGKKRAKACIILGD 384 (430)
T ss_pred CCCCEEEEEcCHHH-HHHHHHHHHHHHhCCCeEEEee----CCCCHHHHHHHHHHcCCCEEEEEec
Confidence 34689888755443 3467788999999999988764 2344555555554433334555554
No 243
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=21.27 E-value=5.1e+02 Score=23.48 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=31.3
Q ss_pred cchHHHHHHHHHhC----CcceeeccccccCCC-CccHHHHHHhhhc---CeEEeeecc
Q 045634 29 NGFTSHLAAALHRK----QIQFFIDDEELEKGD-EISPALFIAVETS---DISVIILSK 79 (353)
Q Consensus 29 ~~f~~~l~~~L~~~----g~~~~~d~~~~~~g~-~~~~~i~~~i~~s---~~~i~v~S~ 79 (353)
..|+..|+..+... ++.+.++- ....|+ .+...+.+.+++- +..++.|++
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G-~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~ 59 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYG-EWGSGKSSFLNMLKEELKEDNKEKYIFIYFNA 59 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEEC-CCCCCHHHHHHHHHHHHhcccccceeeEEEcc
Confidence 34777788887753 55555654 556675 3445556666666 566777776
No 244
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=21.25 E-value=1.1e+02 Score=24.21 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=39.4
Q ss_pred eeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCe
Q 045634 16 YKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDI 72 (353)
Q Consensus 16 ~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~ 72 (353)
.++|+=..+.=....+...+..++..+|+-++.|. |. +|+.|...|.+.+.+++.
T Consensus 30 ~~~i~~~g~~i~~~~~ie~i~~~~~~k~VIILTD~-D~-~Ge~Irk~l~~~l~~~~~ 84 (127)
T COG1658 30 AGVIITNGSAINSLETIELIKKAQKYKGVIILTDP-DR-KGERIRKKLKEYLPGAKG 84 (127)
T ss_pred CceEEEcCCccchHHHHHHHHHhhccCCEEEEeCC-Cc-chHHHHHHHHHHhccccc
Confidence 45666655432224588889999999999999987 33 788888888887777443
No 245
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=21.17 E-value=5.7e+02 Score=22.54 Aligned_cols=68 Identities=7% Similarity=0.076 Sum_probs=39.6
Q ss_pred eeeEeccccc-h--------HHHHHHHHhhcC-CCCCcEEEEEeCcccccc------cc--CccceEEeCCCChhHHHHH
Q 045634 171 VLIVLDDVHD-E--------FTELKSLARRLQ-FSGRSRIIITSRDKGVLD------KC--GVNNMYEVKGLKYNKALEL 232 (353)
Q Consensus 171 ~LlVLDdv~~-~--------~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~------~~--~~~~~~~l~~L~~~ea~~L 232 (353)
-+|++|+++. . ....+.+..... ......+|+++.....-. .. .....+++++++.++-.++
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~I 186 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEI 186 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHH
Confidence 4889999974 0 224455555544 333345555554322210 01 1234678899999999999
Q ss_pred HHHhhh
Q 045634 233 FCRKAF 238 (353)
Q Consensus 233 f~~~a~ 238 (353)
+.+.+-
T Consensus 187 l~~~~~ 192 (261)
T TIGR02881 187 AERMVK 192 (261)
T ss_pred HHHHHH
Confidence 887763
No 246
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=21.16 E-value=4.4e+02 Score=22.74 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=40.8
Q ss_pred Eeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-cccccC--------------ccceEEeCCCChhHHHHHHHH
Q 045634 174 VLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKCG--------------VNNMYEVKGLKYNKALELFCR 235 (353)
Q Consensus 174 VLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~~--------------~~~~~~l~~L~~~ea~~Lf~~ 235 (353)
|+++++. .....+.+...+. ...++.+|+.|.++. +..... ..-.+.+++|+.++..+.+..
T Consensus 59 iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 59 IVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred EEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH
Confidence 4567765 3567778887777 666666666665544 333321 012467899999999998877
No 247
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=21.16 E-value=2e+02 Score=19.96 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=21.7
Q ss_pred CCCCCCceeEEEeccccccccchHHHHHHHHHhC
Q 045634 9 SLTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRK 42 (353)
Q Consensus 9 ~~~~~~~~dvFiSy~~~D~~~~f~~~l~~~L~~~ 42 (353)
+....|.|.+||-+.|.| .. +..+...|++.
T Consensus 36 ~~~~~~~y~Ffvd~~~~~--~~-~~~~l~~L~~~ 66 (74)
T cd04904 36 SRRNGSEYEFFVDCEVDR--GD-LDQLISSLRRV 66 (74)
T ss_pred CCCCCceEEEEEEEEcCh--HH-HHHHHHHHHHh
Confidence 445678999999999955 22 55666666654
No 248
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=21.05 E-value=1.7e+02 Score=24.22 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=31.8
Q ss_pred HHHHHHHhcCceeeEeccccc--hHHHHHHHHhhcC--CCCCcEEEEEeCccccc
Q 045634 160 SRIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ--FSGRSRIIITSRDKGVL 210 (353)
Q Consensus 160 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~--~~~gs~IivTTR~~~v~ 210 (353)
-.|-..+-.+.-+++||+.-. +....+.+...+. ...|..||++|.+....
T Consensus 113 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 167 (182)
T cd03215 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDEL 167 (182)
T ss_pred HHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 345566667888999999865 3333344443333 23467889998886543
No 249
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=20.98 E-value=2.4e+02 Score=27.43 Aligned_cols=63 Identities=17% Similarity=0.106 Sum_probs=38.1
Q ss_pred ceeEEEeccc--cccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCc
Q 045634 15 KYKVFLSFRG--EDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDY 81 (353)
Q Consensus 15 ~~dvFiSy~~--~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~ 81 (353)
.++|+|---+ .+.....+..|+..|..+|++|.+|+.+ .++...+..+-..---.++++.++-
T Consensus 345 P~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~~----~~lg~ki~~a~~~giP~~iiVG~~e 409 (439)
T PRK12325 345 PFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDTD----ERPGAKFATMDLIGLPWQIIVGPKG 409 (439)
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC----CCHhHHHHHHHHcCCCEEEEECCcc
Confidence 4788765432 2334458889999999999999998743 3444444444222222444454443
No 250
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=20.78 E-value=4.2e+02 Score=20.94 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=37.2
Q ss_pred HHHHHHhhhccCCHhHHHHHhhhhccCC-CCCHHHHHHHHhcC-----chHHHHhhCCCcEee
Q 045634 284 IYNVLKISYDELNLEEKKTFLDIACFFT-GEDIDFVRRIRDDP-----SSLDTFVDKSLITIF 340 (353)
Q Consensus 284 v~~~l~~sy~~L~~~~k~~fl~la~fp~-~~~~~~l~~~w~~~-----~~l~~L~~~sLl~~~ 340 (353)
+..+++..| .|.+....+|..+-- .+ +.+.+.+.....-. ..++.|++.||++..
T Consensus 15 ~~dvl~c~~-GLs~~Dv~v~~~LL~-~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Re 75 (126)
T COG3355 15 CEDVLKCVY-GLSELDVEVYKALLE-ENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVERE 75 (126)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHh-hcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeee
Confidence 445555444 566655555544332 33 34778888877655 999999999999976
No 251
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=20.68 E-value=2.3e+02 Score=21.28 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=34.8
Q ss_pred EEEeccccccccchHHHHHHHHHhCCcceeecc--------cc-----ccCCCCccHHHHHHhhhcCeEEeeecc
Q 045634 18 VFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDD--------EE-----LEKGDEISPALFIAVETSDISVIILSK 79 (353)
Q Consensus 18 vFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~--------~~-----~~~g~~~~~~i~~~i~~s~~~i~v~S~ 79 (353)
||+|....| +.-...+...|...|++.|--. .. +.+...-.++|.+.|++-++.+++..+
T Consensus 3 vl~s~~~~~--k~~~~~~~~~l~~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~ 75 (110)
T cd01424 3 VFISVADRD--KPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTP 75 (110)
T ss_pred EEEEEEcCc--HhHHHHHHHHHHHCCCEEEEchHHHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECC
Confidence 789988776 3355577788888888876432 00 101001125566666666666665544
No 252
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=20.66 E-value=3.1e+02 Score=20.71 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=37.4
Q ss_pred EEEeccccccccchHHHHHHHHHhCCcceeeccc-------------cccCCCC-ccHHHHHHhhh-cCeEEeeeccC
Q 045634 18 VFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDE-------------ELEKGDE-ISPALFIAVET-SDISVIILSKD 80 (353)
Q Consensus 18 vFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~-------------~~~~g~~-~~~~i~~~i~~-s~~~i~v~S~~ 80 (353)
||||-+..| +.-+..+...|...|++.+--.. .+.++.. -.+++.+.|++ -++.+++..++
T Consensus 2 i~isv~d~~--K~~~~~~a~~l~~~G~~i~AT~gTa~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 2 VFLSVSDHV--KAMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred EEEEEEccc--HHHHHHHHHHHHHCCCEEEECcHHHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCC
Confidence 688876666 33455777777788887764320 1111111 12667888888 88887777664
No 253
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=20.62 E-value=2.8e+02 Score=27.64 Aligned_cols=47 Identities=26% Similarity=0.419 Sum_probs=31.6
Q ss_pred HHHHHhcCceeeEeccccc--hHHHHHHHHhhcC-CCCCcEEEEEeCccccc
Q 045634 162 IKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ-FSGRSRIIITSRDKGVL 210 (353)
Q Consensus 162 l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~ 210 (353)
+....-.++-|||||.--+ +.+.+++|...+. +..| ||+.|-+....
T Consensus 493 fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GG--Vv~VSHd~~fi 542 (582)
T KOG0062|consen 493 FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGG--VVLVSHDEEFI 542 (582)
T ss_pred HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCc--EEEEECcHHHH
Confidence 3344445788999998876 5777888888887 5544 55556565543
No 254
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.41 E-value=1.6e+02 Score=25.12 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=31.7
Q ss_pred HHHHHHhcCceeeEeccccc--hHHHHHHHHhhcC--CCCCcEEEEEeCcccccccc
Q 045634 161 RIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ--FSGRSRIIITSRDKGVLDKC 213 (353)
Q Consensus 161 ~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~--~~~gs~IivTTR~~~v~~~~ 213 (353)
.+-..+-.+.=+++||..-. +....+.+...+. ...|..||++|.+...+...
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 203 (214)
T PRK13543 147 ALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPV 203 (214)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhh
Confidence 45555556777899998865 2333333333332 23456788899887655443
No 255
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=20.19 E-value=2.2e+02 Score=27.15 Aligned_cols=59 Identities=22% Similarity=0.183 Sum_probs=37.3
Q ss_pred ceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeec
Q 045634 15 KYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILS 78 (353)
Q Consensus 15 ~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S 78 (353)
.++|+|-.-+++. ...+..+...|+++|+++.+|. .+.++...+..+-+.--..++++.
T Consensus 274 P~qV~IIpl~eel-~e~AlkLA~eLR~aGIrVeiDl----~srSLgKQiK~AdK~GaPfvIIIG 332 (387)
T PRK14938 274 PIQVRILPVKKDF-LDFSIQVAERLRKEGIRVNVDD----LDDSLGNKIRRAGTEWIPFVIIIG 332 (387)
T ss_pred cceEEEEEeChHH-HHHHHHHHHHHHHCCCEEEEEC----CCCCHHHHHHHHHHcCCCEEEEEC
Confidence 5677655545443 3477889999999999999876 245666666665433333344444
No 256
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=20.17 E-value=1.1e+02 Score=30.86 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=16.7
Q ss_pred CcEEEeEEeecCCccccccccccc
Q 045634 102 GKIVIPVFYQVDPSDVRKQRRSFG 125 (353)
Q Consensus 102 ~~~vipI~ggVgkt~~~~~~~~f~ 125 (353)
+..-||...|+|||.+..+..++.
T Consensus 228 q~~~Ipg~~G~GKTvl~~~iak~a 251 (586)
T PRK04192 228 GTAAIPGPFGSGKTVTQHQLAKWA 251 (586)
T ss_pred CeEEEecCCCCCHHHHHHHHHhcC
Confidence 344566666999997777766655
No 257
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=20.14 E-value=1.5e+02 Score=25.56 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=21.4
Q ss_pred ceeeEeccccc-hHHHHHHHHhhcCCCCCcEEEEEeCcc
Q 045634 170 KVLIVLDDVHD-EFTELKSLARRLQFSGRSRIIITSRDK 207 (353)
Q Consensus 170 r~LlVLDdv~~-~~~~~~~l~~~~~~~~gs~IivTTR~~ 207 (353)
..++|+|.+-+ ...++..+... .+.|||+|++--..
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR--~g~~skii~~GD~~ 156 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTR--IGEGSKIIITGDPS 156 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTT--B-TT-EEEEEE---
T ss_pred ceEEEEecccCCCHHHHHHHHcc--cCCCcEEEEecCce
Confidence 56899999987 34555555433 68999999987544
No 258
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=20.12 E-value=3.3e+02 Score=19.25 Aligned_cols=42 Identities=14% Similarity=0.040 Sum_probs=31.7
Q ss_pred HHHHHhhhhccCCC--CCHHHHHHHHhcC-----chHHHHhhCCCcEee
Q 045634 299 EKKTFLDIACFFTG--EDIDFVRRIRDDP-----SSLDTFVDKSLITIF 340 (353)
Q Consensus 299 ~k~~fl~la~fp~~--~~~~~l~~~w~~~-----~~l~~L~~~sLl~~~ 340 (353)
.-+++.+++..+++ .+.+.+....... ..++.|...++|...
T Consensus 10 Al~~l~~la~~~~~~~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~ 58 (83)
T PF02082_consen 10 ALRILLYLARHPDGKPVSSKEIAERLGISPSYLRKILQKLKKAGLIESS 58 (83)
T ss_dssp HHHHHHHHHCTTTSC-BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEec
Confidence 45678888888764 4667777666554 899999999999976
Done!