Query 045634
Match_columns 353
No_of_seqs 337 out of 2786
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 06:25:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 2E-42 7E-47 291.4 7.3 154 6-159 26-181 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 2.6E-41 8.9E-46 280.4 6.3 148 10-157 3-151 (176)
3 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-35 4.8E-40 293.4 15.6 262 83-353 132-463 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 2E-30 6.7E-35 278.6 23.1 268 75-353 120-444 (1249)
5 1vt4_I APAF-1 related killer D 100.0 1.6E-30 5.5E-35 264.6 13.7 257 78-352 127-434 (1221)
6 3h16_A TIR protein; bacteria T 100.0 1.2E-30 4.2E-35 215.0 9.5 123 10-133 15-137 (154)
7 1z6t_A APAF-1, apoptotic prote 100.0 3.5E-27 1.2E-31 235.4 21.3 267 75-353 120-444 (591)
8 3ub2_A TOLL/interleukin-1 rece 99.9 2E-25 6.8E-30 181.4 2.5 110 8-119 3-114 (146)
9 1fyx_A TOLL-like receptor 2; b 99.9 6.5E-23 2.2E-27 167.5 4.3 102 12-115 2-108 (149)
10 2j67_A TOLL like receptor 10; 99.9 1.8E-22 6.3E-27 169.1 5.4 103 10-114 30-137 (178)
11 2js7_A Myeloid differentiation 99.9 2.2E-22 7.5E-27 166.1 4.3 102 9-112 10-115 (160)
12 1t3g_A X-linked interleukin-1 99.8 1.1E-21 3.7E-26 161.8 6.2 97 14-110 1-110 (159)
13 3j0a_A TOLL-like receptor 5; m 99.5 3.8E-15 1.3E-19 154.3 7.1 99 11-111 666-771 (844)
14 2qen_A Walker-type ATPase; unk 99.1 2.3E-09 7.8E-14 98.9 14.7 179 169-352 128-346 (350)
15 2fna_A Conserved hypothetical 98.9 1.5E-08 5E-13 93.7 13.4 177 169-352 137-354 (357)
16 1w5s_A Origin recognition comp 98.9 2.9E-08 9.8E-13 93.8 15.5 268 81-350 24-387 (412)
17 2qby_B CDC6 homolog 3, cell di 98.5 2.8E-06 9.6E-11 79.3 14.8 263 81-349 22-354 (384)
18 2qby_A CDC6 homolog 1, cell di 98.3 6.3E-06 2.1E-10 76.6 12.7 268 81-349 22-363 (386)
19 2v1u_A Cell division control p 98.3 9.7E-06 3.3E-10 75.4 13.9 265 81-349 21-366 (387)
20 1fnn_A CDC6P, cell division co 98.1 4.7E-05 1.6E-09 70.9 15.4 259 82-340 20-351 (389)
21 1njg_A DNA polymerase III subu 98.1 5.5E-05 1.9E-09 65.0 14.5 102 168-271 125-230 (250)
22 2chg_A Replication factor C sm 97.8 0.00035 1.2E-08 59.1 14.1 99 168-268 101-203 (226)
23 1hqc_A RUVB; extended AAA-ATPa 97.4 0.0051 1.7E-07 55.5 16.2 170 169-340 90-298 (324)
24 1eiw_A Hypothetical protein MT 97.3 0.00031 1.1E-08 53.2 5.6 73 14-110 3-75 (111)
25 1sxj_B Activator 1 37 kDa subu 97.1 0.0032 1.1E-07 56.6 11.3 101 168-270 106-211 (323)
26 3pfi_A Holliday junction ATP-d 96.6 0.057 2E-06 48.9 14.8 173 169-343 106-317 (338)
27 1iqp_A RFCS; clamp loader, ext 96.5 0.014 4.8E-07 52.4 10.6 99 168-268 109-211 (327)
28 3hyn_A Putative signal transdu 96.0 0.028 9.6E-07 45.8 8.2 89 15-109 5-116 (189)
29 2chq_A Replication factor C sm 96.0 0.027 9.2E-07 50.4 9.1 98 168-267 101-202 (319)
30 1sxj_D Activator 1 41 kDa subu 94.2 0.33 1.1E-05 43.8 10.8 97 169-267 133-233 (353)
31 2z4s_A Chromosomal replication 93.5 0.19 6.5E-06 47.5 8.0 102 162-266 187-303 (440)
32 1jr3_A DNA polymerase III subu 93.4 0.43 1.5E-05 43.4 10.1 100 168-269 118-221 (373)
33 1a5t_A Delta prime, HOLB; zinc 91.3 1.3 4.3E-05 40.0 10.3 94 168-268 107-204 (334)
34 3u61_B DNA polymerase accessor 91.2 1.2 4E-05 39.8 10.0 95 169-264 105-211 (324)
35 3pvs_A Replication-associated 90.9 1.2 4E-05 42.2 10.0 149 105-267 52-213 (447)
36 1sxj_A Activator 1 95 kDa subu 90.8 1.3 4.4E-05 42.7 10.3 99 168-269 147-253 (516)
37 1d2n_A N-ethylmaleimide-sensit 90.0 1.6 5.5E-05 37.8 9.5 87 167-261 122-229 (272)
38 1l8q_A Chromosomal replication 89.7 1.1 3.8E-05 40.0 8.4 90 169-263 98-202 (324)
39 1sxj_E Activator 1 40 kDa subu 88.3 2.4 8.2E-05 38.1 9.6 101 167-269 132-237 (354)
40 2gno_A DNA polymerase III, gam 87.9 1.5 5.1E-05 39.1 7.8 68 169-237 82-152 (305)
41 3bos_A Putative DNA replicatio 87.1 0.6 2.1E-05 39.3 4.6 99 168-268 103-216 (242)
42 3te6_A Regulatory protein SIR3 82.6 13 0.00045 33.1 11.4 70 168-238 131-212 (318)
43 1in4_A RUVB, holliday junction 79.2 34 0.0012 30.4 14.7 126 217-344 173-315 (334)
44 2zan_A Vacuolar protein sortin 77.9 31 0.0011 32.2 12.8 102 167-271 225-347 (444)
45 3n70_A Transport activator; si 77.1 2.1 7.1E-05 33.2 3.7 37 170-206 77-115 (145)
46 3ec2_A DNA replication protein 76.7 1.9 6.5E-05 34.7 3.6 39 169-207 100-143 (180)
47 1jr3_D DNA polymerase III, del 75.4 9.8 0.00034 34.0 8.3 98 168-267 75-183 (343)
48 4fcw_A Chaperone protein CLPB; 75.0 9.7 0.00033 33.2 8.1 31 162-192 111-143 (311)
49 2qz4_A Paraplegin; AAA+, SPG7, 75.0 36 0.0012 28.5 11.8 100 167-268 96-221 (262)
50 3h4m_A Proteasome-activating n 72.0 34 0.0012 29.2 10.8 99 167-270 108-232 (285)
51 1jbk_A CLPB protein; beta barr 70.5 2.5 8.6E-05 33.6 2.8 63 168-232 114-193 (195)
52 3cf0_A Transitional endoplasmi 66.2 65 0.0022 27.9 11.8 93 167-264 106-223 (301)
53 3co5_A Putative two-component 64.1 19 0.00064 27.5 6.7 37 170-206 76-115 (143)
54 1sxj_C Activator 1 40 kDa subu 61.9 47 0.0016 29.3 9.9 95 169-265 110-208 (340)
55 3uk6_A RUVB-like 2; hexameric 61.5 35 0.0012 30.4 9.0 96 171-268 191-302 (368)
56 3d8b_A Fidgetin-like protein 1 57.7 94 0.0032 27.7 11.2 101 168-271 175-297 (357)
57 3syl_A Protein CBBX; photosynt 57.5 31 0.0011 29.9 7.7 68 169-238 130-218 (309)
58 1v95_A Nuclear receptor coacti 53.8 47 0.0016 25.3 7.0 52 12-67 5-57 (130)
59 2c9o_A RUVB-like 1; hexameric 49.7 82 0.0028 29.2 9.7 94 172-268 298-409 (456)
60 2yvq_A Carbamoyl-phosphate syn 48.7 32 0.0011 26.5 5.6 62 18-81 27-106 (143)
61 1g5t_A COB(I)alamin adenosyltr 47.9 13 0.00044 30.7 3.2 48 161-208 111-164 (196)
62 3eie_A Vacuolar protein sortin 45.8 1.5E+02 0.0052 25.8 12.4 100 168-270 109-229 (322)
63 4aby_A DNA repair protein RECN 42.1 52 0.0018 30.0 6.8 55 165-221 309-368 (415)
64 3vfd_A Spastin; ATPase, microt 40.9 2E+02 0.0068 25.8 12.2 101 168-271 206-328 (389)
65 2jug_A TUBC protein; docking d 40.7 24 0.00082 24.0 3.3 40 32-71 7-49 (78)
66 4b4t_J 26S protease regulatory 35.9 1.7E+02 0.0058 26.9 9.1 91 168-262 240-354 (405)
67 1xwi_A SKD1 protein; VPS4B, AA 35.8 2.2E+02 0.0075 24.8 12.7 101 168-271 104-225 (322)
68 2qp9_X Vacuolar protein sortin 33.2 2.6E+02 0.0088 24.8 12.7 102 167-271 141-263 (355)
69 3t15_A Ribulose bisphosphate c 33.1 85 0.0029 27.1 6.4 41 196-238 154-199 (293)
70 3b9p_A CG5977-PA, isoform A; A 28.9 2.6E+02 0.009 23.5 11.0 102 167-271 111-235 (297)
71 3i71_A Ethanolamine utilizatio 28.2 1.2E+02 0.0041 19.4 5.6 50 300-349 6-60 (68)
72 1qvr_A CLPB protein; coiled co 27.8 37 0.0013 34.7 3.5 24 170-193 661-685 (854)
73 4b4t_K 26S protease regulatory 27.6 1.8E+02 0.0062 26.9 7.9 90 168-261 264-378 (428)
74 4b4t_M 26S protease regulatory 27.2 3.1E+02 0.01 25.4 9.4 90 168-261 273-386 (434)
75 3fkq_A NTRC-like two-domain pr 27.0 54 0.0019 29.6 4.2 17 101-117 141-160 (373)
76 3pxg_A Negative regulator of g 26.6 1E+02 0.0036 28.7 6.2 67 167-237 265-338 (468)
77 1evl_A Threonyl-tRNA synthetas 25.3 1.3E+02 0.0045 27.3 6.5 47 15-66 298-344 (401)
78 3net_A Histidyl-tRNA synthetas 23.5 1.1E+02 0.0039 28.5 5.8 62 14-80 370-431 (465)
79 2f62_A Nucleoside 2-deoxyribos 23.2 2.2E+02 0.0076 22.2 6.6 68 30-97 27-97 (161)
80 1wu7_A Histidyl-tRNA synthetas 22.9 1.6E+02 0.0054 27.1 6.6 56 15-75 332-388 (434)
81 3hu3_A Transitional endoplasmi 22.9 4.7E+02 0.016 24.4 10.3 101 166-270 294-416 (489)
82 2i4l_A Proline-tRNA ligase; al 22.7 1E+02 0.0035 28.7 5.3 60 15-79 365-427 (458)
83 3hjn_A DTMP kinase, thymidylat 22.5 74 0.0025 25.7 3.8 48 19-68 2-51 (197)
84 2d2e_A SUFC protein; ABC-ATPas 22.2 1.9E+02 0.0064 24.2 6.5 62 160-221 152-217 (250)
85 3e97_A Transcriptional regulat 21.4 1.7E+02 0.0057 23.6 5.9 41 309-349 172-217 (231)
86 2oz6_A Virulence factor regula 21.0 1.3E+02 0.0046 23.6 5.1 37 313-349 165-206 (207)
87 3lc0_A Histidyl-tRNA synthetas 20.3 1.8E+02 0.0061 27.1 6.4 62 14-80 360-421 (456)
88 3auy_A DNA double-strand break 20.1 1.9E+02 0.0064 25.8 6.4 56 164-221 299-358 (371)
89 2xij_A Methylmalonyl-COA mutas 20.1 4.7E+02 0.016 26.2 9.5 96 14-116 603-698 (762)
90 3d0s_A Transcriptional regulat 20.0 2.1E+02 0.0072 22.9 6.3 41 309-349 174-219 (227)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2e-42 Score=291.41 Aligned_cols=154 Identities=45% Similarity=0.774 Sum_probs=138.5
Q ss_pred CCCCCCCCCceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccch
Q 045634 6 SSSSLTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSK 85 (353)
Q Consensus 6 ~~~~~~~~~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~ 85 (353)
+||++.+.++|||||||+|+|++++|+.||+.+|+++||++|+|++++.+|+.|.++|.++|++|+++|+|||++|++|.
T Consensus 26 ~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~ 105 (204)
T 3ozi_A 26 NPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSK 105 (204)
T ss_dssp --------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCH
T ss_pred CCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCc
Confidence 34556788999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred hhHhhhhhhhhccc-cCCcEEEeEEeecCCcccccccccccccceecccCCc-hHHHHHHHHHHhhccCCCCCchH
Q 045634 86 WCLNELVNILDCKK-MNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHENNFP-DKVQKWRDALTEASNLSGYDSTE 159 (353)
Q Consensus 86 ~~~~El~~~~~~~~-~~~~~vipI~ggVgkt~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~ 159 (353)
||++||+++++|.+ ..+++||||||+|+|+++++|+|.|+++|..+...+. +++++|+.||.+++++.|++...
T Consensus 106 WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~ 181 (204)
T 3ozi_A 106 WCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGK 181 (204)
T ss_dssp HHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECT
T ss_pred HHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCC
Confidence 99999999999985 4678999999999999999999999999999987765 67999999999999999987643
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2.6e-41 Score=280.42 Aligned_cols=148 Identities=47% Similarity=0.776 Sum_probs=124.3
Q ss_pred CCCCCceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccchhhHh
Q 045634 10 LTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLN 89 (353)
Q Consensus 10 ~~~~~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~ 89 (353)
++.+++|||||||+|+|++++|++||+.+|+++||++|+|++++.+|+.|.++|.++|++|+++|+|||+||++|.||++
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 34679999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred hhhhhhhccccCCcEEEeEEeecCCcccccccccccccceecccCC-chHHHHHHHHHHhhccCCCCCc
Q 045634 90 ELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHENNF-PDKVQKWRDALTEASNLSGYDS 157 (353)
Q Consensus 90 El~~~~~~~~~~~~~vipI~ggVgkt~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 157 (353)
||+++++|.+..+.+|+||||+|+|+++++|+|.|+++|..+.... .+++++|+.||+++++++|++.
T Consensus 83 EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~ 151 (176)
T 3jrn_A 83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCS 151 (176)
T ss_dssp HHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEEC
T ss_pred HHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceec
Confidence 9999999998888999999999999999999999999999987653 3789999999999999999875
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-35 Score=293.43 Aligned_cols=262 Identities=13% Similarity=0.147 Sum_probs=198.4
Q ss_pred cchhhHhhhhhhhhccccCCcEEEeEEe--ecCCcccc---------ccccccc-ccceecccCC-chHHHHHHHHHHhh
Q 045634 83 SSKWCLNELVNILDCKKMNGKIVIPVFY--QVDPSDVR---------KQRRSFG-EAFVHHENNF-PDKVQKWRDALTEA 149 (353)
Q Consensus 83 ~s~~~~~El~~~~~~~~~~~~~vipI~g--gVgkt~~~---------~~~~~f~-~~~~~~~~~~-~~~~~~~~~~l~~~ 149 (353)
+..--++++..++......+..+++|+| |||||.+. +...+|+ ..|+.+.... .+....+++++.++
T Consensus 132 GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l 211 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLML 211 (549)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 6666778888877654445678999999 99999432 3456787 5566554332 14566677777766
Q ss_pred ccCC------CCCch-----HHHHHHHHhcC-ceeeEeccccchHHHHHHHHhhcCCCCCcEEEEEeCccccccccC-cc
Q 045634 150 SNLS------GYDST-----ESRIKKRLQLM-KVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLDKCG-VN 216 (353)
Q Consensus 150 ~~~~------g~~~~-----~~~l~~~L~~k-r~LlVLDdv~~~~~~~~~l~~~~~~~~gs~IivTTR~~~v~~~~~-~~ 216 (353)
.... ..+.. ...+++.|+++ |+||||||||+ ..++ .+. ..+||+||||||++.++..++ ..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~-~~~~-~~~----~~~gs~ilvTTR~~~v~~~~~~~~ 285 (549)
T 2a5y_B 212 KSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ-EETI-RWA----QELRLRCLVTTRDVEISNAASQTC 285 (549)
T ss_dssp TTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC-HHHH-HHH----HHTTCEEEEEESBGGGGGGCCSCE
T ss_pred hcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCC-chhh-ccc----ccCCCEEEEEcCCHHHHHHcCCCC
Confidence 5431 11111 37889999996 99999999999 6655 222 137999999999999998775 44
Q ss_pred ceEEeCCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhc-ccccc------c----cCCCchHH
Q 045634 217 NMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANN-NGKLM------K----LISEPNIY 285 (353)
Q Consensus 217 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~-~~~~l------~----~~~~~~v~ 285 (353)
..|+|++|+.++|++||.+.+|+... .+++.+++++|+++|+|+||||+++|+. ....| . ......+.
T Consensus 286 ~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~ 364 (549)
T 2a5y_B 286 EFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVE 364 (549)
T ss_dssp EEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTC
T ss_pred eEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHH
Confidence 68999999999999999999976543 3578889999999999999999999988 11111 1 11345577
Q ss_pred HHHHhhhccCCHhHHHHHh-----------hhhccCCCCCHHHHHHHHhcC------------------chHHHHhhCCC
Q 045634 286 NVLKISYDELNLEEKKTFL-----------DIACFFTGEDIDFVRRIRDDP------------------SSLDTFVDKSL 336 (353)
Q Consensus 286 ~~l~~sy~~L~~~~k~~fl-----------~la~fp~~~~~~~l~~~w~~~------------------~~l~~L~~~sL 336 (353)
.+|.+||+.||++.|.||+ |||+||++++++ +.+|.++ .+|++|+++||
T Consensus 365 ~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsL 442 (549)
T 2a5y_B 365 CITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGA 442 (549)
T ss_dssp CCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSS
T ss_pred HHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCC
Confidence 8899999999999999999 999999998766 5667552 57999999999
Q ss_pred cEee-C---CeEEechhhhhC
Q 045634 337 ITIF-Y---NELQMHDLLQEM 353 (353)
Q Consensus 337 l~~~-~---~~~~mHdlv~d~ 353 (353)
|+.. . .+|+|||||||+
T Consensus 443 l~~~~~~~~~~~~mHdlv~~~ 463 (549)
T 2a5y_B 443 LLSGKRMPVLTFKIDHIIHMF 463 (549)
T ss_dssp CSEEECSSSCEEECCHHHHHH
T ss_pred eeEecCCCceEEEeChHHHHH
Confidence 9986 2 469999999985
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=2e-30 Score=278.57 Aligned_cols=268 Identities=18% Similarity=0.212 Sum_probs=196.4
Q ss_pred eeeccCcccchhhHhhhhhhhhccccCCcEEEeEEe--ecCCcccccc--------ccccc-ccceecccCC-c-hHHHH
Q 045634 75 IILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFY--QVDPSDVRKQ--------RRSFG-EAFVHHENNF-P-DKVQK 141 (353)
Q Consensus 75 ~v~S~~~~~s~~~~~El~~~~~~~~~~~~~vipI~g--gVgkt~~~~~--------~~~f~-~~~~~~~~~~-~-~~~~~ 141 (353)
..-.+.|++..--+++|...+... ..+.++++|+| |||||.+..+ ...|. ..||...... . .....
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~-~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKL-NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTT-TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhc-cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 334456788877788888877543 24567899999 9999965532 23354 5544443332 2 33444
Q ss_pred HHHHHHhhccCCC----CCchH----HHHHHHHhcC--ceeeEeccccchHHHHHHHHhhcCCCCCcEEEEEeCcccccc
Q 045634 142 WRDALTEASNLSG----YDSTE----SRIKKRLQLM--KVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLD 211 (353)
Q Consensus 142 ~~~~l~~~~~~~g----~~~~~----~~l~~~L~~k--r~LlVLDdv~~~~~~~~~l~~~~~~~~gs~IivTTR~~~v~~ 211 (353)
+...+..+..... ..... +.++..+.++ |+||||||||+ ..+|+. .++||+||||||++.++.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~-~~~~~~------~~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-PWVLKA------FDNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC-HHHHTT------TCSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC-HHHHHh------hcCCCEEEEEcCCHHHHH
Confidence 4444444432211 11112 4566666666 99999999999 766544 478999999999999985
Q ss_pred c-cCccceEEeCC-CChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhc----------cccccccC
Q 045634 212 K-CGVNNMYEVKG-LKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANN----------NGKLMKLI 279 (353)
Q Consensus 212 ~-~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~----------~~~~l~~~ 279 (353)
. ++....+++++ |+.+||++||...++.. .+.+.+.+++|+++|+|+||||+++|++ .+..+...
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNK 348 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSC
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhh
Confidence 4 45667899996 99999999999988432 2345567999999999999999999998 11122111
Q ss_pred C-----------CchHHHHHHhhhccCCHhHHHHHhhhhccCCCC--CHHHHHHHHhcC-----chHHHHhhCCCcEee-
Q 045634 280 S-----------EPNIYNVLKISYDELNLEEKKTFLDIACFFTGE--DIDFVRRIRDDP-----SSLDTFVDKSLITIF- 340 (353)
Q Consensus 280 ~-----------~~~v~~~l~~sy~~L~~~~k~~fl~la~fp~~~--~~~~l~~~w~~~-----~~l~~L~~~sLl~~~- 340 (353)
. ...+..+|.+||+.||+++|.||++||+||+++ +.+.++.+|.++ .+|++|+++|||+..
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~ 428 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNR 428 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEec
Confidence 1 145899999999999999999999999999986 668899999876 899999999999987
Q ss_pred CCe---EEechhhhhC
Q 045634 341 YNE---LQMHDLLQEM 353 (353)
Q Consensus 341 ~~~---~~mHdlv~d~ 353 (353)
+++ |+||+|||++
T Consensus 429 ~~~~~~~~~h~l~~~~ 444 (1249)
T 3sfz_A 429 NGKSFCYYLHDLQVDF 444 (1249)
T ss_dssp SSSSEEEECCHHHHHH
T ss_pred CCCceEEEecHHHHHH
Confidence 554 9999999974
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=1.6e-30 Score=264.60 Aligned_cols=257 Identities=16% Similarity=0.136 Sum_probs=184.0
Q ss_pred ccCcccchhhHhhhhhhhhccccCCcEEEeEEe--ecCCcccccc-------ccccc-ccceecccCCchH---HHHHHH
Q 045634 78 SKDYASSKWCLNELVNILDCKKMNGKIVIPVFY--QVDPSDVRKQ-------RRSFG-EAFVHHENNFPDK---VQKWRD 144 (353)
Q Consensus 78 S~~~~~s~~~~~El~~~~~~~~~~~~~vipI~g--gVgkt~~~~~-------~~~f~-~~~~~~~~~~~~~---~~~~~~ 144 (353)
++-++...--+++|...+... .+.++++|+| |+|||.+..+ ...|. ..+|......++. ...+.+
T Consensus 127 tk~~VGRe~eLeeL~elL~~~--d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 127 AKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCSCCCCHHHHHHHHHHHHHC--CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHhcc--CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 333466666677777776542 2357899999 9999965442 35676 3444433333333 233333
Q ss_pred HHHhhccC--CCCC----c--h----HHHHHHHH---hcCceeeEeccccchHHHHHHHHhhcCCCCCcEEEEEeCcccc
Q 045634 145 ALTEASNL--SGYD----S--T----ESRIKKRL---QLMKVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGV 209 (353)
Q Consensus 145 ~l~~~~~~--~g~~----~--~----~~~l~~~L---~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~gs~IivTTR~~~v 209 (353)
.+..+... ...+ . . .+.+++.| .+||+||||||||+ ..+|+.+ ++||+||||||++.+
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd-~eqLe~f------~pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAF------NLSCKILLTTRFKQV 277 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC-HHHHHHH------HSSCCEEEECSCSHH
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh-HHHHHhh------CCCeEEEEeccChHH
Confidence 33333211 0011 1 1 24566655 57999999999999 8888875 268999999999998
Q ss_pred ccccCccceEEeC------CCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhc------cccccc
Q 045634 210 LDKCGVNNMYEVK------GLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANN------NGKLMK 277 (353)
Q Consensus 210 ~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~------~~~~l~ 277 (353)
+..+.....|+++ +|+.+||++||++.. +.. ..++..++ |+|+||||+++|+. ....|+
T Consensus 278 a~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHh
Confidence 8654444467777 999999999999984 322 22333443 99999999999998 223455
Q ss_pred cCCCchHHHHHHhhhccCCHhH-HHHHhhhhccCCCC--CHHHHHHHHhcC------chHHHHhhCCCcEee--CCeEEe
Q 045634 278 LISEPNIYNVLKISYDELNLEE-KKTFLDIACFFTGE--DIDFVRRIRDDP------SSLDTFVDKSLITIF--YNELQM 346 (353)
Q Consensus 278 ~~~~~~v~~~l~~sy~~L~~~~-k~~fl~la~fp~~~--~~~~l~~~w~~~------~~l~~L~~~sLl~~~--~~~~~m 346 (353)
......+..+|++||+.||++. |.||++||+||+++ +.+.++.+|.++ .+|++|+++|||+.. .++|+|
T Consensus 349 ~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrM 428 (1221)
T 1vt4_I 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428 (1221)
T ss_dssp HCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBC
T ss_pred cCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEe
Confidence 5556789999999999999999 99999999999987 457799999865 799999999999986 568999
Q ss_pred chhhhh
Q 045634 347 HDLLQE 352 (353)
Q Consensus 347 Hdlv~d 352 (353)
|||+++
T Consensus 429 HDLllE 434 (1221)
T 1vt4_I 429 PSIYLE 434 (1221)
T ss_dssp CCHHHH
T ss_pred hHHHHH
Confidence 999876
No 6
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.97 E-value=1.2e-30 Score=215.04 Aligned_cols=123 Identities=20% Similarity=0.388 Sum_probs=113.3
Q ss_pred CCCCCceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccchhhHh
Q 045634 10 LTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLN 89 (353)
Q Consensus 10 ~~~~~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~ 89 (353)
..+.++|||||||+++| ++.|+.+|+.+|+++|+++|+|++++.+|+.+.++|.++|++|+++|+++|++|+.|.||++
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 35679999999999999 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccCCcEEEeEEeecCCcccccccccccccceeccc
Q 045634 90 ELVNILDCKKMNGKIVIPVFYQVDPSDVRKQRRSFGEAFVHHEN 133 (353)
Q Consensus 90 El~~~~~~~~~~~~~vipI~ggVgkt~~~~~~~~f~~~~~~~~~ 133 (353)
|+..++.+....+.+|+||||+|.|++++++.|.|+.+|.....
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~ 137 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS 137 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC
Confidence 99999998777778899999999999999999999988877653
No 7
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.95 E-value=3.5e-27 Score=235.44 Aligned_cols=267 Identities=19% Similarity=0.216 Sum_probs=189.2
Q ss_pred eeeccCcccchhhHhhhhhhhhccccCCcEEEeEEe--ecCCcccccc--------ccccc-ccceecccCCc--hHHHH
Q 045634 75 IILSKDYASSKWCLNELVNILDCKKMNGKIVIPVFY--QVDPSDVRKQ--------RRSFG-EAFVHHENNFP--DKVQK 141 (353)
Q Consensus 75 ~v~S~~~~~s~~~~~El~~~~~~~~~~~~~vipI~g--gVgkt~~~~~--------~~~f~-~~~~~~~~~~~--~~~~~ 141 (353)
....+.+++..--+++|...+... ..+.+++.|.| |+|||.+... .+.|. ..+|......+ .....
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL-KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS-TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcc-cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHH
Confidence 344556788877788888777643 23467889999 9999954322 45564 34443332322 22333
Q ss_pred HHHHHHhhcc------CCCCC--chHHHHHHHHhc--CceeeEeccccchHHHHHHHHhhcCCCCCcEEEEEeCcccccc
Q 045634 142 WRDALTEASN------LSGYD--STESRIKKRLQL--MKVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGVLD 211 (353)
Q Consensus 142 ~~~~l~~~~~------~~g~~--~~~~~l~~~L~~--kr~LlVLDdv~~~~~~~~~l~~~~~~~~gs~IivTTR~~~v~~ 211 (353)
+......+.. ..... .....++..+.+ +++||||||+|+ ...++. .++|++||||||++.++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~-~~~l~~------l~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD-SWVLKA------FDSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC-HHHHHT------TCSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC-HHHHHH------hcCCCeEEEECCCcHHHH
Confidence 3333333221 01111 112567777776 789999999999 655543 367899999999999876
Q ss_pred ccCccceEEe---CCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhc---c-------cccccc
Q 045634 212 KCGVNNMYEV---KGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANN---N-------GKLMKL 278 (353)
Q Consensus 212 ~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~---~-------~~~l~~ 278 (353)
.++ ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||+++|++ . +..+..
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~ 347 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQN 347 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHS
T ss_pred hcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 653 345665 4899999999999988542 2233467899999999999999999988 1 111111
Q ss_pred C-----------CCchHHHHHHhhhccCCHhHHHHHhhhhccCCCC--CHHHHHHHHhcC-----chHHHHhhCCCcEee
Q 045634 279 I-----------SEPNIYNVLKISYDELNLEEKKTFLDIACFFTGE--DIDFVRRIRDDP-----SSLDTFVDKSLITIF 340 (353)
Q Consensus 279 ~-----------~~~~v~~~l~~sy~~L~~~~k~~fl~la~fp~~~--~~~~l~~~w~~~-----~~l~~L~~~sLl~~~ 340 (353)
. ....+..++..||+.||++.|.||++||+||++. +.+.+..+|... .+++.|+++|||...
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~ 427 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCD 427 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEE
T ss_pred hHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEe
Confidence 1 1247899999999999999999999999999875 567888999876 789999999999976
Q ss_pred -C---CeEEechhhhhC
Q 045634 341 -Y---NELQMHDLLQEM 353 (353)
Q Consensus 341 -~---~~~~mHdlv~d~ 353 (353)
+ .+|+||+|+|++
T Consensus 428 ~~~~~~~~~~H~lv~~~ 444 (591)
T 1z6t_A 428 RNGKSFRYYLHDLQVDF 444 (591)
T ss_dssp EETTEEEEECCHHHHHH
T ss_pred cCCCccEEEEcHHHHHH
Confidence 2 269999999874
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.90 E-value=2e-25 Score=181.38 Aligned_cols=110 Identities=17% Similarity=0.298 Sum_probs=81.4
Q ss_pred CCCCCCCceeEEEeccccccccchHHHHHHHHHh--CCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccch
Q 045634 8 SSLTGHSKYKVFLSFRGEDTRNGFTSHLAAALHR--KQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSK 85 (353)
Q Consensus 8 ~~~~~~~~~dvFiSy~~~D~~~~f~~~l~~~L~~--~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~ 85 (353)
.|....+.|||||||+++|+ .|+.+|+.+|++ .|+++|+|++++.||+.+.++|.++|++|+++|+|+|++|+.|.
T Consensus 3 ~~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~ 80 (146)
T 3ub2_A 3 GSSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP 80 (146)
T ss_dssp -CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCH
T ss_pred CCCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCH
Confidence 34567789999999999995 489999999998 59999999999999999999999999999999999999999999
Q ss_pred hhHhhhhhhhhccccCCcEEEeEEeecCCccccc
Q 045634 86 WCLNELVNILDCKKMNGKIVIPVFYQVDPSDVRK 119 (353)
Q Consensus 86 ~~~~El~~~~~~~~~~~~~vipI~ggVgkt~~~~ 119 (353)
||..|+..++.+......+||||+++|.+..+..
T Consensus 81 wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~ 114 (146)
T 3ub2_A 81 WCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPP 114 (146)
T ss_dssp HHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCG
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCH
Confidence 9999999999877333447889999987665443
No 9
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.86 E-value=6.5e-23 Score=167.52 Aligned_cols=102 Identities=18% Similarity=0.318 Sum_probs=91.7
Q ss_pred CCCceeEEEeccccccccchHHH-HHHHHHhC--CcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccchhhH
Q 045634 12 GHSKYKVFLSFRGEDTRNGFTSH-LAAALHRK--QIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCL 88 (353)
Q Consensus 12 ~~~~~dvFiSy~~~D~~~~f~~~-l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~ 88 (353)
.++.|||||||+++|. .|+.+ |+.+|+++ |+++|+|++++.||+.+.++|.++|++|+++|+|+|++|+.|.||.
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4678999999999995 69997 99999987 9999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcc-ccCCcEEEeEEe-ecCCc
Q 045634 89 NELVNILDCK-KMNGKIVIPVFY-QVDPS 115 (353)
Q Consensus 89 ~El~~~~~~~-~~~~~~vipI~g-gVgkt 115 (353)
.|+..++... ++.+.+||||++ ++.+.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~ 108 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKK 108 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTT
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChh
Confidence 9999998643 555678999998 56554
No 10
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.86 E-value=1.8e-22 Score=169.13 Aligned_cols=103 Identities=19% Similarity=0.385 Sum_probs=88.3
Q ss_pred CCCCCceeEEEeccccccccchHHH-HHHHHHh--CCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccchh
Q 045634 10 LTGHSKYKVFLSFRGEDTRNGFTSH-LAAALHR--KQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKW 86 (353)
Q Consensus 10 ~~~~~~~dvFiSy~~~D~~~~f~~~-l~~~L~~--~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~ 86 (353)
....+.|||||||+++|. .|+.+ |+.+|++ +|+++|+|++|+.||+.+.++|.++|++|+++|+|+|++|+.|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 457789999999999994 69986 9999998 899999999999999999999999999999999999999999999
Q ss_pred hHhhhhhhhhcc-ccCCcEEEeEEe-ecCC
Q 045634 87 CLNELVNILDCK-KMNGKIVIPVFY-QVDP 114 (353)
Q Consensus 87 ~~~El~~~~~~~-~~~~~~vipI~g-gVgk 114 (353)
|..|+..++.+. ++.+.+||||++ ++.+
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~ 137 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIPF 137 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCCG
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence 999999999754 555678999998 4433
No 11
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.85 E-value=2.2e-22 Score=166.07 Aligned_cols=102 Identities=19% Similarity=0.294 Sum_probs=91.9
Q ss_pred CCCCCCceeEEEeccccccccchHHHHHHHHHhC--CcceeeccccccCCCCccHHHHHHhh-hcCeEEeeeccCcccch
Q 045634 9 SLTGHSKYKVFLSFRGEDTRNGFTSHLAAALHRK--QIQFFIDDEELEKGDEISPALFIAVE-TSDISVIILSKDYASSK 85 (353)
Q Consensus 9 ~~~~~~~~dvFiSy~~~D~~~~f~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~i~~~i~-~s~~~i~v~S~~~~~s~ 85 (353)
..+..+.|||||||+++| ..|+.+|+.+|+++ |+++|+|++++.||+.+.++|.++|+ .|+++|+|+|++|+.|.
T Consensus 10 ~~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~ 87 (160)
T 2js7_A 10 LGHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSK 87 (160)
T ss_dssp TSCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSH
T ss_pred CCCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCH
Confidence 345578999999999999 57999999999985 69999999999999999999999999 79999999999999999
Q ss_pred hhHhhhhhhhhcc-ccCCcEEEeEEeec
Q 045634 86 WCLNELVNILDCK-KMNGKIVIPVFYQV 112 (353)
Q Consensus 86 ~~~~El~~~~~~~-~~~~~~vipI~ggV 112 (353)
||..|+..++.+. ++.+.+||||+++.
T Consensus 88 wc~~El~~a~~~~~~~~~~~vIpV~~~~ 115 (160)
T 2js7_A 88 ECDFQTKFALSLSPGAHQKRLIPIKYKA 115 (160)
T ss_dssp HHHHHHHHHHHHCTTHHHHTEEEEESSC
T ss_pred HHHHHHHHHHHHHHccCCCEEEEEEEcc
Confidence 9999999999875 44556899999943
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.84 E-value=1.1e-21 Score=161.78 Aligned_cols=97 Identities=21% Similarity=0.321 Sum_probs=87.6
Q ss_pred CceeEEEecccccc---------ccchHHHHHH-HHH-hCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcc
Q 045634 14 SKYKVFLSFRGEDT---------RNGFTSHLAA-ALH-RKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYA 82 (353)
Q Consensus 14 ~~~dvFiSy~~~D~---------~~~f~~~l~~-~L~-~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~ 82 (353)
+.|||||||+++|+ ++.|+.++.. .|+ +.|+++|+|++|+.||+.+.++|.++|++|+++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 3568888665 699 699999999999999999999999999999999999999997
Q ss_pred -cchhhHhhhhhhhhcc-ccCCcEEEeEEe
Q 045634 83 -SSKWCLNELVNILDCK-KMNGKIVIPVFY 110 (353)
Q Consensus 83 -~s~~~~~El~~~~~~~-~~~~~~vipI~g 110 (353)
.|.||..|+..++.+. .+.+.+||||++
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~ 110 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIEC 110 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEEC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 9999999999999876 666789999987
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.54 E-value=3.8e-15 Score=154.34 Aligned_cols=99 Identities=17% Similarity=0.305 Sum_probs=89.3
Q ss_pred CCCCceeEEEeccccccccchH-HHHHHHHHh-----CCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccc
Q 045634 11 TGHSKYKVFLSFRGEDTRNGFT-SHLAAALHR-----KQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASS 84 (353)
Q Consensus 11 ~~~~~~dvFiSy~~~D~~~~f~-~~l~~~L~~-----~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s 84 (353)
...+.|||||||+++|. .|+ .+|...|+. .|+++|++++|+.||+.+.++|.++|++||++|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 35689999999999994 587 679999985 5899999999999999999999999999999999999999999
Q ss_pred hhhHhhhhhhhhcc-ccCCcEEEeEEee
Q 045634 85 KWCLNELVNILDCK-KMNGKIVIPVFYQ 111 (353)
Q Consensus 85 ~~~~~El~~~~~~~-~~~~~~vipI~gg 111 (353)
.||..|+..++.+. ++.+.++|||+++
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~ 771 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVG 771 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESS
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 99999999888766 6667789999983
No 14
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.06 E-value=2.3e-09 Score=98.92 Aligned_cols=179 Identities=17% Similarity=0.124 Sum_probs=112.3
Q ss_pred CceeeEeccccchHH---------HHHHHHhhcCCCCCcEEEEEeCccccccc-----------cC-ccceEEeCCCChh
Q 045634 169 MKVLIVLDDVHDEFT---------ELKSLARRLQFSGRSRIIITSRDKGVLDK-----------CG-VNNMYEVKGLKYN 227 (353)
Q Consensus 169 kr~LlVLDdv~~~~~---------~~~~l~~~~~~~~gs~IivTTR~~~v~~~-----------~~-~~~~~~l~~L~~~ 227 (353)
++++|||||++. .. .+..+.......++.++|+|++...+... .+ ....+++.+|+.+
T Consensus 128 ~~~vlvlDe~~~-~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 128 GEFIVAFDEAQY-LRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKD 206 (350)
T ss_dssp SCEEEEEETGGG-GGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHH
T ss_pred CCEEEEEeCHHH-HhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHH
Confidence 489999999987 32 23333332222357889999886542111 11 1247899999999
Q ss_pred HHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhccccc--ccc---CCCchHHHHHHhhhccC---CHhH
Q 045634 228 KALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNNGKL--MKL---ISEPNIYNVLKISYDEL---NLEE 299 (353)
Q Consensus 228 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~~~~~--l~~---~~~~~v~~~l~~sy~~L---~~~~ 299 (353)
|+.+++....-..... -..+.+..+.+.|+|+|+++..++...... ... ...+.+...+.-.+..+ ++..
T Consensus 207 e~~~~l~~~~~~~~~~--~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 284 (350)
T 2qen_A 207 TSVEFLKRGFREVNLD--VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRY 284 (350)
T ss_dssp HHHHHHHHHHHTTTCC--CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhH
Confidence 9999998653211111 124567889999999999999988641110 000 00011222233333444 7888
Q ss_pred HHHHhhhhccCCCCCHHHHHHHH-----hcC-----chHHHHhhCCCcEeeCCeEEe-chhhhh
Q 045634 300 KKTFLDIACFFTGEDIDFVRRIR-----DDP-----SSLDTFVDKSLITIFYNELQM-HDLLQE 352 (353)
Q Consensus 300 k~~fl~la~fp~~~~~~~l~~~w-----~~~-----~~l~~L~~~sLl~~~~~~~~m-Hdlv~d 352 (353)
+.++..+|+ ...+...+.... ... .+++.|.+.+||...+++|++ |+++++
T Consensus 285 ~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~ 346 (350)
T 2qen_A 285 VDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVAT 346 (350)
T ss_dssp HHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHH
Confidence 999999998 334556665554 112 789999999999987788887 556654
No 15
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.90 E-value=1.5e-08 Score=93.65 Aligned_cols=177 Identities=18% Similarity=0.114 Sum_probs=109.1
Q ss_pred CceeeEeccccc-h----HHHHHHHHhhcCCCCCcEEEEEeCccccccc----------c-Cc-cceEEeCCCChhHHHH
Q 045634 169 MKVLIVLDDVHD-E----FTELKSLARRLQFSGRSRIIITSRDKGVLDK----------C-GV-NNMYEVKGLKYNKALE 231 (353)
Q Consensus 169 kr~LlVLDdv~~-~----~~~~~~l~~~~~~~~gs~IivTTR~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~ 231 (353)
++++|||||++. + ...+..+.......++.++|+|++....... . +. ...+.+.+|+.+|+.+
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHH
Confidence 489999999976 1 1122233222222347789999987542110 1 11 2578999999999999
Q ss_pred HHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhccccc-----cccCCCchHHHHHHhhhc-------cCCHhH
Q 045634 232 LFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANNNGKL-----MKLISEPNIYNVLKISYD-------ELNLEE 299 (353)
Q Consensus 232 Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~~~~~-----l~~~~~~~v~~~l~~sy~-------~L~~~~ 299 (353)
++....-......... ..|.+.|+|+|+++..++...... +.....+.+...+.-.+. .|++..
T Consensus 217 ~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 292 (357)
T 2fna_A 217 FLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRY 292 (357)
T ss_dssp HHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHH
Confidence 9987542112112122 789999999999999888651110 000000111112221122 678899
Q ss_pred HHHHhhhhccCCCCCHHHHHH----HHh--cC-----chHHHHhhCCCcEeeCCeEEe-chhhhh
Q 045634 300 KKTFLDIACFFTGEDIDFVRR----IRD--DP-----SSLDTFVDKSLITIFYNELQM-HDLLQE 352 (353)
Q Consensus 300 k~~fl~la~fp~~~~~~~l~~----~w~--~~-----~~l~~L~~~sLl~~~~~~~~m-Hdlv~d 352 (353)
+..+..+|+- . +...+.. ... .. .+++.|.+.+||...++.|++ |+++++
T Consensus 293 ~~~l~~la~g--~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~ 354 (357)
T 2fna_A 293 LNIMRTLSKC--G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISL 354 (357)
T ss_dssp HHHHHHHTTC--B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHH
T ss_pred HHHHHHHHcC--C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHH
Confidence 9999999982 2 5555543 222 11 789999999999887778885 678775
No 16
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.89 E-value=2.9e-08 Score=93.79 Aligned_cols=268 Identities=12% Similarity=0.063 Sum_probs=142.6
Q ss_pred cccchhhHhhhhhhh-hcc-cc--CCcEEEeE--Ee--ecCCcccccccc------------cccccceecccCCchHHH
Q 045634 81 YASSKWCLNELVNIL-DCK-KM--NGKIVIPV--FY--QVDPSDVRKQRR------------SFGEAFVHHENNFPDKVQ 140 (353)
Q Consensus 81 ~~~s~~~~~El~~~~-~~~-~~--~~~~vipI--~g--gVgkt~~~~~~~------------~f~~~~~~~~~~~~~~~~ 140 (353)
+....--++++...+ ... .+ .....+-| .| |+|||.+.+... .+...+..+. .......
T Consensus 24 l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 102 (412)
T 1w5s_A 24 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF-NAPNLYT 102 (412)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG-GCCSHHH
T ss_pred CCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC-CCCCHHH
Confidence 444444566666666 432 12 23334444 77 999995533221 1112222222 1223334
Q ss_pred HHHHHHHhhccC---CCCCch--HHHHHHHHh--cCceeeEeccccchH--------HHHHHHHhhcC-C---C--CCcE
Q 045634 141 KWRDALTEASNL---SGYDST--ESRIKKRLQ--LMKVLIVLDDVHDEF--------TELKSLARRLQ-F---S--GRSR 199 (353)
Q Consensus 141 ~~~~~l~~~~~~---~g~~~~--~~~l~~~L~--~kr~LlVLDdv~~~~--------~~~~~l~~~~~-~---~--~gs~ 199 (353)
.+...+.++... .+.... ...+.+.+. +++++|||||++. . ..+..+...+. . + ....
T Consensus 103 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~-l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 103 ILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQS-MLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHH-HHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHH-HhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 455555554321 122211 245555554 6799999999987 3 33443433332 2 2 4455
Q ss_pred EEEEeCccccccccC---------ccceEEeCCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcC------CChHH
Q 045634 200 IIITSRDKGVLDKCG---------VNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHAD------GNPLA 264 (353)
Q Consensus 200 IivTTR~~~v~~~~~---------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~------glPLa 264 (353)
+|+||+...+...+. ....+++++++.++..++|...+........-..+....+++.|+ |.|..
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 888887655321110 122399999999999999976542111111122467788999999 99976
Q ss_pred HHHHhhccc--c---ccccCCCchHH---------HHHHhhhccCCHhHHHHHhhhhccC----CCCCHHHHH-------
Q 045634 265 LEVLANNNG--K---LMKLISEPNIY---------NVLKISYDELNLEEKKTFLDIACFF----TGEDIDFVR------- 319 (353)
Q Consensus 265 l~~~g~~~~--~---~l~~~~~~~v~---------~~l~~sy~~L~~~~k~~fl~la~fp----~~~~~~~l~------- 319 (353)
+..+..... . .-.......+. ..+.-++..||...+.++..+|.+. ...+...+.
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~ 341 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDAS 341 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 555443310 0 00001111222 2344456789999999999999754 123343222
Q ss_pred -HHHhc--------CchHHHHhhCCCcEee------CCeEEechhh
Q 045634 320 -RIRDD--------PSSLDTFVDKSLITIF------YNELQMHDLL 350 (353)
Q Consensus 320 -~~w~~--------~~~l~~L~~~sLl~~~------~~~~~mHdlv 350 (353)
..... ..+++.|.+.+||... .|+|++|+|.
T Consensus 342 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 342 LTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 22111 0789999999999875 3457777664
No 17
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.46 E-value=2.8e-06 Score=79.26 Aligned_cols=263 Identities=12% Similarity=0.050 Sum_probs=140.0
Q ss_pred cccchhhHhhhhhhhhcc-ccCCcEEEeEEe--ecCCccccccccc-----------c-cccce--ecccCCc-hHHHHH
Q 045634 81 YASSKWCLNELVNILDCK-KMNGKIVIPVFY--QVDPSDVRKQRRS-----------F-GEAFV--HHENNFP-DKVQKW 142 (353)
Q Consensus 81 ~~~s~~~~~El~~~~~~~-~~~~~~vipI~g--gVgkt~~~~~~~~-----------f-~~~~~--~~~~~~~-~~~~~~ 142 (353)
+....--++++..++... .+.....+-|.| |+|||.+.+.... + ...+. ... ... .....+
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~ 100 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR-EVGGTPQAVL 100 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH-HHCSCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc-cCCCCHHHHH
Confidence 444444556666555443 233344667777 9999955433211 1 21111 111 111 222333
Q ss_pred HHHHHhhccC----CCCCch--HHHHHHHHhcCceeeEeccccchHHH---HHH-HHhhcCCCCCcEEEEEeCccccccc
Q 045634 143 RDALTEASNL----SGYDST--ESRIKKRLQLMKVLIVLDDVHDEFTE---LKS-LARRLQFSGRSRIIITSRDKGVLDK 212 (353)
Q Consensus 143 ~~~l~~~~~~----~g~~~~--~~~l~~~L~~kr~LlVLDdv~~~~~~---~~~-l~~~~~~~~gs~IivTTR~~~v~~~ 212 (353)
...+.++.+. .+.... ...+.+.+..++.+||||+++. ... .+. +...+....+..+|+||+.......
T Consensus 101 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~-l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 101 SSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDT-LVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHH-HHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHH-hccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 4444444211 122111 2566667776666999999987 322 222 2222222267889999987642211
Q ss_pred c------CccceEEeCCCChhHHHHHHHHhhhc---cCCCCccHHHHHHHHHHHcC---CChH-HHHHHhhc---ccccc
Q 045634 213 C------GVNNMYEVKGLKYNKALELFCRKAFR---ETNCSHDLLELSEEVVRHAD---GNPL-ALEVLANN---NGKLM 276 (353)
Q Consensus 213 ~------~~~~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~~~~~i~~~c~---glPL-al~~~g~~---~~~~l 276 (353)
+ .....+.+++++.++..++|...+-. ..... .+....+++.|+ |.|. |+.++-.. .. .-
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~-~~ 255 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLAS-GG 255 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-SS
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-CC
Confidence 1 11238999999999999999987532 12222 345667777777 8887 44444333 11 10
Q ss_pred ccCCCchHH--------HHHHhhhccCCHhHHHHHhhhhccCCCCCHH-HHHHHHh---cC--------chHHHHhhCCC
Q 045634 277 KLISEPNIY--------NVLKISYDELNLEEKKTFLDIACFFTGEDID-FVRRIRD---DP--------SSLDTFVDKSL 336 (353)
Q Consensus 277 ~~~~~~~v~--------~~l~~sy~~L~~~~k~~fl~la~fp~~~~~~-~l~~~w~---~~--------~~l~~L~~~sL 336 (353)
.....+.+. ..+..+++.|+...+..+..++....+-+.. ....+.. .. .+++.|.+++|
T Consensus 256 ~~i~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gl 335 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGI 335 (384)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTS
T ss_pred CccCHHHHHHHHHHHhcchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Confidence 111112222 3455667889998888888777611101111 1111111 11 88999999999
Q ss_pred cEee------CCeEEechh
Q 045634 337 ITIF------YNELQMHDL 349 (353)
Q Consensus 337 l~~~------~~~~~mHdl 349 (353)
+... .|+++++.|
T Consensus 336 i~~~~~~~g~~g~~~~~~l 354 (384)
T 2qby_B 336 VKIRIINRGRAGGVKKYAL 354 (384)
T ss_dssp EEEEEECCTTTTCCEEEEE
T ss_pred EEEEeccCCCCCceEEEEe
Confidence 9875 245656544
No 18
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.29 E-value=6.3e-06 Score=76.64 Aligned_cols=268 Identities=12% Similarity=0.068 Sum_probs=138.3
Q ss_pred cccchhhHhhhhhhhhcc-ccCCcEEEeEEe--ecCCccccccc-ccc------c--ccceecccCCchHHHHHHHHHHh
Q 045634 81 YASSKWCLNELVNILDCK-KMNGKIVIPVFY--QVDPSDVRKQR-RSF------G--EAFVHHENNFPDKVQKWRDALTE 148 (353)
Q Consensus 81 ~~~s~~~~~El~~~~~~~-~~~~~~vipI~g--gVgkt~~~~~~-~~f------~--~~~~~~~~~~~~~~~~~~~~l~~ 148 (353)
+....--++++..++... .......+-|.| |+|||.+.+.. +.. . ..+.... ........+...+.+
T Consensus 22 ~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~i~~~ 100 (386)
T 2qby_A 22 LPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR-QIDTPYRVLADLLES 100 (386)
T ss_dssp CTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH-HHCSHHHHHHHHTTT
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC-CCCCHHHHHHHHHHH
Confidence 344444455555555432 223344666777 99999554332 111 1 1111111 111222333344333
Q ss_pred hccC---CCCCch--HHHHHHHHh--cCceeeEeccccc-h----HHHHHHHHhhcC--CCCCcEEEEEeCccccccccC
Q 045634 149 ASNL---SGYDST--ESRIKKRLQ--LMKVLIVLDDVHD-E----FTELKSLARRLQ--FSGRSRIIITSRDKGVLDKCG 214 (353)
Q Consensus 149 ~~~~---~g~~~~--~~~l~~~L~--~kr~LlVLDdv~~-~----~~~~~~l~~~~~--~~~gs~IivTTR~~~v~~~~~ 214 (353)
+... .+.... ...+.+.+. +++.+||||+++. . ...+..+...+. ...+..+|+||+.......+.
T Consensus 101 l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~ 180 (386)
T 2qby_A 101 LDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLD 180 (386)
T ss_dssp TSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCT
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhC
Confidence 3211 111111 234555554 3488999999976 1 223444443332 233556788887665432221
Q ss_pred -------ccceEEeCCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcC---CChHHHH-HHhhc-ccccc---ccC
Q 045634 215 -------VNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHAD---GNPLALE-VLANN-NGKLM---KLI 279 (353)
Q Consensus 215 -------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~---glPLal~-~~g~~-~~~~l---~~~ 279 (353)
....+.+++++.++..+++...+-.......-..+....+++.++ |.|..+. ++... ..... ...
T Consensus 181 ~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i 260 (386)
T 2qby_A 181 PRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKV 260 (386)
T ss_dssp THHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 124799999999999999988653211111123455667777777 9998443 33332 11000 011
Q ss_pred CCchH--------HHHHHhhhccCCHhHHHHHhhhhccCC-C---CCHH-------HHHHHHhcC--------chHHHHh
Q 045634 280 SEPNI--------YNVLKISYDELNLEEKKTFLDIACFFT-G---EDID-------FVRRIRDDP--------SSLDTFV 332 (353)
Q Consensus 280 ~~~~v--------~~~l~~sy~~L~~~~k~~fl~la~fp~-~---~~~~-------~l~~~w~~~--------~~l~~L~ 332 (353)
....+ ...+.-++..||...+..+..++.+.+ + +... .+....... .+++.|.
T Consensus 261 ~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~ 340 (386)
T 2qby_A 261 KEEYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELD 340 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 11122 235666778899988888888885432 2 2232 222222111 8899999
Q ss_pred hCCCcEee------CCeEEechh
Q 045634 333 DKSLITIF------YNELQMHDL 349 (353)
Q Consensus 333 ~~sLl~~~------~~~~~mHdl 349 (353)
+.++|... .|+|+.+.|
T Consensus 341 ~~gli~~~~~~~~~~g~y~~~~l 363 (386)
T 2qby_A 341 MVGILTAKVVNRGRYGKTKEIGL 363 (386)
T ss_dssp HHTSEEEEECCCTTSCCCEEEEE
T ss_pred hCCCEEEEeecCCCCCCeEEEEe
Confidence 99999874 355666644
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.28 E-value=9.7e-06 Score=75.42 Aligned_cols=265 Identities=12% Similarity=0.070 Sum_probs=136.3
Q ss_pred cccchhhHhhhhhhhhcc-ccCCcEEEeEEe--ecCCcccccccc-cc---------cccceec-ccCCchHHHHHHHHH
Q 045634 81 YASSKWCLNELVNILDCK-KMNGKIVIPVFY--QVDPSDVRKQRR-SF---------GEAFVHH-ENNFPDKVQKWRDAL 146 (353)
Q Consensus 81 ~~~s~~~~~El~~~~~~~-~~~~~~vipI~g--gVgkt~~~~~~~-~f---------~~~~~~~-~~~~~~~~~~~~~~l 146 (353)
+....--++++..++... .......+-|.| |+|||.+.+... .. ...+... .....+....+...+
T Consensus 21 ~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 100 (387)
T 2v1u_A 21 LPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIA 100 (387)
T ss_dssp CTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHH
Confidence 344444455665555433 223334555677 999995543321 11 2122211 112223334444444
Q ss_pred Hhhcc---CCCCCch--HHHHHHHHh--cCceeeEeccccchHH----HHHHHH---hhcC-C--CCCcEEEEEeCcccc
Q 045634 147 TEASN---LSGYDST--ESRIKKRLQ--LMKVLIVLDDVHDEFT----ELKSLA---RRLQ-F--SGRSRIIITSRDKGV 209 (353)
Q Consensus 147 ~~~~~---~~g~~~~--~~~l~~~L~--~kr~LlVLDdv~~~~~----~~~~l~---~~~~-~--~~gs~IivTTR~~~v 209 (353)
.++.. ..|.... ...+.+.+. +++.+||||+++. .. ..+.+. .... . ..+..+|.||+....
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~-l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~ 179 (387)
T 2v1u_A 101 EAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDF-LPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGF 179 (387)
T ss_dssp HHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTH-HHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTT
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhh-hcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCch
Confidence 44432 1222111 244555553 4588999999987 32 223332 2222 1 456678888877643
Q ss_pred ccccC------c-cceEEeCCCChhHHHHHHHHhhhc---cCCCCccHHHHHHHHHHHcC---CChH-HHHHHhhc---c
Q 045634 210 LDKCG------V-NNMYEVKGLKYNKALELFCRKAFR---ETNCSHDLLELSEEVVRHAD---GNPL-ALEVLANN---N 272 (353)
Q Consensus 210 ~~~~~------~-~~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~~~~~i~~~c~---glPL-al~~~g~~---~ 272 (353)
...+. . ...+.+++++.++..+++...+-. ..... .+....+++.++ |.|- ++.++... .
T Consensus 180 ~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 180 VENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGEIA 256 (387)
T ss_dssp SSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 22111 1 147899999999999999887532 12222 234566777777 9994 33333333 1
Q ss_pred c-cccccCCCchH--------HHHHHhhhccCCHhHHHHHhhhhccCCCC---CHHHHHH----HHh---cC--------
Q 045634 273 G-KLMKLISEPNI--------YNVLKISYDELNLEEKKTFLDIACFFTGE---DIDFVRR----IRD---DP-------- 325 (353)
Q Consensus 273 ~-~~l~~~~~~~v--------~~~l~~sy~~L~~~~k~~fl~la~fp~~~---~~~~l~~----~w~---~~-------- 325 (353)
. ..-.......+ ...+.-++..|+...+..++.++....+. ....+.+ +.. ..
T Consensus 257 ~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (387)
T 2v1u_A 257 ERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVS 336 (387)
T ss_dssp HHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 0 00001111112 23455567889999888888777443332 2332222 111 11
Q ss_pred chHHHHhhCCCcEee------CCeEEechh
Q 045634 326 SSLDTFVDKSLITIF------YNELQMHDL 349 (353)
Q Consensus 326 ~~l~~L~~~sLl~~~------~~~~~mHdl 349 (353)
.+++.|...|++... .|+++.+.|
T Consensus 337 ~~l~~L~~~gli~~~~~~~g~~g~~~~~~l 366 (387)
T 2v1u_A 337 GIISELDMLGIVKSRVVSRGRYGKTREVSL 366 (387)
T ss_dssp HHHHHHHHTTSEEEEEEECGGGCEEEEEEE
T ss_pred HHHHHHHhCCCeEEEeecCCCCCceeEEEe
Confidence 899999999999984 355655543
No 20
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.15 E-value=4.7e-05 Score=70.89 Aligned_cols=259 Identities=12% Similarity=0.074 Sum_probs=138.3
Q ss_pred ccchhhHhhhhhhhhcc-ccCCcE--EEeEEe--ecCCccccccc-ccc----cccceecc-cCCchHHHHHHHHHHhhc
Q 045634 82 ASSKWCLNELVNILDCK-KMNGKI--VIPVFY--QVDPSDVRKQR-RSF----GEAFVHHE-NNFPDKVQKWRDALTEAS 150 (353)
Q Consensus 82 ~~s~~~~~El~~~~~~~-~~~~~~--vipI~g--gVgkt~~~~~~-~~f----~~~~~~~~-~~~~~~~~~~~~~l~~~~ 150 (353)
....--++++..++... .+.... .+-|.| |+|||.+.+.. +.. ...+.... .........+...+..+.
T Consensus 20 ~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~ 99 (389)
T 1fnn_A 20 PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLN 99 (389)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhC
Confidence 33344455555555543 122223 667788 99999554332 111 11121111 122233444555555443
Q ss_pred cC---CCCCch--HHHHHHHHh--cCceeeEeccccc-hHHHHHHHHhhcC-C-C---CCcEEEEEeCccccccccC---
Q 045634 151 NL---SGYDST--ESRIKKRLQ--LMKVLIVLDDVHD-EFTELKSLARRLQ-F-S---GRSRIIITSRDKGVLDKCG--- 214 (353)
Q Consensus 151 ~~---~g~~~~--~~~l~~~L~--~kr~LlVLDdv~~-~~~~~~~l~~~~~-~-~---~gs~IivTTR~~~v~~~~~--- 214 (353)
.. .+.... ...+...+. +++.+||||+++. +......+...+. . . .+..+|++|+.........
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~ 179 (389)
T 1fnn_A 100 IPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPST 179 (389)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHh
Confidence 21 121111 134444443 4678999999987 3445555555443 1 1 4677888887664322221
Q ss_pred ----ccceEEeCCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHc---------CCChHHHHHHhhcccc-----cc
Q 045634 215 ----VNNMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHA---------DGNPLALEVLANNNGK-----LM 276 (353)
Q Consensus 215 ----~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c---------~glPLal~~~g~~~~~-----~l 276 (353)
....+.+++++.++..+++...+........-..+....+++.+ +|.|..+..+...... .-
T Consensus 180 ~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~ 259 (389)
T 1fnn_A 180 RGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGR 259 (389)
T ss_dssp HHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 12369999999999999998876321111112346678888888 7887554443332110 10
Q ss_pred ccCCCchHHHH--------HHhhhccCCHhHHHHHhhhhccC---CC--CCHHHHHHHHhc-------C--------chH
Q 045634 277 KLISEPNIYNV--------LKISYDELNLEEKKTFLDIACFF---TG--EDIDFVRRIRDD-------P--------SSL 328 (353)
Q Consensus 277 ~~~~~~~v~~~--------l~~sy~~L~~~~k~~fl~la~fp---~~--~~~~~l~~~w~~-------~--------~~l 328 (353)
.....+.+..+ +.-.+..|+.+.+.++..++.+. .+ .....+...+.. . .++
T Consensus 260 ~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 339 (389)
T 1fnn_A 260 KHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYL 339 (389)
T ss_dssp SSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 11111223322 22336678888888888787654 22 333433332211 1 899
Q ss_pred HHHhhCCCcEee
Q 045634 329 DTFVDKSLITIF 340 (353)
Q Consensus 329 ~~L~~~sLl~~~ 340 (353)
+.|.++++|...
T Consensus 340 ~~L~~~gli~~~ 351 (389)
T 1fnn_A 340 NDLREKGIVETR 351 (389)
T ss_dssp HHHHHTTSSEEE
T ss_pred HHHHhCCCeEEe
Confidence 999999999985
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.13 E-value=5.5e-05 Score=65.01 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=72.6
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcccccc-cc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKGVLD-KC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++.+||+||++. ....++.+...+. ...+..+|+||+...... .. .....+++++++.++..+++...+......
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~ 204 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 204 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4678999999976 3556777776665 566788898887654321 11 123578999999999999998877543211
Q ss_pred CccHHHHHHHHHHHcCCChHHHHHHhhc
Q 045634 244 SHDLLELSEEVVRHADGNPLALEVLANN 271 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal~~~g~~ 271 (353)
-..+....|++.|+|.|..+..+...
T Consensus 205 --~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 205 --HEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp --BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22456788999999999988766543
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.85 E-value=0.00035 Score=59.05 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=67.9
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccccc-ccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKGVL-DKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
.++.+||+||++. .....+.+...+. ...+..+|+||+..... ... .....+++.+++.++..+++...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 4688999999987 2345566666555 66778899988765422 111 122378999999999999998876432221
Q ss_pred CccHHHHHHHHHHHcCCChHHHHHH
Q 045634 244 SHDLLELSEEVVRHADGNPLALEVL 268 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal~~~ 268 (353)
-..+....+++.++|.|..+..+
T Consensus 181 --~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 181 --ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp --BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22456778889999999865433
No 23
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.43 E-value=0.0051 Score=55.53 Aligned_cols=170 Identities=11% Similarity=0.088 Sum_probs=98.1
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CC------------------CCcEEEEEeCccccc-ccc--CccceEEeCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FS------------------GRSRIIITSRDKGVL-DKC--GVNNMYEVKGLK 225 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~------------------~gs~IivTTR~~~v~-~~~--~~~~~~~l~~L~ 225 (353)
+..+|+||+++. .....+.+...+. .. ++..+|.||...... ..+ .....+.+.+++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 467899999987 2333444433322 11 234566666544322 111 123578999999
Q ss_pred hhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhc--cccccc---cCCCchH---HHHHHhhhccCCH
Q 045634 226 YNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANN--NGKLMK---LISEPNI---YNVLKISYDELNL 297 (353)
Q Consensus 226 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~--~~~~l~---~~~~~~v---~~~l~~sy~~L~~ 297 (353)
.++..+++...+..... .-..+....+++.++|.|-.+..+... ...... ......+ ...+..++..|+.
T Consensus 170 ~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 247 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGLEK 247 (324)
T ss_dssp HHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCCTTCCCH
T ss_pred HHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcccccCCCH
Confidence 99999998887643221 123466788999999999887765544 111111 1111222 2333345566777
Q ss_pred hHHHHHhhhhccC--CCCCHHHHHHHHhcC-----chHHH-HhhCCCcEee
Q 045634 298 EEKKTFLDIACFF--TGEDIDFVRRIRDDP-----SSLDT-FVDKSLITIF 340 (353)
Q Consensus 298 ~~k~~fl~la~fp--~~~~~~~l~~~w~~~-----~~l~~-L~~~sLl~~~ 340 (353)
..+..+..+.... .......+...+.-. ..++. +++.+|+...
T Consensus 248 ~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~ 298 (324)
T 1hqc_A 248 RDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRT 298 (324)
T ss_dssp HHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcC
Confidence 7788877666432 234566666655443 33333 8888998766
No 24
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.34 E-value=0.00031 Score=53.21 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=52.6
Q ss_pred CceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccchhhHhhhhh
Q 045634 14 SKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVN 93 (353)
Q Consensus 14 ~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~ 93 (353)
.+|.+||||..+|..+.|+. .|.+.|+.. .| +.|+.|.+.|++.++....|+||..|+..
T Consensus 3 ~~~~lFISh~~~d~~~~L~~----~l~~~~f~~-~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVEDYRVFLE----RLEQSGLEW-RP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSHHHHHHHH----HHHHHCSCE-EE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHhHHHHHHH----HHhCCCCee-ec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 57999999999983333443 333445532 22 67899999999999999999999999987
Q ss_pred hhhccccCCcEEEeEEe
Q 045634 94 ILDCKKMNGKIVIPVFY 110 (353)
Q Consensus 94 ~~~~~~~~~~~vipI~g 110 (353)
+.+.. .+++.|..
T Consensus 63 A~~~g----kpIigV~~ 75 (111)
T 1eiw_A 63 ARKSS----KPIITVRP 75 (111)
T ss_dssp HTTTT----CCEEEECC
T ss_pred HHHcC----CCEEEEEc
Confidence 77533 44555544
No 25
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=0.0032 Score=56.63 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=67.6
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcccc-cccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKGV-LDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++.++|+||++. ....++.+...+. ...++.+|+||....- ...+ .....+++.+++.++..+++...+......
T Consensus 106 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 185 (323)
T 1sxj_B 106 GKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVK 185 (323)
T ss_dssp TCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCC
Confidence 4588999999986 2344555655555 5677888888866432 1111 123479999999999999998876432211
Q ss_pred CccHHHHHHHHHHHcCCChH-HHHHHhh
Q 045634 244 SHDLLELSEEVVRHADGNPL-ALEVLAN 270 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPL-al~~~g~ 270 (353)
-..+....+++.|+|.|. |+..+..
T Consensus 186 --~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 186 --YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp --BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 224567889999999995 4454433
No 26
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.56 E-value=0.057 Score=48.88 Aligned_cols=173 Identities=9% Similarity=0.087 Sum_probs=97.5
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CC------------------CCcEEEEEeCccccc-ccc--CccceEEeCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FS------------------GRSRIIITSRDKGVL-DKC--GVNNMYEVKGLK 225 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~------------------~gs~IivTTR~~~v~-~~~--~~~~~~~l~~L~ 225 (353)
+..+|+||+++. .....+.+...+. .. ++..+|.+|...... ..+ .....+.+.+++
T Consensus 106 ~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~ 185 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYK 185 (338)
T ss_dssp TTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred CCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcC
Confidence 567899999986 2333444443332 11 124566555543321 111 123579999999
Q ss_pred hhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhc--ccccccc---CCCchH---HHHHHhhhccCCH
Q 045634 226 YNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANN--NGKLMKL---ISEPNI---YNVLKISYDELNL 297 (353)
Q Consensus 226 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~--~~~~l~~---~~~~~v---~~~l~~sy~~L~~ 297 (353)
.++...++...+-... ..-..+....+++.+.|.|-.+..+... ....... .....+ ...+..+...++.
T Consensus 186 ~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~ 263 (338)
T 3pfi_A 186 DSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDA 263 (338)
T ss_dssp HHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCTTCCCH
T ss_pred HHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCcccCCCH
Confidence 9999999887764322 2223466778888999999655443332 1111111 111222 2233445556666
Q ss_pred hHHHHHhhhhccC-CCCCHHHHHHHHhcC-----chHH-HHhhCCCcEee-CCe
Q 045634 298 EEKKTFLDIACFF-TGEDIDFVRRIRDDP-----SSLD-TFVDKSLITIF-YNE 343 (353)
Q Consensus 298 ~~k~~fl~la~fp-~~~~~~~l~~~w~~~-----~~l~-~L~~~sLl~~~-~~~ 343 (353)
..+..+..++-.. .......+...+.-. +.++ .|++.+||... .|+
T Consensus 264 ~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~ 317 (338)
T 3pfi_A 264 MDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGR 317 (338)
T ss_dssp HHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTEE
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCcc
Confidence 6566666666542 223566766666544 4566 89999999876 454
No 27
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.55 E-value=0.014 Score=52.42 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=67.9
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccccc-ccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKGVL-DKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++.++|+|+++. .....+.+...+. ...++++|+||...... ..+ .....+++.+++.++..+++...+....
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~-- 186 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-- 186 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTT--
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcC--
Confidence 5678999999986 3455666766666 66778899888765421 111 1124789999999999999887764322
Q ss_pred CccHHHHHHHHHHHcCCChHHHHHH
Q 045634 244 SHDLLELSEEVVRHADGNPLALEVL 268 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal~~~ 268 (353)
..-..+....+++.++|.|..+..+
T Consensus 187 ~~~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 187 LELTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp CEECHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHH
Confidence 1123456788899999999865443
No 28
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.99 E-value=0.028 Score=45.79 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=63.4
Q ss_pred ceeEEEec--------------cccccccchHHHHHHHHHhCCcceeecccccc-------C-CCCccHHHHHHhhhcCe
Q 045634 15 KYKVFLSF--------------RGEDTRNGFTSHLAAALHRKQIQFFIDDEELE-------K-GDEISPALFIAVETSDI 72 (353)
Q Consensus 15 ~~dvFiSy--------------~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~-------~-g~~~~~~i~~~i~~s~~ 72 (353)
+--+|++| ..+| -.....|..--....+-.|.|..+.. . -..|...|.++|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 44578888 3344 33555565555555666777764441 2 24577889999999999
Q ss_pred EEeeeccCcccchhhHhhhhhhh-hccccCCcEEEeEE
Q 045634 73 SVIILSKDYASSKWCLNELVNIL-DCKKMNGKIVIPVF 109 (353)
Q Consensus 73 ~i~v~S~~~~~s~~~~~El~~~~-~~~~~~~~~vipI~ 109 (353)
.|+++|++...|.|-..|++.++ ++. .+||.|.
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~~~~----~PII~Vy 116 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIGTKG----LPVIVIY 116 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTTTTC----CCEEEEE
T ss_pred EEEEEecCccccchhHHHHHHHHHhcC----CcEEEEE
Confidence 99999999999999999999988 433 4455553
No 29
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.98 E-value=0.027 Score=50.37 Aligned_cols=98 Identities=12% Similarity=0.113 Sum_probs=66.1
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. .....+.+...+. ...+..+|+||.... +...+ .....+++.+++.++..+++...+-....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~- 179 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV- 179 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 4578999999986 2445566666666 566788888876544 21111 12347899999999999998877643221
Q ss_pred CccHHHHHHHHHHHcCCChHHHHH
Q 045634 244 SHDLLELSEEVVRHADGNPLALEV 267 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal~~ 267 (353)
.-..+....+++.++|.|..+..
T Consensus 180 -~i~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 180 -KITEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp -CBCHHHHHHHHHTTTTCHHHHHH
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHH
Confidence 12345677888999999886543
No 30
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.16 E-value=0.33 Score=43.84 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=63.0
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
++-++++|+++. .....+.+...+. .....++|++|.... +...+ .....+.+.+++.++....+...+-.....
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~- 211 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVK- 211 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC-
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC-
Confidence 456899999976 2344556665555 555677777775443 22111 112478899999999999888776332211
Q ss_pred ccHHHHHHHHHHHcCCChHHHHH
Q 045634 245 HDLLELSEEVVRHADGNPLALEV 267 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal~~ 267 (353)
-..+....|++.++|.|-.+..
T Consensus 212 -i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 212 -CDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp -CCHHHHHHHHHHTSSCHHHHHH
T ss_pred -CCHHHHHHHHHHcCCCHHHHHH
Confidence 2246678899999999986543
No 31
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.48 E-value=0.19 Score=47.53 Aligned_cols=102 Identities=13% Similarity=0.097 Sum_probs=62.6
Q ss_pred HHHHHhcCceeeEeccccc-hH--HHHHHHHhhcC--CCCCcEEEEEeCcccc---------ccccCccceEEeCCCChh
Q 045634 162 IKKRLQLMKVLIVLDDVHD-EF--TELKSLARRLQ--FSGRSRIIITSRDKGV---------LDKCGVNNMYEVKGLKYN 227 (353)
Q Consensus 162 l~~~L~~kr~LlVLDdv~~-~~--~~~~~l~~~~~--~~~gs~IivTTR~~~v---------~~~~~~~~~~~l~~L~~~ 227 (353)
+...+..+.-+|+|||++. .. ...+.+...+. ...|..||+||.+..- ...+.....+.+++++.+
T Consensus 187 ~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e 266 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHH
T ss_pred HHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHH
Confidence 3444443677999999976 11 23344444433 3457789998876321 111222357889999999
Q ss_pred HHHHHHHHhhhccC-CCCccHHHHHHHHHHHcCCChHHHH
Q 045634 228 KALELFCRKAFRET-NCSHDLLELSEEVVRHADGNPLALE 266 (353)
Q Consensus 228 ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~c~glPLal~ 266 (353)
+-.+++...+-... ..+ .+....|++.+.|.+-.+.
T Consensus 267 ~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 267 TRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 99999988764322 112 2346677888888876554
No 32
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.37 E-value=0.43 Score=43.41 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=67.1
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcccc-cccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKGV-LDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++.++|+|+++. .....+.+...+. ...+..+|++|....- ...+ .....+++.+++.++..+++...+-....
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~- 196 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI- 196 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 4578999999986 3455666766665 5566777777765432 1111 12357899999999999998876533221
Q ss_pred CccHHHHHHHHHHHcCCChHHHHHHh
Q 045634 244 SHDLLELSEEVVRHADGNPLALEVLA 269 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal~~~g 269 (353)
.-..+....+++.++|.|..+..+.
T Consensus 197 -~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 197 -AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp -CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred -CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1224567789999999998876543
No 33
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.32 E-value=1.3 Score=39.99 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=65.2
Q ss_pred cCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCC
Q 045634 168 LMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNC 243 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 243 (353)
+++-++|+|+++. .....+.+...+. ...++.+|++|.+.. +...+ .....+++.+++.++..+.+.... .
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~- 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T- 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-
Confidence 4577899999987 3455667777776 566777777776653 33222 223578999999999999888765 1
Q ss_pred CccHHHHHHHHHHHcCCChHHHHHH
Q 045634 244 SHDLLELSEEVVRHADGNPLALEVL 268 (353)
Q Consensus 244 ~~~~~~~~~~i~~~c~glPLal~~~ 268 (353)
-..+.+..+++.++|.|..+..+
T Consensus 182 --~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 182 --MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp --CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12345677889999999766543
No 34
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.25 E-value=1.2 Score=39.83 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=54.7
Q ss_pred CceeeEeccccc-h-HHHHHHHHhhcC-CCCCcEEEEEeCccccc-ccc-CccceEEeCCCChhHHHHH-------HHHh
Q 045634 169 MKVLIVLDDVHD-E-FTELKSLARRLQ-FSGRSRIIITSRDKGVL-DKC-GVNNMYEVKGLKYNKALEL-------FCRK 236 (353)
Q Consensus 169 kr~LlVLDdv~~-~-~~~~~~l~~~~~-~~~gs~IivTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~L-------f~~~ 236 (353)
++-++++|+++. . ....+.+...+. ...+.++|+||....-. ..+ .....+++++++.++-.++ +...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~ 184 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEI 184 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 678999999998 2 335555655554 44567888887654421 111 1124789999998874333 2222
Q ss_pred hhccCCCCccHHHHHHHHHHHcCCChHH
Q 045634 237 AFRETNCSHDLLELSEEVVRHADGNPLA 264 (353)
Q Consensus 237 a~~~~~~~~~~~~~~~~i~~~c~glPLa 264 (353)
+....... ...+....+++.++|.+-.
T Consensus 185 ~~~~~~~~-~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 185 CKHEGIAI-ADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HHHHTCCB-SCHHHHHHHHHHTCSCTTH
T ss_pred HHHcCCCC-CcHHHHHHHHHhCCCCHHH
Confidence 21111111 1126677788888886653
No 35
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.94 E-value=1.2 Score=42.18 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=76.4
Q ss_pred EEeEEe--ecCCcccccccccc-cccceecccCCchHHHHHHHHHHhhccCCCCCchHHHHHHHHhcCceeeEeccccc-
Q 045634 105 VIPVFY--QVDPSDVRKQRRSF-GEAFVHHENNFPDKVQKWRDALTEASNLSGYDSTESRIKKRLQLMKVLIVLDDVHD- 180 (353)
Q Consensus 105 vipI~g--gVgkt~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~l~~~L~~kr~LlVLDdv~~- 180 (353)
-+-++| |+|||.+.+..... ...|....... .....+++.+.... .....+++.+|++|+++.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-~~~~~ir~~~~~a~------------~~~~~~~~~iLfIDEI~~l 118 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADVERISAVT-SGVKEIREAIERAR------------QNRNAGRRTILFVDEVHRF 118 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-CCHHHHHHHHHHHH------------HHHHTTCCEEEEEETTTCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHHH------------HhhhcCCCcEEEEeChhhh
Confidence 455666 99999776654322 23343332111 11223333332211 011135678999999987
Q ss_pred hHHHHHHHHhhcCCCCCcEEEE-EeCccc--ccccc-CccceEEeCCCChhHHHHHHHHhhhccC-----CCCccHHHHH
Q 045634 181 EFTELKSLARRLQFSGRSRIII-TSRDKG--VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRET-----NCSHDLLELS 251 (353)
Q Consensus 181 ~~~~~~~l~~~~~~~~gs~Iiv-TTR~~~--v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~ 251 (353)
.....+.+...+..+. ..+|. ||.+.. +...+ .-...+.+++++.++-.+++...+-... ....-..+..
T Consensus 119 ~~~~q~~LL~~le~~~-v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al 197 (447)
T 3pvs_A 119 NKSQQDAFLPHIEDGT-ITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETR 197 (447)
T ss_dssp ------CCHHHHHTTS-CEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHH
T ss_pred CHHHHHHHHHHHhcCc-eEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHH
Confidence 2333444444433222 23333 555542 11111 1234788999999999999887764311 1111234567
Q ss_pred HHHHHHcCCChHHHHH
Q 045634 252 EEVVRHADGNPLALEV 267 (353)
Q Consensus 252 ~~i~~~c~glPLal~~ 267 (353)
..+++.++|.+-.+.-
T Consensus 198 ~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 198 RAIAELVNGDARRALN 213 (447)
T ss_dssp HHHHHHHCSCHHHHHH
T ss_pred HHHHHHCCCCHHHHHH
Confidence 7788889888765543
No 36
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.77 E-value=1.3 Score=42.66 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=57.4
Q ss_pred cCceeeEeccccc-h---HHHHHHHHhhcCCCCCcEEEEEeCccc---cccccCccceEEeCCCChhHHHHHHHHhhhcc
Q 045634 168 LMKVLIVLDDVHD-E---FTELKSLARRLQFSGRSRIIITSRDKG---VLDKCGVNNMYEVKGLKYNKALELFCRKAFRE 240 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~---~~~~~~l~~~~~~~~gs~IivTTR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 240 (353)
+++.+|++|+++. . ...+..+...+.. .+..||+++.+.. +.........+.+++++.++..+.+...+...
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~ 225 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIRE 225 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 5678999999976 1 2223444433321 2334555554422 22212234578999999999999888776543
Q ss_pred CCCCccHHHHHHHHHHHcCC-ChHHHHHHh
Q 045634 241 TNCSHDLLELSEEVVRHADG-NPLALEVLA 269 (353)
Q Consensus 241 ~~~~~~~~~~~~~i~~~c~g-lPLal~~~g 269 (353)
.... ..+....|++.++| ++-++..+.
T Consensus 226 ~~~i--~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 226 KFKL--DPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TCCC--CTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCC--CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3111 12346778888988 455555553
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.04 E-value=1.6 Score=37.80 Aligned_cols=87 Identities=20% Similarity=0.209 Sum_probs=47.7
Q ss_pred hcCceeeEeccccchH------------HHHHHHHhhcC----CCCCcEEEEEeCccccccc---c-CccceEEeCCCCh
Q 045634 167 QLMKVLIVLDDVHDEF------------TELKSLARRLQ----FSGRSRIIITSRDKGVLDK---C-GVNNMYEVKGLKY 226 (353)
Q Consensus 167 ~~kr~LlVLDdv~~~~------------~~~~~l~~~~~----~~~gs~IivTTR~~~v~~~---~-~~~~~~~l~~L~~ 226 (353)
..+..+|+||+++. . ...+.+...+. .+....||.||........ . .....+++++++.
T Consensus 122 ~~~~~vl~iDEid~-l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~ 200 (272)
T 1d2n_A 122 KSQLSCVVVDDIER-LLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT 200 (272)
T ss_dssp TSSEEEEEECCHHH-HTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEE
T ss_pred hcCCcEEEEEChhh-hhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccH
Confidence 35678999999864 2 22333433332 2223446667766533222 1 1245688888887
Q ss_pred -hHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCC
Q 045634 227 -NKALELFCRKAFRETNCSHDLLELSEEVVRHADGN 261 (353)
Q Consensus 227 -~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~gl 261 (353)
++-.+++.... .. ..+....+++.+.|.
T Consensus 201 r~~i~~i~~~~~----~~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 201 GEQLLEALELLG----NF---KDKERTTIAQQVKGK 229 (272)
T ss_dssp HHHHHHHHHHHT----CS---CHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcC----CC---CHHHHHHHHHHhcCC
Confidence 55555554421 11 234566777777773
No 38
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.66 E-value=1.1 Score=39.98 Aligned_cols=90 Identities=13% Similarity=0.071 Sum_probs=53.7
Q ss_pred CceeeEeccccchH----HHHHHHHhhcC--CCCCcEEEEEeCcccc-----c----cccCccceEEeCCCChhHHHHHH
Q 045634 169 MKVLIVLDDVHDEF----TELKSLARRLQ--FSGRSRIIITSRDKGV-----L----DKCGVNNMYEVKGLKYNKALELF 233 (353)
Q Consensus 169 kr~LlVLDdv~~~~----~~~~~l~~~~~--~~~gs~IivTTR~~~v-----~----~~~~~~~~~~l~~L~~~ea~~Lf 233 (353)
+.-+|++|++.. . ...+.+...+. ...|..||+||....- . ..+.....+++++ +.++-.+++
T Consensus 98 ~~~vL~iDEi~~-l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 98 SVDLLLLDDVQF-LSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 175 (324)
T ss_dssp TCSEEEEECGGG-GTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHH
T ss_pred CCCEEEEcCccc-ccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHH
Confidence 467899999976 2 22233333332 2346678888864321 1 1112235689999 999999999
Q ss_pred HHhhhccCCCCccHHHHHHHHHHHcCCChH
Q 045634 234 CRKAFRETNCSHDLLELSEEVVRHADGNPL 263 (353)
Q Consensus 234 ~~~a~~~~~~~~~~~~~~~~i~~~c~glPL 263 (353)
...+...... -..+....+++.+ |.+-
T Consensus 176 ~~~~~~~~~~--l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 176 KEKLKEFNLE--LRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHTTCC--CCHHHHHHHHHHC-SSHH
T ss_pred HHHHHhcCCC--CCHHHHHHHHHhC-CCHH
Confidence 8877432221 1245566777777 6654
No 39
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.26 E-value=2.4 Score=38.14 Aligned_cols=101 Identities=8% Similarity=0.115 Sum_probs=65.6
Q ss_pred hcCceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCC
Q 045634 167 QLMKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETN 242 (353)
Q Consensus 167 ~~kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 242 (353)
..++-+++||++.. +....+.+...+. ...+..+|++|.+.. +...+ .....+++++++.++..+.+...+-....
T Consensus 132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 132 AHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp --CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 34667899999987 3444556666555 556778888886643 22222 12357899999999999998877633221
Q ss_pred CCccH-HHHHHHHHHHcCCChHHHHHHh
Q 045634 243 CSHDL-LELSEEVVRHADGNPLALEVLA 269 (353)
Q Consensus 243 ~~~~~-~~~~~~i~~~c~glPLal~~~g 269 (353)
. -. .+....|++.++|.+-.+..+.
T Consensus 212 ~--~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 212 Q--LETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp E--ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred C--CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 11 3566788899999887654433
No 40
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=87.90 E-value=1.5 Score=39.10 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=50.0
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCcc-ccccccCccceEEeCCCChhHHHHHHHHhh
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDK-GVLDKCGVNNMYEVKGLKYNKALELFCRKA 237 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~-~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 237 (353)
++-++|+|+++. .....+.++..+. ..+.+.+|++|.++ .+...+... .+++.+++.++..+.+....
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 566889999986 3456677777776 66677787777554 344444444 89999999999999888765
No 41
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.07 E-value=0.6 Score=39.27 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=58.6
Q ss_pred cCceeeEeccccc-hHHH--HHHHHhhcC--CCCCc-EEEEEeCcccc-cccc--------CccceEEeCCCChhHHHHH
Q 045634 168 LMKVLIVLDDVHD-EFTE--LKSLARRLQ--FSGRS-RIIITSRDKGV-LDKC--------GVNNMYEVKGLKYNKALEL 232 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~~~~--~~~l~~~~~--~~~gs-~IivTTR~~~v-~~~~--------~~~~~~~l~~L~~~ea~~L 232 (353)
.+.-+||+||++. .... .+.+...+. ...+. ++|+||+...- .... .....+++++++.++..++
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~ 182 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAA 182 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHH
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHH
Confidence 3467899999976 1111 333333322 11222 47777764321 1111 1126789999999999999
Q ss_pred HHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 045634 233 FCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVL 268 (353)
Q Consensus 233 f~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 268 (353)
+...+..... .-..+....+++.++|.+-.+..+
T Consensus 183 l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 183 LQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHH
Confidence 9887643221 122456778888999988766543
No 42
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=82.63 E-value=13 Score=33.12 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=38.6
Q ss_pred cCceeeEeccccc--hHHHHHHHHhhcCCCCCc--EEEEEeCcccccc-cc------Cc-cceEEeCCCChhHHHHHHHH
Q 045634 168 LMKVLIVLDDVHD--EFTELKSLARRLQFSGRS--RIIITSRDKGVLD-KC------GV-NNMYEVKGLKYNKALELFCR 235 (353)
Q Consensus 168 ~kr~LlVLDdv~~--~~~~~~~l~~~~~~~~gs--~IivTTR~~~v~~-~~------~~-~~~~~l~~L~~~ea~~Lf~~ 235 (353)
+++++++||.++. ..+.+-.+... +...++ .||.++....... .+ .. ...+.+++.+.++-.+++..
T Consensus 131 ~~~~ii~lDE~d~l~~q~~L~~l~~~-~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~ 209 (318)
T 3te6_A 131 KRKTLILIQNPENLLSEKILQYFEKW-ISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIIT 209 (318)
T ss_dssp SCEEEEEEECCSSSCCTHHHHHHHHH-HHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHH
T ss_pred CCceEEEEecHHHhhcchHHHHHHhc-ccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHH
Confidence 4578999999987 12222222221 111222 3333443332211 11 01 24688999999999999887
Q ss_pred hhh
Q 045634 236 KAF 238 (353)
Q Consensus 236 ~a~ 238 (353)
++-
T Consensus 210 Rl~ 212 (318)
T 3te6_A 210 RLK 212 (318)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 43
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=79.21 E-value=34 Score=30.37 Aligned_cols=126 Identities=10% Similarity=0.068 Sum_probs=71.7
Q ss_pred ceEEeCCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChHHHHHHhhc--cccccc---cCCCchHHHHHHh-
Q 045634 217 NMYEVKGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPLALEVLANN--NGKLMK---LISEPNIYNVLKI- 290 (353)
Q Consensus 217 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPLal~~~g~~--~~~~l~---~~~~~~v~~~l~~- 290 (353)
....+++.+.++-.+++.+.+-... .....+.+..|++.+.|.|-.+.-+-.. ...... ....+.+..++..
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 3578999999999999988763221 1233567888999999999755333222 111111 1122233443332
Q ss_pred --hhccCCHhHHHHHhhhhc-cCC-CCCHHHHHHHHhcC-----chHH-HHhhCCCcEee-CCeE
Q 045634 291 --SYDELNLEEKKTFLDIAC-FFT-GEDIDFVRRIRDDP-----SSLD-TFVDKSLITIF-YNEL 344 (353)
Q Consensus 291 --sy~~L~~~~k~~fl~la~-fp~-~~~~~~l~~~w~~~-----~~l~-~L~~~sLl~~~-~~~~ 344 (353)
....|+...+..+..++- |-. +...+.+....... +.++ .|...+||+.. .|++
T Consensus 251 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g~i~~~~~gr~ 315 (334)
T 1in4_A 251 NIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRI 315 (334)
T ss_dssp TCCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEE
T ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHcCCeecccccHH
Confidence 223566666666554443 322 23555555554444 2222 88899999987 6664
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=77.88 E-value=31 Score=32.17 Aligned_cols=102 Identities=12% Similarity=0.101 Sum_probs=58.2
Q ss_pred hcCceeeEeccccchH-------------HHHHHHHhhcC-C---CCCcEEEEEeCccccccc-c--CccceEEeCCCCh
Q 045634 167 QLMKVLIVLDDVHDEF-------------TELKSLARRLQ-F---SGRSRIIITSRDKGVLDK-C--GVNNMYEVKGLKY 226 (353)
Q Consensus 167 ~~kr~LlVLDdv~~~~-------------~~~~~l~~~~~-~---~~gs~IivTTR~~~v~~~-~--~~~~~~~l~~L~~ 226 (353)
..+..+|+||+++. . .....+...+. . ..+..||.||........ + .....+.++..+.
T Consensus 225 ~~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~ 303 (444)
T 2zan_A 225 ENKPSIIFIDEIDS-LCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEA 303 (444)
T ss_dssp HSCSEEEEESCTTT-TCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCH
T ss_pred HcCCeEEEEechHh-hccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCH
Confidence 34678999999985 2 12334444333 1 234556667755432211 0 1345678888888
Q ss_pred hHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCC-ChHHHHHHhhc
Q 045634 227 NKALELFCRKAFRETNCSHDLLELSEEVVRHADG-NPLALEVLANN 271 (353)
Q Consensus 227 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~g~~ 271 (353)
++-..+|......... .-.......|++.+.| .+-.|..+...
T Consensus 304 ~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~~~ 347 (444)
T 2zan_A 304 HARAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGADISIIVRD 347 (444)
T ss_dssp HHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 8888888877632221 1123456678888888 45455554433
No 45
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=77.10 E-value=2.1 Score=33.24 Aligned_cols=37 Identities=14% Similarity=-0.011 Sum_probs=23.2
Q ss_pred ceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCc
Q 045634 170 KVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRD 206 (353)
Q Consensus 170 r~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~ 206 (353)
.-.|+||+++. .......+...+. .....++|.||..
T Consensus 77 ~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 77 GGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 45789999987 3334445555444 4455678877754
No 46
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=76.68 E-value=1.9 Score=34.66 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=22.2
Q ss_pred CceeeEeccccc-hHHHH--HHHHhhcC--CCCCcEEEEEeCcc
Q 045634 169 MKVLIVLDDVHD-EFTEL--KSLARRLQ--FSGRSRIIITSRDK 207 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~--~~l~~~~~--~~~gs~IivTTR~~ 207 (353)
+.-+||||++.. ..+.| +.+...+. ...|..+|+||...
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 456899999973 12222 22322222 23567888888643
No 47
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=75.39 E-value=9.8 Score=33.98 Aligned_cols=98 Identities=9% Similarity=-0.030 Sum_probs=64.6
Q ss_pred cCceeeEeccccc--hHHHHHHHHhhcC-CCCCcEEEEEeCc-------ccccccc-CccceEEeCCCChhHHHHHHHHh
Q 045634 168 LMKVLIVLDDVHD--EFTELKSLARRLQ-FSGRSRIIITSRD-------KGVLDKC-GVNNMYEVKGLKYNKALELFCRK 236 (353)
Q Consensus 168 ~kr~LlVLDdv~~--~~~~~~~l~~~~~-~~~gs~IivTTR~-------~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 236 (353)
+++-++|+|+++. ....++.+...+. ..+++.+|++|.. +.+...+ .....++..+++.++-.+.+...
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 4566788898753 2567777877777 6677878777643 1233332 23467899999999988877776
Q ss_pred hhccCCCCccHHHHHHHHHHHcCCChHHHHH
Q 045634 237 AFRETNCSHDLLELSEEVVRHADGNPLALEV 267 (353)
Q Consensus 237 a~~~~~~~~~~~~~~~~i~~~c~glPLal~~ 267 (353)
+-... ..-..+.+..+++.++|.+..+..
T Consensus 155 ~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLN--LELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTT--CEECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcC--CCCCHHHHHHHHHHhchHHHHHHH
Confidence 63222 122346677888888988877654
No 48
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=75.02 E-value=9.7 Score=33.23 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=18.1
Q ss_pred HHHHHhc-CceeeEeccccc-hHHHHHHHHhhc
Q 045634 162 IKKRLQL-MKVLIVLDDVHD-EFTELKSLARRL 192 (353)
Q Consensus 162 l~~~L~~-kr~LlVLDdv~~-~~~~~~~l~~~~ 192 (353)
+...+.. ..-+++||+++. .......+...+
T Consensus 111 ~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 111 LTEAVRRRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp HHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 4444433 346899999986 344455555443
No 49
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.96 E-value=36 Score=28.50 Aligned_cols=100 Identities=9% Similarity=0.125 Sum_probs=55.2
Q ss_pred hcCceeeEeccccchH-----------------HHHHHHHhhcC---CCCCcEEEEEeCcccccc-cc----CccceEEe
Q 045634 167 QLMKVLIVLDDVHDEF-----------------TELKSLARRLQ---FSGRSRIIITSRDKGVLD-KC----GVNNMYEV 221 (353)
Q Consensus 167 ~~kr~LlVLDdv~~~~-----------------~~~~~l~~~~~---~~~gs~IivTTR~~~v~~-~~----~~~~~~~l 221 (353)
.....+|+||+++. . ..+..+...+. ...+..||.||....... .. .....+.+
T Consensus 96 ~~~~~vl~iDeid~-l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i 174 (262)
T 2qz4_A 96 ARAPCIVYIDEIDA-VGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFI 174 (262)
T ss_dssp HTCSEEEEEECC--------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEEC
T ss_pred hcCCeEEEEeCcch-hhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEe
Confidence 34578999999986 2 11223333222 123456666665543211 11 12457889
Q ss_pred CCCChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 045634 222 KGLKYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPL-ALEVL 268 (353)
Q Consensus 222 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPL-al~~~ 268 (353)
+..+.++-.+++...+..... ..........+++.+.|.+- .|..+
T Consensus 175 ~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 175 DLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 999999999998887643221 22222335778888888754 45433
No 50
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=71.97 E-value=34 Score=29.24 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=56.8
Q ss_pred hcCceeeEeccccchH----------------HHHHHHHhhcC---CCCCcEEEEEeCccccccc-----cCccceEEeC
Q 045634 167 QLMKVLIVLDDVHDEF----------------TELKSLARRLQ---FSGRSRIIITSRDKGVLDK-----CGVNNMYEVK 222 (353)
Q Consensus 167 ~~kr~LlVLDdv~~~~----------------~~~~~l~~~~~---~~~gs~IivTTR~~~v~~~-----~~~~~~~~l~ 222 (353)
..+..+|+||+++. . ..+..+...+. ...+..||.||........ ......+.++
T Consensus 108 ~~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~ 186 (285)
T 3h4m_A 108 EKAPSIIFIDEIDA-IAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVP 186 (285)
T ss_dssp HTCSEEEEEETTHH-HHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECC
T ss_pred HcCCeEEEEECHHH-hcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEEC
Confidence 34567999999975 2 12222332221 2345667777765543221 1123478999
Q ss_pred CCChhHHHHHHHHhhhccCCC-CccHHHHHHHHHHHcCC-ChHHHHHHhh
Q 045634 223 GLKYNKALELFCRKAFRETNC-SHDLLELSEEVVRHADG-NPLALEVLAN 270 (353)
Q Consensus 223 ~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~c~g-lPLal~~~g~ 270 (353)
..+.++-.+++...+...... ... ...++..+.| .|-.+..+..
T Consensus 187 ~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 187 APDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp CCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHHHHH
Confidence 999999999998876433211 112 3556666666 4555554433
No 51
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=70.53 E-value=2.5 Score=33.62 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=33.1
Q ss_pred cCceeeEeccccchHH---------H-HHHHHhhcCCCCCcEEEEEeCccccc------ccc-CccceEEeCCCChhHHH
Q 045634 168 LMKVLIVLDDVHDEFT---------E-LKSLARRLQFSGRSRIIITSRDKGVL------DKC-GVNNMYEVKGLKYNKAL 230 (353)
Q Consensus 168 ~kr~LlVLDdv~~~~~---------~-~~~l~~~~~~~~gs~IivTTR~~~v~------~~~-~~~~~~~l~~L~~~ea~ 230 (353)
+++.+|+|||++. .. . .+.+...+. ..+..+|.||...... ..+ ..-..+.+.+++.++..
T Consensus 114 ~~~~vl~iDe~~~-l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~ 191 (195)
T 1jbk_A 114 EGNVILFIDELHT-MVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTI 191 (195)
T ss_dssp TTTEEEEEETGGG-GTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHH
T ss_pred CCCeEEEEeCHHH-HhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHH
Confidence 4577999999986 21 1 222222221 2344566666554321 111 11125778888877765
Q ss_pred HH
Q 045634 231 EL 232 (353)
Q Consensus 231 ~L 232 (353)
++
T Consensus 192 ~i 193 (195)
T 1jbk_A 192 AI 193 (195)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 52
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=66.23 E-value=65 Score=27.91 Aligned_cols=93 Identities=11% Similarity=0.155 Sum_probs=52.2
Q ss_pred hcCceeeEeccccchHH----------------HHHHHHhhcC---CCCCcEEEEEeCcccccc-cc----CccceEEeC
Q 045634 167 QLMKVLIVLDDVHDEFT----------------ELKSLARRLQ---FSGRSRIIITSRDKGVLD-KC----GVNNMYEVK 222 (353)
Q Consensus 167 ~~kr~LlVLDdv~~~~~----------------~~~~l~~~~~---~~~gs~IivTTR~~~v~~-~~----~~~~~~~l~ 222 (353)
.....+|+||+++. .. ....+...+. ...+..||.||....... .. .....+.++
T Consensus 106 ~~~p~il~iDEid~-l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~ 184 (301)
T 3cf0_A 106 QAAPCVLFFDELDS-IAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 184 (301)
T ss_dssp HTCSEEEEECSTTH-HHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECC
T ss_pred hcCCeEEEEEChHH-HhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecC
Confidence 44678999999985 21 1233433332 223456777776543221 11 234578899
Q ss_pred CCChhHHHHHHHHhhhccCC-CCccHHHHHHHHHHHcCCChHH
Q 045634 223 GLKYNKALELFCRKAFRETN-CSHDLLELSEEVVRHADGNPLA 264 (353)
Q Consensus 223 ~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~c~glPLa 264 (353)
..+.++-.+++....-.... ....+ ..++..+.|.|-+
T Consensus 185 ~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 185 LPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp CCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 99999888888776532221 11223 3455567776543
No 53
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=64.11 E-value=19 Score=27.50 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=22.2
Q ss_pred ceeeEeccccc-hHHHHHHHHhhcC--CCCCcEEEEEeCc
Q 045634 170 KVLIVLDDVHD-EFTELKSLARRLQ--FSGRSRIIITSRD 206 (353)
Q Consensus 170 r~LlVLDdv~~-~~~~~~~l~~~~~--~~~gs~IivTTR~ 206 (353)
.-.|+||+++. .......+...+. ...+.++|.||..
T Consensus 76 ~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 76 GGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 35789999987 3334444544443 2345678877743
No 54
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.90 E-value=47 Score=29.35 Aligned_cols=95 Identities=11% Similarity=0.124 Sum_probs=59.2
Q ss_pred CceeeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEeCccc-ccccc-CccceEEeCCCChhHHHHHHHHhhhccCCCC
Q 045634 169 MKVLIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITSRDKG-VLDKC-GVNNMYEVKGLKYNKALELFCRKAFRETNCS 244 (353)
Q Consensus 169 kr~LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 244 (353)
.+-++|+|+++. .....+.+...+. ....+++|++|.... +...+ .....+++.+++.++..+.+...+-....
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~-- 187 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKL-- 187 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTC--
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCC--
Confidence 467889999975 2344556665555 556677777775432 21111 11246889999999988887766522111
Q ss_pred ccHHHHHHHHHHHcCCChHHH
Q 045634 245 HDLLELSEEVVRHADGNPLAL 265 (353)
Q Consensus 245 ~~~~~~~~~i~~~c~glPLal 265 (353)
.-..+....+++.++|.+--+
T Consensus 188 ~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 188 KLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CBCHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHH
Confidence 122456778888999988743
No 55
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=61.48 E-value=35 Score=30.36 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=56.4
Q ss_pred eeeEeccccc-hHHHHHHHHhhcCCCCCcEEEEEeCc-c------------cccccc-CccceEEeCCCChhHHHHHHHH
Q 045634 171 VLIVLDDVHD-EFTELKSLARRLQFSGRSRIIITSRD-K------------GVLDKC-GVNNMYEVKGLKYNKALELFCR 235 (353)
Q Consensus 171 ~LlVLDdv~~-~~~~~~~l~~~~~~~~gs~IivTTR~-~------------~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~ 235 (353)
.+|++|+++. .....+.+...+.......++++|.. . .+...+ .--..+.+++++.++..+++..
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRI 270 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 4999999987 34555666655552222234444431 1 010000 1113579999999999999987
Q ss_pred hhhccCCCCccHHHHHHHHHHHcC-CChHHHHHH
Q 045634 236 KAFRETNCSHDLLELSEEVVRHAD-GNPLALEVL 268 (353)
Q Consensus 236 ~a~~~~~~~~~~~~~~~~i~~~c~-glPLal~~~ 268 (353)
.+-.... .-..+....+++.+. |.|-.+..+
T Consensus 271 ~~~~~~~--~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 271 RCEEEDV--EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp HHHHTTC--CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHcCC--CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 7643221 123456778888887 777655433
No 56
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=57.70 E-value=94 Score=27.69 Aligned_cols=101 Identities=12% Similarity=0.144 Sum_probs=58.3
Q ss_pred cCceeeEeccccchH-------------HHHHHHHhhcC-----CCCCcEEEEEeCcccccc-cc--CccceEEeCCCCh
Q 045634 168 LMKVLIVLDDVHDEF-------------TELKSLARRLQ-----FSGRSRIIITSRDKGVLD-KC--GVNNMYEVKGLKY 226 (353)
Q Consensus 168 ~kr~LlVLDdv~~~~-------------~~~~~l~~~~~-----~~~gs~IivTTR~~~v~~-~~--~~~~~~~l~~L~~ 226 (353)
.++.+|+||+++. . .....+...+. ...+..||.||....... .. .....+.+...+.
T Consensus 175 ~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~ 253 (357)
T 3d8b_A 175 QQPAVIFIDEIDS-LLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEA 253 (357)
T ss_dssp TCSEEEEEETHHH-HTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCH
T ss_pred cCCeEEEEeCchh-hhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCH
Confidence 4578999999964 2 12233333222 123445565665433211 11 1234678888899
Q ss_pred hHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCC-ChHHHHHHhhc
Q 045634 227 NKALELFCRKAFRETNCSHDLLELSEEVVRHADG-NPLALEVLANN 271 (353)
Q Consensus 227 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~g~~ 271 (353)
++-.+++...+-..... -..+....+++.+.| .|-.|..+...
T Consensus 254 ~~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 254 SARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 98888887766322211 123566778888888 56677776655
No 57
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=57.54 E-value=31 Score=29.88 Aligned_cols=68 Identities=9% Similarity=0.091 Sum_probs=46.6
Q ss_pred CceeeEeccccc----------hHHHHHHHHhhcC-CCCCcEEEEEeCccc----------cccccCccceEEeCCCChh
Q 045634 169 MKVLIVLDDVHD----------EFTELKSLARRLQ-FSGRSRIIITSRDKG----------VLDKCGVNNMYEVKGLKYN 227 (353)
Q Consensus 169 kr~LlVLDdv~~----------~~~~~~~l~~~~~-~~~gs~IivTTR~~~----------v~~~~~~~~~~~l~~L~~~ 227 (353)
+.-+|++|+++. .......+...+. ...+..+|.||.... +... ....+.+++++.+
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~ 207 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDE 207 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHH
Confidence 356999999982 1445566666665 566778888875432 2221 2367899999999
Q ss_pred HHHHHHHHhhh
Q 045634 228 KALELFCRKAF 238 (353)
Q Consensus 228 ea~~Lf~~~a~ 238 (353)
+-.+++...+-
T Consensus 208 ~~~~il~~~l~ 218 (309)
T 3syl_A 208 ELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 58
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=53.78 E-value=47 Score=25.29 Aligned_cols=52 Identities=6% Similarity=-0.015 Sum_probs=35.7
Q ss_pred CCCceeE-EEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHh
Q 045634 12 GHSKYKV-FLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAV 67 (353)
Q Consensus 12 ~~~~~dv-FiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i 67 (353)
.....+| .|.-+ |....++..+...|...|+++=+|.. .+++++...|.++-
T Consensus 5 ~~~P~Qv~IlpVs--~~~~~YA~~V~~~L~~~GiRvevD~~--r~~e~Lg~kIR~a~ 57 (130)
T 1v95_A 5 SSGPVDCSVIVVN--KQTKDYAESVGRKVRDLGMVVDLIFL--NTEVSLSQALEDVS 57 (130)
T ss_dssp CCCCCTEEEEESS--SGGGHHHHHHHHHHHTTTCCEEEEEC--TTSSCHHHHHHHHH
T ss_pred CCCCCeEEEEEeC--cchHHHHHHHHHHHHHCCCEEEEecC--CCCCcHHHHHHHHH
Confidence 3444555 45543 33456999999999999999988751 22677777776653
No 59
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=49.74 E-value=82 Score=29.23 Aligned_cols=94 Identities=14% Similarity=0.041 Sum_probs=56.2
Q ss_pred eeEeccccc-hHHHHHHHHhhcC-CCCCcEEEEEe---------Cc----c-cccc-ccCccceEEeCCCChhHHHHHHH
Q 045634 172 LIVLDDVHD-EFTELKSLARRLQ-FSGRSRIIITS---------RD----K-GVLD-KCGVNNMYEVKGLKYNKALELFC 234 (353)
Q Consensus 172 LlVLDdv~~-~~~~~~~l~~~~~-~~~gs~IivTT---------R~----~-~v~~-~~~~~~~~~l~~L~~~ea~~Lf~ 234 (353)
++++|+++. .....+.+...+. .... -+|+.| .+ + .+.. ...-...+.+.+++.++..+.+.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 889999986 4566777777766 4334 344344 11 1 0100 00112357999999999999998
Q ss_pred HhhhccCCCCccHHHHHHHHHHHc-CCChHHHHHH
Q 045634 235 RKAFRETNCSHDLLELSEEVVRHA-DGNPLALEVL 268 (353)
Q Consensus 235 ~~a~~~~~~~~~~~~~~~~i~~~c-~glPLal~~~ 268 (353)
..+-.... .-..+....|++.+ .|.|-....+
T Consensus 377 ~~~~~~~~--~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 377 IRAQTEGI--NISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHTC--CBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHhCC--CCCHHHHHHHHHHccCCCHHHHHHH
Confidence 77632111 12245567788888 7887755443
No 60
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=48.68 E-value=32 Score=26.49 Aligned_cols=62 Identities=10% Similarity=0.177 Sum_probs=39.7
Q ss_pred EEEeccccccccchHHHHHHHHHhCCcceeecc-------------ccc---cCC-C-CccHHHHHHhhhcCeEEeeecc
Q 045634 18 VFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDD-------------EEL---EKG-D-EISPALFIAVETSDISVIILSK 79 (353)
Q Consensus 18 vFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~-------------~~~---~~g-~-~~~~~i~~~i~~s~~~i~v~S~ 79 (353)
||||.+..| +.-+..+...|...|++.+--. ..+ ..| + .-.++|.+.|++-++.+++..+
T Consensus 27 vliSv~d~d--K~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSF--RPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGG--HHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccc--hHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 999998877 4456667888888898876321 011 111 1 0004577888888888888777
Q ss_pred Cc
Q 045634 80 DY 81 (353)
Q Consensus 80 ~~ 81 (353)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 61
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=47.89 E-value=13 Score=30.68 Aligned_cols=48 Identities=25% Similarity=0.363 Sum_probs=28.1
Q ss_pred HHHHHHhcCce-eeEeccccc----hHHHHHHHHhhcC-CCCCcEEEEEeCccc
Q 045634 161 RIKKRLQLMKV-LIVLDDVHD----EFTELKSLARRLQ-FSGRSRIIITSRDKG 208 (353)
Q Consensus 161 ~l~~~L~~kr~-LlVLDdv~~----~~~~~~~l~~~~~-~~~gs~IivTTR~~~ 208 (353)
.+++.+.+.+| |||||.+.. ..-..+.+...+. ...+..||+|+|+..
T Consensus 111 ~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 111 HGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 44555544444 999999843 0112233333333 345678999999864
No 62
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=45.81 E-value=1.5e+02 Score=25.77 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=57.9
Q ss_pred cCceeeEeccccchH-------------HHHHHHHhhcC----CCCCcEEEEEeCccccccc-c--CccceEEeCCCChh
Q 045634 168 LMKVLIVLDDVHDEF-------------TELKSLARRLQ----FSGRSRIIITSRDKGVLDK-C--GVNNMYEVKGLKYN 227 (353)
Q Consensus 168 ~kr~LlVLDdv~~~~-------------~~~~~l~~~~~----~~~gs~IivTTR~~~v~~~-~--~~~~~~~l~~L~~~ 227 (353)
.+..+|+||+++. . .....+...+. ...+..||.||........ + .....+.++..+.+
T Consensus 109 ~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~ 187 (322)
T 3eie_A 109 NKPSIIFIDQVDA-LTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLA 187 (322)
T ss_dssp TSSEEEEEECGGG-GSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHH
T ss_pred cCCeEEEechhhh-hhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHH
Confidence 4567999999985 2 11233333322 2344556667765433211 1 13456788889999
Q ss_pred HHHHHHHHhhhccCCCCccHHHHHHHHHHHcCC-ChHHHHHHhh
Q 045634 228 KALELFCRKAFRETNCSHDLLELSEEVVRHADG-NPLALEVLAN 270 (353)
Q Consensus 228 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~g~ 270 (353)
+-.++|...+...... -.......+++.+.| .+-.|..+..
T Consensus 188 ~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 188 ARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp HHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999998877432211 123456678888877 4555555443
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=42.07 E-value=52 Score=29.96 Aligned_cols=55 Identities=15% Similarity=0.263 Sum_probs=34.3
Q ss_pred HHhcCc--eeeEeccccc--hHHHHHHHHhhcC-CCCCcEEEEEeCccccccccCccceEEe
Q 045634 165 RLQLMK--VLIVLDDVHD--EFTELKSLARRLQ-FSGRSRIIITSRDKGVLDKCGVNNMYEV 221 (353)
Q Consensus 165 ~L~~kr--~LlVLDdv~~--~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~~~~~~~~~l 221 (353)
.|-.+. -+|+||++.. +....+.+...+. ...|..||++|-+..++.. .++++.+
T Consensus 309 ~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~--~d~i~~l 368 (415)
T 4aby_A 309 STVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR--AHHHYKV 368 (415)
T ss_dssp HHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred HHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh--cCeEEEE
Confidence 344445 7899999986 3444444544444 3357789989988877653 3444444
No 64
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=40.91 E-value=2e+02 Score=25.77 Aligned_cols=101 Identities=16% Similarity=0.099 Sum_probs=55.9
Q ss_pred cCceeeEeccccchH-------------HHHHHHHhhcC-----CCCCcEEEEEeCcccccc-cc--CccceEEeCCCCh
Q 045634 168 LMKVLIVLDDVHDEF-------------TELKSLARRLQ-----FSGRSRIIITSRDKGVLD-KC--GVNNMYEVKGLKY 226 (353)
Q Consensus 168 ~kr~LlVLDdv~~~~-------------~~~~~l~~~~~-----~~~gs~IivTTR~~~v~~-~~--~~~~~~~l~~L~~ 226 (353)
....+|+||+++. . .....+...+. ......||.||....... .+ .....+.+...+.
T Consensus 206 ~~~~il~iDEid~-l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~ 284 (389)
T 3vfd_A 206 LQPSIIFIDQVDS-LLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNE 284 (389)
T ss_dssp SSSEEEEEETGGG-GC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCH
T ss_pred cCCeEEEEECchh-hcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCH
Confidence 3457999999974 2 11222222221 122345555665433221 11 1234678888999
Q ss_pred hHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChH-HHHHHhhc
Q 045634 227 NKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPL-ALEVLANN 271 (353)
Q Consensus 227 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPL-al~~~g~~ 271 (353)
++-.+++...+-..... -..+....+++.+.|..- +|..+...
T Consensus 285 ~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L~~~ 328 (389)
T 3vfd_A 285 ETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTALAKD 328 (389)
T ss_dssp HHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999988776332211 123456788888888544 66666554
No 65
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=40.71 E-value=24 Score=24.03 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCcceeecccccc---CCCCccHHHHHHhhhcC
Q 045634 32 TSHLAAALHRKQIQFFIDDEELE---KGDEISPALFIAVETSD 71 (353)
Q Consensus 32 ~~~l~~~L~~~g~~~~~d~~~~~---~g~~~~~~i~~~i~~s~ 71 (353)
+..|...|.++||+.|.+.+.+. |-..+.+++...+.+.|
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 34577889999999999986653 33456677776665543
No 66
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.87 E-value=1.7e+02 Score=26.87 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=52.1
Q ss_pred cCceeeEeccccc-h--------------HHHHHHHHhhcC---CCCCcEEEEEeCccccccc-----cCccceEEeCCC
Q 045634 168 LMKVLIVLDDVHD-E--------------FTELKSLARRLQ---FSGRSRIIITSRDKGVLDK-----CGVNNMYEVKGL 224 (353)
Q Consensus 168 ~kr~LlVLDdv~~-~--------------~~~~~~l~~~~~---~~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L 224 (353)
..+.+|.+|+++. . ......++..+. ...+-.||.||........ -..+..+.++..
T Consensus 240 ~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lP 319 (405)
T 4b4t_J 240 HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP 319 (405)
T ss_dssp TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCC
T ss_pred hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCc
Confidence 4578999999974 0 011233433333 2234456667766554321 124678899999
Q ss_pred ChhHHHHHHHHhhhccCC-CCccHHHHHHHHHHHcCCCh
Q 045634 225 KYNKALELFCRKAFRETN-CSHDLLELSEEVVRHADGNP 262 (353)
Q Consensus 225 ~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~c~glP 262 (353)
+.++-.++|+.+.-+... ...++ ..+++.+.|.-
T Consensus 320 d~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 320 SVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 999888998876633221 12233 45666777653
No 67
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=35.85 E-value=2.2e+02 Score=24.79 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=57.5
Q ss_pred cCceeeEeccccchH-------------HHHHHHHhhcC----CCCCcEEEEEeCccccccc-c--CccceEEeCCCChh
Q 045634 168 LMKVLIVLDDVHDEF-------------TELKSLARRLQ----FSGRSRIIITSRDKGVLDK-C--GVNNMYEVKGLKYN 227 (353)
Q Consensus 168 ~kr~LlVLDdv~~~~-------------~~~~~l~~~~~----~~~gs~IivTTR~~~v~~~-~--~~~~~~~l~~L~~~ 227 (353)
.++.+|++|+++. . .....+...+. ...+..||.||........ + .....+.++..+.+
T Consensus 104 ~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 182 (322)
T 1xwi_A 104 NKPSIIFIDEIDS-LCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPH 182 (322)
T ss_dssp TSSEEEEEETTTG-GGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHH
T ss_pred cCCcEEEeecHHH-hccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHH
Confidence 4678999999985 2 11223332222 1234455556654432211 1 23457788989999
Q ss_pred HHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCC-hHHHHHHhhc
Q 045634 228 KALELFCRKAFRETNCSHDLLELSEEVVRHADGN-PLALEVLANN 271 (353)
Q Consensus 228 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~g~~ 271 (353)
+-.+++....-..... -.......+++.+.|. +-.|..+...
T Consensus 183 ~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 183 ARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp HHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 8889888776322211 1234567788888886 5456555443
No 68
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=33.19 E-value=2.6e+02 Score=24.76 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=57.8
Q ss_pred hcCceeeEeccccchHH-------------HHHHHHhhcC----CCCCcEEEEEeCcccccc-cc--CccceEEeCCCCh
Q 045634 167 QLMKVLIVLDDVHDEFT-------------ELKSLARRLQ----FSGRSRIIITSRDKGVLD-KC--GVNNMYEVKGLKY 226 (353)
Q Consensus 167 ~~kr~LlVLDdv~~~~~-------------~~~~l~~~~~----~~~gs~IivTTR~~~v~~-~~--~~~~~~~l~~L~~ 226 (353)
..+..+|+||+++. .. ....+...+. ...+..||.||....... .+ .....+.+...+.
T Consensus 141 ~~~~~vl~iDEid~-l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~ 219 (355)
T 2qp9_X 141 ENKPSIIFIDQVDA-LTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDL 219 (355)
T ss_dssp HTSSEEEEEECGGG-GTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCH
T ss_pred HcCCeEEEEechHh-hcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCH
Confidence 34678999999986 21 1233333322 233455665665443211 11 2345778899999
Q ss_pred hHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCC-ChHHHHHHhhc
Q 045634 227 NKALELFCRKAFRETNCSHDLLELSEEVVRHADG-NPLALEVLANN 271 (353)
Q Consensus 227 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~g~~ 271 (353)
++-.+++........... .......|++.+.| .|-.|..+...
T Consensus 220 ~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~l~~~ 263 (355)
T 2qp9_X 220 AARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAVVVKD 263 (355)
T ss_dssp HHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999887763322111 13456778888888 45455554433
No 69
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=33.13 E-value=85 Score=27.12 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=22.0
Q ss_pred CCcEEEEEeCccccccc-c----CccceEEeCCCChhHHHHHHHHhhh
Q 045634 196 GRSRIIITSRDKGVLDK-C----GVNNMYEVKGLKYNKALELFCRKAF 238 (353)
Q Consensus 196 ~gs~IivTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~ 238 (353)
.+..||.||........ + .....+.+ .+.++-.+++.....
T Consensus 154 ~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 154 ARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCTGIFR 199 (293)
T ss_dssp CCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCHHHHHHHHHHHHG
T ss_pred CCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCHHHHHHHHHHhcc
Confidence 34567888865543211 1 11233443 277787888876653
No 70
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=28.88 E-value=2.6e+02 Score=23.55 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=56.3
Q ss_pred hcCceeeEeccccchH-------------HHHHHHHhhc---C-C--CCCcEEEEEeCccccccc-c--CccceEEeCCC
Q 045634 167 QLMKVLIVLDDVHDEF-------------TELKSLARRL---Q-F--SGRSRIIITSRDKGVLDK-C--GVNNMYEVKGL 224 (353)
Q Consensus 167 ~~kr~LlVLDdv~~~~-------------~~~~~l~~~~---~-~--~~gs~IivTTR~~~v~~~-~--~~~~~~~l~~L 224 (353)
..++.+|+||+++. . .....+...+ + . +.+..||.||........ . .....+.++..
T Consensus 111 ~~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p 189 (297)
T 3b9p_A 111 HMQPSIIFIDEVDS-LLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLP 189 (297)
T ss_dssp HTCSEEEEEETGGG-TSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCC
T ss_pred HcCCcEEEeccHHH-hccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCc
Confidence 34567999999975 1 1112222222 2 1 234556667765432211 1 12356778888
Q ss_pred ChhHHHHHHHHhhhccCCCCccHHHHHHHHHHHcCCChH-HHHHHhhc
Q 045634 225 KYNKALELFCRKAFRETNCSHDLLELSEEVVRHADGNPL-ALEVLANN 271 (353)
Q Consensus 225 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~c~glPL-al~~~g~~ 271 (353)
+.++-..++...+-..... -..+....+++.+.|.+- ++..+...
T Consensus 190 ~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~l~~~ 235 (297)
T 3b9p_A 190 DEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTALAKD 235 (297)
T ss_dssp CHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 8888888887765332211 123456778888988875 66555443
No 71
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=28.20 E-value=1.2e+02 Score=19.37 Aligned_cols=50 Identities=8% Similarity=0.042 Sum_probs=38.8
Q ss_pred HHHHhhhhccCCCCCHHHHHHHHhcC-----chHHHHhhCCCcEeeCCeEEechh
Q 045634 300 KKTFLDIACFFTGEDIDFVRRIRDDP-----SSLDTFVDKSLITIFYNELQMHDL 349 (353)
Q Consensus 300 k~~fl~la~fp~~~~~~~l~~~w~~~-----~~l~~L~~~sLl~~~~~~~~mHdl 349 (353)
-.++..++.+++|.+...+.....-. ..++.|...+-+.....+|+|-+-
T Consensus 6 eaLLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKRsSRYrlkph 60 (68)
T 3i71_A 6 DELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSRYRLKPH 60 (68)
T ss_dssp HHHHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCEEEECC-
T ss_pred HHHHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhhccccccCcc
Confidence 35677888999999887766654332 899999999999998889987553
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=27.77 E-value=37 Score=34.66 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=16.2
Q ss_pred ceeeEeccccc-hHHHHHHHHhhcC
Q 045634 170 KVLIVLDDVHD-EFTELKSLARRLQ 193 (353)
Q Consensus 170 r~LlVLDdv~~-~~~~~~~l~~~~~ 193 (353)
.-+|+||+++. .....+.+...+.
T Consensus 661 ~~vl~lDEi~~l~~~~~~~Ll~~l~ 685 (854)
T 1qvr_A 661 YSVILFDEIEKAHPDVFNILLQILD 685 (854)
T ss_dssp SEEEEESSGGGSCHHHHHHHHHHHT
T ss_pred CeEEEEecccccCHHHHHHHHHHhc
Confidence 35899999986 3555566655554
No 73
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.60 E-value=1.8e+02 Score=26.85 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=44.6
Q ss_pred cCceeeEeccccch---------------HHHHHHHHhhcC---CCCCcEEEEEeCccccccc-c----CccceEEeCCC
Q 045634 168 LMKVLIVLDDVHDE---------------FTELKSLARRLQ---FSGRSRIIITSRDKGVLDK-C----GVNNMYEVKGL 224 (353)
Q Consensus 168 ~kr~LlVLDdv~~~---------------~~~~~~l~~~~~---~~~gs~IivTTR~~~v~~~-~----~~~~~~~l~~L 224 (353)
..+.++.+|+++.- ......++..+. ...|-.||.||........ + ..+..+++..+
T Consensus 264 ~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~l 343 (428)
T 4b4t_K 264 NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSL 343 (428)
T ss_dssp TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSS
T ss_pred cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCC
Confidence 35788889988630 112333443333 2334456667765554321 1 13446677655
Q ss_pred C-hhHHHHHHHHhhhccC-CCCccHHHHHHHHHHHcCCC
Q 045634 225 K-YNKALELFCRKAFRET-NCSHDLLELSEEVVRHADGN 261 (353)
Q Consensus 225 ~-~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~c~gl 261 (353)
+ .++-..+|..+.-+.. .+..++ ..+++.+.|.
T Consensus 344 Pd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 344 RDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp CCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 4 4444556665542222 112233 4556666665
No 74
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.18 E-value=3.1e+02 Score=25.36 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=50.3
Q ss_pred cCceeeEeccccch---------------HHHHHHHHhhcC-CC--CCcEEEEEeCccccccc-c----CccceEEeCCC
Q 045634 168 LMKVLIVLDDVHDE---------------FTELKSLARRLQ-FS--GRSRIIITSRDKGVLDK-C----GVNNMYEVKGL 224 (353)
Q Consensus 168 ~kr~LlVLDdv~~~---------------~~~~~~l~~~~~-~~--~gs~IivTTR~~~v~~~-~----~~~~~~~l~~L 224 (353)
..+.+|.+|+++.- ......++..+. .. .+-.||.||........ + ..+..++++..
T Consensus 273 ~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lP 352 (434)
T 4b4t_M 273 KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLP 352 (434)
T ss_dssp HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCC
T ss_pred cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCc
Confidence 35789999998730 011223444444 22 23355657766554322 1 24567889988
Q ss_pred ChhHHHHHHHHhhhccC-CCCccHHHHHHHHHHHcCCC
Q 045634 225 KYNKALELFCRKAFRET-NCSHDLLELSEEVVRHADGN 261 (353)
Q Consensus 225 ~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~c~gl 261 (353)
+.++-.++|+.+.-+.. ...-++ ..+++.+.|.
T Consensus 353 d~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 353 SEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp CHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred CHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 88888888876653322 112233 4566677664
No 75
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=26.97 E-value=54 Score=29.56 Aligned_cols=17 Identities=24% Similarity=0.149 Sum_probs=12.9
Q ss_pred CCcEEEeEEe---ecCCccc
Q 045634 101 NGKIVIPVFY---QVDPSDV 117 (353)
Q Consensus 101 ~~~~vipI~g---gVgkt~~ 117 (353)
.+.++|.|.+ |||||.+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~ 160 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTV 160 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHH
T ss_pred CCceEEEEECCCCCChHHHH
Confidence 4567888887 8999943
No 76
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=26.64 E-value=1e+02 Score=28.71 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=34.6
Q ss_pred hcCceeeEeccccchHHHHHHHHhhcCCCCCcEEEEEeCcccc------cccc-CccceEEeCCCChhHHHHHHHHhh
Q 045634 167 QLMKVLIVLDDVHDEFTELKSLARRLQFSGRSRIIITSRDKGV------LDKC-GVNNMYEVKGLKYNKALELFCRKA 237 (353)
Q Consensus 167 ~~kr~LlVLDdv~~~~~~~~~l~~~~~~~~gs~IivTTR~~~v------~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 237 (353)
..++.+|++| .. .+..+.+.+.+. ...-++|.+|..... ...+ .--..+.++.++.++..+++....
T Consensus 265 ~~~~~iLfiD--~~-~~a~~~L~~~L~-~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 265 QAGNIILFID--AA-IDASNILKPSLA-RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCCCCEEEEC--C---------CCCTT-SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCCeEEEEe--Cc-hhHHHHHHHhhc-CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 3467889999 23 333334444332 223455555544331 1111 011368999999999999998654
No 77
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=25.25 E-value=1.3e+02 Score=27.26 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=33.8
Q ss_pred ceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHH
Q 045634 15 KYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIA 66 (353)
Q Consensus 15 ~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~ 66 (353)
.+||+|---+++ ....+..|+..|+.+|+++-+|.. +.++...+..+
T Consensus 298 p~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~----~~~~~~k~~~A 344 (401)
T 1evl_A 298 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR----NEKIGFKIREH 344 (401)
T ss_dssp SSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECC----SSCHHHHHHHH
T ss_pred CeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHH
Confidence 478977654543 345888999999999999999872 34555556555
No 78
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=23.48 E-value=1.1e+02 Score=28.49 Aligned_cols=62 Identities=10% Similarity=0.077 Sum_probs=40.4
Q ss_pred CceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccC
Q 045634 14 SKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKD 80 (353)
Q Consensus 14 ~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 80 (353)
..+||+|-.-+++. ...+..++..|+++|+++-+|.. +.++...+..+-+.---.++++.++
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~----~~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE----KRQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS----CCCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC----CCCHHHHHHHHHHcCCCEEEEECch
Confidence 45799876655553 34788999999999999998863 3455555555543333345555544
No 79
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=23.24 E-value=2.2e+02 Score=22.21 Aligned_cols=68 Identities=10% Similarity=0.072 Sum_probs=43.8
Q ss_pred chHHHHHHHHHhCCcceeecccc-ccCCCCccHHHHHHhhhcCeEEeeecc--CcccchhhHhhhhhhhhc
Q 045634 30 GFTSHLAAALHRKQIQFFIDDEE-LEKGDEISPALFIAVETSDISVIILSK--DYASSKWCLNELVNILDC 97 (353)
Q Consensus 30 ~f~~~l~~~L~~~g~~~~~d~~~-~~~g~~~~~~i~~~i~~s~~~i~v~S~--~~~~s~~~~~El~~~~~~ 97 (353)
.+...+.+.|+..|+.++.-..+ ......|...-.++|++|.+.|++++| .-....-+..|+-.+...
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Al 97 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL 97 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHC
Confidence 58999999999999988763211 111122333446889999999999986 222233355666655543
No 80
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=22.94 E-value=1.6e+02 Score=27.06 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=36.1
Q ss_pred ceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHH-hhhcCeEEe
Q 045634 15 KYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIA-VETSDISVI 75 (353)
Q Consensus 15 ~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~-i~~s~~~i~ 75 (353)
.+||+|-.-+++. ...+..++..|..+|+++-+|.. +.++...+..+ ...+...|+
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~----~~~~~~~~~~a~~~g~~~~ii 388 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM----ERGLSAQLKYASAIGADFAVI 388 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS----CCCHHHHHHHHHHTTCSEEEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHCCCCEEEE
Confidence 4899865545443 34788999999999999998863 34554555544 334444333
No 81
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=22.93 E-value=4.7e+02 Score=24.42 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=55.5
Q ss_pred HhcCceeeEeccccc------------hHHHHHHHHhhcC---CCCCcEEEEEeCcccc-cccc----CccceEEeCCCC
Q 045634 166 LQLMKVLIVLDDVHD------------EFTELKSLARRLQ---FSGRSRIIITSRDKGV-LDKC----GVNNMYEVKGLK 225 (353)
Q Consensus 166 L~~kr~LlVLDdv~~------------~~~~~~~l~~~~~---~~~gs~IivTTR~~~v-~~~~----~~~~~~~l~~L~ 225 (353)
..+++.+|+||+++. .......+...+. ...+..||.||..... -..+ .....+.+...+
T Consensus 294 ~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~ 373 (489)
T 3hu3_A 294 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373 (489)
T ss_dssp HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCC
T ss_pred HhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCC
Confidence 345677999999952 0122333443333 2234455556654422 1111 234578899999
Q ss_pred hhHHHHHHHHhhhccCC-CCccHHHHHHHHHHHcCCC-hHHHHHHhh
Q 045634 226 YNKALELFCRKAFRETN-CSHDLLELSEEVVRHADGN-PLALEVLAN 270 (353)
Q Consensus 226 ~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~c~gl-PLal~~~g~ 270 (353)
.++-.++|..++-.... ....+ ..+++.+.|. +-.+..+..
T Consensus 374 ~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 374 ATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAALCS 416 (489)
T ss_dssp HHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHHHH
Confidence 99999999877632221 11122 4566666664 555655543
No 82
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=22.72 E-value=1e+02 Score=28.70 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=37.5
Q ss_pred ceeEEEeccc--cccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHH-hhhcCeEEeeecc
Q 045634 15 KYKVFLSFRG--EDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIA-VETSDISVIILSK 79 (353)
Q Consensus 15 ~~dvFiSy~~--~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~-i~~s~~~i~v~S~ 79 (353)
.++|+|---+ .+.....+..|+..|+.+|++|.+|+. +.++...+..+ .......| ++.+
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~----~~~~g~k~~~ad~~g~p~~i-ivG~ 427 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDT----DQRAGAKFATADLIGIPWQI-HVGP 427 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECS----SCCHHHHHHHHHHHTCSEEE-EECH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECC----CCCHHHHHHHHHhcCCCEEE-EECC
Confidence 4788665332 222345889999999999999999973 34555555554 33444443 4443
No 83
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=22.50 E-value=74 Score=25.73 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=33.4
Q ss_pred EEecccccc--ccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhh
Q 045634 19 FLSFRGEDT--RNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVE 68 (353)
Q Consensus 19 FiSy~~~D~--~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~ 68 (353)
||++-|-|. .-+-+..|.+.|+.+|+.+..-. .+.|..+...+.+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr--eP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR--EPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE--SSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE--CCCCCcHHHHHHHHhh
Confidence 899998885 35588999999999999886543 2334455555554443
No 84
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=22.23 E-value=1.9e+02 Score=24.23 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=36.0
Q ss_pred HHHHHHHhcCceeeEeccccc--hHHHHHHHHhhcC--CCCCcEEEEEeCccccccccCccceEEe
Q 045634 160 SRIKKRLQLMKVLIVLDDVHD--EFTELKSLARRLQ--FSGRSRIIITSRDKGVLDKCGVNNMYEV 221 (353)
Q Consensus 160 ~~l~~~L~~kr~LlVLDdv~~--~~~~~~~l~~~~~--~~~gs~IivTTR~~~v~~~~~~~~~~~l 221 (353)
-.|-..|-.++=+|+||..-. +....+.+...+. ...|..||++|.+...+..+..++++.+
T Consensus 152 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l 217 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVM 217 (250)
T ss_dssp HHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEE
Confidence 355566667788999998765 2333333333332 2347778888988766544322344433
No 85
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=21.37 E-value=1.7e+02 Score=23.57 Aligned_cols=41 Identities=7% Similarity=0.043 Sum_probs=32.6
Q ss_pred cCCCCCHHHHHHHHhcC-----chHHHHhhCCCcEeeCCeEEechh
Q 045634 309 FFTGEDIDFVRRIRDDP-----SSLDTFVDKSLITIFYNELQMHDL 349 (353)
Q Consensus 309 fp~~~~~~~l~~~w~~~-----~~l~~L~~~sLl~~~~~~~~mHdl 349 (353)
++-..+...+..+.... ..+..|.+.++|....+++.++|.
T Consensus 172 ~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~ 217 (231)
T 3e97_A 172 EVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPRSVTLLDL 217 (231)
T ss_dssp TEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEESCH
T ss_pred EecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEEEeCH
Confidence 33345677888877665 999999999999998888888874
No 86
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=20.99 E-value=1.3e+02 Score=23.61 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=30.3
Q ss_pred CCHHHHHHHHhcC-----chHHHHhhCCCcEeeCCeEEechh
Q 045634 313 EDIDFVRRIRDDP-----SSLDTFVDKSLITIFYNELQMHDL 349 (353)
Q Consensus 313 ~~~~~l~~~w~~~-----~~l~~L~~~sLl~~~~~~~~mHdl 349 (353)
.+...+..+.... ..+..|.+.++|....+++.++|.
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~ 206 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGT 206 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEEETC
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEEeC
Confidence 3567777777665 899999999999988888988874
No 87
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=20.30 E-value=1.8e+02 Score=27.12 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=40.0
Q ss_pred CceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccC
Q 045634 14 SKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKD 80 (353)
Q Consensus 14 ~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 80 (353)
...|||+..-+++.. .-+-.+...|+++|+++-++.. +.++...+..|-+.--..++++.++
T Consensus 360 ~~~~v~v~~~~~~~~-~~a~~la~~LR~~Gi~ve~~~~----~~slkkq~k~A~k~ga~~vviiGe~ 421 (456)
T 3lc0_A 360 HVVDDVVIPFDESMR-PHALAVLRRLRDAGRSADIILD----KKKVVQAFNYADRVGAVRAVLVAPE 421 (456)
T ss_dssp CCEEEEEEESSGGGH-HHHHHHHHHHHHTTCCEEECCS----CCCHHHHHHHHHHTTEEEEEEECHH
T ss_pred CCCcEEEEEcCHHHH-HHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHcCCCEEEEECCc
Confidence 357887765566543 3677899999999999988752 3445555555544433455555543
No 88
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=20.15 E-value=1.9e+02 Score=25.84 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=31.5
Q ss_pred HHHhcC-ceeeEeccccc--hHHHHHHHHhhcC-CCCCcEEEEEeCccccccccCccceEEe
Q 045634 164 KRLQLM-KVLIVLDDVHD--EFTELKSLARRLQ-FSGRSRIIITSRDKGVLDKCGVNNMYEV 221 (353)
Q Consensus 164 ~~L~~k-r~LlVLDdv~~--~~~~~~~l~~~~~-~~~gs~IivTTR~~~v~~~~~~~~~~~l 221 (353)
..+.+. .-+++||++.. +...-+.+...+. ...+..||+||.+..+... .+..+.+
T Consensus 299 ~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~--~d~~~~l 358 (371)
T 3auy_A 299 NALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDV--ADVIINV 358 (371)
T ss_dssp HHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGG--CSEEEEE
T ss_pred HHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhh--CCEEEEE
Confidence 344556 78999999986 2333333333333 2233458888887765433 2444444
No 89
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=20.09 E-value=4.7e+02 Score=26.20 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=60.5
Q ss_pred CceeEEEeccccccccchHHHHHHHHHhCCcceeeccccccCCCCccHHHHHHhhhcCeEEeeeccCcccchhhHhhhhh
Q 045634 14 SKYKVFLSFRGEDTRNGFTSHLAAALHRKQIQFFIDDEELEKGDEISPALFIAVETSDISVIILSKDYASSKWCLNELVN 93 (353)
Q Consensus 14 ~~~dvFiSy~~~D~~~~f~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~~~~s~~~~~El~~ 93 (353)
.+--||+.=-|.|..+.=...+...|+..|+.|. |- ..+.-.+++.++..+.+.-|+.+|--.....--+.++.+
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi-~l----G~~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~ 677 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVD-IG----PLFQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIK 677 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEE-EC----CTTCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEe-eC----CCCCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHH
Confidence 3445888877887654334445667888999984 32 222335788899999999999988765444333555665
Q ss_pred hhhccccCCcEEEeEEeecCCcc
Q 045634 94 ILDCKKMNGKIVIPVFYQVDPSD 116 (353)
Q Consensus 94 ~~~~~~~~~~~vipI~ggVgkt~ 116 (353)
.+...... .+.-++||+.|..
T Consensus 678 ~Lr~~G~~--dv~VivGG~~P~~ 698 (762)
T 2xij_A 678 ELNSLGRP--DILVMCGGVIPPQ 698 (762)
T ss_dssp HHHHTTCT--TSEEEEEESCCGG
T ss_pred HHHhcCCC--CCEEEEeCCCCcc
Confidence 55544221 2455666866663
No 90
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=20.05 E-value=2.1e+02 Score=22.85 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=33.1
Q ss_pred cCCCCCHHHHHHHHhcC-----chHHHHhhCCCcEeeCCeEEechh
Q 045634 309 FFTGEDIDFVRRIRDDP-----SSLDTFVDKSLITIFYNELQMHDL 349 (353)
Q Consensus 309 fp~~~~~~~l~~~w~~~-----~~l~~L~~~sLl~~~~~~~~mHdl 349 (353)
++...+...+..+.... ..+..|.+.++|....+++.++|.
T Consensus 174 i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~ 219 (227)
T 3d0s_A 174 VTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDS 219 (227)
T ss_dssp EECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCH
T ss_pred EcCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEEcCH
Confidence 34455777888877665 899999999999998889998874
Done!