BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045637
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 147 bits (371), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/124 (62%), Positives = 91/124 (73%), Gaps = 10/124 (8%)
Query: 158 VRRVPFFSQMDDQLPDALCERLVSSLSTLRA----------QMLFIISGRLESSTTNGGR 207
VRRVP F MD++L DA+CERL L T ++ +MLFII GRLES TT+GGR
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 208 TGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVAN 267
+GF+N L+ GDFCG+ELL WAL KS NLPSSTRTVKAL EVEAF L A++LKFVA+
Sbjct: 68 SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 268 QFRR 271
QFRR
Sbjct: 128 QFRR 131
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 16/130 (12%)
Query: 105 LLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFF 164
+ +R++P +LR + + Y++ + DE I + +R+D+ + C DLV VPFF
Sbjct: 21 MQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANYNCRDLVASVPFF 79
Query: 165 SQMDDQLPDALCERL----------VSSLSTLRAQMLFIISGRLESSTTNGGRTGFFNSI 214
D + L V T +M FI G ++ ++G +
Sbjct: 80 VGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDG-----VIAT 134
Query: 215 TLRPGDFCGE 224
+L G + GE
Sbjct: 135 SLSDGSYFGE 144
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 97 QYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLD 156
+Y+ + + ++P + R+ + + +++ + DE+SIL L LR +I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 157 LVRRVPFFSQMDDQLPDALCERL----------VSSLSTLRAQMLFIISGRLESSTTNGG 206
LV +P F+ D A+ +L + T+ +M FI G + S T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 131
Query: 207 RTGFFNSITLRPGDFCGE 224
+ + L G + GE
Sbjct: 132 K-----EMKLSDGSYFGE 144
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 97 QYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLD 156
+Y+ + + ++P + R+ + + +++ + DE+SIL L LR +I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 157 LVRRVPFFSQMDDQLPDALCERL----------VSSLSTLRAQMLFIISGRLESSTTNGG 206
LV +P F+ D A+ +L + T+ +M FI G + S T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 131
Query: 207 RTGFFNSITLRPGDFCGE 224
+ + L G + GE
Sbjct: 132 K-----EMKLSDGSYFGE 144
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 97 QYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLD 156
+Y+ + + ++P + R+ + + +++ + DE+SIL L LR +I C
Sbjct: 12 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRK 70
Query: 157 LVRRVPFFSQMDDQLPDALCERL----------VSSLSTLRAQMLFIISGRLESSTTNGG 206
LV +P F+ D A+ +L + T+ +M FI G + S T G
Sbjct: 71 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 129
Query: 207 RTGFFNSITLRPGDFCGE 224
+ + L G + GE
Sbjct: 130 K-----EMKLSDGSYFGE 142
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 97 QYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLD 156
+Y+ + + ++P + R+ + + +++ + DE+SIL L LR +I C
Sbjct: 17 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRK 75
Query: 157 LVRRVPFFSQMDDQLPDALCERL----------VSSLSTLRAQMLFIISGRLESSTTNGG 206
LV +P F+ D A+ +L + T+ +M FI G + S T G
Sbjct: 76 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 134
Query: 207 RTGFFNSITLRPGDFCGE 224
+ + L G + GE
Sbjct: 135 K-----EMKLSDGSYFGE 147
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 97 QYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLD 156
+Y+ + + ++P + R+ + + +++ + DE+SIL L LR I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRK 72
Query: 157 LVRRVPFFSQMDDQLPDALCERL----------VSSLSTLRAQMLFIISGRLESSTTNGG 206
LV +P F+ D A+ +L + T+ +M FI G + S T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 131
Query: 207 RTGFFNSITLRPGDFCGE 224
+ + L G + GE
Sbjct: 132 K-----EMKLSDGSYFGE 144
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 97 QYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLD 156
+Y+ + + ++P + R+ + + +++ + DEESIL L LR +I C
Sbjct: 11 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNCRK 69
Query: 157 LVRRVPFFSQMDDQLPDALCERL----------VSSLSTLRAQMLFIISGRLESSTTNGG 206
LV +P F+ D ++ +L + T+ +M FI G + S T G
Sbjct: 70 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 128
Query: 207 RTGFFNSITLRPGDFCGE 224
+ L G + GE
Sbjct: 129 K-----ETKLADGSYFGE 141
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 97 QYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLD 156
+Y+ + + ++P + R+ + + +++ + DEESIL L LR +I C
Sbjct: 11 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNCRK 69
Query: 157 LVRRVPFFSQMDDQLPDALCERL----------VSSLSTLRAQMLFIISGRLESSTTNGG 206
LV +P F+ D ++ +L + T+ +M FI G + S T G
Sbjct: 70 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 128
Query: 207 RTGFFNSITLRPGDFCGE 224
+ L G + GE
Sbjct: 129 K-----ETKLADGSYFGE 141
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 97 QYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLD 156
+Y+ + + ++P ++R+ + + +++ + DEE+IL L LR +I C
Sbjct: 17 KYKQVEQYMSFHKLPADMRQKIHDYYEHRYQG-KIFDEENILSELNDPLREEIVNFNCRK 75
Query: 157 LVRRVPFFSQMDDQLPDALCERL 179
LV +P F+ D A+ +L
Sbjct: 76 LVATMPLFANADPNFVTAMLSKL 98
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 17/138 (12%)
Query: 97 QYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLD 156
+Y+ + + ++P + R+ + + +++ + DE+SIL L LR +I
Sbjct: 16 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNNRK 74
Query: 157 LVRRVPFFSQMDDQLPDALCERL----------VSSLSTLRAQMLFIISGRLESSTTNGG 206
LV +P F+ D A+ +L + T+ +M FI G + S T G
Sbjct: 75 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 133
Query: 207 RTGFFNSITLRPGDFCGE 224
+ + L G + GE
Sbjct: 134 K-----EMKLSDGSYFGE 146
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 97 QYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLD 156
+Y+ + ++P + R+ + + +++ + DE+SIL L LR +I C
Sbjct: 14 KYKQVEQYXSFHKLPADFRQKIHDYYEHRYQG-KXFDEDSILGELNGPLREEIVNFNCRK 72
Query: 157 LVRRVPFFSQMDDQLPDALCERL 179
LV P F+ D A +L
Sbjct: 73 LVASXPLFANADPNFVTAXLTKL 95
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 20/149 (13%)
Query: 106 LHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFS 165
+HR +P+ L + + + W G+D +L P +LR DI HL +L+ ++P F
Sbjct: 27 VHR-LPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QLPLFE 84
Query: 166 QMDDQ--------LPDALC---ERLVSSLSTLRAQMLFIISGRLESSTTNGGRTGFFNSI 214
+ + C E L+ L+A + F+ SG +E N
Sbjct: 85 SASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQA-IYFVCSGSMEVLKDNTVLA------ 137
Query: 215 TLRPGDFCGEELLAWALLSKSTVNLPSST 243
L GD G + L + K+ N+ + T
Sbjct: 138 ILGKGDLIGSDSLTKEQVIKTNANVKALT 166
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 17/138 (12%)
Query: 97 QYRPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLD 156
+Y+ + + ++P + R+ + + +++ + DEESIL L LR +I
Sbjct: 17 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINFNXRK 75
Query: 157 LVRRVPFFSQMDDQLPDALCERL----------VSSLSTLRAQMLFIISGRLESSTTNGG 206
LV +P F+ D ++ +L + T+ +M FI G + S T G
Sbjct: 76 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 134
Query: 207 RTGFFNSITLRPGDFCGE 224
+ L G + GE
Sbjct: 135 K-----ETKLADGSYFGE 147
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 151 RHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLRAQMLFIISGRLESSTTNGG---R 207
R CLD++ + ++ LP E ++S + + A++ ++ +T + G R
Sbjct: 169 RANCLDILAEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLL------ATKDKGELLR 222
Query: 208 TGFFNSITLRPGDFCGEELLAWALLSKSTV-NLPSSTRTV 246
TG +I RP L AW+ ++ V +LP +TR V
Sbjct: 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDV 262
>pdb|3E61|A Chain A, Crystal Structure Of A Putative Transcriptional
Repressor Of Ribose Operon From Staphylococcus
Saprophyticus Subsp. Saprophyticus
pdb|3E61|B Chain B, Crystal Structure Of A Putative Transcriptional
Repressor Of Ribose Operon From Staphylococcus
Saprophyticus Subsp. Saprophyticus
Length = 277
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 2 DND----QGIWENSTLVFNNCNPESTTSFINGIFENTLTNNVVSSKFLEK 47
DND QG +T V +NC +T+F I ENTLT++ + F+++
Sbjct: 47 DNDIKKAQGYL--ATFVSHNCTGMISTAFNENIIENTLTDHHIPFVFIDR 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,343,035
Number of Sequences: 62578
Number of extensions: 367491
Number of successful extensions: 931
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 917
Number of HSP's gapped (non-prelim): 18
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)