Query 045637
Match_columns 392
No_of_seqs 349 out of 2045
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:57:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 7.4E-79 1.6E-83 642.8 22.5 329 24-389 282-641 (727)
2 PLN03192 Voltage-dependent pot 100.0 5E-40 1.1E-44 360.8 25.5 234 37-282 240-499 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 2E-39 4.3E-44 323.4 19.9 229 42-278 178-432 (536)
4 KOG0499 Cyclic nucleotide-gate 100.0 7.6E-35 1.7E-39 294.5 10.2 222 42-273 398-645 (815)
5 KOG0501 K+-channel KCNQ [Inorg 100.0 1.1E-28 2.5E-33 249.3 10.0 226 41-279 417-668 (971)
6 PRK09392 ftrB transcriptional 99.3 2.3E-11 5.1E-16 114.5 14.6 117 155-282 6-132 (236)
7 cd00038 CAP_ED effector domain 99.2 4.6E-10 9.9E-15 91.1 11.5 102 163-275 1-113 (115)
8 smart00100 cNMP Cyclic nucleot 99.1 2.2E-09 4.8E-14 87.3 13.3 108 163-278 1-118 (120)
9 PRK11753 DNA-binding transcrip 99.1 2.9E-09 6.2E-14 98.1 14.4 106 165-280 6-122 (211)
10 KOG0614 cGMP-dependent protein 99.1 1.3E-10 2.8E-15 118.4 5.3 123 151-282 267-400 (732)
11 PF00027 cNMP_binding: Cyclic 99.0 2.7E-09 5.8E-14 84.1 10.7 80 182-271 9-91 (91)
12 COG0664 Crp cAMP-binding prote 99.0 1.2E-08 2.6E-13 92.7 14.2 114 158-282 2-126 (214)
13 PRK10402 DNA-binding transcrip 98.9 1.9E-08 4.2E-13 94.4 11.7 99 172-281 24-133 (226)
14 PRK11161 fumarate/nitrate redu 98.9 3.8E-08 8.3E-13 92.4 13.2 112 158-281 15-138 (235)
15 COG2905 Predicted signal-trans 98.8 2.6E-08 5.7E-13 102.8 12.7 106 155-274 6-121 (610)
16 PF07885 Ion_trans_2: Ion chan 98.8 6.2E-09 1.3E-13 82.0 6.4 54 45-98 22-75 (79)
17 PLN02868 acyl-CoA thioesterase 98.8 2.8E-08 6.1E-13 101.8 11.6 103 155-270 7-119 (413)
18 KOG1113 cAMP-dependent protein 98.7 4.3E-08 9.3E-13 96.2 7.8 108 155-277 121-238 (368)
19 TIGR03697 NtcA_cyano global ni 98.7 1.8E-07 3.9E-12 84.8 11.3 92 182-282 3-98 (193)
20 PRK09391 fixK transcriptional 98.6 5.2E-07 1.1E-11 85.0 12.2 96 173-282 32-138 (230)
21 KOG1113 cAMP-dependent protein 98.5 2.1E-07 4.6E-12 91.3 7.2 112 149-274 233-354 (368)
22 KOG0614 cGMP-dependent protein 98.5 1.3E-07 2.8E-12 96.9 5.4 109 150-273 148-266 (732)
23 KOG1419 Voltage-gated K+ chann 98.3 5.3E-07 1.2E-11 92.8 4.6 83 41-123 263-354 (654)
24 PRK13918 CRP/FNR family transc 98.3 1E-05 2.3E-10 73.9 11.5 77 188-282 27-104 (202)
25 KOG3713 Voltage-gated K+ chann 98.1 9.7E-07 2.1E-11 90.2 1.2 54 45-98 375-428 (477)
26 PRK10537 voltage-gated potassi 98.1 4.9E-06 1.1E-10 84.9 5.4 54 45-98 166-219 (393)
27 KOG1418 Tandem pore domain K+ 97.5 9.1E-05 2E-09 74.5 3.7 52 47-98 115-166 (433)
28 KOG1420 Ca2+-activated K+ chan 97.4 2E-05 4.4E-10 81.6 -1.2 126 46-174 287-428 (1103)
29 KOG2968 Predicted esterase of 97.3 0.0006 1.3E-08 74.2 7.6 103 171-284 500-613 (1158)
30 KOG3684 Ca2+-activated K+ chan 97.3 0.00024 5.2E-09 72.3 4.0 85 43-127 283-375 (489)
31 KOG1545 Voltage-gated shaker-l 97.2 1.5E-05 3.4E-10 78.6 -4.9 56 43-98 389-444 (507)
32 PF00520 Ion_trans: Ion transp 97.2 0.00049 1.1E-08 61.3 5.0 58 39-96 137-200 (200)
33 PF01007 IRK: Inward rectifier 96.6 0.0042 9E-08 62.2 6.3 54 45-98 82-137 (336)
34 KOG4390 Voltage-gated A-type K 95.5 0.001 2.2E-08 66.5 -3.7 58 41-98 350-407 (632)
35 KOG4404 Tandem pore domain K+ 95.3 0.0051 1.1E-07 60.4 0.3 59 47-105 186-254 (350)
36 KOG3542 cAMP-regulated guanine 95.1 0.041 8.9E-07 58.7 6.1 103 153-270 278-392 (1283)
37 PRK11832 putative DNA-binding 95.0 0.22 4.7E-06 46.6 10.0 69 188-270 42-110 (207)
38 KOG4404 Tandem pore domain K+ 95.0 0.0024 5.2E-08 62.6 -3.0 51 47-97 80-130 (350)
39 KOG2968 Predicted esterase of 94.6 0.33 7.3E-06 53.7 11.4 96 183-281 126-224 (1158)
40 KOG1418 Tandem pore domain K+ 92.9 0.013 2.8E-07 58.9 -2.6 47 47-93 242-296 (433)
41 PF04831 Popeye: Popeye protei 92.7 1.2 2.6E-05 39.5 9.8 98 166-273 14-123 (153)
42 PF00612 IQ: IQ calmodulin-bin 88.5 0.49 1.1E-05 27.6 2.4 17 292-308 3-19 (21)
43 smart00015 IQ Short calmodulin 82.6 1.3 2.8E-05 27.1 2.3 19 290-308 3-21 (26)
44 PF05899 Cupin_3: Protein of u 80.2 2 4.3E-05 33.2 3.2 30 188-223 26-55 (74)
45 PF07883 Cupin_2: Cupin domain 79.2 3.5 7.7E-05 30.5 4.3 29 188-223 20-48 (71)
46 KOG3193 K+ channel subunit [In 78.8 0.31 6.8E-06 51.1 -2.2 33 49-81 219-251 (1087)
47 PF14377 DUF4414: Domain of un 75.9 5.3 0.00011 33.3 4.8 44 109-152 52-105 (108)
48 PF08763 Ca_chan_IQ: Voltage g 69.1 5.6 0.00012 26.5 2.6 21 291-311 10-30 (35)
49 KOG3827 Inward rectifier K+ ch 68.0 4 8.7E-05 41.4 2.6 54 45-98 110-165 (400)
50 PF08006 DUF1700: Protein of u 67.1 6.3 0.00014 35.7 3.6 53 99-153 8-64 (181)
51 COG4709 Predicted membrane pro 62.7 15 0.00031 33.9 4.9 69 99-169 8-80 (195)
52 PRK13290 ectC L-ectoine syntha 60.5 51 0.0011 28.2 7.7 33 188-225 56-88 (125)
53 COG3837 Uncharacterized conser 55.8 21 0.00046 31.9 4.6 31 188-225 65-95 (161)
54 TIGR03037 anthran_nbaC 3-hydro 54.7 25 0.00055 31.5 5.0 33 188-223 49-81 (159)
55 COG3450 Predicted enzyme of th 54.6 23 0.00051 30.1 4.6 29 188-222 64-92 (116)
56 PF14377 DUF4414: Domain of un 53.1 32 0.00069 28.6 5.2 48 109-156 8-68 (108)
57 KOG3542 cAMP-regulated guanine 51.2 20 0.00043 39.2 4.4 94 142-258 23-126 (1283)
58 CHL00038 psbL photosystem II p 47.3 27 0.00058 23.5 3.0 10 49-58 15-24 (38)
59 COG0662 {ManC} Mannose-6-phosp 46.9 52 0.0011 27.9 5.7 39 177-222 36-85 (127)
60 PF00060 Lig_chan: Ligand-gate 45.2 15 0.00032 31.2 2.0 55 43-98 40-94 (148)
61 PF15157 IQ-like: IQ-like 43.1 17 0.00038 29.2 1.9 16 292-307 49-64 (97)
62 PRK13264 3-hydroxyanthranilate 42.1 48 0.001 30.3 4.8 58 186-260 53-110 (177)
63 PF02419 PsbL: PsbL protein; 39.7 57 0.0012 21.9 3.6 14 80-93 23-36 (37)
64 COG5559 Uncharacterized conser 39.7 28 0.00061 26.0 2.4 19 135-153 5-23 (65)
65 KOG2568 Predicted membrane pro 38.8 1.2E+02 0.0026 32.4 7.8 92 52-158 283-385 (518)
66 KOG0498 K+-channel ERG and rel 38.5 47 0.001 36.9 5.0 42 138-179 370-416 (727)
67 COG1917 Uncharacterized conser 35.8 93 0.002 26.1 5.5 40 179-225 45-95 (131)
68 KOG1419 Voltage-gated K+ chann 35.7 31 0.00067 36.9 2.9 17 288-304 338-354 (654)
69 PRK00753 psbL photosystem II r 34.8 46 0.001 22.5 2.6 10 50-59 17-26 (39)
70 PF02060 ISK_Channel: Slow vol 34.0 52 0.0011 28.4 3.5 36 72-107 41-84 (129)
71 COG3109 ProQ Activator of osmo 33.7 25 0.00054 32.0 1.6 34 261-294 41-74 (208)
72 KOG0162 Myosin class I heavy c 33.3 30 0.00066 38.2 2.4 27 287-314 694-720 (1106)
73 PF11699 CENP-C_C: Mif2/CENP-C 30.8 92 0.002 24.9 4.3 29 188-223 34-62 (85)
74 PF06249 EutQ: Ethanolamine ut 30.6 1.9E+02 0.004 25.9 6.6 49 188-257 96-144 (152)
75 PRK13726 conjugal transfer pil 30.4 4.3E+02 0.0094 24.3 11.2 115 74-202 10-152 (188)
76 PRK09943 DNA-binding transcrip 29.8 1.3E+02 0.0028 27.0 5.8 29 188-223 129-157 (185)
77 PRK13481 glycosyltransferase; 28.3 1.1E+02 0.0024 29.2 5.1 67 75-141 11-84 (232)
78 TIGR03404 bicupin_oxalic bicup 27.8 1.4E+02 0.0031 30.3 6.2 33 188-222 267-299 (367)
79 smart00835 Cupin_1 Cupin. This 27.6 2E+02 0.0044 24.6 6.4 35 188-224 52-87 (146)
80 PF00190 Cupin_1: Cupin; Inte 26.8 1.5E+02 0.0032 25.5 5.3 37 188-225 55-97 (144)
81 PF10011 DUF2254: Predicted me 26.5 1.4E+02 0.0031 30.3 5.9 54 43-98 96-151 (371)
82 PF12973 Cupin_7: ChrR Cupin-l 26.0 2E+02 0.0043 22.6 5.6 44 188-256 45-88 (91)
83 TIGR03214 ura-cupin putative a 25.8 1E+02 0.0022 29.7 4.5 29 188-223 81-109 (260)
84 COG3435 Gentisate 1,2-dioxygen 25.7 78 0.0017 31.5 3.6 32 188-225 113-144 (351)
85 PF02532 PsbI: Photosystem II 25.2 1.1E+02 0.0024 20.5 3.1 21 75-95 7-27 (36)
86 PRK11171 hypothetical protein; 24.9 1.7E+02 0.0037 28.2 5.9 29 188-223 84-112 (266)
87 PRK15457 ethanolamine utilizat 23.7 1.2E+02 0.0027 28.9 4.5 28 188-222 176-203 (233)
88 KOG3300 NADH:ubiquinone oxidor 22.9 80 0.0017 27.5 2.7 66 77-143 36-106 (146)
89 TIGR03404 bicupin_oxalic bicup 22.6 2.1E+02 0.0046 29.1 6.3 33 188-223 88-121 (367)
90 PF02311 AraC_binding: AraC-li 22.4 1.1E+02 0.0024 24.6 3.6 28 188-222 24-51 (136)
91 smart00751 BSD domain in trans 22.2 55 0.0012 23.3 1.4 25 29-53 24-48 (51)
92 PRK11171 hypothetical protein; 21.8 2E+02 0.0044 27.7 5.8 39 178-223 185-234 (266)
93 PF14841 FliG_M: FliG middle d 21.6 1E+02 0.0023 23.9 3.0 39 135-181 30-68 (79)
94 COG2140 Thermophilic glucose-6 20.2 2E+02 0.0043 27.1 5.0 40 181-222 94-136 (209)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-79 Score=642.80 Aligned_cols=329 Identities=52% Similarity=0.834 Sum_probs=304.0
Q ss_pred CCccccchhhhhhcCccCcchHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc-----
Q 045637 24 TSFINGIFENTLTNNVVSSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY----- 98 (392)
Q Consensus 24 ~~f~~gi~~~a~~~~i~~~s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~----- 98 (392)
..|+||+|+|++ ||++|||||++||||+|||+++|+|..|++|+|++|++|+++||++||||++
T Consensus 282 ~~~~fg~~s~~~-----------kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ 350 (727)
T KOG0498|consen 282 LSFTFGIYSLAL-----------KYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL 350 (727)
T ss_pred ccccccchhHHH-----------HHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence 348999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred -----------ccccCccccCCCChhHHHHHHhHhHhHhhccCCCCHHHHHHhCChhhHHHHHHHHHHHHhcccccCCCC
Q 045637 99 -----------RPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQM 167 (392)
Q Consensus 99 -----------~~i~~~M~~r~lp~~Lr~RVr~y~~y~w~~~~g~dee~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l 167 (392)
+++++||++|+||++||+||++|++|+|..++|+||+++|++||++||+||++|+|+++|++||+|++|
T Consensus 351 tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~m 430 (727)
T KOG0498|consen 351 TSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGM 430 (727)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCC
Q 045637 168 DDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTV 237 (392)
Q Consensus 168 ~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~ 237 (392)
|+++|++||.++|+.+|+|| ++||||++|.|++.+++|| +++++..|++||+|||+.++||++
T Consensus 431 d~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g--~~~~~~~L~~Gd~~GeEl~~~~~~----- 503 (727)
T KOG0498|consen 431 DDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGG--GFFVVAILGPGDFFGEELLTWCLD----- 503 (727)
T ss_pred CHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCC--ceEEEEEecCCCccchHHHHHHhc-----
Confidence 99999999999999999999 9999999999999999887 678899999999999999999985
Q ss_pred CCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHhHHhhccccc
Q 045637 238 NLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFCFYSHHWRTWPACFIQAAWRHCKKRKMAKNLGMMES 317 (392)
Q Consensus 238 ~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r~~s~~~r~~~~~~iq~~w~~~~~r~~~~~~~~~~~ 317 (392)
+ |+++||+|+|.|+++.|+++||++|+++||++++++++|++||||++||+|+||+||++||||++||..+.+..+|.
T Consensus 504 -~-p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~~~~ 581 (727)
T KOG0498|consen 504 -L-PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELALEEE 581 (727)
T ss_pred -C-CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhhhhcc
Confidence 1 34999999999999999999999999999999999999999999999999999999999999999999998887764
Q ss_pred CCCCCchhhhhhhhhHHhhhhcccccccccchhHHHHHHHHHHHHhhhhhhcc-----CCCCCCCCCCCCCCCCCCC
Q 045637 318 FSYVPDEQVACETEQEEEEHRTSTSSQAKQNLNVTILASRFAANTRRVGQKIK-----GVEMPRLQRPDEPDFSAGA 389 (392)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 389 (392)
... ... .+.+...+++++++|++||+|+++.++... ...++.++||.||||+.++
T Consensus 582 ~~~--------------~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~ 641 (727)
T KOG0498|consen 582 ESA--------------IRG---DDRGSKSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPADPDFSDAE 641 (727)
T ss_pred hhh--------------hcc---ccccchhhhhcccccccccccCCCccccccccCccccccccCCCCCCCCccccc
Confidence 321 111 113556889999999999999999887632 3457789999999998643
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=5e-40 Score=360.77 Aligned_cols=234 Identities=18% Similarity=0.292 Sum_probs=215.0
Q ss_pred cCccCcchHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc----------------cc
Q 045637 37 NNVVSSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY----------------RP 100 (392)
Q Consensus 37 ~~i~~~s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~----------------~~ 100 (392)
.++.+.+++.+|++|+||+++|||||||||++|.|..|++|+|++|++|+++|||+||+|.+ +.
T Consensus 240 ~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~ 319 (823)
T PLN03192 240 PNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEA 319 (823)
T ss_pred hccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999998 57
Q ss_pred ccCccccCCCChhHHHHHHhHhHhHhhccCCCCHHHHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcE
Q 045637 101 ICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLV 180 (392)
Q Consensus 101 i~~~M~~r~lp~~Lr~RVr~y~~y~w~~~~g~dee~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk 180 (392)
+++||++++||++||+||++|++|+|. ..+.+++++++.||++||.+|..+++.++++++|+|++++++++..|+..++
T Consensus 320 ~~~ym~~~~lp~~lq~ri~~y~~~~~~-~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~ 398 (823)
T PLN03192 320 ASNFVGRNRLPPRLKDQILAYMCLRFK-AESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMK 398 (823)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHh-hccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhh
Confidence 899999999999999999999999996 4568899999999999999999999999999999999999999999999999
Q ss_pred EEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEee
Q 045637 181 SSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALI 250 (392)
Q Consensus 181 ~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t 250 (392)
+..|.|| ++||||++|+|++...+++.+. .+..+++|++|||..++ ... +++.|++|.+
T Consensus 399 ~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~--~l~~l~~Gd~FGE~~~l----~~~-----p~~~t~ra~~ 467 (823)
T PLN03192 399 AEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKER--VVGTLGCGDIFGEVGAL----CCR-----PQSFTFRTKT 467 (823)
T ss_pred eeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcce--eeEEccCCCEecchHHh----cCC-----CCCCeEEEcc
Confidence 9999999 8899999999999876655543 35789999999999553 332 7899999999
Q ss_pred eEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 251 EVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 251 ~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
.|+++.|++++|.++++++|+.....++...+
T Consensus 468 ~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~ 499 (823)
T PLN03192 468 LSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQ 499 (823)
T ss_pred cEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999988777766655
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2e-39 Score=323.36 Aligned_cols=229 Identities=22% Similarity=0.381 Sum_probs=210.4
Q ss_pred cchHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc----------------ccccCcc
Q 045637 42 SKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY----------------RPICNPL 105 (392)
Q Consensus 42 ~s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~----------------~~i~~~M 105 (392)
.++..+|++|+||+..||||+|.-. +|.+..|.+|.|+-.++|+++||.++|+|++ +.+++||
T Consensus 178 ~n~~ReY~~S~YWStLTlTTiGe~P-~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM 256 (536)
T KOG0500|consen 178 GNLTREYLYSLYWSTLTLTTIGEQP-PPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYM 256 (536)
T ss_pred hHHHHHHHHHHHHHhhhhhhccCCC-CCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999644 4556999999999999999999999999998 7899999
Q ss_pred ccCCCChhHHHHHHhHhHhHhhccCCCCHHHHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEec
Q 045637 106 LHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLST 185 (392)
Q Consensus 106 ~~r~lp~~Lr~RVr~y~~y~w~~~~g~dee~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~ 185 (392)
+.|++|..|+.||.+||.|.|.+.+-.||+++++.||+.|+.+|+.+++.+.|++|++|+++.+.+|..|+..+++++|.
T Consensus 257 ~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfS 336 (536)
T KOG0500|consen 257 RYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFS 336 (536)
T ss_pred HHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEE
Q 045637 186 LR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAF 255 (392)
Q Consensus 186 ~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~ 255 (392)
|| .+||+|.+|+++++..||+. ....+++|++|||..+++ -++..+..+|+++|+++..+++|
T Consensus 337 PgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t----~~~~L~~G~~FGEisIln---i~g~~~gNRRtanvrSvGYSDlf 409 (536)
T KOG0500|consen 337 PGDYICRKGDVGKEMYIVKEGKLAVVADDGVT----VFVTLKAGSVFGEISILN---IKGNKNGNRRTANVRSVGYSDLF 409 (536)
T ss_pred CCCeEEecCcccceEEEEEccEEEEEecCCcE----EEEEecCCceeeeeEEEE---EcCcccCCcceeeeeeeccceee
Confidence 99 89999999999999977764 247899999999997753 22334456899999999999999
Q ss_pred EEcHHHHHHHHHHhHHHHHHHHH
Q 045637 256 VLRAEDLKFVANQFRRLHSKKLQ 278 (392)
Q Consensus 256 ~L~~edf~~ll~~fP~l~~~~lq 278 (392)
+|+++|+.+++++||+....+++
T Consensus 410 vLskdDl~~aL~eYP~a~~~L~~ 432 (536)
T KOG0500|consen 410 VLSKDDLWEALSEYPDARKRLEE 432 (536)
T ss_pred EeeHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999998877664
No 4
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-35 Score=294.50 Aligned_cols=222 Identities=23% Similarity=0.349 Sum_probs=204.2
Q ss_pred cchHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc----------------ccccCcc
Q 045637 42 SKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY----------------RPICNPL 105 (392)
Q Consensus 42 ~s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~----------------~~i~~~M 105 (392)
+..+..|++|+|||+.|++|+| |.-.|++.+|++|..+.-++|+++||.+||.|.. ++.-.||
T Consensus 398 dg~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym 476 (815)
T KOG0499|consen 398 DGEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYM 476 (815)
T ss_pred cCCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Confidence 4457899999999999999999 5556677999999999999999999999999987 6888999
Q ss_pred ccCCCChhHHHHHHhHhHhHhhccCCCCHHHHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEec
Q 045637 106 LHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLST 185 (392)
Q Consensus 106 ~~r~lp~~Lr~RVr~y~~y~w~~~~g~dee~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~ 185 (392)
+.-+||.+.|.|||.+|+|.|..++..||.+||+.||..||.|++..++..+|.+|.+|++++.+++..++.+|++++|.
T Consensus 477 ~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yL 556 (815)
T KOG0499|consen 477 NNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYL 556 (815)
T ss_pred HhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEE
Q 045637 186 LR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAF 255 (392)
Q Consensus 186 ~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~ 255 (392)
|| .+||+|..|+|+|....++.. ++.+|+.|++|||++|+ |. +. ..+||++|+|.+.|.+|
T Consensus 557 PgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~---Vl~tL~~GsVFGEISLL-ai---gG--~nRRTAnV~a~Gf~nLf 627 (815)
T KOG0499|consen 557 PGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTK---VLVTLKAGSVFGEISLL-AI---GG--GNRRTANVVAHGFANLF 627 (815)
T ss_pred CCceeeecccccceeEEeecceEEEecCCCCCE---EEEEecccceeeeeeee-ee---cC--CCccchhhhhcccceee
Confidence 99 899999999999997665554 55899999999999775 33 22 23899999999999999
Q ss_pred EEcHHHHHHHHHHhHHHH
Q 045637 256 VLRAEDLKFVANQFRRLH 273 (392)
Q Consensus 256 ~L~~edf~~ll~~fP~l~ 273 (392)
+|+++|+.+|+.+||+-.
T Consensus 628 vL~KkdLneil~~YP~sq 645 (815)
T KOG0499|consen 628 VLDKKDLNEILVHYPDSQ 645 (815)
T ss_pred EecHhHHHHHHHhCccHH
Confidence 999999999999999754
No 5
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.1e-28 Score=249.29 Aligned_cols=226 Identities=22% Similarity=0.354 Sum_probs=207.1
Q ss_pred CcchHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc----------------ccccCc
Q 045637 41 SSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY----------------RPICNP 104 (392)
Q Consensus 41 ~~s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~----------------~~i~~~ 104 (392)
.+|--..|+.|+||.++.|||||+|.+.|.+..|.+|++.+|++|.++||.++|+|.+ +.+.+|
T Consensus 417 GPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReF 496 (971)
T KOG0501|consen 417 GPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREF 496 (971)
T ss_pred CCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3456678999999999999999999999999999999999999999999999999998 688999
Q ss_pred cccCCCChhHHHHHHhHhHhHhhccCCCCHHHHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEe
Q 045637 105 LLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLS 184 (392)
Q Consensus 105 M~~r~lp~~Lr~RVr~y~~y~w~~~~g~dee~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y 184 (392)
|+-.++|+.|.+||..|.--.|..++|.|.+++|.-.|+++|.||..|+.++.+...|.|+-.++..|.+|+..++...+
T Consensus 497 lKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~ 576 (971)
T KOG0501|consen 497 LKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHC 576 (971)
T ss_pred HHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEE
Q 045637 185 TLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEA 254 (392)
Q Consensus 185 ~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el 254 (392)
.|| +.+.||++|.++|...+. +++.|++||+||++ +|-- . .+..+.+.|+|+|.|++
T Consensus 577 APGDLlYHtGESvDaLcFvVsGSLEVIQDDE------VVAILGKGDVFGD~--FWK~---~--t~~qs~ANVRALTYcDL 643 (971)
T KOG0501|consen 577 APGDLLYHTGESVDALCFVVSGSLEVIQDDE------VVAILGKGDVFGDE--FWKE---N--TLGQSAANVRALTYCDL 643 (971)
T ss_pred CCcceeeecCCccceEEEEEecceEEeecCc------EEEEeecCccchhH--Hhhh---h--hhhhhhhhhhhhhhhhh
Confidence 888 999999999999998653 35889999999998 3321 1 23367899999999999
Q ss_pred EEEcHHHHHHHHHHhHHHHHHHHHH
Q 045637 255 FVLRAEDLKFVANQFRRLHSKKLQH 279 (392)
Q Consensus 255 ~~L~~edf~~ll~~fP~l~~~~lq~ 279 (392)
..|.++.+..+++-|..+++...+.
T Consensus 644 H~IKrd~Ll~VLdFYtAFanSFaRN 668 (971)
T KOG0501|consen 644 HMIKRDKLLKVLDFYTAFANSFARN 668 (971)
T ss_pred hHHhHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999988665443
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.33 E-value=2.3e-11 Score=114.45 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=100.4
Q ss_pred HHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeec
Q 045637 155 LDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGE 224 (392)
Q Consensus 155 ~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE 224 (392)
.+.++.+|+|+.++++.++.|+...+.+.|.+| +.+|||++|.|+++...+++. ..+..+.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~--~~i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRE--TTLAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCce--EEEEEeCCCchhhh
Confidence 457899999999999999999999999999999 899999999999987655544 34688999999999
Q ss_pred hhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 225 ELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 225 ~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
..+ +... ++..+++|.++|+++.|++++|..++.++|.+....++...+
T Consensus 84 ~~~----~~~~-----~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~ 132 (236)
T PRK09392 84 AAV----VLDA-----PYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAG 132 (236)
T ss_pred HHH----hCCC-----CCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 843 3333 688999999999999999999999999999998766654443
No 7
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.15 E-value=4.6e-10 Score=91.09 Aligned_cols=102 Identities=27% Similarity=0.417 Sum_probs=86.6
Q ss_pred cCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechhhHHHh
Q 045637 163 FFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAWAL 231 (392)
Q Consensus 163 lF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~aL 231 (392)
+|..++++.+..|+..++...|.+| +.+|||.+|.|++...+ +|+. ..+..+.+|++||+..+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~--~~~~~~~~g~~~g~~~~---- 74 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGRE--QIVGFLGPGDLFGELAL---- 74 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcE--EEEEecCCccCcChHHH----
Confidence 5789999999999999999999998 89999999999998654 3333 24578999999999844
Q ss_pred hhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHH
Q 045637 232 LSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSK 275 (392)
Q Consensus 232 ~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~ 275 (392)
+.. .++..+++|.++|+++.|+.++|..++.++|.+..+
T Consensus 75 ~~~-----~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (115)
T cd00038 75 LGN-----GPRSATVRALTDSELLVLPRSDFRRLLQEYPELARR 113 (115)
T ss_pred hcC-----CCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence 222 267899999999999999999999999999988754
No 8
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.10 E-value=2.2e-09 Score=87.34 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=88.4
Q ss_pred cCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhh
Q 045637 163 FFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALL 232 (392)
Q Consensus 163 lF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~ 232 (392)
+|.++++..++.++..++...|.+| +.+|||.+|.+++...+.+... ..+..+.+|++||+..++ .
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~-~~~~~~~~g~~~g~~~~~---~ 76 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGRE-QILGILGPGDFFGELALL---T 76 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCce-EEEEeecCCceechhhhc---c
Confidence 5889999999999999999999999 8999999999999976422222 345889999999999542 0
Q ss_pred hcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHH
Q 045637 233 SKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQ 278 (392)
Q Consensus 233 ~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq 278 (392)
. ...++..++.|.++|++..++.++|......+|.+..+.+.
T Consensus 77 ~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 118 (120)
T smart00100 77 N----SRRAASATAVALELATLLRIDFRDFLQLLQENPQLLLELLL 118 (120)
T ss_pred C----CCcccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHHh
Confidence 1 11267899999999999999999999999999988766553
No 9
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.07 E-value=2.9e-09 Score=98.11 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=87.5
Q ss_pred CCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechhhHHHhhh
Q 045637 165 SQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAWALLS 233 (392)
Q Consensus 165 ~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~ 233 (392)
+-++++.++.++..++.+.|.+| +.+|||++|.|+++..+ +|++ ..+..+++|++||+..+ +.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~--~~~~~~~~g~~~g~~~~----~~ 79 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKE--MILSYLNQGDFIGELGL----FE 79 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCE--EEEEEcCCCCEEeehhh----cc
Confidence 45789999999999999999999 89999999999998654 3443 34578999999999844 22
Q ss_pred cCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHH
Q 045637 234 KSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHT 280 (392)
Q Consensus 234 ~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~ 280 (392)
. .++++.+++|.++|+++.|++++|..++.++|++....++..
T Consensus 80 ~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~ 122 (211)
T PRK11753 80 E----GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQM 122 (211)
T ss_pred C----CCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 1 135788999999999999999999999999999986555443
No 10
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.06 E-value=1.3e-10 Score=118.39 Aligned_cols=123 Identities=22% Similarity=0.336 Sum_probs=106.4
Q ss_pred HHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCC
Q 045637 151 RHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGD 220 (392)
Q Consensus 151 ~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd 220 (392)
..-+..+|+++|+|.++|++.|..|++.++...|..| +.+|+|.+|.|.+...+.+......+..++.||
T Consensus 267 ~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd 346 (732)
T KOG0614|consen 267 HEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGD 346 (732)
T ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccc
Confidence 3456789999999999999999999999999999988 899999999999998765544445678999999
Q ss_pred eeechhhHHHhhhcCCCCCCCcceEEEEeee-EEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 221 FCGEELLAWALLSKSTVNLPSSTRTVKALIE-VEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 221 ~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~-~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
+|||.+ |+... .|+++++|..+ ++++.|+++.|..++-...++..+......|
T Consensus 347 ~FGE~a----l~~ed-----vRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~~r 400 (732)
T KOG0614|consen 347 YFGERA----LLGED-----VRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDEER 400 (732)
T ss_pred hhhHHH----hhccC-----ccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccchhh
Confidence 999994 44444 79999999998 9999999999999999999998776666655
No 11
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.03 E-value=2.7e-09 Score=84.07 Aligned_cols=80 Identities=28% Similarity=0.299 Sum_probs=65.9
Q ss_pred EEecCC---CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEc
Q 045637 182 SLSTLR---AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLR 258 (392)
Q Consensus 182 ~~y~~G---~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~ 258 (392)
.++.+| +.+|||++|.+++...+...... .+..+++|++||+..+ +... ++..+++|.++|+++.|+
T Consensus 9 ~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~-~~~~~~~g~~~g~~~~----~~~~-----~~~~~~~a~~~~~~~~i~ 78 (91)
T PF00027_consen 9 VIYRQGDPCDHIYIILSGEVKVSSINEDGKEQ-IIFFLGPGDIFGEIEL----LTGK-----PSPFTVIALTDSEVLRIP 78 (91)
T ss_dssp EEEETTSBESEEEEEEESEEEEEEETTTSEEE-EEEEEETTEEESGHHH----HHTS-----BBSSEEEESSSEEEEEEE
T ss_pred EEEeCCCcCCEEEEEEECceEEEeceecceee-eecceeeeccccceee----cCCC-----ccEEEEEEccCEEEEEEe
Confidence 345555 99999999999999776544332 4578999999999954 3333 689999999999999999
Q ss_pred HHHHHHHHHHhHH
Q 045637 259 AEDLKFVANQFRR 271 (392)
Q Consensus 259 ~edf~~ll~~fP~ 271 (392)
+++|..+++++|+
T Consensus 79 ~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 79 REDFLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHHHHSHH
T ss_pred HHHHHHHHHhCcC
Confidence 9999999999995
No 12
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=98.97 E-value=1.2e-08 Score=92.67 Aligned_cols=114 Identities=22% Similarity=0.269 Sum_probs=91.4
Q ss_pred hcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechh
Q 045637 158 VRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEEL 226 (392)
Q Consensus 158 L~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~ 226 (392)
+...+.|..+++..+..+......+.+++| +.+|+|.+|.|+++..+ +|++. .+..++|||+|||..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~--~~~~~~~g~~fg~~~ 79 (214)
T COG0664 2 LKENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREI--ILGFLGPGDFFGELA 79 (214)
T ss_pred cccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEE--EEEEecCCchhhhHH
Confidence 345677777788888888788888888888 89999999999999754 34443 347899999999994
Q ss_pred hHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 227 LAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 227 L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
+ +... +++.+++|+++|+++.+++++|..++.+.|.+....++...+
T Consensus 80 l----~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~ 126 (214)
T COG0664 80 L----LGGD-----PRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLAR 126 (214)
T ss_pred H----hcCC-----CccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 4 3332 789999999999999999999999888788887666655544
No 13
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=98.87 E-value=1.9e-08 Score=94.38 Aligned_cols=99 Identities=17% Similarity=0.105 Sum_probs=77.7
Q ss_pred HHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCC
Q 045637 172 PDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLP 240 (392)
Q Consensus 172 L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~ 240 (392)
...|....+.+.|.+| +.+|||.+|.|++...+ +|++. .+..+.||++||+..+ +.. .
T Consensus 24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~--~~~~~~~g~~~G~~~~----~~~-----~ 92 (226)
T PRK10402 24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVS--LIDFFAAPCFIGEIEL----IDK-----D 92 (226)
T ss_pred CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEe--eeeecCCCCeEEeehh----hcC-----C
Confidence 3356666677777777 89999999999998654 34443 3578999999999843 333 3
Q ss_pred CcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHh
Q 045637 241 SSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTF 281 (392)
Q Consensus 241 ~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~ 281 (392)
+++.+++|.++|+++.+++++|..++.++|.+....++...
T Consensus 93 ~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~ 133 (226)
T PRK10402 93 HETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLS 133 (226)
T ss_pred CCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHH
Confidence 78899999999999999999999999999998876555433
No 14
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=98.85 E-value=3.8e-08 Score=92.42 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=87.9
Q ss_pred hcccccCCCCChhhHHHHhhhcEE-EEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeech
Q 045637 158 VRRVPFFSQMDDQLPDALCERLVS-SLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 158 L~~vplF~~l~~~~L~~L~~~lk~-~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~ 225 (392)
+++.+.|..++++.++.|....+. ..|.+| +.+|||.+|.|+++..+ +|++. .+..+.|||+||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~--i~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQ--ITGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEE--EEEeccCCceeccc
Confidence 556666667999999999988764 568888 99999999999999754 44443 34678999999987
Q ss_pred hhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHh
Q 045637 226 LLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTF 281 (392)
Q Consensus 226 ~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~ 281 (392)
.+ ... .+..++.|.++++++.|++++|..++.++|.+....++...
T Consensus 93 ~~----~~~------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~ 138 (235)
T PRK11161 93 AI----GSG------QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMS 138 (235)
T ss_pred cc----cCC------CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHH
Confidence 33 211 34568999999999999999999999999998866555443
No 15
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.85 E-value=2.6e-08 Score=102.80 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=93.1
Q ss_pred HHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeec
Q 045637 155 LDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGE 224 (392)
Q Consensus 155 ~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE 224 (392)
.+++.+.|.|+.++++.+++|...+...+|.+| ..||+|.+|.|++...+|. .+..+..||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~-----v~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE-----VLDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe-----eeeeeccCccccc
Confidence 468899999999999999999999999999999 8999999999999986654 3588999999999
Q ss_pred hhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHH
Q 045637 225 ELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHS 274 (392)
Q Consensus 225 ~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~ 274 (392)
..| .+.. +...++.|.+++-+|.|+++.|.++..++|+++.
T Consensus 81 ~~l----~~~~-----~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ 121 (610)
T COG2905 81 SSL----FTEL-----NKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFAD 121 (610)
T ss_pred hhh----cccC-----CCcceeEeeccceEEecCHHHHHHHHHhCcHHHH
Confidence 954 4433 4457788888999999999999999999999874
No 16
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.85 E-value=6.2e-09 Score=82.02 Aligned_cols=54 Identities=6% Similarity=0.227 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 45 LEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 45 ~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
...|..++||++.|+||+||||+.|.+...++++++.+++|+.+++++++.+.+
T Consensus 22 ~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~ 75 (79)
T PF07885_consen 22 KWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLAS 75 (79)
T ss_dssp TTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557899999999999999999999999999999999999999999999998754
No 17
>PLN02868 acyl-CoA thioesterase family protein
Probab=98.81 E-value=2.8e-08 Score=101.82 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=87.2
Q ss_pred HHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeec
Q 045637 155 LDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGE 224 (392)
Q Consensus 155 ~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE 224 (392)
.++++++|+|++++++.++.|+.+++.+.|.+| +.+|||++|.|++...+++.+ ..+..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge--~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEES--RPEFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCc--EEEEEeCCCCEeeh
Confidence 456889999999999999999999999999999 899999999999987653322 34678999999996
Q ss_pred hhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhH
Q 045637 225 ELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFR 270 (392)
Q Consensus 225 ~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP 270 (392)
. + .. .++..+++|.++|+++.|++++|..+....+
T Consensus 85 ~-l-----~~-----~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L-----SG-----SVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h-----CC-----CCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 5 2 12 2689999999999999999999988776554
No 18
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.68 E-value=4.3e-08 Score=96.16 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=91.8
Q ss_pred HHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeec
Q 045637 155 LDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGE 224 (392)
Q Consensus 155 ~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE 224 (392)
.+.+++.-+|++++++.+..+.+.|.++.+..| +.||+|-+|.++|+..+ . -+..++||..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~--~----~v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNG--T----YVTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECC--e----EEeeeCCCCchhh
Confidence 567888999999999999999999999999998 99999999999999742 2 2478999999999
Q ss_pred hhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHH
Q 045637 225 ELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKL 277 (392)
Q Consensus 225 ~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~l 277 (392)
.+ |..+. ||.+||+|.|++.++.|++..|..++-.......++.
T Consensus 195 lA----Lmyn~-----PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy 238 (368)
T KOG1113|consen 195 LA----LMYNP-----PRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMY 238 (368)
T ss_pred hH----hhhCC-----CcccceeeccccceEEEeeceeEEEeeccchhhhhhh
Confidence 94 44454 9999999999999999999999988865554444433
No 19
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=98.68 E-value=1.8e-07 Score=84.83 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=71.9
Q ss_pred EEecCC---CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEE
Q 045637 182 SLSTLR---AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVL 257 (392)
Q Consensus 182 ~~y~~G---~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L 257 (392)
.+|.+| +.+|+|.+|.|+++..+ +|++ ..+..++||++||+..+ +... ..++..+++|.++|+++.+
T Consensus 3 ~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e--~~l~~~~~g~~~G~~~~----~~~~---~~~~~~~~~A~~~~~v~~i 73 (193)
T TIGR03697 3 TIFFPGDPAEKVYFLRRGAVKLSRVYESGEE--ITVALLRENSVFGVLSL----ITGH---RSDRFYHAVAFTRVELLAV 73 (193)
T ss_pred ceecCCCCCCcEEEEEecEEEEEEeCCCCcE--eeeEEccCCCEeeeeee----ccCC---CCccceEEEEecceEEEEe
Confidence 467778 89999999999998654 3444 34588999999999844 2221 1134578999999999999
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 258 RAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 258 ~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
++++|..++.++|++....++...+
T Consensus 74 ~~~~~~~l~~~~p~l~~~~~~~l~~ 98 (193)
T TIGR03697 74 PIEQVEKAIEEDPDLSMLLLQGLSS 98 (193)
T ss_pred eHHHHHHHHHHChHHHHHHHHHHHH
Confidence 9999999999999998777765543
No 20
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=98.59 E-value=5.2e-07 Score=85.03 Aligned_cols=96 Identities=16% Similarity=0.071 Sum_probs=77.3
Q ss_pred HHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCC
Q 045637 173 DALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPS 241 (392)
Q Consensus 173 ~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~ 241 (392)
.+++...+...|.+| +.+|||.+|.|+++..+ +|++. .+..+.+|++||+.. . .+
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~--i~~~~~~Gd~fG~~~-------~-----~~ 97 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQ--IGAFHLPGDVFGLES-------G-----ST 97 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEE--EEEEecCCceecccC-------C-----Cc
Confidence 345667778888888 89999999999998654 34432 346789999999651 1 25
Q ss_pred cceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 242 STRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 242 rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
+..+++|+++|+++.|+.++|..++..+|.+....++.+.+
T Consensus 98 ~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~ 138 (230)
T PRK09391 98 HRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAG 138 (230)
T ss_pred CCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHH
Confidence 67999999999999999999999999999999877766654
No 21
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.51 E-value=2.1e-07 Score=91.33 Aligned_cols=112 Identities=16% Similarity=0.240 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCC
Q 045637 149 IQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRP 218 (392)
Q Consensus 149 I~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~ 218 (392)
-++.+|.++|+++|+++.++......+++.+.++.|.+| +.+|+|.+|.|.+...-++ +.+ .++.
T Consensus 233 kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~----v~v-kl~~ 307 (368)
T KOG1113|consen 233 KKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG----VEV-KLKK 307 (368)
T ss_pred hhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC----eEE-Eech
Confidence 457788999999999999999999999999999999999 8999999999999864433 234 8999
Q ss_pred CCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHH
Q 045637 219 GDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHS 274 (392)
Q Consensus 219 Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~ 274 (392)
||+|||.+| ..+- +|.+||.|.+...+..++++.|+.++.-..++-.
T Consensus 308 ~dyfge~al----~~~~-----pr~Atv~a~~~~kc~~~dk~~ferllgpc~dilk 354 (368)
T KOG1113|consen 308 GDYFGELAL----LKNL-----PRAATVVAKGRLKCAKLDKPRFERLLGPCQDILK 354 (368)
T ss_pred hhhcchHHH----Hhhc-----hhhceeeccCCceeeeeChHHHHHHhhHHHHHHH
Confidence 999999954 4443 8899999999999999999999999987766544
No 22
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=98.49 E-value=1.3e-07 Score=96.89 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=95.0
Q ss_pred HHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCC
Q 045637 150 QRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPG 219 (392)
Q Consensus 150 ~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~G 219 (392)
...+..+.|.+-.|+++++...+..|+.+|-+..|.+| +.||.+..|+++|+.. |+ .++.+++|
T Consensus 148 ~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~--g~----ll~~m~~g 221 (732)
T KOG0614|consen 148 AKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSRE--GK----LLGKMGAG 221 (732)
T ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeC--Ce----eeeccCCc
Confidence 35667788999999999999999999999999999998 8999999999999973 33 35899999
Q ss_pred CeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHH
Q 045637 220 DFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLH 273 (392)
Q Consensus 220 d~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~ 273 (392)
..|||.++ +.+. +|++||+|+++|.+++|+++-|+.++..--.-.
T Consensus 222 tvFGELAI----Lync-----tRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r 266 (732)
T KOG0614|consen 222 TVFGELAI----LYNC-----TRTASVRALTDVRLWAIDREVFQAIMMRTGLER 266 (732)
T ss_pred hhhhHHHH----HhCC-----cchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999954 4555 899999999999999999999999997665444
No 23
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.31 E-value=5.3e-07 Score=92.77 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=73.4
Q ss_pred CcchHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc---------ccccCccccCCCC
Q 045637 41 SSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY---------RPICNPLLHRQIP 111 (392)
Q Consensus 41 ~~s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~---------~~i~~~M~~r~lp 111 (392)
..+-+.-|--++|||+.|+||+||||.+|.+..-++.+.+..++|+.+||+--|.+++ ..=++|-++|+.-
T Consensus 263 ~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQKHf~rrr~pA 342 (654)
T KOG1419|consen 263 TNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQKHFNRRRNPA 342 (654)
T ss_pred ccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHHhhcchH
Confidence 3456779999999999999999999999999999999999999999999999999888 4556677788888
Q ss_pred hhHHHHHHhHhH
Q 045637 112 QNLRELVRQFVP 123 (392)
Q Consensus 112 ~~Lr~RVr~y~~ 123 (392)
..|.+-.-+||-
T Consensus 343 A~LIQc~WR~ya 354 (654)
T KOG1419|consen 343 ASLIQCAWRYYA 354 (654)
T ss_pred HHHHHHHHHHHh
Confidence 888888888864
No 24
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.25 E-value=1e-05 Score=73.92 Aligned_cols=77 Identities=21% Similarity=0.209 Sum_probs=57.3
Q ss_pred CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHH
Q 045637 188 AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVA 266 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll 266 (392)
+.+|+|++|.|+++..+ +|++. .+..+.|||+||+..+ .. .+++.++.|+++|+++.|+.++|
T Consensus 27 ~~~y~I~~G~vr~~~~~~~G~e~--~l~~~~~Gd~~G~~~~----~~------~~~~~~~~A~~~~~v~~i~~~~~---- 90 (202)
T PRK13918 27 DMLYRVRSGLVRLHTVDDEGNAL--TLRYVRPGEYFGEEAL----AG------AERAYFAEAVTDSRIDVLNPALM---- 90 (202)
T ss_pred CeEEEEEeeEEEEEEECCCCCEE--EEEEecCCCeechHHh----cC------CCCCceEEEcCceEEEEEEHHHc----
Confidence 46999999999998654 44443 4578999999998732 22 15688999999999999999987
Q ss_pred HHhHHHHHHHHHHHhh
Q 045637 267 NQFRRLHSKKLQHTFC 282 (392)
Q Consensus 267 ~~fP~l~~~~lq~~~r 282 (392)
.|.+....++...+
T Consensus 91 --~~~~~~~l~~~l~~ 104 (202)
T PRK13918 91 --SAEDNLVLTQHLVR 104 (202)
T ss_pred --ChhhHHHHHHHHHH
Confidence 45555555544443
No 25
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.09 E-value=9.7e-07 Score=90.20 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 45 LEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 45 ~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
++.--.|+|||+.|||||||||++|.|..-++++...+++|+++.|+-|.-|.+
T Consensus 375 FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~ 428 (477)
T KOG3713|consen 375 FTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVN 428 (477)
T ss_pred CccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhh
Confidence 556667999999999999999999999999999999999999999988887765
No 26
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.05 E-value=4.9e-06 Score=84.89 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 45 LEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 45 ~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
...+..|+||++.|+||+||||+.|.+...++|+++++++|+.+|++.++.+..
T Consensus 166 ~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 166 IESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred CCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999999999999999999999999999999999988765
No 27
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.45 E-value=9.1e-05 Score=74.53 Aligned_cols=52 Identities=8% Similarity=0.220 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
-+..++|++++++||+|||+++|.+...++|+|+..++|+-++..++++++.
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~ 166 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGK 166 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999999999999999999887
No 28
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.44 E-value=2e-05 Score=81.56 Aligned_cols=126 Identities=18% Similarity=0.211 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc---------ccccCccccCCC---Chh
Q 045637 46 EKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY---------RPICNPLLHRQI---PQN 113 (392)
Q Consensus 46 ~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~---------~~i~~~M~~r~l---p~~ 113 (392)
--|-.|+|+-+.||+||||||+...+..-++|.+|.++.|+..||.-+..|.. .+.+.---++++ ..-
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehgkkhivvcghi 366 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHGKKHIVVCGHI 366 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcCCeeEEEecce
Confidence 36899999999999999999999999999999999999999999987776665 111111111111 112
Q ss_pred HHHHHHhHhHhHhhcc-CCCCHH-HHHHhCChhhHHHHHHHHHHHHhcccccCCC--CChhhHHH
Q 045637 114 LRELVRQFVPYKWLAT-RGVDEE-SILHALPTDLRRDIQRHLCLDLVRRVPFFSQ--MDDQLPDA 174 (392)
Q Consensus 114 Lr~RVr~y~~y~w~~~-~g~dee-~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~--l~~~~L~~ 174 (392)
.-+-|-+|++-.-++. ..+|-| -.|...|++|.-+ .++..-..+|.||++ |++..|..
T Consensus 367 tyesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 367 TYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred eHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhhh
Confidence 2345666665443333 456644 4578899998755 455566788999986 66655443
No 29
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.29 E-value=0.0006 Score=74.17 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=79.2
Q ss_pred hHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEec-CCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCC
Q 045637 171 LPDALCERLVSSLSTLR----------AQMLFIISGRLESSTT-NGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNL 239 (392)
Q Consensus 171 ~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~-~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~ 239 (392)
++..+-..+......+| +++|+|+.|+++.... .++++.+ +..++.||.+|+...+ .+.
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~l----t~~---- 569 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEML----TKQ---- 569 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHHh----hcC----
Confidence 34444444455555555 9999999999998854 4555544 4789999999999643 222
Q ss_pred CCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 045637 240 PSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFCFY 284 (392)
Q Consensus 240 ~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r~~ 284 (392)
+|..||.|+-++|+..||..-|..+..+||.+-.+..+..++.+
T Consensus 570 -~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 570 -PRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred -CccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999887776666554
No 30
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00024 Score=72.27 Aligned_cols=85 Identities=13% Similarity=0.210 Sum_probs=75.2
Q ss_pred chHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc--------ccccCccccCCCChhH
Q 045637 43 KFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY--------RPICNPLLHRQIPQNL 114 (392)
Q Consensus 43 s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~--------~~i~~~M~~r~lp~~L 114 (392)
+.-.-|+.++|....|..++||||++|.+..-+..+++.-++|..+.|.+|+-|.. +.+.+||-..+|.+++
T Consensus 283 ~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLeLt~aEKhVhNFMmDtqLTk~~ 362 (489)
T KOG3684|consen 283 DVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLELTKAEKHVHNFMMDTQLTKEH 362 (489)
T ss_pred hhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567999999999999999999999999999999999999999999999999998 7888888888888888
Q ss_pred HHHHHhHhHhHhh
Q 045637 115 RELVRQFVPYKWL 127 (392)
Q Consensus 115 r~RVr~y~~y~w~ 127 (392)
++-..+=.+..|.
T Consensus 363 KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 363 KNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHH
Confidence 8776666666663
No 31
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=97.21 E-value=1.5e-05 Score=78.56 Aligned_cols=56 Identities=11% Similarity=0.299 Sum_probs=48.3
Q ss_pred chHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 43 KFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 43 s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
+-+...-.+||||+.|||||||||..|.+.+-++.-.++.|.|++-.|+-+--|.+
T Consensus 389 S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVs 444 (507)
T KOG1545|consen 389 SHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVS 444 (507)
T ss_pred cCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEe
Confidence 44555567899999999999999999999999999999999999888876666655
No 32
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=97.19 E-value=0.00049 Score=61.31 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=50.7
Q ss_pred ccCcchHHHHHHHHHHHHHHhccCcCCccccC-----chhHHHHH-HHHHHHHHHHHHHHHHhh
Q 045637 39 VVSSKFLEKYFYCLWWGLQNLSSYAQSLAIST-----YIGETLLA-VLISILNLVLLAHLIGNM 96 (392)
Q Consensus 39 i~~~s~~~kY~~slYWal~tlsTvGygd~~~~-----~~~E~if~-i~i~i~G~~lfa~lIG~i 96 (392)
....+.++.|..|+||.++++|+.|+|+..+. +..+.++. +++.+++.++++++||.|
T Consensus 137 ~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 137 IYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 33456678899999999999999999999886 78999998 778888889999999986
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=96.58 E-value=0.0042 Score=62.24 Aligned_cols=54 Identities=11% Similarity=0.178 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhccCcCCc--cccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 45 LEKYFYCLWWGLQNLSSYAQSL--AISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 45 ~~kY~~slYWal~tlsTvGygd--~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
...+..+|++++.|+||+|||. ++|....-.++.++=+++|+++.|+++|-+-.
T Consensus 82 ~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfa 137 (336)
T PF01007_consen 82 VNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFA 137 (336)
T ss_dssp -TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999998 56777777788888999999999999998876
No 34
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=95.52 E-value=0.001 Score=66.50 Aligned_cols=58 Identities=9% Similarity=0.221 Sum_probs=50.8
Q ss_pred CcchHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 41 SSKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 41 ~~s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
+.+-++..-.+||+.+.||||+||||.+|.+..-.+|..+..+.|+++.|+-+.-|.+
T Consensus 350 ~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVS 407 (632)
T KOG4390|consen 350 SATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVS 407 (632)
T ss_pred cccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEe
Confidence 3455566678999999999999999999999999999999999999998887777766
No 35
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.0051 Score=60.38 Aligned_cols=59 Identities=10% Similarity=0.162 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhccCcCCccccCch--------hHHHHHHHHHHHHHHHHHHHHHhhcc--ccccCcc
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYI--------GETLLAVLISILNLVLLAHLIGNMQY--RPICNPL 105 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~--------~E~if~i~i~i~G~~lfa~lIG~i~~--~~i~~~M 105 (392)
-|+.|+|+-+.|+||+|+||.++... .=+.|+.+.+++|+.+++-+++-+.- ..++.||
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~~ 254 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAED 254 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 58999999999999999999987432 23567888889999998888776554 4444444
No 36
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.10 E-value=0.041 Score=58.71 Aligned_cols=103 Identities=17% Similarity=0.258 Sum_probs=75.2
Q ss_pred HHHHHhcccccCCCCChhhHHHHhhhcEEE--------EecCC---CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCe
Q 045637 153 LCLDLVRRVPFFSQMDDQLPDALCERLVSS--------LSTLR---AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDF 221 (392)
Q Consensus 153 l~~~lL~~vplF~~l~~~~L~~L~~~lk~~--------~y~~G---~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~ 221 (392)
..+++..+.|-|.+|+-.....||..|... +..-| +.-+.|+.|.|+++..+|.+ ..+.-|+-
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mGnS 351 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMGNS 351 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeecccc
Confidence 346788889999999988888888766543 44444 99999999999999999876 46888999
Q ss_pred eechhhHHHhhhcCCCCCCCcceEEE-EeeeEEEEEEcHHHHHHHHHHhH
Q 045637 222 CGEELLAWALLSKSTVNLPSSTRTVK-ALIEVEAFVLRAEDLKFVANQFR 270 (392)
Q Consensus 222 FGE~~L~~aL~~~~~~~~~~rt~TV~-A~t~~el~~L~~edf~~ll~~fP 270 (392)
||-+.- ++.+ .-...++ -+.+|+..+|...|+-.++.+--
T Consensus 352 FG~~PT---~dkq------ym~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 352 FGAEPT---PDKQ------YMIGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred cCCCCC---cchh------hhhhhhheecccceEEEeehhhHHHHHHHHH
Confidence 997721 1100 1111222 24689999999999999987643
No 37
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=94.98 E-value=0.22 Score=46.61 Aligned_cols=69 Identities=12% Similarity=0.023 Sum_probs=52.0
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHH
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVAN 267 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~ 267 (392)
..++||.+|.|.+...++ +.+.+..+-.+||-... + .+. ......+|.++|+++.|+.++|.++++
T Consensus 42 ~~~~ll~~G~vsirr~d~-----ll~~t~~aP~IlGl~~~---~-~~~-----~~~~~l~ae~~c~~~~i~~~~~~~iie 107 (207)
T PRK11832 42 EDTFVILEGVISLRREEN-----VLIGITQAPYIMGLADG---L-MKN-----DIPYKLISEGNCTGYHLPAKQTITLIE 107 (207)
T ss_pred ceEEEEEeceEEEEecCC-----eEEEeccCCeEeecccc---c-CCC-----CceEEEEEcCccEEEEeeHHHHHHHHH
Confidence 679999999999964332 23467777788996521 1 111 334789999999999999999999999
Q ss_pred HhH
Q 045637 268 QFR 270 (392)
Q Consensus 268 ~fP 270 (392)
++.
T Consensus 108 ~~~ 110 (207)
T PRK11832 108 QNQ 110 (207)
T ss_pred Hhc
Confidence 775
No 38
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.97 E-value=0.0024 Score=62.59 Aligned_cols=51 Identities=6% Similarity=0.199 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQ 97 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~ 97 (392)
|+.-+|||+.+.+||+|||-.+|.|.+-++|+|+..++|+-+--..+..+.
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 788899999999999999999999999999999999999766555444433
No 39
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=94.56 E-value=0.33 Score=53.67 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=70.0
Q ss_pred EecCC---CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcH
Q 045637 183 LSTLR---AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRA 259 (392)
Q Consensus 183 ~y~~G---~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~ 259 (392)
+|.+| +.+|.+.+|.+++.-.++..+. ..+.++.||+-|--.+=+...++.. ..+.++..++|.++|.+..++.
T Consensus 126 i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~-~llk~V~~G~~~tSllSiLd~l~~~--ps~~~~i~akA~t~~tv~~~p~ 202 (1158)
T KOG2968|consen 126 IFKPGESDDSIYVVISGELTVHIRNGDGKE-YLLKTVPPGGSFTSLLSILDSLPGF--PSLSRTIAAKAATDCTVARIPY 202 (1158)
T ss_pred eccCCCCCceEEEEeccceEEEecCCCCce-eeEeeccCCCchHhHHHHHHhccCC--CcccceeeeeeecCceEEEecc
Confidence 55555 9999999999999877654433 3468899997665432111222221 1235778999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHh
Q 045637 260 EDLKFVANQFRRLHSKKLQHTF 281 (392)
Q Consensus 260 edf~~ll~~fP~l~~~~lq~~~ 281 (392)
+.|..+...||+-..+.+|-..
T Consensus 203 ~sF~~~~~k~P~s~iriiQvvm 224 (1158)
T KOG2968|consen 203 TSFRESFHKNPESSIRIIQVVM 224 (1158)
T ss_pred chhhhhhccChHHHHHHHHHHH
Confidence 9999999999998877777554
No 40
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=92.91 E-value=0.013 Score=58.87 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchhHH--------HHHHHHHHHHHHHHHHHH
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIGET--------LLAVLISILNLVLLAHLI 93 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~E~--------if~i~i~i~G~~lfa~lI 93 (392)
-|+.|+|+++.++||+|+||++|.+.... .+..+..++|...++.++
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 68889999999999999999999987755 577888888888887665
No 41
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=92.72 E-value=1.2 Score=39.52 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=68.3
Q ss_pred CCChhhHHHHhhh-cEEEEecCC-----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhh
Q 045637 166 QMDDQLPDALCER-LVSSLSTLR-----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLS 233 (392)
Q Consensus 166 ~l~~~~L~~L~~~-lk~~~y~~G-----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~ 233 (392)
+.+.+.-..|+.+ .+.....+| +.+=++++|++.|+.. |+ -+..+.|-.|..-.... ++.+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~----fLH~I~p~qFlDSPEW~-s~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GR----FLHYIYPYQFLDSPEWE-SLRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CE----eeEeecccccccChhhh-cccc
Confidence 4566666666665 555555666 9999999999999963 23 24667776665433211 1101
Q ss_pred cCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHH
Q 045637 234 KSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLH 273 (392)
Q Consensus 234 ~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~ 273 (392)
.....-..|+.|.++|..+..+++.++.++...|-++
T Consensus 87 ---s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~ 123 (153)
T PF04831_consen 87 ---SEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLA 123 (153)
T ss_pred ---CCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHH
Confidence 1112457899999999999999999999999999776
No 42
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=88.53 E-value=0.49 Score=27.57 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHh
Q 045637 292 PACFIQAAWRHCKKRKM 308 (392)
Q Consensus 292 ~~~~iq~~w~~~~~r~~ 308 (392)
|+..||+.||.|.-||.
T Consensus 3 aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78899999999987763
No 43
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=82.61 E-value=1.3 Score=27.15 Aligned_cols=19 Identities=53% Similarity=0.627 Sum_probs=15.6
Q ss_pred hhhhHHHHHHHHHHHHHHh
Q 045637 290 TWPACFIQAAWRHCKKRKM 308 (392)
Q Consensus 290 ~~~~~~iq~~w~~~~~r~~ 308 (392)
+-++..||+.||.|.-|+.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~ 21 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKR 21 (26)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4578999999999987663
No 44
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=80.18 E-value=2 Score=33.23 Aligned_cols=30 Identities=17% Similarity=0.511 Sum_probs=25.0
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++.+|++|.|.+...+|.. ..+++||.|=
T Consensus 26 ~E~~~vleG~v~it~~~G~~------~~~~aGD~~~ 55 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDEDGET------VTFKAGDAFF 55 (74)
T ss_dssp EEEEEEEEEEEEEEETTTEE------EEEETTEEEE
T ss_pred CEEEEEEEeEEEEEECCCCE------EEEcCCcEEE
Confidence 89999999999999865433 6799999874
No 45
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=79.23 E-value=3.5 Score=30.48 Aligned_cols=29 Identities=28% Similarity=0.621 Sum_probs=22.6
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++++|++|++.+.. ++.. ..+++||.+=
T Consensus 20 ~e~~~vl~G~~~~~~-~~~~------~~l~~Gd~~~ 48 (71)
T PF07883_consen 20 DEFFYVLSGEGTLTV-DGER------VELKPGDAIY 48 (71)
T ss_dssp EEEEEEEESEEEEEE-TTEE------EEEETTEEEE
T ss_pred CEEEEEEECCEEEEE-ccEE------eEccCCEEEE
Confidence 489999999999993 4432 6799998753
No 46
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=78.85 E-value=0.31 Score=51.12 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhccCcCCccccCchhHHHHHHHH
Q 045637 49 FYCLWWGLQNLSSYAQSLAISTYIGETLLAVLI 81 (392)
Q Consensus 49 ~~slYWal~tlsTvGygd~~~~~~~E~if~i~i 81 (392)
+.++||.+.|.+||||||..|....-.++.+++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~ 251 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVIL 251 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHH
Confidence 456888899999999999988755544444333
No 47
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=75.90 E-value=5.3 Score=33.31 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=34.5
Q ss_pred CCChhHHHHHHhHhHhHhhc----------cCCCCHHHHHHhCChhhHHHHHHH
Q 045637 109 QIPQNLRELVRQFVPYKWLA----------TRGVDEESILHALPTDLRRDIQRH 152 (392)
Q Consensus 109 ~lp~~Lr~RVr~y~~y~w~~----------~~g~dee~ll~~LP~~Lr~dI~~~ 152 (392)
-||+++|..|...+.-.-.. ....|...+|..||++||++|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 48999999999988765321 233567889999999999998764
No 48
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=69.13 E-value=5.6 Score=26.50 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHHHhHHh
Q 045637 291 WPACFIQAAWRHCKKRKMAKN 311 (392)
Q Consensus 291 ~~~~~iq~~w~~~~~r~~~~~ 311 (392)
.|+-.||.-||+.++||+.+.
T Consensus 10 YAt~lI~dyfr~~K~rk~~~~ 30 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKEQEQ 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999998653
No 49
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=67.96 E-value=4 Score=41.43 Aligned_cols=54 Identities=17% Similarity=0.307 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhccCcCCccccC--chhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 45 LEKYFYCLWWGLQNLSSYAQSLAIST--YIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 45 ~~kY~~slYWal~tlsTvGygd~~~~--~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
..-+..+|-|++-|=+|+|||--..+ -+.-++..++=+|+|+++-|+++|-|-.
T Consensus 110 V~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~a 165 (400)
T KOG3827|consen 110 VHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFA 165 (400)
T ss_pred ccchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999976443 3555666677789999999999999887
No 50
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=67.08 E-value=6.3 Score=35.67 Aligned_cols=53 Identities=23% Similarity=0.393 Sum_probs=40.8
Q ss_pred ccccCccccCCCChhHHHHHHhHhHhHhhc--cCCCCHHHHHHhC--ChhhHHHHHHHH
Q 045637 99 RPICNPLLHRQIPQNLRELVRQFVPYKWLA--TRGVDEESILHAL--PTDLRRDIQRHL 153 (392)
Q Consensus 99 ~~i~~~M~~r~lp~~Lr~RVr~y~~y~w~~--~~g~dee~ll~~L--P~~Lr~dI~~~l 153 (392)
++++++++ ++|++-++.+.+||+-.... ..|.+|++++++| |+++-+++..+.
T Consensus 8 ~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 8 NELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 35667775 59999999999999876654 3678999999997 777777766554
No 51
>COG4709 Predicted membrane protein [Function unknown]
Probab=62.67 E-value=15 Score=33.93 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=49.5
Q ss_pred ccccCccccCCCChhHHHHHHhHhHhHhhcc--CCCCHHHHHHhC--ChhhHHHHHHHHHHHHhcccccCCCCCh
Q 045637 99 RPICNPLLHRQIPQNLRELVRQFVPYKWLAT--RGVDEESILHAL--PTDLRRDIQRHLCLDLVRRVPFFSQMDD 169 (392)
Q Consensus 99 ~~i~~~M~~r~lp~~Lr~RVr~y~~y~w~~~--~g~dee~ll~~L--P~~Lr~dI~~~l~~~lL~~vplF~~l~~ 169 (392)
+++++|+ +++|++.++.+..||+-++... .|.+|+++.++| |.++-+|+....-.+-...-|-+.+.+.
T Consensus 8 ~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ 80 (195)
T COG4709 8 NELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRR 80 (195)
T ss_pred HHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHH
Confidence 3566666 4699999999988887665443 688899999987 6677777777665555555565655554
No 52
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=60.46 E-value=51 Score=28.21 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=24.4
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeech
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~ 225 (392)
.++++|++|++.+...+++++ ..|++||.+--.
T Consensus 56 ~E~~yVL~G~~~~~~i~~g~~-----~~L~aGD~i~~~ 88 (125)
T PRK13290 56 LEAVYCIEGEGEVEDLATGEV-----HPIRPGTMYALD 88 (125)
T ss_pred EEEEEEEeCEEEEEEcCCCEE-----EEeCCCeEEEEC
Confidence 679999999999983222332 679999987644
No 53
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=55.76 E-value=21 Score=31.93 Aligned_cols=31 Identities=32% Similarity=0.640 Sum_probs=25.4
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeech
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~ 225 (392)
++|+.|++|+..+.. +++. ..|+|||+-|--
T Consensus 65 dEfv~ILeGE~~l~~-d~~e------~~lrpGD~~gFp 95 (161)
T COG3837 65 DEFVYILEGEGTLRE-DGGE------TRLRPGDSAGFP 95 (161)
T ss_pred ceEEEEEcCceEEEE-CCee------EEecCCceeecc
Confidence 999999999999886 3333 579999998854
No 54
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=54.71 E-value=25 Score=31.54 Aligned_cols=33 Identities=18% Similarity=0.444 Sum_probs=26.2
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++|++++|.+.+...++++ +....|++||+|=
T Consensus 49 dE~FyqleG~~~l~v~d~g~---~~~v~L~eGd~fl 81 (159)
T TIGR03037 49 EEFFYQLKGEMYLKVTEEGK---REDVPIREGDIFL 81 (159)
T ss_pred ceEEEEEcceEEEEEEcCCc---EEEEEECCCCEEE
Confidence 99999999999997766554 1236899999873
No 55
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=54.57 E-value=23 Score=30.10 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=24.1
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~F 222 (392)
+++.-|++|.+.+...+|.. ..+++||.|
T Consensus 64 ~E~chil~G~v~~T~d~Ge~------v~~~aGD~~ 92 (116)
T COG3450 64 DEFCHILEGRVEVTPDGGEP------VEVRAGDSF 92 (116)
T ss_pred ceEEEEEeeEEEEECCCCeE------EEEcCCCEE
Confidence 89999999999998755433 679999976
No 56
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=53.09 E-value=32 Score=28.58 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=32.2
Q ss_pred CCChhHHHHHHhHhHhHhhcc---------CCC----CHHHHHHhCChhhHHHHHHHHHHH
Q 045637 109 QIPQNLRELVRQFVPYKWLAT---------RGV----DEESILHALPTDLRRDIQRHLCLD 156 (392)
Q Consensus 109 ~lp~~Lr~RVr~y~~y~w~~~---------~g~----dee~ll~~LP~~Lr~dI~~~l~~~ 156 (392)
-||+++|.+|..-+...-... .+- -..++|..||++||.+|.......
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 489999999965544321100 000 135899999999999999876554
No 57
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=51.24 E-value=20 Score=39.15 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=64.1
Q ss_pred ChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeee
Q 045637 142 PTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFF 211 (392)
Q Consensus 142 P~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~ 211 (392)
|+.||......--...|++...|+++-..-|.++|...+...|+.. .+-|++++|.|-+..
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g--------- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG--------- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec---------
Confidence 3444433332222346788889999999999999998877666554 899999999998863
Q ss_pred eeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEc
Q 045637 212 NSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLR 258 (392)
Q Consensus 212 ~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~ 258 (392)
..+-|-..||... . ..|+..+--+.++|..+++
T Consensus 94 --qi~mp~~~fgkr~------g------~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 94 --QIYMPYGCFGKRT------G------QNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred --ceecCcccccccc------c------cccccceeeecccceeeee
Confidence 1244445677661 1 1477777778888887773
No 58
>CHL00038 psbL photosystem II protein L
Probab=47.34 E-value=27 Score=23.50 Aligned_cols=10 Identities=40% Similarity=0.776 Sum_probs=7.2
Q ss_pred HHHHHHHHHH
Q 045637 49 FYCLWWGLQN 58 (392)
Q Consensus 49 ~~slYWal~t 58 (392)
=.|+|||+..
T Consensus 15 RTSLy~GLLl 24 (38)
T CHL00038 15 RTSLYWGLLL 24 (38)
T ss_pred hhhHHHHHHH
Confidence 3688998763
No 59
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=46.91 E-value=52 Score=27.90 Aligned_cols=39 Identities=13% Similarity=0.289 Sum_probs=29.3
Q ss_pred hhcEEEEecCC-----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCee
Q 045637 177 ERLVSSLSTLR-----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 177 ~~lk~~~y~~G-----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~F 222 (392)
..++...+.|| +++|+|++|...+... ++. ..+++||.+
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~~-----~~v~~gd~~ 85 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GEE-----VEVKAGDSV 85 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CEE-----EEecCCCEE
Confidence 44566677777 9999999999999864 332 568888865
No 60
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=45.22 E-value=15 Score=31.20 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 43 KFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 43 s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
........++|+.+.+++. +.++..|.+...+++.++..++++++.+..-|++.+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s 94 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTS 94 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888877776 446688889999999999999999999999999888
No 61
>PF15157 IQ-like: IQ-like
Probab=43.12 E-value=17 Score=29.17 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHH
Q 045637 292 PACFIQAAWRHCKKRK 307 (392)
Q Consensus 292 ~~~~iq~~w~~~~~r~ 307 (392)
....||+|||+|-.|+
T Consensus 49 kvkiiqrawre~lq~q 64 (97)
T PF15157_consen 49 KVKIIQRAWREYLQRQ 64 (97)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3457999999997665
No 62
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=42.14 E-value=48 Score=30.34 Aligned_cols=58 Identities=10% Similarity=0.265 Sum_probs=38.2
Q ss_pred CCCEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHH
Q 045637 186 LRAQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAE 260 (392)
Q Consensus 186 ~G~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~e 260 (392)
++++++++++|.+.+...++|+. ....|++||+|= +|..+ ..+-++..+|..+++.+.
T Consensus 53 ~tdE~FyqleG~~~l~v~d~g~~---~~v~L~eGd~fl--------lP~gv------pHsP~r~~~tv~LviE~~ 110 (177)
T PRK13264 53 PGEEFFYQLEGDMYLKVQEDGKR---RDVPIREGEMFL--------LPPHV------PHSPQREAGSIGLVIERK 110 (177)
T ss_pred CCceEEEEECCeEEEEEEcCCce---eeEEECCCCEEE--------eCCCC------CcCCccCCCeEEEEEEeC
Confidence 34999999999999987666542 236799999873 22221 122233567777777654
No 63
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=39.73 E-value=57 Score=21.91 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 045637 80 LISILNLVLLAHLI 93 (392)
Q Consensus 80 ~i~i~G~~lfa~lI 93 (392)
++.++|+++-+|++
T Consensus 23 lifvl~vLFssyff 36 (37)
T PF02419_consen 23 LIFVLAVLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhc
Confidence 44555666666654
No 64
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=39.67 E-value=28 Score=25.99 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=16.1
Q ss_pred HHHHHhCChhhHHHHHHHH
Q 045637 135 ESILHALPTDLRRDIQRHL 153 (392)
Q Consensus 135 e~ll~~LP~~Lr~dI~~~l 153 (392)
-+|++.||.+|++++...+
T Consensus 5 yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 5 YELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHCcHHHHHHHHHHH
Confidence 3689999999999988665
No 65
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=38.82 E-value=1.2e+02 Score=32.37 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=58.7
Q ss_pred HHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc-----ccccCccccCCCChhHHHHHHhHhHhHh
Q 045637 52 LWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY-----RPICNPLLHRQIPQNLRELVRQFVPYKW 126 (392)
Q Consensus 52 lYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~-----~~i~~~M~~r~lp~~Lr~RVr~y~~y~w 126 (392)
+--.+..+.++|||-+.|+ .+..+.-++.+.+.+++++-+.|-+.. +....+|----||- -+...+=+.|
T Consensus 283 lsr~LlLIVSlGYGIVkP~-Lg~~l~rv~~ig~~~~i~s~i~~l~~~~g~~se~~~~~~lf~~ip~----ai~d~~f~~w 357 (518)
T KOG2568|consen 283 LSRLLLLIVSLGYGIVKPT-LGGTLLRVCQIGVIYFIASEILGLARVIGNISELSSLLILFAALPL----AILDAAFIYW 357 (518)
T ss_pred HHHHHHHHHhcCcceEecC-cchHHHHHHHHhHHHHHHHHHHHHHHHhcCcccccchhhHHHHHHH----HHHHHHHHHH
Confidence 3345667788999999998 888888888888888888887777766 22222222223333 3445555666
Q ss_pred hccCCCCHHHHHHhCChhhH------HHHHHHHHHHHh
Q 045637 127 LATRGVDEESILHALPTDLR------RDIQRHLCLDLV 158 (392)
Q Consensus 127 ~~~~g~dee~ll~~LP~~Lr------~dI~~~l~~~lL 158 (392)
|+..|+..+| ..++..+|+++.
T Consensus 358 ----------IF~SL~~Tlk~Lr~rRn~vKl~lYr~F~ 385 (518)
T KOG2568|consen 358 ----------IFISLAKTLKKLRLRRNIVKLSLYRKFT 385 (518)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666554 346677777653
No 66
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=38.47 E-value=47 Score=36.89 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=35.2
Q ss_pred HHhCChhhHHHHHHHHHHHHhc-----ccccCCCCChhhHHHHhhhc
Q 045637 138 LHALPTDLRRDIQRHLCLDLVR-----RVPFFSQMDDQLPDALCERL 179 (392)
Q Consensus 138 l~~LP~~Lr~dI~~~l~~~lL~-----~vplF~~l~~~~L~~L~~~l 179 (392)
.+.||++||..|..+.+.+... .-.+++++|+.+...|+.++
T Consensus 370 ~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL 416 (727)
T KOG0498|consen 370 RRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL 416 (727)
T ss_pred hccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence 4689999999999999886644 44688999999999988777
No 67
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=35.78 E-value=93 Score=26.11 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=31.0
Q ss_pred cEEEEecCC-----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeech
Q 045637 179 LVSSLSTLR-----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 179 lk~~~y~~G-----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~ 225 (392)
+....+.|| +...+|++|++++... +.. ..+++||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~------~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEK------KELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCc------eEecCCCEEEEC
Confidence 345566676 6899999999999975 332 579999998766
No 68
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=35.74 E-value=31 Score=36.90 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=15.2
Q ss_pred cchhhhHHHHHHHHHHH
Q 045637 288 WRTWPACFIQAAWRHCK 304 (392)
Q Consensus 288 ~r~~~~~~iq~~w~~~~ 304 (392)
.|.-||..||.+||.|-
T Consensus 338 rr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYA 354 (654)
T ss_pred hcchHHHHHHHHHHHHh
Confidence 57889999999999985
No 69
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=34.78 E-value=46 Score=22.48 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=7.1
Q ss_pred HHHHHHHHHh
Q 045637 50 YCLWWGLQNL 59 (392)
Q Consensus 50 ~slYWal~tl 59 (392)
.|+|||+..+
T Consensus 17 TSLy~GlLli 26 (39)
T PRK00753 17 TSLYLGLLLV 26 (39)
T ss_pred hhHHHHHHHH
Confidence 5888987643
No 70
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=33.99 E-value=52 Score=28.38 Aligned_cols=36 Identities=8% Similarity=0.200 Sum_probs=23.5
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHhhcc-------ccccCcccc
Q 045637 72 IGETLLAV-LISILNLVLLAHLIGNMQY-------RPICNPLLH 107 (392)
Q Consensus 72 ~~E~if~i-~i~i~G~~lfa~lIG~i~~-------~~i~~~M~~ 107 (392)
..|+++.. ++.++|++++|.++|+|-+ +-...|+..
T Consensus 41 ~~~~lYIL~vmgfFgff~~gImlsyvRSKK~E~s~DPyh~YIe~ 84 (129)
T PF02060_consen 41 DNEYLYILVVMGFFGFFTVGIMLSYVRSKKREHSHDPYHQYIEE 84 (129)
T ss_dssp SSTT-HHHHHHHHHHHHHHHHHHHHHHHHHH-----TTTTTS-T
T ss_pred CceeehHHHHHHHHHHHHHHHHHHHHHHhhhccccChHHHHhHH
Confidence 34555554 4557899999999999998 445556543
No 71
>COG3109 ProQ Activator of osmoprotectant transporter ProP [Signal transduction mechanisms]
Probab=33.66 E-value=25 Score=32.02 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=25.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhcccchhhhH
Q 045637 261 DLKFVANQFRRLHSKKLQHTFCFYSHHWRTWPAC 294 (392)
Q Consensus 261 df~~ll~~fP~l~~~~lq~~~r~~s~~~r~~~~~ 294 (392)
|+.+-++..+.+...+|+.++|-|.+.||-|.-|
T Consensus 41 Dl~e~lq~d~~vSktQLrqAlr~yts~wRYl~g~ 74 (208)
T COG3109 41 DLAERLQDDENVSKTQLRQALRLYTSSWRYLYGV 74 (208)
T ss_pred HHHHHHhccccccHHHHHHHHHHHhcccceeeec
Confidence 4444444555677889999999999999988543
No 72
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=33.33 E-value=30 Score=38.18 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=17.7
Q ss_pred ccchhhhHHHHHHHHHHHHHHhHHhhcc
Q 045637 287 HWRTWPACFIQAAWRHCKKRKMAKNLGM 314 (392)
Q Consensus 287 ~~r~~~~~~iq~~w~~~~~r~~~~~~~~ 314 (392)
.|.+. |.-||.||||+-.||--+.+|.
T Consensus 694 ~~d~~-A~~IQkAWRrfv~rrky~k~re 720 (1106)
T KOG0162|consen 694 KWDGM-ARRIQKAWRRFVARRKYEKMRE 720 (1106)
T ss_pred HhhHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 5679999999976654444444
No 73
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=30.78 E-value=92 Score=24.89 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=20.5
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.-.++|++|.|++.-.+ . .-.+++|+.|=
T Consensus 34 ~~vF~V~~G~v~Vti~~--~-----~f~v~~G~~F~ 62 (85)
T PF11699_consen 34 TMVFYVIKGKVEVTIHE--T-----SFVVTKGGSFQ 62 (85)
T ss_dssp EEEEEEEESEEEEEETT--E-----EEEEETT-EEE
T ss_pred EEEEEEEeCEEEEEEcC--c-----EEEEeCCCEEE
Confidence 56788999999998743 1 14588888773
No 74
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=30.63 E-value=1.9e+02 Score=25.86 Aligned_cols=49 Identities=31% Similarity=0.470 Sum_probs=32.3
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEE
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVL 257 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L 257 (392)
++|.+|++|++.+.. + |++ ...++||++= +|+ .++.+..+-..+.++..
T Consensus 96 DEi~~VlEG~L~i~~-~-G~~-----~~A~~GDvi~--------iPk------Gs~I~fst~~~a~~~Yv 144 (152)
T PF06249_consen 96 DEIKYVLEGTLEISI-D-GQT-----VTAKPGDVIF--------IPK------GSTITFSTPDYARFFYV 144 (152)
T ss_dssp EEEEEEEEEEEEEEE-T-TEE-----EEEETT-EEE--------E-T------T-EEEEEEEEEEEEEEE
T ss_pred ceEEEEEEeEEEEEE-C-CEE-----EEEcCCcEEE--------ECC------CCEEEEecCCCEEEEEE
Confidence 999999999999984 3 443 5689998763 222 34566666666776654
No 75
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=30.39 E-value=4.3e+02 Score=24.26 Aligned_cols=115 Identities=11% Similarity=0.065 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-------------------ccccCccccCCCChhHHHHHHhHhHhHhhcc--CCC
Q 045637 74 ETLLAVLISILNLVLLAHLIGNMQY-------------------RPICNPLLHRQIPQNLRELVRQFVPYKWLAT--RGV 132 (392)
Q Consensus 74 E~if~i~i~i~G~~lfa~lIG~i~~-------------------~~i~~~M~~r~lp~~Lr~RVr~y~~y~w~~~--~g~ 132 (392)
-++.++.+..+|.+++..+++|+.- -+=.-|......+++.-+.+-+|+-+.-..- ..+
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~~~v~l~~~~~~~~~~q~~vlvPp~~~~~~~vs~~~ad~~YLe~ma~~~~~L~lNvTP~nV 89 (188)
T PRK13726 10 SRVMAIAFIFLSVLIVLSLSVNVIQGVNNYRLQNEQRTAVTPMAFNAPFAVSQNSADASYLQQMALSFIALRLNVSPETV 89 (188)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEECCcCCccEEEECCcCCHHHHHHHHHHHHHHhcCCChhhH
Confidence 3455555555556666666665544 1334567788899999999999987765432 334
Q ss_pred C--HHHHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC-----CEEEEEEeceEEEEe
Q 045637 133 D--EESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR-----AQMLFIISGRLESST 202 (392)
Q Consensus 133 d--ee~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G-----~~myfI~~G~V~v~~ 202 (392)
| .+.|+.-++++.+.+++..+..+.- ...-..+....++.. +...+.++|.++-..
T Consensus 90 d~~~~~LL~~v~p~~~~~lk~~L~~~a~--------------~Ik~~~vSs~F~~~~i~v~~~~~~V~V~Gtlkt~v 152 (188)
T PRK13726 90 DASHQALLQYIRPGAQNQMKVILAEEAK--------------RIKNDNVNSAFYQTSVRVWPQYGRVDIRGVLKTWI 152 (188)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHH--------------HHHhcCceEEEEeeeEEEccCCCEEEEEEEEEEEE
Confidence 4 5789999999999999888754321 111233333333333 677888888887764
No 76
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=29.83 E-value=1.3e+02 Score=27.00 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=22.9
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|++.+.. + ++. ..|++||.+=
T Consensus 129 ~E~~~Vl~G~~~~~~-~-~~~-----~~l~~Gd~~~ 157 (185)
T PRK09943 129 EEIGTVLEGEIVLTI-N-GQD-----YHLVAGQSYA 157 (185)
T ss_pred cEEEEEEEeEEEEEE-C-CEE-----EEecCCCEEE
Confidence 899999999999876 2 232 5799999763
No 77
>PRK13481 glycosyltransferase; Provisional
Probab=28.27 E-value=1.1e+02 Score=29.18 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-------ccccCccccCCCChhHHHHHHhHhHhHhhccCCCCHHHHHHhC
Q 045637 75 TLLAVLISILNLVLLAHLIGNMQY-------RPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHAL 141 (392)
Q Consensus 75 ~if~i~i~i~G~~lfa~lIG~i~~-------~~i~~~M~~r~lp~~Lr~RVr~y~~y~w~~~~g~dee~ll~~L 141 (392)
+++.+++++.=++.|+|....-.. ..=..|+.-.++|+.+++-+..-.+-.+-.+.|+|...+.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ip~~l~~AviA~ED~rFy~H~GvD~~~i~rA~ 84 (232)
T PRK13481 11 ILLTILIIIALFIGIMYFLSTRDNVDELRKIENKSSFVSADNMPEYVKGAFISMEDERFYKHHGFDLKGTTRAL 84 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcCccccHHHcCHHHHHHHHHHhcCccccCCCCCHHHHHHHH
Confidence 445555555444444444433333 3345678888999999999999888887788999976665543
No 78
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=27.84 E-value=1.4e+02 Score=30.29 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=22.9
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~F 222 (392)
+++++|++|++++...++...+ ....+++||++
T Consensus 267 ~E~~yvl~G~~~~~v~d~~g~~--~~~~l~~GD~~ 299 (367)
T TIGR03404 267 DEWQYFIQGQARMTVFAAGGNA--RTFDYQAGDVG 299 (367)
T ss_pred CeEEEEEEEEEEEEEEecCCcE--EEEEECCCCEE
Confidence 8999999999998753321111 12569999965
No 79
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=27.59 E-value=2e+02 Score=24.63 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=24.9
Q ss_pred CEEEEEEeceEEEEecCC-CceeeeeeEEeCCCCeeec
Q 045637 188 AQMLFIISGRLESSTTNG-GRTGFFNSITLRPGDFCGE 224 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~g-g~~~~~~~~~L~~Gd~FGE 224 (392)
.++++|++|+..+...+. +.. .....+++||.+=-
T Consensus 52 ~e~~~Vl~G~~~~~~~~~~~~~--~~~~~l~~GD~~~i 87 (146)
T smart00835 52 TELLYVVRGEGRVGVVDPNGNK--VYDARLREGDVFVV 87 (146)
T ss_pred CEEEEEEeCeEEEEEEeCCCCe--EEEEEecCCCEEEE
Confidence 789999999999976432 222 12367999997743
No 80
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=26.78 E-value=1.5e+02 Score=25.47 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=23.6
Q ss_pred CEEEEEEeceEEEEe--cCCC----ceeeeeeEEeCCCCeeech
Q 045637 188 AQMLFIISGRLESST--TNGG----RTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 188 ~~myfI~~G~V~v~~--~~gg----~~~~~~~~~L~~Gd~FGE~ 225 (392)
.++++|++|+..+.. .++. +.....+ .+++||+|=-.
T Consensus 55 ~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v-~l~~Gdv~~vP 97 (144)
T PF00190_consen 55 DEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKV-RLKAGDVFVVP 97 (144)
T ss_dssp EEEEEEEESEEEEEEEETTCSSSEEEEEEEEE-EEETTEEEEE-
T ss_pred eEEeeeeccceEEEEEecCCccccceeeecee-eeecccceeec
Confidence 899999999998643 2221 1111122 49999998644
No 81
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=26.46 E-value=1.4e+02 Score=30.27 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHHHHhccCcCCcc--ccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 43 KFLEKYFYCLWWGLQNLSSYAQSLA--ISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 43 s~~~kY~~slYWal~tlsTvGygd~--~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
...--|+-+|-|++..+.+++.++. .|. .. ..+++++.++++++|-|.|..+..
T Consensus 96 ~vLg~Figtfvy~l~~l~~i~~~~~~~~p~-~~-~~~a~~l~i~~v~~li~fI~~i~~ 151 (371)
T PF10011_consen 96 VVLGTFIGTFVYSLLVLIAIRSGDYGSVPR-LS-VFIALALAILSVVLLIYFIHHIAR 151 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccCcc-hH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788888899999888887765 444 33 888999999999999999998877
No 82
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=26.01 E-value=2e+02 Score=22.56 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=30.2
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEE
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFV 256 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~ 256 (392)
.+..||++|.+..- + ..+.+||+.=+. +.+..+..+.+.|.+++
T Consensus 45 ~ee~~VLeG~~~d~---~--------~~~~~G~~~~~p--------------~g~~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 45 GEEILVLEGELSDG---D--------GRYGAGDWLRLP--------------PGSSHTPRSDEGCLILV 88 (91)
T ss_dssp -EEEEEEECEEEET---T--------CEEETTEEEEE---------------TTEEEEEEESSCEEEEE
T ss_pred cEEEEEEEEEEEEC---C--------ccCCCCeEEEeC--------------CCCccccCcCCCEEEEE
Confidence 68889999998742 2 236888887555 24567777888888875
No 83
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=25.78 E-value=1e+02 Score=29.70 Aligned_cols=29 Identities=34% Similarity=0.639 Sum_probs=22.9
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++.+|++|++.+.. ++.+ ..|++||++=
T Consensus 81 ee~iyVl~G~l~v~~--~g~~-----~~L~~Gd~~y 109 (260)
T TIGR03214 81 ETFLFVISGEVNVTA--EGET-----HELREGGYAY 109 (260)
T ss_pred EEEEEEEeCEEEEEE--CCEE-----EEECCCCEEE
Confidence 689999999999984 2332 5799999874
No 84
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.74 E-value=78 Score=31.51 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=26.1
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeech
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~ 225 (392)
+.+.||++|+=.-+..+|.+ ..+.+|||+=--
T Consensus 113 sAlRFvveG~Ga~T~VdGer------~~M~~GDfilTP 144 (351)
T COG3435 113 SALRFVVEGKGAYTVVDGER------TPMEAGDFILTP 144 (351)
T ss_pred cceEEEEeccceeEeecCce------eeccCCCEEEcc
Confidence 89999999998777777776 468999997433
No 85
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=25.18 E-value=1.1e+02 Score=20.48 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 045637 75 TLLAVLISILNLVLLAHLIGN 95 (392)
Q Consensus 75 ~if~i~i~i~G~~lfa~lIG~ 95 (392)
.++++++.++++++|+++-+.
T Consensus 7 ~Vy~vV~ffv~LFifGflsnD 27 (36)
T PF02532_consen 7 FVYTVVIFFVSLFIFGFLSND 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred eehhhHHHHHHHHhccccCCC
Confidence 467788888899999887543
No 86
>PRK11171 hypothetical protein; Provisional
Probab=24.93 E-value=1.7e+02 Score=28.24 Aligned_cols=29 Identities=24% Similarity=0.550 Sum_probs=22.9
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++++|++|++++.. ++++ ..|.+||++=
T Consensus 84 eE~~~VlsG~l~v~~--~g~~-----~~L~~GDsi~ 112 (266)
T PRK11171 84 ETFLFVVEGEITLTL--EGKT-----HALSEGGYAY 112 (266)
T ss_pred eEEEEEEeCEEEEEE--CCEE-----EEECCCCEEE
Confidence 789999999999985 2332 6799999763
No 87
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=23.73 E-value=1.2e+02 Score=28.89 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=23.2
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~F 222 (392)
+++.+|++|.+.+.. +|++ ..+++||++
T Consensus 176 dEi~YVLEGe~~l~I--dG~t-----~~l~pGDvl 203 (233)
T PRK15457 176 DEIDMVLEGELHVRH--EGET-----MIAKAGDVM 203 (233)
T ss_pred eEEEEEEEeEEEEEE--CCEE-----EEeCCCcEE
Confidence 999999999999987 3443 679999975
No 88
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=22.86 E-value=80 Score=27.47 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-----ccccCccccCCCChhHHHHHHhHhHhHhhccCCCCHHHHHHhCCh
Q 045637 77 LAVLISILNLVLLAHLIGNMQY-----RPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPT 143 (392)
Q Consensus 77 f~i~i~i~G~~lfa~lIG~i~~-----~~i~~~M~~r~lp~~Lr~RVr~y~~y~w~~~~g~dee~ll~~LP~ 143 (392)
++++..++|...++.-+---.+ ..++.|-.++-|=+-|+..-.+++--.|.+++ -.|.+|+++.|.
T Consensus 36 ~t~~aa~~gatayG~~~~~~~~kk~rr~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~-eeEaeiMKdVPg 106 (146)
T KOG3300|consen 36 MTMFAAVSGATAYGMYQVGQGNKKRRRLKIEDYAARNAILPILQAERDRRFLSELRKNL-EEEAEIMKDVPG 106 (146)
T ss_pred chhhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH-HHHHHHHccCCC
Confidence 4556666666555543322222 56666666666666666655555555554322 136678888885
No 89
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=22.63 E-value=2.1e+02 Score=29.08 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=24.6
Q ss_pred CEEEEEEeceEEEEecCC-CceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNG-GRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~g-g~~~~~~~~~L~~Gd~FG 223 (392)
.++.+|++|++.+...+. ++. + ...|++||+|=
T Consensus 88 ~E~~yVl~G~~~v~~~d~~g~~-~--~~~L~~GD~~~ 121 (367)
T TIGR03404 88 AEWAYVLYGSCRITAVDENGRN-Y--IDDVGAGDLWY 121 (367)
T ss_pred ceEEEEEeeEEEEEEEcCCCcE-E--EeEECCCCEEE
Confidence 899999999999886542 332 1 24699999873
No 90
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=22.38 E-value=1.1e+02 Score=24.57 Aligned_cols=28 Identities=25% Similarity=0.643 Sum_probs=18.8
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~F 222 (392)
-++.+|.+|...+.. ++ +. ..++||++|
T Consensus 24 ~~i~~v~~G~~~~~~-~~-~~-----~~l~~g~~~ 51 (136)
T PF02311_consen 24 YEIIYVLSGEGTLHI-DG-QE-----YPLKPGDLF 51 (136)
T ss_dssp EEEEEEEEE-EEEEE-TT-EE-----EEE-TT-EE
T ss_pred EEEEEEeCCEEEEEE-CC-EE-----EEEECCEEE
Confidence 578999999999865 33 22 579999987
No 91
>smart00751 BSD domain in transcription factors and synapse-associated proteins.
Probab=22.24 E-value=55 Score=23.25 Aligned_cols=25 Identities=20% Similarity=0.646 Sum_probs=19.7
Q ss_pred cchhhhhhcCccCcchHHHHHHHHH
Q 045637 29 GIFENTLTNNVVSSKFLEKYFYCLW 53 (392)
Q Consensus 29 gi~~~a~~~~i~~~s~~~kY~~slY 53 (392)
-+|...++..+....||.+|++..+
T Consensus 24 ~~~~~lVP~~~se~~FW~ryF~~~~ 48 (51)
T smart00751 24 KLYNELVPKVLSEEEFWARYFYLLY 48 (51)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 3566677777888899999999875
No 92
>PRK11171 hypothetical protein; Provisional
Probab=21.83 E-value=2e+02 Score=27.66 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=28.9
Q ss_pred hcEEEEecCC-----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 178 RLVSSLSTLR-----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 178 ~lk~~~y~~G-----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.+....+.|| .+.++|++|++.+.. +++. ..+.+||++=
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~~-----~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NNDW-----VEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCEE-----EEeCCCCEEE
Confidence 4445566777 799999999999975 3332 6799999764
No 93
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=21.61 E-value=1e+02 Score=23.91 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=26.9
Q ss_pred HHHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEE
Q 045637 135 ESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVS 181 (392)
Q Consensus 135 e~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~ 181 (392)
.++|..||+.+|.+|...+ --+..++++.+..|-..++.
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~ 68 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEE 68 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHH
Confidence 4678888888887765554 45677788888887766543
No 94
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=20.23 E-value=2e+02 Score=27.06 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=26.5
Q ss_pred EEEecCC-CE--EEEEEeceEEEEecCCCceeeeeeEEeCCCCee
Q 045637 181 SSLSTLR-AQ--MLFIISGRLESSTTNGGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 181 ~~~y~~G-~~--myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~F 222 (392)
..++.|+ ++ +|++++|+....-.+...+ ......++||.+
T Consensus 94 ~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~--~~v~~~~~Gd~i 136 (209)
T COG2140 94 ELHYHPNADEPEIYYVLKGEGRMLVQKPEGE--ARVIAVRAGDVI 136 (209)
T ss_pred ccccCCCCCcccEEEEEeccEEEEEEcCCCc--EEEEEecCCcEE
Confidence 3355555 55 9999999998775442222 234678888875
Done!