Query 045637
Match_columns 392
No_of_seqs 349 out of 2045
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ptm_A Hyperpolarization-activ 100.0 4.3E-29 1.5E-33 226.3 18.2 169 99-282 15-193 (198)
2 3ukn_A Novel protein similar t 100.0 1.5E-29 5.2E-34 231.6 13.6 176 99-288 19-204 (212)
3 3bpz_A Potassium/sodium hyperp 100.0 7.9E-29 2.7E-33 225.4 16.2 167 99-281 16-192 (202)
4 3beh_A MLL3241 protein; transm 99.9 8.7E-25 3E-29 216.3 5.6 182 42-282 156-347 (355)
5 4f8a_A Potassium voltage-gated 99.8 4.7E-18 1.6E-22 146.9 15.3 135 134-281 5-149 (160)
6 3ocp_A PRKG1 protein; serine/t 99.7 8.2E-16 2.8E-20 130.4 12.2 121 140-275 7-137 (139)
7 3mdp_A Cyclic nucleotide-bindi 99.6 1.6E-15 5.6E-20 128.0 12.4 122 155-285 5-138 (142)
8 1wgp_A Probable cyclic nucleot 99.6 3.6E-16 1.2E-20 131.9 6.5 119 156-274 6-134 (137)
9 3gyd_A CNMP-BD protein, cyclic 99.6 6.5E-15 2.2E-19 132.1 14.3 140 134-284 13-167 (187)
10 2pqq_A Putative transcriptiona 99.6 1.8E-14 6.2E-19 122.3 14.6 117 155-282 4-131 (149)
11 3idb_B CAMP-dependent protein 99.6 1.3E-14 4.4E-19 126.2 12.0 121 144-275 26-156 (161)
12 1vp6_A CNBD, cyclic-nucleotide 99.6 4.4E-14 1.5E-18 118.9 13.2 112 154-282 9-130 (138)
13 2z69_A DNR protein; beta barre 99.5 5.9E-14 2E-18 119.9 13.8 118 155-282 11-139 (154)
14 4ev0_A Transcription regulator 99.5 1.5E-13 5.2E-18 124.3 16.6 114 158-282 1-125 (216)
15 3shr_A CGMP-dependent protein 99.5 1E-13 3.5E-18 132.3 15.3 131 137-282 20-160 (299)
16 3pna_A CAMP-dependent protein 99.5 1.7E-13 5.8E-18 118.3 12.5 110 151-275 33-152 (154)
17 3e97_A Transcriptional regulat 99.5 3.2E-13 1.1E-17 123.8 14.7 117 155-282 5-132 (231)
18 3d0s_A Transcriptional regulat 99.5 2.4E-13 8.1E-18 124.4 13.7 117 155-282 5-132 (227)
19 3fx3_A Cyclic nucleotide-bindi 99.5 1.9E-13 6.6E-18 125.8 12.6 118 154-282 9-137 (237)
20 2qcs_B CAMP-dependent protein 99.5 3.5E-13 1.2E-17 127.8 14.5 121 151-282 152-284 (291)
21 3dn7_A Cyclic nucleotide bindi 99.5 3.1E-13 1.1E-17 120.6 13.0 118 155-282 6-134 (194)
22 3dv8_A Transcriptional regulat 99.5 8.3E-13 2.8E-17 119.8 15.2 116 156-282 3-131 (220)
23 2d93_A RAP guanine nucleotide 99.5 4.2E-14 1.4E-18 119.2 5.4 114 142-270 2-127 (134)
24 3dkw_A DNR protein; CRP-FNR, H 99.5 3E-13 1E-17 123.3 11.4 118 155-282 8-136 (227)
25 4ava_A Lysine acetyltransferas 99.5 5.6E-13 1.9E-17 129.3 14.0 116 154-282 11-137 (333)
26 3shr_A CGMP-dependent protein 99.4 3.4E-13 1.1E-17 128.8 11.0 121 151-282 152-284 (299)
27 1zyb_A Transcription regulator 99.4 1.4E-12 4.6E-17 120.3 14.1 119 154-282 16-147 (232)
28 3of1_A CAMP-dependent protein 99.4 9.2E-13 3.2E-17 121.1 12.3 110 152-275 121-240 (246)
29 3iwz_A CAP-like, catabolite ac 99.4 3E-12 1E-16 116.8 15.1 118 155-282 10-143 (230)
30 4din_B CAMP-dependent protein 99.4 9.5E-13 3.2E-17 131.3 12.4 126 151-285 243-378 (381)
31 2gau_A Transcriptional regulat 99.4 2.1E-12 7.3E-17 118.3 13.4 114 158-282 12-136 (232)
32 3of1_A CAMP-dependent protein 99.4 1.8E-12 6E-17 119.2 12.6 113 154-281 5-127 (246)
33 2qcs_B CAMP-dependent protein 99.4 2.6E-12 8.8E-17 121.8 14.0 120 148-282 31-160 (291)
34 2fmy_A COOA, carbon monoxide o 99.4 2.7E-12 9.1E-17 116.9 12.1 109 156-282 4-122 (220)
35 4h33_A LMO2059 protein; bilaye 99.4 6.6E-13 2.3E-17 114.7 6.9 52 47-98 43-94 (137)
36 1o7f_A CAMP-dependent RAP1 gua 99.4 5.6E-12 1.9E-16 127.9 14.3 142 126-277 11-164 (469)
37 3tnp_B CAMP-dependent protein 99.3 4.6E-12 1.6E-16 128.0 13.0 120 146-276 135-264 (416)
38 1ft9_A Carbon monoxide oxidati 99.3 3E-12 1E-16 116.9 10.3 108 157-282 1-118 (222)
39 4din_B CAMP-dependent protein 99.3 1.1E-11 3.7E-16 123.6 13.3 118 150-282 124-251 (381)
40 3ryp_A Catabolite gene activat 99.3 3.3E-11 1.1E-15 108.4 14.3 111 162-282 2-123 (210)
41 3tnp_B CAMP-dependent protein 99.3 5.6E-12 1.9E-16 127.4 9.6 115 153-278 264-395 (416)
42 2oz6_A Virulence factor regula 99.3 7.7E-11 2.6E-15 105.7 14.9 106 167-282 1-120 (207)
43 3vou_A ION transport 2 domain 99.3 2.8E-12 9.6E-17 112.0 5.2 52 47-98 52-103 (148)
44 1o7f_A CAMP-dependent RAP1 gua 99.3 2E-11 6.8E-16 123.8 11.6 114 151-278 332-457 (469)
45 3kcc_A Catabolite gene activat 99.2 1.5E-10 5.2E-15 108.7 13.9 109 164-282 54-173 (260)
46 1o5l_A Transcriptional regulat 99.2 1.4E-10 4.8E-15 105.3 12.4 112 161-282 4-126 (213)
47 4f7z_A RAP guanine nucleotide 99.2 1.2E-10 4.2E-15 129.4 13.6 128 136-274 23-161 (999)
48 3e6c_C CPRK, cyclic nucleotide 99.1 3.7E-10 1.3E-14 104.9 12.5 111 158-282 11-132 (250)
49 3eff_K Voltage-gated potassium 99.1 9.5E-11 3.2E-15 101.0 5.7 56 43-98 36-91 (139)
50 2a9h_A Voltage-gated potassium 99.1 1.4E-10 4.9E-15 102.1 5.9 57 42-98 79-135 (155)
51 3cf6_E RAP guanine nucleotide 99.0 6.8E-10 2.3E-14 119.2 12.0 124 135-273 12-147 (694)
52 2ih3_C Voltage-gated potassium 99.0 1.7E-10 5.9E-15 97.5 5.5 56 43-98 57-112 (122)
53 4f7z_A RAP guanine nucleotide 99.0 1.2E-09 4.1E-14 121.5 13.7 104 152-269 333-448 (999)
54 3ldc_A Calcium-gated potassium 99.0 5.2E-10 1.8E-14 88.0 6.7 52 47-98 28-79 (82)
55 3ouf_A Potassium channel prote 99.0 5.8E-10 2E-14 90.5 6.1 52 47-98 32-83 (97)
56 3la7_A Global nitrogen regulat 99.0 5.2E-09 1.8E-13 96.9 13.0 104 169-282 30-148 (243)
57 2q67_A Potassium channel prote 99.0 8.8E-10 3E-14 92.1 6.8 52 47-98 49-100 (114)
58 2bgc_A PRFA; bacterial infecti 98.9 8.6E-09 2.9E-13 95.0 13.7 107 165-282 2-123 (238)
59 1orq_C Potassium channel; volt 98.9 9.1E-10 3.1E-14 101.6 5.5 56 43-98 161-216 (223)
60 2k1e_A Water soluble analogue 98.9 1.1E-10 3.9E-15 95.6 -1.1 55 44-98 37-91 (103)
61 3pjs_K KCSA, voltage-gated pot 98.8 5.2E-10 1.8E-14 99.4 -0.2 56 43-98 63-118 (166)
62 3um7_A Potassium channel subfa 98.7 1.8E-08 6.1E-13 97.9 6.5 52 47-98 115-166 (309)
63 2qks_A KIR3.1-prokaryotic KIR 98.6 3.7E-08 1.3E-12 96.4 6.7 52 47-98 78-129 (321)
64 3b02_A Transcriptional regulat 98.6 2.4E-07 8.1E-12 82.5 11.1 82 182-281 9-94 (195)
65 1p7b_A Integral membrane chann 98.6 3.5E-08 1.2E-12 97.0 4.9 53 46-98 95-147 (333)
66 1xl4_A Inward rectifier potass 98.6 5.8E-08 2E-12 94.2 6.4 54 45-98 80-133 (301)
67 3ukm_A Potassium channel subfa 98.5 2.8E-07 9.6E-12 88.3 8.1 52 47-98 93-144 (280)
68 2r9r_B Paddle chimera voltage 98.5 8.2E-08 2.8E-12 99.6 4.6 57 42-98 370-426 (514)
69 1lnq_A MTHK channels, potassiu 98.4 3.8E-08 1.3E-12 96.0 -0.8 52 47-98 45-96 (336)
70 3ukm_A Potassium channel subfa 98.4 2.9E-07 9.8E-12 88.2 5.2 52 47-98 201-259 (280)
71 4gx0_A TRKA domain protein; me 98.3 3.4E-07 1.2E-11 95.5 5.6 49 47-95 51-99 (565)
72 3um7_A Potassium channel subfa 98.3 4.7E-07 1.6E-11 88.0 4.4 52 47-98 224-281 (309)
73 2zcw_A TTHA1359, transcription 98.2 2.4E-06 8.3E-11 76.2 7.9 86 177-281 3-101 (202)
74 3sya_A G protein-activated inw 97.9 8.6E-06 2.9E-10 80.0 5.9 53 46-98 90-144 (340)
75 3spc_A Inward-rectifier K+ cha 97.9 1.8E-05 6.1E-10 77.8 6.7 54 45-98 92-147 (343)
76 3rvy_A ION transport protein; 97.0 0.00043 1.5E-08 65.7 4.5 57 42-98 175-237 (285)
77 2l53_B CAM, voltage-gated sodi 95.1 0.013 4.5E-07 37.0 2.5 19 290-308 6-24 (31)
78 2kxw_B Sodium channel protein 94.6 0.017 5.9E-07 35.3 2.0 18 290-307 6-23 (27)
79 4dck_A Sodium channel protein 75.4 1.4 4.8E-05 38.7 2.5 21 290-310 130-150 (168)
80 3es4_A Uncharacterized protein 69.6 4.1 0.00014 33.4 3.9 31 188-224 62-92 (116)
81 3bcw_A Uncharacterized protein 64.5 5.6 0.00019 32.6 3.8 32 188-225 69-100 (123)
82 1n2d_C IQ2 and IQ3 motifs from 63.2 4.2 0.00014 27.4 2.3 19 289-307 27-45 (48)
83 3fjs_A Uncharacterized protein 62.7 35 0.0012 26.8 8.2 48 188-256 57-104 (114)
84 3lwc_A Uncharacterized protein 62.2 11 0.00039 30.3 5.2 29 188-223 60-88 (119)
85 3h8u_A Uncharacterized conserv 59.4 12 0.0004 29.6 4.8 30 188-223 61-90 (125)
86 2i45_A Hypothetical protein; n 59.3 19 0.00065 27.6 5.9 55 188-262 49-103 (107)
87 1o5u_A Novel thermotoga mariti 58.7 42 0.0014 26.1 7.9 31 187-223 49-79 (101)
88 2pfw_A Cupin 2, conserved barr 57.5 47 0.0016 25.5 8.1 49 188-257 55-103 (116)
89 3d82_A Cupin 2, conserved barr 57.3 24 0.00084 26.3 6.2 51 188-259 51-101 (102)
90 1yhf_A Hypothetical protein SP 57.1 50 0.0017 25.2 8.2 49 188-257 61-109 (115)
91 4dxw_A Navrh, ION transport pr 56.4 12 0.00042 33.3 4.9 56 43-98 161-221 (229)
92 3kg2_A Glutamate receptor 2; I 55.6 8.1 0.00028 40.9 4.1 50 48-98 564-613 (823)
93 3es1_A Cupin 2, conserved barr 54.8 14 0.00049 32.1 4.9 38 179-222 81-128 (172)
94 1yfu_A 3-hydroxyanthranilate-3 53.9 15 0.00051 32.2 4.7 33 188-223 56-88 (174)
95 2ozj_A Cupin 2, conserved barr 52.7 75 0.0026 24.3 9.5 49 188-257 59-107 (114)
96 3dvk_B Voltage-dependent R-typ 51.3 8 0.00027 22.5 1.7 17 291-307 7-23 (23)
97 2vpv_A Protein MIF2, MIF2P; nu 51.3 18 0.00063 31.3 4.9 29 188-223 111-139 (166)
98 4b29_A Dimethylsulfoniopropion 51.3 19 0.00066 32.6 5.2 30 188-223 153-182 (217)
99 2ix7_C Myosin-5A; contractIle 51.1 10 0.00035 26.5 2.8 23 291-313 29-51 (58)
100 3rns_A Cupin 2 conserved barre 51.0 52 0.0018 29.2 8.2 49 188-257 58-106 (227)
101 2ix7_C Myosin-5A; contractIle 50.1 10 0.00034 26.5 2.6 24 290-313 5-28 (58)
102 2fqp_A Hypothetical protein BP 49.3 13 0.00044 28.3 3.3 32 189-225 41-72 (97)
103 1v70_A Probable antibiotics sy 48.2 23 0.00078 26.3 4.6 29 188-223 50-78 (105)
104 2pyt_A Ethanolamine utilizatio 47.6 48 0.0017 27.1 6.9 31 188-225 76-106 (133)
105 3bu7_A Gentisate 1,2-dioxygena 45.9 21 0.0007 35.3 4.9 38 180-223 126-173 (394)
106 3myx_A Uncharacterized protein 45.2 22 0.00075 32.7 4.7 30 188-223 187-216 (238)
107 4e2g_A Cupin 2 conserved barre 45.1 28 0.00097 27.3 4.9 29 188-223 62-90 (126)
108 4axo_A EUTQ, ethanolamine util 44.8 56 0.0019 27.7 6.9 29 188-223 85-113 (151)
109 3ibm_A Cupin 2, conserved barr 43.6 46 0.0016 28.2 6.3 29 188-223 77-105 (167)
110 1n2d_C IQ2 and IQ3 motifs from 42.5 17 0.00058 24.2 2.7 22 292-313 5-26 (48)
111 2o8q_A Hypothetical protein; c 42.5 25 0.00086 28.0 4.3 30 188-223 65-94 (134)
112 2b8m_A Hypothetical protein MJ 41.8 42 0.0015 25.9 5.4 29 188-223 48-77 (117)
113 1lr5_A Auxin binding protein 1 41.1 45 0.0015 27.7 5.8 36 188-223 62-99 (163)
114 3d0j_A Uncharacterized protein 40.0 26 0.00089 29.6 3.9 58 188-260 51-110 (140)
115 2bnm_A Epoxidase; oxidoreducta 39.2 36 0.0012 29.1 5.1 33 188-223 141-173 (198)
116 1zvf_A 3-hydroxyanthranilate 3 39.2 33 0.0011 30.0 4.6 36 188-223 55-91 (176)
117 3lag_A Uncharacterized protein 39.1 12 0.00042 29.0 1.7 41 178-222 18-69 (98)
118 1sfn_A Conserved hypothetical 37.9 49 0.0017 29.9 5.9 43 176-225 164-217 (246)
119 3arc_L Photosystem II reaction 37.8 39 0.0013 21.6 3.5 9 50-58 15-23 (37)
120 3l2h_A Putative sugar phosphat 37.3 38 0.0013 28.1 4.7 28 188-222 69-96 (162)
121 1dgw_A Canavalin; duplicated s 36.9 43 0.0015 28.7 5.1 33 188-223 62-94 (178)
122 3jzv_A Uncharacterized protein 36.7 98 0.0033 26.2 7.3 29 188-223 74-102 (166)
123 2gu9_A Tetracenomycin polyketi 36.7 36 0.0012 25.7 4.2 29 188-223 45-73 (113)
124 2opk_A Hypothetical protein; p 36.6 28 0.00097 27.3 3.6 31 188-223 54-84 (112)
125 4i4a_A Similar to unknown prot 35.8 58 0.002 25.5 5.4 29 188-223 55-83 (128)
126 3kgz_A Cupin 2 conserved barre 35.6 46 0.0016 28.0 4.9 28 188-222 65-92 (156)
127 1fi2_A Oxalate oxidase, germin 35.5 64 0.0022 28.0 6.1 33 188-223 94-130 (201)
128 2q30_A Uncharacterized protein 35.4 90 0.0031 23.3 6.3 30 188-223 55-85 (110)
129 3ht1_A REMF protein; cupin fol 35.3 45 0.0015 26.6 4.8 31 188-223 60-90 (145)
130 3vmt_A Monofunctional glycosyl 35.3 77 0.0026 29.5 6.7 47 100-146 72-118 (263)
131 3myx_A Uncharacterized protein 35.2 28 0.00096 31.9 3.7 29 188-223 66-94 (238)
132 3i7d_A Sugar phosphate isomera 34.9 43 0.0015 28.2 4.7 29 188-223 66-94 (163)
133 1vj2_A Novel manganese-contain 33.5 43 0.0015 26.6 4.2 29 188-223 69-97 (126)
134 3bu7_A Gentisate 1,2-dioxygena 33.0 50 0.0017 32.5 5.4 39 180-225 297-345 (394)
135 2f4p_A Hypothetical protein TM 32.4 76 0.0026 26.0 5.8 30 188-223 69-98 (147)
136 4e2q_A Ureidoglycine aminohydr 32.1 92 0.0031 28.9 6.8 52 188-259 91-142 (266)
137 1o4t_A Putative oxalate decarb 31.1 46 0.0016 26.7 4.1 28 188-222 79-106 (133)
138 1y9q_A Transcriptional regulat 30.8 71 0.0024 27.1 5.5 29 188-223 127-155 (192)
139 3nw4_A Gentisate 1,2-dioxygena 30.7 38 0.0013 33.1 4.0 38 180-223 106-153 (368)
140 2d40_A Z3393, putative gentisa 30.0 39 0.0013 32.5 4.0 30 188-223 121-150 (354)
141 3bxl_B CAM, voltage-dependent 29.8 38 0.0013 20.2 2.3 19 291-309 3-21 (26)
142 1sq4_A GLXB, glyoxylate-induce 29.5 65 0.0022 29.8 5.3 40 177-223 191-241 (278)
143 2oa2_A BH2720 protein; 1017534 28.6 70 0.0024 26.1 4.9 34 188-222 65-98 (148)
144 1rc6_A Hypothetical protein YL 28.0 73 0.0025 28.8 5.3 29 188-223 201-229 (261)
145 3h7j_A Bacilysin biosynthesis 27.7 65 0.0022 28.9 4.8 37 179-222 36-82 (243)
146 3g43_E Voltage-dependent L-typ 27.7 23 0.00077 27.1 1.4 17 291-307 64-80 (81)
147 3ksc_A LEGA class, prolegumin; 27.5 1.2E+02 0.004 30.9 7.1 50 171-222 352-413 (496)
148 3arc_I Photosystem II reaction 27.3 60 0.002 21.0 3.1 21 75-95 7-27 (38)
149 3dve_B Voltage-dependent N-typ 27.0 9.1 0.00031 22.3 -0.7 17 291-307 6-22 (23)
150 2ea7_A 7S globulin-1; beta bar 26.4 74 0.0025 31.6 5.4 44 177-223 61-114 (434)
151 2e9q_A 11S globulin subunit be 26.4 1.2E+02 0.0041 30.4 6.9 51 171-223 316-378 (459)
152 1uij_A Beta subunit of beta co 26.2 77 0.0026 31.3 5.4 44 177-223 49-102 (416)
153 2d5f_A Glycinin A3B4 subunit; 25.9 1.2E+02 0.0042 30.6 6.9 51 171-223 361-423 (493)
154 2f3y_B Voltage-dependent L-typ 25.5 50 0.0017 19.6 2.3 20 292-311 4-23 (26)
155 3c3v_A Arachin ARAH3 isoform; 25.1 1.3E+02 0.0046 30.5 7.1 50 171-222 366-427 (510)
156 3kgl_A Cruciferin; 11S SEED gl 25.1 1.2E+02 0.0041 30.5 6.6 51 171-223 317-379 (466)
157 1rc6_A Hypothetical protein YL 25.0 53 0.0018 29.8 3.7 31 188-225 82-112 (261)
158 2qnk_A 3-hydroxyanthranilate 3 24.9 71 0.0024 30.1 4.6 33 188-223 52-84 (286)
159 3pjz_A Potassium uptake protei 24.2 1.3E+02 0.0045 30.4 6.8 81 43-123 302-404 (494)
160 1x82_A Glucose-6-phosphate iso 23.9 1.1E+02 0.0036 26.4 5.4 33 188-222 97-129 (190)
161 2o1q_A Putative acetyl/propion 23.6 1.4E+02 0.0048 24.5 5.9 42 179-225 46-97 (145)
162 3fz3_A Prunin; TREE NUT allerg 23.5 1.5E+02 0.005 30.5 6.9 50 171-222 388-449 (531)
163 3qac_A 11S globulin SEED stora 23.5 1.5E+02 0.005 29.9 6.9 51 171-223 317-379 (465)
164 1sfn_A Conserved hypothetical 22.9 1.9E+02 0.0063 25.9 7.0 30 188-224 69-98 (246)
165 3cew_A Uncharacterized cupin p 22.5 69 0.0023 25.0 3.5 29 188-223 49-77 (125)
166 2cav_A Protein (canavalin); vi 22.2 88 0.003 31.2 5.0 33 188-223 107-139 (445)
167 1sef_A Conserved hypothetical 21.5 63 0.0022 29.6 3.5 30 188-224 85-114 (274)
168 1sq4_A GLXB, glyoxylate-induce 21.5 69 0.0024 29.6 3.8 29 188-223 91-119 (278)
169 3rns_A Cupin 2 conserved barre 21.4 2.2E+02 0.0074 25.0 7.1 49 188-257 174-223 (227)
170 1fxz_A Glycinin G1; proglycini 21.3 1.5E+02 0.0053 29.7 6.6 33 188-222 360-393 (476)
171 2be6_D Voltage-dependent L-typ 20.7 76 0.0026 20.4 2.6 19 292-310 13-31 (37)
No 1
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.96 E-value=4.3e-29 Score=226.26 Aligned_cols=169 Identities=22% Similarity=0.387 Sum_probs=154.7
Q ss_pred ccccCccccCCCChhHHHHHHhHhHhHhhccCCCCHHHHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhh
Q 045637 99 RPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCER 178 (392)
Q Consensus 99 ~~i~~~M~~r~lp~~Lr~RVr~y~~y~w~~~~g~dee~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~ 178 (392)
+.+++||++++||.+|+.||++||+|.|. +++.+++++++.||++||.+|..+++.++++++|+|++++++++..|+..
T Consensus 15 ~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~ 93 (198)
T 2ptm_A 15 KQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTL 93 (198)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHh
Confidence 67899999999999999999999999997 68899999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEE
Q 045637 179 LVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKA 248 (392)
Q Consensus 179 lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A 248 (392)
+++..|.|| +.||||.+|.|++...+|. .+..+++|++|||..+ +... +++++|+|
T Consensus 94 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~-----~~~~l~~G~~fGe~~~----~~~~-----~~~~~~~a 159 (198)
T 2ptm_A 94 LEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGV-----IATSLSDGSYFGEICL----LTRE-----RRVASVKC 159 (198)
T ss_dssp CEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSC-----EEEEECTTCEESCHHH----HHSS-----CCSSEEEE
T ss_pred ccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCe-----EEEEecCCCEechHHH----cCCC-----ccceEEEE
Confidence 999999999 8999999999999985543 3578999999999854 3443 78999999
Q ss_pred eeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 249 LIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 249 ~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
.++|+++.|++++|..+++++|++....++...+
T Consensus 160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~ 193 (198)
T 2ptm_A 160 ETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVR 193 (198)
T ss_dssp SSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred eeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 9999999999999999999999999877766544
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.96 E-value=1.5e-29 Score=231.62 Aligned_cols=176 Identities=19% Similarity=0.315 Sum_probs=157.2
Q ss_pred ccccCccccCCCChhHHHHHHhHhHhHhhccCCCCHHHHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhh
Q 045637 99 RPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCER 178 (392)
Q Consensus 99 ~~i~~~M~~r~lp~~Lr~RVr~y~~y~w~~~~g~dee~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~ 178 (392)
+.+++||++++||++||.||++||+|.|..+++.|++++++.||++||.+|..+++..++ ++|+|++++++++..|+..
T Consensus 19 ~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~~~f~~l~~~~l~~l~~~ 97 (212)
T 3ukn_A 19 KDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLI 97 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GSGGGTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hcHHhhcCCHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999998877 8999999999999999999
Q ss_pred cEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEE
Q 045637 179 LVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKA 248 (392)
Q Consensus 179 lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A 248 (392)
+++..|.|| +.||||.+|.|++.. +| ..+..+++|++|||..++ ... .++++++|+|
T Consensus 98 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-~~-----~~~~~l~~G~~fGe~~~~----~~~---~~~~~~~v~a 164 (212)
T 3ukn_A 98 IKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK-DN-----TVLAILGKGDLIGSDSLT----KEQ---VIKTNANVKA 164 (212)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEECCEEEES-SS-----CEEEEECTTCEEECSCCS----SSS---CCBBCSEEEE
T ss_pred hheEEeCCCCEEEECCCcccEEEEEEecEEEEEE-CC-----eEEEEecCCCCcCcHHhc----cCC---CCCcceEEEE
Confidence 999999999 899999999999996 22 235889999999999542 111 1178999999
Q ss_pred eeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhhhhhccc
Q 045637 249 LIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFCFYSHHW 288 (392)
Q Consensus 249 ~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r~~s~~~ 288 (392)
.++|+++.|++++|..+++++|++....++...+..+...
T Consensus 165 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~l 204 (212)
T 3ukn_A 165 LTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNL 204 (212)
T ss_dssp SSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEEC
T ss_pred cccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999988887776554433
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.96 E-value=7.9e-29 Score=225.42 Aligned_cols=167 Identities=21% Similarity=0.364 Sum_probs=151.7
Q ss_pred ccccCccccCCCChhHHHHHHhHhHhHhhccCCCCHHHHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhh
Q 045637 99 RPICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCER 178 (392)
Q Consensus 99 ~~i~~~M~~r~lp~~Lr~RVr~y~~y~w~~~~g~dee~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~ 178 (392)
+.+++||++++||.+|+.||++|++|.|. +++.+++++++.||+.||.+|..+++.++|+++|+|.+++++++..|+..
T Consensus 16 ~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~ 94 (202)
T 3bpz_A 16 KQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTK 94 (202)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCCHHHHHHHHHh
Confidence 67899999999999999999999999996 58899999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEE
Q 045637 179 LVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKA 248 (392)
Q Consensus 179 lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A 248 (392)
+++..|.|| +.||||.+|.|++...+| +. ..+++|++|||..+ +... +++++|+|
T Consensus 95 ~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g-~~-----~~l~~G~~fGe~~~----~~~~-----~~~~~v~a 159 (202)
T 3bpz_A 95 LKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN-KE-----MKLSDGSYFGEICL----LTRG-----RRTASVRA 159 (202)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTS-CC-----EEEETTCEECHHHH----HHCS-----BCSSEEEE
T ss_pred CCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCC-eE-----EEEcCCCEeccHHH----hcCC-----CcccEEEE
Confidence 999999999 899999999999987544 32 46899999999854 3443 78999999
Q ss_pred eeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHh
Q 045637 249 LIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTF 281 (392)
Q Consensus 249 ~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~ 281 (392)
.++|+++.|++++|..+++++|++....++...
T Consensus 160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~ 192 (202)
T 3bpz_A 160 DTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAI 192 (202)
T ss_dssp SSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHH
T ss_pred eeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
Confidence 999999999999999999999998876665544
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.90 E-value=8.7e-25 Score=216.34 Aligned_cols=182 Identities=19% Similarity=0.321 Sum_probs=56.7
Q ss_pred cchHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCccccCCCChhHHHHHHhH
Q 045637 42 SKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQYRPICNPLLHRQIPQNLRELVRQF 121 (392)
Q Consensus 42 ~s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~~~i~~~M~~r~lp~~Lr~RVr~y 121 (392)
.+.+..|..|+||++.||||+||||++|.+..+++++++++++|++++++++|.+.+.-.+ ++++ +++
T Consensus 156 ~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~----------~~~~--~~~ 223 (355)
T 3beh_A 156 PEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ----------EVRR--GDF 223 (355)
T ss_dssp HHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH--HHH
T ss_pred CcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH--Hhh
Confidence 3456689999999999999999999999999999999999999999999999999862111 1111 001
Q ss_pred hHhHhhccCCCCHHHHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEE
Q 045637 122 VPYKWLATRGVDEESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQML 191 (392)
Q Consensus 122 ~~y~w~~~~g~dee~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~my 191 (392)
+ -+.+.++++|+|++++++.++.++..++++.|.|| +++|
T Consensus 224 ----------------~--------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly 273 (355)
T 3beh_A 224 ----------------V--------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMF 273 (355)
T ss_dssp ----------------H--------------HHHC---------------------------------------------
T ss_pred ----------------c--------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEE
Confidence 0 03568999999999999999999999999999999 8899
Q ss_pred EEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHH
Q 045637 192 FIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRR 271 (392)
Q Consensus 192 fI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~ 271 (392)
||.+|.|++...+ . ..+++|++|||..+ +.+. +++.+++|.++|+++.|++++|.++++++|+
T Consensus 274 ~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~----l~~~-----~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~ 336 (355)
T 3beh_A 274 FVVEGSVSVATPN---P-----VELGPGAFFGEMAL----ISGE-----PRSATVSAATTVSLLSLHSADFQMLCSSSPE 336 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeeEEEEEECC---e-----eEECCCCEEeehHH----hCCC-----CcceEEEECccEEEEEEeHHHHHHHHHHCHH
Confidence 9999999998754 1 46999999999944 3333 7889999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 045637 272 LHSKKLQHTFC 282 (392)
Q Consensus 272 l~~~~lq~~~r 282 (392)
+....++...+
T Consensus 337 ~~~~l~~~l~~ 347 (355)
T 3beh_A 337 IAEIFRKTALE 347 (355)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 98776665443
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.77 E-value=4.7e-18 Score=146.88 Aligned_cols=135 Identities=23% Similarity=0.320 Sum_probs=110.4
Q ss_pred HHHHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEec
Q 045637 134 EESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTT 203 (392)
Q Consensus 134 ee~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~ 203 (392)
.+++++.||++||.++..+++.++++++|+|++++++.++.++..++.+.|.+| +.+|||.+|.|++...
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 456999999999999999999999999999999999999999999999999999 8999999999999873
Q ss_pred CCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHh
Q 045637 204 NGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTF 281 (392)
Q Consensus 204 ~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~ 281 (392)
+ ..+..+++|++|||..+ +.. ...+++++++|.++|+++.|++++|..+++++|++....++...
T Consensus 85 ~------~~~~~~~~G~~fG~~~~----~~~---~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~ 149 (160)
T 4f8a_A 85 D------EVVAILGKGDVFGDVFW----KEA---TLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLI 149 (160)
T ss_dssp T------EEEEEEETTCEEECCTT----TCS---SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHCC
T ss_pred C------EEEEEecCCCEeCcHHH----hcC---cccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 13578999999999954 222 01278899999999999999999999999999999987776543
No 6
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.65 E-value=8.2e-16 Score=130.37 Aligned_cols=121 Identities=16% Similarity=0.254 Sum_probs=103.2
Q ss_pred hCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCcee
Q 045637 140 ALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTG 209 (392)
Q Consensus 140 ~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~ 209 (392)
++|..+|.+...+...++|+++|+|++++++.++.|+..++.+.|.+| +.+|||.+|.|++.. +| .
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~g-~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-EG-V-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE-TT-E--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-CC-E--
Confidence 689999999999999999999999999999999999999999999999 899999999999965 33 2
Q ss_pred eeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHH
Q 045637 210 FFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSK 275 (392)
Q Consensus 210 ~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~ 275 (392)
.+..+++|++|||..+ +... +++++++|.++|+++.|++++|..+++++|.+..+
T Consensus 83 --~~~~~~~G~~fGe~~~----l~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 --KLCTMGPGKVFGELAI----LYNC-----TRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp --EEEEECTTCEESCHHH----HHCC-----CCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred --EEEEeCCCCEeccHHH----HCCC-----CcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 3578999999999954 3343 78999999999999999999999999999998754
No 7
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.64 E-value=1.6e-15 Score=128.00 Aligned_cols=122 Identities=14% Similarity=0.179 Sum_probs=100.8
Q ss_pred HHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceee-eeeEEeCCCCee
Q 045637 155 LDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGF-FNSITLRPGDFC 222 (392)
Q Consensus 155 ~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~-~~~~~L~~Gd~F 222 (392)
.++|+++|+|++++++.++.++..++.+.|.+| +.+|||.+|.|++...+ +|++.. ..+..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 357899999999999999999999999999999 89999999999998643 332211 015789999999
Q ss_pred echhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 045637 223 GEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFCFYS 285 (392)
Q Consensus 223 GE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r~~s 285 (392)
||..+ +.+. +++.+++|.++|+++.|++++|..++.++|.+....++...+..+
T Consensus 85 G~~~~----~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~ 138 (142)
T 3mdp_A 85 GVSSL----IKPY-----HYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVL 138 (142)
T ss_dssp CGGGS----STTC-----BCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred chHHH----cCCC-----CceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 99843 3333 788999999999999999999999999999999888887776444
No 8
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.62 E-value=3.6e-16 Score=131.92 Aligned_cols=119 Identities=65% Similarity=1.000 Sum_probs=97.4
Q ss_pred HHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeech
Q 045637 156 DLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 156 ~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~ 225 (392)
++|+++|+|+.++++.++.|+..++.+.|.+| +.+|||++|.|++....+|++..+.+..+++|++|||.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 46899999999999999999999999999998 89999999999977555555544333489999999999
Q ss_pred hhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHH
Q 045637 226 LLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHS 274 (392)
Q Consensus 226 ~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~ 274 (392)
.+++++........++++++|+|.++|+++.|++++|..+++++|++++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 7644443332112225689999999999999999999999999998764
No 9
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.61 E-value=6.5e-15 Score=132.14 Aligned_cols=140 Identities=16% Similarity=0.230 Sum_probs=115.1
Q ss_pred HHHHHHhCChhhH----HHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEE
Q 045637 134 EESILHALPTDLR----RDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLE 199 (392)
Q Consensus 134 ee~ll~~LP~~Lr----~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~ 199 (392)
+..+.+.++++|- .+.......++++++|+|++++++.++.|+..++.+.|.+| +.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 4555566666543 34445556789999999999999999999999999999999 899999999999
Q ss_pred EEecC-CCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHH
Q 045637 200 SSTTN-GGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQ 278 (392)
Q Consensus 200 v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq 278 (392)
+...+ +|++ ..+..+++|++|||..+ +... +++++|+|.++|+++.|++++|..++.++|++....++
T Consensus 93 v~~~~~~g~~--~~~~~~~~G~~fGe~~~----l~~~-----~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~ 161 (187)
T 3gyd_A 93 VIKDIPNKGI--QTIAKVGAGAIIGEMSM----IDGM-----PRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLI 161 (187)
T ss_dssp EEEEETTTEE--EEEEEEETTCEESHHHH----HHCC-----CCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEECCCCCe--EEEEEccCCCeeeeHHH----hCCC-----CeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHH
Confidence 98654 4443 24578999999999954 3443 78999999999999999999999999999999988886
Q ss_pred HHhhhh
Q 045637 279 HTFCFY 284 (392)
Q Consensus 279 ~~~r~~ 284 (392)
...+..
T Consensus 162 ~l~~~l 167 (187)
T 3gyd_A 162 RLLQLL 167 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655533
No 10
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.59 E-value=1.8e-14 Score=122.31 Aligned_cols=117 Identities=23% Similarity=0.298 Sum_probs=100.4
Q ss_pred HHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeee
Q 045637 155 LDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 155 ~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++++|+|.+++++.++.|+..++.+.|.+| +.+|||.+|.|++...+ +|+. ..+..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRE--NMLAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSE--EEEEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcE--EEEEEcCCcCEec
Confidence 568999999999999999999999999999999 89999999999998654 3443 3458899999999
Q ss_pred chhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 224 EELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 224 E~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
+..+ +.+. ++..+++|.++|+++.|++++|..++.++|++....++...+
T Consensus 82 ~~~~----~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 131 (149)
T 2pqq_A 82 ELSL----FDPG-----PRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVAR 131 (149)
T ss_dssp GGGG----TSCE-----ECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHH
T ss_pred hHHh----cCCC-----CcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 9843 3333 788999999999999999999999999999998777665443
No 11
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.57 E-value=1.3e-14 Score=126.16 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeee
Q 045637 144 DLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNS 213 (392)
Q Consensus 144 ~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~ 213 (392)
.-+.+.......++|+++|+|++++++.++.|+..++.+.|.+| +.+|||.+|.|++....+|+.. .+
T Consensus 26 ~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~--~~ 103 (161)
T 3idb_B 26 HPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGR--CV 103 (161)
T ss_dssp CCCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEE--EE
T ss_pred CCCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeE--EE
Confidence 34455556667889999999999999999999999999999999 8999999999999975455543 45
Q ss_pred EEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHH
Q 045637 214 ITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSK 275 (392)
Q Consensus 214 ~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~ 275 (392)
..+++|++|||..+ +... +++++|+|.++|+++.|++++|..+++++|.+..+
T Consensus 104 ~~~~~G~~fGe~~~----~~~~-----~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~ 156 (161)
T 3idb_B 104 GNYDNRGSFGELAL----MYNT-----PRAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 156 (161)
T ss_dssp EEEESCCEECGGGG----TCCC-----CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCC
T ss_pred EEcCCCCEechHHH----HcCC-----CcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHH
Confidence 78999999999944 3333 78999999999999999999999999999987643
No 12
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.55 E-value=4.4e-14 Score=118.94 Aligned_cols=112 Identities=22% Similarity=0.371 Sum_probs=98.8
Q ss_pred HHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 154 CLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 154 ~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
..++++++|+|.+++++.++.|+..++.+.|.+| +.+|||.+|.|++...+ . ..+++|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~------~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--P------VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--C------EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--c------ceECCCCEee
Confidence 3568999999999999999999999999999999 89999999999998654 1 4699999999
Q ss_pred chhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 224 EELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 224 E~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
+..+ +... +++.+++|.++|+++.|++++|..++.++|++....++...+
T Consensus 81 ~~~~----~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 130 (138)
T 1vp6_A 81 EMAL----ISGE-----PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130 (138)
T ss_dssp HHHH----HHCC-----CCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ehHh----ccCC-----CceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9944 3443 678999999999999999999999999999999887776654
No 13
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.55 E-value=5.9e-14 Score=119.95 Aligned_cols=118 Identities=12% Similarity=0.089 Sum_probs=99.1
Q ss_pred HHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeee
Q 045637 155 LDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 155 ~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++++|+|..++++.+..|+..++.+.|.+| +.+|||.+|.|++...+ +|++ ..+..+++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQE--KILEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-------CCEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCE--EEEEEccCCCeec
Confidence 467999999999999999999999999999999 89999999999999654 3333 2357899999999
Q ss_pred chhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 224 EELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 224 E~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
|..+ +... +++..+++|.++|+++.|++++|..++.++|++....++...+
T Consensus 89 ~~~~----~~~~----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 139 (154)
T 2z69_A 89 EAMM----FMDT----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 139 (154)
T ss_dssp GGGG----GSSC----SBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHhh----ccCC----CCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence 9954 3332 2389999999999999999999999999999999887766554
No 14
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.54 E-value=1.5e-13 Score=124.30 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=96.3
Q ss_pred hcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechh
Q 045637 158 VRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEEL 226 (392)
Q Consensus 158 L~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~ 226 (392)
|+++|+|++++++.++.++..++.+.|.+| +.+|||.+|.|+++..+ +|++ ..+..+++|++|||..
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQE--RTLALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCE--EEEEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCE--EEEEEecCCCEEeehh
Confidence 578999999999999999999999999999 89999999999999753 4443 2458899999999984
Q ss_pred hHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 227 LAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 227 L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
+ +... +++.+++|.++|+++.|++++|..++.++|++....++...+
T Consensus 79 ~----~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 125 (216)
T 4ev0_A 79 L----LDEG-----ERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLAR 125 (216)
T ss_dssp H----HHCC-----BCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred h----cCCC-----CcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 4 4443 688999999999999999999999999999998777665554
No 15
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.53 E-value=1e-13 Score=132.34 Aligned_cols=131 Identities=14% Similarity=0.224 Sum_probs=113.3
Q ss_pred HHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCC
Q 045637 137 ILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGG 206 (392)
Q Consensus 137 ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg 206 (392)
-..++|...|.+...++..++++++|+|++++++.++.|+..++...|.+| +.+|||++|.|++.. +|
T Consensus 20 ~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-~g- 97 (299)
T 3shr_A 20 SMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-EG- 97 (299)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE-TT-
T ss_pred ccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE-CC-
Confidence 355799999999999999999999999999999999999999999999999 899999999999965 33
Q ss_pred ceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 207 RTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 207 ~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
. .+..+++|++|||.++ +.+. ++++||+|.++|+++.|++++|..++..+|..........++
T Consensus 98 ~----~~~~~~~G~~fGe~~l----l~~~-----~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~ 160 (299)
T 3shr_A 98 V----KLCTMGPGKVFGELAI----LYNC-----TRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLK 160 (299)
T ss_dssp E----EEEEECTTCEESCSGG----GTTT-----BCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred E----EEEEeCCCCeeeHhHH----hcCC-----CCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHh
Confidence 2 3578999999999944 4443 889999999999999999999999999999877655544443
No 16
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.50 E-value=1.7e-13 Score=118.30 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=94.9
Q ss_pred HHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCC
Q 045637 151 RHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGD 220 (392)
Q Consensus 151 ~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd 220 (392)
......+|+++|+|.+++++.++.|+..++...|.+| +.+|||.+|.|++.. + +. .+..+++|+
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~-~~----~~~~~~~G~ 106 (154)
T 3pna_A 33 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-N-NE----WATSVGEGG 106 (154)
T ss_dssp HHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE-T-TE----EEEEECTTC
T ss_pred HHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE-C-CE----EEEEecCCC
Confidence 3445678999999999999999999999999999999 899999999999997 3 22 347899999
Q ss_pred eeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHH
Q 045637 221 FCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSK 275 (392)
Q Consensus 221 ~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~ 275 (392)
+|||..+ +.+. +++++|+|.++|+++.|++++|..++.++|.+..+
T Consensus 107 ~fGe~~~----~~~~-----~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~ 152 (154)
T 3pna_A 107 SFGELAL----IYGT-----PRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK 152 (154)
T ss_dssp EECCHHH----HHCC-----CCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred EeeehHh----hcCC-----CcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence 9999954 4443 78899999999999999999999999999987643
No 17
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.49 E-value=3.2e-13 Score=123.77 Aligned_cols=117 Identities=17% Similarity=0.263 Sum_probs=100.0
Q ss_pred HHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeee
Q 045637 155 LDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 155 ~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FG 223 (392)
.++|+++|+|.+++++.++.++..++.+.|.+| +.+|||.+|.|+++..+ +|++. .+..+++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRER--VLGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEE--EEEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceE--EEEecCCCCEEe
Confidence 468899999999999999999999999999999 89999999999998754 44432 457899999999
Q ss_pred chhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 224 EELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 224 E~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
|..+ +... +++.+++|+++|+++.|++++|..++.++|.+....++...+
T Consensus 83 ~~~~----~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 132 (231)
T 3e97_A 83 ETAV----LAHQ-----ERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLAR 132 (231)
T ss_dssp TTTT----TCCC-----CCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred eHHH----hCCC-----CceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9943 3333 789999999999999999999999999999998777665544
No 18
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.49 E-value=2.4e-13 Score=124.36 Aligned_cols=117 Identities=18% Similarity=0.241 Sum_probs=100.7
Q ss_pred HHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeee
Q 045637 155 LDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 155 ~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++++|+|.+++++.++.|+..++.+.|.+| +.+|||.+|.|+++..+ +|++ ..+..+++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRE--NLLTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCE--EEEEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcE--EEEEEecCCCEEe
Confidence 457899999999999999999999999999999 89999999999998754 3444 2457899999999
Q ss_pred chhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 224 EELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 224 E~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
|..+ +... +++.+++|.++|+++.|++++|..++.++|++....++...+
T Consensus 83 ~~~~----~~~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 132 (227)
T 3d0s_A 83 ELSI----FDPG-----PRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLAR 132 (227)
T ss_dssp CHHH----HSCS-----CCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred eHHH----cCCC-----CceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 9944 3333 789999999999999999999999999999998777765554
No 19
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.48 E-value=1.9e-13 Score=125.76 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=101.9
Q ss_pred HHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCee
Q 045637 154 CLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 154 ~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~F 222 (392)
..++|+++|+|.+++++.++.|+..++.+.|.+| +.+|||.+|.|++...+ +|++ ..+..+++|++|
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~--~~~~~~~~G~~~ 86 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSE--AVVSVFTRGESF 86 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCE--EEEEEEETTEEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCE--EEEEEeCCCCEe
Confidence 4678999999999999999999999999999999 89999999999999753 4444 245789999999
Q ss_pred echhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 223 GEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 223 GE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
|+..+ +... +++.+++|.++|+++.|++++|..++.++|++....++...+
T Consensus 87 G~~~~----~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 137 (237)
T 3fx3_A 87 GEAVA----LRNT-----PYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFG 137 (237)
T ss_dssp CHHHH----HHTC-----CCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred chHHH----hcCC-----CCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99954 3333 789999999999999999999999999999998777665554
No 20
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.48 E-value=3.5e-13 Score=127.78 Aligned_cols=121 Identities=16% Similarity=0.192 Sum_probs=102.1
Q ss_pred HHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC--CCceeeeeeEEeCC
Q 045637 151 RHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN--GGRTGFFNSITLRP 218 (392)
Q Consensus 151 ~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~--gg~~~~~~~~~L~~ 218 (392)
..++..+++++++|..+++..+..++..++...|.+| +.+|||.+|.|++.... |++. ..+..+++
T Consensus 152 ~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~--~~~~~l~~ 229 (291)
T 2qcs_B 152 RKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEF--VEVGRLGP 229 (291)
T ss_dssp HHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCE--EEEEEECT
T ss_pred HHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCcc--EEEEEeCC
Confidence 3455678899999999999999999999999999999 89999999999998543 3222 34688999
Q ss_pred CCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 219 GDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 219 Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
|++|||..+ +.+. ++++||+|.++|+++.|++++|..++..+|++..+.++....
T Consensus 230 G~~fGe~~l----l~~~-----~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~~ 284 (291)
T 2qcs_B 230 SDYFGEIAL----LMNR-----PKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNS 284 (291)
T ss_dssp TCEECSGGG----TCCC-----CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHHH
T ss_pred CCEecHHHH----cCCC-----CcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999944 4443 789999999999999999999999999999988777665443
No 21
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.48 E-value=3.1e-13 Score=120.56 Aligned_cols=118 Identities=9% Similarity=0.047 Sum_probs=99.2
Q ss_pred HHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeee
Q 045637 155 LDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 155 ~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FG 223 (392)
..+++.+|+|.+++++.++.++..++.+.|.+| +.+|||.+|.|+++..+ +|++. .+..++||++||
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~--~~~~~~~g~~~g 83 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQ--TTQFAIENWWLS 83 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEE--EEEEEETTCEEC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEE--EEEEccCCcEEe
Confidence 457888999999999999999999999999999 89999999999999753 44442 457899999999
Q ss_pred chhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 224 EELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 224 E~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
|.. +++... +++.+++|+++|+++.|++++|..++.++|++....++...+
T Consensus 84 e~~---~~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 134 (194)
T 3dn7_A 84 DYM---AFQKQQ-----PADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQK 134 (194)
T ss_dssp CHH---HHHHTC-----BCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred ehH---HHhcCC-----CCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 873 222333 788999999999999999999999999999998766655544
No 22
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.47 E-value=8.3e-13 Score=119.78 Aligned_cols=116 Identities=13% Similarity=0.193 Sum_probs=98.0
Q ss_pred HHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCe--e
Q 045637 156 DLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDF--C 222 (392)
Q Consensus 156 ~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~--F 222 (392)
++++++|+|.+++++.++.++..++.+.|.+| +.+|||.+|.|++...+ +|++ ..+..++||++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~--~~~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGRE--ITLYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCE--EEEEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCE--EEEEecCCCCeeeh
Confidence 57899999999999999999999999999999 89999999999999643 3444 34578999999 7
Q ss_pred echhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 223 GEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 223 GE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
|+..+ +... +++.+++|.++|+++.|++++|..++.++|++....++...+
T Consensus 81 g~~~~----~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 131 (220)
T 3dv8_A 81 SASCI----MRSI-----QFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMAT 131 (220)
T ss_dssp GGGGG----CTTC-----CCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHH----hCCC-----CCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 88843 3333 789999999999999999999999999999998776665544
No 23
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.46 E-value=4.2e-14 Score=119.19 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=94.3
Q ss_pred ChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEec-CC----------CEEEEEEeceEEEEecCCCceee
Q 045637 142 PTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLST-LR----------AQMLFIISGRLESSTTNGGRTGF 210 (392)
Q Consensus 142 P~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~-~G----------~~myfI~~G~V~v~~~~gg~~~~ 210 (392)
|+..|.+.......++|+++|+|..++++.++.|+..++.+.|. +| +.+|||.+|.|++...+|..
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~--- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKV--- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCE---
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcE---
Confidence 44555554455556789999999999999999999999999999 98 89999999999999744432
Q ss_pred eeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEE-EEeeeEEEEEEcHHHHHHHHHHhH
Q 045637 211 FNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTV-KALIEVEAFVLRAEDLKFVANQFR 270 (392)
Q Consensus 211 ~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV-~A~t~~el~~L~~edf~~ll~~fP 270 (392)
..+++|++|||..+ +... ++..++ +|.++|+++.|++++|..++++++
T Consensus 79 ---~~l~~G~~fG~~~~----~~~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPT----LDKQ-----YMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSS----SCCE-----ECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHh----cCCC-----cceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 45899999999843 3332 667788 999999999999999999987765
No 24
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.45 E-value=3e-13 Score=123.26 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=100.1
Q ss_pred HHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeee
Q 045637 155 LDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 155 ~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FG 223 (392)
.++|+++|+|++++++.++.++..++.+.|.+| +.+|||.+|.|++...+ +|++. .+..+++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEK--ILEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCB--CCCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEE--EEEEcCCCCEee
Confidence 568999999999999999999999999999999 89999999999998654 33332 357899999999
Q ss_pred chhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 224 EELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 224 E~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
|..+ +... |.++.+++|.++|+++.|++++|..++.++|.+....++...+
T Consensus 86 ~~~~----~~~~----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (227)
T 3dkw_A 86 EAMM----FMDT----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 136 (227)
T ss_dssp CTTT----TTTC----SBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHH
T ss_pred eHHh----cCCC----CCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9843 3332 2289999999999999999999999999999998777665554
No 25
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.45 E-value=5.6e-13 Score=129.29 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=99.7
Q ss_pred HHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCee
Q 045637 154 CLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 154 ~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~F 222 (392)
..++|+++|+|++++++.+..|+..++.+.|.+| +.+|||.+|.|+++..+ +|+. .+..+++|++|
T Consensus 11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~G~~f 87 (333)
T 4ava_A 11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA---IIARALPGMIV 87 (333)
T ss_dssp CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE---EEEEECTTCEE
T ss_pred hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE---EEEEecCCCEe
Confidence 3568999999999999999999999999999999 89999999999998654 3332 35789999999
Q ss_pred echhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 223 GEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 223 GE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
||.++ +... ++++||+|+++|+++.|++++|..++ ++|.+....++...+
T Consensus 88 Ge~~l----~~~~-----~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~ 137 (333)
T 4ava_A 88 GEIAL----LRDS-----PRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQ 137 (333)
T ss_dssp SHHHH----HHTC-----BCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHH
T ss_pred eHHHh----cCCC-----CceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHH
Confidence 99954 4444 78999999999999999999999999 999998766654443
No 26
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.44 E-value=3.4e-13 Score=128.78 Aligned_cols=121 Identities=17% Similarity=0.295 Sum_probs=104.2
Q ss_pred HHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC--CCceeeeeeEEeCC
Q 045637 151 RHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN--GGRTGFFNSITLRP 218 (392)
Q Consensus 151 ~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~--gg~~~~~~~~~L~~ 218 (392)
...+..+++++|+|..+++..+..++..++.+.|.+| +.+|||.+|.|++...+ +|+. ..+..+++
T Consensus 152 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~--~~~~~l~~ 229 (299)
T 3shr_A 152 HTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDP--VFLRTLGK 229 (299)
T ss_dssp HHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCC--EEEEEEET
T ss_pred HHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcc--eEEEEcCC
Confidence 3456778999999999999999999999999999999 89999999999999764 3433 34688999
Q ss_pred CCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 219 GDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 219 Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
|++|||..+ +... ++++||+|.++|+++.|++++|..++..+|++..+.++...+
T Consensus 230 G~~fGe~~l----l~~~-----~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~ 284 (299)
T 3shr_A 230 GDWFGEKAL----QGED-----VRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEA 284 (299)
T ss_dssp TCEECGGGG----SSSE-----ECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred CCEeChHHH----hCCC-----CcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhh
Confidence 999999944 4333 789999999999999999999999999999998877766554
No 27
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.43 E-value=1.4e-12 Score=120.31 Aligned_cols=119 Identities=10% Similarity=0.084 Sum_probs=100.1
Q ss_pred HHHHhcccccCCCCChhhHHHHhhh--cEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCC
Q 045637 154 CLDLVRRVPFFSQMDDQLPDALCER--LVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGD 220 (392)
Q Consensus 154 ~~~lL~~vplF~~l~~~~L~~L~~~--lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd 220 (392)
...+++++|+|.+++++.++.|+.. ++.+.|.+| +.+|||.+|.|+++..+ +|++ ..+..+++|+
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~--~~l~~~~~G~ 93 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIY--TVIEQIEAPY 93 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSC--EEEEEEESSE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCE--EEEEEccCCC
Confidence 3567999999999999999999998 999999999 89999999999998643 3333 2457899999
Q ss_pred eeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 221 FCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 221 ~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
+|||..+ +... ++++.+++|+++|+++.|++++|..++.++|++....++...+
T Consensus 94 ~fG~~~~----~~~~----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 147 (232)
T 1zyb_A 94 LIEPQSL----FGMN----TNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSN 147 (232)
T ss_dssp EECGGGG----SSSC----CBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred eeeehHH----hCCC----CCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999944 3332 2389999999999999999999999999999998777665544
No 28
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.42 E-value=9.2e-13 Score=121.13 Aligned_cols=110 Identities=17% Similarity=0.207 Sum_probs=96.6
Q ss_pred HHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCe
Q 045637 152 HLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDF 221 (392)
Q Consensus 152 ~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~ 221 (392)
.++..+++++|+|..+++..+..++..++.+.|.+| +.+|||.+|.|++...+.+ .+..+++|++
T Consensus 121 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~-----~~~~l~~g~~ 195 (246)
T 3of1_A 121 LMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG-----VINKLKDHDY 195 (246)
T ss_dssp HHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE-----EEEEEETTCE
T ss_pred HHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc-----eEEEcCCCCc
Confidence 344567889999999999999999999999999999 8999999999999986543 3578999999
Q ss_pred eechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHH
Q 045637 222 CGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSK 275 (392)
Q Consensus 222 FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~ 275 (392)
|||..+ +... ++++||+|.++|+++.|++++|..++..+|++..+
T Consensus 196 fGe~~~----~~~~-----~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~~ 240 (246)
T 3of1_A 196 FGEVAL----LNDL-----PRQATVTATKRTKVATLGKSGFQRLLGPAVDVLKL 240 (246)
T ss_dssp ECHHHH----HHTC-----BCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHHH
T ss_pred ccHHHH----hCCC-----CcccEEEECCCEEEEEEeHHHHHHHhccHHHHHhc
Confidence 999954 4443 78999999999999999999999999999988644
No 29
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.41 E-value=3e-12 Score=116.84 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=89.5
Q ss_pred HHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeee
Q 045637 155 LDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 155 ~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FG 223 (392)
...+++.|+|.+++++.++.++..++.+.|.+| +.+|||.+|.|+++..+ +|++ ..+..+++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~--~~~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRE--LVLGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCE--EEEEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCE--EEEEEecCCCEEE
Confidence 457899999999999999999999999999999 89999999999998644 4444 2457899999999
Q ss_pred chhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHh-----HHHHHHHHHHHhh
Q 045637 224 EELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQF-----RRLHSKKLQHTFC 282 (392)
Q Consensus 224 E~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~f-----P~l~~~~lq~~~r 282 (392)
|..+ +.. .++++.+++|.++|+++.|++++|..++.++ |++....++...+
T Consensus 88 ~~~~----~~~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~ 143 (230)
T 3iwz_A 88 EMGL----FIE----SDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK 143 (230)
T ss_dssp CGGG----TSC----CSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH
T ss_pred ehhh----hcC----CCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH
Confidence 9954 222 1368899999999999999999999999999 9988776665544
No 30
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.41 E-value=9.5e-13 Score=131.33 Aligned_cols=126 Identities=16% Similarity=0.198 Sum_probs=105.5
Q ss_pred HHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCC
Q 045637 151 RHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGD 220 (392)
Q Consensus 151 ~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd 220 (392)
+.++..+++++++|..+++..+..|+..++...|.+| +.+|||.+|.|+++..+........+..+++|+
T Consensus 243 ~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd 322 (381)
T 4din_B 243 RKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSD 322 (381)
T ss_dssp HHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTC
T ss_pred HHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCC
Confidence 4556678999999999999999999999999999999 899999999999997542111123468899999
Q ss_pred eeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 045637 221 FCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFCFYS 285 (392)
Q Consensus 221 ~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r~~s 285 (392)
+|||..+ +... +|++||+|.++|+++.|++++|..++..+|++..+.++..-++.+
T Consensus 323 ~fGe~al----l~~~-----~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l~ 378 (381)
T 4din_B 323 YFGEIAL----LLNR-----PRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFIS 378 (381)
T ss_dssp EECTTGG----GSCC-----BCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHHT
T ss_pred EechHHH----hCCC-----CceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 9999944 4443 789999999999999999999999999999998877766555443
No 31
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.40 E-value=2.1e-12 Score=118.33 Aligned_cols=114 Identities=12% Similarity=0.180 Sum_probs=95.4
Q ss_pred hcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechh
Q 045637 158 VRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEEL 226 (392)
Q Consensus 158 L~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~ 226 (392)
..++|+|..++++.++.|+..++.+.|.+| +.+|||.+|.|+++..+ +|++ ..+..+++|++|||..
T Consensus 12 ~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~--~~~~~~~~G~~~G~~~ 89 (232)
T 2gau_A 12 HLLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRF--HISRIVKPGQFFGMRP 89 (232)
T ss_dssp GGSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CC--CEEEEECTTCEESHHH
T ss_pred ccccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCE--EEEEEeCCCCEeeeeh
Confidence 346899999999999999999999999999 89999999999998653 3333 2458899999999995
Q ss_pred hHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 227 LAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 227 L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
+ +... +++.+++|.++|+++.|++++|..++.++|++....++...+
T Consensus 90 ~----~~~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (232)
T 2gau_A 90 Y----FAEE-----TCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK 136 (232)
T ss_dssp H----HHTS-----CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred h----hCCC-----CcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 4 3333 688999999999999999999999999999998777665544
No 32
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.8e-12 Score=119.24 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=96.8
Q ss_pred HHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 154 CLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 154 ~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
..++|+++|+|++++++.++.|+..++...|.+| +.+|||.+|.|++... + +. +..+++|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~-~-~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVN-D-NK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEEST-T-SC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEEC-C-EE----EEecCCCCeee
Confidence 3568999999999999999999999999999999 8999999999999862 2 21 37899999999
Q ss_pred chhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHh
Q 045637 224 EELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTF 281 (392)
Q Consensus 224 E~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~ 281 (392)
|..+ +.+. ++++||+|.++|+++.|++++|..++.++|...........
T Consensus 79 e~~l----~~~~-----~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 127 (246)
T 3of1_A 79 ELAL----MYNS-----PRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLL 127 (246)
T ss_dssp HHHH----HHTC-----CCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHH
T ss_pred hhHH----hcCC-----CCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHH
Confidence 9844 4444 78999999999999999999999999999977655444433
No 33
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.40 E-value=2.6e-12 Score=121.82 Aligned_cols=120 Identities=14% Similarity=0.153 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeC
Q 045637 148 DIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLR 217 (392)
Q Consensus 148 dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~ 217 (392)
.-..+...++|+++|+|++++++.++.|+..++...|.+| +.+|||++|.|++.. +| . .+..++
T Consensus 31 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g-~----~~~~l~ 104 (291)
T 2qcs_B 31 YKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NN-E----WATSVG 104 (291)
T ss_dssp HHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TT-E----EEEEEC
T ss_pred HHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CC-e----EEEEcC
Confidence 3334566789999999999999999999999999999999 899999999999997 33 2 357899
Q ss_pred CCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 218 PGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 218 ~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
+|++|||.. ++... ++++||+|.++|+++.|++++|..++.++|.+..+.++...+
T Consensus 105 ~G~~fGe~~----l~~~~-----~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 105 EGGSFGELA----LIYGT-----PRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp TTCEECGGG----GTCCC-----BCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHH----HhcCC-----CCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999984 44443 789999999999999999999999999999988777665554
No 34
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.37 E-value=2.7e-12 Score=116.90 Aligned_cols=109 Identities=7% Similarity=0.098 Sum_probs=95.3
Q ss_pred HHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeech
Q 045637 156 DLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 156 ~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~ 225 (392)
.+|+++|+|..++++.++.++..++.+.|.+| +.+|||.+|.|++....+|++. .+..+++|++|||
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~--~~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEF--TLAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEE--EEEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEE--EEEEcCCCCEeCC-
Confidence 46899999999999999999999999999999 8999999999999654455543 4578999999998
Q ss_pred hhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 226 LLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 226 ~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
+++.+++|.++|+++.|++++|..++.++|++....++...+
T Consensus 81 ---------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 122 (220)
T 2fmy_A 81 ---------------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGD 122 (220)
T ss_dssp ---------------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred ---------------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 247899999999999999999999999999998777665554
No 35
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.36 E-value=6.6e-13 Score=114.69 Aligned_cols=52 Identities=12% Similarity=0.349 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
.|..|+||++.|+||+||||++|.+..+++++++++++|++++|+++|.+.+
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~ 94 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITN 94 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999987
No 36
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.35 E-value=5.6e-12 Score=127.88 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=110.7
Q ss_pred hhccCCCCHHHHH-HhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEE
Q 045637 126 WLATRGVDEESIL-HALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFII 194 (392)
Q Consensus 126 w~~~~g~dee~ll-~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~ 194 (392)
+....+++.+.+- -..|+..|.+.......+.|+++|+|.+++++.++.|+..++...|.+| +.+|||.
T Consensus 11 ~~~~~~~~~e~~~~l~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~ 90 (469)
T 1o7f_A 11 HAAHSQSSAEWIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVL 90 (469)
T ss_dssp --------CHHHHHHTSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEE
T ss_pred ccccccCcHHHHHHhcCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEE
Confidence 3333444444431 2367888888888888999999999999999999999999999999999 8999999
Q ss_pred eceEEEEecC-CCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHH
Q 045637 195 SGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLH 273 (392)
Q Consensus 195 ~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~ 273 (392)
+|.|+++..+ +|......+..+++|++|||. + +... ++++||+|.++|+++.|++++|..++.++|.+.
T Consensus 91 ~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~----~-l~~~-----~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~ 160 (469)
T 1o7f_A 91 AGSLDVKVSETSSHQDAVTICTLGIGTAFGES----I-LDNT-----PRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (469)
T ss_dssp ESCEEEEECSSSCGGGCEEEEEECTTCEECGG----G-GGTC-----BCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGT
T ss_pred eeEEEEEEecCCCCCcceEEEEccCCCCcchh----h-hCCC-----CccceEEEccceeEEEEcHHHHHHHHHhCHHHH
Confidence 9999998654 332111346889999999998 3 3333 789999999999999999999999999999866
Q ss_pred HHHH
Q 045637 274 SKKL 277 (392)
Q Consensus 274 ~~~l 277 (392)
...+
T Consensus 161 ~~l~ 164 (469)
T 1o7f_A 161 AGLL 164 (469)
T ss_dssp TTTS
T ss_pred HHHH
Confidence 4433
No 37
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.35 E-value=4.6e-12 Score=127.99 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEE
Q 045637 146 RRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSIT 215 (392)
Q Consensus 146 r~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~ 215 (392)
|.+-..+...++|+++|+|++++++.+..|+..++.+.|.+| +.+|||++|.|+++...+|+.. .+..
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~--~v~~ 212 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGR--CVGN 212 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEE--EEEE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEE--EEEE
Confidence 444456667889999999999999999999999999999999 8999999999999875555543 3578
Q ss_pred eCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHH
Q 045637 216 LRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKK 276 (392)
Q Consensus 216 L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~ 276 (392)
+++|++|||.+ ++.+. ++++||+|.++|+++.|++++|..++..+|.+....
T Consensus 213 l~~G~~fGe~a----ll~~~-----pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~ 264 (416)
T 3tnp_B 213 YDNRGSFGELA----LMYNT-----PKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKM 264 (416)
T ss_dssp EESCCEECGGG----GTSCC-----CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSS
T ss_pred ecCCCEEeeHH----HhcCC-----CcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHH
Confidence 99999999994 44444 789999999999999999999999999999886443
No 38
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.34 E-value=3e-12 Score=116.90 Aligned_cols=108 Identities=12% Similarity=0.048 Sum_probs=94.0
Q ss_pred HhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechh
Q 045637 157 LVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEEL 226 (392)
Q Consensus 157 lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~ 226 (392)
+|+++|+|.+++++.++.|+..++.+.|.+| +.+|||.+|.|+++...+|++. .+..+++|++|| .
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~--~~~~~~~G~~fG-~- 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREI--SLFYLTSGDMFC-M- 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEE--EEEEEETTCEEE-S-
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEE--EEEEcCCCCEec-C-
Confidence 4788999999999999999999999999999 8999999999999744445543 458899999999 2
Q ss_pred hHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 227 LAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 227 L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
+++++++|+++|+++.|++++|..++.++|.+....++...+
T Consensus 77 --------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 118 (222)
T 1ft9_A 77 --------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR 118 (222)
T ss_dssp --------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred --------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 678999999999999999999999999999988777665554
No 39
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.31 E-value=1.1e-11 Score=123.62 Aligned_cols=118 Identities=13% Similarity=0.185 Sum_probs=101.3
Q ss_pred HHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCC
Q 045637 150 QRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPG 219 (392)
Q Consensus 150 ~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~G 219 (392)
.++...++|+++|+|++++++.+..|+..++.+.|.+| +.+|||.+|.|++.. +| + .+..+++|
T Consensus 124 ~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~-~~-~----~v~~l~~G 197 (381)
T 4din_B 124 TMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV-NG-E----WVTNISEG 197 (381)
T ss_dssp HHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE-TT-E----EEEEEESS
T ss_pred HHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE-CC-e----EeeeCCCC
Confidence 34455788999999999999999999999999999999 899999999999996 22 2 24779999
Q ss_pred CeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 220 DFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 220 d~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
++|||.+ ++.+. ++++||+|.++|+++.|++++|..++.++|.+..+.+....+
T Consensus 198 ~~fGe~a----ll~~~-----~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~ 251 (381)
T 4din_B 198 GSFGELA----LIYGT-----PRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 251 (381)
T ss_dssp CCBCGGG----GTSCC-----BCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEchH----HhcCC-----CcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhh
Confidence 9999994 44444 789999999999999999999999999999988766654443
No 40
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.30 E-value=3.3e-11 Score=108.36 Aligned_cols=111 Identities=13% Similarity=0.090 Sum_probs=89.4
Q ss_pred ccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechhhHHH
Q 045637 162 PFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAWA 230 (392)
Q Consensus 162 plF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~a 230 (392)
++++.++++.++.++..++.+.|.+| +.+|||.+|.|+++..+ +|++ ..+..+++|++|||..++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~~g~~~G~~~~~-- 77 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKE--MILSYLNQGDFIGELGLF-- 77 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCE--EEEEEEETTCEESCTTTT--
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCE--EEEEEcCCCCEeeeHHHh--
Confidence 56778999999999999999999999 89999999999998653 4444 345789999999999542
Q ss_pred hhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 231 LLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 231 L~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
.. .++++.+++|.++|+++.|++++|..++.++|++....++...+
T Consensus 78 --~~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 123 (210)
T 3ryp_A 78 --EE----GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 123 (210)
T ss_dssp --ST----TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred --cC----CCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence 21 12688999999999999999999999999999998776655544
No 41
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.29 E-value=5.6e-12 Score=127.38 Aligned_cols=115 Identities=9% Similarity=0.212 Sum_probs=95.8
Q ss_pred HHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecCC-------CceeeeeeEE
Q 045637 153 LCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTNG-------GRTGFFNSIT 215 (392)
Q Consensus 153 l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~g-------g~~~~~~~~~ 215 (392)
++..+++++++|..+++..+..|+..++.+.|.+| +.+|||.+|.|++...+. |+. ..+..
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~--~~l~~ 341 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGA--VEIAR 341 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC--------------CEEEE
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCce--eEEEE
Confidence 44567899999999999999999999999999999 899999999999986543 333 34688
Q ss_pred eCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHH
Q 045637 216 LRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQ 278 (392)
Q Consensus 216 L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq 278 (392)
+++|++|||.. ++.+. ++++||+|.++|+++.|++++|..++..+|++..+.++
T Consensus 342 l~~G~~fGE~a----ll~~~-----~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~ 395 (416)
T 3tnp_B 342 CFRGQYFGELA----LVTNK-----PRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIA 395 (416)
T ss_dssp ECTTCEESGGG----GTCCS-----CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC--
T ss_pred eCCCCEecHHH----HhCCC-----CceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHH
Confidence 99999999994 44443 79999999999999999999999999999998755444
No 42
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.27 E-value=7.7e-11 Score=105.69 Aligned_cols=106 Identities=22% Similarity=0.193 Sum_probs=87.8
Q ss_pred CChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechhhHHHhhhcC
Q 045637 167 MDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAWALLSKS 235 (392)
Q Consensus 167 l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~ 235 (392)
|+++.++.|+..++.+.|.+| +.+|||.+|.|+++..+ +|++ ..+..+++|++|||..+ +..
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~--~~~~~~~~g~~~G~~~~----~~~- 73 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGRE--MIIGYLNSGDFFGELGL----FEK- 73 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCE--EEEEEEETTCEESCTTT----CC--
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCE--EEEEEcCCCCCcccHHH----hcC-
Confidence 688999999999999999999 89999999999998654 3443 34588999999999954 221
Q ss_pred CCCCC---CcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 236 TVNLP---SSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 236 ~~~~~---~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
.+ +++.+++|+++|+++.|++++|..++.++|.+....++...+
T Consensus 74 ---~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 120 (207)
T 2oz6_A 74 ---EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD 120 (207)
T ss_dssp -------CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ---CCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 12 578999999999999999999999999999998777665544
No 43
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.26 E-value=2.8e-12 Score=111.97 Aligned_cols=52 Identities=10% Similarity=0.151 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
.|..|+||++.|+||+||||++|.+..+++|+++.+++|++++++++|++..
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAV 103 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999987
No 44
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.25 E-value=2e-11 Score=123.82 Aligned_cols=114 Identities=13% Similarity=0.145 Sum_probs=93.0
Q ss_pred HHHHHHHhcccccCCCCChhhHHHHhhhcEE-EEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCC
Q 045637 151 RHLCLDLVRRVPFFSQMDDQLPDALCERLVS-SLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPG 219 (392)
Q Consensus 151 ~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~-~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~G 219 (392)
.....+.++++|+|.++++..+..|+..++. +.|.+| +.+|||.+|.|+++..+. . .+..+++|
T Consensus 332 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~-~----~~~~l~~G 406 (469)
T 1o7f_A 332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK-G----VVCTLHEG 406 (469)
T ss_dssp HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT-E----EEEEEETT
T ss_pred HHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC-e----eEEEecCC
Confidence 3445678999999999999999999999985 478888 899999999999997432 1 35789999
Q ss_pred CeeechhhHHHhhhcCCCCCCCcceEEEEee-eEEEEEEcHHHHHHHHHHhHHHHHHHHH
Q 045637 220 DFCGEELLAWALLSKSTVNLPSSTRTVKALI-EVEAFVLRAEDLKFVANQFRRLHSKKLQ 278 (392)
Q Consensus 220 d~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t-~~el~~L~~edf~~ll~~fP~l~~~~lq 278 (392)
++|||.. ++... ++++||+|.+ +|+++.|++++|..++.++|.+..+..+
T Consensus 407 ~~fGe~~----ll~~~-----~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e 457 (469)
T 1o7f_A 407 DDFGKLA----LVNDA-----PRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE 457 (469)
T ss_dssp CEECGGG----GTCCS-----CCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC------
T ss_pred CEEEEeh----hhcCC-----CceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHh
Confidence 9999994 44443 7899999999 7999999999999999999987755433
No 45
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.20 E-value=1.5e-10 Score=108.70 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=87.4
Q ss_pred CCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechhhHHHhh
Q 045637 164 FSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAWALL 232 (392)
Q Consensus 164 F~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~aL~ 232 (392)
...++++.++.|+..++.+.|.+| +.+|||.+|.|+++..+ +|++ ..+..+++|++|||..++
T Consensus 54 ~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e--~~~~~~~~G~~~Ge~~~~---- 127 (260)
T 3kcc_A 54 GKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKE--MILSYLNQGDFIGELGLF---- 127 (260)
T ss_dssp -----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCE--EEEEEEETTCEESCTTTT----
T ss_pred cCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCE--EEEEEcCCCCEEeehHHh----
Confidence 355899999999999999999999 89999999999999653 4443 245889999999999542
Q ss_pred hcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 233 SKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 233 ~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
.. .++++.+++|+++|+++.|++++|..++.++|++....++...+
T Consensus 128 ~~----~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~ 173 (260)
T 3kcc_A 128 EE----GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 173 (260)
T ss_dssp ST----TCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred CC----CCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 21 12688999999999999999999999999999998766655443
No 46
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.18 E-value=1.4e-10 Score=105.31 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=86.6
Q ss_pred cccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechhhHH
Q 045637 161 VPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAW 229 (392)
Q Consensus 161 vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~ 229 (392)
-|.|+..++...+.++..++.+.|.+| +.+|||.+|.|+++..+ +|++ ..+..+++|++|||..+
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~--~~~~~~~~G~~~G~~~~-- 79 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKT--LEIDEIKPVQIIASGFI-- 79 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCE--EEEEEECSSEESSGGGT--
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCE--EEEEEecCCCEeeeHHH--
Confidence 478899999999999999999999999 89999999999998653 4444 24578999999999954
Q ss_pred HhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 230 ALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 230 aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
+.. .++++.+++|+++|+++.|++++|..++.++|++....++...+
T Consensus 80 --~~~----~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 126 (213)
T 1o5l_A 80 --FSS----EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE 126 (213)
T ss_dssp --TSS----SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred --hcC----CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 221 12678999999999999999999999999999998777766554
No 47
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.17 E-value=1.2e-10 Score=129.44 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=101.3
Q ss_pred HHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-
Q 045637 136 SILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN- 204 (392)
Q Consensus 136 ~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~- 204 (392)
..|+.-| .-|.+=-..+....|+++++|+++++..+..||..|+...|.+| +.+|+|++|.|.|...+
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 3455544 34543333445668999999999999999999999999999998 99999999999998542
Q ss_pred CCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHH
Q 045637 205 GGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHS 274 (392)
Q Consensus 205 gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~ 274 (392)
++......+..+++|++||| ++ +.+. +|++||+|.++|++++|++++|..++..||+...
T Consensus 102 ~~~~~~~~v~~l~~G~sFGE-al----l~n~-----pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~ 161 (999)
T 4f7z_A 102 SSHQDAVTICTLGIGTAFGE-SI----LDNT-----PRHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (999)
T ss_dssp SCTTSCEEEEEEETTCEECG-GG----GGTC-----CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred CCCCCceeEEEecCCcchhh-hh----ccCC-----CcceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence 11111234688999999999 43 2333 7999999999999999999999999999997653
No 48
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.13 E-value=3.7e-10 Score=104.94 Aligned_cols=111 Identities=8% Similarity=0.010 Sum_probs=91.8
Q ss_pred hcccccCCCCChhhHHHHhhhcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechh
Q 045637 158 VRRVPFFSQMDDQLPDALCERLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEEL 226 (392)
Q Consensus 158 L~~vplF~~l~~~~L~~L~~~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~ 226 (392)
+.++..|..++++.++.|+..++.+.|.+| +.+|||.+|.|++...+ +|++ ..+..+++|++||| .
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~--~~~~~~~~G~~~G~-~ 87 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSE--KLLYYAGGNSLIGK-L 87 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCE--EEEEEECTTCEECC-C
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCE--EEEEEecCCCEEee-e
Confidence 334444489999999999999999999999 88999999999998653 4444 24588999999999 3
Q ss_pred hHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 227 LAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 227 L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
+. .. ++.+++|+++|+++.|++++|..++.++|++....++...+
T Consensus 88 l~----------~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 132 (250)
T 3e6c_C 88 YP----------TG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLT 132 (250)
T ss_dssp SC----------CS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred cC----------CC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 31 13 78999999999999999999999999999998777665554
No 49
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.08 E-value=9.5e-11 Score=101.04 Aligned_cols=56 Identities=14% Similarity=0.293 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 43 KFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 43 s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
+....|..|+||++.|+||+||||++|.+..+++++++.+++|++++++++|.+.+
T Consensus 36 ~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~ 91 (139)
T 3eff_K 36 AQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALAT 91 (139)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457999999999999999999999999999999999999999999999999987
No 50
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.05 E-value=1.4e-10 Score=102.09 Aligned_cols=57 Identities=12% Similarity=0.245 Sum_probs=53.6
Q ss_pred cchHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 42 SKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 42 ~s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
.+.+..|..|+||++.|+||+||||++|.+..+++++++.+++|++++++++|.+.+
T Consensus 79 ~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~ 135 (155)
T 2a9h_A 79 GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVAT 135 (155)
T ss_dssp CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567999999999999999999999999999999999999999999999999998
No 51
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.04 E-value=6.8e-10 Score=119.18 Aligned_cols=124 Identities=16% Similarity=0.196 Sum_probs=101.7
Q ss_pred HHHHHhCChhhHHHHHHHHHHHHhcccccCCCCChhhHHHHhhhcE-EEEecCC----------CEEEEEEeceEEEEec
Q 045637 135 ESILHALPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLPDALCERLV-SSLSTLR----------AQMLFIISGRLESSTT 203 (392)
Q Consensus 135 e~ll~~LP~~Lr~dI~~~l~~~lL~~vplF~~l~~~~L~~L~~~lk-~~~y~~G----------~~myfI~~G~V~v~~~ 203 (392)
..+|.. |+..|.+.......+.++++|+|.+++++.++.|+..+. .+.|.+| +.+|||++|.|+++..
T Consensus 12 r~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 345544 444455555555678999999999999999999999998 6888888 8999999999999975
Q ss_pred CCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEee-eEEEEEEcHHHHHHHHHHhHHHH
Q 045637 204 NGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALI-EVEAFVLRAEDLKFVANQFRRLH 273 (392)
Q Consensus 204 ~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t-~~el~~L~~edf~~ll~~fP~l~ 273 (392)
+ . . .+..+++|++|||..+ +... +++++|+|.+ +|+++.|++++|..++.++|.++
T Consensus 91 g-~--~--il~~l~~Gd~fGe~al----~~~~-----~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~ 147 (694)
T 3cf6_E 91 G-K--G--VVCTLHEGDDFGKLAL----VNDA-----PRAASIVLREDNCHFLRVDKEDFNRILRDVEANT 147 (694)
T ss_dssp T-T--E--EEEEEETTCEECHHHH----HHTC-----BCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCC
T ss_pred C-C--E--EEEEeCCCCEeehHHH----hCCC-----CceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHH
Confidence 3 2 2 3588999999999844 4443 7899999999 59999999999999999999763
No 52
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.04 E-value=1.7e-10 Score=97.50 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 43 KFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 43 s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
+....|..|+||++.|+||+||||++|.+..+++++++.+++|++++++++|++.+
T Consensus 57 ~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~ 112 (122)
T 2ih3_C 57 AQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALAT 112 (122)
T ss_dssp CCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457999999999999999999999999999999999999999999999999887
No 53
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.03 E-value=1.2e-09 Score=121.46 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=87.5
Q ss_pred HHHHHHhcccccCCCCChhhHHHHhhhcEEEEe-cCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCC
Q 045637 152 HLCLDLVRRVPFFSQMDDQLPDALCERLVSSLS-TLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGD 220 (392)
Q Consensus 152 ~l~~~lL~~vplF~~l~~~~L~~L~~~lk~~~y-~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd 220 (392)
....+.++++|+|++++...+..||..+....+ ..| +.+|||.+|.|+|+....+ .++.|++||
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~-----~v~~L~~Gd 407 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG-----VVCTLHEGD 407 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTE-----EEEEEETTC
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCc-----ceEEecCCC
Confidence 445678999999999999999999999986544 445 9999999999999864322 247899999
Q ss_pred eeechhhHHHhhhcCCCCCCCcceEEEEeee-EEEEEEcHHHHHHHHHHh
Q 045637 221 FCGEELLAWALLSKSTVNLPSSTRTVKALIE-VEAFVLRAEDLKFVANQF 269 (392)
Q Consensus 221 ~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~-~el~~L~~edf~~ll~~f 269 (392)
+|||. ||+.+. +|.+||+|.++ |++++|+++||..++.+-
T Consensus 408 ~FGEl----ALL~~~-----PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 408 DFGKL----ALVNDA-----PRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp EECGG----GGTCSC-----BCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred cccch----hhccCC-----CeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 99999 455554 89999999985 999999999999999764
No 54
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.00 E-value=5.2e-10 Score=87.97 Aligned_cols=52 Identities=8% Similarity=0.123 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
.|..|+||++.|+||+||||+.|.+..+++++++.+++|+.++++.+|++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~ 79 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLE 79 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999998763
No 55
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.97 E-value=5.8e-10 Score=90.51 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++++|.++.
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~ 83 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAV 83 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999987
No 56
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=98.96 E-value=5.2e-09 Score=96.94 Aligned_cols=104 Identities=14% Similarity=0.117 Sum_probs=83.2
Q ss_pred hhhHHHHhhhcE---EEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechhhHHHhhhc
Q 045637 169 DQLPDALCERLV---SSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAWALLSK 234 (392)
Q Consensus 169 ~~~L~~L~~~lk---~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~ 234 (392)
+++++.|+.... .+.|.+| +.+|||.+|.|++...+ +|++. .+..+++|++||+..+ +..
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~--~l~~~~~g~~~G~~~~----~~~ 103 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEI--TVALLRENSVFGVLSL----LTG 103 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEE--EEEEECTTCEESCHHH----HSS
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEE--EEEEecCCCEEcchHH----hCC
Confidence 667888888887 8888888 89999999999998643 34442 4588999999999854 332
Q ss_pred CCCCCC-CcceEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 235 STVNLP-SSTRTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 235 ~~~~~~-~rt~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
. | ++..+++|+++|+++.|++++|..++.++|++....++...+
T Consensus 104 ~----~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 148 (243)
T 3la7_A 104 N----KSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS 148 (243)
T ss_dssp C----CSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C----CCcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 2 1 256899999999999999999999999999998776655443
No 57
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=98.96 E-value=8.8e-10 Score=92.07 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++.+.+
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~ 100 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAV 100 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999987
No 58
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=98.94 E-value=8.6e-09 Score=95.02 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=81.1
Q ss_pred CCCChhhHHHHhh--hcEEEEecCC----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechhhHHHh
Q 045637 165 SQMDDQLPDALCE--RLVSSLSTLR----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAWAL 231 (392)
Q Consensus 165 ~~l~~~~L~~L~~--~lk~~~y~~G----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~aL 231 (392)
++++++.++.+.. .++.+.|.+| +.+|||.+|.|+++..+ +|++. .+..+ +|++|||..+
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~--~~~~~-~G~~~Ge~~~---- 74 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIM--NLQYY-KGAFVIMSGF---- 74 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEE--EEEEE-ESSEEEESBC----
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEE--EEEEc-CCCEecchhh----
Confidence 3577888888874 5888888888 89999999999998643 44443 34667 9999999954
Q ss_pred hhcCCCCCCC-cceEEEEe-eeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHhh
Q 045637 232 LSKSTVNLPS-STRTVKAL-IEVEAFVLRAEDLKFVANQFRRLHSKKLQHTFC 282 (392)
Q Consensus 232 ~~~~~~~~~~-rt~TV~A~-t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~r 282 (392)
+... ++ +..++.|+ ++|+++.|++++|..++.++|++....++...+
T Consensus 75 ~~~~----~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 123 (238)
T 2bgc_A 75 IDTE----TSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQK 123 (238)
T ss_dssp TTTC----CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hcCC----CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 2221 11 25777777 499999999999999999999998777665544
No 59
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=98.91 E-value=9.1e-10 Score=101.62 Aligned_cols=56 Identities=14% Similarity=0.350 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 43 KFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 43 s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
+....|..|+||++.||||+||||++|.+..+++++++.|++|++++++++|++.+
T Consensus 161 ~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~ 216 (223)
T 1orq_C 161 SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSN 216 (223)
T ss_dssp CSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468999999999999999999999999999999999999999999999999875
No 60
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.89 E-value=1.1e-10 Score=95.62 Aligned_cols=55 Identities=11% Similarity=0.182 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 44 FLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 44 ~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
....|..|+||++.|+||+||||++|.+..+++++++.+++|++++++++|.+.+
T Consensus 37 ~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~ 91 (103)
T 2k1e_A 37 ALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALAT 91 (103)
T ss_dssp CCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred ccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999987
No 61
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.79 E-value=5.2e-10 Score=99.43 Aligned_cols=56 Identities=14% Similarity=0.293 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 43 KFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 43 s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
+....|+.|+||++.|+||+||||++|.+..+++++++.+++|++++++++|.+.+
T Consensus 63 ~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~ 118 (166)
T 3pjs_K 63 AQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALAT 118 (166)
T ss_dssp CCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSS
T ss_pred cccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999999999999999999999999999999999999999999988
No 62
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.68 E-value=1.8e-08 Score=97.92 Aligned_cols=52 Identities=6% Similarity=0.106 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
.|..|+||+++|+||+||||++|.+...++|+++.+++|+.+++++++.+..
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~ 166 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGD 166 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999987
No 63
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.62 E-value=3.7e-08 Score=96.37 Aligned_cols=52 Identities=10% Similarity=0.087 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
.|..++||++.||||+||||+.|.+...++++++.+++|++++|+++|.+.+
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~ 129 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFI 129 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999987
No 64
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.60 E-value=2.4e-07 Score=82.54 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=63.6
Q ss_pred EEecCC---CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEE
Q 045637 182 SLSTLR---AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVL 257 (392)
Q Consensus 182 ~~y~~G---~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L 257 (392)
.++.+| +.+|||.+|.|+++..+ +|++ ..+..+++|++||| .++ ... +++.+++|.++|+++.|
T Consensus 9 ~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~~G~~~Ge-~~~----~~~-----~~~~~~~A~~~~~v~~i 76 (195)
T 3b02_A 9 TIYLRGEEARTLYRLEEGLVRVVELLPDGRL--ITLRHVLPGDYFGE-EAL----EGK-----AYRYTAEAMTEAVVQGL 76 (195)
T ss_dssp EEECTTSBCCCEEEEEESCEEEEEECTTSCE--EEEEEECTTCEECG-GGG----TCS-----BCSSEEEESSSEEEEEE
T ss_pred EEECCCCCCCeEEEEEeCEEEEEEECCCCCE--EEEEEecCCCEech-hhh----CCC-----CceeEEEECCcEEEEEE
Confidence 355566 89999999999998653 3443 24588999999999 763 222 68899999999999999
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHh
Q 045637 258 RAEDLKFVANQFRRLHSKKLQHTF 281 (392)
Q Consensus 258 ~~edf~~ll~~fP~l~~~~lq~~~ 281 (392)
++++|. |++....++...
T Consensus 77 ~~~~~~------p~~~~~~~~~l~ 94 (195)
T 3b02_A 77 EPRAMD------HEALHRVARNLA 94 (195)
T ss_dssp CGGGCC------HHHHHHHHHHHH
T ss_pred cHHHcC------HHHHHHHHHHHH
Confidence 999998 877766555444
No 65
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.56 E-value=3.5e-08 Score=96.96 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 46 EKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 46 ~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
..|..+|||++.|+||+||||++|.+...++++++.+++|++++++++|.+.+
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~ 147 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFA 147 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999987
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.56 E-value=5.8e-08 Score=94.18 Aligned_cols=54 Identities=11% Similarity=0.074 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 45 LEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 45 ~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
...|..++||++.|+||+||||++|.+...++++++.+++|++++|+++|.+.+
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~ 133 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYA 133 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999998876
No 67
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.46 E-value=2.8e-07 Score=88.30 Aligned_cols=52 Identities=10% Similarity=0.200 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
.|..|+||+++|+||+||||++|.+...++|+++.+++|+.+++++++.+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~ 144 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQ 144 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999987
No 68
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.46 E-value=8.2e-08 Score=99.63 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=53.4
Q ss_pred cchHHHHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 42 SKFLEKYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 42 ~s~~~kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
.+.+..|..|+||++.||||+||||+.|.+..+++|+++++++|+++++++||.|.+
T Consensus 370 ~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~ 426 (514)
T 2r9r_B 370 DSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVS 426 (514)
T ss_dssp TCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHH
Confidence 445668999999999999999999999999999999999999999999999999987
No 69
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.36 E-value=3.8e-08 Score=96.04 Aligned_cols=52 Identities=10% Similarity=0.156 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
.|..++||++.|+||+||||++|.+..+++|+++++++|++++++++|.+..
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~ 96 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE 96 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999999999999999999988
No 70
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.36 E-value=2.9e-07 Score=88.24 Aligned_cols=52 Identities=8% Similarity=0.063 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchh-------HHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIG-------ETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~-------E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
.|+.|+||++.|+||+||||++|.+.. -++++++.+++|+.+++++++.+.+
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~ 259 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCE 259 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999998874 4999999999999999999999988
No 71
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.33 E-value=3.4e-07 Score=95.51 Aligned_cols=49 Identities=8% Similarity=0.251 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHh
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGN 95 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~ 95 (392)
.|+.|+||++.||||+||||++|.+..+++|+++++++|++++++.++.
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~ 99 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPF 99 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999998
No 72
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.26 E-value=4.7e-07 Score=87.96 Aligned_cols=52 Identities=10% Similarity=0.117 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhccCcCCccccCchhHH------HHHHHHHHHHHHHHHHHHHhhcc
Q 045637 47 KYFYCLWWGLQNLSSYAQSLAISTYIGET------LLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 47 kY~~slYWal~tlsTvGygd~~~~~~~E~------if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
.|+.|+||++.|+||+||||++|.+...+ +|+++.+++|+.+++++++.+++
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~ 281 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGN 281 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999888776 69999999999999999998877
No 73
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.22 E-value=2.4e-06 Score=76.19 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=61.7
Q ss_pred hhcEEEEecCC---------C---EEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcc
Q 045637 177 ERLVSSLSTLR---------A---QMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSST 243 (392)
Q Consensus 177 ~~lk~~~y~~G---------~---~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt 243 (392)
..++.+.|.+| . .+|||.+|.|+++..+ +|++. .+..++||++||+ .++ . .. +++
T Consensus 3 ~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~--~~~~~~~g~~~G~-~~l---~-~~-----~~~ 70 (202)
T 2zcw_A 3 QVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNAL--TLRLVRPGGFFGE-EAL---F-GQ-----ERI 70 (202)
T ss_dssp ---CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEE--EEEEECTTCEECT-HHH---H-TC-----CBC
T ss_pred ccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEE--EEEEecCCCEeee-hhc---C-CC-----Ccc
Confidence 44555666666 2 5899999999998653 44442 4578999999999 442 2 22 678
Q ss_pred eEEEEeeeEEEEEEcHHHHHHHHHHhHHHHHHHHHHHh
Q 045637 244 RTVKALIEVEAFVLRAEDLKFVANQFRRLHSKKLQHTF 281 (392)
Q Consensus 244 ~TV~A~t~~el~~L~~edf~~ll~~fP~l~~~~lq~~~ 281 (392)
.+++|+++|+++.| +++|. |++....++...
T Consensus 71 ~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~ 101 (202)
T 2zcw_A 71 YFAEAATDVRLEPL-PENPD------PELLKDLAQHLS 101 (202)
T ss_dssp SEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHH
T ss_pred eEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHH
Confidence 99999999999999 99986 777665554443
No 74
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=97.93 E-value=8.6e-06 Score=80.02 Aligned_cols=53 Identities=13% Similarity=0.265 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhccCcCCccccC--chhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 46 EKYFYCLWWGLQNLSSYAQSLAIST--YIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 46 ~kY~~slYWal~tlsTvGygd~~~~--~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
..+..+|||++.|+||+||||+.|+ +..-++++++.+++|+++.|+.+|-+..
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~a 144 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFV 144 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999986 6888999999999999999999998877
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=97.85 E-value=1.8e-05 Score=77.84 Aligned_cols=54 Identities=11% Similarity=0.249 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhccCcCCccccC--chhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 45 LEKYFYCLWWGLQNLSSYAQSLAIST--YIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 45 ~~kY~~slYWal~tlsTvGygd~~~~--~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
...+..+|||++.|+||+||||..|+ ++.-++++++.+++|+++.|..+|-+..
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~a 147 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMA 147 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999999999764 7899999999999999999999998877
No 76
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.02 E-value=0.00043 Score=65.70 Aligned_cols=57 Identities=7% Similarity=0.025 Sum_probs=48.8
Q ss_pred cchHHHHHHHHHHHHHHhccCcCC-ccc-cCchhH----HHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 42 SKFLEKYFYCLWWGLQNLSSYAQS-LAI-STYIGE----TLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 42 ~s~~~kY~~slYWal~tlsTvGyg-d~~-~~~~~E----~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
++.+.-+..|+||++.++||+||| |+. |.+..- +.|+++++++|.++++.++|.+.+
T Consensus 175 ~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~ 237 (285)
T 3rvy_A 175 PEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVD 237 (285)
T ss_dssp HHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778889999999999999999 885 554432 889999999999999999999988
No 77
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=95.06 E-value=0.013 Score=36.99 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHHHHHHHh
Q 045637 290 TWPACFIQAAWRHCKKRKM 308 (392)
Q Consensus 290 ~~~~~~iq~~w~~~~~r~~ 308 (392)
-|+|..||.|||+|..|+.
T Consensus 6 e~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 6 EVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5899999999999987654
No 78
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=94.56 E-value=0.017 Score=35.34 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 045637 290 TWPACFIQAAWRHCKKRK 307 (392)
Q Consensus 290 ~~~~~~iq~~w~~~~~r~ 307 (392)
-++|..||.|||+|..|+
T Consensus 6 e~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 6 EVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 579999999999998664
No 79
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=75.41 E-value=1.4 Score=38.65 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHHhHH
Q 045637 290 TWPACFIQAAWRHCKKRKMAK 310 (392)
Q Consensus 290 ~~~~~~iq~~w~~~~~r~~~~ 310 (392)
-+||..||.|||+|+.|+-.+
T Consensus 130 ~~aA~~IQra~R~~~~r~~~~ 150 (168)
T 4dck_A 130 EVSAMVIQRAFRRHLLQRSLK 150 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 469999999999998765443
No 80
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=69.57 E-value=4.1 Score=33.37 Aligned_cols=31 Identities=13% Similarity=0.365 Sum_probs=25.3
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeec
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGE 224 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE 224 (392)
++++.|++|++.+...+|.. ..+++||.|--
T Consensus 62 ~E~~~iLeG~~~lt~ddG~~------~~l~aGD~~~~ 92 (116)
T 3es4_A 62 EETFVVVEGEALYSQADADP------VKIGPGSIVSI 92 (116)
T ss_dssp EEEEEEEECCEEEEETTCCC------EEECTTEEEEE
T ss_pred cEEEEEEEeEEEEEeCCCeE------EEECCCCEEEE
Confidence 49999999999998766542 67999998853
No 81
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=64.48 E-value=5.6 Score=32.60 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=25.1
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeech
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~ 225 (392)
+++++|++|++.+...+|.. ..|++||.+--.
T Consensus 69 ~E~~~Vl~G~~~l~~~~g~~------~~l~~GD~~~ip 100 (123)
T 3bcw_A 69 IEYCHIIEGEARLVDPDGTV------HAVKAGDAFIMP 100 (123)
T ss_dssp EEEEEEEEEEEEEECTTCCE------EEEETTCEEEEC
T ss_pred cEEEEEEEEEEEEEECCCeE------EEECCCCEEEEC
Confidence 69999999999998744432 579999987633
No 82
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=63.22 E-value=4.2 Score=27.35 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=16.3
Q ss_pred chhhhHHHHHHHHHHHHHH
Q 045637 289 RTWPACFIQAAWRHCKKRK 307 (392)
Q Consensus 289 r~~~~~~iq~~w~~~~~r~ 307 (392)
++.||..||+.||-|.-||
T Consensus 27 ~~~aai~IQ~~~Rg~~~Rk 45 (48)
T 1n2d_C 27 KVNCATLLQAAYRGHSIRA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3569999999999998776
No 83
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=62.70 E-value=35 Score=26.78 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=33.1
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEE
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFV 256 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~ 256 (392)
.++++|++|++++...+ ++ ..+++||++=-. . .....+++.+++.++.
T Consensus 57 ~e~~~Vl~G~~~~~i~~--~~-----~~l~~Gd~i~ip--------~------~~~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 57 PSTIQCLEGEVEIGVDG--AQ-----RRLHQGDLLYLG--------A------GAAHDVNAITNTSLLV 104 (114)
T ss_dssp CEEEEEEESCEEEEETT--EE-----EEECTTEEEEEC--------T------TCCEEEEESSSEEEEE
T ss_pred cEEEEEEECEEEEEECC--EE-----EEECCCCEEEEC--------C------CCcEEEEeCCCcEEEE
Confidence 89999999999998632 22 579999976433 1 2345666767666544
No 84
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=62.16 E-value=11 Score=30.33 Aligned_cols=29 Identities=34% Similarity=0.693 Sum_probs=23.9
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++++|++|++.+.. + ++. ..+++||++=
T Consensus 60 ~E~~~Vl~G~~~~~~-~-g~~-----~~l~~GD~v~ 88 (119)
T 3lwc_A 60 DDVMIVLEGRLSVST-D-GET-----VTAGPGEIVY 88 (119)
T ss_dssp EEEEEEEEEEEEEEE-T-TEE-----EEECTTCEEE
T ss_pred CEEEEEEeCEEEEEE-C-CEE-----EEECCCCEEE
Confidence 899999999999987 3 332 5799999875
No 85
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=59.42 E-value=12 Score=29.65 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=22.5
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|++.+...++ .. ..+++||++=
T Consensus 61 ~e~~~Vl~G~~~~~~~~~-~~-----~~l~~Gd~~~ 90 (125)
T 3h8u_A 61 QDTWTVISGEAEYHQGNG-IV-----THLKAGDIAI 90 (125)
T ss_dssp EEEEEEEECEEEEECSTT-CE-----EEEETTEEEE
T ss_pred eEEEEEEEeEEEEEECCC-eE-----EEeCCCCEEE
Confidence 678899999999875333 22 5799999763
No 86
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=59.28 E-value=19 Score=27.62 Aligned_cols=55 Identities=20% Similarity=0.387 Sum_probs=35.8
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHHHH
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAEDL 262 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~edf 262 (392)
.++++|++|.+.+...++.. ..+++||++=-. . ......++.+++.++.+.....
T Consensus 49 ~E~~~Vl~G~~~~~~~~~~~------~~l~~Gd~~~ip--------~------~~~H~~~~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 49 DKVLFAVEGDMAVDFADGGS------MTIREGEMAVVP--------K------SVSHRPRSENGCSLVLIELSDP 103 (107)
T ss_dssp CEEEEESSSCEEEEETTSCE------EEECTTEEEEEC--------T------TCCEEEEEEEEEEEEEEECC--
T ss_pred CEEEEEEeCEEEEEECCCcE------EEECCCCEEEEC--------C------CCcEeeEeCCCeEEEEEECCCc
Confidence 89999999999998744222 579999987422 1 1233444456788877765443
No 87
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=58.69 E-value=42 Score=26.10 Aligned_cols=31 Identities=23% Similarity=0.587 Sum_probs=24.4
Q ss_pred CCEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 187 RAQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 187 G~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+.++++|++|++.+...++ .. ..|++||.+=
T Consensus 49 ~~E~~~Vl~G~~~~~i~~g-~~-----~~l~~GD~i~ 79 (101)
T 1o5u_A 49 TNETCYILEGKVEVTTEDG-KK-----YVIEKGDLVT 79 (101)
T ss_dssp SCEEEEEEEEEEEEEETTC-CE-----EEEETTCEEE
T ss_pred ceEEEEEEeCEEEEEECCC-CE-----EEECCCCEEE
Confidence 3899999999999987423 32 5799999874
No 88
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=57.54 E-value=47 Score=25.46 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=33.2
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEE
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVL 257 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L 257 (392)
.++++|++|.+.+.. +++. ..+++||++=-. . .....+++.++++++.+
T Consensus 55 ~e~~~vl~G~~~~~~--~~~~-----~~l~~Gd~~~ip--------~------~~~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 55 SQVSYVVEGEFHVNV--DGVI-----KVLTAGDSFFVP--------P------HVDHGAVCPTGGILIDT 103 (116)
T ss_dssp EEEEEEEEECEEEEE--TTEE-----EEECTTCEEEEC--------T------TCCEEEEESSCEEEEEE
T ss_pred ceEEEEEeeEEEEEE--CCEE-----EEeCCCCEEEEC--------c------CCceeeEeCCCcEEEEE
Confidence 789999999999886 2332 579999986322 1 22445566667776665
No 89
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=57.35 E-value=24 Score=26.28 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=34.6
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcH
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRA 259 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~ 259 (392)
.++++|++|.+.+...+ +. ..+++||++=-. . .....+.+.+++.++.++.
T Consensus 51 ~e~~~v~~G~~~~~~~~--~~-----~~l~~Gd~~~ip--------~------~~~H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFRD--QN-----ITLQAGEMYVIP--------K------GVEHKPMAKEECKIMIIEP 101 (102)
T ss_dssp CEEEEEEESEEEEECSS--CE-----EEEETTEEEEEC--------T------TCCBEEEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEECC--EE-----EEEcCCCEEEEC--------C------CCeEeeEcCCCCEEEEEEc
Confidence 89999999999987632 21 568999876322 1 2234555567888877753
No 90
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=57.12 E-value=50 Score=25.24 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=32.7
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEE
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVL 257 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L 257 (392)
.++++|++|.+.+... + +. ..+++||++=-. . .....+.+.++++++.+
T Consensus 61 ~e~~~vl~G~~~~~~~-~-~~-----~~l~~Gd~~~ip--------~------~~~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 61 DAMVTILSGLAEITID-Q-ET-----YRVAEGQTIVMP--------A------GIPHALYAVEAFQMLLV 109 (115)
T ss_dssp EEEEEEEESEEEEEET-T-EE-----EEEETTCEEEEC--------T------TSCEEEEESSCEEEEEE
T ss_pred cEEEEEEeCEEEEEEC-C-EE-----EEECCCCEEEEC--------C------CCCEEEEECCCceEEEE
Confidence 7999999999998763 2 22 579999987422 1 22345566666666554
No 91
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=56.39 E-value=12 Score=33.34 Aligned_cols=56 Identities=13% Similarity=-0.007 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHHHHHhccCcCCcccc-----CchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 43 KFLEKYFYCLWWGLQNLSSYAQSLAIS-----TYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 43 s~~~kY~~slYWal~tlsTvGygd~~~-----~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
+.+..+..|+||.++++|+.|++|+-. ....=..|..++++.+.++....+|-+.+
T Consensus 161 ~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~ 221 (229)
T 4dxw_A 161 SRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVD 221 (229)
T ss_dssp TTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999998611 11233566667777777887777776654
No 92
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=55.63 E-value=8.1 Score=40.93 Aligned_cols=50 Identities=12% Similarity=0.296 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhccCcCCccccCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045637 48 YFYCLWWGLQNLSSYAQSLAISTYIGETLLAVLISILNLVLLAHLIGNMQY 98 (392)
Q Consensus 48 Y~~slYWal~tlsTvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIG~i~~ 98 (392)
...++|+++.+++..| ++..|.+...+++.++++++++++.+...+++.+
T Consensus 564 ~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s 613 (823)
T 3kg2_A 564 IFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAA 613 (823)
T ss_dssp HHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578999999998888 6778999999999999999999999999999988
No 93
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=54.77 E-value=14 Score=32.11 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=28.4
Q ss_pred cEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCee
Q 045637 179 LVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 179 lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~F 222 (392)
+....+.|| .++++|++|++++...++.. ..|++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge~------~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGAK------RTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGCE------EEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCeE------EEECCCCEE
Confidence 444456666 67889999999998643332 579999998
No 94
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=53.87 E-value=15 Score=32.22 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=26.3
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
++++++++|.+.+...++|+. ....|++||+|=
T Consensus 56 dE~FyvlkG~m~i~v~d~g~~---~~v~l~eGE~f~ 88 (174)
T 1yfu_A 56 EEFFYQLRGNAYLNLWVDGRR---ERADLKEGDIFL 88 (174)
T ss_dssp CEEEEEEESCEEEEEEETTEE---EEEEECTTCEEE
T ss_pred ceEEEEEeeEEEEEEEcCCce---eeEEECCCCEEE
Confidence 899999999999987765532 236899999884
No 95
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=52.71 E-value=75 Score=24.28 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=32.4
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEE
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVL 257 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L 257 (392)
.++++|++|++.+... ++. ..+++||++=-. . .....+++.+++.++.+
T Consensus 59 ~e~~~vl~G~~~~~i~--~~~-----~~l~~Gd~i~i~--------~------~~~H~~~~~~~~~~~~i 107 (114)
T 2ozj_A 59 DTLYLILQGEAVITFD--DQK-----IDLVPEDVLMVP--------A------HKIHAIAGKGRFKMLQI 107 (114)
T ss_dssp CEEEEEEEEEEEEEET--TEE-----EEECTTCEEEEC--------T------TCCBEEEEEEEEEEEEE
T ss_pred CeEEEEEeCEEEEEEC--CEE-----EEecCCCEEEEC--------C------CCcEEEEeCCCcEEEEE
Confidence 8999999999998763 232 579999976322 1 12344555566666654
No 96
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=51.34 E-value=8 Score=22.52 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHH...
Q 045637 291 WPACFIQAAWRHCKKRK... 307 (392)
Q Consensus 291 ~~~~~iq~~w~~~~~r~... 307 (392)
.|+-.||.-||+.++||
T Consensus 7 YA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHhccC...
Confidence 37889999999988764
No 97
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=51.31 E-value=18 Score=31.30 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=23.6
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
++++||++|.|++... +.. ..|++||+|=
T Consensus 111 EE~~yVLeG~v~vtl~--g~~-----~~L~~Gds~~ 139 (166)
T 2vpv_A 111 YITFHVIQGIVEVTVC--KNK-----FLSVKGSTFQ 139 (166)
T ss_dssp EEEEEEEESEEEEEET--TEE-----EEEETTCEEE
T ss_pred eEEEEEEEeEEEEEEC--CEE-----EEEcCCCEEE
Confidence 8999999999999873 332 5799999875
No 98
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=51.30 E-value=19 Score=32.64 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=24.1
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++|+|++|.++....++.. ..+++||++=
T Consensus 153 EEiy~VLsG~~e~~v~~g~~------~~l~pGd~v~ 182 (217)
T 4b29_A 153 EELYSVVSGRALFHLRNAPD------LMLEPGQTRF 182 (217)
T ss_dssp EEEEEEEEECEEEEETTSCC------EEECTTCEEE
T ss_pred ceEEEEEeCCEEEEECCCCE------EecCCCCEEE
Confidence 99999999999998754432 5799999764
No 99
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=51.10 E-value=10 Score=26.48 Aligned_cols=23 Identities=30% Similarity=0.137 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHhHHhhc
Q 045637 291 WPACFIQAAWRHCKKRKMAKNLG 313 (392)
Q Consensus 291 ~~~~~iq~~w~~~~~r~~~~~~~ 313 (392)
.++..||+.||-+.-|+.-..++
T Consensus 29 ~aai~IQ~~~Rg~~aR~~~~~~r 51 (58)
T 2ix7_C 29 RAAITVQRYVRGYQARCYAKFLR 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777776666554443
No 100
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=51.02 E-value=52 Score=29.25 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=37.3
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEE
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVL 257 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L 257 (392)
+.+++|++|++++... +.+ ..+++||++=-. +.....++|.+++.++.+
T Consensus 58 ~~~~~Vl~G~~~~~i~--~~~-----~~l~~Gd~~~~p--------------~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 58 NRYYYCFNGNGEIFIE--NNK-----KTISNGDFLEIT--------------ANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp CEEEEEEESEEEEEES--SCE-----EEEETTEEEEEC--------------SSCCEEEEESSSEEEEEE
T ss_pred CEEEEEEeCEEEEEEC--CEE-----EEECCCCEEEEC--------------CCCCEEEEECCCcEEEEE
Confidence 8999999999999863 232 579999876422 134678889999998876
No 101
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=50.08 E-value=10 Score=26.55 Aligned_cols=24 Identities=21% Similarity=-0.028 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHHhHHhhc
Q 045637 290 TWPACFIQAAWRHCKKRKMAKNLG 313 (392)
Q Consensus 290 ~~~~~~iq~~w~~~~~r~~~~~~~ 313 (392)
..+|..||+.||.|.-||.-..++
T Consensus 5 ~~aai~IQ~~~Rg~~~Rk~~~~~r 28 (58)
T 2ix7_C 5 RAACIRIQKTIRGWLLRKRYLCMQ 28 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999997766554444
No 102
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=49.32 E-value=13 Score=28.28 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=23.7
Q ss_pred EEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeech
Q 045637 189 QMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 189 ~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~ 225 (392)
++++|++|.+++...++.. ...+++||.+=..
T Consensus 41 e~~~Vl~G~~~~~~~~g~~-----~~~l~~Gd~~~~p 72 (97)
T 2fqp_A 41 VVVPMTTGPLLLETPEGSV-----TSQLTRGVSYTRP 72 (97)
T ss_dssp EEEESSCEEEEEEETTEEE-----EEEECTTCCEEEC
T ss_pred EEEEEeecEEEEEeCCCCE-----EEEEcCCCEEEeC
Confidence 5999999999998744312 2579999987533
No 103
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=48.22 E-value=23 Score=26.29 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=22.3
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++++|++|.+.+... ++ ...+++||++=
T Consensus 50 ~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 50 DKVYYALEGEVVVRVG--EE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred cEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 5799999999998763 22 25799999763
No 104
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=47.62 E-value=48 Score=27.09 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=24.6
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeech
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~ 225 (392)
+++++|++|++.+... ++. ..+++||.+--.
T Consensus 76 ~E~~~VLeG~~~l~~~--g~~-----~~l~~GD~i~~p 106 (133)
T 2pyt_A 76 DEIDMVLEGELHVRHE--GET-----MIAKAGDVMFIP 106 (133)
T ss_dssp EEEEEEEEEEEEEEET--TEE-----EEEETTCEEEEC
T ss_pred CEEEEEEECEEEEEEC--CEE-----EEECCCcEEEEC
Confidence 8999999999999863 332 579999987533
No 105
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=45.93 E-value=21 Score=35.33 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=29.7
Q ss_pred EEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 180 VSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 180 k~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
....+.|| .++|||++|+-..+..+|.+ ..+++||++=
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~~------~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHK------VELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEE------EEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECCEE------EEEcCCCEEE
Confidence 66688888 89999999997665555543 5799999874
No 106
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=45.24 E-value=22 Score=32.66 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=24.9
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++..|++|.+.+...+|.. ..+++||.|-
T Consensus 187 ~E~~~ILeG~v~lt~~~G~~------~~~~aGD~~~ 216 (238)
T 3myx_A 187 HELMNLIEGRVVLSLENGSS------LTVNTGDTVF 216 (238)
T ss_dssp CEEEEEEECCEEEEETTSCE------EEECTTCEEE
T ss_pred CEEEEEEEeEEEEEeCCCCE------EEECCCCEEE
Confidence 89999999999998765432 6799999875
No 107
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=45.14 E-value=28 Score=27.28 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=23.0
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|.+.+...+ +. ..+++||++=
T Consensus 62 ~e~~~vl~G~~~~~~~~--~~-----~~l~~Gd~~~ 90 (126)
T 4e2g_A 62 EQAGVMLEGTLELTIGE--ET-----RVLRPGMAYT 90 (126)
T ss_dssp EEEEEEEEECEEEEETT--EE-----EEECTTEEEE
T ss_pred ceEEEEEEeEEEEEECC--EE-----EEeCCCCEEE
Confidence 89999999999998632 22 5799999864
No 108
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=44.80 E-value=56 Score=27.66 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=23.6
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++++|++|++++.. ++++ ..+++||.+=
T Consensus 85 eE~~yVLeG~~~l~i--~g~~-----~~l~~GD~i~ 113 (151)
T 4axo_A 85 DEIDYVIDGTLDIII--DGRK-----VSASSGELIF 113 (151)
T ss_dssp EEEEEEEEEEEEEEE--TTEE-----EEEETTCEEE
T ss_pred cEEEEEEEeEEEEEE--CCEE-----EEEcCCCEEE
Confidence 899999999999986 3332 6799999864
No 109
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=43.58 E-value=46 Score=28.22 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=23.0
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|++.+...+ + ...+++||++=
T Consensus 77 ~E~~~Vl~G~~~~~i~~--~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 77 THVVMVVRGHAEVVLDD--R-----VEPLTPLDCVY 105 (167)
T ss_dssp CEEEEEEESEEEEEETT--E-----EEEECTTCEEE
T ss_pred cEEEEEEeCEEEEEECC--E-----EEEECCCCEEE
Confidence 89999999999988632 2 25799999863
No 110
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=42.50 E-value=17 Score=24.19 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHhHHhhc
Q 045637 292 PACFIQAAWRHCKKRKMAKNLG 313 (392)
Q Consensus 292 ~~~~iq~~w~~~~~r~~~~~~~ 313 (392)
++..||+.||.+.-|+.-+.++
T Consensus 5 a~i~iQ~~~Rg~l~R~~~~~~~ 26 (48)
T 1n2d_C 5 AIKYLQNNIKGFIIRQRVNDEM 26 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999998877665443
No 111
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=42.49 E-value=25 Score=28.05 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=23.6
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|.+.+...++ +. ..+++||++=
T Consensus 65 ~E~~~vl~G~~~~~~~~~-~~-----~~l~~Gd~~~ 94 (134)
T 2o8q_A 65 FQLFYVLRGWVEFEYEDI-GA-----VMLEAGGSAF 94 (134)
T ss_dssp CEEEEEEESEEEEEETTT-EE-----EEEETTCEEE
T ss_pred cEEEEEEeCEEEEEECCc-EE-----EEecCCCEEE
Confidence 799999999999987442 22 5799999763
No 112
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=41.80 E-value=42 Score=25.93 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=22.5
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeE-EeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSI-TLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~-~L~~Gd~FG 223 (392)
.++++|++|.+.+...+ +. . .+++||++=
T Consensus 48 ~e~~~Vl~G~~~~~i~~--~~-----~~~l~~Gd~i~ 77 (117)
T 2b8m_A 48 YVHLIIIKGEMTLTLED--QE-----PHNYKEGNIVY 77 (117)
T ss_dssp CEEEEEEESEEEEEETT--SC-----CEEEETTCEEE
T ss_pred cEEEEEEeCEEEEEECC--EE-----EEEeCCCCEEE
Confidence 88999999999988633 22 3 689999763
No 113
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=41.08 E-value=45 Score=27.72 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=24.4
Q ss_pred CEEEEEEeceEEEEecCCCce--eeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRT--GFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~--~~~~~~~L~~Gd~FG 223 (392)
.++++|++|.+.+...+++.+ +-.....+++||++=
T Consensus 62 ~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 62 EEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp CEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred CeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 789999999999987552210 000125799999863
No 114
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=39.99 E-value=26 Score=29.58 Aligned_cols=58 Identities=5% Similarity=0.049 Sum_probs=36.9
Q ss_pred CEEEEEEeceEEEEecCCC--ceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcHH
Q 045637 188 AQMLFIISGRLESSTTNGG--RTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRAE 260 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg--~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~e 260 (392)
|++|+|++|++.+...++. ..+ .....+++|++|== |++ --.+-+|..+|.++.+...
T Consensus 51 DE~Fivl~G~l~i~~rd~~~~~~~-d~~V~l~~Ge~yvV--------PkG------veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 51 DEQFILSAGKAILITAEKENDKFN-IELTLMEKGKVYNV--------PAE------CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp CEEEEEEESCEEEEEEEEETTEEE-EEEEECCTTCCEEE--------CTT------CEEEEEECTTCEEEEEEES
T ss_pred CeEEEEEecEEEEEEecCcCCCCc-cceEEecCCCEEEe--------CCC------ccCcccCCCceEEEEEEeC
Confidence 9999999999999865321 101 12367999988742 222 2344455677777777544
No 115
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=39.24 E-value=36 Score=29.10 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=24.7
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|++++...+++.. ....|++||++=
T Consensus 141 ~E~~~Vl~G~~~~~~~~~~~~---~~~~l~~GD~~~ 173 (198)
T 2bnm_A 141 NEFLFVLEGEIHMKWGDKENP---KEALLPTGASMF 173 (198)
T ss_dssp CEEEEEEESCEEEEESCTTSC---EEEEECTTCEEE
T ss_pred eEEEEEEeeeEEEEECCcCCc---ccEEECCCCEEE
Confidence 799999999999987443221 126799999874
No 116
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=39.18 E-value=33 Score=30.04 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=26.1
Q ss_pred CEEEEEEeceEEEEecCCCce-eeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRT-GFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~-~~~~~~~L~~Gd~FG 223 (392)
++++++++|.+.+...++|.. .-+....|++||+|=
T Consensus 55 eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfl 91 (176)
T 1zvf_A 55 PEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYL 91 (176)
T ss_dssp CEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEE
T ss_pred ceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEE
Confidence 899999999999987764400 002236899999884
No 117
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=39.08 E-value=12 Score=28.97 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=28.8
Q ss_pred hcEEEEecCC-----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCee
Q 045637 178 RLVSSLSTLR-----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 178 ~lk~~~y~~G-----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~F 222 (392)
+++...+.|| ...|+|.+|.+.+...++... ...+++|+.+
T Consensus 18 rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~----~~~l~~G~~~ 69 (98)
T 3lag_A 18 RVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRS----LAQLKTGRSY 69 (98)
T ss_dssp EEEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEE----CCCBCTTCCE
T ss_pred EEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceE----EEEecCCcEE
Confidence 4566788899 578889999999987655432 2457888765
No 118
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=37.94 E-value=49 Score=29.86 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=31.9
Q ss_pred hhhcEEEEecCC-----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeech
Q 045637 176 CERLVSSLSTLR-----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 176 ~~~lk~~~y~~G-----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~ 225 (392)
...+....+.|| ++.++|++|++.+.. +++. ..+++||++--.
T Consensus 164 ~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~~-----~~l~~GD~~~~~ 217 (246)
T 1sfn_A 164 DFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EENY-----YPVTAGDIIWMG 217 (246)
T ss_dssp SEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTEE-----EEEETTCEEEEC
T ss_pred CeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCEE-----EEcCCCCEEEEC
Confidence 344566677888 799999999999886 3332 579999986533
No 119
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=37.82 E-value=39 Score=21.64 Aligned_cols=9 Identities=33% Similarity=0.431 Sum_probs=6.8
Q ss_pred HHHHHHHHH
Q 045637 50 YCLWWGLQN 58 (392)
Q Consensus 50 ~slYWal~t 58 (392)
.|+|||+..
T Consensus 15 TSLy~GLLl 23 (37)
T 3arc_L 15 TSLYLGLLL 23 (37)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 588998764
No 120
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=37.28 E-value=38 Score=28.10 Aligned_cols=28 Identities=21% Similarity=0.561 Sum_probs=22.9
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~F 222 (392)
.++++|++|++.+... +++ ..+++||++
T Consensus 69 ~E~~~Vl~G~~~~~~~--~~~-----~~l~~Gd~i 96 (162)
T 3l2h_A 69 EEAVYVLSGKGTLTME--NDQ-----YPIAPGDFV 96 (162)
T ss_dssp CEEEEEEESCEEEEET--TEE-----EEECTTCEE
T ss_pred CEEEEEEEEEEEEEEC--CEE-----EEeCCCCEE
Confidence 8999999999999863 222 579999987
No 121
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=36.94 E-value=43 Score=28.73 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=23.5
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++++|++|++.+...+.+.. ....+++||++=
T Consensus 62 ~E~~yVl~G~~~v~v~~~~~~---~~~~l~~GDv~~ 94 (178)
T 1dgw_A 62 DLLVLVLEGQAILVLVNPDGR---DTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEEEESEEEEEEEETTEE---EEEEEETTEEEE
T ss_pred CEEEEEEeEEEEEEEEeCCCc---EEEEECCCCEEE
Confidence 899999999998875322111 135799999864
No 122
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=36.70 E-value=98 Score=26.21 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=22.7
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|++++... ++ ...+++||++=
T Consensus 74 ~E~~~Vl~G~~~~~v~--g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 74 AHGVMILKGRGHAMVG--RA-----VSAVAPYDLVT 102 (166)
T ss_dssp CEEEEEEEECEEEEET--TE-----EEEECTTCEEE
T ss_pred cEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 8899999999998762 22 25799999763
No 123
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=36.66 E-value=36 Score=25.70 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=22.7
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|.+.+... ++. ..+++||++=
T Consensus 45 ~e~~~vl~G~~~~~~~--~~~-----~~l~~Gd~~~ 73 (113)
T 2gu9_A 45 DQWLFVVDGAGEAIVD--GHT-----QALQAGSLIA 73 (113)
T ss_dssp EEEEEEEECCEEEEET--TEE-----EEECTTEEEE
T ss_pred cEEEEEEeCEEEEEEC--CEE-----EEeCCCCEEE
Confidence 7899999999998863 222 5799999763
No 124
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=36.59 E-value=28 Score=27.31 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=23.6
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++++|++|.+++...++.. ...|++||++=
T Consensus 54 ~E~~~Vl~G~~~l~~~~~~~-----~~~l~~Gd~i~ 84 (112)
T 2opk_A 54 DEWVMVVSGSAGIECEGDTA-----PRVMRPGDWLH 84 (112)
T ss_dssp EEEEEEEESCEEEEETTCSS-----CEEECTTEEEE
T ss_pred cEEEEEEeCeEEEEECCEEE-----EEEECCCCEEE
Confidence 89999999999998744321 03699999764
No 125
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=35.85 E-value=58 Score=25.47 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=22.9
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|.+.+... ++ ...+++||++=
T Consensus 55 ~Ei~~v~~G~~~~~i~--~~-----~~~l~~Gd~~~ 83 (128)
T 4i4a_A 55 YELFIVIQGNAIIRIN--DE-----DFPVTKGDLII 83 (128)
T ss_dssp EEEEEEEESEEEEEET--TE-----EEEEETTCEEE
T ss_pred eEEEEEEeCEEEEEEC--CE-----EEEECCCcEEE
Confidence 8999999999999873 22 25799999764
No 126
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=35.62 E-value=46 Score=28.02 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=22.4
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~F 222 (392)
.++++|++|++++... ++ ...+++||++
T Consensus 65 ~E~~~Vl~G~~~v~v~--g~-----~~~l~~Gd~i 92 (156)
T 3kgz_A 65 VHAVMIHRGHGQCLVG--ET-----ISDVAQGDLV 92 (156)
T ss_dssp CEEEEEEEEEEEEEET--TE-----EEEEETTCEE
T ss_pred cEEEEEEeCEEEEEEC--CE-----EEEeCCCCEE
Confidence 8899999999999862 22 2579999976
No 127
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=35.51 E-value=64 Score=28.04 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=24.3
Q ss_pred CEEEEEEeceEEEEecCC----CceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNG----GRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~g----g~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|++.+...++ ++ .....+++||++=
T Consensus 94 ~E~~~Vl~G~~~v~~~~~~~~~~~---~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 94 TEIGMVMKGELLVGILGSLDSGNK---LYSRVVRAGETFV 130 (201)
T ss_dssp CEEEEEEESEEEEEEECCGGGTTC---EEEEEEETTCEEE
T ss_pred CEEEEEEeCEEEEEEEcCCCCCCe---EEEEEECCCCEEE
Confidence 799999999999876433 22 1136799999874
No 128
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=35.43 E-value=90 Score=23.31 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=22.0
Q ss_pred CEE-EEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQM-LFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~m-yfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++ ++|++|.+.+...++.. ..+++||++=
T Consensus 55 ~e~~~~vl~G~~~~~~~~~~~------~~l~~Gd~~~ 85 (110)
T 2q30_A 55 GELNIVVLEGEGEFVGDGDAV------IPAPRGAVLV 85 (110)
T ss_dssp CEEEEEEEESCEEEECGGGCE------EEECTTEEEE
T ss_pred ccEEEEEEeCEEEEEeCCCEE------EEECCCCEEE
Confidence 366 89999999988642222 5799999764
No 129
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=35.27 E-value=45 Score=26.60 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=22.2
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|++.+...-+++. ..+++||++=
T Consensus 60 ~e~~~vl~G~~~~~~~~~~~~-----~~l~~Gd~~~ 90 (145)
T 3ht1_A 60 EHEIYVLEGSMGLVLPDQGRT-----EEVGPGEAIF 90 (145)
T ss_dssp CEEEEEEEECEEEEEGGGTEE-----EEECTTCEEE
T ss_pred ceEEEEEEeEEEEEEeECCEE-----EEECCCCEEE
Confidence 677889999999982122332 5799999763
No 130
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=35.27 E-value=77 Score=29.50 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=37.6
Q ss_pred cccCccccCCCChhHHHHHHhHhHhHhhccCCCCHHHHHHhCChhhH
Q 045637 100 PICNPLLHRQIPQNLRELVRQFVPYKWLATRGVDEESILHALPTDLR 146 (392)
Q Consensus 100 ~i~~~M~~r~lp~~Lr~RVr~y~~y~w~~~~g~dee~ll~~LP~~Lr 146 (392)
.=..|..-..+|+.+++-+..-.+-.+-...|+|...|++.+=..++
T Consensus 72 ~~r~~v~l~~Ip~~l~~AvIA~ED~rFy~H~GvD~~gi~RA~~~n~~ 118 (263)
T 3vmt_A 72 NKSSFVSADNMPEYVKGAFISMEDERFYNHHGFDLKGTTRALFSTIS 118 (263)
T ss_dssp GSTTCCCGGGSCHHHHHHHHHHHCTTTTTSSSCCHHHHHTTTTCC--
T ss_pred ccCCCCCHHHcCHHHHHHHHHHHcchhhhCCCCCHHHHHHHHHHHHh
Confidence 34568888899999999998888877777899999999888765554
No 131
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=35.22 E-value=28 Score=31.93 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=23.8
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++.+|++|++.+.. ++.. ..+++||.+-
T Consensus 66 dE~~~VleG~~~lt~--~g~~-----~~~~~Gd~~~ 94 (238)
T 3myx_A 66 TEMLVMHRGSVTLTS--GTDS-----VTLSTGESAV 94 (238)
T ss_dssp EEEEEEEESEEEEEE--TTEE-----EEEETTCEEE
T ss_pred cEEEEEEEeEEEEEC--CCeE-----EEEcCCCEEE
Confidence 999999999999987 3442 5799999764
No 132
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=34.92 E-value=43 Score=28.17 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=23.1
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++++|++|++++...+ + ...|++||++=
T Consensus 66 eE~~~Vl~G~~~~~~~~--~-----~~~l~~GD~i~ 94 (163)
T 3i7d_A 66 DEFVMVTEGALVLVDDQ--G-----EHPMVPGDCAA 94 (163)
T ss_dssp CEEEEEEESCEEEEETT--E-----EEEECTTCEEE
T ss_pred cEEEEEEECEEEEEECC--E-----EEEeCCCCEEE
Confidence 69999999999998633 2 25799999864
No 133
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=33.47 E-value=43 Score=26.57 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=22.6
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|.+.+...+ +. ..+++||++=
T Consensus 69 ~e~~~Vl~G~~~~~i~~--~~-----~~l~~Gd~i~ 97 (126)
T 1vj2_A 69 EHEIFVLKGKLTVLKEQ--GE-----ETVEEGFYIF 97 (126)
T ss_dssp CEEEEEEESEEEEECSS--CE-----EEEETTEEEE
T ss_pred cEEEEEEEeEEEEEECC--EE-----EEECCCCEEE
Confidence 89999999999988632 22 5689998763
No 134
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=33.02 E-value=50 Score=32.51 Aligned_cols=39 Identities=10% Similarity=0.042 Sum_probs=29.0
Q ss_pred EEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeech
Q 045637 180 VSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 180 k~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~ 225 (392)
....+.|| +++|+|++|+..+.. +| ++ ..+++||+|=-.
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V-~g-e~-----~~~~~GD~~~iP 345 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV-GG-KR-----FDWSEHDIFCVP 345 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEE-TT-EE-----EEECTTCEEEEC
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE-CC-EE-----EEEeCCCEEEEC
Confidence 55577888 889999999985554 33 32 679999998544
No 135
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=32.42 E-value=76 Score=26.01 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=22.8
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|.+.+...+.. ...+++||++=
T Consensus 69 ~E~~~Vl~G~~~~~~~~~~------~~~l~~Gd~i~ 98 (147)
T 2f4p_A 69 GQILIVTRGKGFYQERGKP------ARILKKGDVVE 98 (147)
T ss_dssp CEEEEEEEEEEEEEETTSC------CEEEETTCEEE
T ss_pred ceEEEEEeCEEEEEECCEE------EEEECCCCEEE
Confidence 8999999999998864321 14689999774
No 136
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=32.14 E-value=92 Score=28.90 Aligned_cols=52 Identities=10% Similarity=0.249 Sum_probs=34.3
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEEeeeEEEEEEcH
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKALIEVEAFVLRA 259 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A~t~~el~~L~~ 259 (392)
++++||++|++++...+| ++ ..|++||++=-. + ....+++..++++++.+.+
T Consensus 91 EEfiyVleG~l~l~l~~g-~~-----~~L~~Gds~y~p---------~-----~~~H~~~N~~~Ar~l~V~k 142 (266)
T 4e2q_A 91 ERLIFVVEGAVTLTNTSS-SS-----KKLTVDSYAYLP---------P-----NFHHSLDCVESATLVVFER 142 (266)
T ss_dssp EEEEEEEEECEEEEC--C-CC-----EEECTTEEEEEC---------T-----TCCCEEEESSCEEEEEEEE
T ss_pred eEEEEEEEEEEEEEECCC-cE-----EEEcCCCEEEEC---------C-----CCCEEEEeCCCEEEEEEEe
Confidence 899999999999986423 32 579999987433 1 2233444456777777743
No 137
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=31.15 E-value=46 Score=26.73 Aligned_cols=28 Identities=21% Similarity=0.609 Sum_probs=22.1
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~F 222 (392)
.++++|++|.+.+... ++. ..+++||++
T Consensus 79 ~E~~~Vl~G~~~~~i~--~~~-----~~l~~Gd~i 106 (133)
T 1o4t_A 79 FEIYYILLGEGVFHDN--GKD-----VPIKAGDVC 106 (133)
T ss_dssp EEEEEEEESEEEEEET--TEE-----EEEETTEEE
T ss_pred cEEEEEEeCEEEEEEC--CEE-----EEeCCCcEE
Confidence 6899999999998763 232 579999976
No 138
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=30.76 E-value=71 Score=27.14 Aligned_cols=29 Identities=10% Similarity=0.220 Sum_probs=22.9
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|++.+... +.. ..|++||++=
T Consensus 127 ~E~~~Vl~G~~~~~~~--~~~-----~~l~~GD~i~ 155 (192)
T 1y9q_A 127 IEYIHVLEGIMKVFFD--EQW-----HELQQGEHIR 155 (192)
T ss_dssp EEEEEEEESCEEEEET--TEE-----EEECTTCEEE
T ss_pred EEEEEEEEeEEEEEEC--CEE-----EEeCCCCEEE
Confidence 6999999999998762 332 5799999763
No 139
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=30.65 E-value=38 Score=33.14 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=27.8
Q ss_pred EEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 180 VSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 180 k~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
....+.|| +++|||++|+-..+..+|.+ ..+++||++=
T Consensus 106 ~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG~~------~~~~~GD~v~ 153 (368)
T 3nw4_A 106 AIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDP------VRMSRGDLLL 153 (368)
T ss_dssp EEEEECTTCEEEEEEESSCEEEECSSCEEEEEEETTEE------EEEETTCEEE
T ss_pred EEEEECCCCccCceecccceEEEEEecceEEEEECCEE------EEEeCCCEEE
Confidence 34467777 99999999997534445543 6799999874
No 140
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=30.03 E-value=39 Score=32.55 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=23.2
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
.++++|++|+..+...++.. ..+++||+|=
T Consensus 121 ~e~~yVl~G~g~~t~v~g~~------~~l~~GD~~~ 150 (354)
T 2d40_A 121 SALRFIVEGKGAFTAVDGER------TPMNEGDFIL 150 (354)
T ss_dssp CEEEEEEECSSCEEEETTEE------EECCTTCEEE
T ss_pred ceEEEEEEEEEEEEEECCEE------EEEcCCCEEE
Confidence 89999999998774444422 5799999874
No 141
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=29.80 E-value=38 Score=20.15 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHhH
Q 045637 291 WPACFIQAAWRHCKKRKMA 309 (392)
Q Consensus 291 ~~~~~iq~~w~~~~~r~~~ 309 (392)
.||-.||.-||..+.||..
T Consensus 3 YAa~mI~e~yrq~K~~r~q 21 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQR 21 (26)
T ss_pred hHHHHHHHHHHHHHhhhhh
Confidence 4899999999999888753
No 142
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=29.50 E-value=65 Score=29.77 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=30.7
Q ss_pred hhcEEEEecCC-----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 177 ERLVSSLSTLR-----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 177 ~~lk~~~y~~G-----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
..+....+.|| ++.++|++|+..+.. +++ ...+++||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~--~~~-----~~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL--NQD-----WVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 45666778888 688999999999875 333 26799999863
No 143
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=28.59 E-value=70 Score=26.08 Aligned_cols=34 Identities=12% Similarity=-0.115 Sum_probs=22.6
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~F 222 (392)
+++++|++|.+.+...+..... .....+++||++
T Consensus 65 ~E~~~Vl~G~~~~~i~~~~~~~-~~~~~l~~Gd~i 98 (148)
T 2oa2_A 65 DQFLRVEEGRGLVQMGHRQDNL-HFQEEVFDDYAI 98 (148)
T ss_dssp EEEEEEEESEEEEEEESBTTBC-CEEEEEETTCEE
T ss_pred cEEEEEEeCEEEEEECCccccc-eeeEEECCCCEE
Confidence 5999999999999864432100 001468999875
No 144
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=28.01 E-value=73 Score=28.82 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=23.0
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++++|++|++++... ++. ..+++||++=
T Consensus 201 ~E~~~Vl~G~~~~~i~--~~~-----~~l~~GD~i~ 229 (261)
T 1rc6_A 201 EHGAYILSGQGVYNLD--NNW-----IPVKKGDYIF 229 (261)
T ss_dssp CEEEEEEESEEEEESS--SCE-----EEEETTCEEE
T ss_pred eEEEEEEEeEEEEEEC--CEE-----EEeCCCCEEE
Confidence 7899999999998863 222 5799999864
No 145
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=27.69 E-value=65 Score=28.87 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=27.2
Q ss_pred cEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCee
Q 045637 179 LVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 179 lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~F 222 (392)
+....+.|| .++++|++|.+++.. + +.. ..+++||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~-~-~~~-----~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV-G-DVT-----RKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE-T-TEE-----EEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE-C-CEE-----EEECCCCEE
Confidence 444456777 889999999999987 3 332 579999843
No 146
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=27.67 E-value=23 Score=27.11 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHH
Q 045637 291 WPACFIQAAWRHCKKRK 307 (392)
Q Consensus 291 ~~~~~iq~~w~~~~~r~ 307 (392)
.|+-.||.-||++++||
T Consensus 64 YA~llI~d~~r~~k~r~ 80 (81)
T 3g43_E 64 YATFLIQEYFRKFKKRE 80 (81)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 48999999999999886
No 147
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=27.49 E-value=1.2e+02 Score=30.90 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=33.3
Q ss_pred hHHHHhhhcEEEEecCC-----------CEEEEEEeceEEEEecCC-CceeeeeeEEeCCCCee
Q 045637 171 LPDALCERLVSSLSTLR-----------AQMLFIISGRLESSTTNG-GRTGFFNSITLRPGDFC 222 (392)
Q Consensus 171 ~L~~L~~~lk~~~y~~G-----------~~myfI~~G~V~v~~~~g-g~~~~~~~~~L~~Gd~F 222 (392)
.|..|--.+....+.|| .++.+|++|.+.+...+. +.. ++ ...|++||+|
T Consensus 352 ~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~-~f-~~~l~~GDV~ 413 (496)
T 3ksc_A 352 VLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNT-VF-DGELEAGRAL 413 (496)
T ss_dssp THHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCE-EE-EEEEETTCEE
T ss_pred cccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcE-EE-EEEecCCeEE
Confidence 45555444555555555 899999999998865432 232 22 3579999987
No 148
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=27.34 E-value=60 Score=21.02 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 045637 75 TLLAVLISILNLVLLAHLIGN 95 (392)
Q Consensus 75 ~if~i~i~i~G~~lfa~lIG~ 95 (392)
.++++++.++++++|+++-+.
T Consensus 7 ~Vy~vV~ffvsLFiFGfLsnD 27 (38)
T 3arc_I 7 TVYIVVTFFVLLFVFGFLSGD 27 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHTTG
T ss_pred eehhHHHHHHHHHHccccCCC
Confidence 467888889999999987554
No 149
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=27.01 E-value=9.1 Score=22.26 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHH
Q 045637 291 WPACFIQAAWRHCKKRK 307 (392)
Q Consensus 291 ~~~~~iq~~w~~~~~r~ 307 (392)
.|+-.||.-||+.++||
T Consensus 6 YAallI~d~~r~~k~~~ 22 (23)
T 3dve_B 6 YAALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 47889999999876654
No 150
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=26.38 E-value=74 Score=31.64 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=31.5
Q ss_pred hhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 177 ERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 177 ~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
..+....+.|| +++++|++|++.+...+.+.. ....+++||++=
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~---~~~~l~~GDv~~ 114 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSR---DSYILEQGHAQK 114 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCE---EEEEEETTEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCC---EEEEeCCCCEEE
Confidence 45666777777 899999999998875432221 236799999873
No 151
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=26.38 E-value=1.2e+02 Score=30.41 Aligned_cols=51 Identities=10% Similarity=0.136 Sum_probs=34.1
Q ss_pred hHHHHhhhcEEEEecCC-----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCeee
Q 045637 171 LPDALCERLVSSLSTLR-----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 171 ~L~~L~~~lk~~~y~~G-----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~FG 223 (392)
.|..+--.+....+.|| .++++|++|.+.+.-.+ .+.. .+ ...+++||+|=
T Consensus 316 ~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~-~~-~~~l~~GDv~v 378 (459)
T 2e9q_A 316 ILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQS-VF-DGEVREGQVLM 378 (459)
T ss_dssp THHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCE-EE-EEEEETTCEEE
T ss_pred cccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCE-EE-eeEEeCCcEEE
Confidence 45555555556666666 89999999998877543 2232 22 25799999873
No 152
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=26.23 E-value=77 Score=31.27 Aligned_cols=44 Identities=32% Similarity=0.415 Sum_probs=30.8
Q ss_pred hhcEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 177 ERLVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 177 ~~lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
..+....+.|| +++++|++|++.+...+.+.. ....+++||++=
T Consensus 49 ~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~---~~~~l~~GDv~~ 102 (416)
T 1uij_A 49 YRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDR---DSYNLHPGDAQR 102 (416)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCE---EEEEECTTEEEE
T ss_pred EEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCC---eEEEecCCCEEE
Confidence 34556667777 899999999999865332221 136799999873
No 153
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=25.85 E-value=1.2e+02 Score=30.65 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=34.1
Q ss_pred hHHHHhhhcEEEEecCC-----------CEEEEEEeceEEEEecCC-CceeeeeeEEeCCCCeee
Q 045637 171 LPDALCERLVSSLSTLR-----------AQMLFIISGRLESSTTNG-GRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 171 ~L~~L~~~lk~~~y~~G-----------~~myfI~~G~V~v~~~~g-g~~~~~~~~~L~~Gd~FG 223 (392)
.+..+-..+....+.|| +++++|++|.+.+...+. +...+ ...+++||+|=
T Consensus 361 ~L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~--~~~l~~GDv~v 423 (493)
T 2d5f_A 361 ALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVF--DGELRRGQLLV 423 (493)
T ss_dssp THHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred cccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEE--eEEEcCCCEEE
Confidence 35555455666666777 799999999998875432 22211 25699999873
No 154
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=25.54 E-value=50 Score=19.57 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHhHHh
Q 045637 292 PACFIQAAWRHCKKRKMAKN 311 (392)
Q Consensus 292 ~~~~iq~~w~~~~~r~~~~~ 311 (392)
|.-.||.-.|+.++||.+..
T Consensus 4 at~LIqdyfRkfkkrke~~~ 23 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQXX 23 (26)
T ss_pred hhhhHHHHHHHHHHhHHhhc
Confidence 56689999999998886643
No 155
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=25.13 E-value=1.3e+02 Score=30.52 Aligned_cols=50 Identities=12% Similarity=0.154 Sum_probs=33.4
Q ss_pred hHHHHhhhcEEEEecCC-----------CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCee
Q 045637 171 LPDALCERLVSSLSTLR-----------AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 171 ~L~~L~~~lk~~~y~~G-----------~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~F 222 (392)
.+..+-..+....+.|| .++++|++|.+.+...+ .|...+ ...+++||+|
T Consensus 366 ~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~--~~~l~~GDv~ 427 (510)
T 3c3v_A 366 ILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVY--DEELQEGHVL 427 (510)
T ss_dssp THHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred ccccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEE--eEEEcCCcEE
Confidence 35555555566666666 89999999999886533 222211 2569999987
No 156
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=25.06 E-value=1.2e+02 Score=30.53 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=34.4
Q ss_pred hHHHHhhhcEEEEecCC-----------CEEEEEEeceEEEEecCC-CceeeeeeEEeCCCCeee
Q 045637 171 LPDALCERLVSSLSTLR-----------AQMLFIISGRLESSTTNG-GRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 171 ~L~~L~~~lk~~~y~~G-----------~~myfI~~G~V~v~~~~g-g~~~~~~~~~L~~Gd~FG 223 (392)
.|..+--.+....+.|| .++.+|++|.+.+...+. +... ....|++||+|=
T Consensus 317 ~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~--f~~~l~~GDV~v 379 (466)
T 3kgl_A 317 ILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRV--FDGQVSQGQLLS 379 (466)
T ss_dssp THHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEE--EEEEEETTCEEE
T ss_pred ccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEE--EEeEecCCcEEE
Confidence 45555555555556666 899999999998865432 2322 236899999873
No 157
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=24.95 E-value=53 Score=29.78 Aligned_cols=31 Identities=26% Similarity=0.539 Sum_probs=24.0
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeech
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~ 225 (392)
+++++|++|++++.. ++++ ..|++||++=-.
T Consensus 82 ee~~~Vl~G~l~~~~--~~~~-----~~L~~Gd~~~~~ 112 (261)
T 1rc6_A 82 ETFLYVISGNITAKA--EGKT-----FALSEGGYLYCP 112 (261)
T ss_dssp EEEEEEEESEEEEEE--TTEE-----EEEETTEEEEEC
T ss_pred eEEEEEEEeEEEEEE--CCEE-----EEECCCCEEEEC
Confidence 689999999999986 3332 679999987533
No 158
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=24.91 E-value=71 Score=30.06 Aligned_cols=33 Identities=12% Similarity=0.410 Sum_probs=25.8
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++|++++|.+.+...++|+ +.-..|++|++|=
T Consensus 52 dE~FyqlkG~m~l~~~d~g~---~~~V~i~eGemfl 84 (286)
T 2qnk_A 52 EEVFYQLEGDMVLRVLEQGK---HRDVVIRQGEIFL 84 (286)
T ss_dssp CEEEEEEESCEEEEEEETTE---EEEEEECTTEEEE
T ss_pred CeEEEEEeCeEEEEEEeCCc---eeeEEECCCeEEE
Confidence 89999999999998766443 2236799998874
No 159
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=24.24 E-value=1.3e+02 Score=30.42 Aligned_cols=81 Identities=10% Similarity=0.009 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHHHHhccCcCCcc--ccCchhHHHHHHHHHHHHHH-----------HHHHHHHhhcc--c-------c
Q 045637 43 KFLEKYFYCLWWGLQNLSSYAQSLA--ISTYIGETLLAVLISILNLV-----------LLAHLIGNMQY--R-------P 100 (392)
Q Consensus 43 s~~~kY~~slYWal~tlsTvGygd~--~~~~~~E~if~i~i~i~G~~-----------lfa~lIG~i~~--~-------~ 100 (392)
++.++...+++=++...||.|++.. ..-...-.++.++.|++|.. =+..++-.+.. + .
T Consensus 302 ~~~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv~r~~il~~~~~~el~~~~~P~~v 381 (494)
T 3pjz_A 302 SPYDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKVIRILLLTLQGARELKRLVHPRAV 381 (494)
T ss_dssp SHHHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCHHHHHHHHHHHHHHHHHHHCSSSC
T ss_pred CHHHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhHHHHHHHHHHHHHHHhcccCCCcc
Confidence 5788889999999999999998854 33333444555666666631 12333322222 1 1
Q ss_pred ccCccccCCCChhHHHHHHhHhH
Q 045637 101 ICNPLLHRQIPQNLRELVRQFVP 123 (392)
Q Consensus 101 i~~~M~~r~lp~~Lr~RVr~y~~ 123 (392)
..--+.+|.+|++..+++-.++-
T Consensus 382 ~~v~~~~r~i~~~~v~~~~~~~~ 404 (494)
T 3pjz_A 382 YTIKVGGSALPQRVVDAVWGFFS 404 (494)
T ss_dssp CCCCSSSCCCTTTHHHHHHHHHH
T ss_pred eeeeECCEECCHHHHHHHHHHHH
Confidence 22345788999999999887754
No 160
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=23.91 E-value=1.1e+02 Score=26.45 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=24.0
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~F 222 (392)
.++++|++|++.+...+...+ .....+++||++
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~--~~~~~l~~GD~v 129 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGD--AKWISMEPGTVV 129 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCC--EEEEEECTTCEE
T ss_pred CEEEEEEcCEEEEEEcCcCCc--EEEEEECCCcEE
Confidence 599999999999986543211 123679999986
No 161
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=23.60 E-value=1.4e+02 Score=24.46 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=27.8
Q ss_pred cEEEEecCC----------CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeech
Q 045637 179 LVSSLSTLR----------AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEE 225 (392)
Q Consensus 179 lk~~~y~~G----------~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~ 225 (392)
+....+.|| .+.++|++|..... ++.... -..+++||++=..
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~--~g~~~~---~~~~~~Gd~~~~p 97 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR--GGKAAG---GDTAIAPGYGYES 97 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEET--TCGGGT---SEEEESSEEEEEC
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEEc--CCCEec---ceEeCCCEEEEEC
Confidence 455667787 78899999999853 222210 1358899887544
No 162
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=23.49 E-value=1.5e+02 Score=30.46 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=32.9
Q ss_pred hHHHHhhhcEEEEecCC-----------CEEEEEEeceEEEEecCC-CceeeeeeEEeCCCCee
Q 045637 171 LPDALCERLVSSLSTLR-----------AQMLFIISGRLESSTTNG-GRTGFFNSITLRPGDFC 222 (392)
Q Consensus 171 ~L~~L~~~lk~~~y~~G-----------~~myfI~~G~V~v~~~~g-g~~~~~~~~~L~~Gd~F 222 (392)
.|..|-..+....+.|| +++++|++|.+.+...+. +... ....|++||+|
T Consensus 388 ~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v--~~~~L~~GDV~ 449 (531)
T 3fz3_A 388 ILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAI--LDQEVQQGQLF 449 (531)
T ss_dssp HHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEE--EEEEEETTCEE
T ss_pred ccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEE--EEEEecCCeEE
Confidence 45544444455555555 899999999999765432 2222 23689999987
No 163
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=23.46 E-value=1.5e+02 Score=29.86 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=33.0
Q ss_pred hHHHHhhhcEEEEecCC-----------CEEEEEEeceEEEEecCC-CceeeeeeEEeCCCCeee
Q 045637 171 LPDALCERLVSSLSTLR-----------AQMLFIISGRLESSTTNG-GRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 171 ~L~~L~~~lk~~~y~~G-----------~~myfI~~G~V~v~~~~g-g~~~~~~~~~L~~Gd~FG 223 (392)
.|..+--.+....+.|| .++.+|++|.+.+.-.+. +.. .+ ...|++||+|=
T Consensus 317 ~L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~-~f-~~~l~~GDVfv 379 (465)
T 3qac_A 317 ILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQS-VF-DEELSRGQLVV 379 (465)
T ss_dssp THHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCE-EE-EEEEETTCEEE
T ss_pred CccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcE-EE-EEEecCCeEEE
Confidence 45555444555555555 899999999998764332 222 22 35799999873
No 164
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=22.95 E-value=1.9e+02 Score=25.90 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=23.2
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeec
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGE 224 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE 224 (392)
+++++|++|++++... +++ ..|++||++=-
T Consensus 69 ee~~~Vl~G~~~~~~~--~~~-----~~l~~Gd~~~~ 98 (246)
T 1sfn_A 69 QRFAFVLSGEVDVAVG--GET-----RTLREYDYVYL 98 (246)
T ss_dssp EEEEEEEEEEEEEECS--SCE-----EEECTTEEEEE
T ss_pred eEEEEEEECEEEEEEC--CEE-----EEECCCCEEEE
Confidence 5799999999999863 332 57999998643
No 165
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=22.48 E-value=69 Score=25.04 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=21.0
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+.+|+|++|.+.+... ++. ..+++||++=
T Consensus 49 e~~~~vl~G~~~~~i~--~~~-----~~l~~Gd~i~ 77 (125)
T 3cew_A 49 EEIYGILSGKGFITID--GEK-----IELQAGDWLR 77 (125)
T ss_dssp EEEEEEEEEEEEEEET--TEE-----EEEETTEEEE
T ss_pred eEEEEEEeCEEEEEEC--CEE-----EEeCCCCEEE
Confidence 4577799999998863 222 5789998763
No 166
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=22.19 E-value=88 Score=31.22 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=23.8
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++++|++|++.+...+.+.. ....+++||++=
T Consensus 107 ~E~~yVl~G~g~v~~v~~~~~---~~~~l~~GDv~~ 139 (445)
T 2cav_A 107 DLLVLVLEGQAILVLVNPDGR---DTYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEEESEEEEEEEETTEE---EEEEEETTEEEE
T ss_pred ceEEEEEeCEEEEEEEeCCCC---EEEEecCCCEEE
Confidence 899999999998874322211 136799999874
No 167
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=21.54 E-value=63 Score=29.56 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=23.5
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeec
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGE 224 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE 224 (392)
+++++|++|++++.. ++++ ..|++||++=-
T Consensus 85 ee~~~Vl~G~l~~~~--~~~~-----~~L~~GD~~~~ 114 (274)
T 1sef_A 85 QTLVYVIDGRLRVSD--GQET-----HELEAGGYAYF 114 (274)
T ss_dssp EEEEEEEESEEEEEC--SSCE-----EEEETTEEEEE
T ss_pred eEEEEEEEeEEEEEE--CCEE-----EEECCCCEEEE
Confidence 689999999999986 3332 57999998753
No 168
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=21.51 E-value=69 Score=29.55 Aligned_cols=29 Identities=24% Similarity=0.617 Sum_probs=23.3
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeee
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCG 223 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FG 223 (392)
+++++|++|++++... +++ ..|++||++=
T Consensus 91 eE~~~Vl~G~l~v~v~--g~~-----~~L~~GD~i~ 119 (278)
T 1sq4_A 91 EAVLFVVEGELSLTLQ--GQV-----HAMQPGGYAF 119 (278)
T ss_dssp EEEEEEEESCEEEEES--SCE-----EEECTTEEEE
T ss_pred eEEEEEEeCEEEEEEC--CEE-----EEECCCCEEE
Confidence 7999999999999863 232 5799999864
No 169
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=21.39 E-value=2.2e+02 Score=25.01 Aligned_cols=49 Identities=10% Similarity=0.230 Sum_probs=33.3
Q ss_pred CEEEEEEeceEEEEecCCCceeeeeeEEeCCCCeeechhhHHHhhhcCCCCCCCcceEEEE-eeeEEEEEE
Q 045637 188 AQMLFIISGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLSKSTVNLPSSTRTVKA-LIEVEAFVL 257 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~gg~~~~~~~~~L~~Gd~FGE~~L~~aL~~~~~~~~~~rt~TV~A-~t~~el~~L 257 (392)
+++++|++|++++... +.. ..+++||++=-. . .....+++ .++++++.+
T Consensus 174 ~e~~~Vl~G~~~~~i~--g~~-----~~l~~Gd~i~ip--------~------~~~H~~~~~~~~~~~ll~ 223 (227)
T 3rns_A 174 DALVTVLDGEGKYYVD--GKP-----FIVKKGESAVLP--------A------NIPHAVEAETENFKMLLI 223 (227)
T ss_dssp EEEEEEEEEEEEEEET--TEE-----EEEETTEEEEEC--------T------TSCEEEECCSSCEEEEEE
T ss_pred cEEEEEEeEEEEEEEC--CEE-----EEECCCCEEEEC--------C------CCcEEEEeCCCCEEEEEE
Confidence 7899999999999863 222 579999986422 1 23456666 677766543
No 170
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=21.28 E-value=1.5e+02 Score=29.70 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=23.5
Q ss_pred CEEEEEEeceEEEEecC-CCceeeeeeEEeCCCCee
Q 045637 188 AQMLFIISGRLESSTTN-GGRTGFFNSITLRPGDFC 222 (392)
Q Consensus 188 ~~myfI~~G~V~v~~~~-gg~~~~~~~~~L~~Gd~F 222 (392)
.++++|++|++.+...+ .|...+ ...+++||+|
T Consensus 360 ~Ei~yVl~G~~~v~v~~~~G~~~~--~~~l~~GDv~ 393 (476)
T 1fxz_A 360 NSIIYALNGRALIQVVNCNGERVF--DGELQEGRVL 393 (476)
T ss_dssp CEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred CEEEEEEeCEEEEEEEecCCCEEe--eeEEcCCCEE
Confidence 89999999999887533 222211 2569999987
No 171
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=20.71 E-value=76 Score=20.41 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHhHH
Q 045637 292 PACFIQAAWRHCKKRKMAK 310 (392)
Q Consensus 292 ~~~~iq~~w~~~~~r~~~~ 310 (392)
|.-.||.-.|+.++||.+.
T Consensus 13 atfLIQdyFRkfkkrke~~ 31 (37)
T 2be6_D 13 ATFLIQEYFRKFKKRKEQG 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6678999999999998664
Done!