Query 045638
Match_columns 437
No_of_seqs 313 out of 2439
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:58:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2078 tRNA modification enzy 100.0 1.1E-51 2.5E-56 420.0 13.3 266 162-429 115-455 (495)
2 COG2520 Predicted methyltransf 100.0 2.3E-46 5E-51 378.0 23.6 233 178-425 67-340 (341)
3 PF02475 Met_10: Met-10+ like- 100.0 6.7E-39 1.5E-43 303.5 16.4 164 196-375 1-200 (200)
4 KOG1227 Putative methyltransfe 99.9 1.2E-22 2.6E-27 201.0 9.6 218 193-424 89-347 (351)
5 PRK15128 23S rRNA m(5)C1962 me 99.8 3.5E-18 7.6E-23 177.0 22.0 190 197-399 116-360 (396)
6 COG1092 Predicted SAM-dependen 99.8 3.1E-18 6.7E-23 177.0 20.5 192 196-399 111-357 (393)
7 COG2265 TrmA SAM-dependent met 99.7 5.8E-16 1.3E-20 162.1 18.8 183 214-419 211-431 (432)
8 PF10672 Methyltrans_SAM: S-ad 99.7 5.3E-16 1.1E-20 154.7 17.4 160 197-362 18-231 (286)
9 PRK11783 rlmL 23S rRNA m(2)G24 99.7 9E-15 2E-19 161.3 22.2 168 196-379 430-658 (702)
10 TIGR00479 rumA 23S rRNA (uraci 99.6 1.9E-14 4.1E-19 149.7 22.3 153 201-357 193-385 (431)
11 PF03602 Cons_hypoth95: Conser 99.6 5.5E-15 1.2E-19 138.4 13.3 137 240-381 2-156 (183)
12 TIGR02085 meth_trns_rumB 23S r 99.6 2.6E-13 5.7E-18 139.5 23.2 133 265-423 235-371 (374)
13 PRK03522 rumB 23S rRNA methylu 99.6 1E-12 2.2E-17 131.9 23.5 78 265-348 175-252 (315)
14 PF13659 Methyltransf_26: Meth 99.5 3.1E-14 6.6E-19 120.4 10.3 94 265-362 2-108 (117)
15 TIGR00095 RNA methyltransferas 99.5 6E-14 1.3E-18 131.7 12.8 118 240-360 10-144 (189)
16 TIGR00308 TRM1 tRNA(guanine-26 99.5 4.8E-14 1E-18 145.4 12.8 100 266-379 47-149 (374)
17 COG2263 Predicted RNA methylas 99.5 5E-13 1.1E-17 125.9 14.1 94 265-382 47-147 (198)
18 PRK04338 N(2),N(2)-dimethylgua 99.5 1.9E-13 4.1E-18 141.3 12.4 97 265-376 59-157 (382)
19 PRK10909 rsmD 16S rRNA m(2)G96 99.5 3.3E-13 7.2E-18 128.1 12.5 116 239-361 13-145 (199)
20 COG0742 N6-adenine-specific me 99.5 3.6E-13 7.8E-18 126.8 11.2 110 239-352 2-129 (187)
21 PF05958 tRNA_U5-meth_tr: tRNA 99.4 8.8E-13 1.9E-17 134.8 11.8 138 265-424 198-349 (352)
22 PRK05031 tRNA (uracil-5-)-meth 99.4 5.7E-12 1.2E-16 129.2 17.1 138 265-424 208-359 (362)
23 PF05175 MTS: Methyltransferas 99.4 6.4E-13 1.4E-17 121.9 8.9 91 264-362 32-133 (170)
24 COG4123 Predicted O-methyltran 99.4 3.3E-12 7.2E-17 125.1 13.5 139 264-426 45-214 (248)
25 TIGR02143 trmA_only tRNA (urac 99.3 2.8E-11 6.1E-16 123.8 16.2 138 265-424 199-350 (353)
26 PRK13168 rumA 23S rRNA m(5)U19 99.3 3.2E-11 6.8E-16 126.5 15.9 139 265-424 299-440 (443)
27 TIGR03533 L3_gln_methyl protei 99.3 1.1E-11 2.5E-16 123.0 11.4 76 265-347 123-200 (284)
28 TIGR00537 hemK_rel_arch HemK-r 99.3 5E-11 1.1E-15 109.5 11.9 98 265-380 21-143 (179)
29 PRK11805 N5-glutamine S-adenos 99.2 3.7E-11 8E-16 120.8 11.5 75 266-347 136-212 (307)
30 COG2890 HemK Methylase of poly 99.2 1.3E-11 2.8E-16 122.7 8.0 73 266-347 113-187 (280)
31 PRK14967 putative methyltransf 99.2 6.4E-11 1.4E-15 112.9 12.0 89 265-362 38-152 (223)
32 PF09445 Methyltransf_15: RNA 99.2 1.8E-11 3.9E-16 113.2 7.2 81 265-348 1-81 (163)
33 TIGR03704 PrmC_rel_meth putati 99.2 7E-11 1.5E-15 115.5 11.4 75 265-347 88-164 (251)
34 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.8E-10 3.9E-15 113.2 13.4 100 265-379 73-201 (264)
35 PF12847 Methyltransf_18: Meth 99.2 1.2E-10 2.6E-15 97.6 10.4 92 265-362 3-104 (112)
36 PRK00377 cbiT cobalt-precorrin 99.2 2.3E-10 5E-15 107.2 13.1 93 265-362 42-138 (198)
37 TIGR01177 conserved hypothetic 99.2 9.6E-11 2.1E-15 118.3 11.3 91 265-362 184-287 (329)
38 TIGR00536 hemK_fam HemK family 99.2 4E-10 8.6E-15 111.6 14.7 76 265-347 116-193 (284)
39 KOG2078 tRNA modification enzy 99.1 1.1E-11 2.3E-16 128.3 2.1 229 4-310 180-459 (495)
40 COG2264 PrmA Ribosomal protein 99.1 7.9E-10 1.7E-14 111.1 14.2 135 264-424 163-299 (300)
41 PRK15001 SAM-dependent 23S rib 99.1 2E-10 4.4E-15 118.8 10.4 99 265-378 230-341 (378)
42 TIGR00138 gidB 16S rRNA methyl 99.1 3E-10 6.5E-15 106.0 10.5 91 264-362 43-135 (181)
43 PRK08287 cobalt-precorrin-6Y C 99.1 2.3E-09 5E-14 99.2 16.0 96 265-377 33-131 (187)
44 TIGR03534 RF_mod_PrmC protein- 99.1 4.4E-10 9.4E-15 107.1 11.2 74 266-347 90-165 (251)
45 PRK14968 putative methyltransf 99.1 7.2E-10 1.6E-14 100.8 11.5 91 265-362 25-141 (188)
46 KOG2187 tRNA uracil-5-methyltr 99.1 4.3E-10 9.3E-15 118.9 11.1 82 265-348 385-467 (534)
47 COG2521 Predicted archaeal met 99.1 2.1E-10 4.5E-15 111.5 7.8 123 264-397 135-266 (287)
48 PRK00121 trmB tRNA (guanine-N( 99.1 1.3E-09 2.8E-14 102.9 12.8 101 265-377 42-156 (202)
49 COG2813 RsmC 16S RNA G1207 met 99.1 7.9E-10 1.7E-14 110.9 11.4 90 264-362 159-259 (300)
50 PF13847 Methyltransf_31: Meth 99.1 5.4E-10 1.2E-14 99.8 9.1 101 265-379 5-112 (152)
51 PRK07402 precorrin-6B methylas 99.1 1.6E-09 3.6E-14 101.0 12.7 100 265-378 42-143 (196)
52 PRK01544 bifunctional N5-gluta 99.1 1.9E-09 4.1E-14 115.3 14.8 76 265-347 140-217 (506)
53 PRK11036 putative S-adenosyl-L 99.1 1.7E-09 3.7E-14 105.0 13.2 93 265-362 46-142 (255)
54 PF06325 PrmA: Ribosomal prote 99.1 1.7E-10 3.7E-15 115.8 6.3 100 264-381 162-263 (295)
55 TIGR00091 tRNA (guanine-N(7)-) 99.1 1.9E-09 4E-14 101.0 12.5 101 265-377 18-132 (194)
56 TIGR02469 CbiT precorrin-6Y C5 99.1 1.6E-09 3.6E-14 91.4 11.0 92 265-362 21-115 (124)
57 PRK00107 gidB 16S rRNA methylt 99.1 1.5E-09 3.3E-14 102.1 11.8 99 264-378 46-146 (187)
58 TIGR00406 prmA ribosomal prote 99.0 1.2E-09 2.7E-14 108.5 11.6 100 265-380 161-262 (288)
59 PRK14904 16S rRNA methyltransf 99.0 1.3E-09 2.8E-14 114.6 12.0 102 265-382 252-382 (445)
60 PF01170 UPF0020: Putative RNA 99.0 3.3E-10 7.2E-15 105.5 6.4 77 265-347 30-117 (179)
61 PRK14902 16S rRNA methyltransf 99.0 1.6E-09 3.4E-14 113.7 12.2 92 265-362 252-372 (444)
62 PRK09489 rsmC 16S ribosomal RN 99.0 1.6E-09 3.4E-14 110.8 11.4 98 265-380 198-306 (342)
63 COG1867 TRM1 N2,N2-dimethylgua 99.0 1.3E-09 2.9E-14 111.6 10.6 103 264-380 53-157 (380)
64 PRK11207 tellurite resistance 99.0 2.2E-09 4.7E-14 100.9 11.3 90 265-362 32-127 (197)
65 PLN02781 Probable caffeoyl-CoA 99.0 3.8E-09 8.2E-14 102.3 13.3 98 265-362 70-171 (234)
66 PF02005 TRM: N2,N2-dimethylgu 99.0 1.4E-09 3.1E-14 112.6 10.4 100 266-378 52-155 (377)
67 PRK09328 N5-glutamine S-adenos 99.0 5.6E-09 1.2E-13 101.3 14.0 75 265-347 110-186 (275)
68 PRK04266 fibrillarin; Provisio 99.0 6E-09 1.3E-13 100.8 13.9 144 265-424 74-225 (226)
69 PRK14966 unknown domain/N5-glu 99.0 9.2E-09 2E-13 107.7 16.2 75 265-346 253-329 (423)
70 TIGR00477 tehB tellurite resis 99.0 3E-09 6.6E-14 99.8 11.4 89 265-362 32-126 (195)
71 PRK14901 16S rRNA methyltransf 99.0 4.1E-09 8.9E-14 110.5 12.3 95 265-362 254-377 (434)
72 PLN02476 O-methyltransferase 99.0 8.5E-09 1.8E-13 102.9 13.4 98 265-362 120-221 (278)
73 PRK10901 16S rRNA methyltransf 98.9 7.5E-09 1.6E-13 108.3 12.8 93 264-362 245-365 (427)
74 PRK14903 16S rRNA methyltransf 98.9 7.3E-09 1.6E-13 108.8 12.6 92 265-362 239-359 (431)
75 PRK12335 tellurite resistance 98.9 6.3E-09 1.4E-13 103.1 11.4 98 265-379 122-225 (287)
76 TIGR00080 pimt protein-L-isoas 98.9 3.3E-09 7.2E-14 100.6 9.0 89 265-362 79-170 (215)
77 PRK13944 protein-L-isoaspartat 98.9 5.7E-09 1.2E-13 98.6 10.1 90 265-362 74-166 (205)
78 PLN02244 tocopherol O-methyltr 98.9 7.3E-09 1.6E-13 105.4 11.2 102 265-380 120-226 (340)
79 PRK00517 prmA ribosomal protei 98.9 1.6E-08 3.5E-13 98.3 13.2 94 265-380 121-216 (250)
80 smart00650 rADc Ribosomal RNA 98.9 5.4E-09 1.2E-13 95.5 9.1 82 265-355 15-97 (169)
81 PRK14121 tRNA (guanine-N(7)-)- 98.9 1.2E-08 2.6E-13 106.0 12.4 100 265-377 124-235 (390)
82 PHA03412 putative methyltransf 98.9 3.9E-09 8.5E-14 103.1 8.3 149 264-427 50-231 (241)
83 PRK11727 23S rRNA mA1618 methy 98.9 5.4E-09 1.2E-13 106.2 9.3 82 265-348 116-201 (321)
84 TIGR02752 MenG_heptapren 2-hep 98.9 1.4E-08 3.1E-13 96.2 11.6 101 265-380 47-154 (231)
85 TIGR00563 rsmB ribosomal RNA s 98.9 1E-08 2.2E-13 107.3 11.4 95 264-362 239-361 (426)
86 PLN02396 hexaprenyldihydroxybe 98.9 1.5E-08 3.3E-13 102.9 12.2 100 265-378 133-236 (322)
87 PHA03411 putative methyltransf 98.9 2.3E-08 5E-13 99.7 12.3 70 265-347 66-137 (279)
88 PLN02672 methionine S-methyltr 98.8 6.6E-09 1.4E-13 119.2 8.7 78 265-347 120-214 (1082)
89 COG0116 Predicted N6-adenine-s 98.8 1.3E-08 2.8E-13 105.1 9.8 77 265-347 193-310 (381)
90 PF01596 Methyltransf_3: O-met 98.8 4.9E-08 1.1E-12 93.3 12.4 98 265-362 47-148 (205)
91 cd02440 AdoMet_MTases S-adenos 98.8 7.2E-08 1.6E-12 75.9 11.2 91 266-362 1-97 (107)
92 COG2242 CobL Precorrin-6B meth 98.8 4.9E-08 1.1E-12 92.2 12.0 91 265-362 36-128 (187)
93 PRK04457 spermidine synthase; 98.8 5.6E-08 1.2E-12 95.8 12.3 103 265-380 68-180 (262)
94 KOG2730 Methylase [General fun 98.8 7E-09 1.5E-13 100.1 5.8 82 265-348 96-177 (263)
95 PRK11783 rlmL 23S rRNA m(2)G24 98.8 1E-08 2.3E-13 113.6 7.6 78 265-346 192-313 (702)
96 PRK15451 tRNA cmo(5)U34 methyl 98.8 5.2E-08 1.1E-12 94.5 11.6 99 265-379 58-166 (247)
97 COG2227 UbiG 2-polyprenyl-3-me 98.8 3.2E-08 6.9E-13 96.6 10.0 102 262-379 58-163 (243)
98 PF01209 Ubie_methyltran: ubiE 98.8 3.5E-08 7.5E-13 95.9 10.3 103 265-383 49-159 (233)
99 PTZ00338 dimethyladenosine tra 98.8 2.4E-08 5.2E-13 100.2 8.8 75 265-347 38-112 (294)
100 PTZ00146 fibrillarin; Provisio 98.8 1.2E-07 2.5E-12 95.4 13.5 141 213-396 110-256 (293)
101 PRK10742 putative methyltransf 98.7 3.6E-08 7.9E-13 96.9 9.4 77 265-346 90-174 (250)
102 PF02353 CMAS: Mycolic acid cy 98.7 7.8E-08 1.7E-12 95.6 11.1 100 264-380 63-169 (273)
103 PRK13942 protein-L-isoaspartat 98.7 5.3E-08 1.2E-12 92.7 9.5 89 265-362 78-169 (212)
104 PLN02233 ubiquinone biosynthes 98.7 8.1E-08 1.7E-12 94.3 11.1 104 265-382 75-187 (261)
105 PRK11873 arsM arsenite S-adeno 98.7 1.8E-07 3.8E-12 91.4 12.9 102 265-381 79-187 (272)
106 KOG3420 Predicted RNA methylas 98.7 2E-08 4.4E-13 91.8 5.7 89 264-360 49-144 (185)
107 PRK00811 spermidine synthase; 98.7 5.6E-07 1.2E-11 89.6 16.5 93 265-362 78-184 (283)
108 TIGR02021 BchM-ChlM magnesium 98.7 1.2E-07 2.5E-12 89.8 11.1 88 264-360 56-149 (219)
109 PRK14896 ksgA 16S ribosomal RN 98.7 3.4E-08 7.4E-13 96.7 7.4 73 265-348 31-103 (258)
110 PRK00312 pcm protein-L-isoaspa 98.7 9.1E-08 2E-12 90.2 9.9 89 265-362 80-168 (212)
111 KOG2904 Predicted methyltransf 98.7 3.5E-08 7.6E-13 98.0 6.7 170 146-346 35-232 (328)
112 COG2226 UbiE Methylase involve 98.7 1.6E-07 3.6E-12 91.8 11.1 104 265-383 53-162 (238)
113 TIGR00740 methyltransferase, p 98.6 2.2E-07 4.9E-12 89.1 11.5 100 265-380 55-164 (239)
114 TIGR03840 TMPT_Se_Te thiopurin 98.6 1.1E-07 2.3E-12 91.3 9.1 100 265-380 36-155 (213)
115 COG1041 Predicted DNA modifica 98.6 6.9E-08 1.5E-12 98.7 8.1 91 265-362 199-303 (347)
116 COG4076 Predicted RNA methylas 98.6 3.5E-08 7.5E-13 93.6 5.0 75 265-348 34-108 (252)
117 PF02390 Methyltransf_4: Putat 98.6 2E-07 4.3E-12 88.2 10.1 101 265-377 19-133 (195)
118 PRK13255 thiopurine S-methyltr 98.6 1.3E-07 2.8E-12 91.0 8.7 90 265-362 39-148 (218)
119 PF13649 Methyltransf_25: Meth 98.6 9.2E-08 2E-12 79.7 6.7 88 267-362 1-100 (101)
120 PRK10258 biotin biosynthesis p 98.6 1.6E-07 3.4E-12 90.6 9.1 97 265-381 44-144 (251)
121 PF05185 PRMT5: PRMT5 arginine 98.6 7.7E-08 1.7E-12 101.8 7.6 91 265-362 188-290 (448)
122 smart00828 PKS_MT Methyltransf 98.6 2.8E-07 6E-12 87.0 10.6 100 265-379 1-106 (224)
123 PRK13943 protein-L-isoaspartat 98.6 2.7E-07 5.9E-12 93.9 11.0 89 265-362 82-173 (322)
124 TIGR01983 UbiG ubiquinone bios 98.6 6.6E-07 1.4E-11 84.2 12.7 101 264-378 46-150 (224)
125 PRK00274 ksgA 16S ribosomal RN 98.6 1.3E-07 2.9E-12 93.3 8.1 81 265-355 44-125 (272)
126 PF08241 Methyltransf_11: Meth 98.6 6.4E-08 1.4E-12 77.4 4.6 85 268-362 1-90 (95)
127 PRK14103 trans-aconitate 2-met 98.6 4E-07 8.7E-12 88.3 10.5 83 265-362 31-119 (255)
128 PRK03612 spermidine synthase; 98.5 1.3E-06 2.8E-11 94.1 15.1 93 265-362 299-408 (521)
129 PRK01683 trans-aconitate 2-met 98.5 4.8E-07 1E-11 87.4 10.0 85 265-362 33-123 (258)
130 PRK00216 ubiE ubiquinone/menaq 98.5 7.3E-07 1.6E-11 83.8 10.8 102 265-380 53-161 (239)
131 PRK11188 rrmJ 23S rRNA methylt 98.5 6.1E-07 1.3E-11 85.5 10.3 97 265-381 53-169 (209)
132 PLN02336 phosphoethanolamine N 98.5 9.1E-07 2E-11 93.2 12.2 101 265-381 268-373 (475)
133 TIGR00417 speE spermidine synt 98.5 5.7E-06 1.2E-10 81.6 17.0 93 265-362 74-179 (270)
134 COG2519 GCD14 tRNA(1-methylade 98.5 8.5E-07 1.8E-11 87.4 10.8 99 263-377 94-195 (256)
135 KOG3191 Predicted N6-DNA-methy 98.5 4.1E-07 8.9E-12 85.9 8.1 74 264-346 44-120 (209)
136 PF03848 TehB: Tellurite resis 98.5 4.3E-07 9.3E-12 86.3 8.3 89 265-362 32-126 (192)
137 KOG1253 tRNA methyltransferase 98.5 1.5E-07 3.2E-12 99.6 5.6 105 265-379 111-218 (525)
138 PRK07580 Mg-protoporphyrin IX 98.5 1E-06 2.2E-11 83.1 10.8 70 265-343 65-134 (230)
139 TIGR00755 ksgA dimethyladenosi 98.5 1.2E-06 2.7E-11 85.3 11.2 81 265-356 31-115 (253)
140 PF08704 GCD14: tRNA methyltra 98.5 7.3E-07 1.6E-11 87.7 9.5 101 264-377 41-146 (247)
141 COG2230 Cfa Cyclopropane fatty 98.4 1.8E-06 3.9E-11 86.5 11.9 102 264-382 73-181 (283)
142 PTZ00098 phosphoethanolamine N 98.4 9.1E-07 2E-11 87.0 9.7 100 265-381 54-160 (263)
143 TIGR02716 C20_methyl_CrtF C-20 98.4 1.5E-06 3.3E-11 86.6 10.7 99 265-380 151-257 (306)
144 PRK01581 speE spermidine synth 98.4 2.2E-06 4.9E-11 88.6 12.2 93 265-362 152-261 (374)
145 PRK11705 cyclopropane fatty ac 98.4 2E-06 4.3E-11 89.3 11.8 95 265-380 169-270 (383)
146 PLN02366 spermidine synthase 98.4 7.5E-06 1.6E-10 82.9 15.6 94 265-362 93-199 (308)
147 PRK05134 bifunctional 3-demeth 98.4 3.5E-06 7.5E-11 80.2 12.2 91 265-362 50-144 (233)
148 PLN02336 phosphoethanolamine N 98.4 1.1E-06 2.3E-11 92.7 8.5 100 265-379 39-144 (475)
149 PRK11933 yebU rRNA (cytosine-C 98.3 3.5E-06 7.6E-11 89.8 12.3 101 265-380 115-244 (470)
150 PLN02589 caffeoyl-CoA O-methyl 98.3 6.2E-06 1.3E-10 81.2 13.0 98 265-362 81-183 (247)
151 PRK06922 hypothetical protein; 98.3 2.3E-06 5.1E-11 94.0 10.9 100 265-378 420-538 (677)
152 PRK15068 tRNA mo(5)U34 methylt 98.3 4.5E-06 9.8E-11 84.7 12.3 91 265-362 124-219 (322)
153 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 4E-06 8.8E-11 77.9 10.4 98 265-379 41-145 (223)
154 COG0220 Predicted S-adenosylme 98.3 5.7E-06 1.2E-10 80.5 11.6 99 265-375 50-162 (227)
155 PLN02585 magnesium protoporphy 98.3 2.5E-06 5.5E-11 86.6 9.0 70 265-343 146-219 (315)
156 PF10294 Methyltransf_16: Puta 98.3 5.7E-06 1.2E-10 76.6 10.4 117 264-393 46-171 (173)
157 PLN03075 nicotianamine synthas 98.3 5.5E-06 1.2E-10 83.6 10.9 92 265-362 125-226 (296)
158 PRK08317 hypothetical protein; 98.3 6E-06 1.3E-10 77.0 10.5 90 265-362 21-117 (241)
159 TIGR02072 BioC biotin biosynth 98.3 4.6E-06 1E-10 78.1 9.3 97 265-380 36-138 (240)
160 COG4122 Predicted O-methyltran 98.2 1.3E-05 2.8E-10 77.8 12.4 104 265-380 61-169 (219)
161 PF02384 N6_Mtase: N-6 DNA Met 98.2 9.3E-07 2E-11 88.0 4.4 80 265-348 48-137 (311)
162 KOG1270 Methyltransferases [Co 98.2 2.4E-06 5.3E-11 84.6 7.2 89 265-362 91-188 (282)
163 TIGR03587 Pse_Me-ase pseudamin 98.2 1.7E-06 3.7E-11 82.2 5.9 67 265-344 45-113 (204)
164 TIGR00452 methyltransferase, p 98.2 1.3E-05 2.9E-10 81.3 11.9 99 265-378 123-226 (314)
165 TIGR01444 fkbM_fam methyltrans 98.2 3E-06 6.6E-11 74.2 6.3 57 266-323 1-59 (143)
166 COG0144 Sun tRNA and rRNA cyto 98.2 1.3E-05 2.7E-10 82.7 11.6 95 264-362 157-281 (355)
167 PLN02823 spermine synthase 98.2 4.8E-05 1E-09 78.0 15.4 93 265-362 105-213 (336)
168 TIGR00438 rrmJ cell division p 98.2 1.3E-05 2.9E-10 74.3 10.2 96 265-380 34-149 (188)
169 PF05401 NodS: Nodulation prot 98.2 1.3E-05 2.9E-10 76.5 10.2 145 265-427 45-199 (201)
170 PF01135 PCMT: Protein-L-isoas 98.1 3.9E-06 8.6E-11 80.5 6.1 89 265-362 74-165 (209)
171 PF13489 Methyltransf_23: Meth 98.1 1.1E-05 2.3E-10 71.0 8.3 91 265-380 24-118 (161)
172 PRK05785 hypothetical protein; 98.1 1.1E-05 2.5E-10 77.7 9.1 82 265-361 53-139 (226)
173 PLN02490 MPBQ/MSBQ methyltrans 98.1 1.4E-05 3.1E-10 82.0 10.2 88 265-362 115-208 (340)
174 KOG1663 O-methyltransferase [S 98.1 3.2E-05 7E-10 75.4 11.9 98 265-362 75-176 (237)
175 TIGR03438 probable methyltrans 98.1 1.8E-05 4E-10 79.3 10.3 97 265-362 65-170 (301)
176 KOG1499 Protein arginine N-met 98.1 4E-06 8.7E-11 85.7 5.6 88 264-358 61-152 (346)
177 KOG1500 Protein arginine N-met 98.1 1.3E-05 2.8E-10 82.0 8.9 111 262-381 176-293 (517)
178 PRK06202 hypothetical protein; 98.1 9.8E-06 2.1E-10 77.5 7.5 86 265-360 62-159 (232)
179 KOG1540 Ubiquinone biosynthesi 98.0 2.9E-05 6.3E-10 76.9 10.4 105 265-383 102-220 (296)
180 PF08242 Methyltransf_12: Meth 98.0 4.1E-07 8.9E-12 75.2 -2.2 90 268-362 1-96 (99)
181 COG0030 KsgA Dimethyladenosine 98.0 1E-05 2.2E-10 80.3 7.2 75 265-347 32-106 (259)
182 PRK11088 rrmA 23S rRNA methylt 98.0 1.1E-05 2.3E-10 79.4 7.2 83 265-362 87-174 (272)
183 TIGR02987 met_A_Alw26 type II 98.0 7E-06 1.5E-10 88.1 5.6 82 265-348 33-124 (524)
184 PRK00050 16S rRNA m(4)C1402 me 98.0 2.5E-05 5.4E-10 78.9 9.1 77 265-346 21-100 (296)
185 TIGR02081 metW methionine bios 98.0 1.7E-05 3.8E-10 73.9 7.1 84 265-360 15-103 (194)
186 COG2518 Pcm Protein-L-isoaspar 98.0 1.6E-05 3.4E-10 76.6 6.8 88 264-362 73-162 (209)
187 cd00315 Cyt_C5_DNA_methylase C 97.9 7.6E-05 1.6E-09 74.1 11.5 140 266-423 2-163 (275)
188 PF01564 Spermine_synth: Sperm 97.9 0.00017 3.7E-09 70.7 13.8 122 265-401 78-213 (246)
189 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.9 5.2E-05 1.1E-09 75.8 10.0 77 265-346 87-166 (283)
190 PRK01544 bifunctional N5-gluta 97.9 9.6E-05 2.1E-09 79.6 11.5 98 265-375 349-460 (506)
191 PF04816 DUF633: Family of unk 97.9 5E-05 1.1E-09 72.9 8.4 60 267-326 1-62 (205)
192 PF07021 MetW: Methionine bios 97.8 2.9E-05 6.4E-10 73.9 6.3 84 265-360 15-103 (193)
193 PF00398 RrnaAD: Ribosomal RNA 97.8 7.9E-05 1.7E-09 73.3 9.5 101 265-380 32-133 (262)
194 KOG4300 Predicted methyltransf 97.8 0.00017 3.7E-09 69.8 10.3 105 265-383 78-188 (252)
195 PF00145 DNA_methylase: C-5 cy 97.8 4E-05 8.7E-10 75.2 6.2 122 266-406 2-140 (335)
196 PF05971 Methyltransf_10: Prot 97.7 4.6E-05 9.9E-10 77.1 5.2 80 266-347 105-188 (299)
197 PF05724 TPMT: Thiopurine S-me 97.7 0.00013 2.8E-09 70.5 7.9 93 265-362 39-148 (218)
198 COG3897 Predicted methyltransf 97.7 3.8E-05 8.3E-10 73.5 4.0 88 264-362 80-172 (218)
199 smart00138 MeTrc Methyltransfe 97.7 8.7E-05 1.9E-09 73.3 6.7 91 266-362 102-235 (264)
200 PRK13256 thiopurine S-methyltr 97.6 0.00018 3.9E-09 70.1 8.3 105 265-380 45-166 (226)
201 PRK04148 hypothetical protein; 97.6 0.00021 4.6E-09 64.5 7.7 71 265-348 18-90 (134)
202 KOG1122 tRNA and rRNA cytosine 97.5 0.00027 5.8E-09 74.2 8.5 103 264-380 242-373 (460)
203 KOG0820 Ribosomal RNA adenine 97.5 0.00021 4.5E-09 71.6 6.8 74 265-346 60-133 (315)
204 TIGR00478 tly hemolysin TlyA f 97.4 0.00015 3.2E-09 70.7 3.8 40 265-304 77-118 (228)
205 KOG2671 Putative RNA methylase 97.3 0.00012 2.6E-09 75.2 2.2 82 264-350 209-298 (421)
206 COG0270 Dcm Site-specific DNA 97.3 0.00041 9E-09 70.5 6.1 72 266-346 5-77 (328)
207 COG4106 Tam Trans-aconitate me 97.2 0.00069 1.5E-08 66.1 6.5 91 265-377 32-129 (257)
208 PF08003 Methyltransf_9: Prote 97.2 0.0024 5.3E-08 64.9 10.7 92 264-362 116-212 (315)
209 TIGR00675 dcm DNA-methyltransf 97.2 0.00063 1.4E-08 68.9 6.5 95 267-380 1-110 (315)
210 PHA01634 hypothetical protein 97.2 0.00055 1.2E-08 61.8 5.3 99 263-381 28-128 (156)
211 KOG1271 Methyltransferases [Ge 97.2 0.00061 1.3E-08 64.9 5.7 92 265-362 69-174 (227)
212 COG3963 Phospholipid N-methylt 97.1 0.005 1.1E-07 58.1 11.0 91 265-362 50-149 (194)
213 PF00891 Methyltransf_2: O-met 97.1 0.0013 2.8E-08 63.2 6.7 96 265-383 102-205 (241)
214 PF01861 DUF43: Protein of unk 97.0 0.0029 6.4E-08 62.3 8.7 104 264-382 45-153 (243)
215 COG0421 SpeE Spermidine syntha 97.0 0.0069 1.5E-07 61.0 11.5 93 265-362 78-183 (282)
216 PF01728 FtsJ: FtsJ-like methy 97.0 0.0035 7.6E-08 57.6 8.7 107 265-394 25-154 (181)
217 PRK11760 putative 23S rRNA C24 97.0 0.0075 1.6E-07 62.4 11.7 84 265-362 213-296 (357)
218 PF13578 Methyltransf_24: Meth 96.9 0.0013 2.8E-08 55.2 4.3 97 268-377 1-105 (106)
219 PF01555 N6_N4_Mtase: DNA meth 96.9 0.0014 3.1E-08 60.7 5.0 40 264-303 192-231 (231)
220 COG4262 Predicted spermidine s 96.8 0.01 2.3E-07 61.9 11.4 93 265-362 291-400 (508)
221 PF13679 Methyltransf_32: Meth 96.8 0.0022 4.8E-08 57.3 5.8 60 265-324 27-94 (141)
222 PF04445 SAM_MT: Putative SAM- 96.8 0.0015 3.2E-08 64.2 4.3 76 265-345 77-160 (234)
223 PRK10458 DNA cytosine methylas 96.7 0.0035 7.7E-08 67.1 6.7 77 266-346 90-179 (467)
224 PF08123 DOT1: Histone methyla 96.6 0.013 2.7E-07 56.4 9.3 92 265-361 44-147 (205)
225 PRK11524 putative methyltransf 96.5 0.0035 7.6E-08 62.4 5.4 43 264-306 209-251 (284)
226 PF02527 GidB: rRNA small subu 96.5 0.027 5.8E-07 53.3 10.8 90 265-362 50-141 (184)
227 PRK13699 putative methylase; P 96.5 0.0043 9.4E-08 60.2 5.6 44 264-307 164-207 (227)
228 KOG2915 tRNA(1-methyladenosine 96.3 0.047 1E-06 55.1 11.5 94 264-362 106-202 (314)
229 TIGR00006 S-adenosyl-methyltra 96.3 0.029 6.4E-07 57.1 10.4 81 265-348 22-104 (305)
230 KOG1501 Arginine N-methyltrans 96.3 0.0056 1.2E-07 65.0 5.3 54 266-319 69-123 (636)
231 KOG2361 Predicted methyltransf 96.2 0.0062 1.3E-07 60.2 4.8 94 265-362 73-176 (264)
232 COG2384 Predicted SAM-dependen 96.2 0.0097 2.1E-07 58.1 6.0 90 265-360 18-111 (226)
233 PLN02232 ubiquinone biosynthes 96.1 0.023 5E-07 51.8 8.0 80 289-382 1-86 (160)
234 PF05148 Methyltransf_8: Hypot 96.1 0.034 7.3E-07 54.1 9.2 124 265-427 74-200 (219)
235 COG0286 HsdM Type I restrictio 96.1 0.0046 1E-07 66.5 3.6 84 265-349 188-277 (489)
236 PRK00536 speE spermidine synth 95.9 0.18 4E-06 50.3 13.7 88 265-362 74-164 (262)
237 KOG3010 Methyltransferase [Gen 95.8 0.021 4.6E-07 56.5 6.4 103 265-380 35-140 (261)
238 COG0357 GidB Predicted S-adeno 95.6 0.22 4.8E-06 48.5 12.8 104 264-383 68-174 (215)
239 KOG1661 Protein-L-isoaspartate 95.6 0.026 5.7E-07 55.0 6.1 90 265-362 84-186 (237)
240 PF03291 Pox_MCEL: mRNA cappin 95.6 0.027 5.8E-07 57.9 6.5 97 265-362 64-179 (331)
241 PF06962 rRNA_methylase: Putat 95.0 0.078 1.7E-06 48.4 7.1 72 287-362 1-85 (140)
242 PF05891 Methyltransf_PK: AdoM 95.0 0.12 2.6E-06 50.4 8.6 103 265-382 57-166 (218)
243 PF07091 FmrO: Ribosomal RNA m 94.9 0.087 1.9E-06 52.4 7.7 69 265-342 107-177 (251)
244 KOG2899 Predicted methyltransf 94.9 0.028 6.1E-07 55.9 4.0 46 262-307 57-104 (288)
245 PF02086 MethyltransfD12: D12 94.7 0.028 6.1E-07 54.0 3.6 38 265-302 22-59 (260)
246 COG1189 Predicted rRNA methyla 94.7 0.053 1.1E-06 53.6 5.5 89 264-362 80-171 (245)
247 COG0293 FtsJ 23S rRNA methylas 94.6 0.19 4E-06 48.7 8.7 98 265-382 47-164 (205)
248 KOG1541 Predicted protein carb 94.4 0.04 8.7E-07 54.2 3.8 87 265-362 52-153 (270)
249 KOG4058 Uncharacterized conser 94.3 0.031 6.7E-07 52.0 2.6 60 265-324 74-134 (199)
250 PF12147 Methyltransf_20: Puta 94.0 0.24 5.2E-06 50.5 8.5 95 265-362 137-242 (311)
251 PF01795 Methyltransf_5: MraW 94.0 0.15 3.3E-06 52.2 7.2 85 265-351 22-108 (310)
252 COG1743 Adenine-specific DNA m 93.9 0.051 1.1E-06 61.2 3.8 45 264-308 91-135 (875)
253 KOG0822 Protein kinase inhibit 93.7 0.049 1.1E-06 59.2 3.2 91 265-362 369-471 (649)
254 KOG1975 mRNA cap methyltransfe 93.6 0.24 5.2E-06 51.2 7.7 97 265-362 119-230 (389)
255 PRK11524 putative methyltransf 93.3 0.18 3.9E-06 50.3 6.3 46 313-362 8-73 (284)
256 PF01269 Fibrillarin: Fibrilla 93.3 1.2 2.6E-05 43.9 11.7 92 265-362 75-171 (229)
257 COG1568 Predicted methyltransf 93.3 0.16 3.4E-06 51.6 5.8 94 263-362 152-250 (354)
258 KOG2198 tRNA cytosine-5-methyl 93.1 0.41 8.9E-06 50.1 8.6 82 264-346 156-246 (375)
259 COG0500 SmtA SAM-dependent met 93.1 1.3 2.8E-05 34.9 9.7 90 267-362 52-148 (257)
260 TIGR00497 hsdM type I restrict 92.9 0.11 2.4E-06 55.9 4.3 80 265-348 219-305 (501)
261 PF11599 AviRa: RRNA methyltra 92.8 0.15 3.2E-06 50.0 4.6 44 265-308 53-100 (246)
262 PF05050 Methyltransf_21: Meth 92.7 0.16 3.4E-06 44.8 4.4 50 269-318 1-58 (167)
263 PF03059 NAS: Nicotianamine sy 92.2 0.85 1.8E-05 46.1 9.3 92 265-362 122-223 (276)
264 PF00107 ADH_zinc_N: Zinc-bind 92.1 0.57 1.2E-05 39.9 7.0 91 273-380 1-92 (130)
265 COG4976 Predicted methyltransf 92.0 0.071 1.5E-06 52.8 1.4 88 265-362 127-218 (287)
266 TIGR03439 methyl_EasF probable 91.8 1.6 3.5E-05 44.8 11.0 98 265-362 78-190 (319)
267 PRK13699 putative methylase; P 91.4 0.49 1.1E-05 46.0 6.5 45 314-362 2-65 (227)
268 COG0863 DNA modification methy 91.4 0.33 7.1E-06 47.6 5.3 47 263-309 222-268 (302)
269 KOG4589 Cell division protein 91.4 1.6 3.4E-05 42.4 9.6 123 265-414 71-210 (232)
270 PF04378 RsmJ: Ribosomal RNA s 91.2 0.86 1.9E-05 45.3 8.1 102 268-379 62-167 (245)
271 PTZ00357 methyltransferase; Pr 90.9 0.47 1E-05 53.4 6.4 96 266-361 703-823 (1072)
272 PF05219 DREV: DREV methyltran 90.4 1.5 3.2E-05 44.2 8.8 100 265-380 96-200 (265)
273 COG0275 Predicted S-adenosylme 89.8 2 4.4E-05 44.1 9.4 81 265-348 25-108 (314)
274 KOG3045 Predicted RNA methylas 89.4 0.98 2.1E-05 45.7 6.6 121 265-426 182-305 (325)
275 COG1889 NOP1 Fibrillarin-like 88.4 18 0.0004 35.5 14.3 144 265-423 78-228 (231)
276 COG3129 Predicted SAM-dependen 87.5 0.78 1.7E-05 45.7 4.5 77 266-346 81-163 (292)
277 KOG3115 Methyltransferase-like 86.0 3 6.5E-05 41.0 7.5 96 265-362 62-176 (249)
278 KOG2912 Predicted DNA methylas 85.3 0.84 1.8E-05 47.3 3.6 79 268-348 107-190 (419)
279 PF07279 DUF1442: Protein of u 84.9 14 0.0003 36.3 11.6 101 265-378 43-150 (218)
280 COG2961 ComJ Protein involved 84.4 3.7 8E-05 41.3 7.5 90 267-361 92-185 (279)
281 PF10354 DUF2431: Domain of un 83.9 2.6 5.7E-05 39.2 6.0 99 273-381 6-129 (166)
282 COG1063 Tdh Threonine dehydrog 82.2 12 0.00026 38.4 10.6 101 265-382 170-274 (350)
283 COG3392 Adenine-specific DNA m 81.1 1.1 2.5E-05 45.2 2.6 34 265-298 29-62 (330)
284 KOG0919 C-5 cytosine-specific 80.7 1.4 3E-05 44.2 3.0 71 266-346 5-79 (338)
285 KOG1201 Hydroxysteroid 17-beta 80.0 3.2 6.9E-05 42.5 5.4 57 264-323 38-97 (300)
286 PF09243 Rsm22: Mitochondrial 79.3 2.7 5.9E-05 41.9 4.6 39 265-303 35-76 (274)
287 PF06080 DUF938: Protein of un 79.1 3.9 8.5E-05 39.6 5.5 105 266-378 28-142 (204)
288 KOG2651 rRNA adenine N-6-methy 77.6 3.2 6.9E-05 44.1 4.6 40 262-301 151-192 (476)
289 PRK13849 putative crown gall t 77.1 8.3 0.00018 37.5 7.2 72 277-348 22-95 (231)
290 PF07942 N2227: N2227-like pro 76.4 6.9 0.00015 39.5 6.5 44 265-310 58-101 (270)
291 COG1064 AdhP Zn-dependent alco 74.8 18 0.00039 37.8 9.2 92 265-379 168-261 (339)
292 KOG1269 SAM-dependent methyltr 72.9 2.7 5.9E-05 44.0 2.8 105 262-381 109-219 (364)
293 PF03721 UDPG_MGDP_dh_N: UDP-g 72.7 3.7 8.1E-05 38.6 3.4 30 273-302 7-40 (185)
294 PF07015 VirC1: VirC1 protein; 71.1 17 0.00037 36.0 7.6 77 280-356 25-103 (231)
295 PF01739 CheR: CheR methyltran 70.8 4.4 9.5E-05 38.8 3.4 39 266-304 34-83 (196)
296 PF02254 TrkA_N: TrkA-N domain 69.0 20 0.00044 29.9 6.9 69 271-349 3-75 (116)
297 KOG2793 Putative N2,N2-dimethy 66.4 10 0.00022 37.9 5.1 93 266-362 89-192 (248)
298 PRK10037 cell division protein 66.2 33 0.00071 33.2 8.5 22 276-297 21-42 (250)
299 KOG1709 Guanidinoacetate methy 65.6 36 0.00079 34.0 8.5 92 265-362 103-199 (271)
300 PRK01747 mnmC bifunctional tRN 65.5 33 0.00073 38.2 9.5 93 265-362 59-199 (662)
301 KOG0024 Sorbitol dehydrogenase 65.2 9.1 0.0002 39.9 4.6 41 263-303 169-212 (354)
302 PRK09880 L-idonate 5-dehydroge 64.9 51 0.0011 33.0 9.9 95 265-379 171-268 (343)
303 KOG2920 Predicted methyltransf 64.4 2.7 5.9E-05 42.7 0.6 36 263-298 116-152 (282)
304 cd08254 hydroxyacyl_CoA_DH 6-h 63.8 70 0.0015 31.2 10.5 88 265-362 167-256 (338)
305 PRK10309 galactitol-1-phosphat 62.1 82 0.0018 31.4 10.8 99 265-380 162-263 (347)
306 PRK10611 chemotaxis methyltran 61.3 14 0.0003 37.5 5.1 40 266-305 118-167 (287)
307 PRK09496 trkA potassium transp 61.2 37 0.00079 35.4 8.4 71 272-350 237-311 (453)
308 PLN02780 ketoreductase/ oxidor 60.6 55 0.0012 33.0 9.3 59 264-322 53-114 (320)
309 KOG2352 Predicted spermine/spe 59.9 40 0.00086 36.8 8.4 142 265-415 297-459 (482)
310 PRK09424 pntA NAD(P) transhydr 59.6 13 0.00028 40.7 4.8 39 265-303 166-206 (509)
311 PF03141 Methyltransf_29: Puta 59.5 7.3 0.00016 42.5 2.9 38 265-302 119-159 (506)
312 cd08283 FDH_like_1 Glutathione 59.4 93 0.002 31.9 10.9 40 265-304 186-228 (386)
313 COG0677 WecC UDP-N-acetyl-D-ma 59.0 7.3 0.00016 41.6 2.7 30 273-302 16-49 (436)
314 PRK07063 short chain dehydroge 58.6 1.1E+02 0.0024 28.9 10.6 79 265-344 8-94 (260)
315 PHA02518 ParA-like protein; Pr 57.8 24 0.00053 32.4 5.7 61 279-347 23-87 (211)
316 KOG3924 Putative protein methy 57.5 23 0.00049 37.9 6.0 92 265-361 194-297 (419)
317 cd08281 liver_ADH_like1 Zinc-d 57.4 97 0.0021 31.5 10.5 88 265-362 193-283 (371)
318 PRK08293 3-hydroxybutyryl-CoA 56.7 82 0.0018 31.2 9.6 41 266-306 5-47 (287)
319 PF02737 3HCDH_N: 3-hydroxyacy 56.7 23 0.00049 33.1 5.3 41 267-307 2-44 (180)
320 PF01210 NAD_Gly3P_dh_N: NAD-d 56.6 49 0.0011 29.9 7.4 85 267-362 2-96 (157)
321 PRK05867 short chain dehydroge 54.2 1.3E+02 0.0028 28.4 10.2 77 265-344 10-94 (253)
322 PRK05854 short chain dehydroge 53.2 1.4E+02 0.003 29.8 10.7 78 266-344 16-101 (313)
323 PRK08340 glucose-1-dehydrogena 53.1 1.2E+02 0.0027 28.7 10.0 74 267-344 3-84 (259)
324 PRK07062 short chain dehydroge 52.3 1.5E+02 0.0033 28.0 10.4 79 265-344 9-95 (265)
325 PLN03154 putative allyl alcoho 52.1 1.3E+02 0.0028 30.5 10.4 96 265-379 160-260 (348)
326 COG4889 Predicted helicase [Ge 50.5 13 0.00029 43.5 3.1 43 265-307 847-900 (1518)
327 cd08294 leukotriene_B4_DH_like 50.3 1.2E+02 0.0027 29.5 9.6 87 265-362 145-234 (329)
328 TIGR00571 dam DNA adenine meth 49.7 15 0.00033 36.4 3.1 33 265-299 27-59 (266)
329 PRK08945 putative oxoacyl-(acy 49.6 1.1E+02 0.0023 28.7 8.8 75 266-344 14-100 (247)
330 PRK08862 short chain dehydroge 49.4 1.6E+02 0.0035 27.9 10.0 78 265-344 6-91 (227)
331 cd08295 double_bond_reductase_ 49.4 1.5E+02 0.0032 29.5 10.2 93 265-378 153-252 (338)
332 PF03807 F420_oxidored: NADP o 49.3 1.3E+02 0.0029 24.1 8.3 73 272-361 5-86 (96)
333 PRK06172 short chain dehydroge 49.3 1.7E+02 0.0036 27.5 10.1 77 265-344 8-92 (253)
334 cd08239 THR_DH_like L-threonin 49.0 1.4E+02 0.0031 29.5 9.9 97 265-379 165-264 (339)
335 PRK07677 short chain dehydroge 49.0 1.6E+02 0.0035 27.7 10.0 76 266-344 3-86 (252)
336 PRK03659 glutathione-regulated 48.8 59 0.0013 36.2 7.8 67 272-348 406-476 (601)
337 PRK09242 tropinone reductase; 48.5 1.4E+02 0.003 28.2 9.4 79 265-344 10-96 (257)
338 PRK07231 fabG 3-ketoacyl-(acyl 48.1 1.3E+02 0.0029 27.9 9.1 75 266-344 7-89 (251)
339 PF05430 Methyltransf_30: S-ad 48.0 94 0.002 27.7 7.6 83 313-420 32-121 (124)
340 TIGR03026 NDP-sugDHase nucleot 47.6 1.1E+02 0.0023 32.1 9.2 32 272-303 6-41 (411)
341 PRK09496 trkA potassium transp 47.5 60 0.0013 33.8 7.3 70 271-349 5-78 (453)
342 PRK06124 gluconate 5-dehydroge 47.3 2.3E+02 0.005 26.6 10.7 77 265-344 12-96 (256)
343 PRK07831 short chain dehydroge 47.1 2E+02 0.0043 27.3 10.3 80 265-344 18-105 (262)
344 PRK07576 short chain dehydroge 47.1 1.6E+02 0.0034 28.3 9.6 77 265-344 10-94 (264)
345 cd08293 PTGR2 Prostaglandin re 47.0 1.6E+02 0.0035 29.0 10.0 87 265-362 156-247 (345)
346 TIGR03201 dearomat_had 6-hydro 46.9 1.9E+02 0.0041 29.0 10.6 102 265-379 168-274 (349)
347 KOG3201 Uncharacterized conser 46.9 55 0.0012 31.4 6.1 95 264-362 30-133 (201)
348 KOG0725 Reductases with broad 46.8 1.1E+02 0.0023 30.6 8.6 73 272-344 18-97 (270)
349 PRK07024 short chain dehydroge 46.6 1.1E+02 0.0023 29.1 8.4 73 267-343 5-85 (257)
350 cd05278 FDH_like Formaldehyde 46.3 2.2E+02 0.0047 28.0 10.7 89 265-362 169-260 (347)
351 TIGR03451 mycoS_dep_FDH mycoth 45.8 1.9E+02 0.0042 29.1 10.5 98 265-379 178-278 (358)
352 PRK06139 short chain dehydroge 45.7 1.8E+02 0.004 29.5 10.3 76 266-344 9-92 (330)
353 TIGR01202 bchC 2-desacetyl-2-h 45.6 1.2E+02 0.0027 29.9 8.9 86 265-380 146-234 (308)
354 PRK06125 short chain dehydroge 44.8 1.5E+02 0.0033 28.0 9.1 75 266-344 9-89 (259)
355 COG0569 TrkA K+ transport syst 44.6 1.1E+02 0.0024 29.6 8.1 74 272-355 6-85 (225)
356 PRK05599 hypothetical protein; 44.1 1.6E+02 0.0035 27.9 9.2 74 267-344 3-85 (246)
357 PLN03209 translocon at the inn 43.8 1.1E+02 0.0023 34.3 8.8 78 263-344 79-167 (576)
358 PF03446 NAD_binding_2: NAD bi 43.6 87 0.0019 28.3 6.9 58 271-346 6-67 (163)
359 COG1062 AdhC Zn-dependent alco 43.2 25 0.00055 37.0 3.6 39 265-303 187-228 (366)
360 PRK06914 short chain dehydroge 43.2 58 0.0012 31.2 6.0 77 266-344 5-89 (280)
361 PRK07102 short chain dehydroge 42.6 59 0.0013 30.5 5.8 76 266-344 3-84 (243)
362 COG1352 CheR Methylase of chem 42.6 37 0.00079 34.3 4.6 39 266-304 99-148 (268)
363 PRK10669 putative cation:proto 42.5 60 0.0013 35.5 6.6 68 272-349 423-494 (558)
364 KOG1208 Dehydrogenases with di 42.5 1.8E+02 0.004 29.8 9.7 58 266-323 39-97 (314)
365 PRK10818 cell division inhibit 42.0 86 0.0019 30.4 7.0 18 279-296 25-42 (270)
366 PRK05876 short chain dehydroge 41.8 2.3E+02 0.005 27.5 10.0 76 266-344 8-91 (275)
367 PRK07097 gluconate 5-dehydroge 41.7 1.8E+02 0.0038 27.8 9.1 78 265-344 11-95 (265)
368 PRK09291 short chain dehydroge 41.1 1.4E+02 0.003 28.0 8.1 71 266-343 4-80 (257)
369 KOG1596 Fibrillarin and relate 41.0 1.4E+02 0.003 30.5 8.2 91 265-362 158-254 (317)
370 TIGR02825 B4_12hDH leukotriene 40.8 3.5E+02 0.0076 26.6 11.3 86 265-362 140-230 (325)
371 PRK06720 hypothetical protein; 40.6 2.9E+02 0.0063 25.3 10.0 78 265-344 17-101 (169)
372 KOG0022 Alcohol dehydrogenase, 40.5 30 0.00066 36.2 3.7 39 265-303 194-235 (375)
373 KOG1207 Diacetyl reductase/L-x 40.3 56 0.0012 31.8 5.1 51 269-324 14-65 (245)
374 cd02042 ParA ParA and ParB of 40.2 48 0.001 27.1 4.3 27 270-296 7-39 (104)
375 PRK03562 glutathione-regulated 39.8 55 0.0012 36.6 5.9 65 272-346 406-474 (621)
376 KOG2360 Proliferation-associat 39.5 27 0.00059 37.2 3.2 77 265-346 215-294 (413)
377 PRK07417 arogenate dehydrogena 39.0 1.7E+02 0.0037 28.9 8.7 28 276-303 14-41 (279)
378 PRK05866 short chain dehydroge 38.7 3.1E+02 0.0068 26.9 10.5 78 264-344 40-125 (293)
379 KOG1099 SAM-dependent methyltr 38.7 39 0.00084 34.0 3.9 67 265-346 43-126 (294)
380 PRK08251 short chain dehydroge 38.1 2.5E+02 0.0054 26.1 9.4 78 266-344 4-89 (248)
381 PRK07478 short chain dehydroge 38.0 3.4E+02 0.0073 25.5 10.3 74 266-344 8-91 (254)
382 cd02037 MRP-like MRP (Multiple 37.9 36 0.00077 30.7 3.4 21 277-297 20-40 (169)
383 PF04989 CmcI: Cephalosporin h 37.9 83 0.0018 30.7 6.1 96 265-362 34-140 (206)
384 PRK08339 short chain dehydroge 37.8 1.1E+02 0.0023 29.5 6.9 78 265-344 9-93 (263)
385 PRK06194 hypothetical protein; 37.4 2.6E+02 0.0057 26.8 9.6 76 266-344 8-91 (287)
386 KOG3178 Hydroxyindole-O-methyl 36.8 1.2E+02 0.0026 31.9 7.3 93 265-379 179-277 (342)
387 TIGR03371 cellulose_yhjQ cellu 36.6 1.1E+02 0.0025 28.8 6.8 21 277-297 22-42 (246)
388 PRK07791 short chain dehydroge 36.5 2.7E+02 0.0058 27.2 9.6 75 265-344 7-100 (286)
389 PRK05650 short chain dehydroge 36.4 2.3E+02 0.0051 27.0 9.0 75 267-344 3-85 (270)
390 cd05188 MDR Medium chain reduc 36.3 3.5E+02 0.0076 25.0 10.9 88 265-362 136-225 (271)
391 PF00106 adh_short: short chai 36.2 2.9E+02 0.0062 23.9 9.6 71 271-345 6-89 (167)
392 PRK08303 short chain dehydroge 35.9 3E+02 0.0064 27.5 9.9 77 265-344 9-103 (305)
393 COG0604 Qor NADPH:quinone redu 35.7 2.4E+02 0.0051 28.8 9.3 88 265-362 144-234 (326)
394 PRK07041 short chain dehydroge 35.5 1.9E+02 0.0042 26.6 8.1 67 273-344 5-77 (230)
395 PRK13705 plasmid-partitioning 35.3 93 0.002 32.7 6.4 26 272-297 116-148 (388)
396 cd08291 ETR_like_1 2-enoyl thi 35.2 2.4E+02 0.0052 27.7 9.1 32 272-303 154-186 (324)
397 PRK14106 murD UDP-N-acetylmura 35.0 1.1E+02 0.0023 32.1 6.9 65 266-344 7-76 (450)
398 PRK06079 enoyl-(acyl carrier p 34.9 2.3E+02 0.005 26.9 8.7 75 265-344 8-91 (252)
399 PRK06949 short chain dehydroge 34.5 2.9E+02 0.0063 25.8 9.2 77 265-344 10-94 (258)
400 PRK15182 Vi polysaccharide bio 34.4 43 0.00094 35.7 3.8 33 271-303 11-46 (425)
401 PRK07326 short chain dehydroge 34.4 1.1E+02 0.0023 28.4 6.1 74 266-343 8-89 (237)
402 cd08261 Zn_ADH7 Alcohol dehydr 34.2 4.4E+02 0.0095 25.9 10.8 89 265-362 161-251 (337)
403 PRK07109 short chain dehydroge 33.9 3.8E+02 0.0083 27.0 10.5 76 266-344 10-93 (334)
404 PRK08267 short chain dehydroge 33.9 1E+02 0.0022 29.2 6.0 73 267-344 4-85 (260)
405 PRK07890 short chain dehydroge 33.5 3.8E+02 0.0082 25.0 9.8 76 266-344 7-90 (258)
406 PRK08594 enoyl-(acyl carrier p 33.5 2.8E+02 0.0061 26.5 9.1 75 265-343 8-94 (257)
407 PRK09186 flagellin modificatio 33.5 4E+02 0.0087 24.8 10.0 78 266-344 6-91 (256)
408 KOG1562 Spermidine synthase [A 33.4 3.2E+02 0.0069 28.6 9.6 76 265-344 123-203 (337)
409 KOG3987 Uncharacterized conser 33.2 9.1 0.0002 37.9 -1.3 100 265-381 114-220 (288)
410 PRK08643 acetoin reductase; Va 33.0 3.3E+02 0.0071 25.6 9.3 70 273-344 10-87 (256)
411 PRK08415 enoyl-(acyl carrier p 33.0 3.7E+02 0.0081 26.2 10.0 77 265-344 6-91 (274)
412 COG0240 GpsA Glycerol-3-phosph 32.8 1.4E+02 0.003 31.2 7.1 72 273-355 8-91 (329)
413 PRK07666 fabG 3-ketoacyl-(acyl 32.8 3.1E+02 0.0067 25.4 9.0 76 266-344 9-92 (239)
414 PRK12429 3-hydroxybutyrate deh 32.7 1.1E+02 0.0023 28.7 5.9 73 270-344 9-89 (258)
415 PRK08703 short chain dehydroge 32.5 2.8E+02 0.006 25.8 8.6 55 265-321 7-65 (239)
416 PRK08589 short chain dehydroge 32.3 4.3E+02 0.0094 25.3 10.2 75 266-344 8-90 (272)
417 PF07757 AdoMet_MTase: Predict 32.3 27 0.00058 31.0 1.6 29 266-294 61-89 (112)
418 PRK08217 fabG 3-ketoacyl-(acyl 32.0 3.7E+02 0.008 24.8 9.4 77 265-344 6-90 (253)
419 COG1701 Uncharacterized protei 32.0 1.2E+02 0.0025 30.2 6.0 90 201-297 95-186 (256)
420 cd08237 ribitol-5-phosphate_DH 31.8 62 0.0013 32.6 4.3 89 265-379 165-258 (341)
421 cd08238 sorbose_phosphate_red 31.7 5.2E+02 0.011 26.7 11.3 91 265-362 177-281 (410)
422 PF10237 N6-adenineMlase: Prob 31.7 49 0.0011 30.9 3.3 19 334-352 84-102 (162)
423 PRK07904 short chain dehydroge 31.7 1.2E+02 0.0026 29.1 6.1 75 265-344 9-95 (253)
424 TIGR03206 benzo_BadH 2-hydroxy 31.1 3.2E+02 0.007 25.3 8.8 77 266-345 5-89 (250)
425 COG2933 Predicted SAM-dependen 31.0 1.1E+02 0.0025 31.4 5.9 70 265-348 213-282 (358)
426 PRK06197 short chain dehydroge 31.0 5.1E+02 0.011 25.3 10.6 79 265-344 17-103 (306)
427 PRK07523 gluconate 5-dehydroge 30.9 4E+02 0.0087 25.0 9.5 77 265-344 11-95 (255)
428 PRK06130 3-hydroxybutyryl-CoA 30.6 4.2E+02 0.0091 26.3 10.0 40 266-305 6-47 (311)
429 PF00072 Response_reg: Respons 30.4 2.8E+02 0.0061 22.0 9.5 66 288-359 1-69 (112)
430 PLN02668 indole-3-acetate carb 30.3 29 0.00063 36.8 1.7 18 266-283 66-83 (386)
431 PRK11730 fadB multifunctional 30.3 86 0.0019 35.7 5.6 42 265-306 314-357 (715)
432 PRK07533 enoyl-(acyl carrier p 30.2 3.8E+02 0.0081 25.6 9.3 75 265-344 11-96 (258)
433 PF04672 Methyltransf_19: S-ad 30.0 67 0.0014 32.5 4.1 59 265-324 70-133 (267)
434 TIGR01968 minD_bact septum sit 29.5 1.7E+02 0.0037 27.6 6.8 18 279-296 24-41 (261)
435 KOG1200 Mitochondrial/plastidi 29.5 1.1E+02 0.0023 30.4 5.2 49 270-321 22-71 (256)
436 COG1192 Soj ATPases involved i 29.5 1.7E+02 0.0037 28.1 6.8 20 278-297 24-44 (259)
437 KOG1205 Predicted dehydrogenas 29.3 2.2E+02 0.0047 29.1 7.7 79 265-343 13-98 (282)
438 PRK07832 short chain dehydroge 29.2 3.4E+02 0.0074 25.9 8.9 69 273-344 8-86 (272)
439 PRK10538 malonic semialdehyde 28.9 3.4E+02 0.0073 25.5 8.6 67 272-343 7-81 (248)
440 PRK07819 3-hydroxybutyryl-CoA 28.4 1.2E+02 0.0025 30.5 5.5 41 266-306 7-49 (286)
441 PRK06200 2,3-dihydroxy-2,3-dih 28.3 5.1E+02 0.011 24.5 9.8 73 266-344 8-88 (263)
442 PF11899 DUF3419: Protein of u 28.3 84 0.0018 33.3 4.7 38 265-303 37-75 (380)
443 PRK15057 UDP-glucose 6-dehydro 28.2 59 0.0013 34.3 3.6 31 273-303 7-40 (388)
444 PRK10904 DNA adenine methylase 27.9 55 0.0012 32.6 3.2 33 265-299 29-61 (271)
445 PRK06035 3-hydroxyacyl-CoA deh 27.8 1.2E+02 0.0027 29.9 5.7 42 266-307 5-48 (291)
446 PRK13394 3-hydroxybutyrate deh 27.7 1.6E+02 0.0035 27.6 6.2 76 266-344 9-92 (262)
447 PF07669 Eco57I: Eco57I restri 27.6 34 0.00074 29.2 1.4 24 336-359 2-43 (106)
448 PRK06505 enoyl-(acyl carrier p 27.6 4.5E+02 0.0098 25.4 9.5 77 265-344 8-93 (271)
449 PRK08277 D-mannonate oxidoredu 27.5 5.5E+02 0.012 24.5 10.3 75 266-343 12-94 (278)
450 PRK08265 short chain dehydroge 27.2 5E+02 0.011 24.7 9.6 73 266-344 8-88 (261)
451 TIGR02415 23BDH acetoin reduct 27.1 4.4E+02 0.0096 24.5 9.0 76 267-345 3-86 (254)
452 PRK07454 short chain dehydroge 26.9 1.7E+02 0.0036 27.3 6.1 76 266-344 8-91 (241)
453 PRK12826 3-ketoacyl-(acyl-carr 26.9 1.6E+02 0.0034 27.3 5.9 76 266-344 8-91 (251)
454 cd08285 NADP_ADH NADP(H)-depen 26.9 6.3E+02 0.014 25.0 11.4 89 265-362 168-259 (351)
455 PRK11064 wecC UDP-N-acetyl-D-m 26.7 73 0.0016 33.7 4.0 30 272-301 9-42 (415)
456 PRK12859 3-ketoacyl-(acyl-carr 26.5 5E+02 0.011 24.6 9.4 78 265-344 7-104 (256)
457 TIGR02822 adh_fam_2 zinc-bindi 26.4 1.1E+02 0.0023 30.7 5.0 88 265-379 167-256 (329)
458 PRK07035 short chain dehydroge 26.3 5.4E+02 0.012 24.0 10.4 77 265-344 9-93 (252)
459 KOG2940 Predicted methyltransf 26.2 64 0.0014 32.6 3.2 68 265-341 74-142 (325)
460 TIGR01425 SRP54_euk signal rec 25.9 1.4E+02 0.0031 32.1 6.0 78 281-359 124-208 (429)
461 PRK07074 short chain dehydroge 25.6 4.5E+02 0.0097 24.6 8.8 73 267-344 5-85 (257)
462 PRK07530 3-hydroxybutyryl-CoA 25.2 1.1E+02 0.0024 30.3 4.7 42 266-307 6-49 (292)
463 COG1004 Ugd Predicted UDP-gluc 25.1 74 0.0016 34.2 3.6 32 272-303 6-41 (414)
464 TIGR01969 minD_arch cell divis 25.0 1.7E+02 0.0037 27.5 5.8 16 281-296 25-40 (251)
465 PRK06482 short chain dehydroge 24.8 3.3E+02 0.0072 26.0 7.9 72 266-343 4-83 (276)
466 PLN02253 xanthoxin dehydrogena 24.8 4.6E+02 0.0099 25.0 8.9 75 265-343 19-101 (280)
467 PRK07814 short chain dehydroge 24.8 5.8E+02 0.013 24.2 9.5 76 265-343 11-94 (263)
468 PF03435 Saccharop_dh: Sacchar 24.8 4.3E+02 0.0093 27.1 9.1 77 268-355 2-87 (386)
469 PRK05872 short chain dehydroge 24.6 5.7E+02 0.012 25.0 9.7 76 265-344 10-93 (296)
470 PRK05808 3-hydroxybutyryl-CoA 24.6 1.4E+02 0.0029 29.5 5.2 38 266-303 5-44 (282)
471 PRK11154 fadJ multifunctional 24.5 1.3E+02 0.0028 34.2 5.7 42 265-306 310-354 (708)
472 PF05575 V_cholerae_RfbT: Vibr 24.5 74 0.0016 30.7 3.1 45 265-309 81-127 (286)
473 PRK05855 short chain dehydroge 24.3 6.2E+02 0.013 26.7 10.5 77 265-344 316-400 (582)
474 PRK08213 gluconate 5-dehydroge 24.3 1.8E+02 0.0039 27.5 5.8 77 265-344 13-97 (259)
475 PRK05717 oxidoreductase; Valid 24.1 2.9E+02 0.0064 26.0 7.3 72 265-344 11-92 (255)
476 cd08233 butanediol_DH_like (2R 24.0 7E+02 0.015 24.7 10.3 81 273-362 183-265 (351)
477 PRK06940 short chain dehydroge 24.0 1.6E+02 0.0034 28.7 5.5 75 266-344 4-84 (275)
478 PRK13761 hypothetical protein; 23.8 2.5E+02 0.0054 28.2 6.6 86 204-297 96-183 (248)
479 TIGR02818 adh_III_F_hyde S-(hy 23.6 1.2E+02 0.0027 30.8 4.9 39 265-303 187-228 (368)
480 COG4084 Uncharacterized protei 23.5 49 0.0011 29.8 1.6 25 112-136 24-48 (135)
481 PRK12748 3-ketoacyl-(acyl-carr 23.5 5.9E+02 0.013 23.9 9.3 77 265-344 6-103 (256)
482 PLN02650 dihydroflavonol-4-red 23.2 2.2E+02 0.0048 28.5 6.5 57 266-323 7-67 (351)
483 PF03686 UPF0146: Uncharacteri 23.2 1.9E+02 0.0041 26.3 5.3 78 265-359 15-94 (127)
484 PRK08177 short chain dehydroge 23.1 2.7E+02 0.0058 25.8 6.7 66 272-344 8-79 (225)
485 PRK05786 fabG 3-ketoacyl-(acyl 23.0 2.7E+02 0.0059 25.6 6.7 77 265-345 6-90 (238)
486 PRK07453 protochlorophyllide o 23.0 6.7E+02 0.015 24.7 9.9 75 266-343 8-90 (322)
487 PRK06603 enoyl-(acyl carrier p 22.9 6.7E+02 0.014 23.9 9.6 77 265-344 9-94 (260)
488 PLN02740 Alcohol dehydrogenase 22.8 1.2E+02 0.0026 31.0 4.6 39 265-303 200-241 (381)
489 PRK09072 short chain dehydroge 22.8 1.8E+02 0.0038 27.7 5.5 74 267-344 8-88 (263)
490 PRK12384 sorbitol-6-phosphate 22.7 6.4E+02 0.014 23.6 10.5 78 266-344 4-89 (259)
491 PRK07889 enoyl-(acyl carrier p 22.5 4.4E+02 0.0094 25.2 8.2 75 265-344 8-93 (256)
492 TIGR03366 HpnZ_proposed putati 22.4 1.3E+02 0.0027 29.3 4.5 94 265-378 122-219 (280)
493 PRK07774 short chain dehydroge 22.3 6.3E+02 0.014 23.4 9.5 76 266-344 8-91 (250)
494 PRK12939 short chain dehydroge 22.3 2.2E+02 0.0047 26.4 5.9 75 266-343 9-91 (250)
495 PRK06181 short chain dehydroge 22.1 2.2E+02 0.0047 26.9 5.9 76 266-344 3-86 (263)
496 cd08230 glucose_DH Glucose deh 21.8 1.5E+02 0.0032 29.8 5.0 94 265-380 174-272 (355)
497 TIGR02441 fa_ox_alpha_mit fatt 21.6 1.4E+02 0.0031 34.2 5.2 43 265-307 336-380 (737)
498 TIGR00345 arsA arsenite-activa 21.5 2.2E+02 0.0048 28.4 6.1 14 335-348 111-124 (284)
499 PRK07067 sorbitol dehydrogenas 21.4 5.9E+02 0.013 23.9 8.8 73 266-344 8-88 (257)
500 TIGR02437 FadB fatty oxidation 21.0 1.6E+02 0.0035 33.6 5.5 42 265-306 314-357 (714)
No 1
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=100.00 E-value=1.1e-51 Score=420.00 Aligned_cols=266 Identities=44% Similarity=0.655 Sum_probs=226.5
Q ss_pred cceEEEEEeeccccCCCCHHHHHHccCCCCCCCCceeEEECcEEEEEeCCCCcccHHHHHHHHHHhcCCCceEEEEcccc
Q 045638 162 ECFQLEVCNVDEAFDFHSYVQILEALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDA 241 (437)
Q Consensus 162 ~~~elv~~~l~l~Y~~~~~~eIL~~iLP~~~~ipssfd~iGdIa~lnl~~e~~p~k~~I~evLl~k~~P~iktVv~K~~~ 241 (437)
..+++++++++|+|+||+++|||+++||++.+.|+||.++|||||+|+.++.+|++..||+++++|+ |.++||++|++.
T Consensus 115 ~~~~~i~~~~~L~yE~w~~keilRavlpe~e~~~s~ft~~GhIaHLNl~~e~lpfk~iI~~Vi~DK~-n~~ktvv~K~~~ 193 (495)
T KOG2078|consen 115 PELEIIPHELELTYEYWKAKEILRAVLPEEEDVPSSFTITGHIAHLNLRDEQLPFKRIIGQVIYDKN-NLIKTVVNKIGR 193 (495)
T ss_pred ccceeeccccccchhhhhHHHHHHhhCcccccccccceeeeeeEEeeccchhccHHHHHHHHhhccC-CCceEeeecccc
Confidence 3689999999999999999999999999998999999999999999999999999999999999999 999999999999
Q ss_pred ccccccceeeeccce-------eeec--cc-----------------------c--cceEEeecCccchhHHHHhccCCE
Q 045638 242 IHNDYRTMQLEGDAY-------MCES--LF-----------------------F--VQMTGDVFAGVGPISIPAAKIVKR 287 (437)
Q Consensus 242 I~gefR~~~levLaG-------v~E~--~F-----------------------F--~e~VLDlFAGvG~FaI~aAkkg~~ 287 (437)
|++.||++++++||| ++|+ +| | +++|+|+|||+|||++||++++|+
T Consensus 194 Itn~yR~~~~eviAGe~n~vtevre~~~~Fk~DfskVYWnsRL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~cr 273 (495)
T KOG2078|consen 194 ITNRYRNFKLEVIAGERNLVTEVREGGERFKFDFSKVYWNSRLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCR 273 (495)
T ss_pred hhhhhcccCceEecCCCceEEEEecCCeeEEEecceEEeeccchhHHHHHhhccCCcchhhhhhcCcCccccchhhcCcE
Confidence 999999999999999 4555 44 2 399999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccHHHHHHHH-------HHh-----------------hc--------C
Q 045638 288 VYANDLNPYAVDYLERNSVLNKLEKK-IEVFNMDGRRFIDAM-------FAS-----------------QK--------A 334 (437)
Q Consensus 288 V~A~DlNP~Ave~L~~NaklNkv~~~-V~vi~gDa~~~l~~~-------~~~-----------------~~--------~ 334 (437)
|+|||+||+|++||+.|+++|+++.. |+++|+||.+|+++- .+. +. .
T Consensus 274 V~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr~e~~~~~~~I~~~v~~kl~k~~~t~~~~~d~~p~~~~~~~ 353 (495)
T KOG2078|consen 274 VYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLRQEPLPYKRLIADEVLDKLMKKIGTVVNKIDRIPQPFRTMQ 353 (495)
T ss_pred EEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhhcCCchhhhHHHHHHhhhhhhhhcccccccccCCCcccccc
Confidence 99999999999999999999999865 999999999999521 000 00 1
Q ss_pred CcccEEEEcCCcChHHHHHHHHHHhcC-CCCCCCCCccEEEEEeccC---CCCCccc-HHHHHHHHHHhc---ccceeEE
Q 045638 335 HKITQVVMNLPNDATEFLDAFRGIYRD-RPEDVKFTFPKTHVYGFSK---ARDPEFD-FHERIRIALAEV---AVNVEMR 406 (437)
Q Consensus 335 ~~fD~VImnpP~~a~eFLdaa~~llk~-~~~~~~~~~p~IHvY~F~k---~~d~~~d-~~eRI~~~L~~~---~~~v~vr 406 (437)
...+|++||+|.++.+||.+|...+.. ++.. +..+|+||||||++ ....-.+ +..|+...++-. +..+.+|
T Consensus 354 ~~i~hvvmnLPa~avefL~~F~~~la~k~~~d-~~~lplvhcy~F~k~~~~~~s~e~~V~ar~~~~~kv~~e~~~~~~~h 432 (495)
T KOG2078|consen 354 LHIVHVVMNLPASAVEFLLRFSGDLARKGPID-KTPLPLVHCYCFSKLFCDVSSTEDLVTARIVAALKVFAEDGALVSLH 432 (495)
T ss_pred hhhhhhhccChHHHHHHHHHhHHHHhccCccc-cccceeEEEEEEeecccCCCchHHHHHHHHHhhcceeeccccceeee
Confidence 125799999999999999999999987 3222 23578999999999 3322223 455554433222 2345899
Q ss_pred EeEEecCCCcEEEEEEEEcccee
Q 045638 407 RVRLVAPGKWMLFASFVLPESVV 429 (437)
Q Consensus 407 ~VR~VAP~k~m~cisFrLp~~v~ 429 (437)
.||+|||+|.|||++|++|..++
T Consensus 433 ~VR~VapnK~M~ca~~~lp~~~l 455 (495)
T KOG2078|consen 433 LVRKVAPNKEMYCASFQLPANVL 455 (495)
T ss_pred eeeccCCCcccchhhhhcHHHHh
Confidence 99999999999999999999887
No 2
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=2.3e-46 Score=378.04 Aligned_cols=233 Identities=33% Similarity=0.504 Sum_probs=207.0
Q ss_pred CCHHHHHHccCCCCC-C--CCceeEEECcEEEEEeCCCCcccHHHHHHHHHHhcCCCceEEEEccccccccccceeeecc
Q 045638 178 HSYVQILEALLPKGM-I--IPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEGD 254 (437)
Q Consensus 178 ~~~~eIL~~iLP~~~-~--ipssfd~iGdIa~lnl~~e~~p~k~~I~evLl~k~~P~iktVv~K~~~I~gefR~~~levL 254 (437)
.+++++++..+|.+. . +|++|+++||||+++++++..+|+..|++++++.+ |++++|+.+.+.+.|+||++.+++|
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~p~~~~iiGdIai~~~~~e~~~~~~~i~~ai~~~~-~~vk~V~~k~~~v~G~~R~~~le~l 145 (341)
T COG2520 67 ENLKEILSDRLPEEVLRELVPSSFDIIGDIAILSIPDELEPYKREIAEAILRVH-GKVKAVLLKEGPVAGEFRVPRLEVL 145 (341)
T ss_pred hHHHHHhhccchhhhhhhcCCcceEEEccEEEEeCCcccchHHHHHHHHHHhhc-cCeeEEEEecCccCCeEeccceEEe
Confidence 457899998888765 2 89999999999999999998889999999999998 8999999999989999999999999
Q ss_pred ce-------eeec--cc--------c-----------------cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHH
Q 045638 255 AY-------MCES--LF--------F-----------------VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVD 299 (437)
Q Consensus 255 aG-------v~E~--~F--------F-----------------~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave 299 (437)
|| ++|| +| | +++|+|||||+|||||++|++|+ .|+|+|+||+|++
T Consensus 146 aGe~~teTihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~ 225 (341)
T COG2520 146 AGERRTETIHRENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVE 225 (341)
T ss_pred ecCCCceEEEecCCEEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHH
Confidence 99 6788 44 3 39999999999999999999998 5999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 300 YLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 300 ~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
+|++|+++|++.+.+++++||++++..+. ..+|+|+||+|.++.+|++.++.+++++ ++||+|+|+
T Consensus 226 ~L~eNi~LN~v~~~v~~i~gD~rev~~~~------~~aDrIim~~p~~a~~fl~~A~~~~k~~--------g~iHyy~~~ 291 (341)
T COG2520 226 YLKENIRLNKVEGRVEPILGDAREVAPEL------GVADRIIMGLPKSAHEFLPLALELLKDG--------GIIHYYEFV 291 (341)
T ss_pred HHHHHHHhcCccceeeEEeccHHHhhhcc------ccCCEEEeCCCCcchhhHHHHHHHhhcC--------cEEEEEecc
Confidence 99999999999988999999999998642 5799999999999999999999999986 799999999
Q ss_pred CCCCCcccHHHHHHHHHHhc---ccceeEEEeEEecCCCcEEEEEEEEc
Q 045638 380 KARDPEFDFHERIRIALAEV---AVNVEMRRVRLVAPGKWMLFASFVLP 425 (437)
Q Consensus 380 k~~d~~~d~~eRI~~~L~~~---~~~v~vr~VR~VAP~k~m~cisFrLp 425 (437)
++++.......++....... ......|.|++|||++||||+|+++.
T Consensus 292 ~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~hv~vd~~v~ 340 (341)
T COG2520 292 PEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYHVVVDLRVL 340 (341)
T ss_pred chhhcccchHHHHHHHHhhccCcceEEEEEEecccCCCeeEEEEEEEec
Confidence 98775443556666555443 34568999999999999999999975
No 3
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=100.00 E-value=6.7e-39 Score=303.45 Aligned_cols=164 Identities=48% Similarity=0.731 Sum_probs=134.7
Q ss_pred ceeEEECcEEEEEeCCCCcccHHHHHHHHHHhcCCCceEEEEccccccccccceeeeccce-------eeec--cc----
Q 045638 196 SAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEGDAY-------MCES--LF---- 262 (437)
Q Consensus 196 ssfd~iGdIa~lnl~~e~~p~k~~I~evLl~k~~P~iktVv~K~~~I~gefR~~~levLaG-------v~E~--~F---- 262 (437)
+|||++|||||++++++..||++.|+++|++++ |++|||++|.+.++|+||++++++|+| ++|+ +|
T Consensus 1 t~~~~iG~Iaiv~~~~~~~~~~~~I~~~i~~~~-~~vktV~~k~~~v~g~~R~~~~~~LaG~~~~~t~~~E~G~~f~~D~ 79 (200)
T PF02475_consen 1 TSFEIIGDIAIVNLPEELEPYKELIAEAILEKN-PNVKTVYNKIGIVEGEFRTPDLEVLAGEPRTETIHKENGIRFKVDL 79 (200)
T ss_dssp -EEEEETTEEEEEB-CCCCHHHHHHHHHHHHHC--T-SEEEEE-S-SBTTTTB--EEEEEES--SEEEEEETTEEEEEET
T ss_pred CceEEEccEEEEeCCcccchHHHHHHHHHHHhc-cCceEEEEecCcCCCCcccccEEEEeCCCceEEEEEeCCEEEEEcc
Confidence 699999999999999999999999999999998 899999999998999999999999999 6788 44
Q ss_pred ----c-----------------cceEEeecCccchhHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 045638 263 ----F-----------------VQMTGDVFAGVGPISIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM 319 (437)
Q Consensus 263 ----F-----------------~e~VLDlFAGvG~FaI~aAk--kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~g 319 (437)
| +++|+|||||+|+|+|++|+ +++.|+|+|+||+|+++|++|+++|++++++.++++
T Consensus 80 ~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~ 159 (200)
T PF02475_consen 80 SKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVING 159 (200)
T ss_dssp TTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES
T ss_pred ceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcC
Confidence 2 29999999999999999999 677999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhcCCcccEEEEcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEE
Q 045638 320 DGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHV 375 (437)
Q Consensus 320 Da~~~l~~~~~~~~~~~fD~VImnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHv 375 (437)
|++++++ ...+|+|+||+|.++.+||++++.+++++ +++|+
T Consensus 160 D~~~~~~-------~~~~drvim~lp~~~~~fl~~~~~~~~~~--------g~ihy 200 (200)
T PF02475_consen 160 DAREFLP-------EGKFDRVIMNLPESSLEFLDAALSLLKEG--------GIIHY 200 (200)
T ss_dssp -GGG----------TT-EEEEEE--TSSGGGGHHHHHHHEEEE--------EEEEE
T ss_pred CHHHhcC-------ccccCEEEECChHHHHHHHHHHHHHhcCC--------cEEEC
Confidence 9999985 35799999999999999999999999986 67775
No 4
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=99.88 E-value=1.2e-22 Score=200.95 Aligned_cols=218 Identities=17% Similarity=0.184 Sum_probs=166.6
Q ss_pred CCCceeEEECcEEEEEeCCCCcccHHHHHHHHHHhcCC--CceEEEEccccc-cccccceeeeccce------eeec--c
Q 045638 193 IIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKP--KIQTVVNKIDAI-HNDYRTMQLEGDAY------MCES--L 261 (437)
Q Consensus 193 ~ipssfd~iGdIa~lnl~~e~~p~k~~I~evLl~k~~P--~iktVv~K~~~I-~gefR~~~levLaG------v~E~--~ 261 (437)
++|.+|+++|++++++.+....|-.+.|++.+.....+ ++. .+.+...+ +..-|++.+++|+| +++| .
T Consensus 89 ~LP~kw~~~g~lvl~~~~sF~~~~W~~~~~e~w~~va~sl~~~-r~ar~~~vs~~~~R~~~v~~L~Gd~gWV~~v~NGI~ 167 (351)
T KOG1227|consen 89 DLPLKWEIYGPLVLFPVNSFNHPIWQKIFQELWSVVAKSLGVS-RLARNRLVSHLARRPPNVQPLYGDLGWVKHVQNGIT 167 (351)
T ss_pred hccccceecCCEEEEeccccCChhHHHHHHHHHHhhhhccchh-hhhhccccCccccCCCccccccccccceeehhcCeE
Confidence 48999999999999999888788888899988875422 111 12222333 34468999999999 4566 2
Q ss_pred c--------c-----------------cceEEeecCccchhHHHH-hccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 045638 262 F--------F-----------------VQMTGDVFAGVGPISIPA-AKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKI 314 (437)
Q Consensus 262 F--------F-----------------~e~VLDlFAGvG~FaI~a-Akkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V 314 (437)
| | +++|+|||||+|||++|. .+.|+ .|+|+|+||+|++.|++|++.|++.++.
T Consensus 168 ~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~ 247 (351)
T KOG1227|consen 168 QIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRC 247 (351)
T ss_pred EEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHH
Confidence 2 2 289999999999999954 45676 9999999999999999999999998888
Q ss_pred EEEEccHHHHHHHHHHhhcCCcccEEEEcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcc---cHHHH
Q 045638 315 EVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEF---DFHER 391 (437)
Q Consensus 315 ~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~---d~~eR 391 (437)
.++.+|.+..- +..++|||.+++-.++.+-+..|+++++++ +| +++|+|+.++.++... +-...
T Consensus 248 ~i~~gd~R~~~-------~~~~AdrVnLGLlPSse~~W~~A~k~Lk~e--gg----silHIHenV~~s~~~~~~a~~v~k 314 (351)
T KOG1227|consen 248 RITEGDNRNPK-------PRLRADRVNLGLLPSSEQGWPTAIKALKPE--GG----SILHIHENVKDSDIKIVEADGVNK 314 (351)
T ss_pred HhhhccccccC-------ccccchheeeccccccccchHHHHHHhhhc--CC----cEEEEeccccccccccccccchhh
Confidence 88888888653 256799999999888999999999999986 33 4999999999776321 11222
Q ss_pred HHHHHHhcccceeEEEeEEecCCCcEEEEEEEE
Q 045638 392 IRIALAEVAVNVEMRRVRLVAPGKWMLFASFVL 424 (437)
Q Consensus 392 I~~~L~~~~~~v~vr~VR~VAP~k~m~cisFrL 424 (437)
....+...........+++++|+++|.|.+...
T Consensus 315 t~~~~~~k~~~~~tN~iks~~~r~s~~~~~s~v 347 (351)
T KOG1227|consen 315 TIKDIANKGVNSKTNRIKSFAPRISHVCVDSDV 347 (351)
T ss_pred HHHHHHhccCceeehhhccCCCccceeeeccee
Confidence 222222233445678899999999999998654
No 5
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.80 E-value=3.5e-18 Score=177.02 Aligned_cols=190 Identities=15% Similarity=0.119 Sum_probs=137.9
Q ss_pred eeEEECcEEEEEeCCC-CcccHHHHHHHHHHhcCCCceEEEEcccccccccc--ceeeeccce--------eeec--cc-
Q 045638 197 AFETVGHIAHLNLREE-HQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYR--TMQLEGDAY--------MCES--LF- 262 (437)
Q Consensus 197 sfd~iGdIa~lnl~~e-~~p~k~~I~evLl~k~~P~iktVv~K~~~I~gefR--~~~levLaG--------v~E~--~F- 262 (437)
--|+|||++++|+.+. +..++..|.++|.+.+ | .++|+.+.+.....-. .....+++| ++|| +|
T Consensus 116 iVD~y~d~~vvq~~~~~~~~~~~~i~~aL~~~~-~-~~~i~~r~~~~~r~~egl~~~~~~~~G~~~~~~~~v~E~g~~f~ 193 (396)
T PRK15128 116 TIDRFGNFLVLQLLSAGAEYQRAALISALQTLY-P-ECAIYDRSDVAVRKKEGMELTQGPVTGELPPALLPIEEHGMKLL 193 (396)
T ss_pred EEEEECCEEEEEECcHHHHHhHHHHHHHHHHHc-C-CcEEEEcCcchhHHhcCCCccceEEecCCCCccEEEEECCEEEE
Confidence 5689999999999876 4668999999999987 3 4688877443211100 112334555 4576 44
Q ss_pred -----------c---------------cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcE
Q 045638 263 -----------F---------------VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLE-KKI 314 (437)
Q Consensus 263 -----------F---------------~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~-~~V 314 (437)
| +.+|||+|||+|.|++.++..|+ +|+++|+|+.|++.+++|+++|+++ +++
T Consensus 194 vdl~~g~ktG~flDqr~~R~~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v 273 (396)
T PRK15128 194 VDIQGGHKTGYYLDQRDSRLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKA 273 (396)
T ss_pred EecccccccCcChhhHHHHHHHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcE
Confidence 2 26899999999999999888776 9999999999999999999999996 479
Q ss_pred EEEEccHHHHHHHHHHhhcCCcccEEEEcCCcChH-------------HHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 045638 315 EVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDAT-------------EFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKA 381 (437)
Q Consensus 315 ~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a~-------------eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~ 381 (437)
+++++|+++++..+.. ...+||.||+|||+.+. +++..+.++++++ |++..++.+..
T Consensus 274 ~~i~~D~~~~l~~~~~--~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~g--------G~lv~~scs~~ 343 (396)
T PRK15128 274 EFVRDDVFKLLRTYRD--RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPG--------GILLTFSCSGL 343 (396)
T ss_pred EEEEccHHHHHHHHHh--cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCC--------eEEEEEeCCCc
Confidence 9999999999865432 24579999999998431 2233456777765 67777666554
Q ss_pred CCCcccHHHHHHHHHHhc
Q 045638 382 RDPEFDFHERIRIALAEV 399 (437)
Q Consensus 382 ~d~~~d~~eRI~~~L~~~ 399 (437)
-+ ..++.+-+.+.+...
T Consensus 344 ~~-~~~f~~~v~~aa~~~ 360 (396)
T PRK15128 344 MT-SDLFQKIIADAAIDA 360 (396)
T ss_pred CC-HHHHHHHHHHHHHHc
Confidence 33 235566665555443
No 6
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.80 E-value=3.1e-18 Score=176.96 Aligned_cols=192 Identities=19% Similarity=0.141 Sum_probs=140.0
Q ss_pred ceeEEECcEEEEEeCCC-CcccHHHHHHHHHHhcCCCceEEEEccccc-ccccccee-eeccce--------eeec--cc
Q 045638 196 SAFETVGHIAHLNLREE-HQPFKYLIAKVVLDKNKPKIQTVVNKIDAI-HNDYRTMQ-LEGDAY--------MCES--LF 262 (437)
Q Consensus 196 ssfd~iGdIa~lnl~~e-~~p~k~~I~evLl~k~~P~iktVv~K~~~I-~gefR~~~-levLaG--------v~E~--~F 262 (437)
---|++||++|+|+... .++.++.|.+++.+.. +.+++|+.+.+.. .+..|... -..+.| +.|+ +|
T Consensus 111 l~vD~ygd~~vvq~~s~~~~~~~~~i~~~l~~~~-~~~~~v~e~s~~~~r~~~~~~~~~~~~~g~~~~~~~~i~E~g~kf 189 (393)
T COG1092 111 LTVDRYGDYLVVQLYSAGIEIFKEAILEALAEAF-PAPKGVYEKSDVRLRRREGLKGRSQYLKGEEAPEEVVIEENGVKF 189 (393)
T ss_pred eEEEecCCEEEEEecccccccchHHHHHHHHHhh-cccceeEeccchhhhhhhcccccccccccccCCCcEEEEeCCeEE
Confidence 35789999999999775 5778899999999998 7789999874221 11111111 122333 4565 33
Q ss_pred ------------c---------------cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCC-Cc
Q 045638 263 ------------F---------------VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLE-KK 313 (437)
Q Consensus 263 ------------F---------------~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~-~~ 313 (437)
| +++|||+||+||.||+.||+.|+ .|++||++..|++++++|+++|+++ ++
T Consensus 190 ~v~~~~g~kTGfFlDqR~~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~ 269 (393)
T COG1092 190 LVDLVDGLKTGFFLDQRDNRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDR 269 (393)
T ss_pred EEecCCcccceeeHHhHHHHHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccc
Confidence 2 27899999999999999999999 9999999999999999999999995 57
Q ss_pred EEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcChH-------------HHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 314 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDAT-------------EFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 314 V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a~-------------eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
+.++++|++++++.... .+.+||+||+|||..+. ..+..++++++++ |++-....+.
T Consensus 270 ~~~i~~Dvf~~l~~~~~--~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg--------G~l~~~s~~~ 339 (393)
T COG1092 270 HRFIVGDVFKWLRKAER--RGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG--------GTLVTSSCSR 339 (393)
T ss_pred eeeehhhHHHHHHHHHh--cCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCC--------CEEEEEecCC
Confidence 89999999999987653 35689999999998541 4466677777775 4443333332
Q ss_pred CCCCcccHHHHHHHHHHhc
Q 045638 381 ARDPEFDFHERIRIALAEV 399 (437)
Q Consensus 381 ~~d~~~d~~eRI~~~L~~~ 399 (437)
.-. ...+.+-|.+.+...
T Consensus 340 ~~~-~~~f~~~i~~a~~~~ 357 (393)
T COG1092 340 HFS-SDLFLEIIARAAAAA 357 (393)
T ss_pred ccC-HHHHHHHHHHHHHhc
Confidence 222 234555565555443
No 7
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=5.8e-16 Score=162.12 Aligned_cols=183 Identities=23% Similarity=0.279 Sum_probs=135.3
Q ss_pred cccHHHHHHHHHHhcCCCceEEEEccccc-cccccceeeeccce---eeec--------cccc-----------------
Q 045638 214 QPFKYLIAKVVLDKNKPKIQTVVNKIDAI-HNDYRTMQLEGDAY---MCES--------LFFV----------------- 264 (437)
Q Consensus 214 ~p~k~~I~evLl~k~~P~iktVv~K~~~I-~gefR~~~levLaG---v~E~--------~FF~----------------- 264 (437)
.|......+.+++.+ |.+.+++..++.- .+...+.+..+++| ++|. .|||
T Consensus 211 ~~~~~~~~~~~~~~~-~~~~~i~~~i~~~~~~~i~g~~~~~~~~~~~i~e~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~ 289 (432)
T COG2265 211 LPELEQALRELLEAF-PEIKGIVQNINRAKTNVIEGDEEITLYGLESIREGVSFQISPRSFFQVNPAVAEKLYETALEWL 289 (432)
T ss_pred chhHHHHHHHHHHhh-hhcceEEEEecCCCCceEEcceeEEEecccccccceEEEeCCCCceecCHHHHHHHHHHHHHHH
Confidence 555778888889888 8888888877654 44455556667777 3442 4542
Q ss_pred -----ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccE
Q 045638 265 -----QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 -----e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
++|+|+|||+|.||+++|++..+|+|+|++|+|++.+++||+.|+++ |++++.+|+.+++.... ....+|.
T Consensus 290 ~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~~~~~---~~~~~d~ 365 (432)
T COG2265 290 ELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFTPAWW---EGYKPDV 365 (432)
T ss_pred hhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHhhhcc---ccCCCCE
Confidence 78999999999999999999999999999999999999999999999 59999999999987542 2457899
Q ss_pred EEEcCCcCh--HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHHHHHHhcccceeEEEeEEec--CCC
Q 045638 340 VVMNLPNDA--TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIRIALAEVAVNVEMRRVRLVA--PGK 415 (437)
Q Consensus 340 VImnpP~~a--~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~~~L~~~~~~v~vr~VR~VA--P~k 415 (437)
||.|||+.. .++++.+.+.--. -+|++-|.... ..|=-..|.+. ...+.+|.-+. |+.
T Consensus 366 VvvDPPR~G~~~~~lk~l~~~~p~---------~IvYVSCNP~T-------laRDl~~L~~~--gy~i~~v~~~DmFP~T 427 (432)
T COG2265 366 VVVDPPRAGADREVLKQLAKLKPK---------RIVYVSCNPAT-------LARDLAILAST--GYEIERVQPFDMFPHT 427 (432)
T ss_pred EEECCCCCCCCHHHHHHHHhcCCC---------cEEEEeCCHHH-------HHHHHHHHHhC--CeEEEEEEEeccCCCc
Confidence 999999954 3777776664333 37898886331 11111222222 23367777766 888
Q ss_pred cEEE
Q 045638 416 WMLF 419 (437)
Q Consensus 416 ~m~c 419 (437)
.|+.
T Consensus 428 ~HvE 431 (432)
T COG2265 428 HHVE 431 (432)
T ss_pred cccC
Confidence 7764
No 8
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.70 E-value=5.3e-16 Score=154.65 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=112.7
Q ss_pred eeEEECcEEEEEeCCC-CcccHHHHHHHHHHhcCCCceEEEEccc--cc--cccc-cceeeeccce-------eeec--c
Q 045638 197 AFETVGHIAHLNLREE-HQPFKYLIAKVVLDKNKPKIQTVVNKID--AI--HNDY-RTMQLEGDAY-------MCES--L 261 (437)
Q Consensus 197 sfd~iGdIa~lnl~~e-~~p~k~~I~evLl~k~~P~iktVv~K~~--~I--~gef-R~~~levLaG-------v~E~--~ 261 (437)
--|++|+++++++... ...++..|.++|.... + +.++.... .+ ...+ .....+++.| +.|+ .
T Consensus 18 ~VD~y~~~lvvq~~~~~~~~~~~~l~~~L~~l~-~--~~~~~~~~~~~~~~~~r~~~~~~~~~l~G~~~~~~~v~E~gl~ 94 (286)
T PF10672_consen 18 TVDRYGDVLVVQLYSEGMERFLDELREALEALI-P--PGIYEKKQGRSIVLRKREKEGAPSEVLYGEPPEFFTVEENGLK 94 (286)
T ss_dssp EEEEETTEEEEEE-SHHHHCTHHHHHHHHHHHH-C--CCECEEEEGGGCCCCHHTTTT-EEEEEESS-SSEEEEEETTEE
T ss_pred EEEEECCEEEEEECCcChHHHHHHHHHHHHHHh-h--cceeeeccccceeehhhhccCCCceEEecCCCCceEEEECCEE
Confidence 4589999999999765 4678888999988765 2 22332211 11 1111 1234556777 5677 4
Q ss_pred c------------c---------------cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCC-C
Q 045638 262 F------------F---------------VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLE-K 312 (437)
Q Consensus 262 F------------F---------------~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~-~ 312 (437)
| | +.+|||+||.+|.||+.||+.|+ .|+++|.+..|++++++|+++|+++ +
T Consensus 95 f~v~l~~gqktGlFlDqR~nR~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~ 174 (286)
T PF10672_consen 95 FRVDLTDGQKTGLFLDQRENRKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLD 174 (286)
T ss_dssp EEEESSSSSSTSS-GGGHHHHHHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCT
T ss_pred EEEEcCCCCcceEcHHHHhhHHHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 4 2 28999999999999999999987 8999999999999999999999986 6
Q ss_pred cEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcCh----------HHHHHHHHHHhcCC
Q 045638 313 KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA----------TEFLDAFRGIYRDR 362 (437)
Q Consensus 313 ~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a----------~eFLdaa~~llk~~ 362 (437)
+++++++|+++++..+. ...+||.||+|||..+ .+.+..+.++++++
T Consensus 175 ~~~~~~~Dvf~~l~~~~---~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~g 231 (286)
T PF10672_consen 175 RHRFIQGDVFKFLKRLK---KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPG 231 (286)
T ss_dssp CEEEEES-HHHHHHHHH---HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEE
T ss_pred ceEEEecCHHHHHHHHh---cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 89999999999987643 2468999999999743 24456666777765
No 9
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.65 E-value=9e-15 Score=161.29 Aligned_cols=168 Identities=14% Similarity=0.100 Sum_probs=123.7
Q ss_pred ceeEEECcEEEEEeCCC--------CcccHHHHHHHHHHhcCCCceEEEEccccccccccceeeeccce-------eeec
Q 045638 196 SAFETVGHIAHLNLREE--------HQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEGDAY-------MCES 260 (437)
Q Consensus 196 ssfd~iGdIa~lnl~~e--------~~p~k~~I~evLl~k~~P~iktVv~K~~~I~gefR~~~levLaG-------v~E~ 260 (437)
---|+|||++++|+... ...++..|.++|.+......++|+.|........ .+.+.+ | +.|+
T Consensus 430 l~vD~y~~~~vvq~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~i~~k~~~~~~g~--~~~~~~-g~~~~~~~v~e~ 506 (702)
T PRK11783 430 VAVDRYGDWVVVQEYAAPKTIDEEKARQRLFDALAATPEVLGIPPNKVVLKTRERQKGK--NQYQKL-AEKGEFLEVTEY 506 (702)
T ss_pred eEEEEECCEEEEEECCCccccCHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeehhccCc--chhhhc-cCCCceEEEEEC
Confidence 47899999999999754 3457888999988772113478888733211100 011111 2 4555
Q ss_pred --cc------------c---------------cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCC
Q 045638 261 --LF------------F---------------VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKL 310 (437)
Q Consensus 261 --~F------------F---------------~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv 310 (437)
+| | +..|||+|||+|.||+.+|+.|+ .|+++|+|+.|++.+++|+++|++
T Consensus 507 g~~f~v~~~~~~~tG~flDqr~~R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~ 586 (702)
T PRK11783 507 GAKLLVNLTDYLDTGLFLDHRPTRRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGL 586 (702)
T ss_pred CEEEEEEcCCCCcceECHHHHHHHHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 33 2 27899999999999999999887 799999999999999999999999
Q ss_pred C-CcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcCh---------------HHHHHHHHHHhcCCCCCCCCCccEEE
Q 045638 311 E-KKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA---------------TEFLDAFRGIYRDRPEDVKFTFPKTH 374 (437)
Q Consensus 311 ~-~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a---------------~eFLdaa~~llk~~~~~~~~~~p~IH 374 (437)
+ ++++++++|+.+++... ..+||.||+|||+.+ .+.+..+.++++++ |++.
T Consensus 587 ~~~~v~~i~~D~~~~l~~~-----~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g--------G~l~ 653 (702)
T PRK11783 587 SGRQHRLIQADCLAWLKEA-----REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPG--------GTLY 653 (702)
T ss_pred CccceEEEEccHHHHHHHc-----CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCC--------CEEE
Confidence 7 68999999999987542 357999999999743 24566777788776 5765
Q ss_pred EEecc
Q 045638 375 VYGFS 379 (437)
Q Consensus 375 vY~F~ 379 (437)
+.+-.
T Consensus 654 ~~~~~ 658 (702)
T PRK11783 654 FSNNK 658 (702)
T ss_pred EEeCC
Confidence 54433
No 10
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.64 E-value=1.9e-14 Score=149.72 Aligned_cols=153 Identities=20% Similarity=0.270 Sum_probs=113.0
Q ss_pred ECcEEEEEe-CCCCcccHHHHHHHHHHhcCCCceEEEEccccc-cccccceeeeccce---eeec-----------ccc-
Q 045638 201 VGHIAHLNL-REEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAI-HNDYRTMQLEGDAY---MCES-----------LFF- 263 (437)
Q Consensus 201 iGdIa~lnl-~~e~~p~k~~I~evLl~k~~P~iktVv~K~~~I-~gefR~~~levLaG---v~E~-----------~FF- 263 (437)
.|+++++-+ .....+....|++.+.+.+ |.+++|+...+.. .+.+...+.++++| +.|. .||
T Consensus 193 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~~v~~v~~~~~~~~~~~~~g~~~~~l~G~~~~~~~~~~~~~~~~~~~F~Q 271 (431)
T TIGR00479 193 TGELLLVLRTALEGFPHKEELALELQERY-PDVKSICQNINPEKTNVIFGEETEQIAGEGPIYEKSGDLSFSLSARDFFQ 271 (431)
T ss_pred CCCEEEEEEECCCccccHHHHHHHHHHhC-CCceEEEEEeCCCCCCeeeCCceEEEeCCCeEEEEECCEEEEECCCceee
Confidence 355554433 3334567778889888887 8999998765442 22233334566666 2221 343
Q ss_pred ---------------------cceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Q 045638 264 ---------------------VQMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGR 322 (437)
Q Consensus 264 ---------------------~e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~ 322 (437)
+++|+|+|||+|.|++++|+.+.+|+|+|+||.|++.+++|++.|++. +++++++|+.
T Consensus 272 ~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~ 350 (431)
T TIGR00479 272 VNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLE 350 (431)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHH
Confidence 168999999999999999998889999999999999999999999997 8999999999
Q ss_pred HHHHHHHHhhcCCcccEEEEcCCcCh--HHHHHHHHH
Q 045638 323 RFIDAMFASQKAHKITQVVMNLPNDA--TEFLDAFRG 357 (437)
Q Consensus 323 ~~l~~~~~~~~~~~fD~VImnpP~~a--~eFLdaa~~ 357 (437)
+++..... ...+||.|++|||+.. .++++.+..
T Consensus 351 ~~l~~~~~--~~~~~D~vi~dPPr~G~~~~~l~~l~~ 385 (431)
T TIGR00479 351 TVLPKQPW--AGQIPDVLLLDPPRKGCAAEVLRTIIE 385 (431)
T ss_pred HHHHHHHh--cCCCCCEEEECcCCCCCCHHHHHHHHh
Confidence 87654321 1346999999999854 677776554
No 11
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.62 E-value=5.5e-15 Score=138.37 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=94.1
Q ss_pred ccccccccceeeeccce---------eeeccc-----c---cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHH
Q 045638 240 DAIHNDYRTMQLEGDAY---------MCESLF-----F---VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYL 301 (437)
Q Consensus 240 ~~I~gefR~~~levLaG---------v~E~~F-----F---~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L 301 (437)
..|.|.+|++.+....| ++|..| . +.+|||+|||+|.+|+.|+++|+ .|+++|.|+.|++.+
T Consensus 2 RIi~G~~kgr~l~~p~~~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i 81 (183)
T PF03602_consen 2 RIIGGKYKGRKLKTPKGDNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKII 81 (183)
T ss_dssp E--SSTTTT-EEE-TT--TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHH
T ss_pred EEEeeecCCCEecCCCCCCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHH
Confidence 45689999999998887 567633 2 58999999999999999999998 999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 045638 302 ERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKA 381 (437)
Q Consensus 302 ~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~ 381 (437)
++|++.-++.++++++++|+..++.+... ....||.|++|||+.....++.++..+..... ....-+-+.+..+.
T Consensus 82 ~~N~~~l~~~~~~~v~~~d~~~~l~~~~~--~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~---l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 82 KKNLEKLGLEDKIRVIKGDAFKFLLKLAK--KGEKFDIIFLDPPYAKGLYYEELLELLAENNL---LNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHT-GGGEEEEESSHHHHHHHHHH--CTS-EEEEEE--STTSCHHHHHHHHHHHHTTS---EEEEEEEEEEEETT
T ss_pred HHHHHHhCCCcceeeeccCHHHHHHhhcc--cCCCceEEEECCCcccchHHHHHHHHHHHCCC---CCCCEEEEEEecCC
Confidence 99999999987899999999999876532 35789999999999654433444444432211 01124555666554
No 12
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.58 E-value=2.6e-13 Score=139.51 Aligned_cols=133 Identities=16% Similarity=0.186 Sum_probs=96.1
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
.+|+|+|||+|.|++++|.++..|+|+|+||.|++.+++|++.|+++ +++++++|+.+++... ...||.||+||
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~-----~~~~D~vi~DP 308 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQ-----MSAPELVLVNP 308 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhc-----CCCCCEEEECC
Confidence 67999999999999999998889999999999999999999999997 8999999999887431 23599999999
Q ss_pred CcCh--HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHHHHHHhcccceeEEEeE--EecCCCcEEEE
Q 045638 345 PNDA--TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIRIALAEVAVNVEMRRVR--LVAPGKWMLFA 420 (437)
Q Consensus 345 P~~a--~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~~~L~~~~~~v~vr~VR--~VAP~k~m~ci 420 (437)
|+.. .++++.+.. ++++ .+|++-|-.. . +.+.+... ....++.|. |.=|...|+=.
T Consensus 309 Pr~G~~~~~l~~l~~-~~p~--------~ivyvsc~p~-------T---laRDl~~L-~gy~l~~~~~~DmFPqT~HvE~ 368 (374)
T TIGR02085 309 PRRGIGKELCDYLSQ-MAPK--------FILYSSCNAQ-------T---MAKDIAEL-SGYQIERVQLFDMFPHTSHYEV 368 (374)
T ss_pred CCCCCcHHHHHHHHh-cCCC--------eEEEEEeCHH-------H---HHHHHHHh-cCceEEEEEEeccCCCCCcEEE
Confidence 9953 455565543 2332 4677766311 1 22222222 235555555 44477777654
Q ss_pred EEE
Q 045638 421 SFV 423 (437)
Q Consensus 421 sFr 423 (437)
-.-
T Consensus 369 v~l 371 (374)
T TIGR02085 369 LTL 371 (374)
T ss_pred EEE
Confidence 433
No 13
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.55 E-value=1e-12 Score=131.93 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=70.4
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
..|||+|||+|.|++++|++++.|+|+|+||.|++.+++|++.|+++ +++++++|+.++... ....||.|++||
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~-~v~~~~~D~~~~~~~-----~~~~~D~Vv~dP 248 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLT-NVQFQALDSTQFATA-----QGEVPDLVLVNP 248 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEcCHHHHHHh-----cCCCCeEEEECC
Confidence 68999999999999999999999999999999999999999999995 899999999987642 124699999999
Q ss_pred CcCh
Q 045638 345 PNDA 348 (437)
Q Consensus 345 P~~a 348 (437)
|+..
T Consensus 249 Pr~G 252 (315)
T PRK03522 249 PRRG 252 (315)
T ss_pred CCCC
Confidence 9854
No 14
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.55 E-value=3.1e-14 Score=120.45 Aligned_cols=94 Identities=27% Similarity=0.353 Sum_probs=81.4
Q ss_pred ceEEeecCccchhHHHHhccC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKIV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg-~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.+|+|+|||+|.+++.+++.+ .+++++|+||.+++.++.|+..+++.++++++++|..++.... ...+||.|++|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~----~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL----PDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC----TTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc----cCceeEEEEEC
Confidence 579999999999999999998 7999999999999999999999999889999999999886322 25789999999
Q ss_pred CCcCh------------HHHHHHHHHHhcCC
Q 045638 344 LPNDA------------TEFLDAFRGIYRDR 362 (437)
Q Consensus 344 pP~~a------------~eFLdaa~~llk~~ 362 (437)
||+.. ..|+..+.++++++
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g 108 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPG 108 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCC
Confidence 99852 48899999999986
No 15
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.54 E-value=6e-14 Score=131.71 Aligned_cols=118 Identities=19% Similarity=0.074 Sum_probs=90.6
Q ss_pred ccccccccceeeeccce---------eeeccc-------ccceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHH
Q 045638 240 DAIHNDYRTMQLEGDAY---------MCESLF-------FVQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLE 302 (437)
Q Consensus 240 ~~I~gefR~~~levLaG---------v~E~~F-------F~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~ 302 (437)
..+.|.+|...+....| ++|.-| -+.+|||+|||+|.+++.++++|+ .|+++|.|+.|++.++
T Consensus 10 rIi~G~~kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~ 89 (189)
T TIGR00095 10 IIIGGWRGGRLLKLPPGGSTRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK 89 (189)
T ss_pred EEEehhhCCcccCCCCCCCCCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 34467777777776655 344422 148899999999999999999987 8999999999999999
Q ss_pred HHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcChHHHHHHHHHHhc
Q 045638 303 RNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYR 360 (437)
Q Consensus 303 ~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a~eFLdaa~~llk 360 (437)
+|++.|++.++++++++|+.+++..... ....+|.|++|||+.. ...+.....+.
T Consensus 90 ~N~~~~~~~~~~~~~~~D~~~~l~~~~~--~~~~~dvv~~DPPy~~-~~~~~~l~~l~ 144 (189)
T TIGR00095 90 ENLALLKSGEQAEVVRNSALRALKFLAK--KPTFDNVIYLDPPFFN-GALQALLELCE 144 (189)
T ss_pred HHHHHhCCcccEEEEehhHHHHHHHhhc--cCCCceEEEECcCCCC-CcHHHHHHHHH
Confidence 9999999987899999999988764321 1224899999999954 34444444443
No 16
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.53 E-value=4.8e-14 Score=145.36 Aligned_cols=100 Identities=25% Similarity=0.265 Sum_probs=89.4
Q ss_pred eEEeecCccchhHHHHhcc--CC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 266 MTGDVFAGVGPISIPAAKI--VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAkk--g~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+|||+|||+|.+||.+|++ |+ .|++||+||.|++++++|+++|+++ +++++++|+..++... ...||.|.+
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~-----~~~fDvIdl 120 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR-----NRKFHVIDI 120 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh-----CCCCCEEEe
Confidence 7999999999999999997 55 9999999999999999999999997 7999999999998642 356999999
Q ss_pred cCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 343 NLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 343 npP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
|||.+...|++++...++++ |++++.+-.
T Consensus 121 DPfGs~~~fld~al~~~~~~--------glL~vTaTD 149 (374)
T TIGR00308 121 DPFGTPAPFVDSAIQASAER--------GLLLVTATD 149 (374)
T ss_pred CCCCCcHHHHHHHHHhcccC--------CEEEEEecc
Confidence 99887789999999999876 688888643
No 17
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=5e-13 Score=125.88 Aligned_cols=94 Identities=31% Similarity=0.320 Sum_probs=81.2
Q ss_pred ceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.+|+|+|||+|.||+.++-.|+ +|+|+|++|+|++.+++|+..+ .+++.++++|+.++ ...+|.+|||
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~---------~~~~dtvimN 115 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDF---------RGKFDTVIMN 115 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhc---------CCccceEEEC
Confidence 5799999999999999999986 9999999999999999999984 34799999999987 3568999999
Q ss_pred CCcCh------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 045638 344 LPNDA------TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKAR 382 (437)
Q Consensus 344 pP~~a------~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~ 382 (437)
||..+ ..||+.|.++-. -+|...++.
T Consensus 116 PPFG~~~rhaDr~Fl~~Ale~s~-------------vVYsiH~a~ 147 (198)
T COG2263 116 PPFGSQRRHADRPFLLKALEISD-------------VVYSIHKAG 147 (198)
T ss_pred CCCccccccCCHHHHHHHHHhhh-------------eEEEeeccc
Confidence 99854 589999988753 467777765
No 18
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.48 E-value=1.9e-13 Score=141.29 Aligned_cols=97 Identities=27% Similarity=0.282 Sum_probs=85.2
Q ss_pred ceEEeecCccchhHHHHhcc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|+|+|||+|.+|+++|+. ++ .|+++|+||.|++.+++|+++|+++ +++++++|+.+++.. ...||+|++
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~------~~~fD~V~l 131 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE------ERKFDVVDI 131 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh------cCCCCEEEE
Confidence 37999999999999999885 43 8999999999999999999999997 688999999988742 246999999
Q ss_pred cCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEE
Q 045638 343 NLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVY 376 (437)
Q Consensus 343 npP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY 376 (437)
|||.+...|++.++..++++ ++||+.
T Consensus 132 DP~Gs~~~~l~~al~~~~~~--------gilyvS 157 (382)
T PRK04338 132 DPFGSPAPFLDSAIRSVKRG--------GLLCVT 157 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCC--------CEEEEE
Confidence 99988889999988888875 577777
No 19
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.48 E-value=3.3e-13 Score=128.09 Aligned_cols=116 Identities=20% Similarity=0.239 Sum_probs=88.1
Q ss_pred cccccccccceeeeccce--e-------eeccc--c-----cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHH
Q 045638 239 IDAIHNDYRTMQLEGDAY--M-------CESLF--F-----VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYL 301 (437)
Q Consensus 239 ~~~I~gefR~~~levLaG--v-------~E~~F--F-----~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L 301 (437)
+..+.|.|+++.+.+..| + +|..| + +.+|||+|||+|.+++.++.+++ +|+++|+||.+++.+
T Consensus 13 mrIi~g~~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a 92 (199)
T PRK10909 13 IRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQL 92 (199)
T ss_pred EEEEeeccCCCEeCCCCCCCcCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHH
Confidence 455678888888877664 2 23212 1 37899999999999998766654 999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcChHHHHHHHHHHhcC
Q 045638 302 ERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFRGIYRD 361 (437)
Q Consensus 302 ~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a~eFLdaa~~llk~ 361 (437)
++|++.|+++ +++++++|+.+++.. ....||.|++|||+.. .+...++..+..
T Consensus 93 ~~Nl~~~~~~-~v~~~~~D~~~~l~~-----~~~~fDlV~~DPPy~~-g~~~~~l~~l~~ 145 (199)
T PRK10909 93 IKNLATLKAG-NARVVNTNALSFLAQ-----PGTPHNVVFVDPPFRK-GLLEETINLLED 145 (199)
T ss_pred HHHHHHhCCC-cEEEEEchHHHHHhh-----cCCCceEEEECCCCCC-ChHHHHHHHHHH
Confidence 9999999987 799999999887642 1346999999999632 344444454443
No 20
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.46 E-value=3.6e-13 Score=126.83 Aligned_cols=110 Identities=24% Similarity=0.274 Sum_probs=93.2
Q ss_pred cccccccccceeeeccce---------eeeccc-------c-cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHH
Q 045638 239 IDAIHNDYRTMQLEGDAY---------MCESLF-------F-VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDY 300 (437)
Q Consensus 239 ~~~I~gefR~~~levLaG---------v~E~~F-------F-~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~ 300 (437)
+..|.|.+|++.+.+..| +||..| + +.+|||+|||+|.+++.|+++|+ +|+.+|.|..|+..
T Consensus 2 mRIi~G~~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~ 81 (187)
T COG0742 2 MRIIGGKYKGRKLKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKI 81 (187)
T ss_pred eEEEeccccCCcccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHH
Confidence 355689999999999887 677633 3 48999999999999999999998 99999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcChHHHH
Q 045638 301 LERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFL 352 (437)
Q Consensus 301 L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a~eFL 352 (437)
+++|++.-++..++.++.+|+..+++... ....||.|++|||+. ...+
T Consensus 82 l~~N~~~l~~~~~~~~~~~da~~~L~~~~---~~~~FDlVflDPPy~-~~l~ 129 (187)
T COG0742 82 LKENLKALGLEGEARVLRNDALRALKQLG---TREPFDLVFLDPPYA-KGLL 129 (187)
T ss_pred HHHHHHHhCCccceEEEeecHHHHHHhcC---CCCcccEEEeCCCCc-cchh
Confidence 99999999988899999999998876542 122499999999995 4444
No 21
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.42 E-value=8.8e-13 Score=134.78 Aligned_cols=138 Identities=20% Similarity=0.300 Sum_probs=84.3
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHh----------hcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS----------QKA 334 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~----------~~~ 334 (437)
..|+|+|||+|.||+++|+++.+|+|+|+++.|++.+++|++.|+++ |++++++++.++...+... ...
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 276 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAKALAKAREFNRLKGIDLKS 276 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGC
T ss_pred CcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhHHHHhhHHHHhhhhhhhhh
Confidence 57999999999999999999999999999999999999999999998 7999999987764332100 012
Q ss_pred CcccEEEEcCCcCh--HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHHHHHHhcccceeEEEeE--E
Q 045638 335 HKITQVVMNLPNDA--TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIRIALAEVAVNVEMRRVR--L 410 (437)
Q Consensus 335 ~~fD~VImnpP~~a--~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~~~L~~~~~~v~vr~VR--~ 410 (437)
..+|.||+|||+.. ...++.+.+ ++ -+|++-|.-.. +.+.+........+..|. |
T Consensus 277 ~~~d~vilDPPR~G~~~~~~~~~~~-~~----------~ivYvSCnP~t----------laRDl~~L~~~y~~~~v~~~D 335 (352)
T PF05958_consen 277 FKFDAVILDPPRAGLDEKVIELIKK-LK----------RIVYVSCNPAT----------LARDLKILKEGYKLEKVQPVD 335 (352)
T ss_dssp TTESEEEE---TT-SCHHHHHHHHH-SS----------EEEEEES-HHH----------HHHHHHHHHCCEEEEEEEEE-
T ss_pred cCCCEEEEcCCCCCchHHHHHHHhc-CC----------eEEEEECCHHH----------HHHHHHHHhhcCEEEEEEEee
Confidence 35899999999965 345554433 21 27777774221 122222212234444444 5
Q ss_pred ecCCCcEEEEEEEE
Q 045638 411 VAPGKWMLFASFVL 424 (437)
Q Consensus 411 VAP~k~m~cisFrL 424 (437)
.-|...|+=.-+-|
T Consensus 336 mFP~T~HvE~v~lL 349 (352)
T PF05958_consen 336 MFPQTHHVETVALL 349 (352)
T ss_dssp SSTTSS--EEEEEE
T ss_pred cCCCCCcEEEEEEE
Confidence 55888887655444
No 22
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.41 E-value=5.7e-12 Score=129.20 Aligned_cols=138 Identities=15% Similarity=0.228 Sum_probs=97.1
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhh----------cC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ----------KA 334 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~----------~~ 334 (437)
..|+|+|||+|.||+++|+...+|+|+|+++.|++.+++|++.|+++ +++++++|+.++++.+.... ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 47999999999999999988779999999999999999999999997 89999999999886532110 01
Q ss_pred CcccEEEEcCCcCh--HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHHHHHHhcccceeEEEeE--E
Q 045638 335 HKITQVVMNLPNDA--TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIRIALAEVAVNVEMRRVR--L 410 (437)
Q Consensus 335 ~~fD~VImnpP~~a--~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~~~L~~~~~~v~vr~VR--~ 410 (437)
..||.|++|||+.. .+.+..+.. .. .+|++-|.-. . +.+.+........+..|. |
T Consensus 287 ~~~D~v~lDPPR~G~~~~~l~~l~~---~~--------~ivyvSC~p~------t----larDl~~L~~gY~l~~v~~~D 345 (362)
T PRK05031 287 YNFSTIFVDPPRAGLDDETLKLVQA---YE--------RILYISCNPE------T----LCENLETLSQTHKVERFALFD 345 (362)
T ss_pred CCCCEEEECCCCCCCcHHHHHHHHc---cC--------CEEEEEeCHH------H----HHHHHHHHcCCcEEEEEEEcc
Confidence 25899999999954 344444433 22 4778777431 1 222222221235555555 4
Q ss_pred ecCCCcEEEEEEEE
Q 045638 411 VAPGKWMLFASFVL 424 (437)
Q Consensus 411 VAP~k~m~cisFrL 424 (437)
.=|...|+=.-..|
T Consensus 346 mFPqT~HvE~v~lL 359 (362)
T PRK05031 346 QFPYTHHMECGVLL 359 (362)
T ss_pred cCCCCCcEEEEEEE
Confidence 45888887655544
No 23
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.41 E-value=6.4e-13 Score=121.89 Aligned_cols=91 Identities=30% Similarity=0.323 Sum_probs=77.2
Q ss_pred cceEEeecCccchhHHHHhccCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVK--RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~--~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
...|||+|||+|.+|+.+|+++. +|+++|+||.|++.+++|++.|++++ +++++.|..+.+. ..+||.|+
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~-------~~~fD~Iv 103 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP-------DGKFDLIV 103 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC-------TTCEEEEE
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc-------ccceeEEE
Confidence 37899999999999999999754 69999999999999999999999986 9999999987642 46899999
Q ss_pred EcCCcC---------hHHHHHHHHHHhcCC
Q 045638 342 MNLPND---------ATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~---------a~eFLdaa~~llk~~ 362 (437)
+|||.. ..+|+..+.+.|+++
T Consensus 104 ~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 104 SNPPFHAGGDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp E---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred EccchhcccccchhhHHHHHHHHHHhccCC
Confidence 999972 257888889999986
No 24
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.40 E-value=3.3e-12 Score=125.07 Aligned_cols=139 Identities=20% Similarity=0.279 Sum_probs=104.5
Q ss_pred cceEEeecCccchhHHHHhcc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkk-g-~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
..+|+|+|||+|..++.+|++ . ++++++|+.+++++.+++|+++|+++++|+++++|..++.+... ..+||+||
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~----~~~fD~Ii 120 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV----FASFDLII 120 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc----ccccCEEE
Confidence 489999999999999999997 5 69999999999999999999999999999999999999876432 34699999
Q ss_pred EcCCcCh----------------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHH---HHH
Q 045638 342 MNLPNDA----------------------TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIR---IAL 396 (437)
Q Consensus 342 mnpP~~a----------------------~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~---~~L 396 (437)
||||+.. .+++..+..+++++ |.+-+ +.. .+|+. ..+
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~--------G~l~~---V~r-------~erl~ei~~~l 182 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG--------GRLAF---VHR-------PERLAEIIELL 182 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC--------CEEEE---Eec-------HHHHHHHHHHH
Confidence 9999731 37788888888886 33221 111 12332 223
Q ss_pred HhcccceeEEEeEEecCCC----cEEEEEEEEcc
Q 045638 397 AEVAVNVEMRRVRLVAPGK----WMLFASFVLPE 426 (437)
Q Consensus 397 ~~~~~~v~vr~VR~VAP~k----~m~cisFrLp~ 426 (437)
.. ...+..++..|.|.. .++-+.++...
T Consensus 183 ~~--~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~ 214 (248)
T COG4123 183 KS--YNLEPKRIQFVYPKIGKAANRVLVEAIKGG 214 (248)
T ss_pred Hh--cCCCceEEEEecCCCCCcceEEEEEEecCC
Confidence 22 245667788888876 45666665433
No 25
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.33 E-value=2.8e-11 Score=123.82 Aligned_cols=138 Identities=14% Similarity=0.226 Sum_probs=96.8
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHh-----hc-----C
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS-----QK-----A 334 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~-----~~-----~ 334 (437)
..|+|+|||+|.||+++|+....|+|+|+|+.|++.+++|++.|+++ +++++++|+.+++...... .. .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 47999999999999999988779999999999999999999999997 6999999999987642110 00 1
Q ss_pred CcccEEEEcCCcCh--HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHHHHHHhcccceeEEEeE--E
Q 045638 335 HKITQVVMNLPNDA--TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIRIALAEVAVNVEMRRVR--L 410 (437)
Q Consensus 335 ~~fD~VImnpP~~a--~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~~~L~~~~~~v~vr~VR--~ 410 (437)
..+|.|++|||+.. .+.++.+.+ .+ .+|++-|--.. +.+.+........+..|. |
T Consensus 278 ~~~d~v~lDPPR~G~~~~~l~~l~~---~~--------~ivYvsC~p~t----------laRDl~~L~~~Y~l~~v~~~D 336 (353)
T TIGR02143 278 YNCSTIFVDPPRAGLDPDTCKLVQA---YE--------RILYISCNPET----------LKANLEQLSETHRVERFALFD 336 (353)
T ss_pred CCCCEEEECCCCCCCcHHHHHHHHc---CC--------cEEEEEcCHHH----------HHHHHHHHhcCcEEEEEEEcc
Confidence 23799999999854 455555443 22 47777774211 222222222225566666 4
Q ss_pred ecCCCcEEEEEEEE
Q 045638 411 VAPGKWMLFASFVL 424 (437)
Q Consensus 411 VAP~k~m~cisFrL 424 (437)
.=|...|+=.-.-|
T Consensus 337 mFP~T~HvE~v~lL 350 (353)
T TIGR02143 337 QFPYTHHMECGVLL 350 (353)
T ss_pred cCCCCCcEEEEEEE
Confidence 45888887554444
No 26
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.32 E-value=3.2e-11 Score=126.52 Aligned_cols=139 Identities=15% Similarity=0.171 Sum_probs=96.0
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
+.|||+|||+|.|++++|++++.|+|+|+|+.|++.+++|++.|+++ +++++++|+.+.+..... ....||.|++||
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~~--~~~~fD~Vi~dP 375 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQPW--ALGGFDKVLLDP 375 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhhh--hcCCCCEEEECc
Confidence 68999999999999999999889999999999999999999999997 799999999887643210 134699999999
Q ss_pred CcCh-HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHHHHHHhcccceeEEEeE--EecCCCcEEEEE
Q 045638 345 PNDA-TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIRIALAEVAVNVEMRRVR--LVAPGKWMLFAS 421 (437)
Q Consensus 345 P~~a-~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~~~L~~~~~~v~vr~VR--~VAP~k~m~cis 421 (437)
|+.. .+.+..+.++ ... .+|.+-|.-. . ...| +. .|.+ ....+..|+ |.-|...|+=.-
T Consensus 376 Pr~g~~~~~~~l~~~-~~~--------~ivyvSCnp~-t-laRD----l~-~L~~--~gY~l~~i~~~DmFP~T~HvE~v 437 (443)
T PRK13168 376 PRAGAAEVMQALAKL-GPK--------RIVYVSCNPA-T-LARD----AG-VLVE--AGYRLKRAGMLDMFPHTGHVESM 437 (443)
T ss_pred CCcChHHHHHHHHhc-CCC--------eEEEEEeChH-H-hhcc----HH-HHhh--CCcEEEEEEEeccCCCCCcEEEE
Confidence 9964 3445444332 222 3566666321 1 0112 11 1212 224455555 455888887655
Q ss_pred EEE
Q 045638 422 FVL 424 (437)
Q Consensus 422 FrL 424 (437)
..|
T Consensus 438 ~lL 440 (443)
T PRK13168 438 ALF 440 (443)
T ss_pred EEE
Confidence 444
No 27
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.31 E-value=1.1e-11 Score=123.04 Aligned_cols=76 Identities=26% Similarity=0.250 Sum_probs=67.4
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|+|+|||+|.+++.+|++ +.+|+|+|+||.|++.+++|++.|++.++++++++|+.+.++ ..+||.|++
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~-------~~~fD~Iv~ 195 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP-------GRKYDLIVS 195 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC-------CCCccEEEE
Confidence 36999999999999999986 469999999999999999999999998789999999876542 346999999
Q ss_pred cCCcC
Q 045638 343 NLPND 347 (437)
Q Consensus 343 npP~~ 347 (437)
|||+.
T Consensus 196 NPPy~ 200 (284)
T TIGR03533 196 NPPYV 200 (284)
T ss_pred CCCCC
Confidence 99973
No 28
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.26 E-value=5e-11 Score=109.54 Aligned_cols=98 Identities=24% Similarity=0.325 Sum_probs=82.6
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
.+|+|+|||+|.+++.+++.+.+|+++|+||.+++.+++|++.|++ +++++++|+.+.. ..+||.|++||
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--------~~~fD~Vi~n~ 90 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--------RGKFDVILFNP 90 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--------CCcccEEEECC
Confidence 6799999999999999999887999999999999999999999987 4899999987643 24799999999
Q ss_pred CcC-------------------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 345 PND-------------------------ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 345 P~~-------------------------a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
|.. ...|++.+.++++++ |++.++....
T Consensus 91 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g--------G~~~~~~~~~ 143 (179)
T TIGR00537 91 PYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG--------GRVQLIQSSL 143 (179)
T ss_pred CCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC--------CEEEEEEecc
Confidence 972 135788888888886 5776666544
No 29
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.25 E-value=3.7e-11 Score=120.84 Aligned_cols=75 Identities=25% Similarity=0.241 Sum_probs=67.1
Q ss_pred eEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 266 MTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
+|+|+|||+|.+++.+|+. +++|+|+|+||.|++.+++|++.|++.++++++++|+.+.++ ..+||.|++|
T Consensus 136 ~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~-------~~~fDlIvsN 208 (307)
T PRK11805 136 RILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP-------GRRYDLIVSN 208 (307)
T ss_pred EEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC-------CCCccEEEEC
Confidence 6999999999999999986 469999999999999999999999998789999999876542 3479999999
Q ss_pred CCcC
Q 045638 344 LPND 347 (437)
Q Consensus 344 pP~~ 347 (437)
||+.
T Consensus 209 PPyi 212 (307)
T PRK11805 209 PPYV 212 (307)
T ss_pred CCCC
Confidence 9984
No 30
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.3e-11 Score=122.74 Aligned_cols=73 Identities=29% Similarity=0.243 Sum_probs=64.7
Q ss_pred eEEeecCccchhHHHHhccCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 266 MTGDVFAGVGPISIPAAKIVK--RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAkkg~--~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.|+|+|||+|.+|+.+|++.. .|+|+|+||+|++.+++|++.|++ .++.++.+|.++-++ ++||.||.|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~--------~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLR--------GKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccC--------CceeEEEeC
Confidence 599999999999999999764 999999999999999999999999 477778778776552 479999999
Q ss_pred CCcC
Q 045638 344 LPND 347 (437)
Q Consensus 344 pP~~ 347 (437)
||+-
T Consensus 184 PPYi 187 (280)
T COG2890 184 PPYI 187 (280)
T ss_pred CCCC
Confidence 9983
No 31
>PRK14967 putative methyltransferase; Provisional
Probab=99.24 E-value=6.4e-11 Score=112.88 Aligned_cols=89 Identities=24% Similarity=0.247 Sum_probs=76.2
Q ss_pred ceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
++|||+|||+|.+++.+++.++ +|+++|+||.+++.+++|++.|++ +++++++|..+.+. ...||.|++|
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~-------~~~fD~Vi~n 108 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE-------FRPFDVVVSN 108 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc-------CCCeeEEEEC
Confidence 6899999999999999999876 999999999999999999999987 48999999877532 3579999999
Q ss_pred CCcCh-------------------------HHHHHHHHHHhcCC
Q 045638 344 LPNDA-------------------------TEFLDAFRGIYRDR 362 (437)
Q Consensus 344 pP~~a-------------------------~eFLdaa~~llk~~ 362 (437)
||+.. ..+++.+.++++++
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g 152 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG 152 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC
Confidence 99641 24677778888886
No 32
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.22 E-value=1.8e-11 Score=113.25 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=61.6
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
++|+|+|||+|.-+|..|+...+|+|+|+||.-+++++.|++.-|+.++|+++++|..+.++.... ...+|.|+++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~---~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS---NKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc---cccccEEEECC
Confidence 479999999999999999998899999999999999999999999999999999999998654211 11279999999
Q ss_pred CcCh
Q 045638 345 PNDA 348 (437)
Q Consensus 345 P~~a 348 (437)
|=..
T Consensus 78 PWGG 81 (163)
T PF09445_consen 78 PWGG 81 (163)
T ss_dssp -BSS
T ss_pred CCCC
Confidence 9543
No 33
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.22 E-value=7e-11 Score=115.48 Aligned_cols=75 Identities=20% Similarity=0.182 Sum_probs=63.3
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|+|+|||+|.+++.+++. +.+|+|+|+||.|++.+++|++.|++ +++++|+.+.+.... ..+||.||+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~----~~~~~D~~~~l~~~~----~~~fDlVv~ 159 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG----TVHEGDLYDALPTAL----RGRVDILAA 159 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----EEEEeechhhcchhc----CCCEeEEEE
Confidence 36999999999999999875 45999999999999999999999873 679999987654321 246999999
Q ss_pred cCCcC
Q 045638 343 NLPND 347 (437)
Q Consensus 343 npP~~ 347 (437)
|||+.
T Consensus 160 NPPy~ 164 (251)
T TIGR03704 160 NAPYV 164 (251)
T ss_pred CCCCC
Confidence 99974
No 34
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.20 E-value=1.8e-10 Score=113.15 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=81.9
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|||+|||+|.+++.+|.. ...|+|+|+++.+++.+++|++.+++. +++++++|+..+... ...||.|+
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~------~~~fD~Vl 145 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAA------VPKFDAIL 145 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhh------ccCCCEEE
Confidence 78999999999999998874 248999999999999999999999997 699999999876321 24599999
Q ss_pred EcCCcCh--------------------------HHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 342 MNLPNDA--------------------------TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 342 mnpP~~a--------------------------~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
+|||-+. .+.|..+.++++++ |++.+.+-+
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg--------G~lvYstcs 201 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG--------GVLVYSTCS 201 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC--------CEEEEEeCC
Confidence 9999642 25788888888886 577544333
No 35
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.20 E-value=1.2e-10 Score=97.55 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=76.7
Q ss_pred ceEEeecCccchhHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk--kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|||+|||+|.+++.+++ .+++|+|+|++|.+++.+++|+..++..++++++++|+ ..... ....||.|++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-----~~~~~D~v~~ 76 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-----FLEPFDLVIC 76 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-----TSSCEEEEEE
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-----cCCCCCEEEE
Confidence 5799999999999999999 68899999999999999999998888888999999999 32221 2456999999
Q ss_pred cC-Cc---C----hHHHHHHHHHHhcCC
Q 045638 343 NL-PN---D----ATEFLDAFRGIYRDR 362 (437)
Q Consensus 343 np-P~---~----a~eFLdaa~~llk~~ 362 (437)
+. -. . ..++++.+.+.++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pg 104 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPG 104 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCC
Confidence 87 21 1 236688888888886
No 36
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.19 E-value=2.3e-10 Score=107.20 Aligned_cols=93 Identities=18% Similarity=0.275 Sum_probs=79.3
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|+|+|||+|.+++.+|+. +.+|+|+|++|.+++.+++|++.|++.++++++++|+.+++... ...||+|+
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~-----~~~~D~V~ 116 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI-----NEKFDRIF 116 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc-----CCCCCEEE
Confidence 78999999999999999874 35999999999999999999999997668999999998876431 35799999
Q ss_pred EcCCc-ChHHHHHHHHHHhcCC
Q 045638 342 MNLPN-DATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~-~a~eFLdaa~~llk~~ 362 (437)
++... ...++++.+.++++++
T Consensus 117 ~~~~~~~~~~~l~~~~~~Lkpg 138 (198)
T PRK00377 117 IGGGSEKLKEIISASWEIIKKG 138 (198)
T ss_pred ECCCcccHHHHHHHHHHHcCCC
Confidence 97643 3468899999999886
No 37
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.19 E-value=9.6e-11 Score=118.25 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=79.1
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
+.|+|+|||+|.+++.++..|+.|+|+|+|+.+++.++.|++.+++++ +.++++|+.+... ....||.|++||
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~------~~~~~D~Iv~dP 256 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPL------SSESVDAIATDP 256 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCc------ccCCCCEEEECC
Confidence 689999999999999999999999999999999999999999999985 8999999987521 135799999999
Q ss_pred CcCh-------------HHHHHHHHHHhcCC
Q 045638 345 PNDA-------------TEFLDAFRGIYRDR 362 (437)
Q Consensus 345 P~~a-------------~eFLdaa~~llk~~ 362 (437)
|+.. .+++..+.+.++++
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~g 287 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSE 287 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCC
Confidence 9731 46788888888876
No 38
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.18 E-value=4e-10 Score=111.61 Aligned_cols=76 Identities=28% Similarity=0.270 Sum_probs=66.6
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|+|+|||+|.+++.+|+. +++|+|+|+||.|++.+++|++.|++.++++++++|..+.+. ...||.|++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~-------~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA-------GQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc-------CCCccEEEE
Confidence 36999999999999999985 359999999999999999999999997679999999876431 236999999
Q ss_pred cCCcC
Q 045638 343 NLPND 347 (437)
Q Consensus 343 npP~~ 347 (437)
|||+.
T Consensus 189 NPPyi 193 (284)
T TIGR00536 189 NPPYI 193 (284)
T ss_pred CCCCC
Confidence 99983
No 39
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=99.15 E-value=1.1e-11 Score=128.28 Aligned_cols=229 Identities=28% Similarity=0.284 Sum_probs=172.2
Q ss_pred CccccccccCcchhhhhhhhcc-CCC--CCccCceEEEEEehhhhhhhccccCCcCCCCcccccceeeeeecccccccch
Q 045638 4 KEEFDARISRPRRKKRKEKKEG-KEG--NGRKGELYVVEVVEEERKEMSGLLGDEFRGGEKWRGSTRLLLLDEEFVDKNV 80 (437)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (437)
|+ |.+|+++++++.....-.. +.. -|+.| +|+||=|.+ ..+++..|+- -|+ |||...||+|+. +
T Consensus 180 K~-n~~ktvv~K~~~Itn~yR~~~~eviAGe~n--~vtevre~~-~~Fk~DfskV-----YWn--sRL~~Eherlsg--~ 246 (495)
T KOG2078|consen 180 KN-NLIKTVVNKIGRITNRYRNFKLEVIAGERN--LVTEVREGG-ERFKFDFSKV-----YWN--SRLSHEHERLSG--L 246 (495)
T ss_pred cC-CCceEeeecccchhhhhcccCceEecCCCc--eEEEEecCC-eeEEEecceE-----Eee--ccchhHHHHHhh--c
Confidence 55 8999999998877655322 111 23344 778876544 4556665554 499 999999999998 6
Q ss_pred hhHHHHHhhhhhhhhcccccchhhhhchhhhhHHHHHHHhhcchhhhhhhhhCCCCCCCCCCCCCcccceeecccccccC
Q 045638 81 LRFHILALAKHYIHCLGFYSKHIQFLSKNELNWAMTEFLYRLQPLLSLRMALKYSVSPSIPCSGSTVGKVYHWSHLYGRG 160 (437)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (437)
... ++++...+----|+ -.++.+
T Consensus 247 fk~----------------------------gevv~D~FaGvGPf--a~Pa~k--------------------------- 269 (495)
T KOG2078|consen 247 FKP----------------------------GEVVCDVFAGVGPF--ALPAAK--------------------------- 269 (495)
T ss_pred cCC----------------------------cchhhhhhcCcCcc--ccchhh---------------------------
Confidence 666 88887743333333 111111
Q ss_pred CcceEEEEEeeccccCCCCHHHHHHccCCCCCCCCceeEEECcEEEEEeCCCCcccHHHHHHHHHHhcCCCceEEEEccc
Q 045638 161 TECFQLEVCNVDEAFDFHSYVQILEALLPKGMIIPSAFETVGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKID 240 (437)
Q Consensus 161 ~~~~elv~~~l~l~Y~~~~~~eIL~~iLP~~~~ipssfd~iGdIa~lnl~~e~~p~k~~I~evLl~k~~P~iktVv~K~~ 240 (437)
.+ |.+...|.||.+-++|+..+|-+...|+.+++.|+.|+..++++.+||+++|++..++++.+.+.|+.++++
T Consensus 270 -K~-----crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr~e~~~~~~~I~~~v~~kl~k~~~t~~~~~d 343 (495)
T KOG2078|consen 270 -KG-----CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLRQEPLPYKRLIADEVLDKLMKKIGTVVNKID 343 (495)
T ss_pred -cC-----cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhhcCCchhhhHHHHHHhhhhhhhhcccccccc
Confidence 11 677899999999999999999888889999999999999999999999999999999988788999999999
Q ss_pred cccccccceeeecccee-------eec--cc----------------------cc-----------------ceEEeecC
Q 045638 241 AIHNDYRTMQLEGDAYM-------CES--LF----------------------FV-----------------QMTGDVFA 272 (437)
Q Consensus 241 ~I~gefR~~~levLaGv-------~E~--~F----------------------F~-----------------e~VLDlFA 272 (437)
.+.+.+|+.+.++++|+ -|+ +| |. ...+++++
T Consensus 344 ~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la~k~~~d~~~lplvhcy~F~k~~~~~~s~e~~V~ar~~~~~kv~~ 423 (495)
T KOG2078|consen 344 RIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLARKGPIDKTPLPLVHCYCFSKLFCDVSSTEDLVTARIVAALKVFA 423 (495)
T ss_pred cCCCcccccchhhhhhhccChHHHHHHHHHhHHHHhccCccccccceeEEEEEEeecccCCCchHHHHHHHHHhhcceee
Confidence 99999999999999881 122 22 21 34677888
Q ss_pred ccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 045638 273 GVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL 310 (437)
Q Consensus 273 GvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv 310 (437)
|.| ++.++....+|.+++.++.|...+-.|...|+.
T Consensus 424 e~~--~~~~~h~VR~VapnK~M~ca~~~lp~~~l~~~~ 459 (495)
T KOG2078|consen 424 EDG--ALVSLHLVRKVAPNKEMYCASFQLPANVLVNEL 459 (495)
T ss_pred ccc--cceeeeeeeccCCCcccchhhhhcHHHHhhhhh
Confidence 888 444445556899999999998888888877765
No 40
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=7.9e-10 Score=111.12 Aligned_cols=135 Identities=19% Similarity=0.217 Sum_probs=94.9
Q ss_pred cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+.+|+|+|||+|-+||.+++.|+ +|+|+|++|-|++.+++|+++|+++..+..-..+..+... ...||.||.
T Consensus 163 g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~-------~~~~DvIVA 235 (300)
T COG2264 163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE-------NGPFDVIVA 235 (300)
T ss_pred CCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc-------cCcccEEEe
Confidence 38999999999999999999998 7999999999999999999999998433333333333321 357999999
Q ss_pred cCCcCh-HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHHHHHHhcccceeEEEeEEecCCCcEEEEE
Q 045638 343 NLPNDA-TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIRIALAEVAVNVEMRRVRLVAPGKWMLFAS 421 (437)
Q Consensus 343 npP~~a-~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~~~L~~~~~~v~vr~VR~VAP~k~m~cis 421 (437)
|--+.. ..+.+.+.++++++ |++-.-.+-.. -.+.+.+.+.. .++..+.-...+.| +|+.
T Consensus 236 NILA~vl~~La~~~~~~lkpg--------g~lIlSGIl~~------q~~~V~~a~~~----~gf~v~~~~~~~eW-~~i~ 296 (300)
T COG2264 236 NILAEVLVELAPDIKRLLKPG--------GRLILSGILED------QAESVAEAYEQ----AGFEVVEVLEREEW-VAIV 296 (300)
T ss_pred hhhHHHHHHHHHHHHHHcCCC--------ceEEEEeehHh------HHHHHHHHHHh----CCCeEeEEEecCCE-EEEE
Confidence 986644 47888899999986 57766665432 12334444422 22333444444444 6666
Q ss_pred EEE
Q 045638 422 FVL 424 (437)
Q Consensus 422 FrL 424 (437)
++.
T Consensus 297 ~kr 299 (300)
T COG2264 297 GKR 299 (300)
T ss_pred EEc
Confidence 654
No 41
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.13 E-value=2e-10 Score=118.80 Aligned_cols=99 Identities=19% Similarity=0.125 Sum_probs=81.7
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHHHHHhhcCCcccEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLE--KKIEVFNMDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~--~~V~vi~gDa~~~l~~~~~~~~~~~fD~V 340 (437)
..|||+|||+|.+++.++++ +.+|+++|+|+.|++.+++|++.|+.. .+++++.+|+.+.+ ...+||.|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~-------~~~~fDlI 302 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-------EPFRFNAV 302 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC-------CCCCEEEE
Confidence 58999999999999999987 359999999999999999999999864 37899999986543 13579999
Q ss_pred EEcCCcC---------hHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 045638 341 VMNLPND---------ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGF 378 (437)
Q Consensus 341 ImnpP~~---------a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F 378 (437)
++|||.. +.+++..+.+.++++ |.+.+-..
T Consensus 303 lsNPPfh~~~~~~~~ia~~l~~~a~~~LkpG--------G~L~iV~n 341 (378)
T PRK15001 303 LCNPPFHQQHALTDNVAWEMFHHARRCLKIN--------GELYIVAN 341 (378)
T ss_pred EECcCcccCccCCHHHHHHHHHHHHHhcccC--------CEEEEEEe
Confidence 9999962 347788888889887 56665543
No 42
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.13 E-value=3e-10 Score=105.97 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=77.2
Q ss_pred cceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
+.+|+|+|||+|.+++.+|..+ ++|+|+|.||.+++.+++|++.++++ +++++++|+.++. ...+||.|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-------~~~~fD~I~ 114 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-------HEEQFDVIT 114 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-------ccCCccEEE
Confidence 3789999999999999988653 58999999999999999999999987 6999999998852 135799999
Q ss_pred EcCCcChHHHHHHHHHHhcCC
Q 045638 342 MNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~ 362 (437)
++.-.....++..+.++++++
T Consensus 115 s~~~~~~~~~~~~~~~~Lkpg 135 (181)
T TIGR00138 115 SRALASLNVLLELTLNLLKVG 135 (181)
T ss_pred ehhhhCHHHHHHHHHHhcCCC
Confidence 997334467888888888886
No 43
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.12 E-value=2.3e-09 Score=99.17 Aligned_cols=96 Identities=20% Similarity=0.131 Sum_probs=79.2
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|||+|||+|.+++.+++++ ++|+++|+||.+++.+++|++.|++. +++++++|+...+ ...||.|++
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~~--------~~~~D~v~~ 103 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIEL--------PGKADAIFI 103 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhhc--------CcCCCEEEE
Confidence 689999999999999999863 59999999999999999999999986 6999999975322 246999999
Q ss_pred cCCc-ChHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 045638 343 NLPN-DATEFLDAFRGIYRDRPEDVKFTFPKTHVYG 377 (437)
Q Consensus 343 npP~-~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~ 377 (437)
+... ...++++.+.+.++++ |++.++.
T Consensus 104 ~~~~~~~~~~l~~~~~~Lk~g--------G~lv~~~ 131 (187)
T PRK08287 104 GGSGGNLTAIIDWSLAHLHPG--------GRLVLTF 131 (187)
T ss_pred CCCccCHHHHHHHHHHhcCCC--------eEEEEEE
Confidence 8653 3467888888889886 5665543
No 44
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.11 E-value=4.4e-10 Score=107.12 Aligned_cols=74 Identities=26% Similarity=0.258 Sum_probs=66.1
Q ss_pred eEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 266 MTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.|+|+|||+|.+++.+++. +..|+++|++|.+++.++.|++.++++ ++.++++|+.+.. ...+||.|++|
T Consensus 90 ~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~-------~~~~fD~Vi~n 161 (251)
T TIGR03534 90 RVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPL-------PGGKFDLIVSN 161 (251)
T ss_pred eEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccC-------cCCceeEEEEC
Confidence 6999999999999999986 459999999999999999999999997 7999999987643 14579999999
Q ss_pred CCcC
Q 045638 344 LPND 347 (437)
Q Consensus 344 pP~~ 347 (437)
||+.
T Consensus 162 pPy~ 165 (251)
T TIGR03534 162 PPYI 165 (251)
T ss_pred CCCC
Confidence 9974
No 45
>PRK14968 putative methyltransferase; Provisional
Probab=99.10 E-value=7.2e-10 Score=100.80 Aligned_cols=91 Identities=30% Similarity=0.378 Sum_probs=77.2
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKK-IEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~-V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.+|||+|||+|.+++.+++.+++|+++|++|++++.+++|++.|++.++ +.++++|..+.+. ...||.|++|
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~d~vi~n 97 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR-------GDKFDVILFN 97 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc-------ccCceEEEEC
Confidence 5799999999999999999988999999999999999999999998643 8899999866432 2379999999
Q ss_pred CCcCh-------------------------HHHHHHHHHHhcCC
Q 045638 344 LPNDA-------------------------TEFLDAFRGIYRDR 362 (437)
Q Consensus 344 pP~~a-------------------------~eFLdaa~~llk~~ 362 (437)
||+.. ..++..+.++++++
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 99742 34677788888876
No 46
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=4.3e-10 Score=118.91 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=71.3
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCccc-EEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT-QVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD-~VImn 343 (437)
+.++|+|||+|.|++.+|++..+|+++|++|+|+++++.||+.|+++ |.++++|-+.+.+..++.. .-.+-+ .+|.|
T Consensus 385 k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~-~~~~~~~v~iiD 462 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTP-CCDSETLVAIID 462 (534)
T ss_pred cEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhccc-CCCCCceEEEEC
Confidence 88999999999999999999889999999999999999999999999 8999999888887766532 111334 79999
Q ss_pred CCcCh
Q 045638 344 LPNDA 348 (437)
Q Consensus 344 pP~~a 348 (437)
||+..
T Consensus 463 PpR~G 467 (534)
T KOG2187|consen 463 PPRKG 467 (534)
T ss_pred CCccc
Confidence 99955
No 47
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.09 E-value=2.1e-10 Score=111.46 Aligned_cols=123 Identities=17% Similarity=0.202 Sum_probs=94.6
Q ss_pred cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKL-EKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv-~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
+++|||.|.|-|++||.++++|+ .|+.+|.||..++.+..|==.-++ +.+++++.||+.++++.+ .+.+||.||
T Consensus 135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~----~D~sfDaIi 210 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF----DDESFDAII 210 (287)
T ss_pred CCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC----CccccceEe
Confidence 48999999999999999999999 999999999999887655211111 236899999999999875 367899999
Q ss_pred EcCCcCh-------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHHHHHH
Q 045638 342 MNLPNDA-------TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIRIALA 397 (437)
Q Consensus 342 mnpP~~a-------~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~~~L~ 397 (437)
-|||+++ .+|.+++.++++++ | .++|+-...-..--.-|....+.+.|.
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrg---G----rlFHYvG~Pg~ryrG~d~~~gVa~RLr 266 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRG---G----RLFHYVGNPGKRYRGLDLPKGVAERLR 266 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcC---C----cEEEEeCCCCcccccCChhHHHHHHHH
Confidence 9999854 69999999999987 2 478887654321112255666666554
No 48
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.08 E-value=1.3e-09 Score=102.89 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=82.4
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|||+|||+|.+++.+|+. +.+|+|+|+||.+++.+++|++.|++. ++.++++|+.+.+...+ ...+||.|++
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~---~~~~~D~V~~ 117 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMF---PDGSLDRIYL 117 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHc---CccccceEEE
Confidence 78999999999999999875 358999999999999999999999985 79999999944443222 2457999999
Q ss_pred cCCcC------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 045638 343 NLPND------------ATEFLDAFRGIYRDRPEDVKFTFPKTHVYG 377 (437)
Q Consensus 343 npP~~------------a~eFLdaa~~llk~~~~~~~~~~p~IHvY~ 377 (437)
+.|.. ...++..+.++++++ |++.+.+
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg--------G~l~i~~ 156 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPG--------GEIHFAT 156 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCC--------CEEEEEc
Confidence 86531 357899999999987 5777654
No 49
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=7.9e-10 Score=110.88 Aligned_cols=90 Identities=22% Similarity=0.220 Sum_probs=77.9
Q ss_pred cceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
...|+|+|||.|++++.+|+.. .+|+-+|+|..|++.+++|++.|++++ ..++..|..+-+. .+||.||
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~~v~--------~kfd~Ii 229 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYEPVE--------GKFDLII 229 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEeccccccc--------ccccEEE
Confidence 3689999999999999999974 499999999999999999999999984 4788888877542 3799999
Q ss_pred EcCCcC---------hHHHHHHHHHHhcCC
Q 045638 342 MNLPND---------ATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~---------a~eFLdaa~~llk~~ 362 (437)
||||.. +.+++..+.+.|+++
T Consensus 230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred eCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence 999962 238899999999987
No 50
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.07 E-value=5.4e-10 Score=99.82 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=82.2
Q ss_pred ceEEeecCccchhHHHHhc-c--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAK-I--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk-k--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
.+|||+|||+|.+++.+++ . +++|+++|+||.+++.++.+++.++++ +++++++|+.+ +...+ ...||.|+
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~----~~~~D~I~ 78 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL----EEKFDIII 78 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS----STTEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc----CCCeeEEE
Confidence 5799999999999999994 3 569999999999999999999999998 89999999998 43101 15799999
Q ss_pred EcCCcC----hHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 342 MNLPND----ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 342 mnpP~~----a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
++.+.. ...++..+.++++++ |.+.+..+.
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~--------G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPG--------GILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEE--------EEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCC--------cEEEEEECC
Confidence 997642 347788999999986 566655555
No 51
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.07 E-value=1.6e-09 Score=101.01 Aligned_cols=100 Identities=19% Similarity=0.193 Sum_probs=82.2
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
++|+|+|||+|.+++.+|+. +++|+|+|+||.+++.+++|++.+++. +++++++|+.+.+... ...+|.+++
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~-----~~~~d~v~~ 115 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQL-----APAPDRVCI 115 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhC-----CCCCCEEEE
Confidence 68999999999999999864 469999999999999999999999986 7999999997754321 234688888
Q ss_pred cCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 045638 343 NLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGF 378 (437)
Q Consensus 343 npP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F 378 (437)
+.......+++.+.+.++++ |.+-++..
T Consensus 116 ~~~~~~~~~l~~~~~~Lkpg--------G~li~~~~ 143 (196)
T PRK07402 116 EGGRPIKEILQAVWQYLKPG--------GRLVATAS 143 (196)
T ss_pred ECCcCHHHHHHHHHHhcCCC--------eEEEEEee
Confidence 76655578899999999886 56666654
No 52
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.07 E-value=1.9e-09 Score=115.35 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=67.0
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|||+|||+|.+++.+|+. +++|+|+|+||.|++.+++|++.|++.+++.++++|+.+.+. ..+||.||+
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-------~~~fDlIvs 212 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-------KQKFDFIVS 212 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-------CCCccEEEE
Confidence 47999999999999998874 469999999999999999999999998789999999876431 347999999
Q ss_pred cCCcC
Q 045638 343 NLPND 347 (437)
Q Consensus 343 npP~~ 347 (437)
|||+.
T Consensus 213 NPPYi 217 (506)
T PRK01544 213 NPPYI 217 (506)
T ss_pred CCCCC
Confidence 99973
No 53
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.07 E-value=1.7e-09 Score=104.95 Aligned_cols=93 Identities=12% Similarity=0.172 Sum_probs=81.0
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
.+|||+|||+|.+++.+|+.|.+|+++|++|.+++.++++++.+++.++++++++|+.++... ...+||.|+++.
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~-----~~~~fD~V~~~~ 120 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH-----LETPVDLILFHA 120 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh-----cCCCCCEEEehh
Confidence 689999999999999999999999999999999999999999999877899999999886432 246799999875
Q ss_pred Cc----ChHHHHHHHHHHhcCC
Q 045638 345 PN----DATEFLDAFRGIYRDR 362 (437)
Q Consensus 345 P~----~a~eFLdaa~~llk~~ 362 (437)
.. ....++..+.++++++
T Consensus 121 vl~~~~~~~~~l~~~~~~Lkpg 142 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRPG 142 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCCC
Confidence 52 3457899999999987
No 54
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.07 E-value=1.7e-10 Score=115.84 Aligned_cols=100 Identities=28% Similarity=0.317 Sum_probs=79.3
Q ss_pred cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+++|||+|||+|.+||.|++.|+ +|+|+|++|.|++.+++|+++|++.+++.+.. ..+. ...+||.|+.
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~--------~~~~~dlvvA 231 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDL--------VEGKFDLVVA 231 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCT--------CCS-EEEEEE
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--eccc--------ccccCCEEEE
Confidence 38999999999999999999998 89999999999999999999999998776631 1121 1367999999
Q ss_pred cCCcCh-HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 045638 343 NLPNDA-TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKA 381 (437)
Q Consensus 343 npP~~a-~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~ 381 (437)
|.-... ....+.+.++++++ |++-+-.+-.+
T Consensus 232 NI~~~vL~~l~~~~~~~l~~~--------G~lIlSGIl~~ 263 (295)
T PF06325_consen 232 NILADVLLELAPDIASLLKPG--------GYLILSGILEE 263 (295)
T ss_dssp ES-HHHHHHHHHHCHHHEEEE--------EEEEEEEEEGG
T ss_pred CCCHHHHHHHHHHHHHhhCCC--------CEEEEccccHH
Confidence 988755 46778888888886 68888777664
No 55
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.05 E-value=1.9e-09 Score=101.00 Aligned_cols=101 Identities=18% Similarity=0.284 Sum_probs=85.8
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|||+|||+|.+++.+|++ ...|+|+|+++.+++.+++|++.+++. |++++++|+.+++...+ +...+|.|++
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~---~~~~~d~v~~ 93 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF---PDGSLSKVFL 93 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC---CCCceeEEEE
Confidence 68999999999999999986 458999999999999999999999997 89999999998765433 2357999999
Q ss_pred cCCcC------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 045638 343 NLPND------------ATEFLDAFRGIYRDRPEDVKFTFPKTHVYG 377 (437)
Q Consensus 343 npP~~------------a~eFLdaa~~llk~~~~~~~~~~p~IHvY~ 377 (437)
|+|.- ..+|+..+.++++++ |.+++-+
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg--------G~l~~~t 132 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKG--------GVIHFKT 132 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCC--------CEEEEEe
Confidence 98641 157999999999987 6777654
No 56
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.05 E-value=1.6e-09 Score=91.44 Aligned_cols=92 Identities=27% Similarity=0.316 Sum_probs=77.6
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
++|+|+|||.|.+++.++++ +++|+++|+|+.+++.+++|++.+++. +++++.+|+...+... ..+||.|++
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~D~v~~ 94 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS-----LPEPDRVFI 94 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh-----cCCCCEEEE
Confidence 68999999999999999986 359999999999999999999999887 6999999987543321 347999999
Q ss_pred cCCc-ChHHHHHHHHHHhcCC
Q 045638 343 NLPN-DATEFLDAFRGIYRDR 362 (437)
Q Consensus 343 npP~-~a~eFLdaa~~llk~~ 362 (437)
+.+. ...++++.+.+.++++
T Consensus 95 ~~~~~~~~~~l~~~~~~Lk~g 115 (124)
T TIGR02469 95 GGSGGLLQEILEAIWRRLRPG 115 (124)
T ss_pred CCcchhHHHHHHHHHHHcCCC
Confidence 8643 4468899999999986
No 57
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.05 E-value=1.5e-09 Score=102.13 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=83.4
Q ss_pred cceEEeecCccchhHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAk--kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
+.+|+|+|||+|.+++.+|+ .+++|+++|+|+.+++.+++|++.|+++ +++++++|+.++.. ..+||.|+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~-------~~~fDlV~ 117 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ-------EEKFDVVT 117 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-------CCCccEEE
Confidence 37899999999999999886 3569999999999999999999999997 49999999987531 35799999
Q ss_pred EcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 045638 342 MNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGF 378 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F 378 (437)
++--.....++..+.+.++++ |.+.+..+
T Consensus 118 ~~~~~~~~~~l~~~~~~LkpG--------G~lv~~~~ 146 (187)
T PRK00107 118 SRAVASLSDLVELCLPLLKPG--------GRFLALKG 146 (187)
T ss_pred EccccCHHHHHHHHHHhcCCC--------eEEEEEeC
Confidence 986445578999999999987 56666543
No 58
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.05 E-value=1.2e-09 Score=108.52 Aligned_cols=100 Identities=23% Similarity=0.278 Sum_probs=83.6
Q ss_pred ceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.+|||+|||+|.+++.+++.|+ +|+|+|++|.|++.+++|++.|++.+++.++.+|.... ....||.|++|
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~--------~~~~fDlVvan 232 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP--------IEGKADVIVAN 232 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc--------cCCCceEEEEe
Confidence 7999999999999999999876 89999999999999999999999987788888773322 13579999999
Q ss_pred CCcCh-HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 344 LPNDA-TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 344 pP~~a-~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
..... ..+++.+.++++++ |++.+..+..
T Consensus 233 ~~~~~l~~ll~~~~~~Lkpg--------G~li~sgi~~ 262 (288)
T TIGR00406 233 ILAEVIKELYPQFSRLVKPG--------GWLILSGILE 262 (288)
T ss_pred cCHHHHHHHHHHHHHHcCCC--------cEEEEEeCcH
Confidence 87543 47788889999987 6787777654
No 59
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=1.3e-09 Score=114.57 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=84.6
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|||+|||+|.+++.+|+. +.+|+|+|+|+.+++.+++|++.+++. +++++++|+.++.. ...||.|+
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~-------~~~fD~Vl 323 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSP-------EEQPDAIL 323 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccccccc-------CCCCCEEE
Confidence 79999999999999988863 359999999999999999999999997 79999999987642 35799999
Q ss_pred EcCCcCh--------------------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 045638 342 MNLPNDA--------------------------TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKAR 382 (437)
Q Consensus 342 mnpP~~a--------------------------~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~ 382 (437)
+|+|.++ .++|..+.++++++ |++.+.+.+-..
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg--------G~lvystcs~~~ 382 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG--------GVLVYATCSIEP 382 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC--------cEEEEEeCCCCh
Confidence 9999632 14688888888886 677776666543
No 60
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.03 E-value=3.3e-10 Score=105.52 Aligned_cols=77 Identities=26% Similarity=0.355 Sum_probs=61.6
Q ss_pred ceEEeecCccchhHHHHhccCC--E---------EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK--R---------VYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQK 333 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~--~---------V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~ 333 (437)
++|+|.|||+|.|.|.+|..+. . +++.|+++.+++.+++|++..++.+.+.+.+.|+.++. . .
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~---~---~ 103 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP---L---P 103 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG---G---T
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc---c---c
Confidence 6899999999999999998543 4 78999999999999999999999888999999999875 1 2
Q ss_pred CCcccEEEEcCCcC
Q 045638 334 AHKITQVVMNLPND 347 (437)
Q Consensus 334 ~~~fD~VImnpP~~ 347 (437)
...+|.||+|||+.
T Consensus 104 ~~~~d~IvtnPPyG 117 (179)
T PF01170_consen 104 DGSVDAIVTNPPYG 117 (179)
T ss_dssp TSBSCEEEEE--ST
T ss_pred cCCCCEEEECcchh
Confidence 46899999999984
No 61
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.03 E-value=1.6e-09 Score=113.74 Aligned_cols=92 Identities=21% Similarity=0.306 Sum_probs=78.3
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|+|+|||+|.+++.+|+. +.+|+|+|+|+.+++.+++|++.+++. +++++++|+.++...+ ...||.|+
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~-----~~~fD~Vl 325 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKF-----AEKFDKIL 325 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchh-----cccCCEEE
Confidence 78999999999999999985 359999999999999999999999997 5999999998764221 24699999
Q ss_pred EcCCcCh--------------------------HHHHHHHHHHhcCC
Q 045638 342 MNLPNDA--------------------------TEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a--------------------------~eFLdaa~~llk~~ 362 (437)
+|||.+. .++|..+.++++++
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999532 25788888999886
No 62
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.02 E-value=1.6e-09 Score=110.82 Aligned_cols=98 Identities=19% Similarity=0.137 Sum_probs=82.2
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
..|||+|||+|.+++.++++. .+|+++|+|+.|++.+++|++.|++. .+++.+|+.+.+ .++||.||+
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~~--------~~~fDlIvs 267 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSDI--------KGRFDMIIS 267 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccccc--------CCCccEEEE
Confidence 679999999999999999873 49999999999999999999999986 467888876532 357999999
Q ss_pred cCCcC---------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 343 NLPND---------ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 343 npP~~---------a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
|||.. ..+|+..+.+.++++ |.+.+.....
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~Lkpg--------G~L~iVan~~ 306 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSG--------GELRIVANAF 306 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcC--------CEEEEEEeCC
Confidence 99962 268899999999987 6777766543
No 63
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.3e-09 Score=111.56 Aligned_cols=103 Identities=23% Similarity=0.226 Sum_probs=89.8
Q ss_pred cceEEeecCccchhHHHHhcc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkk-g~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
..+|+|.+||+|.-+|.+|.. +. +|++||+||.|++.+++|+++|... +..+++.|+..++.+. ...||.|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~-----~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL-----HRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc-----CCCccEEe
Confidence 368999999999999999996 45 8999999999999999999999666 5788889999998752 36799999
Q ss_pred EcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 342 MNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
+||-.+...|+|++++..+.+ |++++-+-..
T Consensus 127 iDPFGSPaPFlDaA~~s~~~~--------G~l~vTATD~ 157 (380)
T COG1867 127 IDPFGSPAPFLDAALRSVRRG--------GLLCVTATDT 157 (380)
T ss_pred cCCCCCCchHHHHHHHHhhcC--------CEEEEEeccc
Confidence 999999999999999999986 5777766544
No 64
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.02 E-value=2.2e-09 Score=100.89 Aligned_cols=90 Identities=18% Similarity=0.118 Sum_probs=77.4
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
..|||+|||+|.+++.+|++|.+|+|+|++|.+++.++++++.+++. ++++..+|..++. ....||.|+++.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~-------~~~~fD~I~~~~ 103 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLT-------FDGEYDFILSTV 103 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCC-------cCCCcCEEEEec
Confidence 78999999999999999999999999999999999999999999986 6999999987642 134699998875
Q ss_pred Cc------ChHHHHHHHHHHhcCC
Q 045638 345 PN------DATEFLDAFRGIYRDR 362 (437)
Q Consensus 345 P~------~a~eFLdaa~~llk~~ 362 (437)
.. ....++..+.++++++
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lkpg 127 (197)
T PRK11207 104 VLMFLEAKTIPGLIANMQRCTKPG 127 (197)
T ss_pred chhhCCHHHHHHHHHHHHHHcCCC
Confidence 42 3468899999999987
No 65
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.02 E-value=3.8e-09 Score=102.35 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=81.7
Q ss_pred ceEEeecCccchhHHHHhc--c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAK--I-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk--k-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
..|||+|||+|+-++.+|+ . +.+|+++|+||++++.+++|++.|++.++++++++|+.+.+..+......+.||.|+
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~Vf 149 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAF 149 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEE
Confidence 7899999999997776665 3 359999999999999999999999999899999999999987654321235799999
Q ss_pred EcCCcC-hHHHHHHHHHHhcCC
Q 045638 342 MNLPND-ATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~-a~eFLdaa~~llk~~ 362 (437)
+|.+.. -..+++.+.++++++
T Consensus 150 iDa~k~~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 150 VDADKPNYVHFHEQLLKLVKVG 171 (234)
T ss_pred ECCCHHHHHHHHHHHHHhcCCC
Confidence 997642 357888889999986
No 66
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=99.01 E-value=1.4e-09 Score=112.57 Aligned_cols=100 Identities=30% Similarity=0.342 Sum_probs=79.7
Q ss_pred eEEeecCccchhHHHHhcc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 266 MTGDVFAGVGPISIPAAKI--V-KRVYANDLNPYAVDYLERNSVLNKLEK-KIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAkk--g-~~V~A~DlNP~Ave~L~~NaklNkv~~-~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
+|||.+||+|--||.+|+. + ..|++||+||+|++.+++|+++|++++ ++++.++||..++.. ....||.|=
T Consensus 52 ~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~-----~~~~fD~ID 126 (377)
T PF02005_consen 52 RVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS-----RQERFDVID 126 (377)
T ss_dssp EEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH-----STT-EEEEE
T ss_pred eEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh-----ccccCCEEE
Confidence 7999999999999999996 3 399999999999999999999999997 799999999998741 256799999
Q ss_pred EcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 045638 342 MNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGF 378 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F 378 (437)
+||-.++..|||++.+..+.+ |++.+-+-
T Consensus 127 lDPfGSp~pfldsA~~~v~~g--------Gll~vTaT 155 (377)
T PF02005_consen 127 LDPFGSPAPFLDSALQAVKDG--------GLLCVTAT 155 (377)
T ss_dssp E--SS--HHHHHHHHHHEEEE--------EEEEEEE-
T ss_pred eCCCCCccHhHHHHHHHhhcC--------CEEEEecc
Confidence 999999999999999999986 56666544
No 67
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.00 E-value=5.6e-09 Score=101.31 Aligned_cols=75 Identities=25% Similarity=0.257 Sum_probs=63.7
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
..|+|+|||+|.+++.+++.. ..|+++|+||.+++.+++|++ ++...++.++++|+.+.+. ..+||.|++
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~-------~~~fD~Iv~ 181 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLP-------GGRFDLIVS 181 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCC-------CCceeEEEE
Confidence 479999999999999999864 699999999999999999999 4444579999999855321 357999999
Q ss_pred cCCcC
Q 045638 343 NLPND 347 (437)
Q Consensus 343 npP~~ 347 (437)
|||+.
T Consensus 182 npPy~ 186 (275)
T PRK09328 182 NPPYI 186 (275)
T ss_pred CCCcC
Confidence 99984
No 68
>PRK04266 fibrillarin; Provisional
Probab=99.00 E-value=6e-09 Score=100.82 Aligned_cols=144 Identities=15% Similarity=0.012 Sum_probs=94.1
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
++|+|+|||+|.+++.+|+.. .+|+|+|++|.+++.+.++++.. .|+.++.+|+.+.... .. ...+||.|+.
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~-~~--l~~~~D~i~~ 147 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERY-AH--VVEKVDVIYQ 147 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchh-hh--ccccCCEEEE
Confidence 689999999999999999863 48999999999999999888753 3789999998752100 00 1245999998
Q ss_pred cCCc--ChHHHHHHHHHHhcCCCCCCCCCccEEEE-EeccCCCCCcccHHHHHHHHHHhcccceeEEEeEEecCCCc---
Q 045638 343 NLPN--DATEFLDAFRGIYRDRPEDVKFTFPKTHV-YGFSKARDPEFDFHERIRIALAEVAVNVEMRRVRLVAPGKW--- 416 (437)
Q Consensus 343 npP~--~a~eFLdaa~~llk~~~~~~~~~~p~IHv-Y~F~k~~d~~~d~~eRI~~~L~~~~~~v~vr~VR~VAP~k~--- 416 (437)
+.+. ....++..+.++++++ |.+-+ -.+.. .+...+. .|..+...+.....++..++.+....+
T Consensus 148 d~~~p~~~~~~L~~~~r~LKpG--------G~lvI~v~~~~-~d~~~~~-~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~ 217 (226)
T PRK04266 148 DVAQPNQAEIAIDNAEFFLKDG--------GYLLLAIKARS-IDVTKDP-KEIFKEEIRKLEEGGFEILEVVDLEPYHKD 217 (226)
T ss_pred CCCChhHHHHHHHHHHHhcCCC--------cEEEEEEeccc-ccCcCCH-HHHHHHHHHHHHHcCCeEEEEEcCCCCcCC
Confidence 8764 2345688999999987 45444 22211 1111111 122211112223345666666666555
Q ss_pred EEEEEEEE
Q 045638 417 MLFASFVL 424 (437)
Q Consensus 417 m~cisFrL 424 (437)
||++.++.
T Consensus 218 h~~~v~~~ 225 (226)
T PRK04266 218 HAAVVARK 225 (226)
T ss_pred eEEEEEEc
Confidence 99998874
No 69
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.00 E-value=9.2e-09 Score=107.73 Aligned_cols=75 Identities=20% Similarity=0.103 Sum_probs=64.2
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|+|+|||+|.+++.+++. +++|+|+|+||.|++.+++|++.|+. +++++++|..+... . ...+||.|++
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l--~---~~~~FDLIVS 325 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDM--P---SEGKWDIIVS 325 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcccc--c---cCCCccEEEE
Confidence 68999999999999998874 56999999999999999999999986 69999999866421 0 1246999999
Q ss_pred cCCc
Q 045638 343 NLPN 346 (437)
Q Consensus 343 npP~ 346 (437)
|||+
T Consensus 326 NPPY 329 (423)
T PRK14966 326 NPPY 329 (423)
T ss_pred CCCC
Confidence 9998
No 70
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.00 E-value=3e-09 Score=99.77 Aligned_cols=89 Identities=16% Similarity=0.055 Sum_probs=74.6
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
.+|||+|||+|.+++++|++|..|+|+|++|.+++.++++++.+++. +....+|..... + ..+||.|+++.
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~---~----~~~fD~I~~~~ 102 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAA---L----NEDYDFIFSTV 102 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcc---c----cCCCCEEEEec
Confidence 68999999999999999999999999999999999999999999885 777778875431 1 34699999886
Q ss_pred Cc------ChHHHHHHHHHHhcCC
Q 045638 345 PN------DATEFLDAFRGIYRDR 362 (437)
Q Consensus 345 P~------~a~eFLdaa~~llk~~ 362 (437)
+. ....++..+.++++++
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~Lkpg 126 (195)
T TIGR00477 103 VFMFLQAGRVPEIIANMQAHTRPG 126 (195)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCC
Confidence 53 2357888999999987
No 71
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.97 E-value=4.1e-09 Score=110.46 Aligned_cols=95 Identities=17% Similarity=0.275 Sum_probs=78.3
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|+|+|||+|..++.+|+. ..+|+|+|+++..++.+++|++.+++. +++++++|+.+...... ....+||.|+
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~--~~~~~fD~Vl 330 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKP--QWRGYFDRIL 330 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccc--cccccCCEEE
Confidence 89999999999999999885 248999999999999999999999998 69999999987642100 0135799999
Q ss_pred EcCCcCh--------------------------HHHHHHHHHHhcCC
Q 045638 342 MNLPNDA--------------------------TEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a--------------------------~eFLdaa~~llk~~ 362 (437)
+|+|-++ .+.|+.+.++++++
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg 377 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG 377 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999532 36688888888886
No 72
>PLN02476 O-methyltransferase
Probab=98.96 E-value=8.5e-09 Score=102.90 Aligned_cols=98 Identities=11% Similarity=0.103 Sum_probs=84.8
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
.+||++|+|+|+.|+.+|+. +.+|+++|.||++++.+++|++.+++.++|+++.+|+.+.++.+..+....+||.|+
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VF 199 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAF 199 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEE
Confidence 78999999999999999973 448999999999999999999999999899999999999987754221235799999
Q ss_pred EcCCcC-hHHHHHHHHHHhcCC
Q 045638 342 MNLPND-ATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~-a~eFLdaa~~llk~~ 362 (437)
+|.+.. -.++++.+.++++++
T Consensus 200 IDa~K~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 200 VDADKRMYQDYFELLLQLVRVG 221 (278)
T ss_pred ECCCHHHHHHHHHHHHHhcCCC
Confidence 999874 368888889999886
No 73
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=7.5e-09 Score=108.30 Aligned_cols=93 Identities=18% Similarity=0.233 Sum_probs=77.4
Q ss_pred cceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++.|||+|||+|..++.+++.+ .+|+|+|+||.+++.+++|++.+++. ++++++|+.+... .. ...+||.|+
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~-~~---~~~~fD~Vl 318 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQ-WW---DGQPFDRIL 318 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchh-hc---ccCCCCEEE
Confidence 3899999999999999999864 59999999999999999999999985 7899999986432 11 135799999
Q ss_pred EcCCcCh--------------------------HHHHHHHHHHhcCC
Q 045638 342 MNLPNDA--------------------------TEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a--------------------------~eFLdaa~~llk~~ 362 (437)
+|||.++ .++|..+.++++++
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG 365 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG 365 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999642 25788888888886
No 74
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=7.3e-09 Score=108.80 Aligned_cols=92 Identities=15% Similarity=0.230 Sum_probs=77.0
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|||+|||+|..++.+|.. +..|+|+|+++..++.+++|++..++. +++++++|+.++... . ...||.|+
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~-~----~~~fD~Vl 312 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEY-V----QDTFDRIL 312 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhh-h----hccCCEEE
Confidence 78999999999999998874 459999999999999999999999997 699999999876321 1 35699999
Q ss_pred EcCCcCh--------------------------HHHHHHHHHHhcCC
Q 045638 342 MNLPNDA--------------------------TEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a--------------------------~eFLdaa~~llk~~ 362 (437)
+|+|-++ .+.|..+.+.++++
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999742 23477788888876
No 75
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.93 E-value=6.3e-09 Score=103.13 Aligned_cols=98 Identities=13% Similarity=0.026 Sum_probs=79.9
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
.+|||+|||+|.+++++|++|.+|+|+|+||.|++.+++|++.+++ ++++...|+.+.. ...+||.|+++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~-------~~~~fD~I~~~~ 192 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS-------IQEEYDFILSTV 192 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc-------ccCCccEEEEcc
Confidence 5899999999999999999999999999999999999999999998 5888888886532 135799998874
Q ss_pred C------cChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 345 P------NDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 345 P------~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
. .....++..+.++++++ |++-+.++.
T Consensus 193 vl~~l~~~~~~~~l~~~~~~Lkpg--------G~~l~v~~~ 225 (287)
T PRK12335 193 VLMFLNRERIPAIIKNMQEHTNPG--------GYNLIVCAM 225 (287)
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCC--------cEEEEEEec
Confidence 3 23457788888888886 565554443
No 76
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.93 E-value=3.3e-09 Score=100.58 Aligned_cols=89 Identities=16% Similarity=0.114 Sum_probs=73.4
Q ss_pred ceEEeecCccchhHHHHhccC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg---~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|||+|||+|++++.+|+.. .+|+++|++|.+++.+++|++.++++ +++++++|+.+.... ...||.|+
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~~------~~~fD~Ii 151 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWEP------LAPYDRIY 151 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCcc------cCCCCEEE
Confidence 689999999999999999863 26999999999999999999999996 799999999765321 34799999
Q ss_pred EcCCcChHHHHHHHHHHhcCC
Q 045638 342 MNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~ 362 (437)
++++.. ...+.+.+.++++
T Consensus 152 ~~~~~~--~~~~~~~~~L~~g 170 (215)
T TIGR00080 152 VTAAGP--KIPEALIDQLKEG 170 (215)
T ss_pred EcCCcc--cccHHHHHhcCcC
Confidence 997652 2345667778876
No 77
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.92 E-value=5.7e-09 Score=98.65 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=74.8
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|||+|||+|+++..+|+. +.+|+++|++|.+++.+++|++.+++.++++++++|+.+.+.. ...||.|+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~------~~~fD~Ii 147 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK------HAPFDAII 147 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc------CCCccEEE
Confidence 68999999999999988874 3599999999999999999999999977899999999865421 35799999
Q ss_pred EcCCcChHHHHHHHHHHhcCC
Q 045638 342 MNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~ 362 (437)
++-... .+.+.+.+.++++
T Consensus 148 ~~~~~~--~~~~~l~~~L~~g 166 (205)
T PRK13944 148 VTAAAS--TIPSALVRQLKDG 166 (205)
T ss_pred EccCcc--hhhHHHHHhcCcC
Confidence 997642 3446677888876
No 78
>PLN02244 tocopherol O-methyltransferase
Probab=98.91 E-value=7.3e-09 Score=105.37 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=85.7
Q ss_pred ceEEeecCccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.+|||+|||+|.+++.++++ +++|+++|++|.+++.++++++.+++.++++++++|+.+.. + +.+.||.|++.
T Consensus 120 ~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~---~---~~~~FD~V~s~ 193 (340)
T PLN02244 120 KRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP---F---EDGQFDLVWSM 193 (340)
T ss_pred CeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC---C---CCCCccEEEEC
Confidence 57999999999999999986 78999999999999999999999999878999999997642 1 24689999885
Q ss_pred CCc----ChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 344 LPN----DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 344 pP~----~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
.-. ....++..+.++++++ |.+.+.+|..
T Consensus 194 ~~~~h~~d~~~~l~e~~rvLkpG--------G~lvi~~~~~ 226 (340)
T PLN02244 194 ESGEHMPDKRKFVQELARVAAPG--------GRIIIVTWCH 226 (340)
T ss_pred CchhccCCHHHHHHHHHHHcCCC--------cEEEEEEecc
Confidence 321 3468999999999987 6777777654
No 79
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.91 E-value=1.6e-08 Score=98.31 Aligned_cols=94 Identities=26% Similarity=0.301 Sum_probs=77.6
Q ss_pred ceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.+|+|+|||+|.+++.+++.|+ +|+|+|+||.+++.+++|++.|++.+++.+..+|. +||.|++|
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~--------------~fD~Vvan 186 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL--------------KADVIVAN 186 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC--------------CcCEEEEc
Confidence 6899999999999999988887 69999999999999999999999965666554432 48999999
Q ss_pred CCcC-hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 344 LPND-ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 344 pP~~-a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
.... ...+++.+.++++++ |++.+..+..
T Consensus 187 i~~~~~~~l~~~~~~~Lkpg--------G~lilsgi~~ 216 (250)
T PRK00517 187 ILANPLLELAPDLARLLKPG--------GRLILSGILE 216 (250)
T ss_pred CcHHHHHHHHHHHHHhcCCC--------cEEEEEECcH
Confidence 7654 347788888999987 6777766654
No 80
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.90 E-value=5.4e-09 Score=95.48 Aligned_cols=82 Identities=21% Similarity=0.211 Sum_probs=67.3
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
+.|+|+|||+|.++..+++++++|+|+|+|+.+++.+++|+.. . ++++++++|+.++.. +...+|.|+.||
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~-~~v~ii~~D~~~~~~------~~~~~d~vi~n~ 85 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--A-DNLTVIHGDALKFDL------PKLQPYKVVGNL 85 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--C-CCEEEEECchhcCCc------cccCCCEEEECC
Confidence 6899999999999999999988999999999999999999854 2 379999999988642 123589999999
Q ss_pred CcCh-HHHHHHH
Q 045638 345 PNDA-TEFLDAF 355 (437)
Q Consensus 345 P~~a-~eFLdaa 355 (437)
|+.. .+.+..+
T Consensus 86 Py~~~~~~i~~~ 97 (169)
T smart00650 86 PYNISTPILFKL 97 (169)
T ss_pred CcccHHHHHHHH
Confidence 9854 3334433
No 81
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.90 E-value=1.2e-08 Score=105.99 Aligned_cols=100 Identities=13% Similarity=0.241 Sum_probs=86.0
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
..+||+|||+|.|++.+|++ ...++|+|+++.+++.+.+++..++++ |+.++++|+..++.. + +..++|.|++
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~-~---~~~s~D~I~l 198 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLEL-L---PSNSVEKIFV 198 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhh-C---CCCceeEEEE
Confidence 68999999999999999986 459999999999999999999999998 799999999987643 2 3578999999
Q ss_pred cCCcC----------hHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 045638 343 NLPND----------ATEFLDAFRGIYRDRPEDVKFTFPKTHVYG 377 (437)
Q Consensus 343 npP~~----------a~eFLdaa~~llk~~~~~~~~~~p~IHvY~ 377 (437)
+.|.- ...|+..+.++++++ |.+|+-+
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpG--------G~l~l~T 235 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPG--------GTLELRT 235 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCC--------cEEEEEE
Confidence 98752 268999999999987 5676643
No 82
>PHA03412 putative methyltransferase; Provisional
Probab=98.90 E-value=3.9e-09 Score=103.15 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=93.6
Q ss_pred cceEEeecCccchhHHHHhcc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCccc
Q 045638 264 VQMTGDVFAGVGPISIPAAKI-----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 338 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkk-----g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD 338 (437)
+.+|||++||+|.|++.++++ ...|+|+|+||.|++.+++|+. ++.++++|+.... . ..+||
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~---~----~~~FD 116 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE---F----DTLFD 116 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc---c----cCCcc
Confidence 378999999999999998874 3489999999999999998852 4789999987642 1 35799
Q ss_pred EEEEcCCcC----------------hHHHHHHHHHHhcCCCC----C-CCCCccEEEEEeccCCCCCcccHHHHHHHHHH
Q 045638 339 QVVMNLPND----------------ATEFLDAFRGIYRDRPE----D-VKFTFPKTHVYGFSKARDPEFDFHERIRIALA 397 (437)
Q Consensus 339 ~VImnpP~~----------------a~eFLdaa~~llk~~~~----~-~~~~~p~IHvY~F~k~~d~~~d~~eRI~~~L~ 397 (437)
+||+|||+. ...++..+.++++++.- . ......--|.|....... ........++-+
T Consensus 117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~~~~~~--~~~~~~~~~~~~ 194 (241)
T PHA03412 117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQDESTT--SSKCKKFLDETG 194 (241)
T ss_pred EEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceeeccCcc--cHHHHHHHHhcC
Confidence 999999984 12467777776666410 0 000001123332222211 111111111111
Q ss_pred ---hcccce----eEEEeEEecCCCcEEEEEEEEccc
Q 045638 398 ---EVAVNV----EMRRVRLVAPGKWMLFASFVLPES 427 (437)
Q Consensus 398 ---~~~~~v----~vr~VR~VAP~k~m~cisFrLp~~ 427 (437)
..+..+ -...-+.|+|-...+|++|.=++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (241)
T PHA03412 195 LEMNPGCGIDTGYYLEDWKGVKPLCEVVCMEFNEPEP 231 (241)
T ss_pred eeecCCCCccceeehhhccCCCccceEEEEeecCcCh
Confidence 011112 123457899999999999987764
No 83
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.89 E-value=5.4e-09 Score=106.21 Aligned_cols=82 Identities=18% Similarity=0.145 Sum_probs=65.1
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEE-ccHHHHHHHHHHhhcCCcccEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLN-KLEKKIEVFN-MDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklN-kv~~~V~vi~-gDa~~~l~~~~~~~~~~~fD~V 340 (437)
..|||+|||+|.++..++.+ +..++|+|++|.|++.+++|++.| ++.++|++.. .|..+....... ....||.|
T Consensus 116 ~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~--~~~~fDli 193 (321)
T PRK11727 116 VRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH--KNERFDAT 193 (321)
T ss_pred ceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc--cCCceEEE
Confidence 36999999999887776654 679999999999999999999999 8988898864 555554432211 24579999
Q ss_pred EEcCCcCh
Q 045638 341 VMNLPNDA 348 (437)
Q Consensus 341 ImnpP~~a 348 (437)
++|||+.+
T Consensus 194 vcNPPf~~ 201 (321)
T PRK11727 194 LCNPPFHA 201 (321)
T ss_pred EeCCCCcC
Confidence 99999843
No 84
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.89 E-value=1.4e-08 Score=96.21 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=82.6
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
.+|||+|||+|.+++.+++. +++|+++|++|.+++.+++|++.++++ +++++++|+.+.. + +..+||.|+
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~---~---~~~~fD~V~ 119 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAMELP---F---DDNSFDYVT 119 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhcCC---C---CCCCccEEE
Confidence 68999999999999999875 359999999999999999999988885 7999999997642 1 245799999
Q ss_pred EcCCc----ChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 342 MNLPN----DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 342 mnpP~----~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
++... ...+++..+.++++++ |++-+.++..
T Consensus 120 ~~~~l~~~~~~~~~l~~~~~~Lk~g--------G~l~~~~~~~ 154 (231)
T TIGR02752 120 IGFGLRNVPDYMQVLREMYRVVKPG--------GKVVCLETSQ 154 (231)
T ss_pred EecccccCCCHHHHHHHHHHHcCcC--------eEEEEEECCC
Confidence 97543 2457888899999887 6777666544
No 85
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.88 E-value=1e-08 Score=107.26 Aligned_cols=95 Identities=20% Similarity=0.201 Sum_probs=76.3
Q ss_pred cceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
+++|+|+|||+|.+++.+|+. +++|+|+|+++.+++.+++|++.+++..+++...+|+..... .. ...+||.|+
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~-~~---~~~~fD~Vl 314 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ-WA---ENEQFDRIL 314 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc-cc---cccccCEEE
Confidence 389999999999999999985 359999999999999999999999987445557777754321 00 135799999
Q ss_pred EcCCcCh--------------------------HHHHHHHHHHhcCC
Q 045638 342 MNLPNDA--------------------------TEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a--------------------------~eFLdaa~~llk~~ 362 (437)
+|+|-++ .++|..+.++++++
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999643 36888899999987
No 86
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.88 E-value=1.5e-08 Score=102.94 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=82.9
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
.+|||+|||.|.++.++|+.|+.|+|+|+++.+++.++++++.+....+++++++|+.++.. ..++||.|++.-
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------~~~~FD~Vi~~~ 206 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------EGRKFDAVLSLE 206 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------ccCCCCEEEEhh
Confidence 57999999999999999999999999999999999999999888776689999999987632 246799998753
Q ss_pred C----cChHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 045638 345 P----NDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGF 378 (437)
Q Consensus 345 P----~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F 378 (437)
. .....|+..+.++++++ |.+-+-++
T Consensus 207 vLeHv~d~~~~L~~l~r~LkPG--------G~liist~ 236 (322)
T PLN02396 207 VIEHVANPAEFCKSLSALTIPN--------GATVLSTI 236 (322)
T ss_pred HHHhcCCHHHHHHHHHHHcCCC--------cEEEEEEC
Confidence 2 13468999999999987 56655544
No 87
>PHA03411 putative methyltransferase; Provisional
Probab=98.86 E-value=2.3e-08 Score=99.69 Aligned_cols=70 Identities=23% Similarity=0.217 Sum_probs=60.2
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|||+|||+|.+++.++++ +.+|+++|+||.+++.+++|. . +++++++|++++.. ..+||.||+
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~D~~e~~~-------~~kFDlIIs 132 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----P-EAEWITSDVFEFES-------NEKFDVVIS 132 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----c-CCEEEECchhhhcc-------cCCCcEEEE
Confidence 68999999999999998875 469999999999999998874 2 58899999998742 357999999
Q ss_pred cCCcC
Q 045638 343 NLPND 347 (437)
Q Consensus 343 npP~~ 347 (437)
|||+.
T Consensus 133 NPPF~ 137 (279)
T PHA03411 133 NPPFG 137 (279)
T ss_pred cCCcc
Confidence 99984
No 88
>PLN02672 methionine S-methyltransferase
Probab=98.83 E-value=6.6e-09 Score=119.17 Aligned_cols=78 Identities=27% Similarity=0.359 Sum_probs=66.4
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCC---------------CcEEEEEccHHHHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLE---------------KKIEVFNMDGRRFIDA 327 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNkv~---------------~~V~vi~gDa~~~l~~ 327 (437)
.+|+|+|||+|.+++.+|++. ++|+|+|+||.|++.+++|+++|+++ ++++++++|..+.+..
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~ 199 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD 199 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence 479999999999999999863 59999999999999999999998653 4799999999876531
Q ss_pred HHHhhcCCcccEEEEcCCcC
Q 045638 328 MFASQKAHKITQVVMNLPND 347 (437)
Q Consensus 328 ~~~~~~~~~fD~VImnpP~~ 347 (437)
....||.||.|||+-
T Consensus 200 -----~~~~fDlIVSNPPYI 214 (1082)
T PLN02672 200 -----NNIELDRIVGCIPQI 214 (1082)
T ss_pred -----cCCceEEEEECCCcC
Confidence 123699999999984
No 89
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.83 E-value=1.3e-08 Score=105.11 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=68.4
Q ss_pred ceEEeecCccchhHHHHhccCC-----------------------------------------EEEEEeCCHHHHHHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK-----------------------------------------RVYANDLNPYAVDYLER 303 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~-----------------------------------------~V~A~DlNP~Ave~L~~ 303 (437)
+.++|.|||+|+|.|.||..+. ..++.|++|.+++.++.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 6899999999999999998763 37799999999999999
Q ss_pred HHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcC
Q 045638 304 NSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 347 (437)
Q Consensus 304 NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~ 347 (437)
|++.-|+.+.|++.++|+.++-.. ...+|.||+|||+.
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~~~------~~~~gvvI~NPPYG 310 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLKEP------LEEYGVVISNPPYG 310 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCCCC------CCcCCEEEeCCCcc
Confidence 999999999999999999987431 14789999999984
No 90
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.81 E-value=4.9e-08 Score=93.34 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=85.4
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
..||++|+|+|+-++.+|+. +++|+++|+||+.++.+++|++..++.++|+++.+|+.+++..+......+.||.|+
T Consensus 47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VF 126 (205)
T PF01596_consen 47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVF 126 (205)
T ss_dssp SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEE
T ss_pred ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEE
Confidence 88999999999999999974 569999999999999999999999998899999999999998876432235799999
Q ss_pred EcCCcC-hHHHHHHHHHHhcCC
Q 045638 342 MNLPND-ATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~-a~eFLdaa~~llk~~ 362 (437)
+|-... -..+++.+.++++++
T Consensus 127 iDa~K~~y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 127 IDADKRNYLEYFEKALPLLRPG 148 (205)
T ss_dssp EESTGGGHHHHHHHHHHHEEEE
T ss_pred EcccccchhhHHHHHhhhccCC
Confidence 998764 468899999999986
No 91
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.80 E-value=7.2e-08 Score=75.91 Aligned_cols=91 Identities=18% Similarity=0.289 Sum_probs=74.3
Q ss_pred eEEeecCccchhHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 266 MTGDVFAGVGPISIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk-kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
+|+|+|||.|.++..+++ .+.+++++|+++.+++.++++.+.++.. ++.++.+|..+.... ....+|.|++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLAD-NVEVLKGDAEELPPE-----ADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccccc-ceEEEEcChhhhccc-----cCCceEEEEEcc
Confidence 489999999999999998 4569999999999999999766555544 799999999887531 245799999999
Q ss_pred CcCh-----HHHHHHHHHHhcCC
Q 045638 345 PNDA-----TEFLDAFRGIYRDR 362 (437)
Q Consensus 345 P~~a-----~eFLdaa~~llk~~ 362 (437)
|... ..++..+...++++
T Consensus 75 ~~~~~~~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 75 PLHHLVEDLARFLEEARRLLKPG 97 (107)
T ss_pred ceeehhhHHHHHHHHHHHHcCCC
Confidence 8755 67788888888765
No 92
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.80 E-value=4.9e-08 Score=92.18 Aligned_cols=91 Identities=22% Similarity=0.220 Sum_probs=80.9
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
++++|+|||+|..++.+|.. .++|||+|-|+++++.+++|++..+++ |++++.+||-+.+.. ..++|.|++
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap~~L~~------~~~~daiFI 108 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAPEALPD------LPSPDAIFI 108 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccchHhhcC------CCCCCEEEE
Confidence 78999999999999999953 469999999999999999999999976 899999999998863 226999999
Q ss_pred cCCcChHHHHHHHHHHhcCC
Q 045638 343 NLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 343 npP~~a~eFLdaa~~llk~~ 362 (437)
+==....+.|+.+...++++
T Consensus 109 GGg~~i~~ile~~~~~l~~g 128 (187)
T COG2242 109 GGGGNIEEILEAAWERLKPG 128 (187)
T ss_pred CCCCCHHHHHHHHHHHcCcC
Confidence 97777788899999999986
No 93
>PRK04457 spermidine synthase; Provisional
Probab=98.79 E-value=5.6e-08 Score=95.80 Aligned_cols=103 Identities=18% Similarity=0.209 Sum_probs=85.3
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
..|||+|||.|.++..+++. +.+|+++|+||..++.++++...+...++++++.+|+.+++... ..+||.|++
T Consensus 68 ~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-----~~~yD~I~~ 142 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-----RHSTDVILV 142 (262)
T ss_pred CEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC-----CCCCCEEEE
Confidence 68999999999999988875 46999999999999999999987776568999999999998642 357999999
Q ss_pred cCCcC--------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 343 NLPND--------ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 343 npP~~--------a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
|.... ..+|+..+.+.++++ |++-+-.|..
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pg--------Gvlvin~~~~ 180 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSD--------GIFVVNLWSR 180 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCC--------cEEEEEcCCC
Confidence 86332 369999999999987 5776655544
No 94
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.79 E-value=7e-09 Score=100.13 Aligned_cols=82 Identities=22% Similarity=0.221 Sum_probs=72.7
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
++|+|.|||+|.-+|..|.+++.|+|+|++|.-+.++++|++.-|++++|++++||..+....+... ...+|.|.+-|
T Consensus 96 ~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~--K~~~~~vf~sp 173 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD--KIKYDCVFLSP 173 (263)
T ss_pred chhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh--hheeeeeecCC
Confidence 7899999999999999999999999999999999999999999999999999999999987654322 23478999999
Q ss_pred CcCh
Q 045638 345 PNDA 348 (437)
Q Consensus 345 P~~a 348 (437)
|-+.
T Consensus 174 pwgg 177 (263)
T KOG2730|consen 174 PWGG 177 (263)
T ss_pred CCCC
Confidence 8644
No 95
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.78 E-value=1e-08 Score=113.61 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=66.9
Q ss_pred ceEEeecCccchhHHHHhcc--------------------------------------------CCEEEEEeCCHHHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAKI--------------------------------------------VKRVYANDLNPYAVDY 300 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--------------------------------------------g~~V~A~DlNP~Ave~ 300 (437)
+.++|.|||+|.|.|.||.. ..+++|+|++|.|++.
T Consensus 192 ~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~ 271 (702)
T PRK11783 192 TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQA 271 (702)
T ss_pred CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHH
Confidence 78999999999999999862 1269999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCc
Q 045638 301 LERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN 346 (437)
Q Consensus 301 L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~ 346 (437)
++.|++.+++.+.+++.++|+.++.... ....+|.||+|||+
T Consensus 272 A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPPY 313 (702)
T PRK11783 272 ARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCCC
Confidence 9999999999888999999998864211 12469999999998
No 96
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.78 E-value=5.2e-08 Score=94.51 Aligned_cols=99 Identities=15% Similarity=0.120 Sum_probs=80.5
Q ss_pred ceEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEE
Q 045638 265 QMTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V 340 (437)
.+|||+|||+|..++.+++ .+++|+|+|++|.+++.+++|+..++...+++++++|+.+.. ...+|.|
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~D~v 129 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--------IENASMV 129 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC--------CCCCCEE
Confidence 5799999999999998876 256999999999999999999999888778999999987652 2358999
Q ss_pred EEcCCc------ChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 341 VMNLPN------DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 341 ImnpP~------~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
+++... ....++..+.+.++++ |.+-+.+..
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~LkpG--------G~l~l~e~~ 166 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLNPG--------GALVLSEKF 166 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcCCC--------CEEEEEEec
Confidence 988542 1247788899999987 577666633
No 97
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.77 E-value=3.2e-08 Score=96.62 Aligned_cols=102 Identities=15% Similarity=0.092 Sum_probs=83.9
Q ss_pred cccceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 262 FFVQMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 262 FF~e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
+.+.+|||+|||.|.+|.++|+.|+.|+|+|+++.+++.++.-+..|++. +...+..+.+... ..++||+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~------~~~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLAS------AGGQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHh------cCCCccEEE
Confidence 35689999999999999999999999999999999999999999999995 7777777777653 247899988
Q ss_pred EcC----CcChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 342 MNL----PNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 342 mnp----P~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
+.= ......|+.+..++++++ |++-+-+..
T Consensus 130 cmEVlEHv~dp~~~~~~c~~lvkP~--------G~lf~STin 163 (243)
T COG2227 130 CMEVLEHVPDPESFLRACAKLVKPG--------GILFLSTIN 163 (243)
T ss_pred EhhHHHccCCHHHHHHHHHHHcCCC--------cEEEEeccc
Confidence 652 234678999999999987 455554444
No 98
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.77 E-value=3.5e-08 Score=95.87 Aligned_cols=103 Identities=18% Similarity=0.256 Sum_probs=79.8
Q ss_pred ceEEeecCccchhHHHHhcc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
.+|||++||+|-+++.++++ + .+|+++|++|.+++.+++.++..+.. +|+++++|+.+..- ++.+||.|+
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~------~d~sfD~v~ 121 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF------PDNSFDAVT 121 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-------TT-EEEEE
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC------CCCceeEEE
Confidence 57999999999999999885 2 49999999999999999999998887 89999999988631 257899998
Q ss_pred EcC-----CcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 045638 342 MNL-----PNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARD 383 (437)
Q Consensus 342 mnp-----P~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d 383 (437)
|-. |. ....+.++.++++++ |.+-+.+|++...
T Consensus 122 ~~fglrn~~d-~~~~l~E~~RVLkPG--------G~l~ile~~~p~~ 159 (233)
T PF01209_consen 122 CSFGLRNFPD-RERALREMYRVLKPG--------GRLVILEFSKPRN 159 (233)
T ss_dssp EES-GGG-SS-HHHHHHHHHHHEEEE--------EEEEEEEEEB-SS
T ss_pred HHhhHHhhCC-HHHHHHHHHHHcCCC--------eEEEEeeccCCCC
Confidence 753 33 567899999999997 7999999988654
No 99
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.76 E-value=2.4e-08 Score=100.23 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=67.3
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
+.|+|+|||.|.++..+++.+.+|+|+|+++.+++.+++|+..++..++++++++|+.++- ...+|.||.||
T Consensus 38 ~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~--------~~~~d~VvaNl 109 (294)
T PTZ00338 38 DTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE--------FPYFDVCVANV 109 (294)
T ss_pred CEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc--------ccccCEEEecC
Confidence 7899999999999999999888999999999999999999998876568999999998752 13589999999
Q ss_pred CcC
Q 045638 345 PND 347 (437)
Q Consensus 345 P~~ 347 (437)
|+.
T Consensus 110 PY~ 112 (294)
T PTZ00338 110 PYQ 112 (294)
T ss_pred Ccc
Confidence 994
No 100
>PTZ00146 fibrillarin; Provisional
Probab=98.75 E-value=1.2e-07 Score=95.42 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=94.6
Q ss_pred CcccHHHHHHHHHHhcCCCceEEEEccccccccccceeeeccceeeecccccceEEeecCccchhHHHHhccC---CEEE
Q 045638 213 HQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEGDAYMCESLFFVQMTGDVFAGVGPISIPAAKIV---KRVY 289 (437)
Q Consensus 213 ~~p~k~~I~evLl~k~~P~iktVv~K~~~I~gefR~~~levLaGv~E~~FF~e~VLDlFAGvG~FaI~aAkkg---~~V~ 289 (437)
|.||+..+|.+|+.- ++.+..+- +++|||++||+|.++.++|... ..||
T Consensus 110 w~p~rSKlaa~i~~g----~~~l~Ikp------------------------G~~VLDLGaG~G~~t~~lAdiVG~~G~Vy 161 (293)
T PTZ00146 110 WNPFRSKLAAAIIGG----VANIPIKP------------------------GSKVLYLGAASGTTVSHVSDLVGPEGVVY 161 (293)
T ss_pred eCCcccHHHHHHHCC----cceeccCC------------------------CCEEEEeCCcCCHHHHHHHHHhCCCCEEE
Confidence 678999999988853 33332121 1579999999999999999963 3899
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCc--ChHHHHHHHHHHhcCCCCCCC
Q 045638 290 ANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN--DATEFLDAFRGIYRDRPEDVK 367 (437)
Q Consensus 290 A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~--~a~eFLdaa~~llk~~~~~~~ 367 (437)
|+|++|++.+.|..-++.. .||.++.+|++.-..... ....+|+|++|... .+..++.++.++|+++
T Consensus 162 AVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~---~~~~vDvV~~Dva~pdq~~il~~na~r~LKpG----- 230 (293)
T PTZ00146 162 AVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRM---LVPMVDVIFADVAQPDQARIVALNAQYFLKNG----- 230 (293)
T ss_pred EEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhc---ccCCCCEEEEeCCCcchHHHHHHHHHHhccCC-----
Confidence 9999999987777655432 378999999875321100 13469999998643 3446677888899987
Q ss_pred CCccEEEEEeccC-CCCCcccHHHHHHHHH
Q 045638 368 FTFPKTHVYGFSK-ARDPEFDFHERIRIAL 396 (437)
Q Consensus 368 ~~~p~IHvY~F~k-~~d~~~d~~eRI~~~L 396 (437)
+.+-+ .+.+ ..+...+..+++++++
T Consensus 231 ---G~~vI-~ika~~id~g~~pe~~f~~ev 256 (293)
T PTZ00146 231 ---GHFII-SIKANCIDSTAKPEVVFASEV 256 (293)
T ss_pred ---CEEEE-EEeccccccCCCHHHHHHHHH
Confidence 45555 3433 2232234555555443
No 101
>PRK10742 putative methyltransferase; Provisional
Probab=98.74 E-value=3.6e-08 Score=96.89 Aligned_cols=77 Identities=16% Similarity=0.170 Sum_probs=68.4
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHc-------C-CCCcEEEEEccHHHHHHHHHHhhcCCc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLN-------K-LEKKIEVFNMDGRRFIDAMFASQKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklN-------k-v~~~V~vi~gDa~~~l~~~~~~~~~~~ 336 (437)
.+|||+|||.|.-|+.+|.+||.|+++|.||.+...+++|++.- . +..+++++++|+.+++... ...
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~-----~~~ 164 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----TPR 164 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC-----CCC
Confidence 37999999999999999999999999999999999999999973 2 3247999999999998752 346
Q ss_pred ccEEEEcCCc
Q 045638 337 ITQVVMNLPN 346 (437)
Q Consensus 337 fD~VImnpP~ 346 (437)
||.|.+|||+
T Consensus 165 fDVVYlDPMf 174 (250)
T PRK10742 165 PQVVYLDPMF 174 (250)
T ss_pred CcEEEECCCC
Confidence 9999999998
No 102
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.72 E-value=7.8e-08 Score=95.58 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=76.9
Q ss_pred cceEEeecCccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+++|||+|||.|.+++.+|++ |++|+++.++++.++++++.++..++.+++++.++|.+++- .+||+|+.
T Consensus 63 G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---------~~fD~IvS 133 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---------GKFDRIVS 133 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------S-SEEEE
T ss_pred CCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---------CCCCEEEE
Confidence 378999999999999999998 99999999999999999999999999999999999998763 37999875
Q ss_pred cC------CcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 343 NL------PNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 343 np------P~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
== +..-..|+..+.++++++ |.+-++.++.
T Consensus 134 i~~~Ehvg~~~~~~~f~~~~~~Lkpg--------G~~~lq~i~~ 169 (273)
T PF02353_consen 134 IEMFEHVGRKNYPAFFRKISRLLKPG--------GRLVLQTITH 169 (273)
T ss_dssp ESEGGGTCGGGHHHHHHHHHHHSETT--------EEEEEEEEEE
T ss_pred EechhhcChhHHHHHHHHHHHhcCCC--------cEEEEEeccc
Confidence 31 223468999999999997 5665555553
No 103
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.72 E-value=5.3e-08 Score=92.70 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=72.3
Q ss_pred ceEEeecCccchhHHHHhcc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|||+|||+|+++..+|+. + ++|+++|++|++++.+++|++.+++. +++++++|+..... ....||.|+
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~------~~~~fD~I~ 150 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYE------ENAPYDRIY 150 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCC------cCCCcCEEE
Confidence 68999999999999988875 2 59999999999999999999999986 79999999876432 135799999
Q ss_pred EcCCcChHHHHHHHHHHhcCC
Q 045638 342 MNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~ 362 (437)
++-- ..+....+.+.++++
T Consensus 151 ~~~~--~~~~~~~l~~~Lkpg 169 (212)
T PRK13942 151 VTAA--GPDIPKPLIEQLKDG 169 (212)
T ss_pred ECCC--cccchHHHHHhhCCC
Confidence 8742 233445667778876
No 104
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.72 E-value=8.1e-08 Score=94.31 Aligned_cols=104 Identities=14% Similarity=0.204 Sum_probs=82.5
Q ss_pred ceEEeecCccchhHHHHhcc-C--CEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEEccHHHHHHHHHHhhcCCcccE
Q 045638 265 QMTGDVFAGVGPISIPAAKI-V--KRVYANDLNPYAVDYLERNSVL--NKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g--~~V~A~DlNP~Ave~L~~Nakl--Nkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
++|||++||+|.+++.++++ + ++|+|+|++|++++.+++++.. ++...+++++++|+.++. + +..+||.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp---~---~~~sfD~ 148 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP---F---DDCYFDA 148 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC---C---CCCCEeE
Confidence 68999999999999999875 3 4899999999999999887642 222347999999997652 1 2467999
Q ss_pred EEEcCC----cChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 045638 340 VVMNLP----NDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKAR 382 (437)
Q Consensus 340 VImnpP----~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~ 382 (437)
|+++.- .....++.++.++++++ |.+.+-+|.+.+
T Consensus 149 V~~~~~l~~~~d~~~~l~ei~rvLkpG--------G~l~i~d~~~~~ 187 (261)
T PLN02233 149 ITMGYGLRNVVDRLKAMQEMYRVLKPG--------SRVSILDFNKST 187 (261)
T ss_pred EEEecccccCCCHHHHHHHHHHHcCcC--------cEEEEEECCCCC
Confidence 988642 13578899999999997 688888888754
No 105
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.70 E-value=1.8e-07 Score=91.42 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=83.1
Q ss_pred ceEEeecCccchhHHHHhcc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|||+|||+|..++.+++. + .+|+++|++|.+++.+++|+..+++. +++++.+|+.+.. + +...||.|+
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~---~---~~~~fD~Vi 151 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALP---V---ADNSVDVII 151 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCC---C---CCCceeEEE
Confidence 68999999999998877764 3 37999999999999999999999886 7999999986532 1 245799999
Q ss_pred EcC----CcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 045638 342 MNL----PNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKA 381 (437)
Q Consensus 342 mnp----P~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~ 381 (437)
.|. +......+..+.++++++ |++.+.++...
T Consensus 152 ~~~v~~~~~d~~~~l~~~~r~LkpG--------G~l~i~~~~~~ 187 (272)
T PRK11873 152 SNCVINLSPDKERVFKEAFRVLKPG--------GRFAISDVVLR 187 (272)
T ss_pred EcCcccCCCCHHHHHHHHHHHcCCC--------cEEEEEEeecc
Confidence 875 234567899999999987 68888877643
No 106
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=2e-08 Score=91.79 Aligned_cols=89 Identities=22% Similarity=0.253 Sum_probs=75.8
Q ss_pred cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+..++|++||.|-+++..+--+. .|+++||+|+|++...+|++.-.+. +.+.++|..+... ..+.||.+|+
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~------~~g~fDtavi 120 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLEL------KGGIFDTAVI 120 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhc------cCCeEeeEEe
Confidence 37899999999999988887665 8999999999999999999988774 6889999887653 2578999999
Q ss_pred cCCcCh------HHHHHHHHHHhc
Q 045638 343 NLPNDA------TEFLDAFRGIYR 360 (437)
Q Consensus 343 npP~~a------~eFLdaa~~llk 360 (437)
|||... .+|+++++.+.+
T Consensus 121 NppFGTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 121 NPPFGTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred cCCCCcccccccHHHHHHHHHHHH
Confidence 999854 489999888765
No 107
>PRK00811 spermidine synthase; Provisional
Probab=98.70 E-value=5.6e-07 Score=89.59 Aligned_cols=93 Identities=11% Similarity=0.171 Sum_probs=76.7
Q ss_pred ceEEeecCccchhHHHHhcc-C-CEEEEEeCCHHHHHHHHHHHHHcC--C--CCcEEEEEccHHHHHHHHHHhhcCCccc
Q 045638 265 QMTGDVFAGVGPISIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNK--L--EKKIEVFNMDGRRFIDAMFASQKAHKIT 338 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g-~~V~A~DlNP~Ave~L~~NaklNk--v--~~~V~vi~gDa~~~l~~~~~~~~~~~fD 338 (437)
+.|||+|||.|.++..+++. + .+|+++|++|..++.++++....+ . +.+++++.+|+++++.. ...+||
T Consensus 78 ~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-----~~~~yD 152 (283)
T PRK00811 78 KRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-----TENSFD 152 (283)
T ss_pred CEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-----CCCccc
Confidence 68999999999999999987 4 489999999999999999886422 2 34899999999999864 246799
Q ss_pred EEEEcCCc--------ChHHHHHHHHHHhcCC
Q 045638 339 QVVMNLPN--------DATEFLDAFRGIYRDR 362 (437)
Q Consensus 339 ~VImnpP~--------~a~eFLdaa~~llk~~ 362 (437)
.|++|++. ...+|+..+.+.|+++
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g 184 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKED 184 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 99999632 1368888889999886
No 108
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.70 E-value=1.2e-07 Score=89.80 Aligned_cols=88 Identities=19% Similarity=0.098 Sum_probs=70.0
Q ss_pred cceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
+.+|||+|||+|.++..+++.+..|+|+|++|.+++.+++++..++..+++++.++|+.+.. .+||.|++.
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---------~~fD~ii~~ 126 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---------GEFDIVVCM 126 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---------CCcCEEEEh
Confidence 37899999999999999999888999999999999999999998888668999999987642 469988864
Q ss_pred C------CcChHHHHHHHHHHhc
Q 045638 344 L------PNDATEFLDAFRGIYR 360 (437)
Q Consensus 344 p------P~~a~eFLdaa~~llk 360 (437)
- +......+..+.++++
T Consensus 127 ~~l~~~~~~~~~~~l~~i~~~~~ 149 (219)
T TIGR02021 127 DVLIHYPASDMAKALGHLASLTK 149 (219)
T ss_pred hHHHhCCHHHHHHHHHHHHHHhC
Confidence 2 1222344555555544
No 109
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.69 E-value=3.4e-08 Score=96.70 Aligned_cols=73 Identities=25% Similarity=0.392 Sum_probs=63.5
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
+.|+|+|||+|.+++.+++++.+|+|+|+++.+++.++++++. . ++++++++|+.++. ...+|.|++||
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~~--------~~~~d~Vv~Nl 99 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKVD--------LPEFNKVVSNL 99 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccCC--------chhceEEEEcC
Confidence 6899999999999999999988999999999999999998854 2 37999999998752 12479999999
Q ss_pred CcCh
Q 045638 345 PNDA 348 (437)
Q Consensus 345 P~~a 348 (437)
|+..
T Consensus 100 Py~i 103 (258)
T PRK14896 100 PYQI 103 (258)
T ss_pred Cccc
Confidence 9953
No 110
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.69 E-value=9.1e-08 Score=90.25 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=73.3
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
.+|||+|||+|+++..+++.+.+|+++|++|.+++.+++|++.+++. ++++.++|+.+.+. ....||.|+++.
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~fD~I~~~~ 152 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWP------AYAPFDRILVTA 152 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCC------cCCCcCEEEEcc
Confidence 57999999999999988887679999999999999999999999987 69999999865322 135799999997
Q ss_pred CcChHHHHHHHHHHhcCC
Q 045638 345 PNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 345 P~~a~eFLdaa~~llk~~ 362 (437)
+. ....+.+...++++
T Consensus 153 ~~--~~~~~~l~~~L~~g 168 (212)
T PRK00312 153 AA--PEIPRALLEQLKEG 168 (212)
T ss_pred Cc--hhhhHHHHHhcCCC
Confidence 54 23356667778776
No 111
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.67 E-value=3.5e-08 Score=98.02 Aligned_cols=170 Identities=21% Similarity=0.216 Sum_probs=111.1
Q ss_pred cccceeecccccccCCcceEEEEEeeccccCCCCHHHHHHccCCCCC-CCCceeEEECcEEEEEeCCCCcccHHHHHHHH
Q 045638 146 TVGKVYHWSHLYGRGTECFQLEVCNVDEAFDFHSYVQILEALLPKGM-IIPSAFETVGHIAHLNLREEHQPFKYLIAKVV 224 (437)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~elv~~~l~l~Y~~~~~~eIL~~iLP~~~-~ipssfd~iGdIa~lnl~~e~~p~k~~I~evL 224 (437)
-.+..+.|-..+..... .-...+++.|-+.+||.+. .++.|++. --...+| .+.|-...
T Consensus 35 al~~~~~W~~~l~~~~~-----------e~~k~~~~~i~shvL~~Kf~si~ds~~~-~pl~~~q--------l~~i~~~~ 94 (328)
T KOG2904|consen 35 ALELLLPWTRTLEQAGE-----------ESSKLSYKWIVSHVLPDKFWSIEDSIVD-DPLVILQ--------LESIRWAC 94 (328)
T ss_pred hhHhhchHHHHHHHhcC-----------chhhhhhHHHHHhhhhhhhccccchhhc-cccchhH--------HHHHHHHH
Confidence 45666677666653110 1123567788888998876 47777754 1111222 23344444
Q ss_pred HHhcC--CCceEEEEccccccccccceeeecccee----eec-cc-------------c-cceEEeecCccchhHHHHhc
Q 045638 225 LDKNK--PKIQTVVNKIDAIHNDYRTMQLEGDAYM----CES-LF-------------F-VQMTGDVFAGVGPISIPAAK 283 (437)
Q Consensus 225 l~k~~--P~iktVv~K~~~I~gefR~~~levLaGv----~E~-~F-------------F-~e~VLDlFAGvG~FaI~aAk 283 (437)
....+ | ++-|+. +..|+...+..-.|| -|. .| + ...+||+|||+|.+|+.++.
T Consensus 95 ~~R~~r~P-lQYIlg-----~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~ 168 (328)
T KOG2904|consen 95 LQRYKRMP-LQYILG-----SQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLH 168 (328)
T ss_pred HHHHhcCC-hhheec-----cCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHh
Confidence 33321 2 344442 345666666666662 122 11 2 37899999999999999988
Q ss_pred c--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc----HHHHHHHHHHhhcCCcccEEEEcCCc
Q 045638 284 I--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMD----GRRFIDAMFASQKAHKITQVVMNLPN 346 (437)
Q Consensus 284 k--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gD----a~~~l~~~~~~~~~~~fD~VImnpP~ 346 (437)
. .++|+|+|.++.|+..+.+|++.+++.+++.+++-+ +.+-.. . ..++.|.++.|||+
T Consensus 169 ~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-l----~~~~~dllvsNPPY 232 (328)
T KOG2904|consen 169 GLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHP-L----LEGKIDLLVSNPPY 232 (328)
T ss_pred cCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccc-c----ccCceeEEecCCCc
Confidence 4 469999999999999999999999999999999653 332211 1 24789999999998
No 112
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.66 E-value=1.6e-07 Score=91.84 Aligned_cols=104 Identities=18% Similarity=0.240 Sum_probs=88.6
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
..|||++||||-+++.+++.. ++|+++|+|+.+++.+++-++.-++.+ ++++.+||.+.. + ++.+||.|.+
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LP---f---~D~sFD~vt~ 125 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLP---F---PDNSFDAVTI 125 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCC---C---CCCccCEEEe
Confidence 689999999999999999974 599999999999999999998777764 999999999864 2 4688999988
Q ss_pred cCCc----ChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 045638 343 NLPN----DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARD 383 (437)
Q Consensus 343 npP~----~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d 383 (437)
..=- .-...|.++.|+++++ |.+-|-+|++...
T Consensus 126 ~fglrnv~d~~~aL~E~~RVlKpg--------G~~~vle~~~p~~ 162 (238)
T COG2226 126 SFGLRNVTDIDKALKEMYRVLKPG--------GRLLVLEFSKPDN 162 (238)
T ss_pred eehhhcCCCHHHHHHHHHHhhcCC--------eEEEEEEcCCCCc
Confidence 6421 4578899999999997 6889999987554
No 113
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.65 E-value=2.2e-07 Score=89.13 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=80.2
Q ss_pred ceEEeecCccchhHHHHhcc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk----g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V 340 (437)
.+|||+|||+|.+++.++++ +++|+++|++|.+++.++++++..+...+++++++|+.++. ...+|.|
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~d~v 126 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--------IKNASMV 126 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--------CCCCCEE
Confidence 57999999999999999874 56999999999999999999987766557999999998753 2347888
Q ss_pred EEcCCc------ChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 341 VMNLPN------DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 341 ImnpP~------~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
+++..- ....++..+.+.++++ |.+-+.+...
T Consensus 127 ~~~~~l~~~~~~~~~~~l~~i~~~Lkpg--------G~l~i~d~~~ 164 (239)
T TIGR00740 127 ILNFTLQFLPPEDRIALLTKIYEGLNPN--------GVLVLSEKFR 164 (239)
T ss_pred eeecchhhCCHHHHHHHHHHHHHhcCCC--------eEEEEeeccc
Confidence 876431 2357889999999987 6777776543
No 114
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.64 E-value=1.1e-07 Score=91.25 Aligned_cols=100 Identities=17% Similarity=0.112 Sum_probs=75.4
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEEEEccHHHHHHHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL--------------EKKIEVFNMDGRRFIDAMFA 330 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv--------------~~~V~vi~gDa~~~l~~~~~ 330 (437)
.+|||++||.|.-++.+|.+|..|+|+|++|.|++.+.. .|++ ..+|+++++|..++-...
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-- 110 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD-- 110 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCccc--
Confidence 589999999999999999999999999999999998633 2222 136899999998763211
Q ss_pred hhcCCcccEEE-----EcCCcC-hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 331 SQKAHKITQVV-----MNLPND-ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 331 ~~~~~~fD~VI-----mnpP~~-a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
...||.|+ +-+|.. -..++..+.++++++ |++++.+|..
T Consensus 111 ---~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg--------G~~ll~~~~~ 155 (213)
T TIGR03840 111 ---LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG--------ARQLLITLDY 155 (213)
T ss_pred ---CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC--------CeEEEEEEEc
Confidence 12355433 444543 357899999999997 6888888865
No 115
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.64 E-value=6.9e-08 Score=98.70 Aligned_cols=91 Identities=20% Similarity=0.294 Sum_probs=78.5
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM-DGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~g-Da~~~l~~~~~~~~~~~fD~VImn 343 (437)
+.|+|.|||||.|.|.|.-.|++|+++|++-.+++-++.|.+.-++++ ..+..+ ||.... + +..++|-|+.|
T Consensus 199 ~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lp---l---~~~~vdaIatD 271 (347)
T COG1041 199 ELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLP---L---RDNSVDAIATD 271 (347)
T ss_pred CEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCC---C---CCCccceEEec
Confidence 799999999999999999999999999999999999999999999884 666666 998763 2 23469999999
Q ss_pred CCcC-------------hHHHHHHHHHHhcCC
Q 045638 344 LPND-------------ATEFLDAFRGIYRDR 362 (437)
Q Consensus 344 pP~~-------------a~eFLdaa~~llk~~ 362 (437)
||+. -.++++.+...++++
T Consensus 272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~g 303 (347)
T COG1041 272 PPYGRSTKIKGEGLDELYEEALESASEVLKPG 303 (347)
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHhhcC
Confidence 9983 137888899999886
No 116
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.62 E-value=3.5e-08 Score=93.63 Aligned_cols=75 Identities=25% Similarity=0.234 Sum_probs=66.6
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
+++.|+|||+|++|+.||++..+|+|+|.||.-..++.+|++.||.. |++++++||+++-- ...|.|++-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~f--------e~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYDF--------ENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEecccccccc--------cccceeHHHH
Confidence 88999999999999999999779999999999999999999999987 89999999998631 2468888877
Q ss_pred CcCh
Q 045638 345 PNDA 348 (437)
Q Consensus 345 P~~a 348 (437)
-.++
T Consensus 105 lDTa 108 (252)
T COG4076 105 LDTA 108 (252)
T ss_pred hhHH
Confidence 6654
No 117
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.62 E-value=2e-07 Score=88.24 Aligned_cols=101 Identities=16% Similarity=0.245 Sum_probs=84.7
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
..++|+|||.|-|.+.+|+. ...++|+|+.+..+..+...+...+++ |+.++++||..++..++ ++.++|.|.+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~---~~~~v~~i~i 94 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLF---PPGSVDRIYI 94 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHS---TTTSEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcc---cCCchheEEE
Confidence 68999999999999999985 469999999999999999999999998 89999999999988776 3578999999
Q ss_pred cCCc------------ChHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 045638 343 NLPN------------DATEFLDAFRGIYRDRPEDVKFTFPKTHVYG 377 (437)
Q Consensus 343 npP~------------~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~ 377 (437)
+.|. ...+|++.+.++|+++ |.||+-+
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~g--------G~l~~~T 133 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPG--------GELYFAT 133 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEE--------EEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCC--------CEEEEEe
Confidence 9885 3469999999999987 6776643
No 118
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.61 E-value=1.3e-07 Score=91.01 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=70.2
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEEEEccHHHHHHHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL--------------EKKIEVFNMDGRRFIDAMFA 330 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv--------------~~~V~vi~gDa~~~l~~~~~ 330 (437)
.+|||++||.|.-++.+|.+|+.|+|+|++|.|++.+. +.|++ ..+|+++++|+.++....
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~---~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~-- 113 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF---AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD-- 113 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH---HHcCCCccccccccccccccCceEEEECcccCCCccc--
Confidence 68999999999999999999999999999999999863 23333 246899999998864221
Q ss_pred hhcCCcccEEE-----EcCCc-ChHHHHHHHHHHhcCC
Q 045638 331 SQKAHKITQVV-----MNLPN-DATEFLDAFRGIYRDR 362 (437)
Q Consensus 331 ~~~~~~fD~VI-----mnpP~-~a~eFLdaa~~llk~~ 362 (437)
...||.|+ +-+|. .-..++..+.++++++
T Consensus 114 ---~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 114 ---LADVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred ---CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 23577665 44444 3468899999999987
No 119
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.61 E-value=9.2e-08 Score=79.75 Aligned_cols=88 Identities=19% Similarity=0.213 Sum_probs=68.0
Q ss_pred EEeecCccchhHHHHhcc---C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 267 TGDVFAGVGPISIPAAKI---V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 267 VLDlFAGvG~FaI~aAkk---g--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
|||++||+|..+..+++. + .+++++|+||.+++.++++.+..+. +++++++|+.++.. ...+||.|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~------~~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF------SDGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH------HSSSEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc------cCCCeeEEE
Confidence 799999999999999876 3 6999999999999999999988777 58999999988532 256899999
Q ss_pred E-cC--CcC----hHHHHHHHHHHhcCC
Q 045638 342 M-NL--PND----ATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 m-np--P~~----a~eFLdaa~~llk~~ 362 (437)
+ .. .+. ...++..+.++++++
T Consensus 73 ~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 73 CSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp E-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred EcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 9 44 232 356777777777653
No 120
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.60 E-value=1.6e-07 Score=90.63 Aligned_cols=97 Identities=14% Similarity=0.034 Sum_probs=78.0
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
..|||+|||+|.++..+++.++.|+++|+||.+++.++++.. ...++++|+.+.. + +..+||.|+.+.
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~---~---~~~~fD~V~s~~ 111 (251)
T PRK10258 44 THVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLP---L---ATATFDLAWSNL 111 (251)
T ss_pred CeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCc---C---CCCcEEEEEECc
Confidence 479999999999999999888999999999999999887642 2456888887642 1 245799999997
Q ss_pred Cc----ChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 045638 345 PN----DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKA 381 (437)
Q Consensus 345 P~----~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~ 381 (437)
+. ....++..+.++++++ |.+.+-+|...
T Consensus 112 ~l~~~~d~~~~l~~~~~~Lk~g--------G~l~~~~~~~~ 144 (251)
T PRK10258 112 AVQWCGNLSTALRELYRVVRPG--------GVVAFTTLVQG 144 (251)
T ss_pred hhhhcCCHHHHHHHHHHHcCCC--------eEEEEEeCCCC
Confidence 64 3468899999999987 68888777654
No 121
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.60 E-value=7.7e-08 Score=101.82 Aligned_cols=91 Identities=31% Similarity=0.318 Sum_probs=72.0
Q ss_pred ceEEeecCccchhHHHHhccC------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCccc
Q 045638 265 QMTGDVFAGVGPISIPAAKIV------KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 338 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg------~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD 338 (437)
.+|+|+|||.|+++..+++.+ .+|||+|.||.|+..+++-++.|++.++|+++++|.+++-. +.++|
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekvD 260 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKVD 260 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-EE
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCcee
Confidence 579999999999988776653 39999999999999999988999998899999999999742 46899
Q ss_pred EEEEcCCc------ChHHHHHHHHHHhcCC
Q 045638 339 QVVMNLPN------DATEFLDAFRGIYRDR 362 (437)
Q Consensus 339 ~VImnpP~------~a~eFLdaa~~llk~~ 362 (437)
.||.-+-. ...+-|+++.+.++++
T Consensus 261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~ 290 (448)
T PF05185_consen 261 IIVSELLGSFGDNELSPECLDAADRFLKPD 290 (448)
T ss_dssp EEEE---BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred EEEEeccCCccccccCHHHHHHHHhhcCCC
Confidence 99977654 3567888888888875
No 122
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.60 E-value=2.8e-07 Score=87.02 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=81.4
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+.|||++||.|.+++.+|+. +++|+++|++|.+++.++++++.+++.++++++++|..+.. ...+||.|+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-------~~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-------FPDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-------CCCCCCEeeh
Confidence 47999999999999999986 36999999999999999999999999889999999985432 1247999986
Q ss_pred cC----CcChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 343 NL----PNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 343 np----P~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
.- ......++..+.++++++ |.+-+.++.
T Consensus 74 ~~~l~~~~~~~~~l~~~~~~Lkpg--------G~l~i~~~~ 106 (224)
T smart00828 74 FEVIHHIKDKMDLFSNISRHLKDG--------GHLVLADFI 106 (224)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCCC--------CEEEEEEcc
Confidence 42 123468899999999987 576666654
No 123
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.60 E-value=2.7e-07 Score=93.89 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=71.4
Q ss_pred ceEEeecCccchhHHHHhccC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg---~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|||+|||+|.+++.+|+.. ..|+++|++|.+++.+++|++.++++ ++.++++|+.+.+.. ...||.|+
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~------~~~fD~Ii 154 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPE------FAPYDVIF 154 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccc------cCCccEEE
Confidence 579999999999999999853 37999999999999999999999986 799999998775432 24699999
Q ss_pred EcCCcChHHHHHHHHHHhcCC
Q 045638 342 MNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~ 362 (437)
++.. .....+.+.+.++++
T Consensus 155 ~~~g--~~~ip~~~~~~Lkpg 173 (322)
T PRK13943 155 VTVG--VDEVPETWFTQLKEG 173 (322)
T ss_pred ECCc--hHHhHHHHHHhcCCC
Confidence 9733 233344566677765
No 124
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.59 E-value=6.6e-07 Score=84.18 Aligned_cols=101 Identities=18% Similarity=0.100 Sum_probs=82.3
Q ss_pred cceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
+.+|+|+|||+|.++..+++.++.|+++|+||.+++.+++|+..+++. ++.+.++|+.++... ...+||.|+++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~-----~~~~~D~i~~~ 119 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEK-----GAKSFDVVTCM 119 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcC-----CCCCccEEEeh
Confidence 478999999999999999998889999999999999999999988875 588999998877532 13579999887
Q ss_pred CC----cChHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 045638 344 LP----NDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGF 378 (437)
Q Consensus 344 pP----~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F 378 (437)
-. .....++..+.++++++ |.+.+..+
T Consensus 120 ~~l~~~~~~~~~l~~~~~~L~~g--------G~l~i~~~ 150 (224)
T TIGR01983 120 EVLEHVPDPQAFIRACAQLLKPG--------GILFFSTI 150 (224)
T ss_pred hHHHhCCCHHHHHHHHHHhcCCC--------cEEEEEec
Confidence 32 24467889999999886 56666554
No 125
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.58 E-value=1.3e-07 Score=93.31 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=65.0
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
+.|+|+|||+|.++..+++++.+|+|+|++|.+++.+++|+.. ++++++++|+.++... ....|.||.||
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~------~~~~~~vv~Nl 113 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS------ELQPLKVVANL 113 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH------HcCcceEEEeC
Confidence 6899999999999999999988999999999999999988742 4799999999876311 11158999999
Q ss_pred CcCh-HHHHHHH
Q 045638 345 PNDA-TEFLDAF 355 (437)
Q Consensus 345 P~~a-~eFLdaa 355 (437)
|+.. ...+..+
T Consensus 114 PY~iss~ii~~~ 125 (272)
T PRK00274 114 PYNITTPLLFHL 125 (272)
T ss_pred CccchHHHHHHH
Confidence 9854 3444443
No 126
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.57 E-value=6.4e-08 Score=77.44 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=67.3
Q ss_pred EeecCccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCc
Q 045638 268 GDVFAGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN 346 (437)
Q Consensus 268 LDlFAGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~ 346 (437)
||++||.|.++..++++ +..|+++|+++.+++.++++.+.++ +.+.++|+.++. + +..+||.|+++--.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~---~---~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLP---F---PDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSS---S----TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCc---c---ccccccccccccce
Confidence 79999999999999999 7799999999999999998876544 458999988762 1 25789999887432
Q ss_pred ----ChHHHHHHHHHHhcCC
Q 045638 347 ----DATEFLDAFRGIYRDR 362 (437)
Q Consensus 347 ----~a~eFLdaa~~llk~~ 362 (437)
....++.++.++++++
T Consensus 71 ~~~~~~~~~l~e~~rvLk~g 90 (95)
T PF08241_consen 71 HHLEDPEAALREIYRVLKPG 90 (95)
T ss_dssp GGSSHHHHHHHHHHHHEEEE
T ss_pred eeccCHHHHHHHHHHHcCcC
Confidence 3468899999999986
No 127
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.55 E-value=4e-07 Score=88.33 Aligned_cols=83 Identities=17% Similarity=0.097 Sum_probs=68.6
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|||+|||+|.++..++++ +++|+++|++|.+++.++++ +++++++|+.++. ...+||.|++
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-------~~~~fD~v~~ 95 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-------PKPDTDVVVS 95 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-------CCCCceEEEE
Confidence 68999999999999999987 57999999999999988652 3678899987652 1357999999
Q ss_pred cCCc----ChHHHHHHHHHHhcCC
Q 045638 343 NLPN----DATEFLDAFRGIYRDR 362 (437)
Q Consensus 343 npP~----~a~eFLdaa~~llk~~ 362 (437)
+... ....++..+.+.++++
T Consensus 96 ~~~l~~~~d~~~~l~~~~~~Lkpg 119 (255)
T PRK14103 96 NAALQWVPEHADLLVRWVDELAPG 119 (255)
T ss_pred ehhhhhCCCHHHHHHHHHHhCCCC
Confidence 8753 3467888888999986
No 128
>PRK03612 spermidine synthase; Provisional
Probab=98.54 E-value=1.3e-06 Score=94.05 Aligned_cols=93 Identities=19% Similarity=0.289 Sum_probs=77.0
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcC-----CC-CcEEEEEccHHHHHHHHHHhhcCCc
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNK-----LE-KKIEVFNMDGRRFIDAMFASQKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNk-----v~-~~V~vi~gDa~~~l~~~~~~~~~~~ 336 (437)
++|||+|||.|..+..+++.+ .+|+++|+||+.++.+++|...+. ++ ++++++++|+++++... ..+
T Consensus 299 ~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-----~~~ 373 (521)
T PRK03612 299 RRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-----AEK 373 (521)
T ss_pred CeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-----CCC
Confidence 789999999999999998874 599999999999999999754322 32 47999999999988642 457
Q ss_pred ccEEEEcCCcC---------hHHHHHHHHHHhcCC
Q 045638 337 ITQVVMNLPND---------ATEFLDAFRGIYRDR 362 (437)
Q Consensus 337 fD~VImnpP~~---------a~eFLdaa~~llk~~ 362 (437)
||.|++|+|.. +.+|++.+.+.++++
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg 408 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPD 408 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCC
Confidence 99999998852 247899999999986
No 129
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.52 E-value=4.8e-07 Score=87.44 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=70.5
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|||+|||+|.++..+++. +++|+++|++|.+++.++++. . ++.++.+|+.++. ...+||.|++
T Consensus 33 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~-~~~~~~~d~~~~~-------~~~~fD~v~~ 99 (258)
T PRK01683 33 RYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----P-DCQFVEADIASWQ-------PPQALDLIFA 99 (258)
T ss_pred CEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----C-CCeEEECchhccC-------CCCCccEEEE
Confidence 68999999999999999986 569999999999999998764 2 5789999987653 1357999999
Q ss_pred cCCc----ChHHHHHHHHHHhcCC
Q 045638 343 NLPN----DATEFLDAFRGIYRDR 362 (437)
Q Consensus 343 npP~----~a~eFLdaa~~llk~~ 362 (437)
+... ....++..+.++++++
T Consensus 100 ~~~l~~~~d~~~~l~~~~~~Lkpg 123 (258)
T PRK01683 100 NASLQWLPDHLELFPRLVSLLAPG 123 (258)
T ss_pred ccChhhCCCHHHHHHHHHHhcCCC
Confidence 9664 3457888999999986
No 130
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.51 E-value=7.3e-07 Score=83.76 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=82.1
Q ss_pred ceEEeecCccchhHHHHhccC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg---~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
.+|+|+|||.|.+++.+++.+ .+|+++|++|.+++.+++|+..+++..++.++.+|+.+... ....||.|+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~D~I~ 126 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSFDAVT 126 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCccEEE
Confidence 689999999999999999875 69999999999999999999887776689999999876431 245799988
Q ss_pred EcCC----cChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 342 MNLP----NDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 342 mnpP----~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
++.- .....++..+.++++++ |.+-+.++..
T Consensus 127 ~~~~l~~~~~~~~~l~~~~~~L~~g--------G~li~~~~~~ 161 (239)
T PRK00216 127 IAFGLRNVPDIDKALREMYRVLKPG--------GRLVILEFSK 161 (239)
T ss_pred EecccccCCCHHHHHHHHHHhccCC--------cEEEEEEecC
Confidence 7532 23568899999999886 5666666543
No 131
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.51 E-value=6.1e-07 Score=85.53 Aligned_cols=97 Identities=23% Similarity=0.225 Sum_probs=70.4
Q ss_pred ceEEeecCccchhHHHHhccC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHhhcCCcccE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg---~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~~~~~~fD~ 339 (437)
.+|||+|||+|.++..++++. +.|+|+|++| .+.+. +++++++|+.+. +..+...-....+|.
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----------~~~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----------MDPIV-GVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----------ccCCC-CcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 789999999999999998863 4899999999 13444 589999998874 222221112467999
Q ss_pred EEEcC-CcC--------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 045638 340 VVMNL-PND--------------ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKA 381 (437)
Q Consensus 340 VImnp-P~~--------------a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~ 381 (437)
|++|+ |.. ....|..+.++++++ |.+-+-.|...
T Consensus 121 V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG--------G~~vi~~~~~~ 169 (209)
T PRK11188 121 VMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG--------GSFVVKVFQGE 169 (209)
T ss_pred EecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC--------CEEEEEEecCc
Confidence 99986 321 135678888899887 67766666653
No 132
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.50 E-value=9.1e-07 Score=93.23 Aligned_cols=101 Identities=14% Similarity=0.125 Sum_probs=80.6
Q ss_pred ceEEeecCccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.+|||+|||+|.+++.+|+. +++|+|+|++|.+++.+++|+. +...+++++++|+.+.. + +..+||.|++.
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~---~---~~~~fD~I~s~ 339 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT---Y---PDNSFDVIYSR 339 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC---C---CCCCEEEEEEC
Confidence 68999999999999999885 6799999999999999999886 34447999999987642 1 24579999986
Q ss_pred CCc----ChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 045638 344 LPN----DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKA 381 (437)
Q Consensus 344 pP~----~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~ 381 (437)
-.. ....++..+.++++++ |.+-+.++...
T Consensus 340 ~~l~h~~d~~~~l~~~~r~Lkpg--------G~l~i~~~~~~ 373 (475)
T PLN02336 340 DTILHIQDKPALFRSFFKWLKPG--------GKVLISDYCRS 373 (475)
T ss_pred CcccccCCHHHHHHHHHHHcCCC--------eEEEEEEeccC
Confidence 322 3568899999999987 67766666553
No 133
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.50 E-value=5.7e-06 Score=81.63 Aligned_cols=93 Identities=10% Similarity=0.176 Sum_probs=76.8
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHc-C-C-CCcEEEEEccHHHHHHHHHHhhcCCcccE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLN-K-L-EKKIEVFNMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklN-k-v-~~~V~vi~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
..||++|||.|.++..+++.. .+|+++|++|.+++.++++.... + + ..+++++.+|+++++... ..+||.
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-----~~~yDv 148 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-----ENTFDV 148 (270)
T ss_pred CEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-----CCCccE
Confidence 579999999999999888874 48999999999999999987543 2 2 237899999999998642 467999
Q ss_pred EEEcCCcC--------hHHHHHHHHHHhcCC
Q 045638 340 VVMNLPND--------ATEFLDAFRGIYRDR 362 (437)
Q Consensus 340 VImnpP~~--------a~eFLdaa~~llk~~ 362 (437)
||+|++.. ..+|+..+.+.++++
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pg 179 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNED 179 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCC
Confidence 99998731 468899999999987
No 134
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=8.5e-07 Score=87.35 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=87.6
Q ss_pred ccceEEeecCccchhHHHHhcc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccE
Q 045638 263 FVQMTGDVFAGVGPISIPAAKI--V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 263 F~e~VLDlFAGvG~FaI~aAkk--g-~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
-+.+|+|+|.|+|.++..+|.. + .+|+..|+.++.++.+++|++.-++.++++...+|+.+.+. ...||.
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~vDa 166 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDVDA 166 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------ccccCE
Confidence 3589999999999999999973 2 49999999999999999999999999889999999998864 247999
Q ss_pred EEEcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 045638 340 VVMNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYG 377 (437)
Q Consensus 340 VImnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~ 377 (437)
|++|+|. .-+.++.+..+++++ +++-||+
T Consensus 167 v~LDmp~-PW~~le~~~~~Lkpg--------g~~~~y~ 195 (256)
T COG2519 167 VFLDLPD-PWNVLEHVSDALKPG--------GVVVVYS 195 (256)
T ss_pred EEEcCCC-hHHHHHHHHHHhCCC--------cEEEEEc
Confidence 9999999 779999999999997 5777776
No 135
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=4.1e-07 Score=85.87 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=66.1
Q ss_pred cceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V 340 (437)
-+.++++|||+|..+-.+++. +....|.|+||+|.+..++.++.|++. +.+++.|..+-++ .++.|.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~-------~~~VDvL 114 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLR-------NESVDVL 114 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhc-------cCCccEE
Confidence 378999999999999988885 347999999999999999999999984 8999999988875 3679999
Q ss_pred EEcCCc
Q 045638 341 VMNLPN 346 (437)
Q Consensus 341 ImnpP~ 346 (437)
+.|||+
T Consensus 115 vfNPPY 120 (209)
T KOG3191|consen 115 VFNPPY 120 (209)
T ss_pred EECCCc
Confidence 999997
No 136
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.48 E-value=4.3e-07 Score=86.30 Aligned_cols=89 Identities=19% Similarity=0.153 Sum_probs=68.3
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc-
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN- 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn- 343 (437)
.++||++||.|--|+.+|++|..|+|+|+|+.|++.+++-++.++++ |++...|..++.. ...+|.|+..
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~-------~~~yD~I~st~ 102 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF-------PEEYDFIVSTV 102 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS--------TTTEEEEEEES
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc-------cCCcCEEEEEE
Confidence 78999999999999999999999999999999999999999999996 9999999876531 3569998752
Q ss_pred ----CCc-ChHHHHHHHHHHhcCC
Q 045638 344 ----LPN-DATEFLDAFRGIYRDR 362 (437)
Q Consensus 344 ----pP~-~a~eFLdaa~~llk~~ 362 (437)
++. .....++.....++++
T Consensus 103 v~~fL~~~~~~~i~~~m~~~~~pG 126 (192)
T PF03848_consen 103 VFMFLQRELRPQIIENMKAATKPG 126 (192)
T ss_dssp SGGGS-GGGHHHHHHHHHHTEEEE
T ss_pred EeccCCHHHHHHHHHHHHhhcCCc
Confidence 222 3345666666666765
No 137
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.5e-07 Score=99.57 Aligned_cols=105 Identities=25% Similarity=0.188 Sum_probs=90.9
Q ss_pred ceEEeecCccchhHHHHhcc--CC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
-+|||.+|++|.-+|..|+. |. .|+|+|+|+.|++..++|++.|++++.+++..+||.-.+-.... ....||.|=
T Consensus 111 l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~--~~~~FDvID 188 (525)
T KOG1253|consen 111 LRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPM--VAKFFDVID 188 (525)
T ss_pred chHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccc--cccccceEe
Confidence 57999999999999999995 44 89999999999999999999999999999999999987754211 136799999
Q ss_pred EcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 342 MNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
+||-.++-.|||+|.+.++++ |.+-|-|-.
T Consensus 189 LDPyGs~s~FLDsAvqav~~g--------GLL~vT~TD 218 (525)
T KOG1253|consen 189 LDPYGSPSPFLDSAVQAVRDG--------GLLCVTCTD 218 (525)
T ss_pred cCCCCCccHHHHHHHHHhhcC--------CEEEEEecc
Confidence 999999999999999999987 566666654
No 138
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.48 E-value=1e-06 Score=83.07 Aligned_cols=70 Identities=26% Similarity=0.199 Sum_probs=61.0
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
..|||+|||+|.++..+++.+..|+++|+++.+++.+++++..+++.+++.+..+|.. . ....||.|++.
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-~--------~~~~fD~v~~~ 134 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE-S--------LLGRFDTVVCL 134 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch-h--------ccCCcCEEEEc
Confidence 5799999999999999999988999999999999999999998888668999999932 1 13579999875
No 139
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.46 E-value=1.2e-06 Score=85.26 Aligned_cols=81 Identities=22% Similarity=0.341 Sum_probs=65.2
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCccc---EEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT---QVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD---~VI 341 (437)
+.|+|+|||+|.++..+++++..|+|+|+|+.+++.++.++.. .++++++++|+.++... .+| .|+
T Consensus 31 ~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~--------~~d~~~~vv 99 (253)
T TIGR00755 31 DVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP--------DFPKQLKVV 99 (253)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh--------HcCCcceEE
Confidence 6899999999999999999988999999999999999988743 34799999999875321 245 999
Q ss_pred EcCCcC-hHHHHHHHH
Q 045638 342 MNLPND-ATEFLDAFR 356 (437)
Q Consensus 342 mnpP~~-a~eFLdaa~ 356 (437)
.|+|+. +...+..++
T Consensus 100 sNlPy~i~~~il~~ll 115 (253)
T TIGR00755 100 SNLPYNISSPLIFKLL 115 (253)
T ss_pred EcCChhhHHHHHHHHh
Confidence 999984 334444443
No 140
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.45 E-value=7.3e-07 Score=87.73 Aligned_cols=101 Identities=14% Similarity=0.188 Sum_probs=79.1
Q ss_pred cceEEeecCccchhHHHHhcc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHHHhhcCCcccE
Q 045638 264 VQMTGDVFAGVGPISIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF-IDAMFASQKAHKITQ 339 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkk-g--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~-l~~~~~~~~~~~fD~ 339 (437)
+.+|++.|.|+|.+++.+|+. | .+|+..|.+++-++.+++|++.+++.++|++.+.|+.+. ... .....+|.
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~----~~~~~~Da 116 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE----ELESDFDA 116 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST----T-TTSEEE
T ss_pred CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc----cccCcccE
Confidence 489999999999999999984 2 499999999999999999999999998999999998632 111 01356999
Q ss_pred EEEcCCcChHHHHHHHHHHh-cCCCCCCCCCccEEEEEe
Q 045638 340 VVMNLPNDATEFLDAFRGIY-RDRPEDVKFTFPKTHVYG 377 (437)
Q Consensus 340 VImnpP~~a~eFLdaa~~ll-k~~~~~~~~~~p~IHvY~ 377 (437)
|++|+|. .-+.++.+.++| +++ |+|-||.
T Consensus 117 vfLDlp~-Pw~~i~~~~~~L~~~g--------G~i~~fs 146 (247)
T PF08704_consen 117 VFLDLPD-PWEAIPHAKRALKKPG--------GRICCFS 146 (247)
T ss_dssp EEEESSS-GGGGHHHHHHHE-EEE--------EEEEEEE
T ss_pred EEEeCCC-HHHHHHHHHHHHhcCC--------ceEEEEC
Confidence 9999998 557788888889 665 5677664
No 141
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.44 E-value=1.8e-06 Score=86.47 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=85.9
Q ss_pred cceEEeecCccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+.+|||+|||-|.+++.||++ |++|+|++++++.++.+++-++.-|++++++++..|-+++- +.||+||.
T Consensus 73 G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---------e~fDrIvS 143 (283)
T COG2230 73 GMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---------EPFDRIVS 143 (283)
T ss_pred CCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---------cccceeee
Confidence 389999999999999999997 89999999999999999999999999999999999999873 34999884
Q ss_pred cC------CcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 045638 343 NL------PNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKAR 382 (437)
Q Consensus 343 np------P~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~ 382 (437)
== +..-..|+..+.++++++ |.+-.|++....
T Consensus 144 vgmfEhvg~~~~~~ff~~~~~~L~~~--------G~~llh~I~~~~ 181 (283)
T COG2230 144 VGMFEHVGKENYDDFFKKVYALLKPG--------GRMLLHSITGPD 181 (283)
T ss_pred hhhHHHhCcccHHHHHHHHHhhcCCC--------ceEEEEEecCCC
Confidence 31 123468888888899887 677777776543
No 142
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.44 E-value=9.1e-07 Score=87.02 Aligned_cols=100 Identities=12% Similarity=0.036 Sum_probs=78.7
Q ss_pred ceEEeecCccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.+|||++||+|..+..+|+. +++|+++|++|.+++.+++++.. .+++.+.++|+.+.. + +..+||.|++.
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~---~---~~~~FD~V~s~ 124 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKD---F---PENTFDMIYSR 124 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCC---C---CCCCeEEEEEh
Confidence 78999999999999998875 67999999999999999988754 247999999986431 1 24679999985
Q ss_pred C-----C-cChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 045638 344 L-----P-NDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKA 381 (437)
Q Consensus 344 p-----P-~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~ 381 (437)
. | .....++..+.++++++ |.+-+.++...
T Consensus 125 ~~l~h~~~~d~~~~l~~i~r~LkPG--------G~lvi~d~~~~ 160 (263)
T PTZ00098 125 DAILHLSYADKKKLFEKCYKWLKPN--------GILLITDYCAD 160 (263)
T ss_pred hhHHhCCHHHHHHHHHHHHHHcCCC--------cEEEEEEeccc
Confidence 2 2 24468899999999997 67767666543
No 143
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.42 E-value=1.5e-06 Score=86.62 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=80.3
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|+|++||+|.+++.++++ +.+|+++|+ |.+++.+++|++.+++.++++++.+|+.+.. ...+|.|++
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--------~~~~D~v~~ 221 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--------YPEADAVLF 221 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC--------CCCCCEEEe
Confidence 68999999999999999997 358999998 8999999999999999889999999987531 123687654
Q ss_pred cC-----C-cChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 343 NL-----P-NDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 343 np-----P-~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
.- + ......+..+.+.++++ |.+.++++.-
T Consensus 222 ~~~lh~~~~~~~~~il~~~~~~L~pg--------G~l~i~d~~~ 257 (306)
T TIGR02716 222 CRILYSANEQLSTIMCKKAFDAMRSG--------GRLLILDMVI 257 (306)
T ss_pred EhhhhcCChHHHHHHHHHHHHhcCCC--------CEEEEEEecc
Confidence 42 2 22356788888999886 6899998854
No 144
>PRK01581 speE spermidine synthase; Validated
Probab=98.41 E-value=2.2e-06 Score=88.64 Aligned_cols=93 Identities=14% Similarity=0.229 Sum_probs=75.7
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHH---HHc--CC-CCcEEEEEccHHHHHHHHHHhhcCCc
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNS---VLN--KL-EKKIEVFNMDGRRFIDAMFASQKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~Na---klN--kv-~~~V~vi~gDa~~~l~~~~~~~~~~~ 336 (437)
..||++|+|.|..+..+++.. .+|+++|++|++++.++..- ..| .+ +.+++++.+|+++++.. ....
T Consensus 152 krVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-----~~~~ 226 (374)
T PRK01581 152 KRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-----PSSL 226 (374)
T ss_pred CEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-----cCCC
Confidence 899999999999888888864 59999999999999999631 123 23 35899999999999864 2457
Q ss_pred ccEEEEcCCcC---------hHHHHHHHHHHhcCC
Q 045638 337 ITQVVMNLPND---------ATEFLDAFRGIYRDR 362 (437)
Q Consensus 337 fD~VImnpP~~---------a~eFLdaa~~llk~~ 362 (437)
||.|++|+|.. ..+|+..+.+.|+++
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg 261 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTED 261 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC
Confidence 99999998752 257999999999987
No 145
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.41 E-value=2e-06 Score=89.32 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=75.3
Q ss_pred ceEEeecCccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.+|||+|||+|.+++.+|+. |++|+|+|++|++++.++++++ ++ .+++..+|..+. .++||.|++.
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---------~~~fD~Ivs~ 235 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---------NGQFDRIVSV 235 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---------CCCCCEEEEe
Confidence 57999999999999999985 7899999999999999999884 44 378888987653 2469999876
Q ss_pred CC------cChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 344 LP------NDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 344 pP------~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
.. .....++..+.++++++ |.+-++++..
T Consensus 236 ~~~ehvg~~~~~~~l~~i~r~LkpG--------G~lvl~~i~~ 270 (383)
T PRK11705 236 GMFEHVGPKNYRTYFEVVRRCLKPD--------GLFLLHTIGS 270 (383)
T ss_pred CchhhCChHHHHHHHHHHHHHcCCC--------cEEEEEEccC
Confidence 42 12357889999999987 5666666543
No 146
>PLN02366 spermidine synthase
Probab=98.40 E-value=7.5e-06 Score=82.93 Aligned_cols=94 Identities=11% Similarity=0.157 Sum_probs=77.6
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHH-c-CCC-CcEEEEEccHHHHHHHHHHhhcCCcccE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVL-N-KLE-KKIEVFNMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~Nakl-N-kv~-~~V~vi~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
++||++|+|.|..+..+++.. .+|..+|++|..++.+++.... + +++ .+++++.+|+++++... +..+||.
T Consensus 93 krVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~----~~~~yDv 168 (308)
T PLN02366 93 KKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA----PEGTYDA 168 (308)
T ss_pred CeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc----cCCCCCE
Confidence 689999999999999999873 4899999999999999998753 2 233 48999999999998642 1357999
Q ss_pred EEEcCCc--------ChHHHHHHHHHHhcCC
Q 045638 340 VVMNLPN--------DATEFLDAFRGIYRDR 362 (437)
Q Consensus 340 VImnpP~--------~a~eFLdaa~~llk~~ 362 (437)
||+|.+. ...+|+..+.+.|+++
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pg 199 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPG 199 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 9999764 2468999999999986
No 147
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.39 E-value=3.5e-06 Score=80.17 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=75.5
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
..|||+|||+|.+++.+++.++.|+++|+|+.+++.+++|+..++. .+++..+|+.++... ..+.||.|++..
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~fD~Ii~~~ 122 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAE-----HPGQFDVVTCME 122 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhh-----cCCCccEEEEhh
Confidence 6799999999999999999988999999999999999999988776 478888998876532 246799998864
Q ss_pred Cc----ChHHHHHHHHHHhcCC
Q 045638 345 PN----DATEFLDAFRGIYRDR 362 (437)
Q Consensus 345 P~----~a~eFLdaa~~llk~~ 362 (437)
.. ....++..+.+.++++
T Consensus 123 ~l~~~~~~~~~l~~~~~~L~~g 144 (233)
T PRK05134 123 MLEHVPDPASFVRACAKLVKPG 144 (233)
T ss_pred HhhccCCHHHHHHHHHHHcCCC
Confidence 32 3457788888888876
No 148
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.36 E-value=1.1e-06 Score=92.69 Aligned_cols=100 Identities=12% Similarity=0.000 Sum_probs=76.1
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
.+|||+|||+|.++..+++.+.+|+|+|++|.+++.. .+.|+...+++++++|+.+.... + +..+||.|+++.
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a---~~~~~~~~~i~~~~~d~~~~~~~-~---~~~~fD~I~~~~ 111 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKN---ESINGHYKNVKFMCADVTSPDLN-I---SDGSVDLIFSNW 111 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHH---HHHhccCCceEEEEecccccccC-C---CCCCEEEEehhh
Confidence 6899999999999999999888999999999999754 33455445799999998642111 1 246799999997
Q ss_pred CcC------hHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 345 PND------ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 345 P~~------a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
+.. ..+++..+.++++++ |.+.+++..
T Consensus 112 ~l~~l~~~~~~~~l~~~~r~Lk~g--------G~l~~~d~~ 144 (475)
T PLN02336 112 LLMYLSDKEVENLAERMVKWLKVG--------GYIFFRESC 144 (475)
T ss_pred hHHhCCHHHHHHHHHHHHHhcCCC--------eEEEEEecc
Confidence 642 257888888989886 566665543
No 149
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.35 E-value=3.5e-06 Score=89.84 Aligned_cols=101 Identities=19% Similarity=0.258 Sum_probs=83.5
Q ss_pred ceEEeecCccchhHHHHhcc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g-~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|||||||.|.=+..+|.. + ..|+|+|+++.-++.|++|+++-|+. ++.+.+.|+..+... + ...||+|+
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~-~----~~~fD~IL 188 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAA-L----PETFDAIL 188 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhh-c----hhhcCeEE
Confidence 78999999999999998874 2 38999999999999999999999997 799999999876432 1 34699999
Q ss_pred EcCCcCh--------------------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 342 MNLPNDA--------------------------TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 342 mnpP~~a--------------------------~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
+|+|=+. .+.|+.+..+++++ |++ ||.-.-
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpG--------G~L-VYSTCT 244 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPG--------GTL-VYSTCT 244 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCC--------cEE-EEECCC
Confidence 9999431 36788888999886 566 776554
No 150
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.35 E-value=6.2e-06 Score=81.19 Aligned_cols=98 Identities=10% Similarity=0.040 Sum_probs=83.1
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhh-cCCcccEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQ-KAHKITQV 340 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~-~~~~fD~V 340 (437)
..||++|+++|+=|+.+|+. +.+|+++|.||+.++.+++|++..++.++|+++.||+.+.++.+.... ..++||.|
T Consensus 81 k~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~i 160 (247)
T PLN02589 81 KNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFI 160 (247)
T ss_pred CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEE
Confidence 78999999999999988873 459999999999999999999999999999999999999998764321 12579999
Q ss_pred EEcCCc-ChHHHHHHHHHHhcCC
Q 045638 341 VMNLPN-DATEFLDAFRGIYRDR 362 (437)
Q Consensus 341 ImnpP~-~a~eFLdaa~~llk~~ 362 (437)
++|--. .-..+++.+.++++++
T Consensus 161 FiDadK~~Y~~y~~~~l~ll~~G 183 (247)
T PLN02589 161 FVDADKDNYINYHKRLIDLVKVG 183 (247)
T ss_pred EecCCHHHhHHHHHHHHHhcCCC
Confidence 999654 3357788888888886
No 151
>PRK06922 hypothetical protein; Provisional
Probab=98.34 E-value=2.3e-06 Score=93.98 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=78.6
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|||+|||+|.++..+|+. +..|+|+|+++.+++.++.++..++. ++.++++|+.++. ..+ ++.+||.|++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp-~~f---edeSFDvVVs 493 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLS-SSF---EKESVDTIVY 493 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCc-ccc---CCCCEEEEEE
Confidence 78999999999999888874 46999999999999999999876654 5889999998742 212 2467999999
Q ss_pred cCCc-----------------ChHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 045638 343 NLPN-----------------DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGF 378 (437)
Q Consensus 343 npP~-----------------~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F 378 (437)
+++. ....++..+.++++++ |.+.+.+.
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG--------GrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG--------GRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC--------cEEEEEeC
Confidence 8542 2357888889999987 56666543
No 152
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.34 E-value=4.5e-06 Score=84.73 Aligned_cols=91 Identities=11% Similarity=-0.013 Sum_probs=69.7
Q ss_pred ceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.+|||+|||.|.+++.++..|. .|+++|.++.++...+...+..+...++.++.+|+.+... ...||.|++.
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~FD~V~s~ 196 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKAFDTVFSM 196 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCCcCEEEEC
Confidence 7899999999999999999876 7999999998876544433333333479999999876521 3579999975
Q ss_pred CC----cChHHHHHHHHHHhcCC
Q 045638 344 LP----NDATEFLDAFRGIYRDR 362 (437)
Q Consensus 344 pP----~~a~eFLdaa~~llk~~ 362 (437)
-- .+...++..+.+.++++
T Consensus 197 ~vl~H~~dp~~~L~~l~~~LkpG 219 (322)
T PRK15068 197 GVLYHRRSPLDHLKQLKDQLVPG 219 (322)
T ss_pred ChhhccCCHHHHHHHHHHhcCCC
Confidence 21 24568899999999886
No 153
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.32 E-value=4e-06 Score=77.91 Aligned_cols=98 Identities=21% Similarity=0.305 Sum_probs=77.6
Q ss_pred ceEEeecCccchhHHHHhccC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg---~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
.+|+|+|||.|.++..+++.. ++++++|+||.+++.+++|.. ..+++.++.+|+.+.. . ....||.|+
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~---~---~~~~~D~i~ 111 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP---F---EDNSFDAVT 111 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC---C---CCCcEEEEE
Confidence 689999999999999999864 389999999999999999876 3347899999998753 1 235799998
Q ss_pred EcC----CcChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 342 MNL----PNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 342 mnp----P~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
++. ......++..+.++++++ |++-+.++.
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~L~~g--------G~l~~~~~~ 145 (223)
T TIGR01934 112 IAFGLRNVTDIQKALREMYRVLKPG--------GRLVILEFS 145 (223)
T ss_pred EeeeeCCcccHHHHHHHHHHHcCCC--------cEEEEEEec
Confidence 763 234578899999999986 566666554
No 154
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.30 E-value=5.7e-06 Score=80.51 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=88.4
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.++|++|||.|-|.+.+|++. ...+|+|+-...+..+..-++..++. |+.++++||.+++..+. ++++.|.|.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~---~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLI---PDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcC---CCCCeeEEEE
Confidence 489999999999999999973 48999999999999999999999998 89999999999998765 3458999999
Q ss_pred cCCc------------ChHHHHHHHHHHhcCCCCCCCCCccEEEE
Q 045638 343 NLPN------------DATEFLDAFRGIYRDRPEDVKFTFPKTHV 375 (437)
Q Consensus 343 npP~------------~a~eFLdaa~~llk~~~~~~~~~~p~IHv 375 (437)
|.|. ...+|+..+.+.|+++ |.||+
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~g--------G~l~~ 162 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPG--------GVLHF 162 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCC--------CEEEE
Confidence 9995 3569999999999997 68887
No 155
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.28 E-value=2.5e-06 Score=86.58 Aligned_cols=70 Identities=23% Similarity=0.112 Sum_probs=58.0
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHHHhhcCCcccEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL----EKKIEVFNMDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv----~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V 340 (437)
.+|||++||+|.+++.++++|+.|+|+|+||.+++.+++|++.... ..++.+..+|..++ .+.||.|
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---------~~~fD~V 216 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---------SGKYDTV 216 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---------CCCcCEE
Confidence 5899999999999999999999999999999999999999886421 12578888887543 2569988
Q ss_pred EEc
Q 045638 341 VMN 343 (437)
Q Consensus 341 Imn 343 (437)
++.
T Consensus 217 v~~ 219 (315)
T PLN02585 217 TCL 219 (315)
T ss_pred EEc
Confidence 754
No 156
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.28 E-value=5.7e-06 Score=76.62 Aligned_cols=117 Identities=21% Similarity=0.309 Sum_probs=71.0
Q ss_pred cceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccHHHHH-HHHHHhhcCCccc
Q 045638 264 VQMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNK--LEKKIEVFNMDGRRFI-DAMFASQKAHKIT 338 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNk--v~~~V~vi~gDa~~~l-~~~~~~~~~~~fD 338 (437)
+.+||++|||+|..||.+|+. ++.|++-|.++ +++.++.|++.|+ ...++.+...|-.+.. .... ....||
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~---~~~~~D 121 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL---EPHSFD 121 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH---S-SSBS
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc---ccccCC
Confidence 489999999999999999998 56999999999 9999999999998 5567888887754422 2222 235799
Q ss_pred EEEEc-CC---cChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHH
Q 045638 339 QVVMN-LP---NDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIR 393 (437)
Q Consensus 339 ~VImn-pP---~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~ 393 (437)
.|+.- .- .....++..+..+++++ + ..+-.|..-... ...+.++++
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~---~----~vl~~~~~R~~~--~~~F~~~~~ 171 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPN---G----KVLLAYKRRRKS--EQEFFDRLK 171 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT----T----TEEEEEE-S-TG--GCHHHHHH-
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCC---C----EEEEEeCEecHH--HHHHHHHhh
Confidence 88754 33 34467788888888765 1 355666554222 234555544
No 157
>PLN03075 nicotianamine synthase; Provisional
Probab=98.27 E-value=5.5e-06 Score=83.58 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=73.7
Q ss_pred ceEEeecCccchhH-HHHhc---cCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHHHhhcCCcccE
Q 045638 265 QMTGDVFAGVGPIS-IPAAK---IVKRVYANDLNPYAVDYLERNSVL-NKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFAGvG~Fa-I~aAk---kg~~V~A~DlNP~Ave~L~~Nakl-Nkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
++|+|+|||.|+++ +.+++ .+.+++++|+||++++.++++++. .++.+++++..+|+.+.... ...||.
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~------l~~FDl 198 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES------LKEYDV 198 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc------cCCcCE
Confidence 88999999988774 44443 245899999999999999999964 78888899999999885321 256999
Q ss_pred EEEcC-----CcChHHHHHHHHHHhcCC
Q 045638 340 VVMNL-----PNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 340 VImnp-----P~~a~eFLdaa~~llk~~ 362 (437)
|+++- +....+.++.+.+.++++
T Consensus 199 VF~~ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 199 VFLAALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred EEEecccccccccHHHHHHHHHHhcCCC
Confidence 99983 134568899999999986
No 158
>PRK08317 hypothetical protein; Provisional
Probab=98.27 E-value=6e-06 Score=77.01 Aligned_cols=90 Identities=19% Similarity=0.143 Sum_probs=71.4
Q ss_pred ceEEeecCccchhHHHHhccC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg---~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
.+|||+|||+|.+++.++... ++|+++|++|.+++.++.+.. ....++.+.++|+.+.. + ....||.|+
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~---~---~~~~~D~v~ 92 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP---F---PDGSFDAVR 92 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC---C---CCCCceEEE
Confidence 689999999999999998852 589999999999999999833 22347899999986542 1 245799999
Q ss_pred EcCCc----ChHHHHHHHHHHhcCC
Q 045638 342 MNLPN----DATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~----~a~eFLdaa~~llk~~ 362 (437)
++... ....++..+.++++++
T Consensus 93 ~~~~~~~~~~~~~~l~~~~~~L~~g 117 (241)
T PRK08317 93 SDRVLQHLEDPARALAEIARVLRPG 117 (241)
T ss_pred EechhhccCCHHHHHHHHHHHhcCC
Confidence 87542 3567899999999987
No 159
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.25 E-value=4.6e-06 Score=78.07 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=76.2
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|||+|||+|.++..+++.+ .+|+++|++|.+++.++.+.. .++.++.+|+.+... +..+||.|++
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~------~~~~fD~vi~ 104 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL------EDSSFDLIVS 104 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC------CCCceeEEEE
Confidence 479999999999999999875 478999999999998887654 268889999876531 2467999999
Q ss_pred cCCc----ChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 343 NLPN----DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 343 npP~----~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
+... ....++..+.++++++ |++-+-++..
T Consensus 105 ~~~l~~~~~~~~~l~~~~~~L~~~--------G~l~~~~~~~ 138 (240)
T TIGR02072 105 NLALQWCDDLSQALSELARVLKPG--------GLLAFSTFGP 138 (240)
T ss_pred hhhhhhccCHHHHHHHHHHHcCCC--------cEEEEEeCCc
Confidence 8653 3468899999999986 5666655543
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.24 E-value=1.3e-05 Score=77.75 Aligned_cols=104 Identities=12% Similarity=0.074 Sum_probs=88.8
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHHHhhcCCcccEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN-MDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~-gDa~~~l~~~~~~~~~~~fD~V 340 (437)
..||.+|.++|+=|+.+|.. ..+++++|.||+.++.+++|++.-+++++|+.+. +|+.+.+... ..++||.|
T Consensus 61 k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~----~~~~fDli 136 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL----LDGSFDLV 136 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc----cCCCccEE
Confidence 89999999999999999874 2489999999999999999999999998899999 6999988652 24789999
Q ss_pred EEcCCc-ChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 341 VMNLPN-DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 341 ImnpP~-~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
++|-=. .-.+|++.+.++++++ |.|-+....-
T Consensus 137 FIDadK~~yp~~le~~~~lLr~G--------Gliv~DNvl~ 169 (219)
T COG4122 137 FIDADKADYPEYLERALPLLRPG--------GLIVADNVLF 169 (219)
T ss_pred EEeCChhhCHHHHHHHHHHhCCC--------cEEEEeeccc
Confidence 999543 4579999999999997 5777766543
No 161
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.23 E-value=9.3e-07 Score=87.97 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=57.4
Q ss_pred ceEEeecCccchhHHHHhc---------cCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHHHhhcC
Q 045638 265 QMTGDVFAGVGPISIPAAK---------IVKRVYANDLNPYAVDYLERNSVLNKLEK-KIEVFNMDGRRFIDAMFASQKA 334 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk---------kg~~V~A~DlNP~Ave~L~~NaklNkv~~-~V~vi~gDa~~~l~~~~~~~~~ 334 (437)
++|+|.+||+|.|-+.+.+ ....++|+|++|.++..++.|+.++++.. +..+.++|...-.... ..
T Consensus 48 ~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~----~~ 123 (311)
T PF02384_consen 48 DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI----KN 123 (311)
T ss_dssp EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT----ST
T ss_pred ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc----cc
Confidence 6899999999999999887 24589999999999999999999988753 3468888875432100 13
Q ss_pred CcccEEEEcCCcCh
Q 045638 335 HKITQVVMNLPNDA 348 (437)
Q Consensus 335 ~~fD~VImnpP~~a 348 (437)
..||.||+|||...
T Consensus 124 ~~~D~ii~NPPf~~ 137 (311)
T PF02384_consen 124 QKFDVIIGNPPFGS 137 (311)
T ss_dssp --EEEEEEE--CTC
T ss_pred cccccccCCCCccc
Confidence 57999999999743
No 162
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.23 E-value=2.4e-06 Score=84.58 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=72.7
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEccHHHHHHHHHHhhcCCcccE
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEK-----KIEVFNMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~-----~V~vi~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
..|||++||.|-++.|+|+.|+.|.|+|+.+.+++.+++-.+.+=+.+ ++++.+.|+.... +.||.
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---------~~fDa 161 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---------GKFDA 161 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---------cccce
Confidence 469999999999999999999999999999999999999976664432 4677777777653 35999
Q ss_pred EEEcCC----cChHHHHHHHHHHhcCC
Q 045638 340 VVMNLP----NDATEFLDAFRGIYRDR 362 (437)
Q Consensus 340 VImnpP----~~a~eFLdaa~~llk~~ 362 (437)
|++--- ....+|++.....++++
T Consensus 162 VvcsevleHV~dp~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 162 VVCSEVLEHVKDPQEFLNCLSALLKPN 188 (282)
T ss_pred eeeHHHHHHHhCHHHHHHHHHHHhCCC
Confidence 886532 24569999999999987
No 163
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.22 E-value=1.7e-06 Score=82.25 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=55.1
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
..|||+|||+|.++..+++. ++.|+|+|+||.+++.+++|. . ++.++++|+.+.. +..+||.|++
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~-~~~~~~~d~~~~~-------~~~sfD~V~~ 111 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----P-NINIIQGSLFDPF-------KDNFFDLVLT 111 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----C-CCcEEEeeccCCC-------CCCCEEEEEE
Confidence 67999999999999999886 579999999999999998764 2 4667888887621 2568999998
Q ss_pred cC
Q 045638 343 NL 344 (437)
Q Consensus 343 np 344 (437)
+-
T Consensus 112 ~~ 113 (204)
T TIGR03587 112 KG 113 (204)
T ss_pred CC
Confidence 64
No 164
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.19 E-value=1.3e-05 Score=81.34 Aligned_cols=99 Identities=11% Similarity=-0.048 Sum_probs=73.1
Q ss_pred ceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.+|+|+|||+|.+++.++..|+ .|+|+|.++.++..++...+.-+...++.+..+|+.+... ...||.|+++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~FD~V~s~ 195 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAFDTVFSM 195 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCcCEEEEc
Confidence 7899999999999999999886 7999999999887654333321222368888888776521 2479999876
Q ss_pred CC----cChHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 045638 344 LP----NDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGF 378 (437)
Q Consensus 344 pP----~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F 378 (437)
-- .+...+|..+.++++++ |.+-+.++
T Consensus 196 gvL~H~~dp~~~L~el~r~LkpG--------G~Lvletl 226 (314)
T TIGR00452 196 GVLYHRKSPLEHLKQLKHQLVIK--------GELVLETL 226 (314)
T ss_pred chhhccCCHHHHHHHHHHhcCCC--------CEEEEEEE
Confidence 32 24568999999999987 56655544
No 165
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.19 E-value=3e-06 Score=74.23 Aligned_cols=57 Identities=32% Similarity=0.279 Sum_probs=51.2
Q ss_pred eEEeecCccchhHHHHhccCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHH
Q 045638 266 MTGDVFAGVGPISIPAAKIVK--RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 323 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAkkg~--~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~ 323 (437)
+|+|+|||+|.+++.+++.+. +|+++|.||.+++.+++|++.|++. ++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 589999999999999998754 7999999999999999999999987 58888877654
No 166
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=1.3e-05 Score=82.68 Aligned_cols=95 Identities=21% Similarity=0.246 Sum_probs=78.5
Q ss_pred cceEEeecCccchhHHHHhcc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccE
Q 045638 264 VQMTGDVFAGVGPISIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkk----g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
+++|+||+|+.|+=+..+|.. |..|+|+|+++.=++.+++|+++-|+. ++.+++.|++.+..... ....||+
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~---~~~~fD~ 232 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLP---GGEKFDR 232 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccccccccc---ccCcCcE
Confidence 499999999999998888874 457899999999999999999999998 59999999987654322 1225999
Q ss_pred EEEcCCcC--------------------------hHHHHHHHHHHhcCC
Q 045638 340 VVMNLPND--------------------------ATEFLDAFRGIYRDR 362 (437)
Q Consensus 340 VImnpP~~--------------------------a~eFLdaa~~llk~~ 362 (437)
|++|+|=+ -.++|+++..+++++
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G 281 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG 281 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999932 137789999999886
No 167
>PLN02823 spermine synthase
Probab=98.17 E-value=4.8e-05 Score=78.05 Aligned_cols=93 Identities=15% Similarity=0.278 Sum_probs=77.3
Q ss_pred ceEEeecCccchhHHHHhcc-C-CEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHHHhhcCCcccE
Q 045638 265 QMTGDVFAGVGPISIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNK--L-EKKIEVFNMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g-~~V~A~DlNP~Ave~L~~NaklNk--v-~~~V~vi~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
..||.+|+|.|..+..+++. + .+|.++|++|..++.++++...|+ + +.+++++.+|++++++. ...+||.
T Consensus 105 k~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-----~~~~yDv 179 (336)
T PLN02823 105 KTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-----RDEKFDV 179 (336)
T ss_pred CEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-----CCCCccE
Confidence 67999999999999988885 3 489999999999999999987664 2 35899999999999854 2467999
Q ss_pred EEEcCCc----------ChHHHHH-HHHHHhcCC
Q 045638 340 VVMNLPN----------DATEFLD-AFRGIYRDR 362 (437)
Q Consensus 340 VImnpP~----------~a~eFLd-aa~~llk~~ 362 (437)
|++|++. ...+|+. .+.+.|+++
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~ 213 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG 213 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCC
Confidence 9999643 2468998 888899886
No 168
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.16 E-value=1.3e-05 Score=74.31 Aligned_cols=96 Identities=22% Similarity=0.203 Sum_probs=66.5
Q ss_pred ceEEeecCccchhHHHHhccC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHhhcCCcccE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg---~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~~~~~~fD~ 339 (437)
++|||+|||+|.++..++++. ++|+|+|+||.. +.. +++++++|+.+. +..+...-+...||.
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~-~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIE-NVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCC-CceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 789999999999999888752 379999999954 223 578888887642 111111112457999
Q ss_pred EEEcCC-c-C-------------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 340 VVMNLP-N-D-------------ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 340 VImnpP-~-~-------------a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
|++|.+ . . ...++..+.++++++ |.+.+..+..
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg--------G~lvi~~~~~ 149 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK--------GNFVVKVFQG 149 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC--------CEEEEEEccC
Confidence 999852 1 1 146788888888886 5776655543
No 169
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.15 E-value=1.3e-05 Score=76.54 Aligned_cols=145 Identities=19% Similarity=0.110 Sum_probs=93.4
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
..++++|||+|-|+..+|.+..+++|+|++|.|++.+++.+. +.+ +|++.++|.-++. +.+.||.||+-=
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~~-~V~~~~~dvp~~~-------P~~~FDLIV~SE 114 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GLP-HVEWIQADVPEFW-------PEGRFDLIVLSE 114 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T-S-SEEEEES-TTT----------SS-EEEEEEES
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CCC-CeEEEECcCCCCC-------CCCCeeEEEEeh
Confidence 469999999999999999997799999999999999998765 455 7999999998875 367899998762
Q ss_pred C--cC-----hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC--Cccc-HHHHHHHHHHhcccceeEEEeEEecCC
Q 045638 345 P--ND-----ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARD--PEFD-FHERIRIALAEVAVNVEMRRVRLVAPG 414 (437)
Q Consensus 345 P--~~-----a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d--~~~d-~~eRI~~~L~~~~~~v~vr~VR~VAP~ 414 (437)
- +. ...+++.+...+.++ |.+-+=.|.++.- -... -.+-|...+.+...+++...++.=+|+
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pg--------G~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~ 186 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPG--------GHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPN 186 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEE--------EEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTT
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCC--------CEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCCC
Confidence 2 11 234667777777775 3433322321100 0000 022333445555567788889999999
Q ss_pred CcEEEEEEEEccc
Q 045638 415 KWMLFASFVLPES 427 (437)
Q Consensus 415 k~m~cisFrLp~~ 427 (437)
..-+-+.|+-|.+
T Consensus 187 ~~~~~~~~~~~~~ 199 (201)
T PF05401_consen 187 EDCLLARFRNPVS 199 (201)
T ss_dssp SEEEEEEEE--SS
T ss_pred CceEeeeecCCcC
Confidence 9999999998864
No 170
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.13 E-value=3.9e-06 Score=80.53 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=67.9
Q ss_pred ceEEeecCccchhHHHHhcc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|||+|||+|+++-.+|.. | ..|+++|.+|..++.+++|++..++. ||.++.+|+..-... ...||+|+
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~------~apfD~I~ 146 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPE------EAPFDRII 146 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGG------G-SEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhcccc------CCCcCEEE
Confidence 89999999999999999985 3 27999999999999999999999998 899999999875432 34699999
Q ss_pred EcCCcChHHHHHHHHHHhcCC
Q 045638 342 MNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~ 362 (437)
.+--... .-..+...++.+
T Consensus 147 v~~a~~~--ip~~l~~qL~~g 165 (209)
T PF01135_consen 147 VTAAVPE--IPEALLEQLKPG 165 (209)
T ss_dssp ESSBBSS----HHHHHTEEEE
T ss_pred Eeeccch--HHHHHHHhcCCC
Confidence 9854422 123455557765
No 171
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.12 E-value=1.1e-05 Score=70.98 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=69.0
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
..|||+|||.|.++..+++.|.+|+++|+||.+++. . ++...+.+...... +...||.|+++-
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~-~~~~~~~~~~~~~~------~~~~fD~i~~~~ 86 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------R-NVVFDNFDAQDPPF------PDGSFDLIICND 86 (161)
T ss_dssp SEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------T-TSEEEEEECHTHHC------HSSSEEEEEEES
T ss_pred CEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------h-hhhhhhhhhhhhhc------cccchhhHhhHH
Confidence 789999999999999999999999999999999988 1 23333333332211 257899999884
Q ss_pred Cc----ChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 345 PN----DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 345 P~----~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
-- ...++|..+.++++++ |++.+..+..
T Consensus 87 ~l~~~~d~~~~l~~l~~~Lkpg--------G~l~~~~~~~ 118 (161)
T PF13489_consen 87 VLEHLPDPEEFLKELSRLLKPG--------GYLVISDPNR 118 (161)
T ss_dssp SGGGSSHHHHHHHHHHHCEEEE--------EEEEEEEEBT
T ss_pred HHhhcccHHHHHHHHHHhcCCC--------CEEEEEEcCC
Confidence 32 3568899999999986 6777777654
No 172
>PRK05785 hypothetical protein; Provisional
Probab=98.12 E-value=1.1e-05 Score=77.68 Aligned_cols=82 Identities=17% Similarity=0.126 Sum_probs=64.4
Q ss_pred ceEEeecCccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.+|||++||+|.++..+++. +..|+|+|++|.+++.+++. ...+++|+.+.. + +..+||.|+++
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp---~---~d~sfD~v~~~ 117 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALP---F---RDKSFDVVMSS 117 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCC---C---CCCCEEEEEec
Confidence 57999999999999999988 57999999999999987653 124678887642 1 25789999987
Q ss_pred CCc----ChHHHHHHHHHHhcC
Q 045638 344 LPN----DATEFLDAFRGIYRD 361 (437)
Q Consensus 344 pP~----~a~eFLdaa~~llk~ 361 (437)
.-- .....+.++.+++++
T Consensus 118 ~~l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 118 FALHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred ChhhccCCHHHHHHHHHHHhcC
Confidence 632 345788888888886
No 173
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.11 E-value=1.4e-05 Score=82.02 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=70.8
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|||++||+|.+++.+++. +.+|+++|++|.+++.++++...+ +++++.+|+.+.. + ....||.|++
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----~i~~i~gD~e~lp---~---~~~sFDvVIs 184 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIIEGDAEDLP---F---PTDYADRYVS 184 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----CCeEEeccHHhCC---C---CCCceeEEEE
Confidence 57999999999999998874 459999999999999999987533 5778999997642 1 2457999999
Q ss_pred cCCc----ChHHHHHHHHHHhcCC
Q 045638 343 NLPN----DATEFLDAFRGIYRDR 362 (437)
Q Consensus 343 npP~----~a~eFLdaa~~llk~~ 362 (437)
+... .....+..+.++++++
T Consensus 185 ~~~L~~~~d~~~~L~e~~rvLkPG 208 (340)
T PLN02490 185 AGSIEYWPDPQRGIKEAYRVLKIG 208 (340)
T ss_pred cChhhhCCCHHHHHHHHHHhcCCC
Confidence 7532 3457889999999987
No 174
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=3.2e-05 Score=75.37 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=85.4
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
.+++|+|..+|+=++..|.. +.+|+|+|+|+++++...+=.+.-+++++|+++.+++.+-+.++......++||.++
T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaF 154 (237)
T KOG1663|consen 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAF 154 (237)
T ss_pred ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEE
Confidence 78999999999988887763 679999999999999999999999999999999999999999887655567899999
Q ss_pred EcCCcCh-HHHHHHHHHHhcCC
Q 045638 342 MNLPNDA-TEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a-~eFLdaa~~llk~~ 362 (437)
.|-=... ..+....+++++.|
T Consensus 155 vDadK~nY~~y~e~~l~Llr~G 176 (237)
T KOG1663|consen 155 VDADKDNYSNYYERLLRLLRVG 176 (237)
T ss_pred EccchHHHHHHHHHHHhhcccc
Confidence 9965422 37888899999986
No 175
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.09 E-value=1.8e-05 Score=79.27 Aligned_cols=97 Identities=11% Similarity=0.007 Sum_probs=69.2
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
..|+|+|||+|.++.++++. +.+|+++|+++++++.+.++++...-.-++.++++|..+.+.... .........++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~-~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP-EPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc-ccccCCeEEEE
Confidence 46999999999999999986 469999999999999999998764322258889999887543211 00001122343
Q ss_pred Ec------CCcChHHHHHHHHHHhcCC
Q 045638 342 MN------LPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mn------pP~~a~eFLdaa~~llk~~ 362 (437)
++ +|..+..||..+.+.++++
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 33 2334678999999999886
No 176
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.09 E-value=4e-06 Score=85.74 Aligned_cols=88 Identities=25% Similarity=0.183 Sum_probs=70.7
Q ss_pred cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+.+|||+|||+|-+++.+|+.|+ +|+|+|-+.-| +.+.+.++.|++++.|+++.+.+.+..- |.+++|.||.
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L------P~eKVDiIvS 133 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL------PVEKVDIIVS 133 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec------CccceeEEee
Confidence 48999999999999999999998 99999999877 9999999999999899999999988731 2367899885
Q ss_pred cCCc---ChHHHHHHHHHH
Q 045638 343 NLPN---DATEFLDAFRGI 358 (437)
Q Consensus 343 npP~---~a~eFLdaa~~l 358 (437)
-==. .-...|++.+-+
T Consensus 134 EWMGy~Ll~EsMldsVl~A 152 (346)
T KOG1499|consen 134 EWMGYFLLYESMLDSVLYA 152 (346)
T ss_pred hhhhHHHHHhhhhhhhhhh
Confidence 4332 223445555433
No 177
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.08 E-value=1.3e-05 Score=82.05 Aligned_cols=111 Identities=22% Similarity=0.217 Sum_probs=85.0
Q ss_pred cccceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEE
Q 045638 262 FFVQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 262 FF~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V 340 (437)
|-+.+|+|+|||+|.++..||..|+ +|||+|-+. +.++++.=++-|.+.++|++|.|-..+.- -+++.|.+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdie-------LPEk~Dvi 247 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIE-------LPEKVDVI 247 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccccc-------CchhccEE
Confidence 3358999999999999999999987 999999874 77899999999999999999999988763 25679999
Q ss_pred EEcCCcCh---HHHHHH---HHHHhcCCCCCCCCCccEEEEEeccCC
Q 045638 341 VMNLPNDA---TEFLDA---FRGIYRDRPEDVKFTFPKTHVYGFSKA 381 (437)
Q Consensus 341 ImnpP~~a---~eFLda---a~~llk~~~~~~~~~~p~IHvY~F~k~ 381 (437)
|..|-... ...|+. +++.+++..+ -.-+.|.||.--|+.+
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~Gk-MfPT~gdiHlAPFsDE 293 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGK-MFPTVGDIHLAPFSDE 293 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCc-ccCcccceeecccchH
Confidence 98876532 333443 5677776511 1123567999888754
No 178
>PRK06202 hypothetical protein; Provisional
Probab=98.07 E-value=9.8e-06 Score=77.50 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=61.3
Q ss_pred ceEEeecCccchhHHHHhc----cC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCccc
Q 045638 265 QMTGDVFAGVGPISIPAAK----IV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 338 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk----kg--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD 338 (437)
.+|||+|||+|.++..+++ .| .+|+|+|++|.+++.+++++..+++ .+..+|+..+.. ...+||
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~l~~------~~~~fD 131 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV----TFRQAVSDELVA------EGERFD 131 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC----eEEEEecccccc------cCCCcc
Confidence 5799999999999998875 23 4899999999999999988765554 344444433311 246799
Q ss_pred EEEEcCCc------ChHHHHHHHHHHhc
Q 045638 339 QVVMNLPN------DATEFLDAFRGIYR 360 (437)
Q Consensus 339 ~VImnpP~------~a~eFLdaa~~llk 360 (437)
.|+++.-- ...+++..+.++++
T Consensus 132 ~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 132 VVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred EEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 99998542 12356777666665
No 179
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.04 E-value=2.9e-05 Score=76.92 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=86.3
Q ss_pred ceEEeecCccchhHHHHhcc--------CCEEEEEeCCHHHHHHHHHHHHHcCCCCc--EEEEEccHHHHHHHHHHhhcC
Q 045638 265 QMTGDVFAGVGPISIPAAKI--------VKRVYANDLNPYAVDYLERNSVLNKLEKK--IEVFNMDGRRFIDAMFASQKA 334 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--------g~~V~A~DlNP~Ave~L~~NaklNkv~~~--V~vi~gDa~~~l~~~~~~~~~ 334 (437)
..|||+.+|+|-+|+.+.+. ..+|+..|+||+++...++.++.-++... +.++++||.+.. + +.
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp---F---dd 175 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP---F---DD 175 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC---C---CC
Confidence 68999999999999988874 25899999999999999999988777544 999999998863 2 35
Q ss_pred CcccEEEEcCC----cChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 045638 335 HKITQVVMNLP----NDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARD 383 (437)
Q Consensus 335 ~~fD~VImnpP----~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d 383 (437)
.+||...|..= .....-|.++-++|+++ |.+-|-+|+|.++
T Consensus 176 ~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG--------Grf~cLeFskv~~ 220 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTHIQKALREAYRVLKPG--------GRFSCLEFSKVEN 220 (296)
T ss_pred CcceeEEEecceecCCCHHHHHHHHHHhcCCC--------cEEEEEEcccccc
Confidence 67898876532 12467789999999998 7999999999763
No 180
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.04 E-value=4.1e-07 Score=75.16 Aligned_cols=90 Identities=14% Similarity=0.098 Sum_probs=57.1
Q ss_pred EeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCC
Q 045638 268 GDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP 345 (437)
Q Consensus 268 LDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP 345 (437)
||+|||+|.++..++.. ..+++++|+||.+++.+++....+... +...++.+..+..... ...+||.|++.-.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYD----PPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC----C----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcc----cccccceehhhhh
Confidence 79999999999999987 569999999999998888888877754 3445555544433210 1247999998854
Q ss_pred c----ChHHHHHHHHHHhcCC
Q 045638 346 N----DATEFLDAFRGIYRDR 362 (437)
Q Consensus 346 ~----~a~eFLdaa~~llk~~ 362 (437)
- ...+++..+.++++++
T Consensus 76 l~~l~~~~~~l~~~~~~L~pg 96 (99)
T PF08242_consen 76 LHHLEDIEAVLRNIYRLLKPG 96 (99)
T ss_dssp TS--S-HHHHHHHHTTT-TSS
T ss_pred HhhhhhHHHHHHHHHHHcCCC
Confidence 3 3357777777777775
No 181
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1e-05 Score=80.28 Aligned_cols=75 Identities=21% Similarity=0.265 Sum_probs=63.6
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
+.|+++|+|.|.++.++++++++|+|+|+++..++.|++-.. ..+|++++++|+.++--..+ ..++.||.|+
T Consensus 32 d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l-----~~~~~vVaNl 103 (259)
T COG0030 32 DNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL-----AQPYKVVANL 103 (259)
T ss_pred CeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh-----cCCCEEEEcC
Confidence 789999999999999999999999999999999999998765 33489999999987632100 0479999999
Q ss_pred CcC
Q 045638 345 PND 347 (437)
Q Consensus 345 P~~ 347 (437)
|+.
T Consensus 104 PY~ 106 (259)
T COG0030 104 PYN 106 (259)
T ss_pred CCc
Confidence 994
No 182
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.03 E-value=1.1e-05 Score=79.40 Aligned_cols=83 Identities=11% Similarity=0.189 Sum_probs=63.8
Q ss_pred ceEEeecCccchhHHHHhcc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccE
Q 045638 265 QMTGDVFAGVGPISIPAAKI-----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-----g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
.+|||+|||+|.++..+++. ++.|+++|++|.+++.+.++. . ++.+..+|+.+.. + ...+||.
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~-~~~~~~~d~~~lp---~---~~~sfD~ 154 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----P-QVTFCVASSHRLP---F---ADQSLDA 154 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----C-CCeEEEeecccCC---C---cCCceeE
Confidence 46999999999999988764 247999999999999987652 2 5788889987642 1 2467999
Q ss_pred EEEcCCcChHHHHHHHHHHhcCC
Q 045638 340 VVMNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 340 VImnpP~~a~eFLdaa~~llk~~ 362 (437)
|+...- ..++..+.++++++
T Consensus 155 I~~~~~---~~~~~e~~rvLkpg 174 (272)
T PRK11088 155 IIRIYA---PCKAEELARVVKPG 174 (272)
T ss_pred EEEecC---CCCHHHHHhhccCC
Confidence 987542 34567888999987
No 183
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.00 E-value=7e-06 Score=88.10 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=59.4
Q ss_pred ceEEeecCccchhHHHHhccC----------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIV----------KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKA 334 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg----------~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~ 334 (437)
.+|+|.+||+|.|.+.++.+. ..++|+|++|.++..++.|+...+-. .+.+.+.|.......... ...
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~-~~~i~~~d~l~~~~~~~~-~~~ 110 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALL-EINVINFNSLSYVLLNIE-SYL 110 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCC-Cceeeecccccccccccc-ccc
Confidence 479999999999999988631 37999999999999999999877621 355666664432110000 113
Q ss_pred CcccEEEEcCCcCh
Q 045638 335 HKITQVVMNLPNDA 348 (437)
Q Consensus 335 ~~fD~VImnpP~~a 348 (437)
+.||.||.|||+..
T Consensus 111 ~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 111 DLFDIVITNPPYGR 124 (524)
T ss_pred CcccEEEeCCCccc
Confidence 47999999999853
No 184
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.99 E-value=2.5e-05 Score=78.91 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=62.9
Q ss_pred ceEEeecCccchhHHHHhccC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg---~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
.+++|+.||.|.+|..+++.. .+|+|+|.+|+|++.+++++.. .++++++++|..++..... . ....+|.|+
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~-~-~~~~vDgIl 95 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLA-E-GLGKVDGIL 95 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHH-c-CCCccCEEE
Confidence 589999999999999999873 5999999999999999988754 4589999999999865432 1 112699999
Q ss_pred EcCCc
Q 045638 342 MNLPN 346 (437)
Q Consensus 342 mnpP~ 346 (437)
+|+=-
T Consensus 96 ~DLGv 100 (296)
T PRK00050 96 LDLGV 100 (296)
T ss_pred ECCCc
Confidence 88754
No 185
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.97 E-value=1.7e-05 Score=73.88 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=62.2
Q ss_pred ceEEeecCccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
+.|||+|||+|.++..+++. ++.++++|+++.+++.++. + +++++++|+.+.+... ...+||.|+++
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~----~~~~~~~d~~~~l~~~----~~~sfD~Vi~~ 82 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R----GVNVIQGDLDEGLEAF----PDKSFDYVILS 82 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c----CCeEEEEEhhhccccc----CCCCcCEEEEh
Confidence 68999999999999988765 4589999999999887753 2 3678889987643211 24679999999
Q ss_pred CCc----ChHHHHHHHHHHhc
Q 045638 344 LPN----DATEFLDAFRGIYR 360 (437)
Q Consensus 344 pP~----~a~eFLdaa~~llk 360 (437)
.+- ....++..+.+..+
T Consensus 83 ~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 83 QTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred hHhHcCcCHHHHHHHHHHhCC
Confidence 753 34566777666544
No 186
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.6e-05 Score=76.62 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=72.2
Q ss_pred cceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
++.||++|||+||-+--+|+.+.+|+++|..+.-.+.+++|.+..++. ||.+.++|+..-... ...||+|+..
T Consensus 73 g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~------~aPyD~I~Vt 145 (209)
T COG2518 73 GDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPE------EAPYDRIIVT 145 (209)
T ss_pred CCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCC------CCCcCEEEEe
Confidence 489999999999999999998889999999999999999999999998 599999999876542 3579999876
Q ss_pred C--CcChHHHHHHHHHHhcCC
Q 045638 344 L--PNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 344 p--P~~a~eFLdaa~~llk~~ 362 (437)
- |.-...+++ -|+++
T Consensus 146 aaa~~vP~~Ll~----QL~~g 162 (209)
T COG2518 146 AAAPEVPEALLD----QLKPG 162 (209)
T ss_pred eccCCCCHHHHH----hcccC
Confidence 3 333334444 36654
No 187
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.94 E-value=7.6e-05 Score=74.10 Aligned_cols=140 Identities=19% Similarity=0.168 Sum_probs=88.4
Q ss_pred eEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 266 MTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
+|+|+|||+|.+++.+.+.|. .|+|+|++|.|++..+.|... .++++|..++..... ...+|.++++|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~----~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDF----IPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhc----CCCCCEEEeCC
Confidence 589999999999998888887 789999999999999988631 157788877653211 24699999999
Q ss_pred CcCh--------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCC--cccHHHHHHHHHHhcccceeEEEe
Q 045638 345 PNDA--------------TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDP--EFDFHERIRIALAEVAVNVEMRRV 408 (437)
Q Consensus 345 P~~a--------------~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~--~~d~~eRI~~~L~~~~~~v~vr~V 408 (437)
|=.. -..+-.+.++++.- .|.+-+.+.++.--. .......+...+.+.+..+..+.+
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~-------~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l 143 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTLFFEIIRILKEK-------KPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLL 143 (275)
T ss_pred CChhhhHHhhcCCCCCchHHHHHHHHHHHHhc-------CCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEE
Confidence 9411 12334444555432 267888888874211 123344555556554444433333
Q ss_pred E--Ee-cC--CCcEEEEEEE
Q 045638 409 R--LV-AP--GKWMLFASFV 423 (437)
Q Consensus 409 R--~V-AP--~k~m~cisFr 423 (437)
- +| .| ++..+.+-++
T Consensus 144 ~a~~~GvPQ~R~R~~~ia~~ 163 (275)
T cd00315 144 NASDYGVPQNRERVFIIGIR 163 (275)
T ss_pred EHHHcCCCCCCcEEEEEEEe
Confidence 2 22 23 3455555554
No 188
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.94 E-value=0.00017 Score=70.73 Aligned_cols=122 Identities=14% Similarity=0.136 Sum_probs=90.8
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEEEccHHHHHHHHHHhhcCC-ccc
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKL---EKKIEVFNMDGRRFIDAMFASQKAH-KIT 338 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNkv---~~~V~vi~gDa~~~l~~~~~~~~~~-~fD 338 (437)
+.||-+|.|.|..+-.+++.. .+|.++|++|..++.+++-...... +.+++++.+|++.++++. .. +||
T Consensus 78 ~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-----~~~~yD 152 (246)
T PF01564_consen 78 KRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-----QEEKYD 152 (246)
T ss_dssp -EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-----SST-EE
T ss_pred CceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-----cCCccc
Confidence 679999999999999998865 5999999999999999987655432 358999999999999753 34 799
Q ss_pred EEEEcCCc--------ChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHHHHHHhccc
Q 045638 339 QVVMNLPN--------DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIRIALAEVAV 401 (437)
Q Consensus 339 ~VImnpP~--------~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~~~L~~~~~ 401 (437)
+|++|++. .+.+|++.+.+.|+++ |++.+..-+.... .+....+.+.+.+...
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~--------Gv~v~~~~~~~~~--~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD--------GVLVLQAGSPFLH--PELFKSILKTLRSVFP 213 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE--------EEEEEEEEETTTT--HHHHHHHHHHHHTTSS
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCC--------cEEEEEccCcccc--hHHHHHHHHHHHHhCC
Confidence 99999875 3579999999999986 6777766333322 2344555566655433
No 189
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.93 E-value=5.2e-05 Score=75.79 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=66.4
Q ss_pred ceEEeecCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
+.||||+|+.|.-+..+|.. ...|+|+|+++.-++.++.|+++.|+. ++.+++.|+........ ...||+|+
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~----~~~fd~Vl 161 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKP----ESKFDRVL 161 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHH----TTTEEEEE
T ss_pred ccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccccccccc----ccccchhh
Confidence 88999999999999988874 249999999999999999999999998 79999999998865433 34699999
Q ss_pred EcCCc
Q 045638 342 MNLPN 346 (437)
Q Consensus 342 mnpP~ 346 (437)
.|+|=
T Consensus 162 vDaPC 166 (283)
T PF01189_consen 162 VDAPC 166 (283)
T ss_dssp EECSC
T ss_pred cCCCc
Confidence 99994
No 190
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.87 E-value=9.6e-05 Score=79.56 Aligned_cols=98 Identities=11% Similarity=0.113 Sum_probs=83.9
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+++|+|||.|-|.+.+|+.- ..++|+|+....+..+...++..++. |+.++++|+..+.. .+ +..++|.|.+
T Consensus 349 p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~-~~---~~~sv~~i~i 423 (506)
T PRK01544 349 KVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILN-DL---PNNSLDGIYI 423 (506)
T ss_pred ceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHH-hc---CcccccEEEE
Confidence 899999999999999999863 58999999999999999999888997 79999999865543 33 3567999999
Q ss_pred cCCc------------ChHHHHHHHHHHhcCCCCCCCCCccEEEE
Q 045638 343 NLPN------------DATEFLDAFRGIYRDRPEDVKFTFPKTHV 375 (437)
Q Consensus 343 npP~------------~a~eFLdaa~~llk~~~~~~~~~~p~IHv 375 (437)
|.|. ...+|++.+.+.++++ |.||+
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~g--------G~i~~ 460 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDN--------GNLVF 460 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCCC--------CEEEE
Confidence 9985 3469999999999987 68886
No 191
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.87 E-value=5e-05 Score=72.85 Aligned_cols=60 Identities=28% Similarity=0.280 Sum_probs=52.7
Q ss_pred EEeecCccchhHHHHhccCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHH
Q 045638 267 TGDVFAGVGPISIPAAKIVK--RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFID 326 (437)
Q Consensus 267 VLDlFAGvG~FaI~aAkkg~--~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~ 326 (437)
|+|+||-=|++++.++++|. +|+|+|+||..++.+++|++.+++.+++++..+|+.+.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~ 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK 62 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC
Confidence 78999999999999999886 8999999999999999999999999999999999998764
No 192
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.84 E-value=2.9e-05 Score=73.90 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=62.8
Q ss_pred ceEEeecCccchhHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk-kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.+|||+|||.|.+--.+.. +++.++++|++++.+..+. .+|+ .++++|+.+-+..+ ++.+||.|||+
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv----~rGv----~Viq~Dld~gL~~f----~d~sFD~VIls 82 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV----ARGV----SVIQGDLDEGLADF----PDQSFDYVILS 82 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH----HcCC----CEEECCHHHhHhhC----CCCCccEEehH
Confidence 7899999999999877766 6789999999999875443 3454 58999999987654 46899999998
Q ss_pred CCc----ChHHHHHHHHHHhc
Q 045638 344 LPN----DATEFLDAFRGIYR 360 (437)
Q Consensus 344 pP~----~a~eFLdaa~~llk 360 (437)
--- ...+.|.+++++-+
T Consensus 83 qtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 83 QTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred hHHHhHhHHHHHHHHHHHhcC
Confidence 432 12344555555543
No 193
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.84 E-value=7.9e-05 Score=73.27 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=76.7
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
+.|+|+|+|.|.++-.+++.+.+|+++|++|..++.|++... ..++++++++|+.++-.... -......|+.|+
T Consensus 32 ~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~---~~~~~~~vv~Nl 105 (262)
T PF00398_consen 32 DTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDL---LKNQPLLVVGNL 105 (262)
T ss_dssp SEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGH---CSSSEEEEEEEE
T ss_pred CEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHh---hcCCceEEEEEe
Confidence 789999999999999999999999999999999999998765 23489999999987632100 012456899999
Q ss_pred CcCh-HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 345 PNDA-TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 345 P~~a-~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
|+.. ..++..++..... |..+.+.+..
T Consensus 106 Py~is~~il~~ll~~~~~---------g~~~~~l~vq 133 (262)
T PF00398_consen 106 PYNISSPILRKLLELYRF---------GRVRMVLMVQ 133 (262)
T ss_dssp TGTGHHHHHHHHHHHGGG---------CEEEEEEEEE
T ss_pred cccchHHHHHHHhhcccc---------cccceEEEEe
Confidence 9843 4666666664443 4777777765
No 194
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.78 E-value=0.00017 Score=69.78 Aligned_cols=105 Identities=17% Similarity=0.137 Sum_probs=85.2
Q ss_pred ceEEeecCccchh-HHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPI-SIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIE-VFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~F-aI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~-vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
-.||.++||+|+- -..--+.+++|+++|-||.+-+++.+.++.|+-. +++ ++.+|+.+.. ++ ++.++|.||.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~-~l----~d~s~DtVV~ 151 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLP-QL----ADGSYDTVVC 151 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCc-cc----ccCCeeeEEE
Confidence 4589999999964 3333346889999999999999999999999776 566 8889998753 32 3678999987
Q ss_pred cCCc----ChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 045638 343 NLPN----DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARD 383 (437)
Q Consensus 343 npP~----~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d 383 (437)
-+-- +..+.|..++++++++ |+|.+.+..+++.
T Consensus 152 TlvLCSve~~~k~L~e~~rlLRpg--------G~iifiEHva~~y 188 (252)
T KOG4300|consen 152 TLVLCSVEDPVKQLNEVRRLLRPG--------GRIIFIEHVAGEY 188 (252)
T ss_pred EEEEeccCCHHHHHHHHHHhcCCC--------cEEEEEecccccc
Confidence 7653 6679999999999997 7899998888653
No 195
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.77 E-value=4e-05 Score=75.15 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=79.5
Q ss_pred eEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 266 MTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
+|+|+|||+|.+++-+-+.|. .|+|+|++|.|.+..+.|.. ....+|..++-...+. . .+|.++..|
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~---~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP---K-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH---H-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc---c-cceEEEecc
Confidence 589999999999999998886 79999999999999999985 6788998887654331 2 499999999
Q ss_pred CcC-------------hH-HHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCC--cccHHHHHHHHHHhcccceeEE
Q 045638 345 PND-------------AT-EFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDP--EFDFHERIRIALAEVAVNVEMR 406 (437)
Q Consensus 345 P~~-------------a~-eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~--~~d~~eRI~~~L~~~~~~v~vr 406 (437)
|=. .. ..+..++++++.- .|.+-+.+.++.-.. .....+.+...|.+.+..+...
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~-------~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~ 140 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKEL-------KPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWR 140 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHH-------S-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCceEeccccccccccccchhhHHHHHHHhhc-------cceEEEecccceeeccccccccccccccccccceeehhc
Confidence 920 11 2333444444432 167888899874321 1134455666666555444433
No 196
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.69 E-value=4.6e-05 Score=77.10 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=50.0
Q ss_pred eEEeecCccch-hHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccHHH-HHHHHHHhhcCCcccEEE
Q 045638 266 MTGDVFAGVGP-ISIPAAK-IVKRVYANDLNPYAVDYLERNSVLN-KLEKKIEVFNMDGRR-FIDAMFASQKAHKITQVV 341 (437)
Q Consensus 266 ~VLDlFAGvG~-FaI~aAk-kg~~V~A~DlNP~Ave~L~~NaklN-kv~~~V~vi~gDa~~-~l~~~~~~~~~~~fD~VI 341 (437)
++||+|+|.-. +.|-.++ .|.+++|.|++|.|++++++|++.| ++.++|+++...... .+..... ....||..+
T Consensus 105 ~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~--~~e~~dftm 182 (299)
T PF05971_consen 105 RGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ--PNERFDFTM 182 (299)
T ss_dssp EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT----S-EEEEE
T ss_pred EeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc--ccceeeEEe
Confidence 59999998764 4666666 3779999999999999999999999 999999988664322 2211111 235799999
Q ss_pred EcCCcC
Q 045638 342 MNLPND 347 (437)
Q Consensus 342 mnpP~~ 347 (437)
+|||..
T Consensus 183 CNPPFy 188 (299)
T PF05971_consen 183 CNPPFY 188 (299)
T ss_dssp E-----
T ss_pred cCCccc
Confidence 999973
No 197
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.67 E-value=0.00013 Score=70.50 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=68.4
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHH-HHHHHcCC----------CCcEEEEEccHHHHHHHHHHhhc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLE-RNSVLNKL----------EKKIEVFNMDGRRFIDAMFASQK 333 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~-~NaklNkv----------~~~V~vi~gDa~~~l~~~~~~~~ 333 (437)
.+||+.+||.|.-.+.+|.+|..|+|+|++|.|++.+. +|.....+ .++|+++++|.+++-...
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~----- 113 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED----- 113 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC-----
T ss_pred CeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh-----
Confidence 58999999999999999999999999999999999983 33221111 236899999999864321
Q ss_pred CCcccEEEE-----c-CCcChHHHHHHHHHHhcCC
Q 045638 334 AHKITQVVM-----N-LPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 334 ~~~fD~VIm-----n-pP~~a~eFLdaa~~llk~~ 362 (437)
.++||.|.= - ||..-.++...+..+++++
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~ 148 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG 148 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 135887652 2 4555678899999999987
No 198
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.67 E-value=3.8e-05 Score=73.50 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=68.9
Q ss_pred cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+.+|||++||+|--+|.+|+.|+ .|++.|+.|++...++.|++.|++. +.+...|..- - +..+|.++.
T Consensus 80 gkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g-~--------~~~~Dl~La 148 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG-S--------PPAFDLLLA 148 (218)
T ss_pred cceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC-C--------CcceeEEEe
Confidence 47899999999999999999997 8999999999999999999999985 8888877654 1 456898776
Q ss_pred cCCc----ChHHHHHHHHHHhcCC
Q 045638 343 NLPN----DATEFLDAFRGIYRDR 362 (437)
Q Consensus 343 npP~----~a~eFLdaa~~llk~~ 362 (437)
.--. .+...++.+.++...+
T Consensus 149 gDlfy~~~~a~~l~~~~~~l~~~g 172 (218)
T COG3897 149 GDLFYNHTEADRLIPWKDRLAEAG 172 (218)
T ss_pred eceecCchHHHHHHHHHHHHHhCC
Confidence 5333 2445566444444443
No 199
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.67 E-value=8.7e-05 Score=73.32 Aligned_cols=91 Identities=10% Similarity=0.090 Sum_probs=64.3
Q ss_pred eEEeecCccch----hHHHHhcc-------CCEEEEEeCCHHHHHHHHHHHH----HcC---------------------
Q 045638 266 MTGDVFAGVGP----ISIPAAKI-------VKRVYANDLNPYAVDYLERNSV----LNK--------------------- 309 (437)
Q Consensus 266 ~VLDlFAGvG~----FaI~aAkk-------g~~V~A~DlNP~Ave~L~~Nak----lNk--------------------- 309 (437)
+|+|++||+|- +|+.++.. +.+|+|+|+||.|++.+++++- ..+
T Consensus 102 ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~ 181 (264)
T smart00138 102 RIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKP 181 (264)
T ss_pred EEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEECh
Confidence 69999999994 55555542 3489999999999999998641 111
Q ss_pred -CCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCC------cChHHHHHHHHHHhcCC
Q 045638 310 -LEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP------NDATEFLDAFRGIYRDR 362 (437)
Q Consensus 310 -v~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP------~~a~eFLdaa~~llk~~ 362 (437)
+.++|++.++|+.+... +.+.||.|++.-- ......+..+.+.++++
T Consensus 182 ~ir~~V~F~~~dl~~~~~------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG 235 (264)
T smart00138 182 ELKERVRFAKHNLLAESP------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG 235 (264)
T ss_pred HHhCcCEEeeccCCCCCC------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence 22367788888766321 1457999988421 22347889999999987
No 200
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.64 E-value=0.00018 Score=70.12 Aligned_cols=105 Identities=10% Similarity=0.010 Sum_probs=77.2
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHH-------cC----CCCcEEEEEccHHHHHHHHHHhhc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVL-------NK----LEKKIEVFNMDGRRFIDAMFASQK 333 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~Nakl-------Nk----v~~~V~vi~gDa~~~l~~~~~~~~ 333 (437)
.+||+.+||-|.=++.+|.+|..|+|+|++|.|++.+.+.... +. -..+++++++|.+++-... ..
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~---~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA---NN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc---cc
Confidence 6899999999999999999999999999999999998552100 00 0236999999999863210 01
Q ss_pred CCcccEEE-----Ec-CCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 334 AHKITQVV-----MN-LPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 334 ~~~fD~VI-----mn-pP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
.+.||.|+ +- ||..-..+...+..+++++ +.+++.+|..
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg--------g~llll~~~~ 166 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN--------TQILLLVMEH 166 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC--------cEEEEEEEec
Confidence 23566542 22 4555568889999999987 6888888864
No 201
>PRK04148 hypothetical protein; Provisional
Probab=97.60 E-value=0.00021 Score=64.52 Aligned_cols=71 Identities=14% Similarity=0.044 Sum_probs=54.1
Q ss_pred ceEEeecCccch-hHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE-
Q 045638 265 QMTGDVFAGVGP-ISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM- 342 (437)
Q Consensus 265 e~VLDlFAGvG~-FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm- 342 (437)
..|+|+|||.|. ++..+++.|..|+|+|+||.+++.++++ + +.++.+|.++--..+- ..+|.|..
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~y-----~~a~liysi 84 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEIY-----KNAKLIYSI 84 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHHH-----hcCCEEEEe
Confidence 469999999997 9999999999999999999998877665 2 5678888876433322 34788764
Q ss_pred cCCcCh
Q 045638 343 NLPNDA 348 (437)
Q Consensus 343 npP~~a 348 (437)
.||..-
T Consensus 85 rpp~el 90 (134)
T PRK04148 85 RPPRDL 90 (134)
T ss_pred CCCHHH
Confidence 555533
No 202
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.54 E-value=0.00027 Score=74.20 Aligned_cols=103 Identities=22% Similarity=0.234 Sum_probs=83.2
Q ss_pred cceEEeecCccchhHHHHhc--cC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEE
Q 045638 264 VQMTGDVFAGVGPISIPAAK--IV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAk--kg-~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V 340 (437)
+++|+||+|-.|.=+..+|. ++ ..|||+|.|..-++.++.|+.+-|+. +..+.+.|+++|....+ +++||+|
T Consensus 242 gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~----~~~fDRV 316 (460)
T KOG1122|consen 242 GERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEF----PGSFDRV 316 (460)
T ss_pred CCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCccccccccc----Cccccee
Confidence 39999999999988887776 33 38999999999999999999999998 68899999998864432 3489999
Q ss_pred EEcCCcCh--------------------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 341 VMNLPNDA--------------------------TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 341 ImnpP~~a--------------------------~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
++|-|=+. .+.|.++.++++.+ =|-||.-..
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~G---------GvLVYSTCS 373 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAG---------GVLVYSTCS 373 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCC---------cEEEEEeee
Confidence 99999532 26788888888875 256776654
No 203
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.50 E-value=0.00021 Score=71.56 Aligned_cols=74 Identities=23% Similarity=0.256 Sum_probs=64.5
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
++||.++-|+|.++..+..+|++|+|+|++|.++.-+.+-.+---.+++..++.||....- ...||.+|.|+
T Consensus 60 D~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d--------~P~fd~cVsNl 131 (315)
T KOG0820|consen 60 DVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD--------LPRFDGCVSNL 131 (315)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC--------CcccceeeccC
Confidence 8999999999999999999999999999999999999987754344478999999987641 35699999999
Q ss_pred Cc
Q 045638 345 PN 346 (437)
Q Consensus 345 P~ 346 (437)
|+
T Consensus 132 Py 133 (315)
T KOG0820|consen 132 PY 133 (315)
T ss_pred Cc
Confidence 98
No 204
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.36 E-value=0.00015 Score=70.70 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=34.7
Q ss_pred ceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHH-HHHH
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDY-LERN 304 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~-L~~N 304 (437)
.+|||+|||+|.|+.+++++|+ +|+|+|+++.++.. ++.|
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC
Confidence 6899999999999999999976 89999999987765 4443
No 205
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.29 E-value=0.00012 Score=75.25 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=62.7
Q ss_pred cceEEeecCccchhHHHHhccCCEEEEEeCCHHHHH-------HHHHHHHHcCCCC-cEEEEEccHHHHHHHHHHhhcCC
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVD-------YLERNSVLNKLEK-KIEVFNMDGRRFIDAMFASQKAH 335 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave-------~L~~NaklNkv~~-~V~vi~gDa~~~l~~~~~~~~~~ 335 (437)
++.|+|.|.|+|.|-+++|.-|+.|++-||+=..+. ..+.|.++-|..+ -+.++.+|...-. +. ...
T Consensus 209 GdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~---~r--sn~ 283 (421)
T KOG2671|consen 209 GDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP---LR--SNL 283 (421)
T ss_pred CCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcc---hh--hcc
Confidence 399999999999999999999999999999988887 3455666667543 3566777765432 11 135
Q ss_pred cccEEEEcCCcChHH
Q 045638 336 KITQVVMNLPNDATE 350 (437)
Q Consensus 336 ~fD~VImnpP~~a~e 350 (437)
.||.||+|||+...+
T Consensus 284 ~fDaIvcDPPYGVRe 298 (421)
T KOG2671|consen 284 KFDAIVCDPPYGVRE 298 (421)
T ss_pred eeeEEEeCCCcchhh
Confidence 799999999997643
No 206
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.00041 Score=70.52 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=57.9
Q ss_pred eEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 266 MTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
+++|+|||+|.+++-+...|. -+.|+|++|.|++..+.|... -.++..|..++...... ...+|.++..|
T Consensus 5 ~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~---~~~~DvligGp 75 (328)
T COG0270 5 KVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALR---KSDVDVLIGGP 75 (328)
T ss_pred eEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhcc---ccCCCEEEeCC
Confidence 689999999999998888886 799999999999999988753 35677888876543221 11689999999
Q ss_pred Cc
Q 045638 345 PN 346 (437)
Q Consensus 345 P~ 346 (437)
|=
T Consensus 76 PC 77 (328)
T COG0270 76 PC 77 (328)
T ss_pred CC
Confidence 93
No 207
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.22 E-value=0.00069 Score=66.07 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=72.7
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
..|.|+|||.|.-+-.++++ ++.++++|.+|++++-++. .+. ++++..+|.+++-+ ....|.++.
T Consensus 32 ~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-----rlp-~~~f~~aDl~~w~p-------~~~~dllfa 98 (257)
T COG4106 32 RRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-----RLP-DATFEEADLRTWKP-------EQPTDLLFA 98 (257)
T ss_pred ceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH-----hCC-CCceecccHhhcCC-------CCccchhhh
Confidence 67999999999999999987 6799999999999988744 334 68999999999853 456899988
Q ss_pred cC-----CcChHHHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 045638 343 NL-----PNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYG 377 (437)
Q Consensus 343 np-----P~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~ 377 (437)
|- |. -.+.+......+.++ |++-|.-
T Consensus 99 NAvlqWlpd-H~~ll~rL~~~L~Pg--------g~LAVQm 129 (257)
T COG4106 99 NAVLQWLPD-HPELLPRLVSQLAPG--------GVLAVQM 129 (257)
T ss_pred hhhhhhccc-cHHHHHHHHHhhCCC--------ceEEEEC
Confidence 84 33 346777888888887 5777654
No 208
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.22 E-value=0.0024 Score=64.92 Aligned_cols=92 Identities=13% Similarity=0.013 Sum_probs=61.9
Q ss_pred cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE-
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV- 341 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI- 341 (437)
+.+|||+|||.|+++..++.+|+ .|+|+|-++..+-..+-=.+.-+.+..+..+. ...+-++. .+.||.|+
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~------~~~FDtVF~ 188 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPN------LGAFDTVFS 188 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccc------cCCcCEEEE
Confidence 48999999999999999999987 89999988876544332222223222233332 33333332 35799876
Q ss_pred EcCCc---ChHHHHHHHHHHhcCC
Q 045638 342 MNLPN---DATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~---~a~eFLdaa~~llk~~ 362 (437)
|+--+ +..+.|..++..++++
T Consensus 189 MGVLYHrr~Pl~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 189 MGVLYHRRSPLDHLKQLKDSLRPG 212 (315)
T ss_pred eeehhccCCHHHHHHHHHHhhCCC
Confidence 55443 5678899999999886
No 209
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.21 E-value=0.00063 Score=68.90 Aligned_cols=95 Identities=20% Similarity=0.217 Sum_probs=68.3
Q ss_pred EEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCC
Q 045638 267 TGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP 345 (437)
Q Consensus 267 VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP 345 (437)
|+|+|||+|.+++-+-+.|. .|.|+|+++.|.+..+.|.. + .++++|..++.... ...+|.++..||
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~-----~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD-----IPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh-----CCCcCEEEecCC
Confidence 68999999999999888887 57899999999999998852 1 34678888875321 235899999999
Q ss_pred c---C----------hH-HHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 346 N---D----------AT-EFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 346 ~---~----------a~-eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
= + .. ..+..+.++++.- -|.+-+.+.++
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~-------~P~~~v~ENV~ 110 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLFFEIVRILKEK-------KPKFFLLENVK 110 (315)
T ss_pred CcccchhcccCCCCCchhhHHHHHHHHHhhc-------CCCEEEeeccH
Confidence 2 1 11 2344455555432 16677888876
No 210
>PHA01634 hypothetical protein
Probab=97.21 E-value=0.00055 Score=61.83 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=72.0
Q ss_pred ccceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 263 FVQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 263 F~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
.+.+|+|+||++|--||..+-+|+ .|+|+|.+|...+.+++|++.|.+-|+..... ++-. .-+.||..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~------~Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNG------EYEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccc------cCCCcceEE
Confidence 469999999999999999999998 89999999999999999999998755443222 2211 124689999
Q ss_pred EcCCcChHHHHHH-HHHHhcCCCCCCCCCccEEEEEeccCC
Q 045638 342 MNLPNDATEFLDA-FRGIYRDRPEDVKFTFPKTHVYGFSKA 381 (437)
Q Consensus 342 mnpP~~a~eFLda-a~~llk~~~~~~~~~~p~IHvY~F~k~ 381 (437)
||--. ..+-|+. .+.-|+.- -|-+|.|++.
T Consensus 98 iDCeG-CE~~l~v~~l~ky~q~---------ci~ihdwt~n 128 (156)
T PHA01634 98 MDCEG-CEEKLNVSMLKKYKQW---------CIGIHDWTKN 128 (156)
T ss_pred EEccc-hHHhcCHHHHHHHHhh---------eeeeehhhhh
Confidence 99765 3333332 22334332 5778888774
No 211
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.19 E-value=0.00061 Score=64.95 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=70.8
Q ss_pred ceEEeecCccchhHHHHhccCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEE--
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK--RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV-- 340 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~--~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V-- 340 (437)
++|||++||.|.+-..+|+.|- ..+++|-++.|++.++.=++.+++++.|++.+.|..+- ... .+.||.|
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~----~~qfdlvlD 142 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFL----SGQFDLVLD 142 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--ccc----ccceeEEee
Confidence 4899999999999999999875 59999999999999999999999998899999998762 111 2345544
Q ss_pred -------EEcC--Cc-ChHHHHHHHHHHhcCC
Q 045638 341 -------VMNL--PN-DATEFLDAFRGIYRDR 362 (437)
Q Consensus 341 -------Imnp--P~-~a~eFLdaa~~llk~~ 362 (437)
-+-| |. ...-+++...++++++
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~ 174 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPG 174 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccCCC
Confidence 3322 21 2246788888888875
No 212
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.14 E-value=0.005 Score=58.08 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=70.8
Q ss_pred ceEEeecCccchhHHHHhccCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK---RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~---~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
--|+.+|.|+|.|+-.+.++|. .++++|.||+-+..|.+- -+.+.+++||+.+.- ..+...++..||.||
T Consensus 50 lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~------~p~~~ii~gda~~l~-~~l~e~~gq~~D~vi 122 (194)
T COG3963 50 LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL------YPGVNIINGDAFDLR-TTLGEHKGQFFDSVI 122 (194)
T ss_pred CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh------CCCccccccchhhHH-HHHhhcCCCeeeeEE
Confidence 4699999999999999999874 799999999999877542 224679999999863 233333578899999
Q ss_pred EcCCcC------hHHHHHHHHHHhcCC
Q 045638 342 MNLPND------ATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~------a~eFLdaa~~llk~~ 362 (437)
..+|-. ..+.|+.+...+..+
T Consensus 123 S~lPll~~P~~~~iaile~~~~rl~~g 149 (194)
T COG3963 123 SGLPLLNFPMHRRIAILESLLYRLPAG 149 (194)
T ss_pred eccccccCcHHHHHHHHHHHHHhcCCC
Confidence 998863 357788877777654
No 213
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.06 E-value=0.0013 Score=63.20 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=73.4
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
..|+|+|+|.|.+++.++++ +.+++..|+ |..++.+++ .++|+++.+|.++-+ +. +|.++|
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~--------P~-~D~~~l 164 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL--------PV-ADVYLL 164 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC--------SS-ESEEEE
T ss_pred cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhh--------cc-ccceee
Confidence 67999999999999999985 569999999 999888887 568999999998432 33 999887
Q ss_pred cC------CcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 045638 343 NL------PNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARD 383 (437)
Q Consensus 343 np------P~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d 383 (437)
.- +..+...|..+...++++ . .+.|.++++.-.++
T Consensus 165 ~~vLh~~~d~~~~~iL~~~~~al~pg-~-----~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 165 RHVLHDWSDEDCVKILRNAAAALKPG-K-----DGRLLIIEMVLPDD 205 (241)
T ss_dssp ESSGGGS-HHHHHHHHHHHHHHSEEC-T-----TEEEEEEEEEECSS
T ss_pred ehhhhhcchHHHHHHHHHHHHHhCCC-C-----CCeEEEEeeccCCC
Confidence 53 235678899999999864 1 15899999885444
No 214
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.01 E-value=0.0029 Score=62.34 Aligned_cols=104 Identities=17% Similarity=0.168 Sum_probs=62.0
Q ss_pred cceEEeecCccchhHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAk--kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
+..|+-+|=+ =..||++|. ..++|+-+|++...++++++.++..+++ |+++..|.++-++..+ .++||.++
T Consensus 45 gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~----~~~fD~f~ 117 (243)
T PF01861_consen 45 GKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL----RGKFDVFF 117 (243)
T ss_dssp T-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT----SS-BSEEE
T ss_pred CCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH----hcCCCEEE
Confidence 3566655522 245555554 4569999999999999999999999996 9999999999876533 47899999
Q ss_pred EcCCcCh---HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 045638 342 MNLPNDA---TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKAR 382 (437)
Q Consensus 342 mnpP~~a---~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~ 382 (437)
.|||++. .-|+.-++.+++.. +-.-++.|++.+
T Consensus 118 TDPPyT~~G~~LFlsRgi~~Lk~~--------g~~gy~~~~~~~ 153 (243)
T PF01861_consen 118 TDPPYTPEGLKLFLSRGIEALKGE--------GCAGYFGFTHKE 153 (243)
T ss_dssp E---SSHHHHHHHHHHHHHTB-ST--------T-EEEEEE-TTT
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCC--------CceEEEEEecCc
Confidence 9999965 46788888888754 223466777654
No 215
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.0069 Score=60.98 Aligned_cols=93 Identities=14% Similarity=0.245 Sum_probs=77.0
Q ss_pred ceEEeecCccchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHHHhhcCCcccE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNK--L-EKKIEVFNMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNk--v-~~~V~vi~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
..||-+|-|-|..+=.+++.. .+++++||||..++++++=...-. . +.+++++-+|+.++++.. ..+||+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-----~~~fDv 152 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-----EEKFDV 152 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-----CCcCCE
Confidence 589999999999999999986 499999999999999987553221 2 368999999999999753 347999
Q ss_pred EEEcCCc--------ChHHHHHHHHHHhcCC
Q 045638 340 VVMNLPN--------DATEFLDAFRGIYRDR 362 (437)
Q Consensus 340 VImnpP~--------~a~eFLdaa~~llk~~ 362 (437)
||+|.-. .+.+|.+...++|+++
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~ 183 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKED 183 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCC
Confidence 9998422 3579999999999986
No 216
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.99 E-value=0.0035 Score=57.59 Aligned_cols=107 Identities=18% Similarity=0.106 Sum_probs=64.9
Q ss_pred ceEEeecCccchhHHHHhccC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHH-----HHHHHHHhhcCCc
Q 045638 265 QMTGDVFAGVGPISIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR-----FIDAMFASQKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg---~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~-----~l~~~~~~~~~~~ 336 (437)
.+|+|+||+.|.|+-.++.++ .+|+|+|++|. .... ++..+++|..+ .+...+. .....
T Consensus 25 ~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~-~~~~i~~d~~~~~~~~~i~~~~~-~~~~~ 91 (181)
T PF01728_consen 25 FTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQ-NVSFIQGDITNPENIKDIRKLLP-ESGEK 91 (181)
T ss_dssp EEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-T-TEEBTTGGGEEEEHSHHGGGSHG-TTTCS
T ss_pred cEEEEcCCcccceeeeeeecccccceEEEEecccc-----------cccc-ceeeeecccchhhHHHhhhhhcc-ccccC
Confidence 689999999999999999987 59999999997 2222 56677777543 2222111 01257
Q ss_pred ccEEEEcC-C----------cC----hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHHH
Q 045638 337 ITQVVMNL-P----------ND----ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIRI 394 (437)
Q Consensus 337 fD~VImnp-P----------~~----a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~~ 394 (437)
+|.|++|. | .. ....+..+...++++ |.+-+=.|..... . ++...+..
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~g--------G~~v~K~~~~~~~-~-~~~~~l~~ 154 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPG--------GTFVIKVFKGPEI-E-ELIYLLKR 154 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTT--------EEEEEEESSSTTS-H-HHHHHHHH
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCC--------CEEEEEeccCccH-H-HHHHHHHh
Confidence 99999997 2 11 124455566677776 5555555553322 2 44444443
No 217
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.98 E-value=0.0075 Score=62.44 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=63.6
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
.+++|+||++|.|+-.++++|++|+|||..|-+ .++.. +.+|+.+.+|+..+.+. ...+|.+++|.
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~p~------~~~vDwvVcDm 278 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFRPP------RKNVDWLVCDM 278 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC-----HhhhC---CCCEEEEeccCcccCCC------CCCCCEEEEec
Confidence 789999999999999999999999999977632 22222 23799999999887531 45799999997
Q ss_pred CcChHHHHHHHHHHhcCC
Q 045638 345 PNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 345 P~~a~eFLdaa~~llk~~ 362 (437)
-.....-..-+...+..+
T Consensus 279 ve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 279 VEKPARVAELMAQWLVNG 296 (357)
T ss_pred ccCHHHHHHHHHHHHhcC
Confidence 665555555555566554
No 218
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.87 E-value=0.0013 Score=55.21 Aligned_cols=97 Identities=11% Similarity=0.017 Sum_probs=42.3
Q ss_pred EeecCccchhHHHHhcc---C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 268 GDVFAGVGPISIPAAKI---V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 268 LDlFAGvG~FaI~aAkk---g--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+++|+..|..++.+++. . .+++++|.++. .+..+++++..++.++++++++|..+++.... ..++|.+++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~----~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP----DGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH----H--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC----CCCEEEEEE
Confidence 46787888888776652 2 27999999997 44555566656777789999999999887653 357999999
Q ss_pred cCCcChH---HHHHHHHHHhcCCCCCCCCCccEEEEEe
Q 045638 343 NLPNDAT---EFLDAFRGIYRDRPEDVKFTFPKTHVYG 377 (437)
Q Consensus 343 npP~~a~---eFLdaa~~llk~~~~~~~~~~p~IHvY~ 377 (437)
|-++... ..+..+...++++ ++|.++.
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~g--------gviv~dD 105 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPG--------GVIVFDD 105 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEE--------EEEEEE-
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC--------eEEEEeC
Confidence 9886443 4455555555554 5777764
No 219
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.87 E-value=0.0014 Score=60.67 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=34.5
Q ss_pred cceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHH
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLER 303 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~ 303 (437)
+++|||.|||+|.-++.|.+.|.+.+++|+||..++.+++
T Consensus 192 gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 192 GDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 4999999999999999999999999999999999998864
No 220
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.84 E-value=0.01 Score=61.86 Aligned_cols=93 Identities=19% Similarity=0.274 Sum_probs=75.9
Q ss_pred ceEEeecCccchhHHHHhccC-C-EEEEEeCCHHHHHHHHHHHH---Hc--CCC-CcEEEEEccHHHHHHHHHHhhcCCc
Q 045638 265 QMTGDVFAGVGPISIPAAKIV-K-RVYANDLNPYAVDYLERNSV---LN--KLE-KKIEVFNMDGRRFIDAMFASQKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg-~-~V~A~DlNP~Ave~L~~Nak---lN--kv~-~~V~vi~gDa~~~l~~~~~~~~~~~ 336 (437)
+.||-+|.|-|--.-.+.|.. . +++-+|++|.+++.+++|.. .| .++ .++++++.|+.+|++.. ...
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-----~~~ 365 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-----ADM 365 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-----ccc
Confidence 789999999998888888864 3 99999999999999997753 33 233 48999999999999863 357
Q ss_pred ccEEEEcCCc---------ChHHHHHHHHHHhcCC
Q 045638 337 ITQVVMNLPN---------DATEFLDAFRGIYRDR 362 (437)
Q Consensus 337 fD~VImnpP~---------~a~eFLdaa~~llk~~ 362 (437)
||.||.|+|. .+.+|...+.+.+++.
T Consensus 366 fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~ 400 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAET 400 (508)
T ss_pred ccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcC
Confidence 9999999986 2468888888888764
No 221
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.84 E-value=0.0022 Score=57.27 Aligned_cols=60 Identities=23% Similarity=0.136 Sum_probs=49.0
Q ss_pred ceEEeecCccchhHHHHhc-----c-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAK-----I-VKRVYANDLNPYAVDYLERNSVLNK--LEKKIEVFNMDGRRF 324 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk-----k-g~~V~A~DlNP~Ave~L~~NaklNk--v~~~V~vi~gDa~~~ 324 (437)
..|+|+|||-|++|..+|. . +.+|+++|.|+..++.+...++..+ +..++.+..++..+.
T Consensus 27 ~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T PF13679_consen 27 ITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE 94 (141)
T ss_pred CEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence 5799999999999999998 4 5699999999999999999888777 444566666655443
No 222
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.75 E-value=0.0015 Score=64.16 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=51.8
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHc---C-C----CCcEEEEEccHHHHHHHHHHhhcCCc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLN---K-L----EKKIEVFNMDGRRFIDAMFASQKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklN---k-v----~~~V~vi~gDa~~~l~~~~~~~~~~~ 336 (437)
.+|||+-||-|.=|+-+|..|++|+++|-||.....++..++.- . + ..+++++++|+.+++.. +..+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~-----~~~s 151 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ-----PDNS 151 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC-----HSS-
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh-----cCCC
Confidence 58999999999999999988999999999999988887654322 1 1 13799999999999861 3578
Q ss_pred ccEEEEcCC
Q 045638 337 ITQVVMNLP 345 (437)
Q Consensus 337 fD~VImnpP 345 (437)
||.|.+||=
T Consensus 152 ~DVVY~DPM 160 (234)
T PF04445_consen 152 FDVVYFDPM 160 (234)
T ss_dssp -SEEEE--S
T ss_pred CCEEEECCC
Confidence 999999983
No 223
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.66 E-value=0.0035 Score=67.15 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=54.4
Q ss_pred eEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH------------HHHhh
Q 045638 266 MTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA------------MFASQ 332 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~------------~~~~~ 332 (437)
+++|+|||+|.+++-+-..|. .|.|+|+|+.|.+..+.|..- .. ...++++|..++... ....
T Consensus 90 ~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~--~p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~- 165 (467)
T PRK10458 90 RFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC--DP-ATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ- 165 (467)
T ss_pred eEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC--CC-ccceeccChhhCccccccccchhhhhhhhhc-
Confidence 699999999999999877776 789999999999999888521 11 234556676654210 0000
Q ss_pred cCCcccEEEEcCCc
Q 045638 333 KAHKITQVVMNLPN 346 (437)
Q Consensus 333 ~~~~fD~VImnpP~ 346 (437)
....+|.++..||=
T Consensus 166 ~~p~~DvL~gGpPC 179 (467)
T PRK10458 166 HIPDHDVLLAGFPC 179 (467)
T ss_pred cCCCCCEEEEcCCC
Confidence 11257999999993
No 224
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.57 E-value=0.013 Score=56.41 Aligned_cols=92 Identities=16% Similarity=0.081 Sum_probs=57.0
Q ss_pred ceEEeecCccchhHHHHhc-cCC-EEEEEeCCHHHHHHHHHHHHH-------cCC-CCcEEEEEccHHHH--HHHHHHhh
Q 045638 265 QMTGDVFAGVGPISIPAAK-IVK-RVYANDLNPYAVDYLERNSVL-------NKL-EKKIEVFNMDGRRF--IDAMFASQ 332 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk-kg~-~V~A~DlNP~Ave~L~~Nakl-------Nkv-~~~V~vi~gDa~~~--l~~~~~~~ 332 (437)
++.+|+|||+|-..+.+|. .++ +++++|++|...+.++.+.+. .+. ...+++.++|..+. ....+
T Consensus 44 dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~--- 120 (205)
T PF08123_consen 44 DVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW--- 120 (205)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG---
T ss_pred CEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh---
Confidence 8999999999999988776 466 699999999999887765543 233 23688899997542 33222
Q ss_pred cCCcccEEEEcCCcChHHHHHHHHHHhcC
Q 045638 333 KAHKITQVVMNLPNDATEFLDAFRGIYRD 361 (437)
Q Consensus 333 ~~~~fD~VImnpP~~a~eFLdaa~~llk~ 361 (437)
...|.|++|---+..+....+...+..
T Consensus 121 --s~AdvVf~Nn~~F~~~l~~~L~~~~~~ 147 (205)
T PF08123_consen 121 --SDADVVFVNNTCFDPDLNLALAELLLE 147 (205)
T ss_dssp --HC-SEEEE--TTT-HHHHHHHHHHHTT
T ss_pred --cCCCEEEEeccccCHHHHHHHHHHHhc
Confidence 247999999766655555555555543
No 225
>PRK11524 putative methyltransferase; Provisional
Probab=96.53 E-value=0.0035 Score=62.42 Aligned_cols=43 Identities=16% Similarity=0.047 Sum_probs=40.5
Q ss_pred cceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHH
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSV 306 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~Nak 306 (437)
+++|||.|||+|.-++.|.+.|.+.+++|++|+.++.+++.+.
T Consensus 209 GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 209 GDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999998875
No 226
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.50 E-value=0.027 Score=53.35 Aligned_cols=90 Identities=18% Similarity=0.110 Sum_probs=74.5
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
..++|+|||-|-=|||+|-. ..+|+.+|.+..=+..++.=++.-+++ |++++++.+.+. . ....||.|++
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~--~-----~~~~fd~v~a 121 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEP--E-----YRESFDVVTA 121 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHT--T-----TTT-EEEEEE
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeeccc--c-----cCCCccEEEe
Confidence 37999999999999988763 358999999999999999999999998 799999999981 1 2568999999
Q ss_pred cCCcChHHHHHHHHHHhcCC
Q 045638 343 NLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 343 npP~~a~eFLdaa~~llk~~ 362 (437)
=--.....++.-+..+++++
T Consensus 122 RAv~~l~~l~~~~~~~l~~~ 141 (184)
T PF02527_consen 122 RAVAPLDKLLELARPLLKPG 141 (184)
T ss_dssp ESSSSHHHHHHHHGGGEEEE
T ss_pred ehhcCHHHHHHHHHHhcCCC
Confidence 87777778888888888875
No 227
>PRK13699 putative methylase; Provisional
Probab=96.49 E-value=0.0043 Score=60.24 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=40.3
Q ss_pred cceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHH
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVL 307 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~Nakl 307 (437)
+++|||.|||+|..++.+.+.|.+.+++|++|+.++.+.+.++.
T Consensus 164 g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 164 NAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999998887754
No 228
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.047 Score=55.08 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=77.1
Q ss_pred cceEEeecCccchhHHHHhccC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg---~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V 340 (437)
+.+||..|.|+|.+|..+|+.- .+++..|....-++-+.+-.+.-++.++++++.-|+..--- .. +...+|.|
T Consensus 106 GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF-~~---ks~~aDaV 181 (314)
T KOG2915|consen 106 GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF-LI---KSLKADAV 181 (314)
T ss_pred CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc-cc---cccccceE
Confidence 4899999999999999999963 48999999999999999999999999999999888754210 00 13579999
Q ss_pred EEcCCcChHHHHHHHHHHhcCC
Q 045638 341 VMNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 341 ImnpP~~a~eFLdaa~~llk~~ 362 (437)
++|+|. ..+.++.+..+++.+
T Consensus 182 FLDlPa-Pw~AiPha~~~lk~~ 202 (314)
T KOG2915|consen 182 FLDLPA-PWEAIPHAAKILKDE 202 (314)
T ss_pred EEcCCC-hhhhhhhhHHHhhhc
Confidence 999998 556677777788875
No 229
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.28 E-value=0.029 Score=57.15 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=63.8
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+++|+-+|-|.-|..++++ .++|+|+|.+|.|++.++++.+.. .+++++++++-.++...+. ......+|-|++
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~-~~~~~~vDgIl~ 98 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLD-ELLVTKIDGILV 98 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHH-hcCCCcccEEEE
Confidence 58999999999999999985 369999999999999999987643 4589999999888754432 112346899998
Q ss_pred cCCcCh
Q 045638 343 NLPNDA 348 (437)
Q Consensus 343 npP~~a 348 (437)
|+=-++
T Consensus 99 DLGvSS 104 (305)
T TIGR00006 99 DLGVSS 104 (305)
T ss_pred eccCCH
Confidence 875444
No 230
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.28 E-value=0.0056 Score=64.98 Aligned_cols=54 Identities=26% Similarity=0.241 Sum_probs=51.1
Q ss_pred eEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 045638 266 MTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM 319 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~g 319 (437)
.|||+++|+|.+++.|++.|+ .|+|+|.-..+.+++++=...|+.+++|++|+.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 499999999999999999988 999999999999999999999999999988874
No 231
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.19 E-value=0.0062 Score=60.25 Aligned_cols=94 Identities=19% Similarity=0.341 Sum_probs=67.7
Q ss_pred ceEEeecCccchhHHHHhcc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk----g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V 340 (437)
++++.+|||+|.-..|+.+- +-+|+|+|-+|.|++.++.|...+- .++..+..|...-- +...-..+++|.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~--~~~~~~~~svD~i 148 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPS--LKEPPEEGSVDII 148 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchh--ccCCCCcCccceE
Confidence 47999999999999999983 2489999999999999999988765 25666666654321 1111124578877
Q ss_pred EEcC------CcChHHHHHHHHHHhcCC
Q 045638 341 VMNL------PNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 341 Imnp------P~~a~eFLdaa~~llk~~ 362 (437)
+|=. |......++...++++++
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCC
Confidence 6653 333346688888899987
No 232
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.18 E-value=0.0097 Score=58.06 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=68.3
Q ss_pred ceEEeecCccchhHHHHhccC-C-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEE-E
Q 045638 265 QMTGDVFAGVGPISIPAAKIV-K-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV-V 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg-~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V-I 341 (437)
..++|+||=-|++++.+.+.+ + .++|.|+||-.++.+.+|++.|++.+++++.++|+...+.. ...+|.+ |
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~------~d~~d~ivI 91 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL------EDEIDVIVI 91 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc------cCCcCEEEE
Confidence 458999999999999999975 3 89999999999999999999999999999999999776641 2345654 3
Q ss_pred EcCCcCh-HHHHHHHHHHhc
Q 045638 342 MNLPNDA-TEFLDAFRGIYR 360 (437)
Q Consensus 342 mnpP~~a-~eFLdaa~~llk 360 (437)
.+.=... .++|++...-+.
T Consensus 92 AGMGG~lI~~ILee~~~~l~ 111 (226)
T COG2384 92 AGMGGTLIREILEEGKEKLK 111 (226)
T ss_pred eCCcHHHHHHHHHHhhhhhc
Confidence 3333321 355555444443
No 233
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.14 E-value=0.023 Score=51.78 Aligned_cols=80 Identities=15% Similarity=0.188 Sum_probs=60.8
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCC----cChHHHHHHHHHHhcCC
Q 045638 289 YANDLNPYAVDYLERNSVLNK--LEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLP----NDATEFLDAFRGIYRDR 362 (437)
Q Consensus 289 ~A~DlNP~Ave~L~~NaklNk--v~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP----~~a~eFLdaa~~llk~~ 362 (437)
.|+|+++.+++.++++.+..+ ..++++++++|+.+.. + ...+||.|++..- ....+++.++.++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp---~---~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP---F---DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC---C---CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence 379999999999987765432 2237999999998752 1 2467999988742 13568899999999997
Q ss_pred CCCCCCCccEEEEEeccCCC
Q 045638 363 PEDVKFTFPKTHVYGFSKAR 382 (437)
Q Consensus 363 ~~~~~~~~p~IHvY~F~k~~ 382 (437)
|.+.+.+|.+.+
T Consensus 75 --------G~l~i~d~~~~~ 86 (160)
T PLN02232 75 --------SRVSILDFNKSN 86 (160)
T ss_pred --------eEEEEEECCCCC
Confidence 789999998643
No 234
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.10 E-value=0.034 Score=54.13 Aligned_cols=124 Identities=10% Similarity=0.070 Sum_probs=75.0
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
-+|.|+|||-+.+|-.. +.+.+|++.|+.+. | +. ++.+|...... .+.++|.+|.-+
T Consensus 74 ~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n---~~--Vtacdia~vPL------~~~svDv~VfcL 130 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------N---PR--VTACDIANVPL------EDESVDVAVFCL 130 (219)
T ss_dssp S-EEEES-TT-HHHHH---S---EEEEESS-S-----------S---TT--EEES-TTS-S--------TT-EEEEEEES
T ss_pred EEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------C---CC--EEEecCccCcC------CCCceeEEEEEh
Confidence 68999999999998432 34568999999752 2 13 45677766542 257899999888
Q ss_pred CcC---hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHHHHHHhcccceeEEEeEEecCCCcEEEEE
Q 045638 345 PND---ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIRIALAEVAVNVEMRRVRLVAPGKWMLFAS 421 (437)
Q Consensus 345 P~~---a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~~~L~~~~~~v~vr~VR~VAP~k~m~cis 421 (437)
--. -.+|+.++.++|+.+ |.+.+.+..-.-+ + +...+ +....+++..+..-..++..+-.+
T Consensus 131 SLMGTn~~~fi~EA~RvLK~~--------G~L~IAEV~SRf~---~----~~~F~-~~~~~~GF~~~~~d~~n~~F~~f~ 194 (219)
T PF05148_consen 131 SLMGTNWPDFIREANRVLKPG--------GILKIAEVKSRFE---N----VKQFI-KALKKLGFKLKSKDESNKHFVLFE 194 (219)
T ss_dssp ---SS-HHHHHHHHHHHEEEE--------EEEEEEEEGGG-S--------HHHHH-HHHHCTTEEEEEEE--STTEEEEE
T ss_pred hhhCCCcHHHHHHHHheeccC--------cEEEEEEecccCc---C----HHHHH-HHHHHCCCeEEecccCCCeEEEEE
Confidence 763 369999999999987 7999998754322 1 11111 112345677777778899999999
Q ss_pred EEEccc
Q 045638 422 FVLPES 427 (437)
Q Consensus 422 FrLp~~ 427 (437)
|+....
T Consensus 195 F~K~~~ 200 (219)
T PF05148_consen 195 FKKIRK 200 (219)
T ss_dssp EEE-SS
T ss_pred EEEcCc
Confidence 998763
No 235
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.08 E-value=0.0046 Score=66.50 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=63.2
Q ss_pred ceEEeecCccchhHHHHhcc----C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCccc
Q 045638 265 QMTGDVFAGVGPISIPAAKI----V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 338 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk----g--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD 338 (437)
.+|+|..||+|.|-+.+++. . ...++.|+|+..+..++-|+-++++...+....+|...-... ........||
T Consensus 188 ~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~-~~~~~~~~~D 266 (489)
T COG0286 188 NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKH-DDKDDKGKFD 266 (489)
T ss_pred CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcc-cccCCcccee
Confidence 68999999999999988873 1 579999999999999999999999974455666665432211 0001235699
Q ss_pred EEEEcCCcChH
Q 045638 339 QVVMNLPNDAT 349 (437)
Q Consensus 339 ~VImnpP~~a~ 349 (437)
.|++|||.+..
T Consensus 267 ~viaNPPf~~~ 277 (489)
T COG0286 267 FVIANPPFSGK 277 (489)
T ss_pred EEEeCCCCCcc
Confidence 99999999643
No 236
>PRK00536 speE spermidine synthase; Provisional
Probab=95.90 E-value=0.18 Score=50.33 Aligned_cols=88 Identities=8% Similarity=-0.094 Sum_probs=66.8
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHH--cCCC-CcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVL--NKLE-KKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~Nakl--Nkv~-~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++||-+|.|-|.-+-.++|...+|+.+||++..++.+++-.-. ..++ .+++++. +..+ ...++||+||
T Consensus 74 k~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~----~~~~~fDVII 144 (262)
T PRK00536 74 KEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLD----LDIKKYDLII 144 (262)
T ss_pred CeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhh----ccCCcCCEEE
Confidence 5789999999999999999867999999999999999882211 1233 3788775 1221 1235799999
Q ss_pred EcCCcChHHHHHHHHHHhcCC
Q 045638 342 MNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~ 362 (437)
+|... ..+|.....++|+++
T Consensus 145 vDs~~-~~~fy~~~~~~L~~~ 164 (262)
T PRK00536 145 CLQEP-DIHKIDGLKRMLKED 164 (262)
T ss_pred EcCCC-ChHHHHHHHHhcCCC
Confidence 99443 378999999999986
No 237
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=95.76 E-value=0.021 Score=56.52 Aligned_cols=103 Identities=13% Similarity=0.152 Sum_probs=68.8
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
...+|+|||+|--++.+|..-..|+|+|+|+.+++.+++--...-..-..+....|..+++. ..+++|.|+.-=
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g------~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG------GEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC------CCcceeeehhhh
Confidence 47999999999666667766669999999999999877533222111123344444444431 246788887542
Q ss_pred Cc---ChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 345 PN---DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 345 P~---~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
-. .-..|...+.++|++. | ++|-+++...
T Consensus 109 a~HWFdle~fy~~~~rvLRk~--G-----g~iavW~Y~d 140 (261)
T KOG3010|consen 109 AVHWFDLERFYKEAYRVLRKD--G-----GLIAVWNYND 140 (261)
T ss_pred hHHhhchHHHHHHHHHHcCCC--C-----CEEEEEEccC
Confidence 11 2358899999999985 2 4777777764
No 238
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.65 E-value=0.22 Score=48.46 Aligned_cols=104 Identities=16% Similarity=0.094 Sum_probs=83.1
Q ss_pred cceEEeecCccchhHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCc-ccEE
Q 045638 264 VQMTGDVFAGVGPISIPAAK--IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHK-ITQV 340 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAk--kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~-fD~V 340 (437)
..+++|+|||.|-=|||+|- ...+|+-+|.+..=+..|+.=++.-+++ |++++++.+.++-.+ .. ||.|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-------~~~~D~v 139 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-------KKQYDVV 139 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-------cccCcEE
Confidence 47999999999999999773 3447999999999999999999999998 799999999998532 23 9998
Q ss_pred EEcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCC
Q 045638 341 VMNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARD 383 (437)
Q Consensus 341 ImnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d 383 (437)
..=--.+......-...+++.+ |.+-.|-+.+..+
T Consensus 140 tsRAva~L~~l~e~~~pllk~~--------g~~~~~k~~~~~~ 174 (215)
T COG0357 140 TSRAVASLNVLLELCLPLLKVG--------GGFLAYKGLAGKD 174 (215)
T ss_pred EeehccchHHHHHHHHHhcccC--------CcchhhhHHhhhh
Confidence 8776666666777777777775 4666666666543
No 239
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.026 Score=54.95 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=68.8
Q ss_pred ceEEeecCccchhHHHHhcc----CCEEEEEeCCHHHHHHHHHHHHHcC--------CC-CcEEEEEccHHHHHHHHHHh
Q 045638 265 QMTGDVFAGVGPISIPAAKI----VKRVYANDLNPYAVDYLERNSVLNK--------LE-KKIEVFNMDGRRFIDAMFAS 331 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk----g~~V~A~DlNP~Ave~L~~NaklNk--------v~-~~V~vi~gDa~~~l~~~~~~ 331 (437)
-..||+|+|+|+++-.+|+. |..+.++|.-|+-+++.++|+..-- ++ .++.+..||++.-...
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e---- 159 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE---- 159 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc----
Confidence 46899999999999998863 3345999999999999999997543 11 3677888999876432
Q ss_pred hcCCcccEEEEcCCcChHHHHHHHHHHhcCC
Q 045638 332 QKAHKITQVVMNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 332 ~~~~~fD~VImnpP~~a~eFLdaa~~llk~~ 362 (437)
...||+|.+. +.+.+......+.|+++
T Consensus 160 --~a~YDaIhvG--Aaa~~~pq~l~dqL~~g 186 (237)
T KOG1661|consen 160 --QAPYDAIHVG--AAASELPQELLDQLKPG 186 (237)
T ss_pred --cCCcceEEEc--cCccccHHHHHHhhccC
Confidence 4579999998 54556666777777775
No 240
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.56 E-value=0.027 Score=57.95 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=65.4
Q ss_pred ceEEeecCccchhHHHHhccC-CEEEEEeCCHHHHHHHHHHHHH---------cCCCCcEEEEEccHHHH-HHHHHHhhc
Q 045638 265 QMTGDVFAGVGPISIPAAKIV-KRVYANDLNPYAVDYLERNSVL---------NKLEKKIEVFNMDGRRF-IDAMFASQK 333 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg-~~V~A~DlNP~Ave~L~~Nakl---------Nkv~~~V~vi~gDa~~~-l~~~~~~~~ 333 (437)
..||||+||-|.=-.=..+.+ ..++++|+++.+++.+++-.+. .+..-...++.+|+... +...+.. .
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~-~ 142 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP-R 142 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS-T
T ss_pred CeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc-c
Confidence 789999999999777666655 4999999999999999998822 11112467889998742 2211110 1
Q ss_pred CCcccEEEEcCCc--------ChHHHHHHHHHHhcCC
Q 045638 334 AHKITQVVMNLPN--------DATEFLDAFRGIYRDR 362 (437)
Q Consensus 334 ~~~fD~VImnpP~--------~a~eFLdaa~~llk~~ 362 (437)
...||.|-+-.=- .+..||..+...|++|
T Consensus 143 ~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 143 SRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp TS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred CCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 2479998877531 3568999999999986
No 241
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.03 E-value=0.078 Score=48.42 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=53.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC---Cc----------ChHHHHH
Q 045638 287 RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL---PN----------DATEFLD 353 (437)
Q Consensus 287 ~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp---P~----------~a~eFLd 353 (437)
+|||.||.++|++..++..+.+++.+++++++..=.. +..... .+.+|.++.|+ |. ++...++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~-l~~~i~---~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN-LDEYIP---EGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG-GGGT-----S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH-HHhhCc---cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 6999999999999999999999998889999865443 333221 23799999994 54 3468899
Q ss_pred HHHHHhcCC
Q 045638 354 AFRGIYRDR 362 (437)
Q Consensus 354 aa~~llk~~ 362 (437)
.++.+++++
T Consensus 77 ~al~lL~~g 85 (140)
T PF06962_consen 77 AALELLKPG 85 (140)
T ss_dssp HHHHHEEEE
T ss_pred HHHHhhccC
Confidence 999999986
No 242
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.98 E-value=0.12 Score=50.42 Aligned_cols=103 Identities=14% Similarity=0.060 Sum_probs=72.1
Q ss_pred ceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.++||+|||||-.+-.++..-+ +|-.+|.++.-++-+++.+..++- ....+++.-..+|.+. ..+||.|-+.
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~-~v~~~~~~gLQ~f~P~------~~~YDlIW~Q 129 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP-RVGEFYCVGLQDFTPE------EGKYDLIWIQ 129 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC-CEEEEEES-GGG----------TT-EEEEEEE
T ss_pred ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC-CcceEEecCHhhccCC------CCcEeEEEeh
Confidence 6899999999999987776655 999999999999999876654222 2468899888888653 3589998765
Q ss_pred -----CCc-ChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 045638 344 -----LPN-DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKAR 382 (437)
Q Consensus 344 -----pP~-~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~ 382 (437)
+.. ...+||......++++ |+|.+=+.....
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~--------G~IvvKEN~~~~ 166 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPN--------GVIVVKENVSSS 166 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEE--------EEEEEEEEEESS
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCC--------cEEEEEecCCCC
Confidence 222 2368888888888876 799988876543
No 243
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.95 E-value=0.087 Score=52.40 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=50.4
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+|+|++||--||++|.... ++.++|.|||+.+++.+..=...-++. .++...|...-. +....|+.++
T Consensus 107 ~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~-------~~~~~DlaLl 177 (251)
T PF07091_consen 107 DSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP-------PKEPADLALL 177 (251)
T ss_dssp SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH-------TTSEESEEEE
T ss_pred chhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC-------CCCCcchhhH
Confidence 89999999999999998876 359999999999999999988888876 444445554332 2345676544
No 244
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=94.88 E-value=0.028 Score=55.89 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=41.3
Q ss_pred cccceEEeecCccchhHHHHhcc-CC-EEEEEeCCHHHHHHHHHHHHH
Q 045638 262 FFVQMTGDVFAGVGPISIPAAKI-VK-RVYANDLNPYAVDYLERNSVL 307 (437)
Q Consensus 262 FF~e~VLDlFAGvG~FaI~aAkk-g~-~V~A~DlNP~Ave~L~~Nakl 307 (437)
|....+||+||-.|.+++.+|+. |+ .|+++||+|.-++.+++|++.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 34578999999999999999996 66 899999999999999999863
No 245
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=94.74 E-value=0.028 Score=54.04 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=29.4
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLE 302 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~ 302 (437)
.+++|+|||.|..++.++..+..|++||+|+..+...+
T Consensus 22 ~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 22 KTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred CEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence 57999999999999988777889999999999886655
No 246
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.74 E-value=0.053 Score=53.62 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=63.8
Q ss_pred cceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHHHhhcCCcccEEE
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFN-MDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~-gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
+.+|||+||-+|.|+-.+..+|+ +|||+|..-.-+.+=-+| +.++..+. .+++.+.+..+ .+..|.++
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~~~----~~~~d~~v 149 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPEDF----TEKPDLIV 149 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHHHc----ccCCCeEE
Confidence 48999999999999999999987 999999875444432221 22454444 45665544333 34679999
Q ss_pred EcCCc-ChHHHHHHHHHHhcCC
Q 045638 342 MNLPN-DATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~-~a~eFLdaa~~llk~~ 362 (437)
+|.-. +....|+.+..+++++
T Consensus 150 ~DvSFISL~~iLp~l~~l~~~~ 171 (245)
T COG1189 150 IDVSFISLKLILPALLLLLKDG 171 (245)
T ss_pred EEeehhhHHHHHHHHHHhcCCC
Confidence 99887 4457788888888775
No 247
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.55 E-value=0.19 Score=48.71 Aligned_cols=98 Identities=14% Similarity=0.112 Sum_probs=62.8
Q ss_pred ceEEeecCccchhHHHHhccCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHHHhhcCCcccE
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK---RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR--FIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~---~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~--~l~~~~~~~~~~~fD~ 339 (437)
.+|+|+||-.|..+-.++++.. .|+|+|+.|-.. +. +|.++++|..+ ....+...-....+|.
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~-~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv 114 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IP-GVIFLQGDITDEDTLEKLLEALGGAPVDV 114 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CC-CceEEeeeccCccHHHHHHHHcCCCCcce
Confidence 8999999999999999999632 599999999543 23 58888888653 2222211112334799
Q ss_pred EEEcC--CcCh-------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 045638 340 VVMNL--PNDA-------------TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKAR 382 (437)
Q Consensus 340 VImnp--P~~a-------------~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~ 382 (437)
|+.|+ ..+. ...++-+...++++ |..-+=.|..++
T Consensus 115 V~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~--------G~fv~K~fqg~~ 164 (205)
T COG0293 115 VLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPG--------GSFVAKVFQGED 164 (205)
T ss_pred EEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCC--------CeEEEEEEeCCC
Confidence 99654 3221 12244455556654 566777776543
No 248
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=94.42 E-value=0.04 Score=54.21 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=60.1
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE---
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV--- 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI--- 341 (437)
..|||++||+|.-+-.+...|...+++|++|.+++.+.+ -+. + -.++.+|.-+-++. .+++||-+|
T Consensus 52 ~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-~e~---e--gdlil~DMG~Glpf-----rpGtFDg~ISIS 120 (270)
T KOG1541|consen 52 GLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-REL---E--GDLILCDMGEGLPF-----RPGTFDGVISIS 120 (270)
T ss_pred cEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-hhh---h--cCeeeeecCCCCCC-----CCCccceEEEee
Confidence 359999999999988888889899999999999999987 221 1 13556665544431 357888665
Q ss_pred -----EcC------Cc-ChHHHHHHHHHHhcCC
Q 045638 342 -----MNL------PN-DATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 -----mnp------P~-~a~eFLdaa~~llk~~ 362 (437)
+|- |. ....|...+-.+++++
T Consensus 121 AvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg 153 (270)
T KOG1541|consen 121 AVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRG 153 (270)
T ss_pred eeeeecccCccccChHHHHHHHhhhhhhhhccC
Confidence 221 22 2246677777777765
No 249
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.27 E-value=0.031 Score=51.99 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=53.6
Q ss_pred ceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF 324 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~ 324 (437)
...+|+++|-|-+-+.+|+.|. ...++|+||+.+.|.+-.+-+.++.....+...|...+
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 6899999999999999999985 89999999999999999999899987777777777655
No 250
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.00 E-value=0.24 Score=50.50 Aligned_cols=95 Identities=16% Similarity=0.061 Sum_probs=69.2
Q ss_pred ceEEeecCccchhHHHHhcc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk----g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V 340 (437)
-.|+|+-||.|-.-+-+... ...|.-+|.+|..++.-++-++.+|+++-+++.++||++.-. +.. -...++.+
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~-l~~--l~p~P~l~ 213 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS-LAA--LDPAPTLA 213 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH-hhc--cCCCCCEE
Confidence 46999999999999887764 248999999999999999999999999767999999998632 211 12345665
Q ss_pred EE-cCC----cC--hHHHHHHHHHHhcCC
Q 045638 341 VM-NLP----ND--ATEFLDAFRGIYRDR 362 (437)
Q Consensus 341 Im-npP----~~--a~eFLdaa~~llk~~ 362 (437)
|+ .+- .. ....+..+..++.++
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pg 242 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPG 242 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence 44 332 21 123456666666664
No 251
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.98 E-value=0.15 Score=52.16 Aligned_cols=85 Identities=12% Similarity=0.088 Sum_probs=59.2
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
.+++|+--|-|.-|-.++++ +++|+|+|.+|+|++.++++++.. .+++.+++++-.++...+........+|-|++
T Consensus 22 g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 22 GIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp -EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-EEEEEE
T ss_pred ceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCccCEEEE
Confidence 67999999999999999975 479999999999999998766533 56899999987776543322112457999999
Q ss_pred cCCcChHHH
Q 045638 343 NLPNDATEF 351 (437)
Q Consensus 343 npP~~a~eF 351 (437)
|+=-++.++
T Consensus 100 DLGvSS~Ql 108 (310)
T PF01795_consen 100 DLGVSSMQL 108 (310)
T ss_dssp E-S--HHHH
T ss_pred ccccCHHHh
Confidence 987766443
No 252
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=93.88 E-value=0.051 Score=61.16 Aligned_cols=45 Identities=31% Similarity=0.296 Sum_probs=41.4
Q ss_pred cceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHc
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLN 308 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklN 308 (437)
+..++|.|||-|.+.+.+++.|+.|+|+|+||.|+-.|+.-++.-
T Consensus 91 ~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlEyP 135 (875)
T COG1743 91 GPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLEYP 135 (875)
T ss_pred CCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHhcc
Confidence 488999999999999999999999999999999999998877643
No 253
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.74 E-value=0.049 Score=59.17 Aligned_cols=91 Identities=20% Similarity=0.268 Sum_probs=68.7
Q ss_pred ceEEeecCccchhHHHHhc------cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCccc
Q 045638 265 QMTGDVFAGVGPISIPAAK------IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT 338 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk------kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD 338 (437)
.+|+-+|||-||++-...+ +..++||+|.||.|+-.|+. .+.-..+++|+++.+|.+++-. +...+|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~a------p~eq~D 441 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNA------PREQAD 441 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCC------chhhcc
Confidence 4688899999999765444 23489999999999988875 5555677899999999999852 124578
Q ss_pred EEEEcCCc------ChHHHHHHHHHHhcCC
Q 045638 339 QVVMNLPN------DATEFLDAFRGIYRDR 362 (437)
Q Consensus 339 ~VImnpP~------~a~eFLdaa~~llk~~ 362 (437)
.+|.-+-. .+.|=||.+-+.+++.
T Consensus 442 I~VSELLGSFGDNELSPECLDG~q~fLkpd 471 (649)
T KOG0822|consen 442 IIVSELLGSFGDNELSPECLDGAQKFLKPD 471 (649)
T ss_pred chHHHhhccccCccCCHHHHHHHHhhcCCC
Confidence 77766554 3567788888887764
No 254
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=93.57 E-value=0.24 Score=51.21 Aligned_cols=97 Identities=11% Similarity=-0.007 Sum_probs=70.2
Q ss_pred ceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcC--CC---CcEEEEEccHHHHH-HHHHHhhcCCcc
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNK--LE---KKIEVFNMDGRRFI-DAMFASQKAHKI 337 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNk--v~---~~V~vi~gDa~~~l-~~~~~~~~~~~f 337 (437)
+.|+||+||-|.=.+-.-+.|. .++++||...+++.++...+.-+ .. =.+.++.+|+.... ...+. .++.+|
T Consensus 119 ~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e-~~dp~f 197 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE-FKDPRF 197 (389)
T ss_pred cccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc-CCCCCc
Confidence 8899999999999998888776 89999999999999988665221 11 13789999987643 22221 123448
Q ss_pred cEEEEcCC--------cChHHHHHHHHHHhcCC
Q 045638 338 TQVVMNLP--------NDATEFLDAFRGIYRDR 362 (437)
Q Consensus 338 D~VImnpP--------~~a~eFLdaa~~llk~~ 362 (437)
|.|-+-.- ..+.-+|..+.++|++|
T Consensus 198 DivScQF~~HYaFetee~ar~~l~Nva~~LkpG 230 (389)
T KOG1975|consen 198 DIVSCQFAFHYAFETEESARIALRNVAKCLKPG 230 (389)
T ss_pred ceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence 87765433 14567788888899886
No 255
>PRK11524 putative methyltransferase; Provisional
Probab=93.33 E-value=0.18 Score=50.31 Aligned_cols=46 Identities=9% Similarity=0.258 Sum_probs=36.3
Q ss_pred cEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcCh--------------------HHHHHHHHHHhcCC
Q 045638 313 KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA--------------------TEFLDAFRGIYRDR 362 (437)
Q Consensus 313 ~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a--------------------~eFLdaa~~llk~~ 362 (437)
+.+++++|+.+++..+ +..++|.|++|||+.. .+++.++.++++++
T Consensus 8 ~~~i~~gD~~~~l~~l----~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~ 73 (284)
T PRK11524 8 AKTIIHGDALTELKKI----PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQ 73 (284)
T ss_pred CCEEEeccHHHHHHhc----ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence 4678999999998654 2568999999999742 25678888888876
No 256
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=93.33 E-value=1.2 Score=43.91 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=67.1
Q ss_pred ceEEeecCccchhHHHHhcc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
..||-+||.+|...-..+-- | ..|||+|.+|++...|..=++. ..||-++-+||+.--.... --+.+|.|+
T Consensus 75 skVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DAr~P~~Y~~---lv~~VDvI~ 148 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDARHPEKYRM---LVEMVDVIF 148 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-TTSGGGGTT---TS--EEEEE
T ss_pred CEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccCCChHHhhc---ccccccEEE
Confidence 68999999999999888874 2 3999999999999988854443 2389999999986422100 134689999
Q ss_pred EcC--CcChHHHHHHHHHHhcCC
Q 045638 342 MNL--PNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnp--P~~a~eFLdaa~~llk~~ 362 (437)
.|- |..+.-++..+...++++
T Consensus 149 ~DVaQp~Qa~I~~~Na~~fLk~g 171 (229)
T PF01269_consen 149 QDVAQPDQARIAALNARHFLKPG 171 (229)
T ss_dssp EE-SSTTHHHHHHHHHHHHEEEE
T ss_pred ecCCChHHHHHHHHHHHhhccCC
Confidence 995 556677888888888886
No 257
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=93.30 E-value=0.16 Score=51.60 Aligned_cols=94 Identities=18% Similarity=0.126 Sum_probs=74.1
Q ss_pred ccceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEE
Q 045638 263 FVQMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 263 F~e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V 340 (437)
++..|+-|| ---.+||++|-- ..+|..+|++...++..++=++.-++. |++.+.-|.++-+++.+ ..+||.+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~----~~kFDvf 225 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL----KRKFDVF 225 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH----HhhCCee
Confidence 446677666 556777877764 458999999999999999999999997 79999999998877655 3579999
Q ss_pred EEcCCcCh---HHHHHHHHHHhcCC
Q 045638 341 VMNLPNDA---TEFLDAFRGIYRDR 362 (437)
Q Consensus 341 ImnpP~~a---~eFLdaa~~llk~~ 362 (437)
+.|||.+. ..|+...+..++..
T Consensus 226 iTDPpeTi~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 226 ITDPPETIKALKLFLGRGIATLKGE 250 (354)
T ss_pred ecCchhhHHHHHHHHhccHHHhcCC
Confidence 99999954 35666666666654
No 258
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=93.11 E-value=0.41 Score=50.08 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=57.4
Q ss_pred cceEEeecCccchhHHHHhccCC------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHh---hcC
Q 045638 264 VQMTGDVFAGVGPISIPAAKIVK------RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS---QKA 334 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~aAkkg~------~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~---~~~ 334 (437)
++.||||||-.|.=++.+....+ .|+|||.++.=...|..-++.-.- .++.+.+.|+..+-.....+ ...
T Consensus 156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~~~~~~ 234 (375)
T KOG2198|consen 156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDGNDKEQ 234 (375)
T ss_pred CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccCchhhh
Confidence 38999999999988866555322 899999999999999887743322 25777777776553322100 013
Q ss_pred CcccEEEEcCCc
Q 045638 335 HKITQVVMNLPN 346 (437)
Q Consensus 335 ~~fD~VImnpP~ 346 (437)
..||+|++|-|=
T Consensus 235 ~~fDrVLvDVPC 246 (375)
T KOG2198|consen 235 LKFDRVLVDVPC 246 (375)
T ss_pred hhcceeEEeccc
Confidence 469999999984
No 259
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=93.06 E-value=1.3 Score=34.94 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=56.4
Q ss_pred EEeecCccchhH--HHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHHHhhcC-CcccEEEE
Q 045638 267 TGDVFAGVGPIS--IPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF-IDAMFASQKA-HKITQVVM 342 (437)
Q Consensus 267 VLDlFAGvG~Fa--I~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~-l~~~~~~~~~-~~fD~VIm 342 (437)
++|++||+|..+ ......+..++++|.++.++............. .+.++.+|.... +. + .. ..+|.+.+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~---~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLP--F---EDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCC--C---CCCCceeEEee
Confidence 999999999965 222223358999999999999844444321111 167777777652 21 1 11 36888744
Q ss_pred cCCcC---hHHHHHHHHHHhcCC
Q 045638 343 NLPND---ATEFLDAFRGIYRDR 362 (437)
Q Consensus 343 npP~~---a~eFLdaa~~llk~~ 362 (437)
..... ....+..+.+.++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~ 148 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPG 148 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCC
Confidence 44321 367778888888764
No 260
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=92.85 E-value=0.11 Score=55.90 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=56.7
Q ss_pred ceEEeecCccchhHHHHhcc---C---CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHHHhhcCCcc
Q 045638 265 QMTGDVFAGVGPISIPAAKI---V---KRVYANDLNPYAVDYLERNSVLNKLEK-KIEVFNMDGRRFIDAMFASQKAHKI 337 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk---g---~~V~A~DlNP~Ave~L~~NaklNkv~~-~V~vi~gDa~~~l~~~~~~~~~~~f 337 (437)
..|.|++||+|.|-+.+.+. | ..+++.|.++.++...+.|+.++++.. .....++|...-. ... ....|
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~-d~~---~~~~~ 294 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTK-EWE---NENGF 294 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCc-ccc---ccccC
Confidence 67999999999998876541 2 369999999999999999998887742 3333345433210 000 12459
Q ss_pred cEEEEcCCcCh
Q 045638 338 TQVVMNLPNDA 348 (437)
Q Consensus 338 D~VImnpP~~a 348 (437)
|.|++|||.+.
T Consensus 295 D~v~~NpPf~~ 305 (501)
T TIGR00497 295 EVVVSNPPYSI 305 (501)
T ss_pred CEEeecCCccc
Confidence 99999999853
No 261
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.81 E-value=0.15 Score=50.05 Aligned_cols=44 Identities=25% Similarity=0.261 Sum_probs=33.7
Q ss_pred ceEEeecCccchhHHHHhc-c-C--CEEEEEeCCHHHHHHHHHHHHHc
Q 045638 265 QMTGDVFAGVGPISIPAAK-I-V--KRVYANDLNPYAVDYLERNSVLN 308 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk-k-g--~~V~A~DlNP~Ave~L~~NaklN 308 (437)
-++.|.|||.|++--.++- + . ..|+|-|+|+++++++++|..+-
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 5799999999998655443 2 2 38999999999999999998654
No 262
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=92.71 E-value=0.16 Score=44.76 Aligned_cols=50 Identities=32% Similarity=0.336 Sum_probs=32.6
Q ss_pred eecCccc--hhHHHHh--c--cCCEEEEEeCCHHHHHHHHHH--HHHcCCCCcEEEEE
Q 045638 269 DVFAGVG--PISIPAA--K--IVKRVYANDLNPYAVDYLERN--SVLNKLEKKIEVFN 318 (437)
Q Consensus 269 DlFAGvG--~FaI~aA--k--kg~~V~A~DlNP~Ave~L~~N--aklNkv~~~V~vi~ 318 (437)
|+||++| ...+..+ + .+.+|+|+|-||..++.++.| +.+|...+.++++.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~ 58 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHP 58 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEE
Confidence 8999999 5555443 2 246899999999999999999 88886543344443
No 263
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.21 E-value=0.85 Score=46.06 Aligned_cols=92 Identities=17% Similarity=0.118 Sum_probs=55.7
Q ss_pred ceEEeecCccchhHHH-Hhcc---CCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEccHHHHHHHHHHhhcCCcccE
Q 045638 265 QMTGDVFAGVGPISIP-AAKI---VKRVYANDLNPYAVDYLERNSV-LNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~-aAkk---g~~V~A~DlNP~Ave~L~~Nak-lNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
.+|+=+|||.=|++.- +|++ ++.|.++|++|+|++.+++=++ ..++..+++++++|+.+....+ ..||+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl------~~~Dv 195 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL------KEYDV 195 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------SE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc------ccCCE
Confidence 3788888877777654 4443 4589999999999999988666 5677778999999998764322 35898
Q ss_pred EEEcC-Cc----ChHHHHHHHHHHhcCC
Q 045638 340 VVMNL-PN----DATEFLDAFRGIYRDR 362 (437)
Q Consensus 340 VImnp-P~----~a~eFLdaa~~llk~~ 362 (437)
|++.- .. ...+.+....+.++++
T Consensus 196 V~lAalVg~~~e~K~~Il~~l~~~m~~g 223 (276)
T PF03059_consen 196 VFLAALVGMDAEPKEEILEHLAKHMAPG 223 (276)
T ss_dssp EEE-TT-S----SHHHHHHHHHHHS-TT
T ss_pred EEEhhhcccccchHHHHHHHHHhhCCCC
Confidence 87664 44 3457788888888775
No 264
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.06 E-value=0.57 Score=39.92 Aligned_cols=91 Identities=19% Similarity=0.165 Sum_probs=63.9
Q ss_pred ccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcChHHH
Q 045638 273 GVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEF 351 (437)
Q Consensus 273 GvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a~eF 351 (437)
|+|.+++.+|+. |++|+++|.++.-.+.+++ .+.+.-+..-..|..+.+..+. ....+|.|+-.... .+-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~---~~~~~d~vid~~g~--~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELT---GGRGVDVVIDCVGS--GDT 71 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHT---TTSSEEEEEESSSS--HHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hccccccccccccccccccccc---ccccceEEEEecCc--HHH
Confidence 689999999984 8899999999999888764 4543111112233444444432 23468887776553 567
Q ss_pred HHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 352 LDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 352 Ldaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
++.+..+++++ +++.++.+..
T Consensus 72 ~~~~~~~l~~~--------G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRPG--------GRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEEE--------EEEEEESSTS
T ss_pred HHHHHHHhccC--------CEEEEEEccC
Confidence 88888999986 7899999887
No 265
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.99 E-value=0.071 Score=52.81 Aligned_cols=88 Identities=13% Similarity=0.191 Sum_probs=65.6
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc-
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN- 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn- 343 (437)
.+++|++||+|-++.++-....+..++||+..+++.+.+- ++= =+.+++|+..|++.. .+.+||.|+.-
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK----g~Y--D~L~~Aea~~Fl~~~----~~er~DLi~AaD 196 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK----GLY--DTLYVAEAVLFLEDL----TQERFDLIVAAD 196 (287)
T ss_pred ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhc----cch--HHHHHHHHHHHhhhc----cCCcccchhhhh
Confidence 5799999999999998877778999999999998776542 321 245667887787532 35689988754
Q ss_pred -CCcC--hHHHHHHHHHHhcCC
Q 045638 344 -LPND--ATEFLDAFRGIYRDR 362 (437)
Q Consensus 344 -pP~~--a~eFLdaa~~llk~~ 362 (437)
+|+. -..++..+.+++.++
T Consensus 197 Vl~YlG~Le~~~~~aa~~L~~g 218 (287)
T COG4976 197 VLPYLGALEGLFAGAAGLLAPG 218 (287)
T ss_pred HHHhhcchhhHHHHHHHhcCCC
Confidence 4552 346777788888876
No 266
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=91.83 E-value=1.6 Score=44.83 Aligned_cols=98 Identities=13% Similarity=0.008 Sum_probs=64.2
Q ss_pred ceEEeecCccchhHHHH------hccCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHHHhhcCCcc
Q 045638 265 QMTGDVFAGVGPISIPA------AKIVKRVYANDLNPYAVDYLERNSVLNKLEK-KIEVFNMDGRRFIDAMFASQKAHKI 337 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~a------Akkg~~V~A~DlNP~Ave~L~~NaklNkv~~-~V~vi~gDa~~~l~~~~~~~~~~~f 337 (437)
.+++|+|||.|.=+-.+ +++...-+++|++.++++.+..+++.-.++. .+..+++|-.+-+..+.........
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 46999999999763332 2234589999999999999999998444441 3566999887765432110001112
Q ss_pred cEE-E-----Ec-CCcChHHHHHHHHH-HhcCC
Q 045638 338 TQV-V-----MN-LPNDATEFLDAFRG-IYRDR 362 (437)
Q Consensus 338 D~V-I-----mn-pP~~a~eFLdaa~~-llk~~ 362 (437)
..+ . -| .|..+..||..+.+ .+.++
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~ 190 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPS 190 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence 222 2 23 45567899999998 88775
No 267
>PRK13699 putative methylase; Provisional
Probab=91.43 E-value=0.49 Score=46.04 Aligned_cols=45 Identities=2% Similarity=0.029 Sum_probs=35.2
Q ss_pred EEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcCh-------------------HHHHHHHHHHhcCC
Q 045638 314 IEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA-------------------TEFLDAFRGIYRDR 362 (437)
Q Consensus 314 V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a-------------------~eFLdaa~~llk~~ 362 (437)
++++++|+.+.++.+ ++.++|.||.|||+.. .+++.++.++++++
T Consensus 2 ~~l~~gD~le~l~~l----pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpg 65 (227)
T PRK13699 2 SRFILGNCIDVMARF----PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKD 65 (227)
T ss_pred CeEEechHHHHHHhC----CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCC
Confidence 368899999998765 3678999999999941 24567777888875
No 268
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=91.40 E-value=0.33 Score=47.56 Aligned_cols=47 Identities=23% Similarity=0.252 Sum_probs=42.1
Q ss_pred ccceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcC
Q 045638 263 FVQMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNK 309 (437)
Q Consensus 263 F~e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNk 309 (437)
-+++|+|.|+|+|..++.+.+.|...+++|++|+-++.+.+-+..+.
T Consensus 222 ~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 222 PGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 35999999999999999998889999999999999999998877543
No 269
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=91.36 E-value=1.6 Score=42.39 Aligned_cols=123 Identities=15% Similarity=0.092 Sum_probs=71.1
Q ss_pred ceEEeecCccchhHHHHhccC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cHHHHH--HHHHHhhcCCccc
Q 045638 265 QMTGDVFAGVGPISIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM-DGRRFI--DAMFASQKAHKIT 338 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg---~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~g-Da~~~l--~~~~~~~~~~~fD 338 (437)
++|+|+||-.|..+--|-++. ..|.++|+-+-. -+. .++++++ |..+-. ..+++..+...+|
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PPE-GATIIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CCC-CcccccccccCCHHHHHHHHHhCCCCccc
Confidence 899999999999999888763 389999996522 122 4566666 554421 2233333566799
Q ss_pred EEEEcCCcC-----------hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHHHHHHhcccceeEEE
Q 045638 339 QVVMNLPND-----------ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIRIALAEVAVNVEMRR 407 (437)
Q Consensus 339 ~VImnpP~~-----------a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~~~L~~~~~~v~vr~ 407 (437)
.|+.|.-.. .++.-+++....-.-. .+.|..-|-.|..++++ .++.|+... +..
T Consensus 139 vVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~----~p~g~fvcK~w~g~e~~--~l~r~l~~~---------f~~ 203 (232)
T KOG4589|consen 139 VVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLL----IPNGSFVCKLWDGSEEA--LLQRRLQAV---------FTN 203 (232)
T ss_pred EEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhc----CCCcEEEEEEecCCchH--HHHHHHHHH---------hhh
Confidence 999885431 1233333321111110 11267788888766543 445555433 344
Q ss_pred eEEecCC
Q 045638 408 VRLVAPG 414 (437)
Q Consensus 408 VR~VAP~ 414 (437)
|+.+.|.
T Consensus 204 Vk~vKP~ 210 (232)
T KOG4589|consen 204 VKKVKPD 210 (232)
T ss_pred cEeeCCc
Confidence 5555554
No 270
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=91.25 E-value=0.86 Score=45.27 Aligned_cols=102 Identities=17% Similarity=0.279 Sum_probs=59.1
Q ss_pred EeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcC
Q 045638 268 GDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 347 (437)
Q Consensus 268 LDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~ 347 (437)
+..|-|+=.++..+.+..-+.+++|+.|..++.|+.|+... .++.+.+.|+++-+..++- +..+==.|++|||+.
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allP--P~~rRglVLIDPpYE 136 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLP--PPERRGLVLIDPPYE 136 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S---TTS-EEEEE-----
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCC--CCCCCeEEEECCCCC
Confidence 67888888888888887779999999999999999998753 3799999999998877652 122234799999984
Q ss_pred h----HHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 348 A----TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 348 a----~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
. ....+++..++++-..+ ..+-+|-..
T Consensus 137 ~~~dy~~v~~~l~~a~kR~~~G-----~~~iWYPi~ 167 (245)
T PF04378_consen 137 QKDDYQRVVDALAKALKRWPTG-----VYAIWYPIK 167 (245)
T ss_dssp STTHHHHHHHHHHHHHHH-TTS-----EEEEEEEES
T ss_pred CchHHHHHHHHHHHHHHhcCCc-----EEEEEeecc
Confidence 3 23345555556554222 256677664
No 271
>PTZ00357 methyltransferase; Provisional
Probab=90.89 E-value=0.47 Score=53.37 Aligned_cols=96 Identities=22% Similarity=0.178 Sum_probs=66.1
Q ss_pred eEEeecCccchhHHH---Hhcc-C--CEEEEEeCCHHHHHHHHHHHH-HcCCC-------CcEEEEEccHHHHHHHHHHh
Q 045638 266 MTGDVFAGVGPISIP---AAKI-V--KRVYANDLNPYAVDYLERNSV-LNKLE-------KKIEVFNMDGRRFIDAMFAS 331 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~---aAkk-g--~~V~A~DlNP~Ave~L~~Nak-lNkv~-------~~V~vi~gDa~~~l~~~~~~ 331 (437)
+|+-+|||=||+--. |++. + .+|||+|.||.++.++..+.+ .+.+. ++|++++.|.|.+-......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999998544 4442 3 389999999887766666542 23453 35999999999983210000
Q ss_pred -----hcCCcccEEEEcCCc------ChHHHHHHHHHHhcC
Q 045638 332 -----QKAHKITQVVMNLPN------DATEFLDAFRGIYRD 361 (437)
Q Consensus 332 -----~~~~~fD~VImnpP~------~a~eFLdaa~~llk~ 361 (437)
...+++|.||.-|-. .+.|=||.+-+.|++
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhh
Confidence 001368999988775 367889998888875
No 272
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=90.42 E-value=1.5 Score=44.16 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=69.5
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE-c
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM-N 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm-n 343 (437)
..+||+|||-|..+..+|..=..|+|.|+++.+...|++ - ..+++..| ++-. .+..||.|.+ |
T Consensus 96 ~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----k----g~~vl~~~--~w~~------~~~~fDvIscLN 159 (265)
T PF05219_consen 96 KSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----K----GFTVLDID--DWQQ------TDFKFDVISCLN 159 (265)
T ss_pred CceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----C----CCeEEehh--hhhc------cCCceEEEeehh
Confidence 679999999999999998876689999999998766654 2 24444333 3321 2457998864 4
Q ss_pred CCc---ChHHHHHHHHHHhcCCCCC-CCCCccEEEEEeccC
Q 045638 344 LPN---DATEFLDAFRGIYRDRPED-VKFTFPKTHVYGFSK 380 (437)
Q Consensus 344 pP~---~a~eFLdaa~~llk~~~~~-~~~~~p~IHvY~F~k 380 (437)
+-. .....|..+.+.++++..- -..-+|+-|+.++..
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~ 200 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGG 200 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCC
Confidence 433 4568899999999884110 012357788888865
No 273
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=89.79 E-value=2 Score=44.05 Aligned_cols=81 Identities=14% Similarity=0.136 Sum_probs=63.9
Q ss_pred ceEEeecCccchhHHHHhccC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIV---KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg---~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
.+.+|+--|-|.-|-.+..+. ++++|+|.+|.|++.+++..+.++ ++++++++...++...+ .......+|-|+
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l-~~~~i~~vDGiL 101 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEAL-KELGIGKVDGIL 101 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHH-HhcCCCceeEEE
Confidence 578999999999999998863 579999999999999999888766 48999999877664432 221245789999
Q ss_pred EcCCcCh
Q 045638 342 MNLPNDA 348 (437)
Q Consensus 342 mnpP~~a 348 (437)
+|+=-++
T Consensus 102 ~DLGVSS 108 (314)
T COG0275 102 LDLGVSS 108 (314)
T ss_pred EeccCCc
Confidence 9886544
No 274
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=89.39 E-value=0.98 Score=45.70 Aligned_cols=121 Identities=15% Similarity=0.108 Sum_probs=76.6
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
.+|.|+|||-+-+|. +....|++.|+-+ + +-.++.+|.++... .+.+.|++|.-+
T Consensus 182 ~vIaD~GCGEakiA~---~~~~kV~SfDL~a--------------~--~~~V~~cDm~~vPl------~d~svDvaV~CL 236 (325)
T KOG3045|consen 182 IVIADFGCGEAKIAS---SERHKVHSFDLVA--------------V--NERVIACDMRNVPL------EDESVDVAVFCL 236 (325)
T ss_pred eEEEecccchhhhhh---ccccceeeeeeec--------------C--CCceeeccccCCcC------ccCcccEEEeeH
Confidence 579999999988776 4445899999864 1 23566788887532 267899999887
Q ss_pred CcC---hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHHHHHHhcccceeEEEeEEecCCCcEEEEE
Q 045638 345 PND---ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIRIALAEVAVNVEMRRVRLVAPGKWMLFAS 421 (437)
Q Consensus 345 P~~---a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~~~L~~~~~~v~vr~VR~VAP~k~m~cis 421 (437)
--. -..|+.++.++|+.+ |.+.+-+....-. ++.. ..+.+ ..+++.....---+++.+..+
T Consensus 237 SLMgtn~~df~kEa~RiLk~g--------G~l~IAEv~SRf~---dv~~-f~r~l----~~lGF~~~~~d~~n~~F~lfe 300 (325)
T KOG3045|consen 237 SLMGTNLADFIKEANRILKPG--------GLLYIAEVKSRFS---DVKG-FVRAL----TKLGFDVKHKDVSNKYFTLFE 300 (325)
T ss_pred hhhcccHHHHHHHHHHHhccC--------ceEEEEehhhhcc---cHHH-HHHHH----HHcCCeeeehhhhcceEEEEE
Confidence 653 369999999999987 5666555432111 2111 11222 223444344444566777777
Q ss_pred EEEcc
Q 045638 422 FVLPE 426 (437)
Q Consensus 422 FrLp~ 426 (437)
|..++
T Consensus 301 fkK~~ 305 (325)
T KOG3045|consen 301 FKKTP 305 (325)
T ss_pred EecCC
Confidence 77654
No 275
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.41 E-value=18 Score=35.54 Aligned_cols=144 Identities=18% Similarity=0.104 Sum_probs=92.0
Q ss_pred ceEEeecCccchhHHHHhcc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g-~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+.||=+||-+|+-.-..+-- | ..|||+|.+|.....|..=++. ..|+-++.+||+.--.... --+.+|.|..
T Consensus 78 ~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~Y~~---~Ve~VDviy~ 151 (231)
T COG1889 78 SKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEKYRH---LVEKVDVIYQ 151 (231)
T ss_pred CEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHHhhh---hcccccEEEE
Confidence 68999999999988888774 4 3899999999999888876654 3479999999986432111 1245899998
Q ss_pred cC--CcChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc--CCCCCcccHHHHHHHHHHhcccceeEEEeEEecCC-CcE
Q 045638 343 NL--PNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS--KARDPEFDFHERIRIALAEVAVNVEMRRVRLVAPG-KWM 417 (437)
Q Consensus 343 np--P~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~--k~~d~~~d~~eRI~~~L~~~~~~v~vr~VR~VAP~-k~m 417 (437)
|- |..+.=+.+.+...++++ +. .+|-+=.-+ -..+++ .+.++--..|.+ ....+..+-+..|- ++|
T Consensus 152 DVAQp~Qa~I~~~Na~~FLk~~--G~----~~i~iKArSIdvT~dp~-~vf~~ev~kL~~--~~f~i~e~~~LePye~DH 222 (231)
T COG1889 152 DVAQPNQAEILADNAEFFLKKG--GY----VVIAIKARSIDVTADPE-EVFKDEVEKLEE--GGFEILEVVDLEPYEKDH 222 (231)
T ss_pred ecCCchHHHHHHHHHHHhcccC--Ce----EEEEEEeecccccCCHH-HHHHHHHHHHHh--cCceeeEEeccCCcccce
Confidence 84 667778888888888886 11 133332222 122222 222221122322 23456667777775 466
Q ss_pred EEEEEE
Q 045638 418 LFASFV 423 (437)
Q Consensus 418 ~cisFr 423 (437)
+.+..+
T Consensus 223 ~~i~~~ 228 (231)
T COG1889 223 ALIVAK 228 (231)
T ss_pred EEEEEe
Confidence 665543
No 276
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.45 E-value=0.78 Score=45.71 Aligned_cols=77 Identities=17% Similarity=0.174 Sum_probs=52.5
Q ss_pred eEEeecCccchhHHHHh--c--cCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEc-cHHHHHHHHHHhhcCCcccE
Q 045638 266 MTGDVFAGVGPISIPAA--K--IVKRVYANDLNPYAVDYLERNSVLN-KLEKKIEVFNM-DGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aA--k--kg~~V~A~DlNP~Ave~L~~NaklN-kv~~~V~vi~g-Da~~~l~~~~~~~~~~~fD~ 339 (437)
+.||+| ||.-.|.-. . .|-+-++-|++|.|++.++.|+..| +++..|+.... |-......... ..+.||.
T Consensus 81 ~~LDIG--vGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig--~nE~yd~ 156 (292)
T COG3129 81 RILDIG--VGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG--KNERYDA 156 (292)
T ss_pred EEEeec--cCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc--ccceeee
Confidence 578875 444444322 1 2557889999999999999999999 88766665543 33332222221 2468999
Q ss_pred EEEcCCc
Q 045638 340 VVMNLPN 346 (437)
Q Consensus 340 VImnpP~ 346 (437)
+.+|||.
T Consensus 157 tlCNPPF 163 (292)
T COG3129 157 TLCNPPF 163 (292)
T ss_pred EecCCCc
Confidence 9999997
No 277
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=86.02 E-value=3 Score=40.95 Aligned_cols=96 Identities=14% Similarity=0.225 Sum_probs=71.0
Q ss_pred ceEEeecCccchhHHHHhcc-C-CEEEEEeCCHHHHHHHHHHHHHcC-------CCCcEEEEEccHHHHHHHHHHhhcCC
Q 045638 265 QMTGDVFAGVGPISIPAAKI-V-KRVYANDLNPYAVDYLERNSVLNK-------LEKKIEVFNMDGRRFIDAMFASQKAH 335 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g-~~V~A~DlNP~Ave~L~~NaklNk-------v~~~V~vi~gDa~~~l~~~~~~~~~~ 335 (437)
-..+|+|||-|.+-+.++-+ . .-+++.||--...+|.++.|+.-+ .. |+.+....+..++++++... ..
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~-ni~vlr~namk~lpn~f~kg-qL 139 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYP-NISVLRTNAMKFLPNFFEKG-QL 139 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccc-cceeeeccchhhccchhhhc-cc
Confidence 45899999999999999876 2 479999999999999999988765 33 78899999999998876421 11
Q ss_pred cccEEEEcCCcC----------hHHHHHHHHHHhcCC
Q 045638 336 KITQVVMNLPND----------ATEFLDAFRGIYRDR 362 (437)
Q Consensus 336 ~fD~VImnpP~~----------a~eFLdaa~~llk~~ 362 (437)
+-+.+...-|.. ....+.....+++.+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~g 176 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREG 176 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcC
Confidence 224444444542 235677777777765
No 278
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=85.30 E-value=0.84 Score=47.29 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=57.1
Q ss_pred EeecCccchhHHHHhcc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHHHhhcCCcccEEEE
Q 045638 268 GDVFAGVGPISIPAAKI----VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF-IDAMFASQKAHKITQVVM 342 (437)
Q Consensus 268 LDlFAGvG~FaI~aAkk----g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~-l~~~~~~~~~~~fD~VIm 342 (437)
+|+ |+|.-.|..+-. +..-.|.|++.-++.++..|+..|++++.+.+++...-+. +.......+...||.+.+
T Consensus 107 iDI--gtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 107 IDI--GTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eec--cCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 555 556666655542 3478999999999999999999999998888888755332 222222223456999999
Q ss_pred cCCcCh
Q 045638 343 NLPNDA 348 (437)
Q Consensus 343 npP~~a 348 (437)
|||...
T Consensus 185 NPPFfe 190 (419)
T KOG2912|consen 185 NPPFFE 190 (419)
T ss_pred CCchhh
Confidence 999855
No 279
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=84.95 E-value=14 Score=36.30 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=67.9
Q ss_pred ceEEeecCccc----hhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccH-HHHHHHHHHhhcCCcc
Q 045638 265 QMTGDVFAGVG----PISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDG-RRFIDAMFASQKAHKI 337 (437)
Q Consensus 265 e~VLDlFAGvG----~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa-~~~l~~~~~~~~~~~f 337 (437)
..+++..|+-| .++|.+|.+ |.+++++--++......++.+...++.+.++++.+|. .+.+..+ ..+
T Consensus 43 kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~------~~i 116 (218)
T PF07279_consen 43 KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL------KGI 116 (218)
T ss_pred eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc------cCC
Confidence 56777766644 344555544 5699999999999888888888778877789998984 5566543 358
Q ss_pred cEEEEcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 045638 338 TQVVMNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGF 378 (437)
Q Consensus 338 D~VImnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F 378 (437)
|.++.|-=. .+|...++++++-++++ .+|-+|--
T Consensus 117 DF~vVDc~~--~d~~~~vl~~~~~~~~G-----aVVV~~Na 150 (218)
T PF07279_consen 117 DFVVVDCKR--EDFAARVLRAAKLSPRG-----AVVVCYNA 150 (218)
T ss_pred CEEEEeCCc--hhHHHHHHHHhccCCCc-----eEEEEecc
Confidence 999988653 45554555556554333 35555543
No 280
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=84.39 E-value=3.7 Score=41.28 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=67.4
Q ss_pred EEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCc
Q 045638 267 TGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN 346 (437)
Q Consensus 267 VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~ 346 (437)
=++.|+|+=-++-.+.+..-+..++|+-|.=+..|+.|.. -+.++.+.++|++.-+...+- +..+=-.|++|||+
T Consensus 92 ~l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~LP--P~erRglVLIDPPf 166 (279)
T COG2961 92 GLRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAHLP--PKERRGLVLIDPPF 166 (279)
T ss_pred CcccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHHHHhhhCC--CCCcceEEEeCCCc
Confidence 3899999988887777776799999999999999999987 234899999999988765541 22334579999998
Q ss_pred ChH----HHHHHHHHHhcC
Q 045638 347 DAT----EFLDAFRGIYRD 361 (437)
Q Consensus 347 ~a~----eFLdaa~~llk~ 361 (437)
... ..++.....++.
T Consensus 167 E~~~eY~rvv~~l~~~~kR 185 (279)
T COG2961 167 ELKDEYQRVVEALAEAYKR 185 (279)
T ss_pred ccccHHHHHHHHHHHHHHh
Confidence 543 224444555554
No 281
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=83.94 E-value=2.6 Score=39.19 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=57.2
Q ss_pred ccchhHHHHhcc-C--CEEEEEeCCHH--HHH---HHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 273 GVGPISIPAAKI-V--KRVYANDLNPY--AVD---YLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 273 GvG~FaI~aAkk-g--~~V~A~DlNP~--Ave---~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
|-=.||+.+|+. + ..++|.-...+ ..+ .+..|++.-.-.+-...+..||.+.-.... .....||+||.|.
T Consensus 6 GdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~--~~~~~FDrIiFNF 83 (166)
T PF10354_consen 6 GDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFR--LKNQRFDRIIFNF 83 (166)
T ss_pred cchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCccccccc--ccCCcCCEEEEeC
Confidence 444556666664 3 36666544333 222 233454433211112346667776543221 0246799999999
Q ss_pred CcCh-----------------HHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 045638 345 PNDA-----------------TEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKA 381 (437)
Q Consensus 345 P~~a-----------------~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~ 381 (437)
|... ..|+.++..+++.+ |.||+--....
T Consensus 84 PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~--------G~IhVTl~~~~ 129 (166)
T PF10354_consen 84 PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPD--------GEIHVTLKDGQ 129 (166)
T ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCC--------CEEEEEeCCCC
Confidence 9854 27788888888875 68999776554
No 282
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.18 E-value=12 Score=38.43 Aligned_cols=101 Identities=18% Similarity=0.105 Sum_probs=64.7
Q ss_pred ceEEeecCc-cchhHHHHhcc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHHHhhcCCcccEE
Q 045638 265 QMTGDVFAG-VGPISIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM-DGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 265 e~VLDlFAG-vG~FaI~aAkk-g~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~g-Da~~~l~~~~~~~~~~~fD~V 340 (437)
.+|+-+||| +|.+++.+|+. |+ +|+++|.+|+-++.+++- .+.+ .+..... |....+.... .+..+|.+
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~---~g~~-~~~~~~~~~~~~~~~~~t---~g~g~D~v 242 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA---GGAD-VVVNPSEDDAGAEILELT---GGRGADVV 242 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh---CCCe-EeecCccccHHHHHHHHh---CCCCCCEE
Confidence 478888888 57777777774 65 999999999999988761 1111 1111111 3333332221 23368987
Q ss_pred EEcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCC
Q 045638 341 VMNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKAR 382 (437)
Q Consensus 341 ImnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~ 382 (437)
+---- +...+..+..+.+++ |.|++-.+....
T Consensus 243 ie~~G--~~~~~~~ai~~~r~g--------G~v~~vGv~~~~ 274 (350)
T COG1063 243 IEAVG--SPPALDQALEALRPG--------GTVVVVGVYGGE 274 (350)
T ss_pred EECCC--CHHHHHHHHHHhcCC--------CEEEEEeccCCc
Confidence 75443 456788888999887 688888887544
No 283
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=81.12 E-value=1.1 Score=45.23 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=30.2
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAV 298 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Av 298 (437)
.++||+|||+|-.|-.+-+.|..|+|+|+--.++
T Consensus 29 k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ysy 62 (330)
T COG3392 29 KIFCDIFAGTGVVGRFFKKAGNKIIANDLEYYSY 62 (330)
T ss_pred CeeeeeccCccHHHHHHHHhcchhhhchHHHHHH
Confidence 6799999999999999988899999999966554
No 284
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=80.67 E-value=1.4 Score=44.22 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=47.4
Q ss_pred eEEeecCccchh--HHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 266 MTGDVFAGVGPI--SIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEK-KIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 266 ~VLDlFAGvG~F--aI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~-~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
+|+.+++|+|.. ++..|...+ -|-|+|+|+.|=+.-..|-.-|=++. +|..+ .+.+|- .-.+|.+.
T Consensus 5 rVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~l--t~kefd--------~l~~~m~l 74 (338)
T KOG0919|consen 5 RVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSL--TVKEFD--------KLQANMLL 74 (338)
T ss_pred ehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccchhhcccccee--eHhhhh--------hcccceEe
Confidence 689999999975 555566555 79999999999988888744332321 23322 233332 23578999
Q ss_pred EcCCc
Q 045638 342 MNLPN 346 (437)
Q Consensus 342 mnpP~ 346 (437)
|.||-
T Consensus 75 MSPpC 79 (338)
T KOG0919|consen 75 MSPPC 79 (338)
T ss_pred eCCCC
Confidence 99983
No 285
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.04 E-value=3.2 Score=42.49 Aligned_cols=57 Identities=14% Similarity=0.032 Sum_probs=49.4
Q ss_pred cceEEeecCccc---hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHH
Q 045638 264 VQMTGDVFAGVG---PISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 323 (437)
Q Consensus 264 ~e~VLDlFAGvG---~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~ 323 (437)
+++||-=|+|.| .+++.+|++|+++..+|+|+++.+-..+.++.+| ++..+..|..+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~ 97 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISD 97 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCC
Confidence 478888888888 6888999999999999999999999999999885 67888888754
No 286
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=79.28 E-value=2.7 Score=41.92 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=31.3
Q ss_pred ceEEeecCccchhHHHHhc--cC-CEEEEEeCCHHHHHHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAK--IV-KRVYANDLNPYAVDYLER 303 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk--kg-~~V~A~DlNP~Ave~L~~ 303 (437)
.+|||+|||.|+-...+.. .. ..++++|.|+.+.+..+.
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~ 76 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKR 76 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHH
Confidence 7899999999986665544 22 389999999999987665
No 287
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=79.12 E-value=3.9 Score=39.64 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=74.3
Q ss_pred eEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHH--HhhcCCcccEEE
Q 045638 266 MTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMF--ASQKAHKITQVV 341 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~--~~~~~~~fD~VI 341 (437)
.||.++||+|--+...|+. ...=.--|.++.....+...+...++++-..++..|+.+-.-... .......||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 3999999999999999985 347778899999999999999888887545677777665311000 000134789876
Q ss_pred E-cC-----CcChHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 045638 342 M-NL-----PNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGF 378 (437)
Q Consensus 342 m-np-----P~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F 378 (437)
+ |. ...+..++..+.++|+++ |.+-+|.=
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~g--------G~L~~YGP 142 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPG--------GLLFLYGP 142 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCC--------CEEEEeCC
Confidence 4 32 223467788888888876 68888873
No 288
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=77.61 E-value=3.2 Score=44.07 Aligned_cols=40 Identities=25% Similarity=0.007 Sum_probs=32.6
Q ss_pred ccc-ceEEeecCccchhHHHHhcc-CCEEEEEeCCHHHHHHH
Q 045638 262 FFV-QMTGDVFAGVGPISIPAAKI-VKRVYANDLNPYAVDYL 301 (437)
Q Consensus 262 FF~-e~VLDlFAGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L 301 (437)
|.+ +.|+|+|||.|+++-.++-+ |..|+|+|-|..+.+.+
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra 192 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERA 192 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHH
Confidence 344 88999999999999888765 67999999997666543
No 289
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=77.07 E-value=8.3 Score=37.52 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=36.7
Q ss_pred hHHHHhccCCEEEEEeCCHHH--HHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcCh
Q 045638 277 ISIPAAKIVKRVYANDLNPYA--VDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDA 348 (437)
Q Consensus 277 FaI~aAkkg~~V~A~DlNP~A--ve~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a 348 (437)
+|..++++|.+|..+|.+|.. ..++......+.+.........+....+...+..-....||+||+|.|...
T Consensus 22 LA~~la~~G~~VlliD~DpQ~s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~yD~iiID~pp~~ 95 (231)
T PRK13849 22 LCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQGFDYALADTHGGS 95 (231)
T ss_pred HHHHHHhCCCcEEEEeCCCCCCHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhhCCCCEEEEeCCCCc
Confidence 445566788899999997765 455533222222221122222222122222221111246999999988643
No 290
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=76.39 E-value=6.9 Score=39.49 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=37.8
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL 310 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv 310 (437)
.+||-.|||.|-++..+|++|..|.|||.+-.| ++--|.-+|+.
T Consensus 58 ~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~M--ll~s~fiLn~~ 101 (270)
T PF07942_consen 58 IRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFM--LLASNFILNHC 101 (270)
T ss_pred cEEEEcCCCcchHHHHHhhccceEEEEEchHHH--HHHHHHHHccc
Confidence 579999999999999999999999999999765 46667777763
No 291
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=74.77 E-value=18 Score=37.77 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=59.0
Q ss_pred ceEEeecC-ccchhHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFA-GVGPISIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFA-GvG~FaI~aAk-kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+.|+-.++ |.|-.++.+|+ .|++|+|+|.|++-.+.+++= +-+ .+++.-..+...... +.+|.||.
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----GAd---~~i~~~~~~~~~~~~-----~~~d~ii~ 235 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----GAD---HVINSSDSDALEAVK-----EIADAIID 235 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----CCc---EEEEcCCchhhHHhH-----hhCcEEEE
Confidence 55655555 57788999998 689999999999998887642 222 334422122222211 23888777
Q ss_pred cCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 343 NLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 343 npP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
--| ..-++.+.++++.+ |++.+-...
T Consensus 236 tv~---~~~~~~~l~~l~~~--------G~~v~vG~~ 261 (339)
T COG1064 236 TVG---PATLEPSLKALRRG--------GTLVLVGLP 261 (339)
T ss_pred CCC---hhhHHHHHHHHhcC--------CEEEEECCC
Confidence 666 34456677788876 566666665
No 292
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=72.90 E-value=2.7 Score=44.01 Aligned_cols=105 Identities=19% Similarity=0.102 Sum_probs=68.1
Q ss_pred cccceEEeecCccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEE
Q 045638 262 FFVQMTGDVFAGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 262 FF~e~VLDlFAGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V 340 (437)
|.+..++|+.||+|+.+...+.. ++.++++|.|++.+.....-...-.+.++..+..+|..+-. + .+..||.+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~---f---edn~fd~v 182 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP---F---EDNTFDGV 182 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC---C---CccccCcE
Confidence 34467999999999999999985 57999999999877655554444445443334444433211 1 23456643
Q ss_pred E-----EcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCC
Q 045638 341 V-----MNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKA 381 (437)
Q Consensus 341 I-----mnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~ 381 (437)
- .-.|. ....+.+.-+.++++ |..-+|+|.+.
T Consensus 183 ~~ld~~~~~~~-~~~~y~Ei~rv~kpG--------G~~i~~e~i~~ 219 (364)
T KOG1269|consen 183 RFLEVVCHAPD-LEKVYAEIYRVLKPG--------GLFIVKEWIKT 219 (364)
T ss_pred EEEeecccCCc-HHHHHHHHhcccCCC--------ceEEeHHHHHh
Confidence 2 22233 456677777777776 68999999864
No 293
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=72.68 E-value=3.7 Score=38.63 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=20.5
Q ss_pred ccchhHHHHhc----cCCEEEEEeCCHHHHHHHH
Q 045638 273 GVGPISIPAAK----IVKRVYANDLNPYAVDYLE 302 (437)
Q Consensus 273 GvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~ 302 (437)
|.|+.++++|. +|.+|+++|+|++-++.++
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 77877777654 6889999999999776654
No 294
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=71.05 E-value=17 Score=35.99 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=47.7
Q ss_pred HHhccCCEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcChHHHHHHHH
Q 045638 280 PAAKIVKRVYANDLNP--YAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATEFLDAFR 356 (437)
Q Consensus 280 ~aAkkg~~V~A~DlNP--~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a~eFLdaa~ 356 (437)
.+|.+|.+|.-+|-+| ...+|.+.-.+.+.+++++.++..+-...+...........||+|++|++..+-.+.+.++
T Consensus 25 ~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~ai 103 (231)
T PF07015_consen 25 ELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLVDLEGGASELNDYAI 103 (231)
T ss_pred HHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHHH
Confidence 4556788888888866 4567744333444567778888876555554433211123589999999976544444443
No 295
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=70.75 E-value=4.4 Score=38.75 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=28.2
Q ss_pred eEEeecCccc--hhHHHHhc-------cC--CEEEEEeCCHHHHHHHHHH
Q 045638 266 MTGDVFAGVG--PISIPAAK-------IV--KRVYANDLNPYAVDYLERN 304 (437)
Q Consensus 266 ~VLDlFAGvG--~FaI~aAk-------kg--~~V~A~DlNP~Ave~L~~N 304 (437)
+|..++|++| ++||.+.- .+ .+|+|.|+|+.+++.+++.
T Consensus 34 rIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 34 RIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp EEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred EEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 5899999999 66665442 12 3899999999999988764
No 296
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=68.99 E-value=20 Score=29.91 Aligned_cols=69 Identities=23% Similarity=0.198 Sum_probs=46.7
Q ss_pred cCccchhHHHHhcc---CC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCc
Q 045638 271 FAGVGPISIPAAKI---VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN 346 (437)
Q Consensus 271 FAGvG~FaI~aAkk---g~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~ 346 (437)
-||.|.++..+++. +. .|+.+|.||+.++.++.. .+.++.||+.+.-- +.+-.-..++.+++..+.
T Consensus 3 I~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~--l~~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 3 IIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEV--LERAGIEKADAVVILTDD 72 (116)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHH--HHHTTGGCESEEEEESSS
T ss_pred EEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhH--HhhcCccccCEEEEccCC
Confidence 47889999998873 44 899999999998777542 25689999986421 111123468888888776
Q ss_pred ChH
Q 045638 347 DAT 349 (437)
Q Consensus 347 ~a~ 349 (437)
...
T Consensus 73 d~~ 75 (116)
T PF02254_consen 73 DEE 75 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 297
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=66.36 E-value=10 Score=37.87 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=54.3
Q ss_pred eEEeecCccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEEccHHHHHHHHHHhhcCCc-cc
Q 045638 266 MTGDVFAGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLE-----KKIEVFNMDGRRFIDAMFASQKAHK-IT 338 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~-----~~V~vi~gDa~~~l~~~~~~~~~~~-fD 338 (437)
.||.+|||+|--++.+|.. ++.|.-- =.|..+..|+.|...|++. ..+.+..-+-..-+.... .... +|
T Consensus 89 ~vlELGsGtglvG~~aa~~~~~~v~lt-D~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~---~~~~~~D 164 (248)
T KOG2793|consen 89 NVLELGSGTGLVGILAALLLGAEVVLT-DLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSF---RLPNPFD 164 (248)
T ss_pred eEEEecCCccHHHHHHHHHhcceeccC-CchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhh---ccCCccc
Confidence 5999999999999999996 4565554 4577888888887666543 234333322221111101 1223 89
Q ss_pred EEEEcCCc----ChHHHHHHHHHHhcCC
Q 045638 339 QVVMNLPN----DATEFLDAFRGIYRDR 362 (437)
Q Consensus 339 ~VImnpP~----~a~eFLdaa~~llk~~ 362 (437)
+|++--+- .-...+..+..++...
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll~~~ 192 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFLLAKD 192 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHHHhcC
Confidence 98877553 2233344444555443
No 298
>PRK10037 cell division protein; Provisional
Probab=66.25 E-value=33 Score=33.21 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=17.5
Q ss_pred hhHHHHhccCCEEEEEeCCHHH
Q 045638 276 PISIPAAKIVKRVYANDLNPYA 297 (437)
Q Consensus 276 ~FaI~aAkkg~~V~A~DlNP~A 297 (437)
.+|..+|++|.+|..+|.+|..
T Consensus 21 nLA~~La~~G~rVLlID~D~q~ 42 (250)
T PRK10037 21 ALAWSLQMLGENVLVIDACPDN 42 (250)
T ss_pred HHHHHHHhcCCcEEEEeCChhh
Confidence 3445667789999999999985
No 299
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=65.58 E-value=36 Score=33.95 Aligned_cols=92 Identities=8% Similarity=0.087 Sum_probs=70.6
Q ss_pred ceEEeecCccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 265 QMTGDVFAGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
.+||.+|=|-|...-.+-.+ ...=+-+|-+|+.++-|+.+.=.- .+||.++.|--.+.++.+. ++.||-|.-|
T Consensus 103 grvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~----d~~FDGI~yD 176 (271)
T KOG1709|consen 103 GRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLP----DKHFDGIYYD 176 (271)
T ss_pred ceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhcccc----ccCcceeEee
Confidence 67999999988877655444 335677899999999998765433 2479999998888887654 5679999999
Q ss_pred CCc----ChHHHHHHHHHHhcCC
Q 045638 344 LPN----DATEFLDAFRGIYRDR 362 (437)
Q Consensus 344 pP~----~a~eFLdaa~~llk~~ 362 (437)
--. ....|-+.+.++++++
T Consensus 177 Ty~e~yEdl~~~hqh~~rLLkP~ 199 (271)
T KOG1709|consen 177 TYSELYEDLRHFHQHVVRLLKPE 199 (271)
T ss_pred chhhHHHHHHHHHHHHhhhcCCC
Confidence 652 3458889999999986
No 300
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=65.50 E-value=33 Score=38.20 Aligned_cols=93 Identities=11% Similarity=0.161 Sum_probs=63.2
Q ss_pred ceEEeecCccchhHHHHhc------------cC-C-EEEEEeCCHHHHHHHHHHHH-------------------HcCC-
Q 045638 265 QMTGDVFAGVGPISIPAAK------------IV-K-RVYANDLNPYAVDYLERNSV-------------------LNKL- 310 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk------------kg-~-~V~A~DlNP~Ave~L~~Nak-------------------lNkv- 310 (437)
-+|+|+|=|+|.-.+.+.+ .. . +.+++|..|-+.+.+.+-.+ ..++
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 4799999999986665542 11 2 79999987755444433221 1222
Q ss_pred ----C-C--cEEEEEccHHHHHHHHHHhhcCCcccEEEEcC--CcC-----hHHHHHHHHHHhcCC
Q 045638 311 ----E-K--KIEVFNMDGRRFIDAMFASQKAHKITQVVMNL--PND-----ATEFLDAFRGIYRDR 362 (437)
Q Consensus 311 ----~-~--~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp--P~~-----a~eFLdaa~~llk~~ 362 (437)
+ + +++.+.||+++.++++. ..+|.+..|+ |.. ..+++..+.++.+++
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~-----~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~ 199 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLD-----ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPG 199 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhcc-----ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCC
Confidence 1 1 46688899999887542 4699999996 542 358888888888876
No 301
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.19 E-value=9.1 Score=39.89 Aligned_cols=41 Identities=20% Similarity=0.086 Sum_probs=35.5
Q ss_pred ccceEEeecCc-cchhHHHHhcc-CC-EEEEEeCCHHHHHHHHH
Q 045638 263 FVQMTGDVFAG-VGPISIPAAKI-VK-RVYANDLNPYAVDYLER 303 (437)
Q Consensus 263 F~e~VLDlFAG-vG~FaI~aAkk-g~-~V~A~DlNP~Ave~L~~ 303 (437)
++.+||-+||| +|-.++..|+. |+ +|+.+|+++..++.+++
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 35899999998 68888888884 76 99999999999999987
No 302
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=64.87 E-value=51 Score=33.04 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=54.0
Q ss_pred ceEEeecC-ccchhHHHHhc-cCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFA-GVGPISIPAAK-IVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFA-GvG~FaI~aAk-kg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|+-.+| |+|.+++.+|+ .|+ +|+++|.+++-.+.+++ -+.+.-+..-..|..+.. . ..+.+|.|+
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~----~--~~g~~D~vi 240 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYK----A--EKGYFDVSF 240 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHh----c--cCCCCCEEE
Confidence 45555554 35666666666 476 79999999998887754 343311111111222221 1 123478665
Q ss_pred EcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 342 MNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
|... +...++.+..+++++ |.+-++...
T Consensus 241 -d~~G-~~~~~~~~~~~l~~~--------G~iv~~G~~ 268 (343)
T PRK09880 241 -EVSG-HPSSINTCLEVTRAK--------GVMVQVGMG 268 (343)
T ss_pred -ECCC-CHHHHHHHHHHhhcC--------CEEEEEccC
Confidence 4443 234567777888876 577777654
No 303
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=64.38 E-value=2.7 Score=42.65 Aligned_cols=36 Identities=17% Similarity=-0.065 Sum_probs=33.3
Q ss_pred ccceEEeecCccchhHHHHhccC-CEEEEEeCCHHHH
Q 045638 263 FVQMTGDVFAGVGPISIPAAKIV-KRVYANDLNPYAV 298 (437)
Q Consensus 263 F~e~VLDlFAGvG~FaI~aAkkg-~~V~A~DlNP~Av 298 (437)
-+++|+|++||.|--+|.+.++| +.|.+.|.|.+.+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 35999999999999999999998 5999999999988
No 304
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=63.77 E-value=70 Score=31.15 Aligned_cols=88 Identities=9% Similarity=0.022 Sum_probs=52.1
Q ss_pred ceEEeecCc-cchhHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAG-VGPISIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAG-vG~FaI~aAk-kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+.|+..++| +|.+++.+|+ .|++|++.+.+++..+.++. .+++.-+.....+..+.+ ... ....+|.++-
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~---~~~~~D~vid 238 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG---LGGGFDVIFD 238 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh---cCCCceEEEE
Confidence 567776665 6888888888 47899999999998877744 344311111112233333 111 2456897765
Q ss_pred cCCcChHHHHHHHHHHhcCC
Q 045638 343 NLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 343 npP~~a~eFLdaa~~llk~~ 362 (437)
.... ...+..+.+.++.+
T Consensus 239 ~~g~--~~~~~~~~~~l~~~ 256 (338)
T cd08254 239 FVGT--QPTFEDAQKAVKPG 256 (338)
T ss_pred CCCC--HHHHHHHHHHhhcC
Confidence 4321 33456667777765
No 305
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=62.14 E-value=82 Score=31.41 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=56.1
Q ss_pred ceEEeecC-ccchhHHHHhc-cCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFA-GVGPISIPAAK-IVKR-VYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFA-GvG~FaI~aAk-kg~~-V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|+-.+| ++|.+++.+|+ .|+. |++++.+++-.+.+++ -+.+.-+..-..+ .+.+.... ....+|.++
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~---~~~~~d~~v 233 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL---RELRFDQLI 233 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh---cCCCCCeEE
Confidence 34444444 35556666666 4774 8999999998877642 2332111111122 22222222 133578677
Q ss_pred EcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 342 MNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
+|.-.. ...++.+.++++++ |.+.++.+..
T Consensus 234 ~d~~G~-~~~~~~~~~~l~~~--------G~iv~~G~~~ 263 (347)
T PRK10309 234 LETAGV-PQTVELAIEIAGPR--------AQLALVGTLH 263 (347)
T ss_pred EECCCC-HHHHHHHHHHhhcC--------CEEEEEccCC
Confidence 775553 45677788888876 5777776654
No 306
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=61.26 E-value=14 Score=37.54 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=31.7
Q ss_pred eEEeecCccc--hhHHHHhc--c------CCEEEEEeCCHHHHHHHHHHH
Q 045638 266 MTGDVFAGVG--PISIPAAK--I------VKRVYANDLNPYAVDYLERNS 305 (437)
Q Consensus 266 ~VLDlFAGvG--~FaI~aAk--k------g~~V~A~DlNP~Ave~L~~Na 305 (437)
+|..++|.+| |+||.++- . ..+|+|.|+|+.+++.+++.+
T Consensus 118 rIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~ 167 (287)
T PRK10611 118 RVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI 167 (287)
T ss_pred EEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence 6999999999 66666542 1 237999999999999998763
No 307
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=61.16 E-value=37 Score=35.43 Aligned_cols=71 Identities=17% Similarity=0.102 Sum_probs=48.8
Q ss_pred CccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcC
Q 045638 272 AGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 347 (437)
Q Consensus 272 AGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~ 347 (437)
||.|.+|..+++ .|..|+.+|.||+.++.+++.. . .+.++.||+.+.- .+.+. ....+|.|+.-.|..
T Consensus 237 iG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~-~~~~i~gd~~~~~-~L~~~-~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 237 VGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----P-NTLVLHGDGTDQE-LLEEE-GIDEADAFIALTNDD 308 (453)
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----C-CCeEEECCCCCHH-HHHhc-CCccCCEEEECCCCc
Confidence 666888888776 3679999999999988776632 2 3668899986531 11111 234688888887765
Q ss_pred hHH
Q 045638 348 ATE 350 (437)
Q Consensus 348 a~e 350 (437)
...
T Consensus 309 ~~n 311 (453)
T PRK09496 309 EAN 311 (453)
T ss_pred HHH
Confidence 433
No 308
>PLN02780 ketoreductase/ oxidoreductase
Probab=60.64 E-value=55 Score=33.01 Aligned_cols=59 Identities=10% Similarity=-0.065 Sum_probs=39.1
Q ss_pred cceEEeecCccc---hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Q 045638 264 VQMTGDVFAGVG---PISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGR 322 (437)
Q Consensus 264 ~e~VLDlFAGvG---~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~ 322 (437)
+.+++-.||..| .++..+|++|++|+.++.|++.++.+.+.++...-..++..+..|..
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 456666665333 35555666799999999999999888877765321124666666653
No 309
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=59.86 E-value=40 Score=36.84 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=81.6
Q ss_pred ceEEeecCccchhHHHHhc-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHh-hcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAK-IV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFAS-QKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk-kg-~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~-~~~~~fD~VI 341 (437)
..++-++=|.|.+...+-. .+ ..++|+++.|.+++.+..+.-.-.-. +..+.-.|+.+++.+..+. ..+..||.+.
T Consensus 297 ~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 297 GKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred CcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 3455555555666554332 23 58999999999999998887433222 3445557889998876542 1245688877
Q ss_pred EcC------------Cc-ChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCcccHHHHHHHHHHh-----cccce
Q 045638 342 MNL------------PN-DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPEFDFHERIRIALAE-----VAVNV 403 (437)
Q Consensus 342 mnp------------P~-~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~~d~~eRI~~~L~~-----~~~~v 403 (437)
.|. |. -+..+|......+.+. |++-++-..+.......+..++...... ..+.+
T Consensus 376 ~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~--------g~f~inlv~r~~~~~~~~~~~l~~vf~~l~~~~~~~~~ 447 (482)
T KOG2352|consen 376 VDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPR--------GMFIINLVTRNSSFKDEVLMNLAKVFPQLYHHQLEEDV 447 (482)
T ss_pred EECCCCCcccCcCCchHHHHHHHHHHHhhccCcc--------ceEEEEEecCCcchhHHHHHhhhhhhHHHhhhhccCCC
Confidence 652 11 2456777777777765 4554444445444333444444432211 12344
Q ss_pred eEEEeEEecCCC
Q 045638 404 EMRRVRLVAPGK 415 (437)
Q Consensus 404 ~vr~VR~VAP~k 415 (437)
+....+..+|.+
T Consensus 448 N~il~~~~~~~~ 459 (482)
T KOG2352|consen 448 NEILIGQMPPKQ 459 (482)
T ss_pred ceeEEeecChhc
Confidence 555555555544
No 310
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=59.59 E-value=13 Score=40.75 Aligned_cols=39 Identities=28% Similarity=0.146 Sum_probs=33.5
Q ss_pred ceEEeecCc-cchhHHHHhcc-CCEEEEEeCCHHHHHHHHH
Q 045638 265 QMTGDVFAG-VGPISIPAAKI-VKRVYANDLNPYAVDYLER 303 (437)
Q Consensus 265 e~VLDlFAG-vG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~ 303 (437)
++|+-+||| +|-.++.+|+. |+.|+++|.+|+..+.++.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 889999998 57788888874 8899999999999887765
No 311
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=59.48 E-value=7.3 Score=42.52 Aligned_cols=38 Identities=16% Similarity=0.043 Sum_probs=27.7
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEE---eCCHHHHHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYAN---DLNPYAVDYLE 302 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~---DlNP~Ave~L~ 302 (437)
.++||+|||+|.||-.+..++..+.++ |..+..++.+.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfal 159 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFAL 159 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhh
Confidence 579999999999999999998654443 34444455443
No 312
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=59.37 E-value=93 Score=31.88 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=32.6
Q ss_pred ceEEeecCcc-chhHHHHhcc-CC-EEEEEeCCHHHHHHHHHH
Q 045638 265 QMTGDVFAGV-GPISIPAAKI-VK-RVYANDLNPYAVDYLERN 304 (437)
Q Consensus 265 e~VLDlFAGv-G~FaI~aAkk-g~-~V~A~DlNP~Ave~L~~N 304 (437)
++|+..+||. |.+++.+|+. |. .|+++|.+++..+.+++.
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 6788888876 7788888874 66 699999999988887764
No 313
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=58.95 E-value=7.3 Score=41.59 Aligned_cols=30 Identities=33% Similarity=0.472 Sum_probs=24.9
Q ss_pred ccchhHHHHhc----cCCEEEEEeCCHHHHHHHH
Q 045638 273 GVGPISIPAAK----IVKRVYANDLNPYAVDYLE 302 (437)
Q Consensus 273 GvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~ 302 (437)
|-|+.++|.|. +|..|+++|||+..++.++
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln 49 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLN 49 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHh
Confidence 77888887664 6889999999999998664
No 314
>PRK07063 short chain dehydrogenase; Provisional
Probab=58.61 E-value=1.1e+02 Score=28.94 Aligned_cols=79 Identities=14% Similarity=0.024 Sum_probs=47.8
Q ss_pred ceEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~ 336 (437)
.+|+-.|+ .|.++..++ ++|++|+.++.|++..+.+...++..+...++.++.+|..+. +...++. ...+.
T Consensus 8 k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 86 (260)
T PRK07063 8 KVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFGP 86 (260)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 34555554 455555444 468999999999998888777766522233688888886542 1111110 01246
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|-|.
T Consensus 87 id~li~~a 94 (260)
T PRK07063 87 LDVLVNNA 94 (260)
T ss_pred CcEEEECC
Confidence 88888763
No 315
>PHA02518 ParA-like protein; Provisional
Probab=57.79 E-value=24 Score=32.38 Aligned_cols=61 Identities=20% Similarity=0.081 Sum_probs=32.2
Q ss_pred HHHhccCCEEEEEeCCHHH--HHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHHHhhcCCcccEEEEcCCcC
Q 045638 279 IPAAKIVKRVYANDLNPYA--VDYLERNSVLNKLEKKIEVFN--MDGRRFIDAMFASQKAHKITQVVMNLPND 347 (437)
Q Consensus 279 I~aAkkg~~V~A~DlNP~A--ve~L~~NaklNkv~~~V~vi~--gDa~~~l~~~~~~~~~~~fD~VImnpP~~ 347 (437)
..+|++|.+|..+|.+|.. ..|+.. ..++. +.+.... .+..+.+... ...||.||+|.|.+
T Consensus 23 ~~la~~g~~vlliD~D~q~~~~~~~~~--~~~~~-~~i~~~~~~~~~~~~l~~~-----~~~~d~viiD~p~~ 87 (211)
T PHA02518 23 SWLHADGHKVLLVDLDPQGSSTDWAEA--REEGE-PLIPVVRMGKSIRADLPKV-----ASGYDYVVVDGAPQ 87 (211)
T ss_pred HHHHhCCCeEEEEeCCCCCChHHHHHh--cccCC-CCCchhhccHHHHHHHHHH-----hccCCEEEEeCCCC
Confidence 3455678899999999874 333321 11111 1122111 1122333222 24699999998864
No 316
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=57.50 E-value=23 Score=37.87 Aligned_cols=92 Identities=16% Similarity=0.044 Sum_probs=63.1
Q ss_pred ceEEeecCccchhHHHHhcc-CC-EEEEEeCCHHHHHHHHHHHHHcC-------C-CCcEEEEEccHHHH--HHHHHHhh
Q 045638 265 QMTGDVFAGVGPISIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNK-------L-EKKIEVFNMDGRRF--IDAMFASQ 332 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g~-~V~A~DlNP~Ave~L~~NaklNk-------v-~~~V~vi~gDa~~~--l~~~~~~~ 332 (437)
++..|+|+|||-....+|.. ++ .-+++++.+..-+++..|.+.|+ - .+.++.++++..+- ...+
T Consensus 194 D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI---- 269 (419)
T KOG3924|consen 194 DVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI---- 269 (419)
T ss_pred CcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH----
Confidence 88999999999887766653 44 67888998888888888777663 1 23578888886542 2222
Q ss_pred cCCcccEEEEcCCcChHHHHHHHHHHhcC
Q 045638 333 KAHKITQVVMNLPNDATEFLDAFRGIYRD 361 (437)
Q Consensus 333 ~~~~fD~VImnpP~~a~eFLdaa~~llk~ 361 (437)
....++|++|--.+..+.--....++..
T Consensus 270 -~~eatvi~vNN~~Fdp~L~lr~~eil~~ 297 (419)
T KOG3924|consen 270 -QTEATVIFVNNVAFDPELKLRSKEILQK 297 (419)
T ss_pred -hhcceEEEEecccCCHHHHHhhHHHHhh
Confidence 2347899999888766553333344443
No 317
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=57.35 E-value=97 Score=31.47 Aligned_cols=88 Identities=16% Similarity=0.057 Sum_probs=48.0
Q ss_pred ceEEeecC-ccchhHHHHhc-cCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFA-GVGPISIPAAK-IVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFA-GvG~FaI~aAk-kg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|+-.++ ++|.+++.+|+ .|+ .|+++|.+++-.+.+++ .+.+.-+..-..|..+.+.... ...+|.|+
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~----~~g~d~vi 264 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT----GGGVDYAF 264 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh----CCCCCEEE
Confidence 45555554 34555566666 477 79999999998887754 3443111111122222232221 22588777
Q ss_pred EcCCcChHHHHHHHHHHhcCC
Q 045638 342 MNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~ 362 (437)
--.. ....++.+.++++.+
T Consensus 265 d~~G--~~~~~~~~~~~l~~~ 283 (371)
T cd08281 265 EMAG--SVPALETAYEITRRG 283 (371)
T ss_pred ECCC--ChHHHHHHHHHHhcC
Confidence 5432 234556667777765
No 318
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.70 E-value=82 Score=31.20 Aligned_cols=41 Identities=20% Similarity=0.000 Sum_probs=28.5
Q ss_pred eEEeecCccch--hHHHHhccCCEEEEEeCCHHHHHHHHHHHH
Q 045638 266 MTGDVFAGVGP--ISIPAAKIVKRVYANDLNPYAVDYLERNSV 306 (437)
Q Consensus 266 ~VLDlFAGvG~--FaI~aAkkg~~V~A~DlNP~Ave~L~~Nak 306 (437)
.|.=+|+|.=. ++..+|..|..|+.+|.++++++.++.+++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 45556666433 333444567899999999999988877653
No 319
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=56.70 E-value=23 Score=33.08 Aligned_cols=41 Identities=20% Similarity=0.059 Sum_probs=28.6
Q ss_pred EEeecCccc--hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHH
Q 045638 267 TGDVFAGVG--PISIPAAKIVKRVYANDLNPYAVDYLERNSVL 307 (437)
Q Consensus 267 VLDlFAGvG--~FaI~aAkkg~~V~A~DlNP~Ave~L~~Nakl 307 (437)
|.-+|||+= .++..+|..|..|...|.||++++.+++.++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 455666642 44555666799999999999999888777664
No 320
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=56.63 E-value=49 Score=29.86 Aligned_cols=85 Identities=13% Similarity=0.155 Sum_probs=55.1
Q ss_pred EEeecCccchhHHH--HhccCCEEEEEeCCHHHHHHHHHHHHHcCC-------CCcEEEEEccHHHHHHHHHHhhcCCcc
Q 045638 267 TGDVFAGVGPISIP--AAKIVKRVYANDLNPYAVDYLERNSVLNKL-------EKKIEVFNMDGRRFIDAMFASQKAHKI 337 (437)
Q Consensus 267 VLDlFAGvG~FaI~--aAkkg~~V~A~DlNP~Ave~L~~NaklNkv-------~~~V~vi~gDa~~~l~~~~~~~~~~~f 337 (437)
|.-+|||.+..++. ++.+|..|+-...+++.++.++++-. |.. ..++.+ ..|..+.+. ..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~-n~~~~~~~~l~~~i~~-t~dl~~a~~---------~a 70 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQ-NPKYLPGIKLPENIKA-TTDLEEALE---------DA 70 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTS-ETTTSTTSBEETTEEE-ESSHHHHHT---------T-
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCC-CCCCCCCcccCccccc-ccCHHHHhC---------cc
Confidence 55567777766654 44568899999999999999887643 322 235544 456666552 36
Q ss_pred cEEEEcCCcCh-HHHHHHHHHHhcCC
Q 045638 338 TQVVMNLPNDA-TEFLDAFRGIYRDR 362 (437)
Q Consensus 338 D~VImnpP~~a-~eFLdaa~~llk~~ 362 (437)
|.|++-.|..+ .++++.+...++++
T Consensus 71 d~IiiavPs~~~~~~~~~l~~~l~~~ 96 (157)
T PF01210_consen 71 DIIIIAVPSQAHREVLEQLAPYLKKG 96 (157)
T ss_dssp SEEEE-S-GGGHHHHHHHHTTTSHTT
T ss_pred cEEEecccHHHHHHHHHHHhhccCCC
Confidence 99999999866 45666666666543
No 321
>PRK05867 short chain dehydrogenase; Provisional
Probab=54.16 E-value=1.3e+02 Score=28.40 Aligned_cols=77 Identities=16% Similarity=0.006 Sum_probs=47.8
Q ss_pred ceEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~ 336 (437)
.+++-.|+ +|.++..++ ++|++|+..+.+++..+.+...++..+ .++.++.+|..+. +..++.. ...+.
T Consensus 10 k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 10 KRALITGA-STGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 45555554 444555444 468899999999998888877666544 3577888886542 1111110 01246
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|.|.
T Consensus 87 id~lv~~a 94 (253)
T PRK05867 87 IDIAVCNA 94 (253)
T ss_pred CCEEEECC
Confidence 89888774
No 322
>PRK05854 short chain dehydrogenase; Provisional
Probab=53.16 E-value=1.4e+02 Score=29.78 Aligned_cols=78 Identities=12% Similarity=-0.050 Sum_probs=45.3
Q ss_pred eEEeecCccchhHHHH----hccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~a----Akkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+++-.|| +|.++..+ ++.|++|+.+..|++..+.+...+....-..++.++..|..+.- ..+... ...+.+
T Consensus 16 ~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~~i 94 (313)
T PRK05854 16 RAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGRPI 94 (313)
T ss_pred EEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Confidence 4444443 34444444 44689999999999877776666654322235888888875432 111110 113468
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.|.
T Consensus 95 D~li~nA 101 (313)
T PRK05854 95 HLLINNA 101 (313)
T ss_pred cEEEECC
Confidence 8888663
No 323
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=53.15 E-value=1.2e+02 Score=28.68 Aligned_cols=74 Identities=12% Similarity=-0.013 Sum_probs=44.3
Q ss_pred EEeecCccchhHHH----HhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCccc
Q 045638 267 TGDVFAGVGPISIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKIT 338 (437)
Q Consensus 267 VLDlFAGvG~FaI~----aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~fD 338 (437)
|+-.|+ .|.++.. ++++|++|+.++.++...+.+.+.++..+ ++.++.+|..+. +..++.. ...+.+|
T Consensus 3 vlItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 3 VLVTAS-SRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred EEEEcC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 344443 3444444 44578999999999998877776665432 577888886432 1222111 0124689
Q ss_pred EEEEcC
Q 045638 339 QVVMNL 344 (437)
Q Consensus 339 ~VImnp 344 (437)
.+|-|.
T Consensus 79 ~li~na 84 (259)
T PRK08340 79 ALVWNA 84 (259)
T ss_pred EEEECC
Confidence 888763
No 324
>PRK07062 short chain dehydrogenase; Provisional
Probab=52.28 E-value=1.5e+02 Score=28.04 Aligned_cols=79 Identities=11% Similarity=-0.042 Sum_probs=46.7
Q ss_pred ceEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~ 336 (437)
.+++-.| |+|.++..++ ++|++|++++.+++..+.+.+.+....-..++.++..|..+.- ..+... ..-+.
T Consensus 9 k~~lItG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 87 (265)
T PRK07062 9 RVAVVTG-GSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFGG 87 (265)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 3455555 3444444444 4689999999999888777666654322225778888876532 111110 01245
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|.|-
T Consensus 88 id~li~~A 95 (265)
T PRK07062 88 VDMLVNNA 95 (265)
T ss_pred CCEEEECC
Confidence 89888774
No 325
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=52.10 E-value=1.3e+02 Score=30.47 Aligned_cols=96 Identities=18% Similarity=0.096 Sum_probs=58.1
Q ss_pred ceEEeecC--ccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-c-cHHHHHHHHHHhhcCCcccE
Q 045638 265 QMTGDVFA--GVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN-M-DGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFA--GvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~-g-Da~~~l~~~~~~~~~~~fD~ 339 (437)
++|+=.+| |+|.+++.+|+. |++|++++.+++-.+.++.. .+.+ .+--.. . |..+.+.... +..+|.
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~-~vi~~~~~~~~~~~i~~~~----~~gvD~ 231 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD-EAFNYKEEPDLDAALKRYF----PEGIDI 231 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC-EEEECCCcccHHHHHHHHC----CCCcEE
Confidence 67776665 589999988884 88999999999887776532 3443 221111 1 3333333321 235787
Q ss_pred EEEcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 340 VVMNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 340 VImnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
|+ |.-. . ..+..+..+++++ |.+.+|...
T Consensus 232 v~-d~vG-~-~~~~~~~~~l~~~--------G~iv~~G~~ 260 (348)
T PLN03154 232 YF-DNVG-G-DMLDAALLNMKIH--------GRIAVCGMV 260 (348)
T ss_pred EE-ECCC-H-HHHHHHHHHhccC--------CEEEEECcc
Confidence 66 4333 2 3556677777775 566666653
No 326
>COG4889 Predicted helicase [General function prediction only]
Probab=50.51 E-value=13 Score=43.48 Aligned_cols=43 Identities=16% Similarity=0.052 Sum_probs=34.1
Q ss_pred ceEEeecCccchhHHHHhc----------c-CCEEEEEeCCHHHHHHHHHHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAK----------I-VKRVYANDLNPYAVDYLERNSVL 307 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk----------k-g~~V~A~DlNP~Ave~L~~Nakl 307 (437)
-.|+|.|+|+|.|-..+.. + .....|+||---|+-.+..|++.
T Consensus 847 vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLhA~eIvLLsYYIAaiNIe~ 900 (1518)
T COG4889 847 VHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELHAFEIVLLSYYIAAINIEQ 900 (1518)
T ss_pred eeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHH
Confidence 5699999999999876543 1 23688999988888888889863
No 327
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=50.33 E-value=1.2e+02 Score=29.47 Aligned_cols=87 Identities=14% Similarity=0.035 Sum_probs=50.5
Q ss_pred ceEEeec--CccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVF--AGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlF--AGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
+.|+=.+ .|+|.+++.+|+. |++|++++.+++-.+.++. .+.+.-+..-..|..+.+... ....+|.|+
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~----~~~gvd~vl 216 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEA----APDGIDCYF 216 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH----CCCCcEEEE
Confidence 4555554 5788888888884 7899999999998887754 344311111112333333222 124578666
Q ss_pred EcCCcChHHHHHHHHHHhcCC
Q 045638 342 MNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~ 362 (437)
|.-. . ..+....++++.+
T Consensus 217 -d~~g-~-~~~~~~~~~l~~~ 234 (329)
T cd08294 217 -DNVG-G-EFSSTVLSHMNDF 234 (329)
T ss_pred -ECCC-H-HHHHHHHHhhccC
Confidence 4333 2 4456666667654
No 328
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=49.69 E-value=15 Score=36.39 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=26.6
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVD 299 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave 299 (437)
...+++|||.|..++.... ..++.+|+||+-+.
T Consensus 27 ~~yvEPF~Gggsv~l~~~~--~~~~lND~n~~Li~ 59 (266)
T TIGR00571 27 NCLVEPFVGGGAVFFNLNP--KRYLLNDINEDLIN 59 (266)
T ss_pred CEEEEecCCcchhheeecC--cEEEEecCCHHHHH
Confidence 3689999999999985543 35888999998774
No 329
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=49.57 E-value=1.1e+02 Score=28.74 Aligned_cols=75 Identities=11% Similarity=-0.061 Sum_probs=45.8
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHH--------HHHHHHHHhhc
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGR--------RFIDAMFASQK 333 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~--------~~l~~~~~~~~ 333 (437)
+|+=.| |+|.++..+++ .|++|++++.+++..+.+...++..+-. ++.++.+|+. ++.....+ .
T Consensus 14 ~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~--~ 89 (247)
T PRK08945 14 IILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGP-QPAIIPLDLLTATPQNYQQLADTIEE--Q 89 (247)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEecccCCCHHHHHHHHHHHHH--H
Confidence 444444 56777766554 5889999999999888777766554432 4666666653 11111111 1
Q ss_pred CCcccEEEEcC
Q 045638 334 AHKITQVVMNL 344 (437)
Q Consensus 334 ~~~fD~VImnp 344 (437)
.+.+|.||.+-
T Consensus 90 ~~~id~vi~~A 100 (247)
T PRK08945 90 FGRLDGVLHNA 100 (247)
T ss_pred hCCCCEEEECC
Confidence 24689888763
No 330
>PRK08862 short chain dehydrogenase; Provisional
Probab=49.36 E-value=1.6e+02 Score=27.87 Aligned_cols=78 Identities=17% Similarity=0.072 Sum_probs=47.6
Q ss_pred ceEEeecCccc---hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCC-c
Q 045638 265 QMTGDVFAGVG---PISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH-K 336 (437)
Q Consensus 265 e~VLDlFAGvG---~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~-~ 336 (437)
.+++=.|++.| .++..++++|+.|+.++.|+..++-+.+.++..+. .+..+..|..+. +..++.. ..-+ .
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 83 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTD--NVYSFQLKDFSQESIRHLFDAIEQQFNRA 83 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--CeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 34555555443 34555666799999999999998888777766553 466666664432 1211110 0113 6
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|.|.
T Consensus 84 iD~li~na 91 (227)
T PRK08862 84 PDVLVNNW 91 (227)
T ss_pred CCEEEECC
Confidence 89888875
No 331
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=49.35 E-value=1.5e+02 Score=29.46 Aligned_cols=93 Identities=19% Similarity=0.111 Sum_probs=56.9
Q ss_pred ceEEeecC--ccchhHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE---c-cHHHHHHHHHHhhcCCcc
Q 045638 265 QMTGDVFA--GVGPISIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFN---M-DGRRFIDAMFASQKAHKI 337 (437)
Q Consensus 265 e~VLDlFA--GvG~FaI~aAk-kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~---g-Da~~~l~~~~~~~~~~~f 337 (437)
+.|+=.++ |+|.+++.+|+ .|++|++.+.+++-.+.++... +.+ . +++ . |..+.+.... ...+
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~-~--vi~~~~~~~~~~~i~~~~----~~gv 222 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFD-D--AFNYKEEPDLDAALKRYF----PNGI 222 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCc-e--eEEcCCcccHHHHHHHhC----CCCc
Confidence 67777664 68888888888 4889999999998887776532 443 2 222 1 3333333221 2357
Q ss_pred cEEEEcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 045638 338 TQVVMNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGF 378 (437)
Q Consensus 338 D~VImnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F 378 (437)
|.|+ |.-. . ..+..+..+++++ |.+..+..
T Consensus 223 d~v~-d~~g-~-~~~~~~~~~l~~~--------G~iv~~G~ 252 (338)
T cd08295 223 DIYF-DNVG-G-KMLDAVLLNMNLH--------GRIAACGM 252 (338)
T ss_pred EEEE-ECCC-H-HHHHHHHHHhccC--------cEEEEecc
Confidence 8666 5433 2 4456667777765 45555554
No 332
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=49.32 E-value=1.3e+02 Score=24.09 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=46.5
Q ss_pred CccchhHHHHhc----cC---CEEE-EEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc
Q 045638 272 AGVGPISIPAAK----IV---KRVY-ANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN 343 (437)
Q Consensus 272 AGvG~FaI~aAk----kg---~~V~-A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn 343 (437)
-|.|.++-.+++ .| .+|+ +.+.+|+..+.+.+... +.+...|..+.+. ..|.|++-
T Consensus 5 IG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------~advvila 68 (96)
T PF03807_consen 5 IGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-------VQATADDNEEAAQ---------EADVVILA 68 (96)
T ss_dssp ESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-------TEEESEEHHHHHH---------HTSEEEE-
T ss_pred ECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-------cccccCChHHhhc---------cCCEEEEE
Confidence 477888777766 46 6888 55999999988765442 3344446666654 25887776
Q ss_pred -CCcChHHHHHHHHHHhcC
Q 045638 344 -LPNDATEFLDAFRGIYRD 361 (437)
Q Consensus 344 -pP~~a~eFLdaa~~llk~ 361 (437)
||....+.++.. ....+
T Consensus 69 v~p~~~~~v~~~i-~~~~~ 86 (96)
T PF03807_consen 69 VKPQQLPEVLSEI-PHLLK 86 (96)
T ss_dssp S-GGGHHHHHHHH-HHHHT
T ss_pred ECHHHHHHHHHHH-hhccC
Confidence 455556777776 44443
No 333
>PRK06172 short chain dehydrogenase; Provisional
Probab=49.29 E-value=1.7e+02 Score=27.51 Aligned_cols=77 Identities=10% Similarity=-0.047 Sum_probs=47.4
Q ss_pred ceEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~ 336 (437)
.+++-.|+ +|.++..++ ++|++|++++.+++..+.+...++..+ .++.++.+|..+. +...++. ...+.
T Consensus 8 k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 8 KVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYGR 84 (253)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 34555553 455555544 468899999999988877777665443 3688888887542 1111110 01245
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|.+.
T Consensus 85 id~li~~a 92 (253)
T PRK06172 85 LDYAFNNA 92 (253)
T ss_pred CCEEEECC
Confidence 79888763
No 334
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=49.01 E-value=1.4e+02 Score=29.50 Aligned_cols=97 Identities=15% Similarity=-0.014 Sum_probs=51.6
Q ss_pred ceEEeecC-ccchhHHHHhc-cCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFA-GVGPISIPAAK-IVKR-VYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFA-GvG~FaI~aAk-kg~~-V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|+=.++ ++|.+++.+|+ .|++ |++++.+++-.+.+++ .+.+.-+..-..+ .+.+.... ....+|.|+
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~---~~~~~d~vi 236 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT---SGAGADVAI 236 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh---CCCCCCEEE
Confidence 45555543 35555555666 4776 9999999988777643 2433111111112 22222221 233588776
Q ss_pred EcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 342 MNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
--... ...+..+.++++.+ |.+..+.+.
T Consensus 237 d~~g~--~~~~~~~~~~l~~~--------G~~v~~g~~ 264 (339)
T cd08239 237 ECSGN--TAARRLALEAVRPW--------GRLVLVGEG 264 (339)
T ss_pred ECCCC--HHHHHHHHHHhhcC--------CEEEEEcCC
Confidence 44332 34456666777765 466666654
No 335
>PRK07677 short chain dehydrogenase; Provisional
Probab=48.96 E-value=1.6e+02 Score=27.69 Aligned_cols=76 Identities=12% Similarity=0.005 Sum_probs=44.9
Q ss_pred eEEeecCccchhHHH----HhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~----aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~f 337 (437)
+++-.|+ .|.++.. ++++|++|++.+.++...+.+...++..+ .++.++.+|..+. +...... ...+.+
T Consensus 3 ~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 3 VVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred EEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 4454444 4444444 44468899999999988777766554433 3688888886432 1111110 012457
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.|.
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 8888764
No 336
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=48.83 E-value=59 Score=36.15 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=47.3
Q ss_pred CccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcC
Q 045638 272 AGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 347 (437)
Q Consensus 272 AGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~ 347 (437)
||-|.++-.+++ .|..|+++|.||+.++.+++ . ...++.||+.+.- .+++-.-...|.+|.-.+..
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~--~L~~agi~~A~~vv~~~~d~ 475 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y----GYKVYYGDATQLE--LLRAAGAEKAEAIVITCNEP 475 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C----CCeEEEeeCCCHH--HHHhcCCccCCEEEEEeCCH
Confidence 889999998886 36699999999999988764 1 2568899987631 11111234678888777764
Q ss_pred h
Q 045638 348 A 348 (437)
Q Consensus 348 a 348 (437)
.
T Consensus 476 ~ 476 (601)
T PRK03659 476 E 476 (601)
T ss_pred H
Confidence 3
No 337
>PRK09242 tropinone reductase; Provisional
Probab=48.45 E-value=1.4e+02 Score=28.20 Aligned_cols=79 Identities=13% Similarity=-0.038 Sum_probs=48.5
Q ss_pred ceEEeecCccchhHHHH----hccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~a----Akkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~ 336 (437)
.+++-.|+ .|.++..+ +++|++|++++.+++..+.+..+++...-..++.++.+|..+. +..++.. ..-+.
T Consensus 10 k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 88 (257)
T PRK09242 10 QTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWDG 88 (257)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 45555554 44444444 4468899999999998888877776542223688888887542 1111110 01246
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|.+.
T Consensus 89 id~li~~a 96 (257)
T PRK09242 89 LHILVNNA 96 (257)
T ss_pred CCEEEECC
Confidence 89988776
No 338
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.08 E-value=1.3e+02 Score=27.88 Aligned_cols=75 Identities=16% Similarity=0.030 Sum_probs=46.3
Q ss_pred eEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+|+=.| |+|.++..++ ++|.+|++.+.++...+.+..++.. ..++.++.+|..+.- ...+.. .....+
T Consensus 7 ~vlItG-asg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK07231 7 VAIVTG-ASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERFGSV 82 (251)
T ss_pred EEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 344444 4556665544 4688999999999888777766654 235788888865421 111110 012458
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.||.+.
T Consensus 83 d~vi~~a 89 (251)
T PRK07231 83 DILVNNA 89 (251)
T ss_pred CEEEECC
Confidence 9988775
No 339
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=47.99 E-value=94 Score=27.65 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=51.7
Q ss_pred cEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCc--C-----hHHHHHHHHHHhcCCCCCCCCCccEEEEEeccCCCCCc
Q 045638 313 KIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN--D-----ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSKARDPE 385 (437)
Q Consensus 313 ~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~--~-----a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k~~d~~ 385 (437)
+++++.||+++.++++ ...+|.|.+|+-. . +.+++..+.++++++ +++--|+-+
T Consensus 32 ~L~L~~gDa~~~l~~l-----~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~--------~~l~Tys~a------ 92 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL-----DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPG--------GTLATYSSA------ 92 (124)
T ss_dssp EEEEEES-HHHHHHHB------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEE--------EEEEES--B------
T ss_pred EEEEEEcHHHHHHHhC-----cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCC--------cEEEEeech------
Confidence 4688999999998764 3579999999633 1 368999999998876 455555432
Q ss_pred ccHHHHHHHHHHhcccceeEEEeEEecCCCcEEEE
Q 045638 386 FDFHERIRIALAEVAVNVEMRRVRLVAPGKWMLFA 420 (437)
Q Consensus 386 ~d~~eRI~~~L~~~~~~v~vr~VR~VAP~k~m~ci 420 (437)
..+++.|... ...+.++..+.....|...
T Consensus 93 ----~~Vr~~L~~a--GF~v~~~~g~g~Kr~~~~a 121 (124)
T PF05430_consen 93 ----GAVRRALQQA--GFEVEKVPGFGRKREMLRA 121 (124)
T ss_dssp ----HHHHHHHHHC--TEEEEEEE-STTSSEEEEE
T ss_pred ----HHHHHHHHHc--CCEEEEcCCCCCcchheEE
Confidence 2255666543 3556777777666666654
No 340
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=47.59 E-value=1.1e+02 Score=32.10 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=24.6
Q ss_pred CccchhHHHHhc----cCCEEEEEeCCHHHHHHHHH
Q 045638 272 AGVGPISIPAAK----IVKRVYANDLNPYAVDYLER 303 (437)
Q Consensus 272 AGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~ 303 (437)
-|.|+.+.++|. .|..|+++|.|+..++.++.
T Consensus 6 IGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 6 IGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNK 41 (411)
T ss_pred ECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhc
Confidence 366777666654 57899999999999987653
No 341
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=47.50 E-value=60 Score=33.82 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=48.4
Q ss_pred cCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCc
Q 045638 271 FAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN 346 (437)
Q Consensus 271 FAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~ 346 (437)
.||.|.++..+|+ .|..|+.+|.||+.++.++++. .+.++.+|+.+.- . +.......+|.|++-.+.
T Consensus 5 IiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~-~-l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 5 IVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPD-V-LREAGAEDADLLIAVTDS 75 (453)
T ss_pred EECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHH-H-HHHcCCCcCCEEEEecCC
Confidence 3677999998887 3679999999999888776421 3778889986532 1 111113468888888777
Q ss_pred ChH
Q 045638 347 DAT 349 (437)
Q Consensus 347 ~a~ 349 (437)
...
T Consensus 76 ~~~ 78 (453)
T PRK09496 76 DET 78 (453)
T ss_pred hHH
Confidence 443
No 342
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=47.32 E-value=2.3e+02 Score=26.62 Aligned_cols=77 Identities=16% Similarity=0.027 Sum_probs=47.6
Q ss_pred ceEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~ 336 (437)
.+++-.+ |.|.++..++ ++|++|+.++.+++..+.+...++.++- ++.++.+|..+.- ...++. ...+.
T Consensus 12 k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 88 (256)
T PRK06124 12 QVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG--AAEALAFDIADEEAVAAAFARIDAEHGR 88 (256)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 4455444 4555555544 4689999999999888877777765543 4778888865421 111110 01245
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|.+.
T Consensus 89 id~vi~~a 96 (256)
T PRK06124 89 LDILVNNV 96 (256)
T ss_pred CCEEEECC
Confidence 78888764
No 343
>PRK07831 short chain dehydrogenase; Provisional
Probab=47.12 E-value=2e+02 Score=27.27 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=46.8
Q ss_pred ceEEeecC---ccchh-HHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCc
Q 045638 265 QMTGDVFA---GVGPI-SIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFA---GvG~F-aI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~ 336 (437)
.+++-.|+ |+|.- +..++.+|+.|+..|.+++.++...+.++.+--..++.++.+|..+. +..+++. ...+.
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 97 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERLGR 97 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45555553 34433 22344568899999999988877776665421112578888887542 1221110 11246
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|.|.
T Consensus 98 id~li~~a 105 (262)
T PRK07831 98 LDVLVNNA 105 (262)
T ss_pred CCEEEECC
Confidence 78888775
No 344
>PRK07576 short chain dehydrogenase; Provisional
Probab=47.10 E-value=1.6e+02 Score=28.28 Aligned_cols=77 Identities=18% Similarity=0.079 Sum_probs=44.3
Q ss_pred ceEEeecCccchhHHHH----hccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~a----Akkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~ 336 (437)
.+++-.+ |.|.++..+ +.+|+.|++++.+++..+.+...+..-+ .++.++..|+.+. +...++. ...+.
T Consensus 10 k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 10 KNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 3455555 445555544 4468899999999987766655444322 2467788887532 1111111 01245
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|.|.
T Consensus 87 iD~vi~~a 94 (264)
T PRK07576 87 IDVLVSGA 94 (264)
T ss_pred CCEEEECC
Confidence 79988664
No 345
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=46.97 E-value=1.6e+02 Score=29.02 Aligned_cols=87 Identities=7% Similarity=-0.027 Sum_probs=51.2
Q ss_pred ceEEeec--CccchhHHHHhc-cCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-EccHHHHHHHHHHhhcCCcccE
Q 045638 265 QMTGDVF--AGVGPISIPAAK-IVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVF-NMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlF--AGvG~FaI~aAk-kg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi-~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
++|+=.+ .|+|.+++.+|+ .|+ +|++++.+++-.+.+++.. +.+ .+-.. ..|..+.+.... +..+|.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~-~vi~~~~~~~~~~i~~~~----~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFD-AAINYKTDNVAERLRELC----PEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCc-EEEECCCCCHHHHHHHHC----CCCceE
Confidence 4566555 478888888888 487 8999999998777776532 443 22111 123333333321 245887
Q ss_pred EEEcCCcChHHHHHHHHHHhcCC
Q 045638 340 VVMNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 340 VImnpP~~a~eFLdaa~~llk~~ 362 (437)
|+ |.-... . +..+.++++++
T Consensus 228 vi-d~~g~~-~-~~~~~~~l~~~ 247 (345)
T cd08293 228 YF-DNVGGE-I-SDTVISQMNEN 247 (345)
T ss_pred EE-ECCCcH-H-HHHHHHHhccC
Confidence 76 433222 2 46667777765
No 346
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=46.86 E-value=1.9e+02 Score=29.00 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=52.6
Q ss_pred ceEEeecCc-cchhHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCccc---E
Q 045638 265 QMTGDVFAG-VGPISIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKIT---Q 339 (437)
Q Consensus 265 e~VLDlFAG-vG~FaI~aAk-kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD---~ 339 (437)
++|+-.+|| +|.+++.+|+ .|++|+++|.+++-.+.+++ -+.+.-+..-..|..++.....+...+..+| -
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 566666653 3555566666 47799999999998877753 2433112111222222222111100122344 1
Q ss_pred EEEcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 340 VVMNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 340 VImnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
++.+... ....+..+..+++.+ |.+-++.+.
T Consensus 244 ~v~d~~g-~~~~~~~~~~~l~~~--------G~iv~~G~~ 274 (349)
T TIGR03201 244 KIFECSG-SKPGQESALSLLSHG--------GTLVVVGYT 274 (349)
T ss_pred EEEECCC-ChHHHHHHHHHHhcC--------CeEEEECcC
Confidence 3444443 235666677778775 466555553
No 347
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.85 E-value=55 Score=31.39 Aligned_cols=95 Identities=16% Similarity=0.078 Sum_probs=57.2
Q ss_pred cceEEeecCc-cchhHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCC--cEEEEEccHHHHHHHHHHhhcCCccc
Q 045638 264 VQMTGDVFAG-VGPISIPAAKIV--KRVYANDLNPYAVDYLERNSVLNKLEK--KIEVFNMDGRRFIDAMFASQKAHKIT 338 (437)
Q Consensus 264 ~e~VLDlFAG-vG~FaI~aAkkg--~~V~A~DlNP~Ave~L~~NaklNkv~~--~V~vi~gDa~~~l~~~~~~~~~~~fD 338 (437)
+..||.+|+| +|.-++.+|.+. ..|+--|-|..|++.+++-...|.... .+.+..-+ ......+....+||
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~----~~~aqsq~eq~tFD 105 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL----IWGAQSQQEQHTFD 105 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH----HhhhHHHHhhCccc
Confidence 3578999988 566667777763 489999999999999999888885542 12111111 11111111245799
Q ss_pred EEEEcCCcCh----HHHHHHHHHHhcCC
Q 045638 339 QVVMNLPNDA----TEFLDAFRGIYRDR 362 (437)
Q Consensus 339 ~VImnpP~~a----~eFLdaa~~llk~~ 362 (437)
.|+.--=-+- ....+.+..++++.
T Consensus 106 iIlaADClFfdE~h~sLvdtIk~lL~p~ 133 (201)
T KOG3201|consen 106 IILAADCLFFDEHHESLVDTIKSLLRPS 133 (201)
T ss_pred EEEeccchhHHHHHHHHHHHHHHHhCcc
Confidence 8876432211 23455555666654
No 348
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=46.78 E-value=1.1e+02 Score=30.59 Aligned_cols=73 Identities=18% Similarity=0.135 Sum_probs=51.4
Q ss_pred Cccc-hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEccHHHH--HHHHHHh--hc-CCcccEEEEcC
Q 045638 272 AGVG-PISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKL-EKKIEVFNMDGRRF--IDAMFAS--QK-AHKITQVVMNL 344 (437)
Q Consensus 272 AGvG-~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv-~~~V~vi~gDa~~~--l~~~~~~--~~-~~~fD~VImnp 344 (437)
.|+| ..+..+|+.|++|+..+.+++..+....-+...+. ..++..+.+|..+. ...+... +. .+++|.+|-|.
T Consensus 18 ~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~~GkidiLvnna 97 (270)
T KOG0725|consen 18 SGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKFFGKIDILVNNA 97 (270)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHhCCCCCEEEEcC
Confidence 3566 67778889999999999999999888887776665 35788899998532 2221110 12 46788888664
No 349
>PRK07024 short chain dehydrogenase; Provisional
Probab=46.57 E-value=1.1e+02 Score=29.10 Aligned_cols=73 Identities=14% Similarity=-0.021 Sum_probs=42.7
Q ss_pred EEeecCccchhHHHH----hccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCccc
Q 045638 267 TGDVFAGVGPISIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKIT 338 (437)
Q Consensus 267 VLDlFAGvG~FaI~a----Akkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~fD 338 (437)
|+=.| |+|.++..+ +++|++|+.++.|++..+.+...+...+ ++.++.+|..+. +.+.... ...+.+|
T Consensus 5 vlItG-as~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 5 VFITG-ASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA---RVSVYAADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred EEEEc-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC---eeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 33333 355555554 4568899999999988776655443221 578888887542 1221110 0124579
Q ss_pred EEEEc
Q 045638 339 QVVMN 343 (437)
Q Consensus 339 ~VImn 343 (437)
.+|.|
T Consensus 81 ~lv~~ 85 (257)
T PRK07024 81 VVIAN 85 (257)
T ss_pred EEEEC
Confidence 88876
No 350
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=46.26 E-value=2.2e+02 Score=28.05 Aligned_cols=89 Identities=20% Similarity=0.168 Sum_probs=49.8
Q ss_pred ceEEeecCc-cchhHHHHhcc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAG-VGPISIPAAKI-VK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAG-vG~FaI~aAkk-g~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|+..++| +|.+++.+|+. |. .|++++.++...+.+++ ++...-+..-+.+..+.+.... ....+|.++
T Consensus 169 ~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~---~~~~~d~vl 241 (347)
T cd05278 169 STVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT---GGRGVDCVI 241 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc---CCCCCcEEE
Confidence 456665554 67777878874 75 89999999877776654 2332111111222323333221 234688777
Q ss_pred EcCCcChHHHHHHHHHHhcCC
Q 045638 342 MNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~ 362 (437)
-.-. ....+..+.+.++.+
T Consensus 242 d~~g--~~~~~~~~~~~l~~~ 260 (347)
T cd05278 242 EAVG--FEETFEQAVKVVRPG 260 (347)
T ss_pred EccC--CHHHHHHHHHHhhcC
Confidence 5432 224666666777654
No 351
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=45.79 E-value=1.9e+02 Score=29.05 Aligned_cols=98 Identities=13% Similarity=0.091 Sum_probs=53.0
Q ss_pred ceEEeecC-ccchhHHHHhc-cCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFA-GVGPISIPAAK-IVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFA-GvG~FaI~aAk-kg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|+-.+| ++|.+++.+|+ .|+ +|+++|.++.-.+.+++ .+.+.-+..-..|..+.+.... ....+|.|+
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~---~~~g~d~vi 250 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT---GGFGADVVI 250 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh---CCCCCCEEE
Confidence 45665544 24555566666 477 59999999998888753 3433111111223333333222 123578666
Q ss_pred EcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 342 MNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
|.-.. ...++.+..+++.+ |++-++...
T Consensus 251 -d~~g~-~~~~~~~~~~~~~~--------G~iv~~G~~ 278 (358)
T TIGR03451 251 -DAVGR-PETYKQAFYARDLA--------GTVVLVGVP 278 (358)
T ss_pred -ECCCC-HHHHHHHHHHhccC--------CEEEEECCC
Confidence 44332 23456667777765 455555543
No 352
>PRK06139 short chain dehydrogenase; Provisional
Probab=45.72 E-value=1.8e+02 Score=29.47 Aligned_cols=76 Identities=14% Similarity=0.010 Sum_probs=47.7
Q ss_pred eEEeecCccchhHHH----HhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~----aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~f 337 (437)
+|+-.|| +|.++.. ++++|++|+.++.|++..+.+.+.++..+. ++.++..|..+. +..+... ...+.+
T Consensus 9 ~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 85 (330)
T PRK06139 9 VVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA--EVLVVPTDVTDADQVKALATQAASFGGRI 85 (330)
T ss_pred EEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 4444443 4444444 445789999999999999888888876554 477777776532 2222110 112468
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.|-
T Consensus 86 D~lVnnA 92 (330)
T PRK06139 86 DVWVNNV 92 (330)
T ss_pred CEEEECC
Confidence 9988774
No 353
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=45.56 E-value=1.2e+02 Score=29.92 Aligned_cols=86 Identities=12% Similarity=-0.003 Sum_probs=49.6
Q ss_pred ceEEeecC-ccchhHHHHhc-cCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFA-GVGPISIPAAK-IVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFA-GvG~FaI~aAk-kg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
+.|+=++| |+|.+++.+|+ .|+ .|+++|.+++-++.+... . +++ ..+. ....+|.|+
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i~--~~~~--------~~~g~Dvvi 205 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VLD--PEKD--------PRRDYRAIY 205 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------ccC--hhhc--------cCCCCCEEE
Confidence 44555554 47777777777 477 578889998776554421 1 111 1110 023478666
Q ss_pred EcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 342 MNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
-.-. ....++.+.++++++ |.+-++.+..
T Consensus 206 d~~G--~~~~~~~~~~~l~~~--------G~iv~~G~~~ 234 (308)
T TIGR01202 206 DASG--DPSLIDTLVRRLAKG--------GEIVLAGFYT 234 (308)
T ss_pred ECCC--CHHHHHHHHHhhhcC--------cEEEEEeecC
Confidence 4433 234567777888876 5677776643
No 354
>PRK06125 short chain dehydrogenase; Provisional
Probab=44.77 E-value=1.5e+02 Score=28.02 Aligned_cols=75 Identities=16% Similarity=-0.011 Sum_probs=46.4
Q ss_pred eEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHhhcCCcccE
Q 045638 266 MTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKITQ 339 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~~~~~~fD~ 339 (437)
+++=.+ |+|.++..++ +.|+.|++++.+++..+.+...++... ..++.++..|..+. +..... ..+.+|.
T Consensus 9 ~vlItG-~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~--~~g~id~ 84 (259)
T PRK06125 9 RVLITG-ASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAA--EAGDIDI 84 (259)
T ss_pred EEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHH--HhCCCCE
Confidence 444444 4555665544 468899999999988877776665432 22577788886542 222222 1246898
Q ss_pred EEEcC
Q 045638 340 VVMNL 344 (437)
Q Consensus 340 VImnp 344 (437)
+|.|.
T Consensus 85 lv~~a 89 (259)
T PRK06125 85 LVNNA 89 (259)
T ss_pred EEECC
Confidence 88774
No 355
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=44.56 E-value=1.1e+02 Score=29.60 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=51.2
Q ss_pred CccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHhhcCCcccEEEEcCC
Q 045638 272 AGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKITQVVMNLP 345 (437)
Q Consensus 272 AGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~~~~~~fD~VImnpP 345 (437)
.|-|.|+..+|+ .|..|+++|.+++.++..... .+ ....+++|+.+- +.++ .-..+|.++..-.
T Consensus 6 iG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~----~~--~~~~v~gd~t~~~~L~~a----gi~~aD~vva~t~ 75 (225)
T COG0569 6 IGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD----EL--DTHVVIGDATDEDVLEEA----GIDDADAVVAATG 75 (225)
T ss_pred ECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh----hc--ceEEEEecCCCHHHHHhc----CCCcCCEEEEeeC
Confidence 577889988887 477999999999998663221 12 367888888653 3322 2356899998888
Q ss_pred cChHHHHHHH
Q 045638 346 NDATEFLDAF 355 (437)
Q Consensus 346 ~~a~eFLdaa 355 (437)
......+-+.
T Consensus 76 ~d~~N~i~~~ 85 (225)
T COG0569 76 NDEVNSVLAL 85 (225)
T ss_pred CCHHHHHHHH
Confidence 7665554443
No 356
>PRK05599 hypothetical protein; Provisional
Probab=44.06 E-value=1.6e+02 Score=27.90 Aligned_cols=74 Identities=15% Similarity=0.075 Sum_probs=45.7
Q ss_pred EEeecCccchhHHHHhc---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHHHhhcCCcc
Q 045638 267 TGDVFAGVGPISIPAAK---IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF------IDAMFASQKAHKI 337 (437)
Q Consensus 267 VLDlFAGvG~FaI~aAk---kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~------l~~~~~~~~~~~f 337 (437)
|+-.|++ +.++..+|+ +|.+|+..+.+++..+.+.+.++..+-. .+.++.+|+.+. +....+ ..+..
T Consensus 3 vlItGas-~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~--~~g~i 78 (246)
T PRK05599 3 ILILGGT-SDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGAT-SVHVLSFDAQDLDTHRELVKQTQE--LAGEI 78 (246)
T ss_pred EEEEeCc-cHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEcccCCHHHHHHHHHHHHH--hcCCC
Confidence 4444443 344444443 4889999999999988887777655432 477888886553 222111 13468
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.|.
T Consensus 79 d~lv~na 85 (246)
T PRK05599 79 SLAVVAF 85 (246)
T ss_pred CEEEEec
Confidence 9888664
No 357
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=43.85 E-value=1.1e+02 Score=34.34 Aligned_cols=78 Identities=14% Similarity=0.043 Sum_probs=50.0
Q ss_pred ccceEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCC-------CCcEEEEEccHHHHHHHHHHh
Q 045638 263 FVQMTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKL-------EKKIEVFNMDGRRFIDAMFAS 331 (437)
Q Consensus 263 F~e~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv-------~~~V~vi~gDa~~~l~~~~~~ 331 (437)
-+.+|+-.| |+|.+|..+++ +|..|++++.|++..+.+..++..+++ ..++.++.+|+.+.- .+..
T Consensus 79 ~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e-sI~~- 155 (576)
T PLN03209 79 DEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD-QIGP- 155 (576)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH-HHHH-
Confidence 345555544 56767666554 588999999999988777766654332 135888999987632 1111
Q ss_pred hcCCcccEEEEcC
Q 045638 332 QKAHKITQVVMNL 344 (437)
Q Consensus 332 ~~~~~fD~VImnp 344 (437)
.-+.+|.||.+.
T Consensus 156 -aLggiDiVVn~A 167 (576)
T PLN03209 156 -ALGNASVVICCI 167 (576)
T ss_pred -HhcCCCEEEEcc
Confidence 123578888775
No 358
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=43.61 E-value=87 Score=28.34 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=39.0
Q ss_pred cCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCc
Q 045638 271 FAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN 346 (437)
Q Consensus 271 FAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~ 346 (437)
|-|.|..+-++|+ .|..|++.|.+|+..+.+.+. + + ....+..++.. ..|.|+.-+|.
T Consensus 6 ~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g----~-~~~~s~~e~~~---------~~dvvi~~v~~ 67 (163)
T PF03446_consen 6 FIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----G----A-EVADSPAEAAE---------QADVVILCVPD 67 (163)
T ss_dssp EE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----T----E-EEESSHHHHHH---------HBSEEEE-SSS
T ss_pred EEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----h----h-hhhhhhhhHhh---------cccceEeeccc
Confidence 3477888877776 478999999999988877653 1 2 23456666653 25888888887
No 359
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=43.23 E-value=25 Score=36.95 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=29.5
Q ss_pred ceEEeecC-ccchhHHHHhcc-CC-EEEEEeCCHHHHHHHHH
Q 045638 265 QMTGDVFA-GVGPISIPAAKI-VK-RVYANDLNPYAVDYLER 303 (437)
Q Consensus 265 e~VLDlFA-GvG~FaI~aAkk-g~-~V~A~DlNP~Ave~L~~ 303 (437)
+.|.-.++ |+|--+|..|+. |+ +++|+|+||+-.+++++
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 56666555 377777777764 66 99999999999998864
No 360
>PRK06914 short chain dehydrogenase; Provisional
Probab=43.17 E-value=58 Score=31.25 Aligned_cols=77 Identities=18% Similarity=0.097 Sum_probs=48.4
Q ss_pred eEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+++-.| |+|.++..++ ++|+.|++++-+++..+.+...++..+...++.++.+|..+.- .. +.. ...+.+
T Consensus 5 ~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~~i 82 (280)
T PRK06914 5 IAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIGRI 82 (280)
T ss_pred EEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcCCe
Confidence 344444 4555555544 4688999999999888877766655454446888999876532 11 110 012457
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.||.+.
T Consensus 83 d~vv~~a 89 (280)
T PRK06914 83 DLLVNNA 89 (280)
T ss_pred eEEEECC
Confidence 8888774
No 361
>PRK07102 short chain dehydrogenase; Provisional
Probab=42.62 E-value=59 Score=30.46 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=47.6
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHhhcCCcccE
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFASQKAHKITQ 339 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~~~~~~fD~ 339 (437)
+|+-.| |+|.++..+++ +|++|++++.+++..+.+..++..+.- .++.++.+|..+.- ...... ....+|.
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~-~~~~~d~ 79 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGA-VAVSTHELDILDTASHAAFLDS-LPALPDI 79 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHH-HhhcCCE
Confidence 344334 56666666554 588999999999888777666655432 36888999876532 122111 1124688
Q ss_pred EEEcC
Q 045638 340 VVMNL 344 (437)
Q Consensus 340 VImnp 344 (437)
+|.|.
T Consensus 80 vv~~a 84 (243)
T PRK07102 80 VLIAV 84 (243)
T ss_pred EEECC
Confidence 88764
No 362
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=42.58 E-value=37 Score=34.26 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=30.9
Q ss_pred eEEeecCccc--hhHHHHhc--c-------CCEEEEEeCCHHHHHHHHHH
Q 045638 266 MTGDVFAGVG--PISIPAAK--I-------VKRVYANDLNPYAVDYLERN 304 (437)
Q Consensus 266 ~VLDlFAGvG--~FaI~aAk--k-------g~~V~A~DlNP~Ave~L~~N 304 (437)
+|.-++|++| |.||.++- . ..+|+|.||+..+++.++..
T Consensus 99 rIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 99 RIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred EEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 5889999999 67766553 1 24899999999999988754
No 363
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=42.46 E-value=60 Score=35.48 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=47.9
Q ss_pred CccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcC
Q 045638 272 AGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPND 347 (437)
Q Consensus 272 AGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~ 347 (437)
||-|.++-.+|+ +|..|+.+|.||+.++.+++ - ...++.||+.+.- .+++-.-..+|.++..-+.+
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~----g~~~i~GD~~~~~--~L~~a~i~~a~~viv~~~~~ 492 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R----GIRAVLGNAANEE--IMQLAHLDCARWLLLTIPNG 492 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C----CCeEEEcCCCCHH--HHHhcCccccCEEEEEcCCh
Confidence 788899888887 36789999999998887753 1 3678999987631 12111234688888877765
Q ss_pred hH
Q 045638 348 AT 349 (437)
Q Consensus 348 a~ 349 (437)
..
T Consensus 493 ~~ 494 (558)
T PRK10669 493 YE 494 (558)
T ss_pred HH
Confidence 43
No 364
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.46 E-value=1.8e+02 Score=29.81 Aligned_cols=58 Identities=17% Similarity=0.062 Sum_probs=42.2
Q ss_pred eEEeecCccchh-HHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHH
Q 045638 266 MTGDVFAGVGPI-SIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 323 (437)
Q Consensus 266 ~VLDlFAGvG~F-aI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~ 323 (437)
+|-..-+|+|.= +-.+|.+|++|+-.--|.+..+.+.+-+....-..++.++..|..+
T Consensus 39 vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLss 97 (314)
T KOG1208|consen 39 LVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSS 97 (314)
T ss_pred EEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCC
Confidence 455666777754 3456668999999999997777777777764444578999999644
No 365
>PRK10818 cell division inhibitor MinD; Provisional
Probab=41.96 E-value=86 Score=30.35 Aligned_cols=18 Identities=17% Similarity=-0.007 Sum_probs=13.9
Q ss_pred HHHhccCCEEEEEeCCHH
Q 045638 279 IPAAKIVKRVYANDLNPY 296 (437)
Q Consensus 279 I~aAkkg~~V~A~DlNP~ 296 (437)
..+|++|.+|..+|.+|.
T Consensus 25 ~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 25 TGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred HHHHHCCCeEEEEECCCC
Confidence 335567889999999984
No 366
>PRK05876 short chain dehydrogenase; Provisional
Probab=41.84 E-value=2.3e+02 Score=27.52 Aligned_cols=76 Identities=12% Similarity=-0.012 Sum_probs=44.9
Q ss_pred eEEeecCccchhHHH----HhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~----aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+++--|+ +|.++.. ++++|++|+..|.++...+.+...++..+. ++.++..|..+.- ...... ...+.+
T Consensus 8 ~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 84 (275)
T PRK05876 8 GAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRLLGHV 84 (275)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4444443 4444444 445688999999999888776665554443 5778888875421 111110 012457
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|-|.
T Consensus 85 d~li~nA 91 (275)
T PRK05876 85 DVVFSNA 91 (275)
T ss_pred CEEEECC
Confidence 8888764
No 367
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=41.71 E-value=1.8e+02 Score=27.75 Aligned_cols=78 Identities=22% Similarity=0.096 Sum_probs=46.6
Q ss_pred ceEEeecC--ccc-hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 265 QMTGDVFA--GVG-PISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 265 e~VLDlFA--GvG-~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
.+++-.++ |+| .++-.++.+|++|+..+.+++..+.+..+.+..+. ++.++.+|..+.- ...+.. ..-+.+
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 88 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI--EAHGYVCDVTDEDGVQAMVSQIEKEVGVI 88 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 34444443 333 23334455788999999999988888777765432 5788888875432 111110 012458
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.+.
T Consensus 89 d~li~~a 95 (265)
T PRK07097 89 DILVNNA 95 (265)
T ss_pred CEEEECC
Confidence 9888664
No 368
>PRK09291 short chain dehydrogenase; Provisional
Probab=41.10 E-value=1.4e+02 Score=28.01 Aligned_cols=71 Identities=14% Similarity=-0.024 Sum_probs=46.0
Q ss_pred eEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHhhcCCcccE
Q 045638 266 MTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFASQKAHKITQ 339 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~~~~~~fD~ 339 (437)
+|+-.| |+|.++..++ ++|+.|++.+.++...+.+....+..+. ++.++.+|..+.. .... ...+|.
T Consensus 4 ~vlVtG-asg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~----~~~id~ 76 (257)
T PRK09291 4 TILITG-AGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAA----EWDVDV 76 (257)
T ss_pred EEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHh----cCCCCE
Confidence 345444 4566665554 4688999999999887777666554443 4778888876532 1111 236899
Q ss_pred EEEc
Q 045638 340 VVMN 343 (437)
Q Consensus 340 VImn 343 (437)
||.|
T Consensus 77 vi~~ 80 (257)
T PRK09291 77 LLNN 80 (257)
T ss_pred EEEC
Confidence 8886
No 369
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=41.01 E-value=1.4e+02 Score=30.49 Aligned_cols=91 Identities=14% Similarity=0.033 Sum_probs=61.2
Q ss_pred ceEEeecCccchhHHHHhcc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH-HHHhhcCCcccEE
Q 045638 265 QMTGDVFAGVGPISIPAAKI-V--KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDA-MFASQKAHKITQV 340 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g--~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~-~~~~~~~~~fD~V 340 (437)
..||=++|+.|+---..+.- | .-|||+|.++++=..|..-++ +-+ ||.+|--||+.--+. ++ -.-+|.|
T Consensus 158 sKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk--kRt-NiiPIiEDArhP~KYRml----VgmVDvI 230 (317)
T KOG1596|consen 158 SKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK--KRT-NIIPIIEDARHPAKYRML----VGMVDVI 230 (317)
T ss_pred ceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh--ccC-CceeeeccCCCchheeee----eeeEEEE
Confidence 57999999999876666653 2 279999999999888865443 334 788999999864221 11 2357999
Q ss_pred EEcCCc--ChHHHHHHHHHHhcCC
Q 045638 341 VMNLPN--DATEFLDAFRGIYRDR 362 (437)
Q Consensus 341 ImnpP~--~a~eFLdaa~~llk~~ 362 (437)
+.|.|. .+.-..-.+.-.|+++
T Consensus 231 FaDvaqpdq~RivaLNA~~FLk~g 254 (317)
T KOG1596|consen 231 FADVAQPDQARIVALNAQYFLKNG 254 (317)
T ss_pred eccCCCchhhhhhhhhhhhhhccC
Confidence 999665 3333333345556665
No 370
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=40.81 E-value=3.5e+02 Score=26.58 Aligned_cols=86 Identities=12% Similarity=0.060 Sum_probs=51.3
Q ss_pred ceEEeec--CccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc--cHHHHHHHHHHhhcCCcccE
Q 045638 265 QMTGDVF--AGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNM--DGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlF--AGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~g--Da~~~l~~~~~~~~~~~fD~ 339 (437)
++|+=.+ .|+|.+++.+|+. |++|++.+.+++-.+.+++ .+.+ .+--... +..+.+... .+..+|.
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~~----~~~gvdv 210 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD-VAFNYKTVKSLEETLKKA----SPDGYDC 210 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC-EEEeccccccHHHHHHHh----CCCCeEE
Confidence 6777666 3688888888884 7899999999988877743 3543 2211111 222333221 1235786
Q ss_pred EEEcCCcChHHHHHHHHHHhcCC
Q 045638 340 VVMNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 340 VImnpP~~a~eFLdaa~~llk~~ 362 (437)
|+ |.-. .. .++.+..+++++
T Consensus 211 v~-d~~G-~~-~~~~~~~~l~~~ 230 (325)
T TIGR02825 211 YF-DNVG-GE-FSNTVIGQMKKF 230 (325)
T ss_pred EE-ECCC-HH-HHHHHHHHhCcC
Confidence 66 4333 22 346677777765
No 371
>PRK06720 hypothetical protein; Provisional
Probab=40.60 E-value=2.9e+02 Score=25.35 Aligned_cols=78 Identities=12% Similarity=0.041 Sum_probs=43.4
Q ss_pred ceEEeecCcc--c-hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 265 QMTGDVFAGV--G-PISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 265 e~VLDlFAGv--G-~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
.+++-.|++. | .++..+++.|..|+.+|.++...+.+.+.+..-+ ..+.++..|..+.- ...... ..-+.+
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~i 94 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG--GEALFVSYDMEKQGDWQRVISITLNAFSRI 94 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4555555443 2 2333344578899999999887766655554222 24667788864321 111110 012457
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.|-
T Consensus 95 DilVnnA 101 (169)
T PRK06720 95 DMLFQNA 101 (169)
T ss_pred CEEEECC
Confidence 8888774
No 372
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.53 E-value=30 Score=36.18 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=24.7
Q ss_pred ceEEeecCc-cchhHHHHhc-cCC-EEEEEeCCHHHHHHHHH
Q 045638 265 QMTGDVFAG-VGPISIPAAK-IVK-RVYANDLNPYAVDYLER 303 (437)
Q Consensus 265 e~VLDlFAG-vG~FaI~aAk-kg~-~V~A~DlNP~Ave~L~~ 303 (437)
++|.-.+.| +|...+.-|+ +|+ +++++|+||+=++.+++
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 444444333 3444444444 466 99999999999988754
No 373
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.35 E-value=56 Score=31.81 Aligned_cols=51 Identities=24% Similarity=0.135 Sum_probs=38.0
Q ss_pred eecCccch-hHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH
Q 045638 269 DVFAGVGP-ISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF 324 (437)
Q Consensus 269 DlFAGvG~-FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~ 324 (437)
-.|+|+|- ....+|+.|++|+|+--||.-+..|.+-. +..|.++++|...+
T Consensus 14 gagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~-----p~~I~Pi~~Dls~w 65 (245)
T KOG1207|consen 14 GAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKET-----PSLIIPIVGDLSAW 65 (245)
T ss_pred cccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhC-----CcceeeeEecccHH
Confidence 35677774 55677788999999999998887775422 22489999997664
No 374
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=40.20 E-value=48 Score=27.13 Aligned_cols=27 Identities=37% Similarity=0.421 Sum_probs=17.7
Q ss_pred ecCccchh------HHHHhccCCEEEEEeCCHH
Q 045638 270 VFAGVGPI------SIPAAKIVKRVYANDLNPY 296 (437)
Q Consensus 270 lFAGvG~F------aI~aAkkg~~V~A~DlNP~ 296 (437)
.-.|+|-= +..++++|.+|..+|.+|.
T Consensus 7 ~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 7 QKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred CCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 33466633 3344456778999999987
No 375
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=39.81 E-value=55 Score=36.60 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=44.1
Q ss_pred CccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCc
Q 045638 272 AGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPN 346 (437)
Q Consensus 272 AGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~ 346 (437)
||-|.++-..++ .|..++++|.||+.++.+++ . ...++.||+.+.- .+.+-.-.++|.+|.-.+.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~--~L~~agi~~A~~vvv~~~d 474 (621)
T PRK03562 406 AGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----F----GMKVFYGDATRMD--LLESAGAAKAEVLINAIDD 474 (621)
T ss_pred EecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----c----CCeEEEEeCCCHH--HHHhcCCCcCCEEEEEeCC
Confidence 777888887776 36689999999999988864 1 3568999987642 1211123457776655544
No 376
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.53 E-value=27 Score=37.19 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=60.5
Q ss_pred ceEEeecCccchhHHHHhc--cC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAK--IV-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk--kg-~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
..|.|++|-.|.=++.+|. +. .+++|.|..++=+++++.-++.-|++ .++...+|.... .... .-.....++
T Consensus 215 ~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t-~~~~---~~~~v~~iL 289 (413)
T KOG2360|consen 215 SRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNT-ATPE---KFRDVTYIL 289 (413)
T ss_pred CceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCC-CCcc---cccceeEEE
Confidence 8999999999999998886 22 38999999999999999999999987 688888887664 1100 012356789
Q ss_pred EcCCc
Q 045638 342 MNLPN 346 (437)
Q Consensus 342 mnpP~ 346 (437)
.||+-
T Consensus 290 ~Dpsc 294 (413)
T KOG2360|consen 290 VDPSC 294 (413)
T ss_pred eCCCC
Confidence 99884
No 377
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=38.96 E-value=1.7e+02 Score=28.89 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=20.3
Q ss_pred hhHHHHhccCCEEEEEeCCHHHHHHHHH
Q 045638 276 PISIPAAKIVKRVYANDLNPYAVDYLER 303 (437)
Q Consensus 276 ~FaI~aAkkg~~V~A~DlNP~Ave~L~~ 303 (437)
.++..++++|..|+++|.+++..+.+..
T Consensus 14 sla~~L~~~g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 14 SLGLDLRSLGHTVYGVSRRESTCERAIE 41 (279)
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 3444444567799999999998877643
No 378
>PRK05866 short chain dehydrogenase; Provisional
Probab=38.71 E-value=3.1e+02 Score=26.94 Aligned_cols=78 Identities=14% Similarity=-0.021 Sum_probs=47.6
Q ss_pred cceEEeecCccchhHHH----HhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCC
Q 045638 264 VQMTGDVFAGVGPISIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 335 (437)
Q Consensus 264 ~e~VLDlFAGvG~FaI~----aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~ 335 (437)
+.+|+-.|+ +|.++.. ++++|+.|++++.|++..+.+.+.+...+. .+.++.+|..+. +...... ...+
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG--DAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 355665554 4444444 445688999999999888777766653332 477888886542 2222210 0124
Q ss_pred cccEEEEcC
Q 045638 336 KITQVVMNL 344 (437)
Q Consensus 336 ~fD~VImnp 344 (437)
.+|.+|.|.
T Consensus 117 ~id~li~~A 125 (293)
T PRK05866 117 GVDILINNA 125 (293)
T ss_pred CCCEEEECC
Confidence 689988874
No 379
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=38.66 E-value=39 Score=34.05 Aligned_cols=67 Identities=25% Similarity=0.259 Sum_probs=48.3
Q ss_pred ceEEeecCccchhHHHHhcc--------CC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHH-----HHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAKI--------VK---RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR-----FIDAM 328 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--------g~---~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~-----~l~~~ 328 (437)
.+|+|++|-.|..+-.++++ +. +++|+|+.|-|= ++ .|..+++|... .+-+.
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-----------I~-GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-----------IE-GVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-----------cC-ceEEeecccCCHhHHHHHHHH
Confidence 78999999999999998874 22 399999998542 44 47778888543 22233
Q ss_pred HHhhcCCcccEEEEc-CCc
Q 045638 329 FASQKAHKITQVVMN-LPN 346 (437)
Q Consensus 329 ~~~~~~~~fD~VImn-pP~ 346 (437)
+ .+.+.|.||+| -|.
T Consensus 111 f---ggekAdlVvcDGAPD 126 (294)
T KOG1099|consen 111 F---GGEKADLVVCDGAPD 126 (294)
T ss_pred h---CCCCccEEEeCCCCC
Confidence 3 24679999998 453
No 380
>PRK08251 short chain dehydrogenase; Provisional
Probab=38.12 E-value=2.5e+02 Score=26.14 Aligned_cols=78 Identities=12% Similarity=0.013 Sum_probs=48.5
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+|+-.| |+|.++..+|+ .|++|+..+.++...+.+...+....-..++.++.+|..+.- ...+.. ...+.+
T Consensus 4 ~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 82 (248)
T PRK08251 4 KILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGGL 82 (248)
T ss_pred EEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 455444 56777666554 588999999999988877766654322236888888876532 111110 012457
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.|.
T Consensus 83 d~vi~~a 89 (248)
T PRK08251 83 DRVIVNA 89 (248)
T ss_pred CEEEECC
Confidence 8888774
No 381
>PRK07478 short chain dehydrogenase; Provisional
Probab=38.05 E-value=3.4e+02 Score=25.50 Aligned_cols=74 Identities=12% Similarity=-0.036 Sum_probs=46.7
Q ss_pred eEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHHHhhcCC
Q 045638 266 MTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF------IDAMFASQKAH 335 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~------l~~~~~~~~~~ 335 (437)
+++=.| |+|.++..++ +.|++|+..+.++...+.+...++..+ .++.++.+|..+. +....+ ..+
T Consensus 8 ~~lItG-as~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~--~~~ 82 (254)
T PRK07478 8 VAIITG-ASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVE--RFG 82 (254)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH--hcC
Confidence 444333 4455555554 468899999999998888777666544 2577888886543 222111 124
Q ss_pred cccEEEEcC
Q 045638 336 KITQVVMNL 344 (437)
Q Consensus 336 ~fD~VImnp 344 (437)
.+|.+|.|-
T Consensus 83 ~id~li~~a 91 (254)
T PRK07478 83 GLDIAFNNA 91 (254)
T ss_pred CCCEEEECC
Confidence 689888764
No 382
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=37.94 E-value=36 Score=30.70 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=15.9
Q ss_pred hHHHHhccCCEEEEEeCCHHH
Q 045638 277 ISIPAAKIVKRVYANDLNPYA 297 (437)
Q Consensus 277 FaI~aAkkg~~V~A~DlNP~A 297 (437)
+|..+|+.|.+|.-+|.+|..
T Consensus 20 LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 20 LALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred HHHHHHHcCCcEEEEeCCCCC
Confidence 344455678899999999876
No 383
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=37.88 E-value=83 Score=30.66 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=48.3
Q ss_pred ceEEeecCccchhHHHHhc------cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHhhcCCc
Q 045638 265 QMTGDVFAGVGPISIPAAK------IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFASQKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk------kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~~~~~~ 336 (437)
++|+.+|.--|.=++..|+ ..++|+++|++........ ++..-+.++|++++||..+.- .+.........
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--HhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 7889999888888877665 2359999999543331111 111233468999999987532 11000001234
Q ss_pred ccEEEEcCCc---ChHHHHHHHHHHhcCC
Q 045638 337 ITQVVMNLPN---DATEFLDAFRGIYRDR 362 (437)
Q Consensus 337 fD~VImnpP~---~a~eFLdaa~~llk~~ 362 (437)
...||.|-=+ ....-|.....++++|
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~G 140 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSPG 140 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--TT
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCCC
Confidence 5688888764 3455566677777765
No 384
>PRK08339 short chain dehydrogenase; Provisional
Probab=37.79 E-value=1.1e+02 Score=29.54 Aligned_cols=78 Identities=6% Similarity=-0.052 Sum_probs=46.4
Q ss_pred ceEEeecCccchhHHH----HhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh-hcCCcc
Q 045638 265 QMTGDVFAGVGPISIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS-QKAHKI 337 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~----aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~-~~~~~f 337 (437)
.+++-.|+ +|.++.. +++.|++|+.++.|++..+.+.+.++... ..++.++.+|+.+.- ..+... ...+.+
T Consensus 9 k~~lItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i 86 (263)
T PRK08339 9 KLAFTTAS-SKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGEP 86 (263)
T ss_pred CEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence 34454443 3444444 44568999999999998887777665421 225788888876431 111110 012458
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.|.
T Consensus 87 D~lv~na 93 (263)
T PRK08339 87 DIFFFST 93 (263)
T ss_pred cEEEECC
Confidence 8888764
No 385
>PRK06194 hypothetical protein; Provisional
Probab=37.36 E-value=2.6e+02 Score=26.76 Aligned_cols=76 Identities=9% Similarity=0.024 Sum_probs=45.0
Q ss_pred eEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~f 337 (437)
+||=.| |+|.++..++ ++|++|+.+|.++...+.+...+...+. ++.++.+|+.+. +...... ...+.+
T Consensus 8 ~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g~i 84 (287)
T PRK06194 8 VAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA--EVLGVRTDVSDAAQVEALADAALERFGAV 84 (287)
T ss_pred EEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 455333 4565555544 4688999999998877666555544332 578889997642 2222210 012357
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.||-|.
T Consensus 85 d~vi~~A 91 (287)
T PRK06194 85 HLLFNNA 91 (287)
T ss_pred CEEEECC
Confidence 8877664
No 386
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=36.75 E-value=1.2e+02 Score=31.86 Aligned_cols=93 Identities=14% Similarity=0.017 Sum_probs=67.1
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE--
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM-- 342 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm-- 342 (437)
...+|+|+|+|..+=.+.++--.|-+++.....+-....+.. -+ |+-+-+|.++-++ +.|.|+|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P---------~~daI~mkW 244 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP---------KGDAIWMKW 244 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceecccccccCC---------CcCeEEEEe
Confidence 789999999999998888854468888888887777776664 33 5667788876542 3455554
Q ss_pred ---cCCc-ChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 343 ---NLPN-DATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 343 ---npP~-~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
+.+. ...+||......+.++ |.|-+-+..
T Consensus 245 iLhdwtDedcvkiLknC~~sL~~~--------GkIiv~E~V 277 (342)
T KOG3178|consen 245 ILHDWTDEDCVKILKNCKKSLPPG--------GKIIVVENV 277 (342)
T ss_pred ecccCChHHHHHHHHHHHHhCCCC--------CEEEEEecc
Confidence 5555 3467888877777775 677777774
No 387
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=36.56 E-value=1.1e+02 Score=28.76 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=16.0
Q ss_pred hHHHHhccCCEEEEEeCCHHH
Q 045638 277 ISIPAAKIVKRVYANDLNPYA 297 (437)
Q Consensus 277 FaI~aAkkg~~V~A~DlNP~A 297 (437)
+|..+|+.|.+|..+|.+|.+
T Consensus 22 la~~la~~g~~VlliD~D~q~ 42 (246)
T TIGR03371 22 LASALKLLGEPVLAIDLDPQN 42 (246)
T ss_pred HHHHHHhCCCcEEEEeCCCcc
Confidence 344456678899999999865
No 388
>PRK07791 short chain dehydrogenase; Provisional
Probab=36.52 E-value=2.7e+02 Score=27.22 Aligned_cols=75 Identities=20% Similarity=0.043 Sum_probs=43.2
Q ss_pred ceEEeecCccchhHHH----HhccCCEEEEEeCCH---------HHHHHHHHHHHHcCCCCcEEEEEccHHHH------H
Q 045638 265 QMTGDVFAGVGPISIP----AAKIVKRVYANDLNP---------YAVDYLERNSVLNKLEKKIEVFNMDGRRF------I 325 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~----aAkkg~~V~A~DlNP---------~Ave~L~~NaklNkv~~~V~vi~gDa~~~------l 325 (437)
.+++-.|+ .|.++.. +++.|++|+.++.+. +..+.+...++..+. ++.++..|..+. +
T Consensus 7 k~~lITGa-s~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 7 RVVIVTGA-GGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG--EAVANGDDIADWDGAANLV 83 (286)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC--ceEEEeCCCCCHHHHHHHH
Confidence 34555554 3444444 445789999998875 556555555544332 577788887542 2
Q ss_pred HHHHHhhcCCcccEEEEcC
Q 045638 326 DAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 326 ~~~~~~~~~~~fD~VImnp 344 (437)
....+ .-+.+|.+|.|.
T Consensus 84 ~~~~~--~~g~id~lv~nA 100 (286)
T PRK07791 84 DAAVE--TFGGLDVLVNNA 100 (286)
T ss_pred HHHHH--hcCCCCEEEECC
Confidence 22221 124689888763
No 389
>PRK05650 short chain dehydrogenase; Provisional
Probab=36.37 E-value=2.3e+02 Score=26.98 Aligned_cols=75 Identities=15% Similarity=-0.078 Sum_probs=45.7
Q ss_pred EEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCccc
Q 045638 267 TGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKIT 338 (437)
Q Consensus 267 VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~fD 338 (437)
|+-.| |+|.++..++ ++|.+|++.+.++...+.+...++..+- ++.++.+|..+.- ...... .....+|
T Consensus 3 vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 3 VMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG--DGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 44333 4555555544 4688999999999888777766665432 5778888875421 111110 0124589
Q ss_pred EEEEcC
Q 045638 339 QVVMNL 344 (437)
Q Consensus 339 ~VImnp 344 (437)
.+|.|.
T Consensus 80 ~lI~~a 85 (270)
T PRK05650 80 VIVNNA 85 (270)
T ss_pred EEEECC
Confidence 888774
No 390
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=36.26 E-value=3.5e+02 Score=24.95 Aligned_cols=88 Identities=17% Similarity=0.090 Sum_probs=51.3
Q ss_pred ceEEeecCc-cchhHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAG-VGPISIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAG-vG~FaI~aAk-kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+.|+..++| +|...+.+|+ .|.+|++.+.+++..+.++.. +...-+.....+....+. .. ....+|.++-
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~-~~---~~~~~d~vi~ 207 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELR-LT---GGGGADVVID 207 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHH-Hh---cCCCCCEEEE
Confidence 678888777 5777777776 478999999999888777532 222111111122222221 11 2456899887
Q ss_pred cCCcChHHHHHHHHHHhcCC
Q 045638 343 NLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 343 npP~~a~eFLdaa~~llk~~ 362 (437)
.-+. ...+..+...++++
T Consensus 208 ~~~~--~~~~~~~~~~l~~~ 225 (271)
T cd05188 208 AVGG--PETLAQALRLLRPG 225 (271)
T ss_pred CCCC--HHHHHHHHHhcccC
Confidence 6553 13455566666654
No 391
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=36.17 E-value=2.9e+02 Score=23.92 Aligned_cols=71 Identities=13% Similarity=0.025 Sum_probs=46.0
Q ss_pred cCccchhHHHHhc----cCC-EEEEEeCC--HHHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHHHhhcCCcc
Q 045638 271 FAGVGPISIPAAK----IVK-RVYANDLN--PYAVDYLERNSVLNKLEKKIEVFNMDGRRF------IDAMFASQKAHKI 337 (437)
Q Consensus 271 FAGvG~FaI~aAk----kg~-~V~A~DlN--P~Ave~L~~NaklNkv~~~V~vi~gDa~~~------l~~~~~~~~~~~f 337 (437)
..|.|.++..+|+ +|+ .|+.+.-+ ....+.+...++..+ .++.++..|..+. +..... ....+
T Consensus 6 tGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~--~~~~l 81 (167)
T PF00106_consen 6 TGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIK--RFGPL 81 (167)
T ss_dssp ETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHH--HHSSE
T ss_pred ECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccc--ccccc
Confidence 3355666666554 555 88999998 677777777777555 3799999986432 222211 23568
Q ss_pred cEEEEcCC
Q 045638 338 TQVVMNLP 345 (437)
Q Consensus 338 D~VImnpP 345 (437)
|.+|.|..
T Consensus 82 d~li~~ag 89 (167)
T PF00106_consen 82 DILINNAG 89 (167)
T ss_dssp SEEEEECS
T ss_pred cccccccc
Confidence 88888754
No 392
>PRK08303 short chain dehydrogenase; Provisional
Probab=35.86 E-value=3e+02 Score=27.49 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=43.2
Q ss_pred ceEEeecCccchhHHHHh----ccCCEEEEEeCCH----------HHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHH
Q 045638 265 QMTGDVFAGVGPISIPAA----KIVKRVYANDLNP----------YAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAM 328 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP----------~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~ 328 (437)
.+++-.|++ +.++..+| +.|++|+.++.|. +.++.+.+.++.++ .++.++.+|+.+.- ..+
T Consensus 9 k~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 9 KVALVAGAT-RGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHH
Confidence 455656643 44555544 4688999999873 44555555444433 24677888865431 111
Q ss_pred HHh--hcCCcccEEEEcC
Q 045638 329 FAS--QKAHKITQVVMNL 344 (437)
Q Consensus 329 ~~~--~~~~~fD~VImnp 344 (437)
... ..-+.+|.+|.|.
T Consensus 86 ~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 86 VERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHcCCccEEEECC
Confidence 110 0124689888876
No 393
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=35.67 E-value=2.4e+02 Score=28.85 Aligned_cols=88 Identities=15% Similarity=0.035 Sum_probs=51.2
Q ss_pred ceEEeec--CccchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVF--AGVGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlF--AGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++||=-+ .|+|.|++.+||. |+.|++.--+++-.++++ ..+-+.-+.....|..+-++++. .+..+|. |
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t---~g~gvDv-v 215 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK----ELGADHVINYREEDFVEQVRELT---GGKGVDV-V 215 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHH----hcCCCEEEcCCcccHHHHHHHHc---CCCCceE-E
Confidence 6666666 5799999999996 667778778887666443 23433223344455555444433 2335774 5
Q ss_pred EcCCcChHHHHHHHHHHhcCC
Q 045638 342 MNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~ 362 (437)
.|+.. . +.+......++++
T Consensus 216 ~D~vG-~-~~~~~~l~~l~~~ 234 (326)
T COG0604 216 LDTVG-G-DTFAASLAALAPG 234 (326)
T ss_pred EECCC-H-HHHHHHHHHhccC
Confidence 56554 2 2333355556554
No 394
>PRK07041 short chain dehydrogenase; Provisional
Probab=35.54 E-value=1.9e+02 Score=26.56 Aligned_cols=67 Identities=21% Similarity=0.148 Sum_probs=42.4
Q ss_pred ccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHhhcCCcccEEEEcC
Q 045638 273 GVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 273 GvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~~~~~~fD~VImnp 344 (437)
|+|.++..++ ++|+.|++++.+++..+.+...++. ..++.++.+|..+. +...++. -+.+|.+|.+.
T Consensus 5 as~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~--~~~id~li~~a 77 (230)
T PRK07041 5 GSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG---GAPVRTAALDITDEAAVDAFFAE--AGPFDHVVITA 77 (230)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHh--cCCCCEEEECC
Confidence 3455555444 4688999999999887776665542 23577888886543 2222321 24579888875
No 395
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=35.30 E-value=93 Score=32.73 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=17.0
Q ss_pred Cccch------hHHHHhccCCEEEEEeC-CHHH
Q 045638 272 AGVGP------ISIPAAKIVKRVYANDL-NPYA 297 (437)
Q Consensus 272 AGvG~------FaI~aAkkg~~V~A~Dl-NP~A 297 (437)
-|+|- +|..+|++|.+|..+|+ +|.+
T Consensus 116 GGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~ 148 (388)
T PRK13705 116 GGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQG 148 (388)
T ss_pred CCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCC
Confidence 56662 33345567888999995 7644
No 396
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=35.22 E-value=2.4e+02 Score=27.71 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=25.0
Q ss_pred CccchhHHHHhcc-CCEEEEEeCCHHHHHHHHH
Q 045638 272 AGVGPISIPAAKI-VKRVYANDLNPYAVDYLER 303 (437)
Q Consensus 272 AGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~ 303 (437)
.++|.+++.+|+. |++|++++.+++-.+.+++
T Consensus 154 g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~ 186 (324)
T cd08291 154 SALGRMLVRLCKADGIKVINIVRRKEQVDLLKK 186 (324)
T ss_pred cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4567777777774 7899999999988887765
No 397
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.02 E-value=1.1e+02 Score=32.11 Aligned_cols=65 Identities=15% Similarity=-0.033 Sum_probs=37.5
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCH-HHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEE
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNP-YAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP-~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V 340 (437)
+|+=+| .|..++.+|+ .|+.|+++|.++ ..++...+.+...+ ++++.+|..+-. ...+|.|
T Consensus 7 ~v~iiG--~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~--------~~~~d~v 72 (450)
T PRK14106 7 KVLVVG--AGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG----IELVLGEYPEEF--------LEGVDLV 72 (450)
T ss_pred EEEEEC--CCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC----CEEEeCCcchhH--------hhcCCEE
Confidence 454444 4446666554 589999999986 44433333343333 446666655421 1347888
Q ss_pred EEcC
Q 045638 341 VMNL 344 (437)
Q Consensus 341 Imnp 344 (437)
|.++
T Consensus 73 v~~~ 76 (450)
T PRK14106 73 VVSP 76 (450)
T ss_pred EECC
Confidence 8764
No 398
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.92 E-value=2.3e+02 Score=26.93 Aligned_cols=75 Identities=13% Similarity=0.043 Sum_probs=41.4
Q ss_pred ceEEeecCc----cc-hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCC
Q 045638 265 QMTGDVFAG----VG-PISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 335 (437)
Q Consensus 265 e~VLDlFAG----vG-~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~ 335 (437)
.+++-.|++ +| .++..+++.|++|+..+.|....+.+.+. +. .++.++..|..+. +..+++. ..-+
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~---~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 82 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL---VD--EEDLLVECDVASDESIERAFATIKERVG 82 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh---cc--CceeEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 456666654 44 34445556799999998885433333221 22 2577888887542 1221111 0124
Q ss_pred cccEEEEcC
Q 045638 336 KITQVVMNL 344 (437)
Q Consensus 336 ~fD~VImnp 344 (437)
.+|.+|.|.
T Consensus 83 ~iD~lv~nA 91 (252)
T PRK06079 83 KIDGIVHAI 91 (252)
T ss_pred CCCEEEEcc
Confidence 689888663
No 399
>PRK06949 short chain dehydrogenase; Provisional
Probab=34.45 E-value=2.9e+02 Score=25.79 Aligned_cols=77 Identities=16% Similarity=0.060 Sum_probs=46.3
Q ss_pred ceEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~ 336 (437)
.+|+-.+ |+|.++..+++ .|++|++.+.+++.++.+...++..+ .++.++.+|..+. +...... ...+.
T Consensus 10 k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK06949 10 KVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEAGT 86 (258)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 3444444 55666665554 58899999999998887777654333 2577888886432 1111110 01245
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|.+.
T Consensus 87 ~d~li~~a 94 (258)
T PRK06949 87 IDILVNNS 94 (258)
T ss_pred CCEEEECC
Confidence 78887764
No 400
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=34.39 E-value=43 Score=35.67 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=27.9
Q ss_pred cCccchhHHHHhcc---CCEEEEEeCCHHHHHHHHH
Q 045638 271 FAGVGPISIPAAKI---VKRVYANDLNPYAVDYLER 303 (437)
Q Consensus 271 FAGvG~FaI~aAkk---g~~V~A~DlNP~Ave~L~~ 303 (437)
+=|.|+.++++|.. +..|+++|+|+..++.++.
T Consensus 11 vIGlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~ 46 (425)
T PRK15182 11 IIGLGYVGLPLAVEFGKSRQVVGFDVNKKRILELKN 46 (425)
T ss_pred EECcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHHC
Confidence 34999999998873 5689999999999998873
No 401
>PRK07326 short chain dehydrogenase; Provisional
Probab=34.39 E-value=1.1e+02 Score=28.40 Aligned_cols=74 Identities=9% Similarity=-0.039 Sum_probs=46.5
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+|+-.| |+|.++..+++ +|.+|++++.||.....+...+... .++.++.+|..+.- ...++. ...+.+
T Consensus 8 ~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T PRK07326 8 VALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFGGL 83 (237)
T ss_pred EEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 455555 57777777665 5889999999998887776666533 35788888865431 111110 012357
Q ss_pred cEEEEc
Q 045638 338 TQVVMN 343 (437)
Q Consensus 338 D~VImn 343 (437)
|.||-+
T Consensus 84 d~vi~~ 89 (237)
T PRK07326 84 DVLIAN 89 (237)
T ss_pred CEEEEC
Confidence 887765
No 402
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=34.16 E-value=4.4e+02 Score=25.90 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=50.2
Q ss_pred ceEEeecCc-cchhHHHHhcc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFAG-VGPISIPAAKI-VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFAG-vG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
+.||..++| +|.+++.+|+. |.+|+++.-+++-.+.++. .+.+.-+.....+..+.+.... ....+|.++.
T Consensus 161 ~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---~~~~vd~vld 233 (337)
T cd08261 161 DTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT---DGEGADVVID 233 (337)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh---CCCCCCEEEE
Confidence 456665555 57788888874 8899999989888877743 1232111111223333333222 2345888776
Q ss_pred cCCcChHHHHHHHHHHhcCC
Q 045638 343 NLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 343 npP~~a~eFLdaa~~llk~~ 362 (437)
.- .....+..+.+.++..
T Consensus 234 ~~--g~~~~~~~~~~~l~~~ 251 (337)
T cd08261 234 AT--GNPASMEEAVELVAHG 251 (337)
T ss_pred CC--CCHHHHHHHHHHHhcC
Confidence 52 1234456666666654
No 403
>PRK07109 short chain dehydrogenase; Provisional
Probab=33.94 E-value=3.8e+02 Score=27.04 Aligned_cols=76 Identities=11% Similarity=-0.104 Sum_probs=46.9
Q ss_pred eEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+|+-.| |+|.++..++ ++|++|+.++.+++.++.+...++..+. ++.++.+|..+.- ...... ..-+.+
T Consensus 10 ~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~~~~g~i 86 (334)
T PRK07109 10 VVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG--EALAVVADVADAEAVQAAADRAEEELGPI 86 (334)
T ss_pred EEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence 344444 4455555544 4688999999999998888777765443 5778888865421 111110 012468
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.|-
T Consensus 87 D~lInnA 93 (334)
T PRK07109 87 DTWVNNA 93 (334)
T ss_pred CEEEECC
Confidence 9888764
No 404
>PRK08267 short chain dehydrogenase; Provisional
Probab=33.86 E-value=1e+02 Score=29.21 Aligned_cols=73 Identities=18% Similarity=-0.007 Sum_probs=45.4
Q ss_pred EEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh---hcCCcc
Q 045638 267 TGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS---QKAHKI 337 (437)
Q Consensus 267 VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~---~~~~~f 337 (437)
++-.| |+|.++..++ ++|++|++++.+++..+.+...+. ..++.++.+|..+.- .+.... ...+.+
T Consensus 4 vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 4 IFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 44455 4455555554 468899999999998877766543 235888888876532 111111 013467
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.+.
T Consensus 79 d~vi~~a 85 (260)
T PRK08267 79 DVLFNNA 85 (260)
T ss_pred CEEEECC
Confidence 9888764
No 405
>PRK07890 short chain dehydrogenase; Provisional
Probab=33.54 E-value=3.8e+02 Score=25.02 Aligned_cols=76 Identities=9% Similarity=-0.088 Sum_probs=46.5
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~f 337 (437)
+|+-. .|+|.++..+|+ +|+.|+.++.++...+.+...++..+ .++.++..|..+. +...+.. ..-+.+
T Consensus 7 ~vlIt-Ga~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 83 (258)
T PRK07890 7 VVVVS-GVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFGRV 83 (258)
T ss_pred EEEEE-CCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcCCc
Confidence 44433 456666666554 68899999999988777666554433 3578888887542 1111111 012457
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.+.
T Consensus 84 d~vi~~a 90 (258)
T PRK07890 84 DALVNNA 90 (258)
T ss_pred cEEEECC
Confidence 8888764
No 406
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.51 E-value=2.8e+02 Score=26.54 Aligned_cols=75 Identities=13% Similarity=-0.007 Sum_probs=40.5
Q ss_pred ceEEeecCcc-chhHHHHh----ccCCEEEEEeCCH---HHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--h
Q 045638 265 QMTGDVFAGV-GPISIPAA----KIVKRVYANDLNP---YAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--Q 332 (437)
Q Consensus 265 e~VLDlFAGv-G~FaI~aA----kkg~~V~A~DlNP---~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~ 332 (437)
.+++-.|++. +.++..+| +.|++|+..+.+. +.++.+...+ ++ .++.++..|+.+. +....+. .
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~--~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL--EG--QESLLLPCDVTSDEEITACFETIKE 83 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc--CC--CceEEEecCCCCHHHHHHHHHHHHH
Confidence 4677777642 45555444 4688998886653 3444333322 12 3577888887542 1111110 1
Q ss_pred cCCcccEEEEc
Q 045638 333 KAHKITQVVMN 343 (437)
Q Consensus 333 ~~~~fD~VImn 343 (437)
.-+++|.+|.|
T Consensus 84 ~~g~ld~lv~n 94 (257)
T PRK08594 84 EVGVIHGVAHC 94 (257)
T ss_pred hCCCccEEEEC
Confidence 13568988765
No 407
>PRK09186 flagellin modification protein A; Provisional
Probab=33.47 E-value=4e+02 Score=24.82 Aligned_cols=78 Identities=19% Similarity=0.080 Sum_probs=46.7
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~f 337 (437)
+|+-.| |+|.++..+|+ .|.+|+..+.+++..+.+...+....-...+.++.+|..+. +..+++. ...+.+
T Consensus 6 ~vlItG-as~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~i 84 (256)
T PRK09186 6 TILITG-AGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYGKI 84 (256)
T ss_pred EEEEEC-CCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcCCc
Confidence 444444 34556655554 58899999999998887777665432222466777886542 2222211 112458
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.|.
T Consensus 85 d~vi~~A 91 (256)
T PRK09186 85 DGAVNCA 91 (256)
T ss_pred cEEEECC
Confidence 9998774
No 408
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=33.37 E-value=3.2e+02 Score=28.60 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=58.8
Q ss_pred ceEEeecCccchhHHHHhccCC--EEEEEeCCHHHHHHHHHHHH--HcCCC-CcEEEEEccHHHHHHHHHHhhcCCcccE
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK--RVYANDLNPYAVDYLERNSV--LNKLE-KKIEVFNMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~--~V~A~DlNP~Ave~L~~Nak--lNkv~-~~V~vi~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
+.|+-+|-|-|++--..+++.+ .+.-+|++...++.-++=.. .++.+ .+|.+.-||+..|++... .+.||.
T Consensus 123 kkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~----~~~~dV 198 (337)
T KOG1562|consen 123 KKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK----ENPFDV 198 (337)
T ss_pred CeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc----cCCceE
Confidence 7899999999999988888744 78889998887776655332 34554 379999999999997652 467999
Q ss_pred EEEcC
Q 045638 340 VVMNL 344 (437)
Q Consensus 340 VImnp 344 (437)
|+.|-
T Consensus 199 ii~ds 203 (337)
T KOG1562|consen 199 IITDS 203 (337)
T ss_pred EEEec
Confidence 99773
No 409
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=33.20 E-value=9.1 Score=37.88 Aligned_cols=100 Identities=20% Similarity=0.281 Sum_probs=59.7
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE-Ec
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV-MN 343 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI-mn 343 (437)
.++||+|||-|-++..++-.-..|||-|++-.+...|+. -+. ||-. +.++.. .+-++|.|. +|
T Consensus 114 ~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k----k~y--nVl~----~~ew~~------t~~k~dli~clN 177 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK----KNY--NVLT----EIEWLQ------TDVKLDLILCLN 177 (288)
T ss_pred eeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh----cCC--ceee----ehhhhh------cCceeehHHHHH
Confidence 689999999999999888765579999999888776653 111 2211 112221 122344432 12
Q ss_pred C---CcChHHHHHHHHHHhcCCCCC---CCCCccEEEEEeccCC
Q 045638 344 L---PNDATEFLDAFRGIYRDRPED---VKFTFPKTHVYGFSKA 381 (437)
Q Consensus 344 p---P~~a~eFLdaa~~llk~~~~~---~~~~~p~IHvY~F~k~ 381 (437)
+ =.+.-..|.-+..++.+. .+ -..-+|..|+-++...
T Consensus 178 lLDRc~~p~kLL~Di~~vl~ps-ngrvivaLVLP~~hYVE~N~~ 220 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAPS-NGRVIVALVLPYMHYVETNTS 220 (288)
T ss_pred HHHhhcChHHHHHHHHHHhccC-CCcEEEEEEecccceeecCCC
Confidence 1 223456677777777663 11 0123578899887643
No 410
>PRK08643 acetoin reductase; Validated
Probab=33.02 E-value=3.3e+02 Score=25.57 Aligned_cols=70 Identities=16% Similarity=-0.012 Sum_probs=44.1
Q ss_pred ccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCcccEEEEcC
Q 045638 273 GVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKITQVVMNL 344 (437)
Q Consensus 273 GvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~fD~VImnp 344 (437)
|+|.++..++ ++|++|+.++.+++..+.+...+...+ .++.++.+|..+. +...+.. ...+.+|.+|.|-
T Consensus 10 as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 87 (256)
T PRK08643 10 AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFGDLNVVVNNA 87 (256)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4555665544 468899999999988877777665433 2577888887542 1221111 0124589888774
No 411
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.98 E-value=3.7e+02 Score=26.17 Aligned_cols=77 Identities=14% Similarity=0.015 Sum_probs=40.8
Q ss_pred ceEEeecC----ccc-hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCC
Q 045638 265 QMTGDVFA----GVG-PISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAH 335 (437)
Q Consensus 265 e~VLDlFA----GvG-~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~ 335 (437)
.+|+-.|+ |+| .++..+++.|++|+..+.|...-+.+.+-.+..+ .. .++..|+.+.- ..+.+. ...+
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~~g 82 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKDLG 82 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 45666665 444 2444455679999999999643333333222222 12 46777865531 111111 1135
Q ss_pred cccEEEEcC
Q 045638 336 KITQVVMNL 344 (437)
Q Consensus 336 ~fD~VImnp 344 (437)
.+|.+|.|.
T Consensus 83 ~iDilVnnA 91 (274)
T PRK08415 83 KIDFIVHSV 91 (274)
T ss_pred CCCEEEECC
Confidence 689888663
No 412
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=32.83 E-value=1.4e+02 Score=31.23 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=44.8
Q ss_pred ccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcC--CC-----CcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 273 GVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNK--LE-----KKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 273 GvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNk--v~-----~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
|.|.|+-.+| +.|..|.-+-.+|+.++.+..+ +.|. ++ +++. ...|..+.+ ..+|.|+
T Consensus 8 GaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N~~yLp~i~lp~~l~-at~Dl~~a~---------~~ad~iv 76 (329)
T COG0240 8 GAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-RENPKYLPGILLPPNLK-ATTDLAEAL---------DGADIIV 76 (329)
T ss_pred cCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcCccccCCccCCcccc-cccCHHHHH---------hcCCEEE
Confidence 4455555444 4677999999999999998877 6664 22 2222 223444443 2379999
Q ss_pred EcCCcCh-HHHHHHH
Q 045638 342 MNLPNDA-TEFLDAF 355 (437)
Q Consensus 342 mnpP~~a-~eFLdaa 355 (437)
+..|..+ .+.++..
T Consensus 77 ~avPs~~~r~v~~~l 91 (329)
T COG0240 77 IAVPSQALREVLRQL 91 (329)
T ss_pred EECChHHHHHHHHHH
Confidence 9999854 2444444
No 413
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.75 E-value=3.1e+02 Score=25.40 Aligned_cols=76 Identities=11% Similarity=-0.096 Sum_probs=47.7
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+++-.| |+|.++..+++ +|+.|++++.++...+.+...++..+ .++.++.+|..+.- ...+.. ...+.+
T Consensus 9 ~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 85 (239)
T PRK07666 9 NALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELGSI 85 (239)
T ss_pred EEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence 455555 46777776554 58899999999988777666665433 36888888864421 111110 012357
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.||.+.
T Consensus 86 d~vi~~a 92 (239)
T PRK07666 86 DILINNA 92 (239)
T ss_pred cEEEEcC
Confidence 8888764
No 414
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=32.67 E-value=1.1e+02 Score=28.65 Aligned_cols=73 Identities=19% Similarity=0.002 Sum_probs=47.6
Q ss_pred ecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcccEEE
Q 045638 270 VFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKITQVV 341 (437)
Q Consensus 270 lFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~fD~VI 341 (437)
+..|+|.++..+++ +|.+|++++.++...+.+...++..+. ++.++.+|..+.- ...+.. ...+.+|.||
T Consensus 9 ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi 86 (258)
T PRK12429 9 VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG--KAIGVAMDVTDEEAINAGIDYAVETFGGVDILV 86 (258)
T ss_pred EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 34467888887776 478999999999988877776665443 5888888865421 111110 0123578888
Q ss_pred EcC
Q 045638 342 MNL 344 (437)
Q Consensus 342 mnp 344 (437)
.+-
T Consensus 87 ~~a 89 (258)
T PRK12429 87 NNA 89 (258)
T ss_pred ECC
Confidence 654
No 415
>PRK08703 short chain dehydrogenase; Provisional
Probab=32.49 E-value=2.8e+02 Score=25.81 Aligned_cols=55 Identities=9% Similarity=-0.147 Sum_probs=35.6
Q ss_pred ceEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccH
Q 045638 265 QMTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDG 321 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa 321 (437)
.+|+-.| |+|.++..+++ +|.+|++++.|++..+.+...+...+-. .+.++..|.
T Consensus 7 k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~ 65 (239)
T PRK08703 7 KTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHP-EPFAIRFDL 65 (239)
T ss_pred CEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCC-CcceEEeee
Confidence 3455555 56666666554 5889999999998887777666543322 344555554
No 416
>PRK08589 short chain dehydrogenase; Validated
Probab=32.31 E-value=4.3e+02 Score=25.32 Aligned_cols=75 Identities=15% Similarity=0.009 Sum_probs=42.2
Q ss_pred eEEeecCccchhHHH----HhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~----aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+++-.| |+|.++.. ++++|++|+.++.+ ...+.+...++..+ .++.++..|..+.- ..++.. ...+.+
T Consensus 8 ~vlItG-as~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 83 (272)
T PRK08589 8 VAVITG-ASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFGRV 83 (272)
T ss_pred EEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 444444 34444554 44468999999999 55555555554433 25778888865421 111110 012458
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.|.
T Consensus 84 d~li~~A 90 (272)
T PRK08589 84 DVLFNNA 90 (272)
T ss_pred CEEEECC
Confidence 9888774
No 417
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=32.26 E-value=27 Score=31.00 Aligned_cols=29 Identities=14% Similarity=-0.090 Sum_probs=25.4
Q ss_pred eEEeecCccchhHHHHhccCCEEEEEeCC
Q 045638 266 MTGDVFAGVGPISIPAAKIVKRVYANDLN 294 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAkkg~~V~A~DlN 294 (437)
..+|++||.|-+.--+.+.|..=+++|.-
T Consensus 61 ~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 61 GFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred ceEEccCCchHHHHHHHhCCCCccccccc
Confidence 58999999999999999988877888874
No 418
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.01 E-value=3.7e+02 Score=24.83 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=46.8
Q ss_pred ceEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~ 336 (437)
.+++-.| |.|.++..+++ +|++|+.++.++...+.+.+.++..+ .++.++..|..+. +...... .....
T Consensus 6 ~~~lItG-~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 6 KVIVITG-GAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4555555 35666665554 58899999999987777666665433 2577888886432 2221111 01245
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.||.+.
T Consensus 83 id~vi~~a 90 (253)
T PRK08217 83 LNGLINNA 90 (253)
T ss_pred CCEEEECC
Confidence 79888774
No 419
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.00 E-value=1.2e+02 Score=30.22 Aligned_cols=90 Identities=21% Similarity=0.197 Sum_probs=56.2
Q ss_pred ECcEEEEEeCCCCcccHHHHHHHHHHhcCCCceEEEEccccccccccceeeeccce-eeec-ccccceEEeecCccchhH
Q 045638 201 VGHIAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEGDAY-MCES-LFFVQMTGDVFAGVGPIS 278 (437)
Q Consensus 201 iGdIa~lnl~~e~~p~k~~I~evLl~k~~P~iktVv~K~~~I~gefR~~~levLaG-v~E~-~FF~e~VLDlFAGvG~Fa 278 (437)
+|--.-+|+.-.-....+.|+++|.+. +.+.|+.... ..-|.+.++-..| +.+. .|-.++||-.- --|--+
T Consensus 95 ~~aklEVNLF~RteeRv~~I~e~L~~~---Ga~~vLg~~~---~~~~ip~l~s~R~~v~~~GIy~ADVVLvpL-EDGDRt 167 (256)
T COG1701 95 TGAKLEVNLFYRTEERVRKIAEVLKEH---GAKEVLGTDP---DAARIPGLESERGKVSEEGIYSADVVLVPL-EDGDRT 167 (256)
T ss_pred hCCceEEEeeccCHHHHHHHHHHHHhc---CcceeecCCc---ccccCCCccccccccCcccceeccEEEEec-CCCcHH
Confidence 455566788666667788999998863 4456654321 1145555555555 3333 44346665433 345556
Q ss_pred HHHhccCCEEEEEeCCHHH
Q 045638 279 IPAAKIVKRVYANDLNPYA 297 (437)
Q Consensus 279 I~aAkkg~~V~A~DlNP~A 297 (437)
-.+.+.|++|+++|+||-|
T Consensus 168 eaLv~mGK~ViaIDLNPLS 186 (256)
T COG1701 168 EALVRMGKTVIAIDLNPLS 186 (256)
T ss_pred HHHHHhCCeEEEEeCCccc
Confidence 6666789999999999955
No 420
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=31.82 E-value=62 Score=32.59 Aligned_cols=89 Identities=11% Similarity=0.101 Sum_probs=50.9
Q ss_pred ceEEeecCc-cchhHHHHhcc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEE
Q 045638 265 QMTGDVFAG-VGPISIPAAKI--V-KRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 265 e~VLDlFAG-vG~FaI~aAkk--g-~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~V 340 (437)
++|+-.+|| +|.+++.+|++ | ++|+++|.+++-.+.++. + +. ...+ + +... ...+|.|
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~~---~~~~--~--~~~~-------~~g~d~v 226 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---DE---TYLI--D--DIPE-------DLAVDHA 226 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---Cc---eeeh--h--hhhh-------ccCCcEE
Confidence 567766653 44445555553 4 589999999988887754 1 11 1111 1 1111 1237876
Q ss_pred EEcCCcC-hHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 341 VMNLPND-ATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 341 ImnpP~~-a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
+-.-... ....++.+.++++++ |++.++.+.
T Consensus 227 iD~~G~~~~~~~~~~~~~~l~~~--------G~iv~~G~~ 258 (341)
T cd08237 227 FECVGGRGSQSAINQIIDYIRPQ--------GTIGLMGVS 258 (341)
T ss_pred EECCCCCccHHHHHHHHHhCcCC--------cEEEEEeec
Confidence 6443321 345567777888876 577777764
No 421
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=31.70 E-value=5.2e+02 Score=26.74 Aligned_cols=91 Identities=14% Similarity=0.072 Sum_probs=51.8
Q ss_pred ceEEeec--CccchhHHHHhcc---CC-EEEEEeCCHHHHHHHHHHHH----HcCCCCcEEEEE----ccHHHHHHHHHH
Q 045638 265 QMTGDVF--AGVGPISIPAAKI---VK-RVYANDLNPYAVDYLERNSV----LNKLEKKIEVFN----MDGRRFIDAMFA 330 (437)
Q Consensus 265 e~VLDlF--AGvG~FaI~aAkk---g~-~V~A~DlNP~Ave~L~~Nak----lNkv~~~V~vi~----gDa~~~l~~~~~ 330 (437)
++|+=.+ .|+|.+++.+|+. |+ +|+++|.+++-.+.+++... .++.+ ..+++ .|..+.+..+.
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~~v~~~t- 253 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHATLMELT- 253 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHHHHHHHh-
Confidence 4565554 3578888888875 33 79999999999888876411 01221 12332 13333333322
Q ss_pred hhcCCcccEEEEcCCcChHHHHHHHHHHhcCC
Q 045638 331 SQKAHKITQVVMNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 331 ~~~~~~fD~VImnpP~~a~eFLdaa~~llk~~ 362 (437)
.+..+|.|+..-+. ...+..+.++++++
T Consensus 254 --~g~g~D~vid~~g~--~~~~~~a~~~l~~~ 281 (410)
T cd08238 254 --GGQGFDDVFVFVPV--PELVEEADTLLAPD 281 (410)
T ss_pred --CCCCCCEEEEcCCC--HHHHHHHHHHhccC
Confidence 23458988875432 23455666777654
No 422
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=31.69 E-value=49 Score=30.92 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=15.7
Q ss_pred CCcccEEEEcCCcChHHHH
Q 045638 334 AHKITQVVMNLPNDATEFL 352 (437)
Q Consensus 334 ~~~fD~VImnpP~~a~eFL 352 (437)
.+++|.||+|||..+.+-+
T Consensus 84 ~~~~d~vv~DPPFl~~ec~ 102 (162)
T PF10237_consen 84 KGKFDVVVIDPPFLSEECL 102 (162)
T ss_pred CCCceEEEECCCCCCHHHH
Confidence 3589999999999776665
No 423
>PRK07904 short chain dehydrogenase; Provisional
Probab=31.66 E-value=1.2e+02 Score=29.07 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=46.7
Q ss_pred ceEEeecCccchhHHHHhc----cC-CEEEEEeCCHHH-HHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHHHhh
Q 045638 265 QMTGDVFAGVGPISIPAAK----IV-KRVYANDLNPYA-VDYLERNSVLNKLEKKIEVFNMDGRRF------IDAMFASQ 332 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk----kg-~~V~A~DlNP~A-ve~L~~NaklNkv~~~V~vi~gDa~~~------l~~~~~~~ 332 (437)
.+|+-.|| +|.++..+|+ +| .+|++.+.|+.. .+.+.+.++.++-. +++++.+|..+. +.....
T Consensus 9 ~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~-~v~~~~~D~~~~~~~~~~~~~~~~-- 84 (253)
T PRK07904 9 QTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGAS-SVEVIDFDALDTDSHPKVIDAAFA-- 84 (253)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCC-ceEEEEecCCChHHHHHHHHHHHh--
Confidence 34555554 5666665554 54 799999999875 66666666655432 688888886542 222221
Q ss_pred cCCcccEEEEcC
Q 045638 333 KAHKITQVVMNL 344 (437)
Q Consensus 333 ~~~~fD~VImnp 344 (437)
.+.+|.+|.|.
T Consensus 85 -~g~id~li~~a 95 (253)
T PRK07904 85 -GGDVDVAIVAF 95 (253)
T ss_pred -cCCCCEEEEee
Confidence 24689888765
No 424
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=31.12 E-value=3.2e+02 Score=25.32 Aligned_cols=77 Identities=19% Similarity=0.103 Sum_probs=48.2
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~f 337 (437)
+++-.| |+|.++..+++ +|..|+.++.+++..+.+...++..+ .++.++.+|..+. +..+... ......
T Consensus 5 ~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 81 (250)
T TIGR03206 5 TAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQALGPV 81 (250)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 344444 45666666554 57899999999998888777766543 3588888887542 2221110 012357
Q ss_pred cEEEEcCC
Q 045638 338 TQVVMNLP 345 (437)
Q Consensus 338 D~VImnpP 345 (437)
|.+|.+..
T Consensus 82 d~vi~~ag 89 (250)
T TIGR03206 82 DVLVNNAG 89 (250)
T ss_pred CEEEECCC
Confidence 88887763
No 425
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=31.04 E-value=1.1e+02 Score=31.45 Aligned_cols=70 Identities=23% Similarity=0.260 Sum_probs=56.0
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcC
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnp 344 (437)
-...|+||-.|..+-.+.+++-.|+|+|--|-|-..+. .+.|+-...|++.|-+ ....+|-.|+|.
T Consensus 213 M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~sL~d--------tg~v~h~r~DGfk~~P------~r~~idWmVCDm 278 (358)
T COG2933 213 MWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQSLMD--------TGQVTHLREDGFKFRP------TRSNIDWMVCDM 278 (358)
T ss_pred ceeeecccCCCccchhhhhcceEEEEeccchhhhhhhc--------ccceeeeeccCccccc------CCCCCceEEeeh
Confidence 67899999999999999999999999998876543321 2368888999999854 246789999998
Q ss_pred CcCh
Q 045638 345 PNDA 348 (437)
Q Consensus 345 P~~a 348 (437)
....
T Consensus 279 VEkP 282 (358)
T COG2933 279 VEKP 282 (358)
T ss_pred hcCc
Confidence 6643
No 426
>PRK06197 short chain dehydrogenase; Provisional
Probab=30.95 E-value=5.1e+02 Score=25.32 Aligned_cols=79 Identities=9% Similarity=-0.073 Sum_probs=46.2
Q ss_pred ceEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~ 336 (437)
.+|+-.| |+|.++..+|+ +|++|+.++.+++..+.+.+.+....-..++.++.+|..+.- ..+... ...+.
T Consensus 17 k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~ 95 (306)
T PRK06197 17 RVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYPR 95 (306)
T ss_pred CEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCCC
Confidence 3455444 45666665554 688999999998877666555543211235788888876532 111111 01245
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|.|.
T Consensus 96 iD~li~nA 103 (306)
T PRK06197 96 IDLLINNA 103 (306)
T ss_pred CCEEEECC
Confidence 89888764
No 427
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=30.91 E-value=4e+02 Score=24.99 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=49.0
Q ss_pred ceEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~ 336 (437)
.+|+=.| |.|.++..+++ +|++|+..+.++...+.+...++..+. ++.++.+|..+. +..+++. ...+.
T Consensus 11 k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07523 11 RRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFEAEIGP 87 (255)
T ss_pred CEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 4555555 56777766655 588999999999988877777765443 477888887542 2222211 01245
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|.+.
T Consensus 88 ~d~li~~a 95 (255)
T PRK07523 88 IDILVNNA 95 (255)
T ss_pred CCEEEECC
Confidence 78888765
No 428
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.56 E-value=4.2e+02 Score=26.31 Aligned_cols=40 Identities=18% Similarity=-0.071 Sum_probs=26.6
Q ss_pred eEEeecCccc--hhHHHHhccCCEEEEEeCCHHHHHHHHHHH
Q 045638 266 MTGDVFAGVG--PISIPAAKIVKRVYANDLNPYAVDYLERNS 305 (437)
Q Consensus 266 ~VLDlFAGvG--~FaI~aAkkg~~V~A~DlNP~Ave~L~~Na 305 (437)
.|.=+|+|.= .++..+++.|..|+.+|.|++.++.++..+
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~ 47 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVI 47 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 3444555532 233334456789999999999999888754
No 429
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=30.37 E-value=2.8e+02 Score=22.04 Aligned_cols=66 Identities=21% Similarity=0.353 Sum_probs=46.7
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEc--CCc-ChHHHHHHHHHHh
Q 045638 288 VYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMN--LPN-DATEFLDAFRGIY 359 (437)
Q Consensus 288 V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImn--pP~-~a~eFLdaa~~ll 359 (437)
|.-+|-+|...+.++.-++.+++. .+. ...+..+.+..+. ...+|.|++| .|. .+.+++..++...
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~-~v~-~~~~~~~~~~~~~----~~~~d~iiid~~~~~~~~~~~~~~i~~~~ 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYE-EVT-TASSGEEALELLK----KHPPDLIIIDLELPDGDGLELLEQIRQIN 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEE-EEE-EESSHHHHHHHHH----HSTESEEEEESSSSSSBHHHHHHHHHHHT
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC-EEE-EECCHHHHHHHhc----ccCceEEEEEeeecccccccccccccccc
Confidence 456799999999999999977763 243 5567777665443 2459999999 344 5567777775554
No 430
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=30.33 E-value=29 Score=36.82 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=15.5
Q ss_pred eEEeecCccchhHHHHhc
Q 045638 266 MTGDVFAGVGPISIPAAK 283 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk 283 (437)
.|+|+|||+|+.++.+..
T Consensus 66 ~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 66 TAVDLGCSSGSNTIHIID 83 (386)
T ss_pred eEEEecCCCCccHHHHHH
Confidence 699999999999987643
No 431
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=30.31 E-value=86 Score=35.71 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=34.4
Q ss_pred ceEEeecCcc--chhHHHHhccCCEEEEEeCCHHHHHHHHHHHH
Q 045638 265 QMTGDVFAGV--GPISIPAAKIVKRVYANDLNPYAVDYLERNSV 306 (437)
Q Consensus 265 e~VLDlFAGv--G~FaI~aAkkg~~V~A~DlNP~Ave~L~~Nak 306 (437)
.+|.-+|||+ ..++..+|..|..|+..|.++++++.....++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~ 357 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAA 357 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4688999998 56777788889999999999999987665543
No 432
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.19 E-value=3.8e+02 Score=25.58 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=42.2
Q ss_pred ceEEeecCccc-hhHH----HHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHHHhhc
Q 045638 265 QMTGDVFAGVG-PISI----PAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF------IDAMFASQK 333 (437)
Q Consensus 265 e~VLDlFAGvG-~FaI----~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~------l~~~~~~~~ 333 (437)
.+++--|++.| .++. .+|+.|++|+.++.|+...+.+.+-.+. +. .+.++.+|+.+. +....+ .
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~--~~-~~~~~~~D~~~~~~v~~~~~~~~~--~ 85 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEE--LD-APIFLPLDVREPGQLEAVFARIAE--E 85 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHh--hc-cceEEecCcCCHHHHHHHHHHHHH--H
Confidence 56777776542 4444 4455689999999997654434333222 12 244677786542 222211 1
Q ss_pred CCcccEEEEcC
Q 045638 334 AHKITQVVMNL 344 (437)
Q Consensus 334 ~~~fD~VImnp 344 (437)
.+.+|.+|.|.
T Consensus 86 ~g~ld~lv~nA 96 (258)
T PRK07533 86 WGRLDFLLHSI 96 (258)
T ss_pred cCCCCEEEEcC
Confidence 24689888773
No 433
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=29.98 E-value=67 Score=32.55 Aligned_cols=59 Identities=17% Similarity=-0.004 Sum_probs=35.3
Q ss_pred ceEEeecCccch--hHHHHhcc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH
Q 045638 265 QMTGDVFAGVGP--ISIPAAKI---VKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF 324 (437)
Q Consensus 265 e~VLDlFAGvG~--FaI~aAkk---g~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~ 324 (437)
...||+|||+=. -.-..|+. .++|+-+|.+|-++...+.=+.-|.- +...++.+|.++-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p 133 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDP 133 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-H
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCH
Confidence 579999999642 22234442 57999999999999877766655532 2488999999875
No 434
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=29.50 E-value=1.7e+02 Score=27.64 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=13.8
Q ss_pred HHHhccCCEEEEEeCCHH
Q 045638 279 IPAAKIVKRVYANDLNPY 296 (437)
Q Consensus 279 I~aAkkg~~V~A~DlNP~ 296 (437)
..+|++|.+|..+|.+|.
T Consensus 24 ~~la~~g~~vlliD~D~~ 41 (261)
T TIGR01968 24 TALARLGKKVVLIDADIG 41 (261)
T ss_pred HHHHHcCCeEEEEECCCC
Confidence 344556889999999984
No 435
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=29.50 E-value=1.1e+02 Score=30.42 Aligned_cols=49 Identities=24% Similarity=0.162 Sum_probs=34.3
Q ss_pred ecCccc-hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccH
Q 045638 270 VFAGVG-PISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDG 321 (437)
Q Consensus 270 lFAGvG-~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa 321 (437)
-.+|+| .++..+|++|++|..+|++..+.+....++.-. +....+.+|+
T Consensus 22 g~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~---~~h~aF~~DV 71 (256)
T KOG1200|consen 22 GSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGY---GDHSAFSCDV 71 (256)
T ss_pred CCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCC---Cccceeeecc
Confidence 345566 678889999999999999998777666655431 2344566664
No 436
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=29.47 E-value=1.7e+02 Score=28.13 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=14.0
Q ss_pred HHHHhc-cCCEEEEEeCCHHH
Q 045638 278 SIPAAK-IVKRVYANDLNPYA 297 (437)
Q Consensus 278 aI~aAk-kg~~V~A~DlNP~A 297 (437)
|-.+|+ +|.+|..+|++|.+
T Consensus 24 a~~La~~~~~kVLliDlDpQ~ 44 (259)
T COG1192 24 AAALAKRGGKKVLLIDLDPQG 44 (259)
T ss_pred HHHHHHhcCCcEEEEeCCCcc
Confidence 334553 35799999999963
No 437
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.25 E-value=2.2e+02 Score=29.11 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=51.5
Q ss_pred ceEEeecC--ccc-hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 265 QMTGDVFA--GVG-PISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 265 e~VLDlFA--GvG-~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
.+|+-=|| |+| ..|..+|++|++++-+-...+-++-..+-++...-.+++.++.+|..+.- ...++. ..-+..
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~v 92 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFGRV 92 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcCCC
Confidence 45555555 555 57778889999777777888888888666666654436999999976532 111100 123568
Q ss_pred cEEEEc
Q 045638 338 TQVVMN 343 (437)
Q Consensus 338 D~VImn 343 (437)
|+.|-|
T Consensus 93 DvLVNN 98 (282)
T KOG1205|consen 93 DVLVNN 98 (282)
T ss_pred CEEEec
Confidence 888876
No 438
>PRK07832 short chain dehydrogenase; Provisional
Probab=29.20 E-value=3.4e+02 Score=25.91 Aligned_cols=69 Identities=10% Similarity=-0.009 Sum_probs=40.8
Q ss_pred ccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHHHhhcCCcccEEEE
Q 045638 273 GVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF------IDAMFASQKAHKITQVVM 342 (437)
Q Consensus 273 GvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~------l~~~~~~~~~~~fD~VIm 342 (437)
|+|.++..++ ++|+.|+.++.|++..+.+...++..+-. .+.++.+|..+. ...... ..+.+|.+|.
T Consensus 8 as~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~--~~~~id~lv~ 84 (272)
T PRK07832 8 AASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGT-VPEHRALDISDYDAVAAFAADIHA--AHGSMDVVMN 84 (272)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEeeCCCHHHHHHHHHHHHH--hcCCCCEEEE
Confidence 4556665544 46889999999998877766665533211 244566675432 111111 1245898887
Q ss_pred cC
Q 045638 343 NL 344 (437)
Q Consensus 343 np 344 (437)
+.
T Consensus 85 ~a 86 (272)
T PRK07832 85 IA 86 (272)
T ss_pred CC
Confidence 75
No 439
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=28.87 E-value=3.4e+02 Score=25.50 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=40.4
Q ss_pred CccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcccEEEEc
Q 045638 272 AGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKITQVVMN 343 (437)
Q Consensus 272 AGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~fD~VImn 343 (437)
.|+|.++..+|+ +|++|++++.++...+.+...+ ..++.++.+|..+.- ...++. ...+.+|.+|.+
T Consensus 7 Gasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ 81 (248)
T PRK10538 7 GATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN 81 (248)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 356666666554 5889999999998766554433 125778888875431 111110 012357888865
No 440
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.39 E-value=1.2e+02 Score=30.46 Aligned_cols=41 Identities=17% Similarity=-0.035 Sum_probs=29.7
Q ss_pred eEEeecCcc--chhHHHHhccCCEEEEEeCCHHHHHHHHHHHH
Q 045638 266 MTGDVFAGV--GPISIPAAKIVKRVYANDLNPYAVDYLERNSV 306 (437)
Q Consensus 266 ~VLDlFAGv--G~FaI~aAkkg~~V~A~DlNP~Ave~L~~Nak 306 (437)
+|.-+|+|+ +.++..+|+.|..|+..|.+|++++.+...++
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~ 49 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIE 49 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH
Confidence 456666663 34555566678999999999999988666544
No 441
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=28.32 E-value=5.1e+02 Score=24.47 Aligned_cols=73 Identities=12% Similarity=-0.048 Sum_probs=42.0
Q ss_pred eEEeecCccchhHHH----HhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~----aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~f 337 (437)
+++-.|+ +|.++.. +++.|+.|+.++.+++..+.+..-. ..++.++.+|..+. +...++. ...+.+
T Consensus 8 ~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 81 (263)
T PRK06200 8 VALITGG-GSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQTVDAFGKL 81 (263)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 4555553 3444444 4446889999999998776654422 23577788886542 1111110 112467
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.|.
T Consensus 82 d~li~~a 88 (263)
T PRK06200 82 DCFVGNA 88 (263)
T ss_pred CEEEECC
Confidence 8888663
No 442
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=28.30 E-value=84 Score=33.27 Aligned_cols=38 Identities=26% Similarity=0.191 Sum_probs=25.7
Q ss_pred ceEEeecCccchhHHHHhcc-CCEEEEEeCCHHHHHHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAKI-VKRVYANDLNPYAVDYLER 303 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk-g~~V~A~DlNP~Ave~L~~ 303 (437)
++|+-+- +.|--++.++.. .++|+|||+||.-...++-
T Consensus 37 d~vl~It-SaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleL 75 (380)
T PF11899_consen 37 DRVLTIT-SAGCNALDYLLAGPKRIHAVDLNPAQNALLEL 75 (380)
T ss_pred CeEEEEc-cCCchHHHHHhcCCceEEEEeCCHHHHHHHHH
Confidence 4555553 345555655555 4699999999987776654
No 443
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=28.24 E-value=59 Score=34.25 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=24.8
Q ss_pred ccchhHHHHhc---cCCEEEEEeCCHHHHHHHHH
Q 045638 273 GVGPISIPAAK---IVKRVYANDLNPYAVDYLER 303 (437)
Q Consensus 273 GvG~FaI~aAk---kg~~V~A~DlNP~Ave~L~~ 303 (437)
|.|+.++++|. .|..|+++|+|++.++.++.
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 77777776654 36799999999999988875
No 444
>PRK10904 DNA adenine methylase; Provisional
Probab=27.93 E-value=55 Score=32.61 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=25.9
Q ss_pred ceEEeecCccchhHHHHhccCCEEEEEeCCHHHHH
Q 045638 265 QMTGDVFAGVGPISIPAAKIVKRVYANDLNPYAVD 299 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~~V~A~DlNP~Ave 299 (437)
.+-++.|||-|.+.+.. ....++.||+|++-+.
T Consensus 29 ~~yvEPF~GggaV~l~~--~~~~~ilND~n~~Lin 61 (271)
T PRK10904 29 ECLIEPFVGAGSVFLNT--DFSRYILADINSDLIS 61 (271)
T ss_pred CcEEeccCCcceeeEec--CCCeEEEEeCCHHHHH
Confidence 46899999999988854 2246788999998874
No 445
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=27.83 E-value=1.2e+02 Score=29.92 Aligned_cols=42 Identities=21% Similarity=0.067 Sum_probs=28.2
Q ss_pred eEEeecCcc-c-hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHH
Q 045638 266 MTGDVFAGV-G-PISIPAAKIVKRVYANDLNPYAVDYLERNSVL 307 (437)
Q Consensus 266 ~VLDlFAGv-G-~FaI~aAkkg~~V~A~DlNP~Ave~L~~Nakl 307 (437)
.|.=+|||. | .++..+++.|..|+.+|.|++.++.+++.++.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~ 48 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIES 48 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh
Confidence 355555552 1 34445556788999999999999877665543
No 446
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=27.65 E-value=1.6e+02 Score=27.58 Aligned_cols=76 Identities=16% Similarity=-0.008 Sum_probs=44.8
Q ss_pred eEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+++-.| |+|.++..++ ++|..|++++.+++..+.+.+-++..+ .++.++.+|..+.- ...+.. ...+.+
T Consensus 9 ~vlItG-asg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK13394 9 TAVVTG-AASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERFGSV 85 (262)
T ss_pred EEEEEC-CCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 344333 4455555544 468899999999988777766654433 35778888865421 111110 012357
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.||.+.
T Consensus 86 d~vi~~a 92 (262)
T PRK13394 86 DILVSNA 92 (262)
T ss_pred CEEEECC
Confidence 8877653
No 447
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=27.61 E-value=34 Score=29.16 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=18.4
Q ss_pred cccEEEEcCCcChH------------------HHHHHHHHHh
Q 045638 336 KITQVVMNLPNDAT------------------EFLDAFRGIY 359 (437)
Q Consensus 336 ~fD~VImnpP~~a~------------------eFLdaa~~ll 359 (437)
.||.||-|||+... -|+..+..++
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll 43 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL 43 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh
Confidence 49999999998321 2777887777
No 448
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.58 E-value=4.5e+02 Score=25.44 Aligned_cols=77 Identities=14% Similarity=-0.020 Sum_probs=41.8
Q ss_pred ceEEeecCc----cc-hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCC
Q 045638 265 QMTGDVFAG----VG-PISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 335 (437)
Q Consensus 265 e~VLDlFAG----vG-~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~ 335 (437)
.+++-.|++ +| .++..+|+.|++|+..+.|....+.+.+-.+..+ ....+.+|+.+. +..+++. ...+
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---SDFVLPCDVEDIASVDAVFEALEKKWG 84 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---CceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 456666664 44 4555666789999998887654443333222222 123577786543 1111111 1124
Q ss_pred cccEEEEcC
Q 045638 336 KITQVVMNL 344 (437)
Q Consensus 336 ~fD~VImnp 344 (437)
.+|.+|.|.
T Consensus 85 ~iD~lVnnA 93 (271)
T PRK06505 85 KLDFVVHAI 93 (271)
T ss_pred CCCEEEECC
Confidence 689888663
No 449
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=27.54 E-value=5.5e+02 Score=24.49 Aligned_cols=75 Identities=9% Similarity=-0.057 Sum_probs=45.1
Q ss_pred eEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~f 337 (437)
+++-.| |.|.++..++ +.|++|+.++.+++..+.+.+.++..+ .++.++.+|..+. +...++. ..-+.+
T Consensus 12 ~vlVtG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 88 (278)
T PRK08277 12 VAVITG-GGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILEDFGPC 88 (278)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 344444 4455555544 468899999999988877766665433 2578888887542 1111110 012468
Q ss_pred cEEEEc
Q 045638 338 TQVVMN 343 (437)
Q Consensus 338 D~VImn 343 (437)
|.+|.|
T Consensus 89 d~li~~ 94 (278)
T PRK08277 89 DILING 94 (278)
T ss_pred CEEEEC
Confidence 888876
No 450
>PRK08265 short chain dehydrogenase; Provisional
Probab=27.19 E-value=5e+02 Score=24.67 Aligned_cols=73 Identities=12% Similarity=0.014 Sum_probs=42.4
Q ss_pred eEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+++-.| |+|.++..+| +.|++|+..+.|++..+.+..-+ ..++.++.+|..+.- ...+.. ...+.+
T Consensus 8 ~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 8 VAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred EEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 445444 4455555544 46889999999987665544332 235778888875431 111110 012457
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.|.
T Consensus 82 d~lv~~a 88 (261)
T PRK08265 82 DILVNLA 88 (261)
T ss_pred CEEEECC
Confidence 9888774
No 451
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=27.06 E-value=4.4e+02 Score=24.50 Aligned_cols=76 Identities=17% Similarity=0.002 Sum_probs=45.1
Q ss_pred EEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCccc
Q 045638 267 TGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKIT 338 (437)
Q Consensus 267 VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~fD 338 (437)
++=.+ |.|.++..++ +.|++|+.++.++...+.+...++..+ .++.++.+|..+. +...+.. ...+..|
T Consensus 3 ~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 3 ALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 33344 4566666554 468899999999887776665555443 3578888886432 1111110 0123578
Q ss_pred EEEEcCC
Q 045638 339 QVVMNLP 345 (437)
Q Consensus 339 ~VImnpP 345 (437)
.+|-|..
T Consensus 80 ~vi~~ag 86 (254)
T TIGR02415 80 VMVNNAG 86 (254)
T ss_pred EEEECCC
Confidence 8887753
No 452
>PRK07454 short chain dehydrogenase; Provisional
Probab=26.94 E-value=1.7e+02 Score=27.26 Aligned_cols=76 Identities=11% Similarity=-0.116 Sum_probs=46.8
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+++-.| |+|.++..+++ +|.+|++++.|+...+.+...++. ...++.++.+|..+.- ...+.. +..+..
T Consensus 8 ~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (241)
T PRK07454 8 RALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS--TGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP 84 (241)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 345554 46766666554 688999999999887776665543 2236888899875431 111110 012357
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.+.
T Consensus 85 d~lv~~a 91 (241)
T PRK07454 85 DVLINNA 91 (241)
T ss_pred CEEEECC
Confidence 8888764
No 453
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=26.93 E-value=1.6e+02 Score=27.33 Aligned_cols=76 Identities=14% Similarity=-0.039 Sum_probs=47.5
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~f 337 (437)
+|+-.| |+|.++..+++ +|.+|++++-|+.....+...++.++. ++.++.+|..+. +...+.. ...+.+
T Consensus 8 ~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 84 (251)
T PRK12826 8 VALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG--KARARQVDVRDRAALKAAVAAGVEDFGRL 84 (251)
T ss_pred EEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 455444 46777766554 588999999998877776666654432 488888887542 1222110 012357
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.||.+.
T Consensus 85 d~vi~~a 91 (251)
T PRK12826 85 DILVANA 91 (251)
T ss_pred CEEEECC
Confidence 8888775
No 454
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=26.91 E-value=6.3e+02 Score=25.04 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=47.1
Q ss_pred ceEEeecCc-cchhHHHHhc-cCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAG-VGPISIPAAK-IVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAG-vG~FaI~aAk-kg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
++|+-.++| +|.+++.+|+ +|+ .|+++|.+++..+.++. .+.+.-+..-..+..+.+.... ....+|.++
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~---~~~~~d~vl 240 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT---GGKGVDAVI 240 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh---CCCCCcEEE
Confidence 455555443 5566666666 477 69999999988766653 3443111111123222232222 234588666
Q ss_pred EcCCcChHHHHHHHHHHhcCC
Q 045638 342 MNLPNDATEFLDAFRGIYRDR 362 (437)
Q Consensus 342 mnpP~~a~eFLdaa~~llk~~ 362 (437)
-.-. ....+..+.++++.+
T Consensus 241 d~~g--~~~~~~~~~~~l~~~ 259 (351)
T cd08285 241 IAGG--GQDTFEQALKVLKPG 259 (351)
T ss_pred ECCC--CHHHHHHHHHHhhcC
Confidence 4322 134566667777664
No 455
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=26.68 E-value=73 Score=33.71 Aligned_cols=30 Identities=40% Similarity=0.563 Sum_probs=23.2
Q ss_pred CccchhHHHHhc----cCCEEEEEeCCHHHHHHH
Q 045638 272 AGVGPISIPAAK----IVKRVYANDLNPYAVDYL 301 (437)
Q Consensus 272 AGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L 301 (437)
-|.|+.+.++|. +|..|+++|.||..++.+
T Consensus 9 IGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 9 IGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTI 42 (415)
T ss_pred ECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 366766666654 578999999999998864
No 456
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.53 E-value=5e+02 Score=24.55 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=41.7
Q ss_pred ceEEeecC----ccch-hHHHHhccCCEEEEEeCC-----------HHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HH
Q 045638 265 QMTGDVFA----GVGP-ISIPAAKIVKRVYANDLN-----------PYAVDYLERNSVLNKLEKKIEVFNMDGRRF--ID 326 (437)
Q Consensus 265 e~VLDlFA----GvG~-FaI~aAkkg~~V~A~DlN-----------P~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~ 326 (437)
.+|+-.|+ |+|. ++..++.+|++|+..+.+ ......+.+.++.++. ++.++..|..+. +.
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~i~ 84 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV--KVSSMELDLTQNDAPK 84 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHH
Confidence 45666676 4442 344455578888876532 2222334455555443 588888886532 11
Q ss_pred HHHHh--hcCCcccEEEEcC
Q 045638 327 AMFAS--QKAHKITQVVMNL 344 (437)
Q Consensus 327 ~~~~~--~~~~~fD~VImnp 344 (437)
..... ...+..|.+|.|.
T Consensus 85 ~~~~~~~~~~g~id~li~~a 104 (256)
T PRK12859 85 ELLNKVTEQLGYPHILVNNA 104 (256)
T ss_pred HHHHHHHHHcCCCcEEEECC
Confidence 11110 1124579999885
No 457
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=26.44 E-value=1.1e+02 Score=30.75 Aligned_cols=88 Identities=9% Similarity=-0.088 Sum_probs=50.4
Q ss_pred ceEEeecC-ccchhHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEE
Q 045638 265 QMTGDVFA-GVGPISIPAAK-IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVM 342 (437)
Q Consensus 265 e~VLDlFA-GvG~FaI~aAk-kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VIm 342 (437)
++|+-.++ |+|.+++.+|+ .|++|++++.+++-.+.+++ .|.+. +++.+ +. ....+|.++.
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~~~--~~--------~~~~~d~~i~ 229 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAAS---AGGAY--DT--------PPEPLDAAIL 229 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCce---ecccc--cc--------CcccceEEEE
Confidence 56666654 36666666776 47899999999998766654 44431 12110 00 0123675443
Q ss_pred cCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEecc
Q 045638 343 NLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFS 379 (437)
Q Consensus 343 npP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~ 379 (437)
--.. ...+..+.++++++ |++-++.+.
T Consensus 230 ~~~~--~~~~~~~~~~l~~~--------G~~v~~G~~ 256 (329)
T TIGR02822 230 FAPA--GGLVPPALEALDRG--------GVLAVAGIH 256 (329)
T ss_pred CCCc--HHHHHHHHHhhCCC--------cEEEEEecc
Confidence 2222 13466677777775 567666663
No 458
>PRK07035 short chain dehydrogenase; Provisional
Probab=26.27 E-value=5.4e+02 Score=24.00 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=44.1
Q ss_pred ceEEeecCccchhHHHH----hccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPA----AKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~a----Akkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~ 336 (437)
.+|+-.| |.|.++..+ ++.|++|+.++.++...+.+...+...+ .++.++..|..+.- ...++. ..-+.
T Consensus 9 k~vlItG-as~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 85 (252)
T PRK07035 9 KIALVTG-ASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERHGR 85 (252)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 3444444 345455444 4468899999999988877766665433 24667777764331 111110 01235
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|.+.
T Consensus 86 id~li~~a 93 (252)
T PRK07035 86 LDILVNNA 93 (252)
T ss_pred CCEEEECC
Confidence 79888554
No 459
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=26.19 E-value=64 Score=32.62 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=48.0
Q ss_pred ceEEeecCccchhHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE
Q 045638 265 QMTGDVFAGVGPISIPAAKIVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV 341 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkkg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI 341 (437)
..++|++||.|+.+-.+...+. +.+-+|.+-.+++..+. ++-|.+. +..+.+|-.. +. + +..++|.||
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-~qdp~i~--~~~~v~DEE~-Ld--f---~ens~DLii 142 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPSIE--TSYFVGDEEF-LD--F---KENSVDLII 142 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc-cCCCceE--EEEEecchhc-cc--c---cccchhhhh
Confidence 6899999999999999888876 89999999888877654 3335553 5555666532 22 1 234567655
No 460
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=25.95 E-value=1.4e+02 Score=32.11 Aligned_cols=78 Identities=8% Similarity=0.077 Sum_probs=42.7
Q ss_pred HhccCCEEEEEeCC---HHHHHHHHHHHHHcCCCCcEEEE-EccHHHHHHHHHHhhcCCcccEEEEcCCcCh---HHHHH
Q 045638 281 AAKIVKRVYANDLN---PYAVDYLERNSVLNKLEKKIEVF-NMDGRRFIDAMFASQKAHKITQVVMNLPNDA---TEFLD 353 (437)
Q Consensus 281 aAkkg~~V~A~DlN---P~Ave~L~~NaklNkv~~~V~vi-~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a---~eFLd 353 (437)
+.++|.+|.-++.+ |.|++.++..++..+++ -.... ..|...........-....+|+||.|-|... ...+.
T Consensus 124 l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp-~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~ 202 (429)
T TIGR01425 124 YQRKGFKPCLVCADTFRAGAFDQLKQNATKARIP-FYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFE 202 (429)
T ss_pred HHHCCCCEEEEcCcccchhHHHHHHHHhhccCCe-EEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHH
Confidence 33457666555554 57899999999887765 11111 2354333222111101246899999988632 24455
Q ss_pred HHHHHh
Q 045638 354 AFRGIY 359 (437)
Q Consensus 354 aa~~ll 359 (437)
++..+.
T Consensus 203 El~~i~ 208 (429)
T TIGR01425 203 EMLQVA 208 (429)
T ss_pred HHHHHh
Confidence 555544
No 461
>PRK07074 short chain dehydrogenase; Provisional
Probab=25.61 E-value=4.5e+02 Score=24.65 Aligned_cols=73 Identities=18% Similarity=0.093 Sum_probs=43.3
Q ss_pred EEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCccc
Q 045638 267 TGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKIT 338 (437)
Q Consensus 267 VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~fD 338 (437)
++=.| |+|.++..++ ++|+.|++++.|+...+.+...+ ++ .++.++.+|+.+.- ...+.. ...+.+|
T Consensus 5 ilItG-at~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~--~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 79 (257)
T PRK07074 5 ALVTG-AAGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL--GD--ARFVPVACDLTDAASLAAALANAAAERGPVD 79 (257)
T ss_pred EEEEC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--cC--CceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 33333 4555666554 46889999999998776665544 22 25788888875532 111111 0123578
Q ss_pred EEEEcC
Q 045638 339 QVVMNL 344 (437)
Q Consensus 339 ~VImnp 344 (437)
.||.+.
T Consensus 80 ~vi~~a 85 (257)
T PRK07074 80 VLVANA 85 (257)
T ss_pred EEEECC
Confidence 888775
No 462
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.22 E-value=1.1e+02 Score=30.30 Aligned_cols=42 Identities=19% Similarity=-0.038 Sum_probs=27.7
Q ss_pred eEEeecCccc--hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHH
Q 045638 266 MTGDVFAGVG--PISIPAAKIVKRVYANDLNPYAVDYLERNSVL 307 (437)
Q Consensus 266 ~VLDlFAGvG--~FaI~aAkkg~~V~A~DlNP~Ave~L~~Nakl 307 (437)
.|.=+|+|.= .++..+++.|..|+..|.|++.++.+...+..
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~ 49 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATING 49 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 3555555532 23334555688999999999999887665443
No 463
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=25.12 E-value=74 Score=34.18 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=25.4
Q ss_pred CccchhHHH----HhccCCEEEEEeCCHHHHHHHHH
Q 045638 272 AGVGPISIP----AAKIVKRVYANDLNPYAVDYLER 303 (437)
Q Consensus 272 AGvG~FaI~----aAkkg~~V~A~DlNP~Ave~L~~ 303 (437)
.|+||.++. +|..|..|+++|+++.=++.++.
T Consensus 6 iGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~ 41 (414)
T COG1004 6 IGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNK 41 (414)
T ss_pred ECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhC
Confidence 488888775 44568899999999999987653
No 464
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=25.00 E-value=1.7e+02 Score=27.54 Aligned_cols=16 Identities=38% Similarity=0.289 Sum_probs=13.0
Q ss_pred HhccCCEEEEEeCCHH
Q 045638 281 AAKIVKRVYANDLNPY 296 (437)
Q Consensus 281 aAkkg~~V~A~DlNP~ 296 (437)
+|++|.+|..+|.+|.
T Consensus 25 la~~g~~VlliD~D~~ 40 (251)
T TIGR01969 25 LAKLGKKVLALDADIT 40 (251)
T ss_pred HHHCCCeEEEEeCCCC
Confidence 4557889999999984
No 465
>PRK06482 short chain dehydrogenase; Provisional
Probab=24.83 E-value=3.3e+02 Score=25.96 Aligned_cols=72 Identities=19% Similarity=0.080 Sum_probs=43.5
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~f 337 (437)
+||-.| |+|.++..+++ +|.+|++++.+++.++.+.... ..++.++.+|..+. +...+.. +....+
T Consensus 4 ~vlVtG-asg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 4 TWFITG-ASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred EEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 345444 45666665554 5889999999998877665532 22578888887543 2221110 012457
Q ss_pred cEEEEc
Q 045638 338 TQVVMN 343 (437)
Q Consensus 338 D~VImn 343 (437)
|.||.+
T Consensus 78 d~vi~~ 83 (276)
T PRK06482 78 DVVVSN 83 (276)
T ss_pred CEEEEC
Confidence 888876
No 466
>PLN02253 xanthoxin dehydrogenase
Probab=24.83 E-value=4.6e+02 Score=25.05 Aligned_cols=75 Identities=16% Similarity=-0.024 Sum_probs=44.3
Q ss_pred ceEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~ 336 (437)
.+++-.| |.|.++..+| ++|++|+.+|.+++..+.+...+.. ..++.++.+|..+.- ...... ...+.
T Consensus 19 k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~ 94 (280)
T PLN02253 19 KVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDKFGT 94 (280)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 3455555 4555565544 4688999999998877665554421 235788888876531 111110 01245
Q ss_pred ccEEEEc
Q 045638 337 ITQVVMN 343 (437)
Q Consensus 337 fD~VImn 343 (437)
+|.+|-|
T Consensus 95 id~li~~ 101 (280)
T PLN02253 95 LDIMVNN 101 (280)
T ss_pred CCEEEEC
Confidence 7888765
No 467
>PRK07814 short chain dehydrogenase; Provisional
Probab=24.79 E-value=5.8e+02 Score=24.18 Aligned_cols=76 Identities=12% Similarity=-0.001 Sum_probs=46.2
Q ss_pred ceEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~ 336 (437)
.+++=.| |+|.++..++ ++|++|+.++.+++..+.+...++..+ .++.++.+|..+.- ...++. ...+.
T Consensus 11 ~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07814 11 QVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAFGR 87 (263)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3455555 4565666544 468899999999988877766654322 35778888865432 111110 01235
Q ss_pred ccEEEEc
Q 045638 337 ITQVVMN 343 (437)
Q Consensus 337 fD~VImn 343 (437)
+|.||-+
T Consensus 88 id~vi~~ 94 (263)
T PRK07814 88 LDIVVNN 94 (263)
T ss_pred CCEEEEC
Confidence 7888765
No 468
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=24.77 E-value=4.3e+02 Score=27.12 Aligned_cols=77 Identities=17% Similarity=0.102 Sum_probs=42.7
Q ss_pred EeecCccchhHHHHhc----cC-C-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHhhcCCcccE
Q 045638 268 GDVFAGVGPISIPAAK----IV-K-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKITQ 339 (437)
Q Consensus 268 LDlFAGvG~FaI~aAk----kg-~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~~~~~~fD~ 339 (437)
+=+|| |..+-.+++ .. . +|+..|.|++..+.+.+.+ + ..++.+...|+.+. +..++ ...|.
T Consensus 2 lvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~--~~~~~~~~~d~~~~~~l~~~~-----~~~dv 70 (386)
T PF03435_consen 2 LVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--L--GDRVEAVQVDVNDPESLAELL-----RGCDV 70 (386)
T ss_dssp EEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----T--TTTEEEEE--TTTHHHHHHHH-----TTSSE
T ss_pred EEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--c--ccceeEEEEecCCHHHHHHHH-----hcCCE
Confidence 34555 555555444 33 3 7999999999988777654 2 23688888887754 33433 23588
Q ss_pred EEEcC-CcChHHHHHHH
Q 045638 340 VVMNL-PNDATEFLDAF 355 (437)
Q Consensus 340 VImnp-P~~a~eFLdaa 355 (437)
||.-. |......+.++
T Consensus 71 Vin~~gp~~~~~v~~~~ 87 (386)
T PF03435_consen 71 VINCAGPFFGEPVARAC 87 (386)
T ss_dssp EEE-SSGGGHHHHHHHH
T ss_pred EEECCccchhHHHHHHH
Confidence 88665 44444444443
No 469
>PRK05872 short chain dehydrogenase; Provisional
Probab=24.60 E-value=5.7e+02 Score=24.98 Aligned_cols=76 Identities=14% Similarity=0.020 Sum_probs=43.9
Q ss_pred ceEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~ 336 (437)
.+|+-.| |+|.++..+| ++|++|+.++.+++.++.+.+.+.. ...+..+.+|..+.- ...... ...+.
T Consensus 10 k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 10 KVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERFGG 85 (296)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4455444 4455555544 4688999999999887776655431 224556667765431 111110 01246
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|.|.
T Consensus 86 id~vI~nA 93 (296)
T PRK05872 86 IDVVVANA 93 (296)
T ss_pred CCEEEECC
Confidence 89988775
No 470
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.59 E-value=1.4e+02 Score=29.45 Aligned_cols=38 Identities=26% Similarity=0.084 Sum_probs=25.6
Q ss_pred eEEeecCcc--chhHHHHhccCCEEEEEeCCHHHHHHHHH
Q 045638 266 MTGDVFAGV--GPISIPAAKIVKRVYANDLNPYAVDYLER 303 (437)
Q Consensus 266 ~VLDlFAGv--G~FaI~aAkkg~~V~A~DlNP~Ave~L~~ 303 (437)
.|.=+|+|. ++++..+++.|..|+.+|.||+.++..+.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~ 44 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLA 44 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Confidence 355555552 34445555678899999999999875543
No 471
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=24.51 E-value=1.3e+02 Score=34.23 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=33.9
Q ss_pred ceEEeecCcc--chhHHHHh-ccCCEEEEEeCCHHHHHHHHHHHH
Q 045638 265 QMTGDVFAGV--GPISIPAA-KIVKRVYANDLNPYAVDYLERNSV 306 (437)
Q Consensus 265 e~VLDlFAGv--G~FaI~aA-kkg~~V~A~DlNP~Ave~L~~Nak 306 (437)
..|.-+|||+ ..++..+| ..|..|+..|.++++++....+++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~ 354 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSW 354 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH
Confidence 5688899998 56666677 668999999999999888766654
No 472
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=24.50 E-value=74 Score=30.66 Aligned_cols=45 Identities=22% Similarity=0.104 Sum_probs=38.9
Q ss_pred ceEEeecCccchhHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcC
Q 045638 265 QMTGDVFAGVGPISIPAAKI--VKRVYANDLNPYAVDYLERNSVLNK 309 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAkk--g~~V~A~DlNP~Ave~L~~NaklNk 309 (437)
.+-+|++|.+|.|.-.+|+. ..+++|+|--.++-...+-|+++|+
T Consensus 81 ttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnn 127 (286)
T PF05575_consen 81 TTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLNN 127 (286)
T ss_pred ceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeCC
Confidence 67999999999999888885 2489999988888888888888886
No 473
>PRK05855 short chain dehydrogenase; Validated
Probab=24.32 E-value=6.2e+02 Score=26.71 Aligned_cols=77 Identities=14% Similarity=-0.018 Sum_probs=48.5
Q ss_pred ceEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~ 336 (437)
.+++-.| |+|.++..+| ++|.+|+.++.|+...+.+...++..+. ++.++.+|+.+.- ....+. ...+.
T Consensus 316 ~~~lv~G-~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 316 KLVVVTG-AGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CEEEEEC-CcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 4555444 4666666544 4688999999999888877766655443 5888888876532 111111 01245
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.+|.|-
T Consensus 393 id~lv~~A 400 (582)
T PRK05855 393 PDIVVNNA 400 (582)
T ss_pred CcEEEECC
Confidence 88888773
No 474
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=24.28 E-value=1.8e+02 Score=27.48 Aligned_cols=77 Identities=10% Similarity=-0.001 Sum_probs=48.7
Q ss_pred ceEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~ 336 (437)
.+++=.| |+|.++..+|+ +|++|+.++.+++..+.+...++.++. ++.++.+|..+. +...+.. .....
T Consensus 13 k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 13 KTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI--DALWIAADVADEADIERLAEETLERFGH 89 (259)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4455554 56777776665 588999999999888777766655432 577888887642 2111110 01245
Q ss_pred ccEEEEcC
Q 045638 337 ITQVVMNL 344 (437)
Q Consensus 337 fD~VImnp 344 (437)
+|.||.+.
T Consensus 90 id~vi~~a 97 (259)
T PRK08213 90 VDILVNNA 97 (259)
T ss_pred CCEEEECC
Confidence 78888774
No 475
>PRK05717 oxidoreductase; Validated
Probab=24.10 E-value=2.9e+02 Score=25.97 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=42.4
Q ss_pred ceEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHHHhhcC
Q 045638 265 QMTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF------IDAMFASQKA 334 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~------l~~~~~~~~~ 334 (437)
.+|+-.| |.|.++..+| ++|++|+.+|.++...+.+.... ..++.++.+|..+. +....+ ..
T Consensus 11 k~vlItG-~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~--~~ 82 (255)
T PRK05717 11 RVALVTG-AARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAEVLG--QF 82 (255)
T ss_pred CEEEEeC-CcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHHH--Hh
Confidence 4566555 4455555544 46889999999987554443322 23577888887653 222221 12
Q ss_pred CcccEEEEcC
Q 045638 335 HKITQVVMNL 344 (437)
Q Consensus 335 ~~fD~VImnp 344 (437)
+.+|.+|.+.
T Consensus 83 g~id~li~~a 92 (255)
T PRK05717 83 GRLDALVCNA 92 (255)
T ss_pred CCCCEEEECC
Confidence 3579888664
No 476
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=24.02 E-value=7e+02 Score=24.71 Aligned_cols=81 Identities=12% Similarity=0.044 Sum_probs=45.4
Q ss_pred ccchhHHHHhc-cCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEEEcCCcChHH
Q 045638 273 GVGPISIPAAK-IVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVVMNLPNDATE 350 (437)
Q Consensus 273 GvG~FaI~aAk-kg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VImnpP~~a~e 350 (437)
++|.+++.+|+ .|+ .|++.+.+++-.+.+++ .+.+.-+.....|..+.+.... ....+|.|+-.-.. ..
T Consensus 183 ~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~---~~~~~d~vid~~g~--~~ 253 (351)
T cd08233 183 PIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT---GGGGVDVSFDCAGV--QA 253 (351)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh---CCCCCCEEEECCCC--HH
Confidence 46666666666 477 89999999998887743 2443111112233333333322 22348888765432 22
Q ss_pred HHHHHHHHhcCC
Q 045638 351 FLDAFRGIYRDR 362 (437)
Q Consensus 351 FLdaa~~llk~~ 362 (437)
.++.+.+.++.+
T Consensus 254 ~~~~~~~~l~~~ 265 (351)
T cd08233 254 TLDTAIDALRPR 265 (351)
T ss_pred HHHHHHHhccCC
Confidence 345666677664
No 477
>PRK06940 short chain dehydrogenase; Provisional
Probab=24.00 E-value=1.6e+02 Score=28.65 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=45.2
Q ss_pred eEEeecCccchhHHHHhc---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh-hcCCcccE
Q 045638 266 MTGDVFAGVGPISIPAAK---IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS-QKAHKITQ 339 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk---kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~-~~~~~fD~ 339 (437)
+++--|| |.++..+|+ .|++|+++|.+++..+.+.+.++..+. ++.++.+|..+. +...+.. ...+.+|.
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF--DVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 3444443 456666554 578999999999887766655544332 577888887543 1222211 01246898
Q ss_pred EEEcC
Q 045638 340 VVMNL 344 (437)
Q Consensus 340 VImnp 344 (437)
+|.|.
T Consensus 80 li~nA 84 (275)
T PRK06940 80 LVHTA 84 (275)
T ss_pred EEECC
Confidence 88774
No 478
>PRK13761 hypothetical protein; Provisional
Probab=23.75 E-value=2.5e+02 Score=28.17 Aligned_cols=86 Identities=23% Similarity=0.228 Sum_probs=52.5
Q ss_pred EEEEEeCCCCcccHHHHHHHHHHhcCCCceEEEEccccccccccceeeeccce-eeec-ccccceEEeecCccchhHHHH
Q 045638 204 IAHLNLREEHQPFKYLIAKVVLDKNKPKIQTVVNKIDAIHNDYRTMQLEGDAY-MCES-LFFVQMTGDVFAGVGPISIPA 281 (437)
Q Consensus 204 Ia~lnl~~e~~p~k~~I~evLl~k~~P~iktVv~K~~~I~gefR~~~levLaG-v~E~-~FF~e~VLDlFAGvG~FaI~a 281 (437)
=+-+||.-.-....+.|++.|.+ + +.+.|... +. .-|.+.+..-.| +.+. .|-.++||-.- =-|=-+=.+
T Consensus 96 ~iEVNLF~RT~eR~~~I~~~l~~-~--Ga~~vlG~-~~---~~~ip~L~~~R~~v~~~GIy~ADVVLVPL-EDGDR~EaL 167 (248)
T PRK13761 96 KLEVNLFYRTEERVEKIAEVLRE-H--GAKEVLGT-DE---DARIPGLDHERAKVSEDGIYSADVVLVPL-EDGDRTEAL 167 (248)
T ss_pred CEEEEeccCCHHHHHHHHHHHHH-c--CCceeeCC-CC---cCcCCCCCCccceECcccceeccEEEecC-CCCcHHHHH
Confidence 35678866666777889888776 3 56655542 21 345555555555 3333 44446665433 334455556
Q ss_pred hccCCEEEEEeCCHHH
Q 045638 282 AKIVKRVYANDLNPYA 297 (437)
Q Consensus 282 Akkg~~V~A~DlNP~A 297 (437)
.+.|++|+++|+||-|
T Consensus 168 ~~mGK~VI~IDLNPLS 183 (248)
T PRK13761 168 VKMGKTVIAIDLNPLS 183 (248)
T ss_pred HHcCCeEEEEeCCCcc
Confidence 6679999999999955
No 479
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=23.58 E-value=1.2e+02 Score=30.75 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=27.2
Q ss_pred ceEEeecC-ccchhHHHHhc-cCC-EEEEEeCCHHHHHHHHH
Q 045638 265 QMTGDVFA-GVGPISIPAAK-IVK-RVYANDLNPYAVDYLER 303 (437)
Q Consensus 265 e~VLDlFA-GvG~FaI~aAk-kg~-~V~A~DlNP~Ave~L~~ 303 (437)
++|+-.+| ++|.+++.+|+ .|+ +|+++|.+++-.+.+++
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 44555544 35666666676 477 79999999998887754
No 480
>COG4084 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.52 E-value=49 Score=29.85 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=22.7
Q ss_pred hHHHHHHHhhcchhhhhhhhhCCCC
Q 045638 112 NWAMTEFLYRLQPLLSLRMALKYSV 136 (437)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (437)
+|-+.+|.+|.-.+..|..+.+..|
T Consensus 24 k~il~sy~~~~DVv~pla~~L~Idv 48 (135)
T COG4084 24 KWILTSYAYRRDVVHPLAELLNIDV 48 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 6778899999999999999999977
No 481
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.52 E-value=5.9e+02 Score=23.88 Aligned_cols=77 Identities=12% Similarity=0.017 Sum_probs=41.8
Q ss_pred ceEEeecCcc-chhHH----HHhccCCEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--
Q 045638 265 QMTGDVFAGV-GPISI----PAAKIVKRVYANDLN------------PYAVDYLERNSVLNKLEKKIEVFNMDGRRFI-- 325 (437)
Q Consensus 265 e~VLDlFAGv-G~FaI----~aAkkg~~V~A~DlN------------P~Ave~L~~NaklNkv~~~V~vi~gDa~~~l-- 325 (437)
.+|+-.||+- |.++. .++++|+.|++++.+ +.+.. +...++.. ..++.++..|..+.-
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESY--GVRCEHMEIDLSQPYAP 82 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhc--CCeEEEEECCCCCHHHH
Confidence 3566666531 34444 444568899999876 33333 33333322 235888899875532
Q ss_pred HHHHHh--hcCCcccEEEEcC
Q 045638 326 DAMFAS--QKAHKITQVVMNL 344 (437)
Q Consensus 326 ~~~~~~--~~~~~fD~VImnp 344 (437)
...+.. ...+.+|.||.+.
T Consensus 83 ~~~~~~~~~~~g~id~vi~~a 103 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNA 103 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECC
Confidence 111110 0124689888764
No 482
>PLN02650 dihydroflavonol-4-reductase
Probab=23.22 E-value=2.2e+02 Score=28.52 Aligned_cols=57 Identities=14% Similarity=-0.010 Sum_probs=35.7
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHH
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRR 323 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~ 323 (437)
+||-. .|+|.++-.+++ +|.+|++++.++.....+..-....+...+++++.+|..+
T Consensus 7 ~iLVT-GatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d 67 (351)
T PLN02650 7 TVCVT-GASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAV 67 (351)
T ss_pred EEEEe-CCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCC
Confidence 34433 467777777665 5789999988876665543322222332358889999865
No 483
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=23.17 E-value=1.9e+02 Score=26.30 Aligned_cols=78 Identities=13% Similarity=0.068 Sum_probs=34.1
Q ss_pred ceEEeecCccch-hHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccEEE-E
Q 045638 265 QMTGDVFAGVGP-ISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQVV-M 342 (437)
Q Consensus 265 e~VLDlFAGvG~-FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~VI-m 342 (437)
.+|+.+|-|-=+ .|..++..|..|+++|+||. ++. .+ +.++..|.++--..+. ...|.|. .
T Consensus 15 ~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-~g----~~~v~DDif~P~l~iY-----~~a~lIYSi 77 (127)
T PF03686_consen 15 GKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-EG----VNFVVDDIFNPNLEIY-----EGADLIYSI 77 (127)
T ss_dssp SEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S------------S----TTEE---SSS--HHHH-----TTEEEEEEE
T ss_pred CcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-cC----cceeeecccCCCHHHh-----cCCcEEEEe
Confidence 456666544322 12233345889999999998 333 33 4567777776322222 2367765 5
Q ss_pred cCCcChHHHHHHHHHHh
Q 045638 343 NLPNDATEFLDAFRGIY 359 (437)
Q Consensus 343 npP~~a~eFLdaa~~ll 359 (437)
+||..-..++-...+..
T Consensus 78 RPP~El~~~il~lA~~v 94 (127)
T PF03686_consen 78 RPPPELQPPILELAKKV 94 (127)
T ss_dssp S--TTSHHHHHHHHHHH
T ss_pred CCChHHhHHHHHHHHHh
Confidence 77775544444443333
No 484
>PRK08177 short chain dehydrogenase; Provisional
Probab=23.12 E-value=2.7e+02 Score=25.77 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=37.8
Q ss_pred CccchhHHH----HhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHhhcCCcccEEEEcC
Q 045638 272 AGVGPISIP----AAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFASQKAHKITQVVMNL 344 (437)
Q Consensus 272 AGvG~FaI~----aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~~~~~~fD~VImnp 344 (437)
.|+|.++-. +++.|.+|++++.++...+.+.. .. ++.++.+|..+. +..+.+.-....+|.||.|.
T Consensus 8 G~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~------~~-~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~a 79 (225)
T PRK08177 8 GASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA------LP-GVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNA 79 (225)
T ss_pred CCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh------cc-ccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcC
Confidence 345655544 44568899999999876544322 22 456677776542 22222111124689988764
No 485
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.03 E-value=2.7e+02 Score=25.64 Aligned_cols=77 Identities=10% Similarity=0.019 Sum_probs=45.9
Q ss_pred ceEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCc
Q 045638 265 QMTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHK 336 (437)
Q Consensus 265 e~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~ 336 (437)
.+|+-.|+ +|.++..+++ .|+.|++.+-+++..+.+...+..++ ++.++.+|..+. +...++. ...+.
T Consensus 6 ~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 6 KKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred cEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 35665664 4656655554 58899999999988877655554332 577888886542 1111110 01234
Q ss_pred ccEEEEcCC
Q 045638 337 ITQVVMNLP 345 (437)
Q Consensus 337 fD~VImnpP 345 (437)
+|.++.+..
T Consensus 82 id~ii~~ag 90 (238)
T PRK05786 82 IDGLVVTVG 90 (238)
T ss_pred CCEEEEcCC
Confidence 688877664
No 486
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=22.97 E-value=6.7e+02 Score=24.71 Aligned_cols=75 Identities=11% Similarity=-0.021 Sum_probs=44.2
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+|+-.| |+|.++..+++ +|++|+.++.|+...+.+...+... ..++.++.+|..+.- ...... .....+
T Consensus 8 ~vlVTG-as~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i 84 (322)
T PRK07453 8 TVIITG-ASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRALGKPL 84 (322)
T ss_pred EEEEEc-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Confidence 344444 45555555444 6889999999988777666555322 235788888865431 111110 112358
Q ss_pred cEEEEc
Q 045638 338 TQVVMN 343 (437)
Q Consensus 338 D~VImn 343 (437)
|.+|.|
T Consensus 85 D~li~n 90 (322)
T PRK07453 85 DALVCN 90 (322)
T ss_pred cEEEEC
Confidence 988876
No 487
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.94 E-value=6.7e+02 Score=23.92 Aligned_cols=77 Identities=10% Similarity=-0.056 Sum_probs=40.1
Q ss_pred ceEEeecCc----cc-hhHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCC
Q 045638 265 QMTGDVFAG----VG-PISIPAAKIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAH 335 (437)
Q Consensus 265 e~VLDlFAG----vG-~FaI~aAkkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~ 335 (437)
.+++--|++ +| ..+..+|+.|++|+..+.|+..-+.+++-.+..+ ...++..|+.+. +..+.+. ..-+
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g---~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG---CNFVSELDVTNPKSISNLFDDIKEKWG 85 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC---CceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456666663 44 3445566789999988888543333333322222 123567776543 1111110 1124
Q ss_pred cccEEEEcC
Q 045638 336 KITQVVMNL 344 (437)
Q Consensus 336 ~fD~VImnp 344 (437)
.+|.+|.|.
T Consensus 86 ~iDilVnna 94 (260)
T PRK06603 86 SFDFLLHGM 94 (260)
T ss_pred CccEEEEcc
Confidence 688887764
No 488
>PLN02740 Alcohol dehydrogenase-like
Probab=22.85 E-value=1.2e+02 Score=31.03 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=26.5
Q ss_pred ceEEeecCc-cchhHHHHhc-cCC-EEEEEeCCHHHHHHHHH
Q 045638 265 QMTGDVFAG-VGPISIPAAK-IVK-RVYANDLNPYAVDYLER 303 (437)
Q Consensus 265 e~VLDlFAG-vG~FaI~aAk-kg~-~V~A~DlNP~Ave~L~~ 303 (437)
++|+-.+|| +|.+++.+|+ .|+ .|+++|.+++-.+.+++
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 556655442 4555555565 477 79999999998887754
No 489
>PRK09072 short chain dehydrogenase; Provisional
Probab=22.81 E-value=1.8e+02 Score=27.67 Aligned_cols=74 Identities=15% Similarity=0.005 Sum_probs=44.1
Q ss_pred EEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh-hcCCcccE
Q 045638 267 TGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS-QKAHKITQ 339 (437)
Q Consensus 267 VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~-~~~~~fD~ 339 (437)
++=.| |+|.++..++ ++|..|++++.++...+.+..-++ . ..++.++.+|..+.- ....+. ...+.+|.
T Consensus 8 vlItG-~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~ 83 (263)
T PRK09072 8 VLLTG-ASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP-Y--PGRHRWVVADLTSEAGREAVLARAREMGGINV 83 (263)
T ss_pred EEEEC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh-c--CCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence 44443 4455555544 468899999999988877665442 1 236888888875532 111110 01245788
Q ss_pred EEEcC
Q 045638 340 VVMNL 344 (437)
Q Consensus 340 VImnp 344 (437)
+|.+-
T Consensus 84 lv~~a 88 (263)
T PRK09072 84 LINNA 88 (263)
T ss_pred EEECC
Confidence 88763
No 490
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=22.74 E-value=6.4e+02 Score=23.61 Aligned_cols=78 Identities=14% Similarity=0.021 Sum_probs=44.7
Q ss_pred eEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~f 337 (437)
+|+-.| |.|.++..++ ++|+.|+.+|.++...+.+...++.-.-..++.++.+|..+. +...... ......
T Consensus 4 ~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~i 82 (259)
T PRK12384 4 VAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGRV 82 (259)
T ss_pred EEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 455555 4455555444 468899999999887776655443211112578888886542 1111110 012457
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.||.+.
T Consensus 83 d~vv~~a 89 (259)
T PRK12384 83 DLLVYNA 89 (259)
T ss_pred CEEEECC
Confidence 8888764
No 491
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.53 E-value=4.4e+02 Score=25.16 Aligned_cols=75 Identities=9% Similarity=0.054 Sum_probs=41.7
Q ss_pred ceEEeecCc-cchhHHHHhc----cCCEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hc
Q 045638 265 QMTGDVFAG-VGPISIPAAK----IVKRVYANDLNP--YAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QK 333 (437)
Q Consensus 265 e~VLDlFAG-vG~FaI~aAk----kg~~V~A~DlNP--~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~ 333 (437)
.+++-.|+| .+.++..+|+ .|++|+..+.++ +..+.+...+ + .++.++..|+.+. +....+. ..
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~i~~~~~~~~~~ 82 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---P--EPAPVLELDVTNEEHLASLADRVREH 82 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---C--CCCcEEeCCCCCHHHHHHHHHHHHHH
Confidence 467777774 4555555544 688999988763 4444443322 1 1456777886543 1221110 11
Q ss_pred CCcccEEEEcC
Q 045638 334 AHKITQVVMNL 344 (437)
Q Consensus 334 ~~~fD~VImnp 344 (437)
.+.+|.+|.|-
T Consensus 83 ~g~iD~li~nA 93 (256)
T PRK07889 83 VDGLDGVVHSI 93 (256)
T ss_pred cCCCcEEEEcc
Confidence 35689888753
No 492
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=22.36 E-value=1.3e+02 Score=29.31 Aligned_cols=94 Identities=15% Similarity=-0.025 Sum_probs=49.3
Q ss_pred ceEEeecC-ccchhHHHHhc-cCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc-HHHHHHHHHHhhcCCcccEE
Q 045638 265 QMTGDVFA-GVGPISIPAAK-IVK-RVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMD-GRRFIDAMFASQKAHKITQV 340 (437)
Q Consensus 265 e~VLDlFA-GvG~FaI~aAk-kg~-~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gD-a~~~l~~~~~~~~~~~fD~V 340 (437)
++|+-.++ ++|.+++.+|+ .|+ .|+++|.++.-.+.+++ .+.+ .+++.+ ..+.+.... ....+|.|
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~~---~~~g~d~v 191 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT---ALAEPEVLAERQGGLQ---NGRGVDVA 191 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---EecCchhhHHHHHHHh---CCCCCCEE
Confidence 34554544 34555555565 477 49999999988776654 3432 112211 112222211 12357876
Q ss_pred EEcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEec
Q 045638 341 VMNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGF 378 (437)
Q Consensus 341 ImnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F 378 (437)
+-- -. ...-++.+..+++++ +.+-++..
T Consensus 192 id~-~G-~~~~~~~~~~~l~~~--------G~iv~~G~ 219 (280)
T TIGR03366 192 LEF-SG-ATAAVRACLESLDVG--------GTAVLAGS 219 (280)
T ss_pred EEC-CC-ChHHHHHHHHHhcCC--------CEEEEecc
Confidence 643 22 233456667777775 46666664
No 493
>PRK07774 short chain dehydrogenase; Provisional
Probab=22.32 E-value=6.3e+02 Score=23.39 Aligned_cols=76 Identities=17% Similarity=0.056 Sum_probs=45.0
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+++=.| |+|.++..+++ +|++|+.++.++...+.+...++.. ..++..+..|..+.- ...... ...+.+
T Consensus 8 ~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 84 (250)
T PRK07774 8 VAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--GGTAIAVQVDVSDPDSAKAMADATVSAFGGI 84 (250)
T ss_pred EEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 344333 55666666654 6889999999988877766555432 224667788865432 111110 012358
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.||.+-
T Consensus 85 d~vi~~a 91 (250)
T PRK07774 85 DYLVNNA 91 (250)
T ss_pred CEEEECC
Confidence 9888754
No 494
>PRK12939 short chain dehydrogenase; Provisional
Probab=22.31 E-value=2.2e+02 Score=26.42 Aligned_cols=75 Identities=13% Similarity=-0.018 Sum_probs=46.5
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+++ +..|.|.++..+|+ +|++|++++.+++..+.+...++.-+ .++.++.+|..+.- ...+.. .....+
T Consensus 9 ~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 85 (250)
T PRK12939 9 RAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALGGL 85 (250)
T ss_pred EEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 344 44456777777665 58899999999988776665554222 36888899876432 222211 011457
Q ss_pred cEEEEc
Q 045638 338 TQVVMN 343 (437)
Q Consensus 338 D~VImn 343 (437)
|.||-+
T Consensus 86 d~vi~~ 91 (250)
T PRK12939 86 DGLVNN 91 (250)
T ss_pred CEEEEC
Confidence 888765
No 495
>PRK06181 short chain dehydrogenase; Provisional
Probab=22.05 E-value=2.2e+02 Score=26.92 Aligned_cols=76 Identities=12% Similarity=-0.029 Sum_probs=46.4
Q ss_pred eEEeecCccchhHHHHh----ccCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAA----KIVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRFI--DAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aA----kkg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l--~~~~~~--~~~~~f 337 (437)
+|+-.| |+|.++..++ ++|+.|++++.++...+.+...++..+ .++.++.+|..+.- ...+.. ...+.+
T Consensus 3 ~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 3 VVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred EEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 344444 5566666554 468899999999988877766665433 36788888875532 111111 012357
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.||.+.
T Consensus 80 d~vi~~a 86 (263)
T PRK06181 80 DILVNNA 86 (263)
T ss_pred CEEEECC
Confidence 8888763
No 496
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=21.84 E-value=1.5e+02 Score=29.83 Aligned_cols=94 Identities=9% Similarity=-0.006 Sum_probs=51.5
Q ss_pred ceEEeecCc-cchhHHHHhc-cCCEEEEEeC---CHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHHhhcCCcccE
Q 045638 265 QMTGDVFAG-VGPISIPAAK-IVKRVYANDL---NPYAVDYLERNSVLNKLEKKIEVFNMDGRRFIDAMFASQKAHKITQ 339 (437)
Q Consensus 265 e~VLDlFAG-vG~FaI~aAk-kg~~V~A~Dl---NP~Ave~L~~NaklNkv~~~V~vi~gDa~~~l~~~~~~~~~~~fD~ 339 (437)
+.|+-.+|| +|.+++.+|+ .|++|++++. ++.-.+.+++ .+.+ .+..-..|..+ .. ....+|.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~-~~------~~~~~d~ 241 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAE-VK------LVGEFDL 241 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhh-hh------hcCCCCE
Confidence 455555553 5666776776 4779999987 6777766543 3432 12111111111 11 1235786
Q ss_pred EEEcCCcChHHHHHHHHHHhcCCCCCCCCCccEEEEEeccC
Q 045638 340 VVMNLPNDATEFLDAFRGIYRDRPEDVKFTFPKTHVYGFSK 380 (437)
Q Consensus 340 VImnpP~~a~eFLdaa~~llk~~~~~~~~~~p~IHvY~F~k 380 (437)
|+---. +...+..+.++++++ |.+-++....
T Consensus 242 vid~~g--~~~~~~~~~~~l~~~--------G~~v~~G~~~ 272 (355)
T cd08230 242 IIEATG--VPPLAFEALPALAPN--------GVVILFGVPG 272 (355)
T ss_pred EEECcC--CHHHHHHHHHHccCC--------cEEEEEecCC
Confidence 655433 234677778888776 4565655543
No 497
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=21.61 E-value=1.4e+02 Score=34.23 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=33.7
Q ss_pred ceEEeecCcc--chhHHHHhccCCEEEEEeCCHHHHHHHHHHHHH
Q 045638 265 QMTGDVFAGV--GPISIPAAKIVKRVYANDLNPYAVDYLERNSVL 307 (437)
Q Consensus 265 e~VLDlFAGv--G~FaI~aAkkg~~V~A~DlNP~Ave~L~~Nakl 307 (437)
..|.-+|||+ +.++..+|..|..|+..|.++++++.....++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 380 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFK 380 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHH
Confidence 4688889986 355556777899999999999999887666643
No 498
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=21.55 E-value=2.2e+02 Score=28.40 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=11.1
Q ss_pred CcccEEEEcCCcCh
Q 045638 335 HKITQVVMNLPNDA 348 (437)
Q Consensus 335 ~~fD~VImnpP~~a 348 (437)
+.||+||+|.|.+.
T Consensus 111 ~~yD~iVvDtaPtg 124 (284)
T TIGR00345 111 NEFDVVIFDTAPTG 124 (284)
T ss_pred ccCCEEEECCCChH
Confidence 46999999988743
No 499
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=21.45 E-value=5.9e+02 Score=23.85 Aligned_cols=73 Identities=18% Similarity=0.102 Sum_probs=43.3
Q ss_pred eEEeecCccchhHHHHhc----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHHHh--hcCCcc
Q 045638 266 MTGDVFAGVGPISIPAAK----IVKRVYANDLNPYAVDYLERNSVLNKLEKKIEVFNMDGRRF--IDAMFAS--QKAHKI 337 (437)
Q Consensus 266 ~VLDlFAGvG~FaI~aAk----kg~~V~A~DlNP~Ave~L~~NaklNkv~~~V~vi~gDa~~~--l~~~~~~--~~~~~f 337 (437)
+|+-.| |+|.++..+|+ +|.+|+.+|.++...+.+.... ..++.++.+|..+. +...+.. ...+..
T Consensus 8 ~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (257)
T PRK07067 8 VALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAAVERFGGI 81 (257)
T ss_pred EEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 344444 56666766664 5889999999998776654432 22577888886432 1111110 012457
Q ss_pred cEEEEcC
Q 045638 338 TQVVMNL 344 (437)
Q Consensus 338 D~VImnp 344 (437)
|.+|.+.
T Consensus 82 d~li~~a 88 (257)
T PRK07067 82 DILFNNA 88 (257)
T ss_pred CEEEECC
Confidence 8887763
No 500
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=21.04 E-value=1.6e+02 Score=33.59 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=32.5
Q ss_pred ceEEeecCccc--hhHHHHhccCCEEEEEeCCHHHHHHHHHHHH
Q 045638 265 QMTGDVFAGVG--PISIPAAKIVKRVYANDLNPYAVDYLERNSV 306 (437)
Q Consensus 265 e~VLDlFAGvG--~FaI~aAkkg~~V~A~DlNP~Ave~L~~Nak 306 (437)
..|.-+|||+= .++..+|..|..|+..|.|+++++....+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~ 357 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAA 357 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH
Confidence 35788888863 4555566789999999999999988776664
Done!