BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045639
         (348 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
           Cys2his2 Zinc Finger Induces Structural Rearrangements
           Of Typical Dna Base Determinant Positions
 pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
           Arabidopsis Thaliana Superman Protein
          Length = 39

 Score = 33.5 bits (75), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 16/25 (64%)

Query: 218 KVHECSICGAEFTSGQALGGHMRRH 242
           + + CS C  EF S QALGGHM  H
Sbjct: 5   RSYTCSFCKREFRSAQALGGHMNVH 29



 Score = 29.3 bits (64), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 13/23 (56%)

Query: 148 YECKTCNRTFPSFQALGGHRASH 170
           Y C  C R F S QALGGH   H
Sbjct: 7   YTCSFCKREFRSAQALGGHMNVH 29


>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
           Peptide
 pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
           Enzymes
 pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
           Enzymes
 pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
           Enzymes
 pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
           Enzymes
 pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
           Enzymes
 pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
 pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
 pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
 pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
 pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
          Length = 253

 Score = 29.3 bits (64), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 95  KPKPAHYDIHEQEE--IAQLQINNNVNNSGMKFNSRRFLE 132
           +P PAHY I E E   I +  I  N++    +  SRR LE
Sbjct: 77  EPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLE 116


>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           752- 784) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 218 KVHECSICGAEFTSGQALGGHMRRH 242
           K +ECS+CG  F+  Q+L  H R H
Sbjct: 11  KPYECSVCGKAFSHRQSLSVHQRIH 35


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
           Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 28.1 bits (61), Expect = 7.0,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 205 EEEDGNFRNGNSSKVHECSICGAEFTSGQALGGHMRRHR 243
           +E   ++R    +K  +C +C   F+    L  HM+RH+
Sbjct: 61  DELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99


>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 36

 Score = 28.1 bits (61), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 213 NGNSSKVHECSICGAEFTSGQALGGHMRRH 242
           +G+S K H C +CG +F S   L  H   H
Sbjct: 3   SGSSGKTHLCDMCGKKFKSKGTLKSHKLLH 32


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.128    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,163,129
Number of Sequences: 62578
Number of extensions: 204489
Number of successful extensions: 452
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 44
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)