Query 045639
Match_columns 348
No_of_seqs 474 out of 2706
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462 C2H2-type Zn-finger pr 99.9 2.2E-24 4.8E-29 192.5 6.3 129 108-263 129-259 (279)
2 KOG2462 C2H2-type Zn-finger pr 99.8 1.6E-21 3.4E-26 174.3 2.1 111 100-240 149-264 (279)
3 KOG1074 Transcriptional repres 99.6 7.8E-16 1.7E-20 154.6 3.0 64 200-263 614-684 (958)
4 KOG1074 Transcriptional repres 99.5 6.2E-15 1.3E-19 148.2 5.2 66 100-171 624-692 (958)
5 KOG3576 Ovo and related transc 99.5 5E-15 1.1E-19 126.7 0.4 97 144-258 114-223 (267)
6 KOG3623 Homeobox transcription 99.4 2.5E-14 5.4E-19 141.7 0.4 81 142-240 889-971 (1007)
7 KOG3576 Ovo and related transc 99.4 4E-14 8.6E-19 121.2 -0.5 117 107-246 115-239 (267)
8 KOG3608 Zn finger proteins [Ge 99.4 6.8E-14 1.5E-18 128.7 0.0 120 120-243 184-316 (467)
9 KOG3608 Zn finger proteins [Ge 99.3 1.6E-13 3.6E-18 126.2 -1.4 156 100-264 198-369 (467)
10 KOG3623 Homeobox transcription 99.2 1.6E-12 3.4E-17 129.1 -1.0 80 105-194 890-971 (1007)
11 PHA00733 hypothetical protein 98.7 5.3E-09 1.1E-13 86.0 3.0 80 145-244 38-124 (128)
12 PLN03086 PRLI-interacting fact 98.6 3.8E-08 8.1E-13 98.6 6.3 93 145-260 451-554 (567)
13 PHA02768 hypothetical protein; 98.6 2.3E-08 4.9E-13 68.7 1.6 42 147-190 5-48 (55)
14 PF13465 zf-H2C2_2: Zinc-finge 98.6 8.6E-09 1.9E-13 60.5 -0.6 25 207-231 2-26 (26)
15 PHA02768 hypothetical protein; 98.5 4.7E-08 1E-12 67.2 2.3 44 219-264 5-48 (55)
16 PLN03086 PRLI-interacting fact 98.5 5.7E-08 1.2E-12 97.3 3.4 109 107-240 451-561 (567)
17 PHA00733 hypothetical protein 98.4 1.3E-07 2.9E-12 77.7 2.7 78 108-194 39-120 (128)
18 PHA00616 hypothetical protein 98.1 1.4E-06 3E-11 57.1 1.2 33 219-251 1-33 (44)
19 PHA00616 hypothetical protein 98.0 2.4E-06 5.2E-11 56.0 0.9 32 147-178 1-32 (44)
20 PF13465 zf-H2C2_2: Zinc-finge 97.9 1.1E-06 2.3E-11 51.5 -1.6 22 137-158 4-25 (26)
21 KOG3993 Transcription factor ( 97.9 5.4E-06 1.2E-10 78.8 1.4 141 121-265 273-476 (500)
22 KOG3993 Transcription factor ( 97.8 3E-06 6.4E-11 80.6 -0.5 99 147-245 267-382 (500)
23 PHA00732 hypothetical protein 97.8 1.3E-05 2.9E-10 60.0 2.9 23 147-169 1-23 (79)
24 PF00096 zf-C2H2: Zinc finger, 97.8 1E-05 2.2E-10 45.7 1.3 23 220-242 1-23 (23)
25 PF13912 zf-C2H2_6: C2H2-type 97.6 4.1E-05 8.9E-10 45.0 1.7 26 219-244 1-26 (27)
26 PF00096 zf-C2H2: Zinc finger, 97.4 5.2E-05 1.1E-09 42.7 0.9 23 148-170 1-23 (23)
27 PF13894 zf-C2H2_4: C2H2-type 97.4 9.7E-05 2.1E-09 41.7 1.7 24 220-243 1-24 (24)
28 COG5189 SFP1 Putative transcri 97.4 0.00011 2.3E-09 67.8 2.5 69 145-239 347-418 (423)
29 COG5189 SFP1 Putative transcri 97.3 9.9E-05 2.1E-09 68.0 1.4 63 102-168 342-419 (423)
30 PF13912 zf-C2H2_6: C2H2-type 97.2 0.00018 3.9E-09 42.2 1.3 25 147-171 1-25 (27)
31 PF12756 zf-C2H2_2: C2H2 type 97.0 0.00041 8.8E-09 53.8 2.6 74 149-243 1-74 (100)
32 PHA00732 hypothetical protein 97.0 0.00057 1.2E-08 51.2 2.6 37 219-258 1-38 (79)
33 PF05605 zf-Di19: Drought indu 96.9 0.001 2.3E-08 46.0 3.5 51 147-243 2-53 (54)
34 smart00355 ZnF_C2H2 zinc finge 96.8 0.00084 1.8E-08 38.3 2.0 25 220-244 1-25 (26)
35 PF09237 GAGA: GAGA factor; I 96.8 0.001 2.2E-08 44.7 2.4 34 214-247 19-52 (54)
36 PF13894 zf-C2H2_4: C2H2-type 96.8 0.00071 1.5E-08 38.0 1.3 23 148-170 1-23 (24)
37 smart00355 ZnF_C2H2 zinc finge 96.3 0.0027 6E-08 36.0 1.9 24 148-171 1-24 (26)
38 PF12874 zf-met: Zinc-finger o 96.0 0.0033 7.3E-08 35.9 1.3 23 220-242 1-23 (25)
39 COG5048 FOG: Zn-finger [Genera 96.0 0.0069 1.5E-07 58.8 4.0 131 121-253 295-452 (467)
40 PF09237 GAGA: GAGA factor; I 95.3 0.015 3.3E-07 39.1 2.5 32 144-175 21-52 (54)
41 PF12171 zf-C2H2_jaz: Zinc-fin 95.1 0.01 2.2E-07 34.7 1.1 22 220-241 2-23 (27)
42 PF12874 zf-met: Zinc-finger o 95.1 0.0098 2.1E-07 33.9 0.9 23 148-170 1-23 (25)
43 PF13909 zf-H2C2_5: C2H2-type 94.5 0.017 3.8E-07 32.6 1.0 23 220-243 1-23 (24)
44 KOG1146 Homeobox protein [Gene 94.4 0.027 5.8E-07 61.3 2.9 101 117-240 438-539 (1406)
45 PF12171 zf-C2H2_jaz: Zinc-fin 94.3 0.023 5.1E-07 33.2 1.3 22 148-169 2-23 (27)
46 PRK04860 hypothetical protein; 94.1 0.026 5.6E-07 48.2 1.6 37 146-186 118-156 (160)
47 KOG1146 Homeobox protein [Gene 93.0 0.15 3.2E-06 55.8 5.3 115 120-242 1233-1351(1406)
48 PRK04860 hypothetical protein; 92.7 0.066 1.4E-06 45.7 1.8 37 218-258 118-154 (160)
49 PF13913 zf-C2HC_2: zinc-finge 92.2 0.096 2.1E-06 30.1 1.5 21 220-241 3-23 (25)
50 KOG2893 Zn finger protein [Gen 92.0 0.058 1.3E-06 48.2 0.7 49 174-244 10-60 (341)
51 PF13909 zf-H2C2_5: C2H2-type 91.5 0.078 1.7E-06 29.8 0.7 23 148-171 1-23 (24)
52 smart00451 ZnF_U1 U1-like zinc 91.2 0.16 3.4E-06 31.3 1.9 23 219-241 3-25 (35)
53 PF13913 zf-C2HC_2: zinc-finge 90.3 0.19 4E-06 28.9 1.5 21 148-169 3-23 (25)
54 COG5048 FOG: Zn-finger [Genera 89.7 0.26 5.6E-06 47.7 2.9 55 200-254 298-358 (467)
55 PF05605 zf-Di19: Drought indu 89.0 0.4 8.8E-06 32.9 2.7 36 219-255 2-39 (54)
56 PF12756 zf-C2H2_2: C2H2 type 88.7 0.23 5.1E-06 38.0 1.5 24 147-170 50-73 (100)
57 smart00451 ZnF_U1 U1-like zinc 87.4 0.35 7.5E-06 29.7 1.4 23 147-169 3-25 (35)
58 KOG2231 Predicted E3 ubiquitin 86.1 0.57 1.2E-05 48.4 2.9 41 179-223 188-240 (669)
59 KOG1280 Uncharacterized conser 83.6 3 6.5E-05 39.6 6.1 26 146-171 78-104 (381)
60 COG4049 Uncharacterized protei 75.2 1.2 2.7E-05 30.6 0.6 29 141-169 11-39 (65)
61 KOG2071 mRNA cleavage and poly 74.7 3.3 7.2E-05 42.1 3.7 27 145-171 416-442 (579)
62 COG5236 Uncharacterized conser 73.9 2.4 5.1E-05 40.2 2.3 26 148-173 152-179 (493)
63 PF02892 zf-BED: BED zinc fing 73.7 2.4 5.3E-05 27.6 1.8 25 216-240 13-41 (45)
64 smart00614 ZnF_BED BED zinc fi 70.1 3.1 6.8E-05 27.9 1.7 25 219-243 18-48 (50)
65 KOG2231 Predicted E3 ubiquitin 65.1 3.9 8.4E-05 42.5 1.9 19 149-168 117-135 (669)
66 COG4049 Uncharacterized protei 63.7 2.7 5.9E-05 28.9 0.4 31 212-242 10-40 (65)
67 PF09986 DUF2225: Uncharacteri 62.1 4.6 0.0001 36.2 1.6 24 145-168 3-26 (214)
68 PF05443 ROS_MUCR: ROS/MUCR tr 58.6 4.1 9E-05 33.6 0.6 28 217-247 70-97 (132)
69 cd00350 rubredoxin_like Rubred 58.4 6.8 0.00015 23.9 1.4 12 220-231 2-13 (33)
70 KOG2482 Predicted C2H2-type Zn 57.7 9.7 0.00021 36.2 3.0 22 220-241 280-301 (423)
71 KOG4167 Predicted DNA-binding 56.9 2.1 4.5E-05 44.5 -1.7 26 219-244 792-817 (907)
72 PF05443 ROS_MUCR: ROS/MUCR tr 55.8 6 0.00013 32.6 1.2 26 146-174 71-96 (132)
73 KOG3648 Golgi apparatus protei 55.7 5.4 0.00012 40.9 1.1 21 317-337 74-94 (1179)
74 COG4957 Predicted transcriptio 52.0 6.8 0.00015 32.2 0.9 25 220-247 77-101 (148)
75 cd00729 rubredoxin_SM Rubredox 51.6 9.8 0.00021 23.4 1.4 26 219-256 2-27 (34)
76 PF09538 FYDLN_acid: Protein o 48.4 13 0.00028 29.5 1.9 15 146-160 25-39 (108)
77 smart00734 ZnF_Rad18 Rad18-lik 47.5 14 0.0003 21.3 1.5 20 220-240 2-21 (26)
78 COG1592 Rubrerythrin [Energy p 47.3 13 0.00029 31.8 2.0 26 218-256 133-158 (166)
79 TIGR00622 ssl1 transcription f 45.6 44 0.00094 26.7 4.5 27 217-243 79-105 (112)
80 PF06524 NOA36: NOA36 protein; 45.4 16 0.00034 33.5 2.2 20 67-86 152-171 (314)
81 PF12013 DUF3505: Protein of u 44.9 14 0.00031 29.0 1.7 25 220-244 81-109 (109)
82 KOG4167 Predicted DNA-binding 44.3 4 8.8E-05 42.4 -1.9 26 146-171 791-816 (907)
83 KOG2186 Cell growth-regulating 44.2 8.1 0.00017 35.2 0.2 25 218-243 28-52 (276)
84 KOG4407 Predicted Rho GTPase-a 43.7 9.9 0.00021 42.3 0.8 6 311-316 319-324 (1973)
85 KOG1883 Cofactor required for 43.4 12 0.00027 41.0 1.4 10 336-345 1462-1471(1517)
86 PF11787 Aft1_HRR: Aft1 HRR do 42.7 15 0.00033 27.1 1.4 18 70-87 58-76 (76)
87 KOG2893 Zn finger protein [Gen 41.2 6.7 0.00015 35.3 -0.8 42 121-170 16-58 (341)
88 COG4957 Predicted transcriptio 40.4 12 0.00027 30.7 0.7 25 147-174 76-100 (148)
89 PF09416 UPF1_Zn_bind: RNA hel 40.2 21 0.00045 30.2 2.0 18 142-159 9-26 (152)
90 COG1198 PriA Primosomal protei 39.5 22 0.00048 37.8 2.6 43 118-226 438-482 (730)
91 PF09845 DUF2072: Zn-ribbon co 39.4 14 0.0003 30.3 0.8 15 219-233 1-15 (131)
92 KOG2785 C2H2-type Zn-finger pr 38.8 16 0.00035 35.3 1.3 76 148-240 4-89 (390)
93 smart00834 CxxC_CXXC_SSSS Puta 36.5 15 0.00032 23.1 0.5 16 146-161 4-19 (41)
94 KOG2186 Cell growth-regulating 35.3 20 0.00043 32.8 1.2 38 220-259 4-41 (276)
95 PTZ00303 phosphatidylinositol 34.8 21 0.00045 37.8 1.5 13 148-160 461-473 (1374)
96 PF08790 zf-LYAR: LYAR-type C2 34.3 13 0.00028 21.9 -0.0 23 220-243 1-23 (28)
97 KOG0978 E3 ubiquitin ligase in 33.7 10 0.00022 39.8 -1.0 21 218-238 677-697 (698)
98 PF11179 DUF2967: Protein of u 32.1 20 0.00044 31.1 0.8 19 317-335 155-173 (258)
99 PF13717 zinc_ribbon_4: zinc-r 32.0 32 0.0007 21.4 1.5 14 145-158 23-36 (36)
100 PRK00464 nrdR transcriptional 31.9 22 0.00048 30.1 0.9 21 146-166 27-47 (154)
101 PF09723 Zn-ribbon_8: Zinc rib 31.7 19 0.00042 23.2 0.4 16 146-161 4-19 (42)
102 KOG0978 E3 ubiquitin ligase in 31.7 8 0.00017 40.5 -2.1 48 110-166 644-697 (698)
103 PRK14873 primosome assembly pr 31.6 23 0.0005 37.4 1.2 11 218-228 421-431 (665)
104 PF10571 UPF0547: Uncharacteri 31.4 24 0.00053 20.3 0.8 11 220-230 15-25 (26)
105 PTZ00186 heat shock 70 kDa pre 31.1 18 0.00039 38.1 0.3 12 320-331 640-651 (657)
106 KOG0320 Predicted E3 ubiquitin 30.9 13 0.00028 32.1 -0.6 43 105-157 127-177 (187)
107 KOG4173 Alpha-SNAP protein [In 30.7 14 0.0003 32.7 -0.5 45 149-193 108-166 (253)
108 PF13719 zinc_ribbon_5: zinc-r 30.7 33 0.00072 21.4 1.4 16 215-230 21-36 (37)
109 COG3364 Zn-ribbon containing p 30.2 26 0.00056 27.4 1.0 17 219-235 2-18 (112)
110 PF04959 ARS2: Arsenite-resist 30.2 15 0.00032 32.9 -0.4 31 216-246 74-104 (214)
111 KOG2636 Splicing factor 3a, su 29.6 32 0.00068 34.0 1.7 29 212-240 394-423 (497)
112 PF06524 NOA36: NOA36 protein; 29.4 33 0.00071 31.5 1.6 28 216-243 206-233 (314)
113 KOG4124 Putative transcription 29.2 18 0.00039 34.5 -0.0 24 215-238 394-417 (442)
114 KOG2071 mRNA cleavage and poly 29.1 29 0.00063 35.5 1.4 28 217-244 416-443 (579)
115 TIGR02300 FYDLN_acid conserved 29.1 42 0.00091 27.4 2.0 17 146-162 25-41 (129)
116 KOG2482 Predicted C2H2-type Zn 29.1 37 0.00081 32.4 2.0 27 219-245 195-223 (423)
117 PHA03308 transcriptional regul 28.6 33 0.00071 36.0 1.7 7 84-90 1290-1296(1463)
118 KOG2461 Transcription factor B 28.2 2.1E+02 0.0045 28.2 7.1 68 140-227 324-395 (396)
119 TIGR02098 MJ0042_CXXC MJ0042 f 28.1 31 0.00067 21.4 0.9 12 147-158 25-36 (38)
120 COG1773 Rubredoxin [Energy pro 27.1 26 0.00057 24.2 0.5 15 218-232 2-16 (55)
121 TIGR02605 CxxC_CxxC_SSSS putat 26.7 27 0.00058 23.3 0.5 15 146-160 4-18 (52)
122 PF12013 DUF3505: Protein of u 26.2 40 0.00087 26.4 1.5 26 147-172 80-109 (109)
123 smart00154 ZnF_AN1 AN1-like Zi 25.7 36 0.00077 21.6 0.9 14 219-232 12-25 (39)
124 PF09986 DUF2225: Uncharacteri 25.0 18 0.00038 32.4 -0.9 43 217-259 3-60 (214)
125 PHA00626 hypothetical protein 24.6 36 0.00079 23.6 0.8 15 218-232 22-36 (59)
126 PF13451 zf-trcl: Probable zin 24.4 34 0.00073 23.1 0.6 16 217-232 2-17 (49)
127 cd00924 Cyt_c_Oxidase_Vb Cytoc 24.4 38 0.00082 26.4 1.0 21 210-231 71-91 (97)
128 COG5152 Uncharacterized conser 23.1 17 0.00037 31.9 -1.3 24 108-131 195-224 (259)
129 PF15269 zf-C2H2_7: Zinc-finge 22.5 55 0.0012 21.6 1.3 22 220-241 21-42 (54)
130 PF13878 zf-C2H2_3: zinc-finge 22.5 61 0.0013 20.8 1.5 24 148-171 14-39 (41)
131 PF07754 DUF1610: Domain of un 22.4 42 0.00091 19.1 0.7 10 146-155 15-24 (24)
132 PF04641 Rtf2: Rtf2 RING-finge 21.8 53 0.0011 30.2 1.6 53 144-232 110-163 (260)
133 PF11931 DUF3449: Domain of un 21.5 31 0.00067 30.4 0.0 27 213-239 95-122 (196)
134 KOG4124 Putative transcription 21.5 43 0.00093 32.1 0.9 58 107-168 347-419 (442)
135 COG1997 RPL43A Ribosomal prote 21.2 49 0.0011 25.1 1.0 11 146-156 34-44 (89)
136 COG5188 PRP9 Splicing factor 3 21.2 53 0.0011 31.5 1.4 29 212-240 367-396 (470)
137 TIGR00373 conserved hypothetic 20.9 51 0.0011 27.9 1.2 34 214-256 104-137 (158)
138 PRK06266 transcription initiat 20.5 49 0.0011 28.7 1.0 34 215-257 113-146 (178)
No 1
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.90 E-value=2.2e-24 Score=192.51 Aligned_cols=129 Identities=18% Similarity=0.242 Sum_probs=111.8
Q ss_pred cccccccCCCCCCCCccccCcccccccccccccCCCCCcccccCCCCCccCCchhHhhhhhhcCCCccccC--CCccCCC
Q 045639 108 EIAQLQINNNVNNSGMKFNSRRFLEAPGTGTGTGKGGCYVYECKTCNRTFPSFQALGGHRASHKKPKAMLM--NDDRLSL 185 (348)
Q Consensus 108 ~~~~c~~~~~~~~c~~~f~~~~~l~~~~~~h~~~h~g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c--C~~~f~~ 185 (348)
..|+|+. ||+.|...++|-+|...|.-. ...+.+.|++|||.|.+..+|+.|+++|+ -++.| |||.|.+
T Consensus 129 ~r~~c~e------Cgk~ysT~snLsrHkQ~H~~~-~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSR 199 (279)
T KOG2462|consen 129 PRYKCPE------CGKSYSTSSNLSRHKQTHRSL-DSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSR 199 (279)
T ss_pred Cceeccc------cccccccccccchhhcccccc-cccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccc
Confidence 3566766 899999999996664444322 23788999999999999999999999998 46677 9999998
Q ss_pred hHHHHhhhcccccCCCCCchhhccccccCCCCCceeccccCcccCChhHHHhHhhhcCCCCCCcccccccccCCCCCC
Q 045639 186 KSQHQQQQQQQFLVSKSDDEEEDGNFRNGNSSKVHECSICGAEFTSGQALGGHMRRHRSAPVAATAAAMATTNTTLSL 263 (348)
Q Consensus 186 ~~~L~~H~~~~~C~~f~~~~~L~~H~~~H~~ekp~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~~~~~~ 263 (348)
.+- |+.|+|+|||||||.|..|+|+|..+++|+.||++|.+.|.|.|..|+++|....-|
T Consensus 200 PWL------------------LQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyL 259 (279)
T KOG2462|consen 200 PWL------------------LQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYL 259 (279)
T ss_pred hHH------------------hhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHH
Confidence 876 778889999999999999999999999999999999999999999999999866555
No 2
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.82 E-value=1.6e-21 Score=174.33 Aligned_cols=111 Identities=21% Similarity=0.327 Sum_probs=96.0
Q ss_pred cccccc---CccccccccCCCCCCCCccccCcccccccccccccCCCCCcccccCCCCCccCCchhHhhhhhhcCCCccc
Q 045639 100 HYDIHE---QEEIAQLQINNNVNNSGMKFNSRRFLEAPGTGTGTGKGGCYVYECKTCNRTFPSFQALGGHRASHKKPKAM 176 (348)
Q Consensus 100 h~~~h~---~e~~~~c~~~~~~~~c~~~f~~~~~l~~~~~~h~~~h~g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~ 176 (348)
|+.+|. ..+.+.|.. |+|.|.+-..|..| +++|+ -+++|.+|||.|.+..-|.+|+|+|+|||||
T Consensus 149 HkQ~H~~~~s~ka~~C~~------C~K~YvSmpALkMH----irTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF 216 (279)
T KOG2462|consen 149 HKQTHRSLDSKKAFSCKY------CGKVYVSMPALKMH----IRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPF 216 (279)
T ss_pred hhcccccccccccccCCC------CCceeeehHHHhhH----hhccC--CCcccccccccccchHHhhcccccccCCCCc
Confidence 666663 245567776 88999998888554 44555 6999999999999999999999999999999
Q ss_pred cC--CCccCCChHHHHhhhcccccCCCCCchhhccccccCCCCCceeccccCcccCChhHHHhHhh
Q 045639 177 LM--NDDRLSLKSQHQQQQQQQFLVSKSDDEEEDGNFRNGNSSKVHECSICGAEFTSGQALGGHMR 240 (348)
Q Consensus 177 ~c--C~~~f~~~~~L~~H~~~~~C~~f~~~~~L~~H~~~H~~ekp~~C~~Cgk~F~~~~~L~~H~r 240 (348)
.| |++.|..+++ |+.||++|.+.|+|+|..|+|.|...+.|.+|..
T Consensus 217 ~C~hC~kAFADRSN------------------LRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 217 SCPHCGKAFADRSN------------------LRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE 264 (279)
T ss_pred cCCcccchhcchHH------------------HHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence 99 9999999998 6667799999999999999999999999999964
No 3
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.57 E-value=7.8e-16 Score=154.57 Aligned_cols=64 Identities=22% Similarity=0.395 Sum_probs=51.9
Q ss_pred CCCCchhhccccccCCCCCceeccccCcccCChhHHHhHhhhcCCCC----CCccc---ccccccCCCCCC
Q 045639 200 SKSDDEEEDGNFRNGNSSKVHECSICGAEFTSGQALGGHMRRHRSAP----VAATA---AAMATTNTTLSL 263 (348)
Q Consensus 200 ~f~~~~~L~~H~~~H~~ekp~~C~~Cgk~F~~~~~L~~H~r~H~~~~----~~~~~---~~~~~~~~~~~~ 263 (348)
.+.-.+.|+.|.|+|+|||||+|.|||+.|+++.+|+.||-+|.... .+.|+ +|..-|.....+
T Consensus 614 VlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~l 684 (958)
T KOG1074|consen 614 VLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTL 684 (958)
T ss_pred cccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccccccc
Confidence 34455679999999999999999999999999999999999997654 35666 666666655544
No 4
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.53 E-value=6.2e-15 Score=148.19 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=59.3
Q ss_pred ccccccCccccccccCCCCCCCCccccCcccccccccccccCCCCCcccccC---CCCCccCCchhHhhhhhhcC
Q 045639 100 HYDIHEQEEIAQLQINNNVNNSGMKFNSRRFLEAPGTGTGTGKGGCYVYECK---TCNRTFPSFQALGGHRASHK 171 (348)
Q Consensus 100 h~~~h~~e~~~~c~~~~~~~~c~~~f~~~~~l~~~~~~h~~~h~g~kpy~C~---~Cgk~F~s~~~L~~H~~~H~ 171 (348)
|.|+|+||+||+|.+ ||+.|..+.+|+.|+..|...+.-.-.|.|+ +|-+.|...-.|..|+++|.
T Consensus 624 HyrtHtGERPFkCKi------CgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn~V~lpQhIriH~ 692 (958)
T KOG1074|consen 624 HYRTHTGERPFKCKI------CGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTNAVTLPQHIRIHL 692 (958)
T ss_pred hhhcccCcCcccccc------ccchhccccchhhcccccccCccccccccCCchhhhcccccccccccceEEeec
Confidence 889999999999998 8899999999999888887777777789999 89999999999999999997
No 5
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.48 E-value=5e-15 Score=126.70 Aligned_cols=97 Identities=20% Similarity=0.318 Sum_probs=83.0
Q ss_pred CCcccccCCCCCccCCchhHhhhhhhcCCCccccC--CCccCCChHHHHhhhcccccCCCCCchhhccccccCCCCCcee
Q 045639 144 GCYVYECKTCNRTFPSFQALGGHRASHKKPKAMLM--NDDRLSLKSQHQQQQQQQFLVSKSDDEEEDGNFRNGNSSKVHE 221 (348)
Q Consensus 144 g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c--C~~~f~~~~~L~~H~~~~~C~~f~~~~~L~~H~~~H~~ekp~~ 221 (348)
+...|.|.+|+|.|.-..-|.+|++-|...|.+.| ||+.|..... |++|+|+|+|.+||+
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfd------------------lkrh~rthtgvrpyk 175 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFD------------------LKRHTRTHTGVRPYK 175 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhh------------------hhhhhccccCccccc
Confidence 45679999999999999999999999998888777 9999888776 777889999999999
Q ss_pred ccccCcccCChhHHHhHhh-hcC----------CCCCCcccccccccC
Q 045639 222 CSICGAEFTSGQALGGHMR-RHR----------SAPVAATAAAMATTN 258 (348)
Q Consensus 222 C~~Cgk~F~~~~~L~~H~r-~H~----------~~~~~~~~~~~~~~~ 258 (348)
|+.|+|+|+++-.|..|.+ +|. .+|.|.|..|+-+..
T Consensus 176 c~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~ 223 (267)
T KOG3576|consen 176 CSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSE 223 (267)
T ss_pred hhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCC
Confidence 9999999999999999976 442 356788998876543
No 6
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.42 E-value=2.5e-14 Score=141.70 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=75.1
Q ss_pred CCCCcccccCCCCCccCCchhHhhhhhhcCCCccccC--CCccCCChHHHHhhhcccccCCCCCchhhccccccCCCCCc
Q 045639 142 KGGCYVYECKTCNRTFPSFQALGGHRASHKKPKAMLM--NDDRLSLKSQHQQQQQQQFLVSKSDDEEEDGNFRNGNSSKV 219 (348)
Q Consensus 142 h~g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c--C~~~f~~~~~L~~H~~~~~C~~f~~~~~L~~H~~~H~~ekp 219 (348)
.+.+.+|.|+.|+|.|...+.|.+|.--|+|.+||.| |.|.|.++-+ |..|+|.|.||||
T Consensus 889 kte~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHH------------------LtEHkRLHSGEKP 950 (1007)
T KOG3623|consen 889 KTEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHH------------------LTEHKRLHSGEKP 950 (1007)
T ss_pred cCccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhh------------------hhhhhhhccCCCc
Confidence 3456789999999999999999999999999999999 9999999887 6677799999999
Q ss_pred eeccccCcccCChhHHHhHhh
Q 045639 220 HECSICGAEFTSGQALGGHMR 240 (348)
Q Consensus 220 ~~C~~Cgk~F~~~~~L~~H~r 240 (348)
|.|+.|+|+|+....+..||.
T Consensus 951 fQCdKClKRFSHSGSYSQHMN 971 (1007)
T KOG3623|consen 951 FQCDKCLKRFSHSGSYSQHMN 971 (1007)
T ss_pred chhhhhhhhcccccchHhhhc
Confidence 999999999999999999996
No 7
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.39 E-value=4e-14 Score=121.21 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=97.7
Q ss_pred ccccccccCCCCCCCCccccCcccccccccccccCCCCCcccccCCCCCccCCchhHhhhhhhcCCCccccC--CCccCC
Q 045639 107 EEIAQLQINNNVNNSGMKFNSRRFLEAPGTGTGTGKGGCYVYECKTCNRTFPSFQALGGHRASHKKPKAMLM--NDDRLS 184 (348)
Q Consensus 107 e~~~~c~~~~~~~~c~~~f~~~~~l~~~~~~h~~~h~g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c--C~~~f~ 184 (348)
...|-|.+ |+|.|.-++.| .+|++-|...+.|-|..|||.|..--+|++|.|+|+|.+||+| |++.|.
T Consensus 115 ~d~ftCrv------CgK~F~lQRml----nrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaft 184 (267)
T KOG3576|consen 115 QDSFTCRV------CGKKFGLQRML----NRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFT 184 (267)
T ss_pred CCeeeeeh------hhhhhhHHHHH----HHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHH
Confidence 44567776 89999998888 4566688888999999999999999999999999999999999 999999
Q ss_pred ChHHHHhhhcccccCCCCCchhhccccccC------CCCCceeccccCcccCChhHHHhHhhhcCCCC
Q 045639 185 LKSQHQQQQQQQFLVSKSDDEEEDGNFRNG------NSSKVHECSICGAEFTSGQALGGHMRRHRSAP 246 (348)
Q Consensus 185 ~~~~L~~H~~~~~C~~f~~~~~L~~H~~~H------~~ekp~~C~~Cgk~F~~~~~L~~H~r~H~~~~ 246 (348)
+...|..|.+ +.|-..| ..+|.|.|..||..-.....+..|.+.|+...
T Consensus 185 qrcsleshl~-------------kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S 239 (267)
T KOG3576|consen 185 QRCSLESHLK-------------KVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS 239 (267)
T ss_pred hhccHHHHHH-------------HHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence 9999888864 1111111 24688999999999999999999999988654
No 8
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.37 E-value=6.8e-14 Score=128.66 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=72.3
Q ss_pred CCCccccCcccccccccccccCCCCCcccccCCCCCccCCchhHhhhhhhc--CCCccccC--CCccCCChHHHHhhhc-
Q 045639 120 NSGMKFNSRRFLEAPGTGTGTGKGGCYVYECKTCNRTFPSFQALGGHRASH--KKPKAMLM--NDDRLSLKSQHQQQQQ- 194 (348)
Q Consensus 120 ~c~~~f~~~~~l~~~~~~h~~~h~g~kpy~C~~Cgk~F~s~~~L~~H~~~H--~~~k~~~c--C~~~f~~~~~L~~H~~- 194 (348)
+|-+.|-++..| +.|++.|++||...|..||.-|.++..|-.|.+.- ....+|.| |.|.|....-|..|+.
T Consensus 184 ~Ct~~~~~k~~L----reH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~r 259 (467)
T KOG3608|consen 184 MCTKHMGNKYRL----REHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVR 259 (467)
T ss_pred hhhhhhccHHHH----HHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHH
Confidence 355566666666 45555667777777777777777776676665532 23345666 6666666666665554
Q ss_pred ---ccccC----CCCCchhhcccccc-CCCCCceeccccCcccCChhHHHhHhhhcC
Q 045639 195 ---QQFLV----SKSDDEEEDGNFRN-GNSSKVHECSICGAEFTSGQALGGHMRRHR 243 (348)
Q Consensus 195 ---~~~C~----~f~~~~~L~~H~~~-H~~ekp~~C~~Cgk~F~~~~~L~~H~r~H~ 243 (348)
.|+|. .....+.|.+|++. |...|||+|+.|.+.|.+.+.|.+|..+|.
T Consensus 260 Hvn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS 316 (467)
T KOG3608|consen 260 HVNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS 316 (467)
T ss_pred hhhcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc
Confidence 45554 44555556666553 555666666666666666666666655443
No 9
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.31 E-value=1.6e-13 Score=126.16 Aligned_cols=156 Identities=14% Similarity=0.128 Sum_probs=123.7
Q ss_pred ccccccCccccccccCCCCCCCCccccCcccccccccccccCCCCCcccccCCCCCccCCchhHhhhhhhcCCCccccCC
Q 045639 100 HYDIHEQEEIAQLQINNNVNNSGMKFNSRRFLEAPGTGTGTGKGGCYVYECKTCNRTFPSFQALGGHRASHKKPKAMLMN 179 (348)
Q Consensus 100 h~~~h~~e~~~~c~~~~~~~~c~~~f~~~~~l~~~~~~h~~~h~g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~cC 179 (348)
|.++|++||..+|.. ||.-|..+..|-.|.++. .-....+|.|..|.|.|.+...|..|++.|..-..+.-|
T Consensus 198 H~r~Hs~eKvvACp~------Cg~~F~~~tkl~DH~rRq--t~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplC 269 (467)
T KOG3608|consen 198 HIRTHSNEKVVACPH------CGELFRTKTKLFDHLRRQ--TELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLC 269 (467)
T ss_pred HHHhcCCCeEEecch------HHHHhccccHHHHHHHhh--hhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhccccccc
Confidence 889999999999998 778898887775554421 112345899999999999999999999988765444448
Q ss_pred CccCCChHHHHhhhc-------ccccC----CCCCchhhccccccCCCCCceeccc--cCcccCChhHHHhHhhhcC-CC
Q 045639 180 DDRLSLKSQHQQQQQ-------QQFLV----SKSDDEEEDGNFRNGNSSKVHECSI--CGAEFTSGQALGGHMRRHR-SA 245 (348)
Q Consensus 180 ~~~f~~~~~L~~H~~-------~~~C~----~f~~~~~L~~H~~~H~~ekp~~C~~--Cgk~F~~~~~L~~H~r~H~-~~ 245 (348)
+.+....+.|..|++ ||+|. .+...+.|.+|..+|. +-.|.|.. |..+|.+...|++|++.+. |.
T Consensus 270 dmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~ 348 (467)
T KOG3608|consen 270 DMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGN 348 (467)
T ss_pred ccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCC
Confidence 888888888988886 88886 6777888999998888 67799987 9999999999999988654 43
Q ss_pred --CCCcccccccccCCCCCCC
Q 045639 246 --PVAATAAAMATTNTTLSLT 264 (348)
Q Consensus 246 --~~~~~~~~~~~~~~~~~~~ 264 (348)
.+|.|-.|...+.+..+|+
T Consensus 349 np~~Y~CH~Cdr~ft~G~~L~ 369 (467)
T KOG3608|consen 349 NPILYACHCCDRFFTSGKSLS 369 (467)
T ss_pred CCCceeeecchhhhccchhHH
Confidence 4688888888888776664
No 10
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.20 E-value=1.6e-12 Score=129.09 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=72.4
Q ss_pred cCccccccccCCCCCCCCccccCcccccccccccccCCCCCcccccCCCCCccCCchhHhhhhhhcCCCccccC--CCcc
Q 045639 105 EQEEIAQLQINNNVNNSGMKFNSRRFLEAPGTGTGTGKGGCYVYECKTCNRTFPSFQALGGHRASHKKPKAMLM--NDDR 182 (348)
Q Consensus 105 ~~e~~~~c~~~~~~~~c~~~f~~~~~l~~~~~~h~~~h~g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c--C~~~ 182 (348)
+.+-.|.|+. |.|.|...+.| .+|.--|+|.+||+|.+|.|+|..+..|..|+|.|.|+|||.| |+|.
T Consensus 890 te~gmyaCDq------CDK~FqKqSSL----aRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKR 959 (1007)
T KOG3623|consen 890 TEDGMYACDQ------CDKAFQKQSSL----ARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKR 959 (1007)
T ss_pred CccccchHHH------HHHHHHhhHHH----HHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhh
Confidence 4456899999 66999999998 5677789999999999999999999999999999999999999 9999
Q ss_pred CCChHHHHhhhc
Q 045639 183 LSLKSQHQQQQQ 194 (348)
Q Consensus 183 f~~~~~L~~H~~ 194 (348)
|.+...+.+||.
T Consensus 960 FSHSGSYSQHMN 971 (1007)
T KOG3623|consen 960 FSHSGSYSQHMN 971 (1007)
T ss_pred cccccchHhhhc
Confidence 999998877773
No 11
>PHA00733 hypothetical protein
Probab=98.74 E-value=5.3e-09 Score=86.01 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=59.5
Q ss_pred CcccccCCCCCccCCchhHhhh--hh---hcCCCccccC--CCccCCChHHHHhhhcccccCCCCCchhhccccccCCCC
Q 045639 145 CYVYECKTCNRTFPSFQALGGH--RA---SHKKPKAMLM--NDDRLSLKSQHQQQQQQQFLVSKSDDEEEDGNFRNGNSS 217 (348)
Q Consensus 145 ~kpy~C~~Cgk~F~s~~~L~~H--~~---~H~~~k~~~c--C~~~f~~~~~L~~H~~~~~C~~f~~~~~L~~H~~~H~~e 217 (348)
.+++.|.+|.+.|.....|..| ++ .+.+.++|.| |++.|.....|..| ++.| +
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H------------------~r~h--~ 97 (128)
T PHA00733 38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQH------------------IRYT--E 97 (128)
T ss_pred hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHH------------------HhcC--C
Confidence 4678888888888877777666 21 2345677877 88888888775544 3444 3
Q ss_pred CceeccccCcccCChhHHHhHhhhcCC
Q 045639 218 KVHECSICGAEFTSGQALGGHMRRHRS 244 (348)
Q Consensus 218 kp~~C~~Cgk~F~~~~~L~~H~r~H~~ 244 (348)
++|.|.+|++.|.....|..|++..++
T Consensus 98 ~~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 98 HSKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred cCccCCCCCCccCCHHHHHHHHHHhcC
Confidence 579999999999999999999887654
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.65 E-value=3.8e-08 Score=98.61 Aligned_cols=93 Identities=13% Similarity=0.174 Sum_probs=73.6
Q ss_pred CcccccCCCCCccCCchhHhhhhhhcCCCccccC-CCccCCChHHHHhhhcccccCCCCCchhhccccccCCCCCceecc
Q 045639 145 CYVYECKTCNRTFPSFQALGGHRASHKKPKAMLM-NDDRLSLKSQHQQQQQQQFLVSKSDDEEEDGNFRNGNSSKVHECS 223 (348)
Q Consensus 145 ~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c-C~~~f~~~~~L~~H~~~~~C~~f~~~~~L~~H~~~H~~ekp~~C~ 223 (348)
++.+.|..|++.|. ...|..|+.+|+ +++.| |++.+ .+.. |..|+++|..+|++.|.
T Consensus 451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~CpCg~~~-~R~~------------------L~~H~~thCp~Kpi~C~ 508 (567)
T PLN03086 451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCPCGVVL-EKEQ------------------MVQHQASTCPLRLITCR 508 (567)
T ss_pred ccCccCCCCCCccc-hHHHHHHHHhcC--CCccCCCCCCc-chhH------------------HHhhhhccCCCCceeCC
Confidence 34468999999996 688999999986 56667 88654 3344 67778899999999999
Q ss_pred ccCcccCC----------hhHHHhHhhhcCCCCCCcccccccccCCC
Q 045639 224 ICGAEFTS----------GQALGGHMRRHRSAPVAATAAAMATTNTT 260 (348)
Q Consensus 224 ~Cgk~F~~----------~~~L~~H~r~H~~~~~~~~~~~~~~~~~~ 260 (348)
.|++.|.. ...|..|+..+ |.+++.|..|+..+...
T Consensus 509 fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr 554 (567)
T PLN03086 509 FCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK 554 (567)
T ss_pred CCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh
Confidence 99999953 34799999886 88899999998765543
No 13
>PHA02768 hypothetical protein; Provisional
Probab=98.57 E-value=2.3e-08 Score=68.74 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=36.3
Q ss_pred ccccCCCCCccCCchhHhhhhhhcCCCccccC--CCccCCChHHHH
Q 045639 147 VYECKTCNRTFPSFQALGGHRASHKKPKAMLM--NDDRLSLKSQHQ 190 (348)
Q Consensus 147 py~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c--C~~~f~~~~~L~ 190 (348)
-|+|++|||.|...++|..|+++|+ ++++| |++.|...+.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence 5899999999999999999999999 56777 999988776643
No 14
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.56 E-value=8.6e-09 Score=60.48 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=23.1
Q ss_pred hccccccCCCCCceeccccCcccCC
Q 045639 207 EDGNFRNGNSSKVHECSICGAEFTS 231 (348)
Q Consensus 207 L~~H~~~H~~ekp~~C~~Cgk~F~~ 231 (348)
|.+|+++|+|+|||.|++|++.|.+
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEESS
T ss_pred HHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 7889999999999999999999974
No 15
>PHA02768 hypothetical protein; Provisional
Probab=98.53 E-value=4.7e-08 Score=67.20 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=37.8
Q ss_pred ceeccccCcccCChhHHHhHhhhcCCCCCCcccccccccCCCCCCC
Q 045639 219 VHECSICGAEFTSGQALGGHMRRHRSAPVAATAAAMATTNTTLSLT 264 (348)
Q Consensus 219 p~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~~~~~~~ 264 (348)
-|+|++||+.|.+.++|..|||+|+ +++.|..|+..|.....+.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence 3899999999999999999999999 6788888888877655543
No 16
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.51 E-value=5.7e-08 Score=97.34 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=75.4
Q ss_pred ccccccccCCCCCCCCccccCcccccccccccccCCCCCcccccCCCCCccCCchhHhhhhhhcCCCccccC--CCccCC
Q 045639 107 EEIAQLQINNNVNNSGMKFNSRRFLEAPGTGTGTGKGGCYVYECKTCNRTFPSFQALGGHRASHKKPKAMLM--NDDRLS 184 (348)
Q Consensus 107 e~~~~c~~~~~~~~c~~~f~~~~~l~~~~~~h~~~h~g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c--C~~~f~ 184 (348)
++++.|.. |++.|. ...|+.| ...++ ++|.|+ ||+.| .+..|..|+++|.+.+++.| |++.|.
T Consensus 451 ~~H~~C~~------Cgk~f~-~s~LekH----~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 451 KNHVHCEK------CGQAFQ-QGEMEKH----MKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred ccCccCCC------CCCccc-hHHHHHH----HHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccc
Confidence 44455655 778885 4566555 34443 799999 99866 66899999999999999999 988874
Q ss_pred ChHHHHhhhcccccCCCCCchhhccccccCCCCCceeccccCcccCChhHHHhHhh
Q 045639 185 LKSQHQQQQQQQFLVSKSDDEEEDGNFRNGNSSKVHECSICGAEFTSGQALGGHMR 240 (348)
Q Consensus 185 ~~~~L~~H~~~~~C~~f~~~~~L~~H~~~H~~ekp~~C~~Cgk~F~~~~~L~~H~r 240 (348)
.-.... ..-.....|..|..++ |.+++.|..||+.|..+ .|..|+.
T Consensus 516 ~g~~~~--------d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~ 561 (567)
T PLN03086 516 AGGSAM--------DVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQI 561 (567)
T ss_pred cCcccc--------chhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHHH
Confidence 210000 0000012266777775 89999999999999886 5778865
No 17
>PHA00733 hypothetical protein
Probab=98.42 E-value=1.3e-07 Score=77.73 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=58.8
Q ss_pred cccccccCCCCCCCCccccCccccccc--ccccccCCCCCcccccCCCCCccCCchhHhhhhhhcCCCccccC--CCccC
Q 045639 108 EIAQLQINNNVNNSGMKFNSRRFLEAP--GTGTGTGKGGCYVYECKTCNRTFPSFQALGGHRASHKKPKAMLM--NDDRL 183 (348)
Q Consensus 108 ~~~~c~~~~~~~~c~~~f~~~~~l~~~--~~~h~~~h~g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c--C~~~f 183 (348)
+.+.|.+ |.+.|.....|..+ +.++...+ +.++|.|..||+.|.+...|..|++.|. .+|.| |++.|
T Consensus 39 ~~~~~~~------~~~~~~~~~~l~~~~~l~~~~~~~-~~kPy~C~~Cgk~Fss~s~L~~H~r~h~--~~~~C~~CgK~F 109 (128)
T PHA00733 39 KRLIRAV------VKTLIYNPQLLDESSYLYKLLTSK-AVSPYVCPLCLMPFSSSVSLKQHIRYTE--HSKVCPVCGKEF 109 (128)
T ss_pred hhHHHHH------HhhhccChhhhcchHHHHhhcccC-CCCCccCCCCCCcCCCHHHHHHHHhcCC--cCccCCCCCCcc
Confidence 4567776 55666665555443 23454444 4789999999999999999999999874 45777 99999
Q ss_pred CChHHHHhhhc
Q 045639 184 SLKSQHQQQQQ 194 (348)
Q Consensus 184 ~~~~~L~~H~~ 194 (348)
.....|..|+.
T Consensus 110 ~~~~sL~~H~~ 120 (128)
T PHA00733 110 RNTDSTLDHVC 120 (128)
T ss_pred CCHHHHHHHHH
Confidence 99999888863
No 18
>PHA00616 hypothetical protein
Probab=98.07 E-value=1.4e-06 Score=57.07 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=30.6
Q ss_pred ceeccccCcccCChhHHHhHhhhcCCCCCCccc
Q 045639 219 VHECSICGAEFTSGQALGGHMRRHRSAPVAATA 251 (348)
Q Consensus 219 p~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~ 251 (348)
||+|..||+.|...+.|..|++.|+|++++.+.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 699999999999999999999999999987664
No 19
>PHA00616 hypothetical protein
Probab=97.96 E-value=2.4e-06 Score=55.95 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=30.2
Q ss_pred ccccCCCCCccCCchhHhhhhhhcCCCccccC
Q 045639 147 VYECKTCNRTFPSFQALGGHRASHKKPKAMLM 178 (348)
Q Consensus 147 py~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c 178 (348)
||+|..||+.|..++.|..|++.|+|++++.|
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~ 32 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL 32 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence 69999999999999999999999999998876
No 20
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.89 E-value=1.1e-06 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=17.0
Q ss_pred ccccCCCCCcccccCCCCCccC
Q 045639 137 GTGTGKGGCYVYECKTCNRTFP 158 (348)
Q Consensus 137 ~h~~~h~g~kpy~C~~Cgk~F~ 158 (348)
+|+++|+|++||.|+.|++.|.
T Consensus 4 ~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 4 RHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHSSSSSEEESSSSEEES
T ss_pred HHhhhcCCCCCCCCCCCcCeeC
Confidence 4566788888888888888875
No 21
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=97.85 E-value=5.4e-06 Score=78.85 Aligned_cols=141 Identities=15% Similarity=0.104 Sum_probs=89.0
Q ss_pred CCccccCcccccccccccccCCCCCcccccCCCCCccCCchhHhhhhhhcCC----------------------------
Q 045639 121 SGMKFNSRRFLEAPGTGTGTGKGGCYVYECKTCNRTFPSFQALGGHRASHKK---------------------------- 172 (348)
Q Consensus 121 c~~~f~~~~~l~~~~~~h~~~h~g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~---------------------------- 172 (348)
|...|.+--.|-.|....| +| .-|+|.+|+|.|.-..+|..|+|+|+-
T Consensus 273 CK~kYeD~F~LAQHrC~RI-V~---vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rs 348 (500)
T KOG3993|consen 273 CKEKYEDAFALAQHRCPRI-VH---VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERS 348 (500)
T ss_pred HHHhhhhHHHHhhccCCee-EE---eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcccc
Confidence 5567777666766633111 12 459999999999999999999999951
Q ss_pred -----CccccC--CCccCCChHHHHhhhc------------c--cccC---CCCCchhhccccc---cCCCC--------
Q 045639 173 -----PKAMLM--NDDRLSLKSQHQQQQQ------------Q--QFLV---SKSDDEEEDGNFR---NGNSS-------- 217 (348)
Q Consensus 173 -----~k~~~c--C~~~f~~~~~L~~H~~------------~--~~C~---~f~~~~~L~~H~~---~H~~e-------- 217 (348)
+..|.| |+|.|+....|+.|+. + +.-. .+.....+..|.. +|..+
T Consensus 349 g~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sa 428 (500)
T KOG3993|consen 349 GDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSA 428 (500)
T ss_pred CCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeeccc
Confidence 113678 9999999999998853 0 0000 0111111111211 11111
Q ss_pred CceeccccCcccCChhHHHhHhhhcCCCCCCcccccccccCCCCCCCc
Q 045639 218 KVHECSICGAEFTSGQALGGHMRRHRSAPVAATAAAMATTNTTLSLTP 265 (348)
Q Consensus 218 kp~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~~~~~~~~ 265 (348)
.-..|.+||..|.++..-.+|.|.-..+..+.|..|.++|.....++.
T Consensus 429 el~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltr 476 (500)
T KOG3993|consen 429 ELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTR 476 (500)
T ss_pred cccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHh
Confidence 234577788888877777777776666677888888777766665543
No 22
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=97.84 E-value=3e-06 Score=80.56 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=67.8
Q ss_pred ccccCCCCCccCCchhHhhhhhhcCCCccccC--CCccCCChHHHHhhhcccccC---C--CCCc--------hhhcccc
Q 045639 147 VYECKTCNRTFPSFQALGGHRASHKKPKAMLM--NDDRLSLKSQHQQQQQQQFLV---S--KSDD--------EEEDGNF 211 (348)
Q Consensus 147 py~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c--C~~~f~~~~~L~~H~~~~~C~---~--f~~~--------~~L~~H~ 211 (348)
-|.|..|...|-..-.|..|+-.-.--.-|+| |+|.|....+|..|.|=++-. + -... ...+.-.
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~ 346 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE 346 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence 39999999999999999999864333344667 999999999999998711110 0 0000 0000000
Q ss_pred cc--CCCCCceeccccCcccCChhHHHhHhhhcCCC
Q 045639 212 RN--GNSSKVHECSICGAEFTSGQALGGHMRRHRSA 245 (348)
Q Consensus 212 ~~--H~~ekp~~C~~Cgk~F~~~~~L~~H~r~H~~~ 245 (348)
|. -..+-.|.|.+|||.|.+...|+.|+-+|...
T Consensus 347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~ 382 (500)
T KOG3993|consen 347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRA 382 (500)
T ss_pred ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence 10 02234799999999999999999998888643
No 23
>PHA00732 hypothetical protein
Probab=97.83 E-value=1.3e-05 Score=60.04 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=18.6
Q ss_pred ccccCCCCCccCCchhHhhhhhh
Q 045639 147 VYECKTCNRTFPSFQALGGHRAS 169 (348)
Q Consensus 147 py~C~~Cgk~F~s~~~L~~H~~~ 169 (348)
||.|..||+.|.+...|..|++.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~ 23 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARR 23 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhc
Confidence 57888888888888888888763
No 24
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.79 E-value=1e-05 Score=45.74 Aligned_cols=23 Identities=52% Similarity=1.012 Sum_probs=21.8
Q ss_pred eeccccCcccCChhHHHhHhhhc
Q 045639 220 HECSICGAEFTSGQALGGHMRRH 242 (348)
Q Consensus 220 ~~C~~Cgk~F~~~~~L~~H~r~H 242 (348)
|+|.+|++.|.+...|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 78999999999999999999876
No 25
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.56 E-value=4.1e-05 Score=45.00 Aligned_cols=26 Identities=46% Similarity=0.703 Sum_probs=24.3
Q ss_pred ceeccccCcccCChhHHHhHhhhcCC
Q 045639 219 VHECSICGAEFTSGQALGGHMRRHRS 244 (348)
Q Consensus 219 p~~C~~Cgk~F~~~~~L~~H~r~H~~ 244 (348)
||+|.+|++.|....+|..|++.|.+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 69999999999999999999999864
No 26
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.43 E-value=5.2e-05 Score=42.75 Aligned_cols=23 Identities=35% Similarity=0.768 Sum_probs=21.4
Q ss_pred cccCCCCCccCCchhHhhhhhhc
Q 045639 148 YECKTCNRTFPSFQALGGHRASH 170 (348)
Q Consensus 148 y~C~~Cgk~F~s~~~L~~H~~~H 170 (348)
|.|..|++.|.....|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 78999999999999999999875
No 27
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.38 E-value=9.7e-05 Score=41.68 Aligned_cols=24 Identities=46% Similarity=0.929 Sum_probs=20.3
Q ss_pred eeccccCcccCChhHHHhHhhhcC
Q 045639 220 HECSICGAEFTSGQALGGHMRRHR 243 (348)
Q Consensus 220 ~~C~~Cgk~F~~~~~L~~H~r~H~ 243 (348)
|.|++|++.|.+...|..|+++|.
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 789999999999999999999873
No 28
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.35 E-value=0.00011 Score=67.76 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=43.4
Q ss_pred CcccccCC--CCCccCCchhHhhhhhh-cCCCccccCCCccCCChHHHHhhhcccccCCCCCchhhccccccCCCCCcee
Q 045639 145 CYVYECKT--CNRTFPSFQALGGHRAS-HKKPKAMLMNDDRLSLKSQHQQQQQQQFLVSKSDDEEEDGNFRNGNSSKVHE 221 (348)
Q Consensus 145 ~kpy~C~~--Cgk~F~s~~~L~~H~~~-H~~~k~~~cC~~~f~~~~~L~~H~~~~~C~~f~~~~~L~~H~~~H~~ekp~~ 221 (348)
+|||+|++ |+|.+.....|+.|+.- |-..+...--. -..|.-.-...|||+
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~--------------------------p~~~~~F~~~~KPYr 400 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPS--------------------------PEKMNIFSAKDKPYR 400 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCC--------------------------ccccccccccCCcee
Confidence 47777776 77777777777777653 32222211000 001111234579999
Q ss_pred ccccCcccCChhHHHhHh
Q 045639 222 CSICGAEFTSGQALGGHM 239 (348)
Q Consensus 222 C~~Cgk~F~~~~~L~~H~ 239 (348)
|.+|+|+|....-|+-|.
T Consensus 401 CevC~KRYKNlNGLKYHr 418 (423)
T COG5189 401 CEVCDKRYKNLNGLKYHR 418 (423)
T ss_pred ccccchhhccCccceecc
Confidence 999999999988888874
No 29
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.28 E-value=9.9e-05 Score=67.97 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=48.3
Q ss_pred ccccCccccccccCCCCCCCCccccCccccccccc-cccc----------CCC----CCcccccCCCCCccCCchhHhhh
Q 045639 102 DIHEQEEIAQLQINNNVNNSGMKFNSRRFLEAPGT-GTGT----------GKG----GCYVYECKTCNRTFPSFQALGGH 166 (348)
Q Consensus 102 ~~h~~e~~~~c~~~~~~~~c~~~f~~~~~l~~~~~-~h~~----------~h~----g~kpy~C~~Cgk~F~s~~~L~~H 166 (348)
+.-.+++||+|.+. .|.|+|.++-.|+.|+. .|.. .+. ..|||.|.+|+|.+.....|+.|
T Consensus 342 l~v~d~KpykCpV~----gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYH 417 (423)
T COG5189 342 LKVKDGKPYKCPVE----GCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYH 417 (423)
T ss_pred eEeecCceecCCCC----CchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceec
Confidence 33345799999874 49999999999988854 3311 122 24899999999999999999999
Q ss_pred hh
Q 045639 167 RA 168 (348)
Q Consensus 167 ~~ 168 (348)
+.
T Consensus 418 r~ 419 (423)
T COG5189 418 RK 419 (423)
T ss_pred cc
Confidence 75
No 30
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.17 E-value=0.00018 Score=42.18 Aligned_cols=25 Identities=44% Similarity=0.877 Sum_probs=23.4
Q ss_pred ccccCCCCCccCCchhHhhhhhhcC
Q 045639 147 VYECKTCNRTFPSFQALGGHRASHK 171 (348)
Q Consensus 147 py~C~~Cgk~F~s~~~L~~H~~~H~ 171 (348)
||+|..|++.|.+..+|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 6899999999999999999999885
No 31
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.04 E-value=0.00041 Score=53.76 Aligned_cols=74 Identities=23% Similarity=0.383 Sum_probs=22.6
Q ss_pred ccCCCCCccCCchhHhhhhhhcCCCccccCCCccCCChHHHHhhhcccccCCCCCchhhccccccCCCCCceeccccCcc
Q 045639 149 ECKTCNRTFPSFQALGGHRASHKKPKAMLMNDDRLSLKSQHQQQQQQQFLVSKSDDEEEDGNFRNGNSSKVHECSICGAE 228 (348)
Q Consensus 149 ~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~cC~~~f~~~~~L~~H~~~~~C~~f~~~~~L~~H~~~H~~ekp~~C~~Cgk~ 228 (348)
+|..|+..|.+...|..|+....+-..- ....+..... +..+.+.- -...+.|.+|++.
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~--~~~~l~~~~~------------------~~~~~~~~-~~~~~~C~~C~~~ 59 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIP--DQKYLVDPNR------------------LLNYLRKK-VKESFRCPYCNKT 59 (100)
T ss_dssp ---------------------------------------------------------------------SSEEBSSSS-E
T ss_pred Cccccccccccccccccccccccccccc--cccccccccc------------------cccccccc-cCCCCCCCccCCC
Confidence 5899999999999999998653331110 0001111111 22222211 1236999999999
Q ss_pred cCChhHHHhHhhhcC
Q 045639 229 FTSGQALGGHMRRHR 243 (348)
Q Consensus 229 F~~~~~L~~H~r~H~ 243 (348)
|.+...|..||+.+.
T Consensus 60 f~s~~~l~~Hm~~~~ 74 (100)
T PF12756_consen 60 FRSREALQEHMRSKH 74 (100)
T ss_dssp ESSHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHcCcc
Confidence 999999999999764
No 32
>PHA00732 hypothetical protein
Probab=96.97 E-value=0.00057 Score=51.23 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=29.7
Q ss_pred ceeccccCcccCChhHHHhHhhh-cCCCCCCcccccccccC
Q 045639 219 VHECSICGAEFTSGQALGGHMRR-HRSAPVAATAAAMATTN 258 (348)
Q Consensus 219 p~~C~~Cgk~F~~~~~L~~H~r~-H~~~~~~~~~~~~~~~~ 258 (348)
||.|.+||+.|.+...|..|++. |.+ +.|..|+..+.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~ 38 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR 38 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC
Confidence 58899999999999999999884 654 46888887775
No 33
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=96.93 E-value=0.001 Score=46.01 Aligned_cols=51 Identities=27% Similarity=0.474 Sum_probs=36.3
Q ss_pred ccccCCCCCccCCchhHhhhhhh-cCCCccccCCCccCCChHHHHhhhcccccCCCCCchhhccccccCCCCCceecccc
Q 045639 147 VYECKTCNRTFPSFQALGGHRAS-HKKPKAMLMNDDRLSLKSQHQQQQQQQFLVSKSDDEEEDGNFRNGNSSKVHECSIC 225 (348)
Q Consensus 147 py~C~~Cgk~F~s~~~L~~H~~~-H~~~k~~~cC~~~f~~~~~L~~H~~~~~C~~f~~~~~L~~H~~~H~~ekp~~C~~C 225 (348)
.|.|+.|++ ..+...|..|... |.. ..+.+.|++|
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~-------------------------------------------~~~~v~CPiC 37 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRS-------------------------------------------ESKNVVCPIC 37 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcC-------------------------------------------CCCCccCCCc
Confidence 478999999 4556788888654 321 1246889999
Q ss_pred CcccCChhHHHhHhhhcC
Q 045639 226 GAEFTSGQALGGHMRRHR 243 (348)
Q Consensus 226 gk~F~~~~~L~~H~r~H~ 243 (348)
...+. .+|..|++.++
T Consensus 38 ~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 38 SSRVT--DNLIRHLNSQH 53 (54)
T ss_pred hhhhh--hHHHHHHHHhc
Confidence 98755 38999988754
No 34
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.81 E-value=0.00084 Score=38.25 Aligned_cols=25 Identities=44% Similarity=0.763 Sum_probs=22.7
Q ss_pred eeccccCcccCChhHHHhHhhhcCC
Q 045639 220 HECSICGAEFTSGQALGGHMRRHRS 244 (348)
Q Consensus 220 ~~C~~Cgk~F~~~~~L~~H~r~H~~ 244 (348)
|+|..|++.|.....|..|++.|..
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~~ 25 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHXX 25 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhcc
Confidence 6899999999999999999998753
No 35
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.79 E-value=0.001 Score=44.73 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=25.0
Q ss_pred CCCCCceeccccCcccCChhHHHhHhhhcCCCCC
Q 045639 214 GNSSKVHECSICGAEFTSGQALGGHMRRHRSAPV 247 (348)
Q Consensus 214 H~~ekp~~C~~Cgk~F~~~~~L~~H~r~H~~~~~ 247 (348)
+..+.|..|++|+..+.+..+|++|+.++++.||
T Consensus 19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 3457899999999999999999999998888775
No 36
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.75 E-value=0.00071 Score=38.00 Aligned_cols=23 Identities=30% Similarity=0.748 Sum_probs=19.5
Q ss_pred cccCCCCCccCCchhHhhhhhhc
Q 045639 148 YECKTCNRTFPSFQALGGHRASH 170 (348)
Q Consensus 148 y~C~~Cgk~F~s~~~L~~H~~~H 170 (348)
|.|..|++.|.+...|..|++.|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 68999999999999999999876
No 37
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.30 E-value=0.0027 Score=36.02 Aligned_cols=24 Identities=38% Similarity=0.751 Sum_probs=22.0
Q ss_pred cccCCCCCccCCchhHhhhhhhcC
Q 045639 148 YECKTCNRTFPSFQALGGHRASHK 171 (348)
Q Consensus 148 y~C~~Cgk~F~s~~~L~~H~~~H~ 171 (348)
|+|..|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 689999999999999999999774
No 38
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.04 E-value=0.0033 Score=35.93 Aligned_cols=23 Identities=35% Similarity=0.761 Sum_probs=21.2
Q ss_pred eeccccCcccCChhHHHhHhhhc
Q 045639 220 HECSICGAEFTSGQALGGHMRRH 242 (348)
Q Consensus 220 ~~C~~Cgk~F~~~~~L~~H~r~H 242 (348)
|.|.+|++.|.+...|..|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 68999999999999999999864
No 39
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=95.95 E-value=0.0069 Score=58.83 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=90.7
Q ss_pred CCccccCcccccccccccccCCCCC--cccccC--CCCCccCCchhHhhhhhhcCCCccccC----CCccCCChHHHH--
Q 045639 121 SGMKFNSRRFLEAPGTGTGTGKGGC--YVYECK--TCNRTFPSFQALGGHRASHKKPKAMLM----NDDRLSLKSQHQ-- 190 (348)
Q Consensus 121 c~~~f~~~~~l~~~~~~h~~~h~g~--kpy~C~--~Cgk~F~s~~~L~~H~~~H~~~k~~~c----C~~~f~~~~~L~-- 190 (348)
|...|.....|..|.+. ..|+++ +++.|. .|++.|.....|..|...|.+..++.+ |...+.....-.
T Consensus 295 ~~~~~s~~~~l~~~~~~--~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (467)
T COG5048 295 CNISFSRSSPLTRHLRS--VNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPP 372 (467)
T ss_pred ccCCccccccccccccc--cccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCccccccccCCCCc
Confidence 66888888888544332 279999 999999 799999999999999999998887666 444433332211
Q ss_pred --hhhc-------ccccC------CCCCchhhccccccCCCCC--ceeccccCcccCChhHHHhHhhhcCCCCCCccccc
Q 045639 191 --QQQQ-------QQFLV------SKSDDEEEDGNFRNGNSSK--VHECSICGAEFTSGQALGGHMRRHRSAPVAATAAA 253 (348)
Q Consensus 191 --~H~~-------~~~C~------~f~~~~~L~~H~~~H~~ek--p~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~ 253 (348)
.... .+.+. .+.....+..|...|...+ .+.|..|++.|.....|..|++.|....+.-+...
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (467)
T COG5048 373 QSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSIL 452 (467)
T ss_pred cchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCceeeccc
Confidence 0000 22221 4444555666766676665 46677899999999999999999887665544433
No 40
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=95.34 E-value=0.015 Score=39.13 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=23.1
Q ss_pred CCcccccCCCCCccCCchhHhhhhhhcCCCcc
Q 045639 144 GCYVYECKTCNRTFPSFQALGGHRASHKKPKA 175 (348)
Q Consensus 144 g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~ 175 (348)
.+.|..|++|+..+.+..+|.+|+.++.+.||
T Consensus 21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 46799999999999999999999988776664
No 41
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.14 E-value=0.01 Score=34.72 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=20.6
Q ss_pred eeccccCcccCChhHHHhHhhh
Q 045639 220 HECSICGAEFTSGQALGGHMRR 241 (348)
Q Consensus 220 ~~C~~Cgk~F~~~~~L~~H~r~ 241 (348)
|-|.+|++.|.+...|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 7899999999999999999975
No 42
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.07 E-value=0.0098 Score=33.94 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=21.0
Q ss_pred cccCCCCCccCCchhHhhhhhhc
Q 045639 148 YECKTCNRTFPSFQALGGHRASH 170 (348)
Q Consensus 148 y~C~~Cgk~F~s~~~L~~H~~~H 170 (348)
|.|.+|++.|.+...|..|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 67999999999999999998865
No 43
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=94.53 E-value=0.017 Score=32.61 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=18.7
Q ss_pred eeccccCcccCChhHHHhHhhhcC
Q 045639 220 HECSICGAEFTSGQALGGHMRRHR 243 (348)
Q Consensus 220 ~~C~~Cgk~F~~~~~L~~H~r~H~ 243 (348)
|+|..|+.... ...|..|+++|.
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 78999999888 889999999864
No 44
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=94.44 E-value=0.027 Score=61.30 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=67.9
Q ss_pred CCCCCCccccCcccccccccccccCCCCCcccccCCCCCccCCchhHhhhhhh-cCCCccccCCCccCCChHHHHhhhcc
Q 045639 117 NVNNSGMKFNSRRFLEAPGTGTGTGKGGCYVYECKTCNRTFPSFQALGGHRAS-HKKPKAMLMNDDRLSLKSQHQQQQQQ 195 (348)
Q Consensus 117 ~~~~c~~~f~~~~~l~~~~~~h~~~h~g~kpy~C~~Cgk~F~s~~~L~~H~~~-H~~~k~~~cC~~~f~~~~~L~~H~~~ 195 (348)
++..|+..|.+.+.+..++. ..|+-.|.|+|..|+..|...+.|..|+|+ |....--.| ... +.|.
T Consensus 438 e~~~~e~~~~s~r~~~~~t~---~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c-~~g-------q~~~-- 504 (1406)
T KOG1146|consen 438 ELTKAEPLLESKRSLEGQTV---VLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYC-KAG-------QNHP-- 504 (1406)
T ss_pred cccchhhhhhhhccccccee---eeecccccccCCccchhhhhHHHhhhcccccccccchhHh-Hhc-------cccc--
Confidence 35667778888888766543 345667999999999999999999999997 432211111 100 0000
Q ss_pred cccCCCCCchhhccccccCCCCCceeccccCcccCChhHHHhHhh
Q 045639 196 QFLVSKSDDEEEDGNFRNGNSSKVHECSICGAEFTSGQALGGHMR 240 (348)
Q Consensus 196 ~~C~~f~~~~~L~~H~~~H~~ekp~~C~~Cgk~F~~~~~L~~H~r 240 (348)
.+.+-...-.+.++|.|..|..+|+...+|..||.
T Consensus 505 ----------~~arg~~~~~~~~p~~C~~C~~stttng~Lsihlq 539 (1406)
T KOG1146|consen 505 ----------RLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQ 539 (1406)
T ss_pred ----------cccccccccCCCCcccceeeeeeeecchHHHHHHH
Confidence 01111112235689999999999999999999986
No 45
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=94.30 E-value=0.023 Score=33.15 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=20.3
Q ss_pred cccCCCCCccCCchhHhhhhhh
Q 045639 148 YECKTCNRTFPSFQALGGHRAS 169 (348)
Q Consensus 148 y~C~~Cgk~F~s~~~L~~H~~~ 169 (348)
|-|..|++.|.+...|..|+++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 7899999999999999999876
No 46
>PRK04860 hypothetical protein; Provisional
Probab=94.12 E-value=0.026 Score=48.18 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=31.7
Q ss_pred cccccCCCCCccCCchhHhhhhhhcCCCccccC--CCccCCCh
Q 045639 146 YVYECKTCNRTFPSFQALGGHRASHKKPKAMLM--NDDRLSLK 186 (348)
Q Consensus 146 kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c--C~~~f~~~ 186 (348)
.+|.|. |++ ....+.+|.++|+++++|.| |+..|...
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~ 156 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK 156 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence 689998 998 67788999999999999999 88876643
No 47
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=92.97 E-value=0.15 Score=55.80 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=78.7
Q ss_pred CCCccccCccccccccc--ccccCCCCCcccccCCCCCccCCchhHhhhhhhcCCCccccC--CCccCCChHHHHhhhcc
Q 045639 120 NSGMKFNSRRFLEAPGT--GTGTGKGGCYVYECKTCNRTFPSFQALGGHRASHKKPKAMLM--NDDRLSLKSQHQQQQQQ 195 (348)
Q Consensus 120 ~c~~~f~~~~~l~~~~~--~h~~~h~g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c--C~~~f~~~~~L~~H~~~ 195 (348)
.|...|..-....++.+ .+.....|| |.|..|.+.|...-.+. |+-+ ...|.| |...|.....|..|.+
T Consensus 1233 ~~e~~f~~~~~~~~~a~~~~~~~~~sGe--~~c~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~~~~~~~~~l~~~~~- 1305 (1406)
T KOG1146|consen 1233 ALEQPFPQEPEPTATAPPKPPELPASGE--GECGAVDELLTPSFGIS-TLDV---THRYLCRQCKMAFDGEAPLTAHQR- 1305 (1406)
T ss_pred hhhcCccCcccccccCCCCCCcCcCCCc--chhhhccccccCcccee-eccc---chhHHHHHHHhhhcchhHHHHHHH-
Confidence 34455555444433332 222223333 68999999887766555 4432 235667 8888999888888874
Q ss_pred cccCCCCCchhhccccccCCCCCceeccccCcccCChhHHHhHhhhc
Q 045639 196 QFLVSKSDDEEEDGNFRNGNSSKVHECSICGAEFTSGQALGGHMRRH 242 (348)
Q Consensus 196 ~~C~~f~~~~~L~~H~~~H~~ekp~~C~~Cgk~F~~~~~L~~H~r~H 242 (348)
-.|+.+.....+.-|+..+...++| |.+|...|....+|..|||.-
T Consensus 1306 k~~~~~~~~~~~~~~~l~~~d~~~~-c~~c~~~~~~~~alqihm~~~ 1351 (1406)
T KOG1146|consen 1306 KFCFAGRGSGGSMPPPLRVPDCTYH-CLACEVLLSGREALQIHMRSS 1351 (1406)
T ss_pred HHHhccCccccCCCCcccCcccccc-chHHHhhcchhHHHHHHHHHh
Confidence 2344556555566777778888899 999999999999999999963
No 48
>PRK04860 hypothetical protein; Provisional
Probab=92.67 E-value=0.066 Score=45.72 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=29.6
Q ss_pred CceeccccCcccCChhHHHhHhhhcCCCCCCcccccccccC
Q 045639 218 KVHECSICGAEFTSGQALGGHMRRHRSAPVAATAAAMATTN 258 (348)
Q Consensus 218 kp~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~ 258 (348)
-+|.|. |++ ....+.+|+++|+++++|.|..|+..+.
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~ 154 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLV 154 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeE
Confidence 368897 887 6677888999999998899988876543
No 49
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=92.20 E-value=0.096 Score=30.09 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=17.6
Q ss_pred eeccccCcccCChhHHHhHhhh
Q 045639 220 HECSICGAEFTSGQALGGHMRR 241 (348)
Q Consensus 220 ~~C~~Cgk~F~~~~~L~~H~r~ 241 (348)
..|.+||+.| ....|..|+++
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 4799999999 66789999764
No 50
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=91.99 E-value=0.058 Score=48.18 Aligned_cols=49 Identities=27% Similarity=0.408 Sum_probs=36.5
Q ss_pred ccccC-CCccCCChHHHHhhhcccccCCCCCchhhccccccCCCCCceeccccCcccCChhHHHhH-hhhcCC
Q 045639 174 KAMLM-NDDRLSLKSQHQQQQQQQFLVSKSDDEEEDGNFRNGNSSKVHECSICGAEFTSGQALGGH-MRRHRS 244 (348)
Q Consensus 174 k~~~c-C~~~f~~~~~L~~H~~~~~C~~f~~~~~L~~H~~~H~~ekp~~C~~Cgk~F~~~~~L~~H-~r~H~~ 244 (348)
|++-+ |.+.|.....|.+|++ .|-|+|.||.|..-++--|..| |.+|..
T Consensus 10 kpwcwycnrefddekiliqhqk----------------------akhfkchichkkl~sgpglsihcmqvhke 60 (341)
T KOG2893|consen 10 KPWCWYCNREFDDEKILIQHQK----------------------AKHFKCHICHKKLFSGPGLSIHCMQVHKE 60 (341)
T ss_pred Cceeeecccccchhhhhhhhhh----------------------hccceeeeehhhhccCCCceeehhhhhhh
Confidence 44433 8888887777666653 4669999999988888899998 777753
No 51
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=91.51 E-value=0.078 Score=29.85 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=18.0
Q ss_pred cccCCCCCccCCchhHhhhhhhcC
Q 045639 148 YECKTCNRTFPSFQALGGHRASHK 171 (348)
Q Consensus 148 y~C~~Cgk~F~s~~~L~~H~~~H~ 171 (348)
|+|..|+.... ...|..|++.|.
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 78999998887 889999998753
No 52
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=91.24 E-value=0.16 Score=31.30 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=20.6
Q ss_pred ceeccccCcccCChhHHHhHhhh
Q 045639 219 VHECSICGAEFTSGQALGGHMRR 241 (348)
Q Consensus 219 p~~C~~Cgk~F~~~~~L~~H~r~ 241 (348)
+|.|.+|++.|.....|..|++.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 58899999999999999999863
No 53
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=90.31 E-value=0.19 Score=28.88 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=17.2
Q ss_pred cccCCCCCccCCchhHhhhhhh
Q 045639 148 YECKTCNRTFPSFQALGGHRAS 169 (348)
Q Consensus 148 y~C~~Cgk~F~s~~~L~~H~~~ 169 (348)
..|..||+.| ....|..|+.+
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 4799999999 67788888753
No 54
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=89.67 E-value=0.26 Score=47.71 Aligned_cols=55 Identities=27% Similarity=0.370 Sum_probs=46.3
Q ss_pred CCCCchhhccccc--cCCCC--Cceecc--ccCcccCChhHHHhHhhhcCCCCCCcccccc
Q 045639 200 SKSDDEEEDGNFR--NGNSS--KVHECS--ICGAEFTSGQALGGHMRRHRSAPVAATAAAM 254 (348)
Q Consensus 200 ~f~~~~~L~~H~~--~H~~e--kp~~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~ 254 (348)
.|.....|..|.+ .|+++ ++|.|. .|++.|.+...|..|..+|++..+..+....
T Consensus 298 ~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (467)
T COG5048 298 SFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLN 358 (467)
T ss_pred CccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccccccc
Confidence 4555556888888 89999 999999 7999999999999999999998876665443
No 55
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=89.02 E-value=0.4 Score=32.91 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=27.5
Q ss_pred ceeccccCcccCChhHHHhHhh-hcCCC-CCCccccccc
Q 045639 219 VHECSICGAEFTSGQALGGHMR-RHRSA-PVAATAAAMA 255 (348)
Q Consensus 219 p~~C~~Cgk~F~~~~~L~~H~r-~H~~~-~~~~~~~~~~ 255 (348)
.|.|++||+.| +...|..|.. .|..+ +.+.|+.|..
T Consensus 2 ~f~CP~C~~~~-~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGF-SESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCcc-CHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 48999999955 4678999965 56654 5688999865
No 56
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=88.74 E-value=0.23 Score=37.97 Aligned_cols=24 Identities=42% Similarity=0.721 Sum_probs=19.0
Q ss_pred ccccCCCCCccCCchhHhhhhhhc
Q 045639 147 VYECKTCNRTFPSFQALGGHRASH 170 (348)
Q Consensus 147 py~C~~Cgk~F~s~~~L~~H~~~H 170 (348)
.+.|..|++.|.+...|..|++.+
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHT
T ss_pred CCCCCccCCCCcCHHHHHHHHcCc
Confidence 578888888888888888888864
No 57
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=87.40 E-value=0.35 Score=29.69 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.5
Q ss_pred ccccCCCCCccCCchhHhhhhhh
Q 045639 147 VYECKTCNRTFPSFQALGGHRAS 169 (348)
Q Consensus 147 py~C~~Cgk~F~s~~~L~~H~~~ 169 (348)
+|.|..|++.|.....+..|+..
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 58899999999999999999864
No 58
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.14 E-value=0.57 Score=48.44 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCccCCChHHHHhhhc--ccc---cC-------CCCCchhhccccccCCCCCceecc
Q 045639 179 NDDRLSLKSQHQQQQQ--QQF---LV-------SKSDDEEEDGNFRNGNSSKVHECS 223 (348)
Q Consensus 179 C~~~f~~~~~L~~H~~--~~~---C~-------~f~~~~~L~~H~~~H~~ekp~~C~ 223 (348)
|...|-....|..|++ -|. |. -|.....|..|.|.+. |.|.
T Consensus 188 C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE 240 (669)
T KOG2231|consen 188 CHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCE 240 (669)
T ss_pred hhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcC----cccc
Confidence 6666666666666665 222 21 3444555666655433 6665
No 59
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=83.61 E-value=3 Score=39.58 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=19.7
Q ss_pred cccccCCCCCccCCchhHhhhhhh-cC
Q 045639 146 YVYECKTCNRTFPSFQALGGHRAS-HK 171 (348)
Q Consensus 146 kpy~C~~Cgk~F~s~~~L~~H~~~-H~ 171 (348)
..|.|++|++.=.+...|..|... |.
T Consensus 78 qSftCPyC~~~Gfte~~f~~Hv~s~Hp 104 (381)
T KOG1280|consen 78 QSFTCPYCGIMGFTERQFGTHVLSQHP 104 (381)
T ss_pred ccccCCcccccccchhHHHHHhhhcCc
Confidence 458899999887777788888764 53
No 60
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=75.15 E-value=1.2 Score=30.58 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=25.6
Q ss_pred CCCCCcccccCCCCCccCCchhHhhhhhh
Q 045639 141 GKGGCYVYECKTCNRTFPSFQALGGHRAS 169 (348)
Q Consensus 141 ~h~g~kpy~C~~Cgk~F~s~~~L~~H~~~ 169 (348)
...||..+.|+-||+.|.......+|...
T Consensus 11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNK 39 (65)
T COG4049 11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNK 39 (65)
T ss_pred ccCCceeeeCCchhHHHHHhHHHHHHhhH
Confidence 45788999999999999999999999764
No 61
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=74.72 E-value=3.3 Score=42.10 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.8
Q ss_pred CcccccCCCCCccCCchhHhhhhhhcC
Q 045639 145 CYVYECKTCNRTFPSFQALGGHRASHK 171 (348)
Q Consensus 145 ~kpy~C~~Cgk~F~s~~~L~~H~~~H~ 171 (348)
.++.+|..||+.|........|+..|.
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H~ 442 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIHD 442 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhhh
Confidence 467899999999999988888877763
No 62
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=73.87 E-value=2.4 Score=40.23 Aligned_cols=26 Identities=23% Similarity=0.531 Sum_probs=17.9
Q ss_pred cccCC--CCCccCCchhHhhhhhhcCCC
Q 045639 148 YECKT--CNRTFPSFQALGGHRASHKKP 173 (348)
Q Consensus 148 y~C~~--Cgk~F~s~~~L~~H~~~H~~~ 173 (348)
|.|+. |.........|+.|.++-.+.
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H~~ 179 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQHGF 179 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhcCc
Confidence 77875 666666677888888774443
No 63
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=73.74 E-value=2.4 Score=27.56 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=16.9
Q ss_pred CCCceeccccCcccCCh----hHHHhHhh
Q 045639 216 SSKVHECSICGAEFTSG----QALGGHMR 240 (348)
Q Consensus 216 ~ekp~~C~~Cgk~F~~~----~~L~~H~r 240 (348)
+....+|.+|++.|... ..|..|++
T Consensus 13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp CSS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred CcCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 45678999999999875 78999984
No 64
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=70.15 E-value=3.1 Score=27.94 Aligned_cols=25 Identities=28% Similarity=0.735 Sum_probs=20.1
Q ss_pred ceeccccCcccCCh-----hHHHhHhh-hcC
Q 045639 219 VHECSICGAEFTSG-----QALGGHMR-RHR 243 (348)
Q Consensus 219 p~~C~~Cgk~F~~~-----~~L~~H~r-~H~ 243 (348)
--.|..|++.+... +.|.+|++ +|.
T Consensus 18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~ 48 (50)
T smart00614 18 RAKCKYCGKKLSRSSKGGTSNLRRHLRRKHP 48 (50)
T ss_pred EEEecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence 46799999999776 58999988 564
No 65
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.13 E-value=3.9 Score=42.55 Aligned_cols=19 Identities=37% Similarity=0.719 Sum_probs=12.0
Q ss_pred ccCCCCCccCCchhHhhhhh
Q 045639 149 ECKTCNRTFPSFQALGGHRA 168 (348)
Q Consensus 149 ~C~~Cgk~F~s~~~L~~H~~ 168 (348)
.|..| -.|.+...|+.|++
T Consensus 117 ~~~~c-~~~~s~~~Lk~H~~ 135 (669)
T KOG2231|consen 117 ECLHC-TEFKSVENLKNHMR 135 (669)
T ss_pred CCccc-cchhHHHHHHHHHH
Confidence 46666 55666666777763
No 66
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=63.74 E-value=2.7 Score=28.91 Aligned_cols=31 Identities=19% Similarity=0.481 Sum_probs=26.2
Q ss_pred ccCCCCCceeccccCcccCChhHHHhHhhhc
Q 045639 212 RNGNSSKVHECSICGAEFTSGQALGGHMRRH 242 (348)
Q Consensus 212 ~~H~~ekp~~C~~Cgk~F~~~~~L~~H~r~H 242 (348)
+.-.||--+.|+-||+.|.....+.+|...-
T Consensus 10 ~~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKa 40 (65)
T COG4049 10 RDRDGEEFLRCPRCGMVFRRRKDYIRHVNKA 40 (65)
T ss_pred eccCCceeeeCCchhHHHHHhHHHHHHhhHH
Confidence 3456788899999999999999999997653
No 67
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=62.13 E-value=4.6 Score=36.16 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=17.5
Q ss_pred CcccccCCCCCccCCchhHhhhhh
Q 045639 145 CYVYECKTCNRTFPSFQALGGHRA 168 (348)
Q Consensus 145 ~kpy~C~~Cgk~F~s~~~L~~H~~ 168 (348)
++.+.|++|++.|....-+.+..+
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r 26 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIR 26 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCce
Confidence 356789999999988765555443
No 68
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=58.59 E-value=4.1 Score=33.56 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=17.8
Q ss_pred CCceeccccCcccCChhHHHhHhhhcCCCCC
Q 045639 217 SKVHECSICGAEFTSGQALGGHMRRHRSAPV 247 (348)
Q Consensus 217 ekp~~C~~Cgk~F~~~~~L~~H~r~H~~~~~ 247 (348)
+.--.|-+|||.|.. |++|++.|+|..+
T Consensus 70 ~d~i~clecGk~~k~---LkrHL~~~~gltp 97 (132)
T PF05443_consen 70 PDYIICLECGKKFKT---LKRHLRTHHGLTP 97 (132)
T ss_dssp SS-EE-TBT--EESB---HHHHHHHTT-S-H
T ss_pred cCeeEEccCCcccch---HHHHHHHccCCCH
Confidence 344679999999976 5999999988763
No 69
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=58.44 E-value=6.8 Score=23.88 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=7.6
Q ss_pred eeccccCcccCC
Q 045639 220 HECSICGAEFTS 231 (348)
Q Consensus 220 ~~C~~Cgk~F~~ 231 (348)
|.|.+||..+..
T Consensus 2 ~~C~~CGy~y~~ 13 (33)
T cd00350 2 YVCPVCGYIYDG 13 (33)
T ss_pred EECCCCCCEECC
Confidence 667777765543
No 70
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=57.65 E-value=9.7 Score=36.19 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.9
Q ss_pred eeccccCcccCChhHHHhHhhh
Q 045639 220 HECSICGAEFTSGQALGGHMRR 241 (348)
Q Consensus 220 ~~C~~Cgk~F~~~~~L~~H~r~ 241 (348)
-+|-.|....-....|..||++
T Consensus 280 v~CLfC~~~~en~~~l~eHmk~ 301 (423)
T KOG2482|consen 280 VVCLFCTNFYENPVFLFEHMKI 301 (423)
T ss_pred eEEEeeccchhhHHHHHHHHHH
Confidence 5899999999999999999985
No 71
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=56.90 E-value=2.1 Score=44.45 Aligned_cols=26 Identities=31% Similarity=0.671 Sum_probs=24.0
Q ss_pred ceeccccCcccCChhHHHhHhhhcCC
Q 045639 219 VHECSICGAEFTSGQALGGHMRRHRS 244 (348)
Q Consensus 219 p~~C~~Cgk~F~~~~~L~~H~r~H~~ 244 (348)
-|-|.+|||.|-.-..+..||++|.-
T Consensus 792 iFpCreC~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 792 IFPCRECGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred eeehHHHHHHHHHHhhhhHHHHHHHH
Confidence 48999999999999999999999973
No 72
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=55.84 E-value=6 Score=32.60 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=16.4
Q ss_pred cccccCCCCCccCCchhHhhhhhhcCCCc
Q 045639 146 YVYECKTCNRTFPSFQALGGHRASHKKPK 174 (348)
Q Consensus 146 kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k 174 (348)
.--.|-+|||.|.. |++|++.|.|--
T Consensus 71 d~i~clecGk~~k~---LkrHL~~~~glt 96 (132)
T PF05443_consen 71 DYIICLECGKKFKT---LKRHLRTHHGLT 96 (132)
T ss_dssp S-EE-TBT--EESB---HHHHHHHTT-S-
T ss_pred CeeEEccCCcccch---HHHHHHHccCCC
Confidence 34679999999875 699999997643
No 73
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.72 E-value=5.4 Score=40.95 Aligned_cols=21 Identities=52% Similarity=0.441 Sum_probs=10.6
Q ss_pred hhHHHHhhhchhccccccccc
Q 045639 317 QQQQQQQQQQPQQQQKSSLVF 337 (348)
Q Consensus 317 qqQqQQqQQqqqqqQq~~l~~ 337 (348)
|||||||||++-++.+++.+.
T Consensus 74 ~~~~~~~~~~~~~P~~~~~~~ 94 (1179)
T KOG3648|consen 74 QQQQQQQQQQQLQPPQPPFPA 94 (1179)
T ss_pred HHHHHHHHHHhhCCCCCCccc
Confidence 333444444455666666553
No 74
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=51.97 E-value=6.8 Score=32.16 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.0
Q ss_pred eeccccCcccCChhHHHhHhhhcCCCCC
Q 045639 220 HECSICGAEFTSGQALGGHMRRHRSAPV 247 (348)
Q Consensus 220 ~~C~~Cgk~F~~~~~L~~H~r~H~~~~~ 247 (348)
..|-+|||.|.+ |++|+++|.|..|
T Consensus 77 IicLEDGkkfKS---LKRHL~t~~gmTP 101 (148)
T COG4957 77 IICLEDGKKFKS---LKRHLTTHYGLTP 101 (148)
T ss_pred EEEeccCcchHH---HHHHHhcccCCCH
Confidence 569999999964 8999999988653
No 75
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=51.63 E-value=9.8 Score=23.44 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=16.2
Q ss_pred ceeccccCcccCChhHHHhHhhhcCCCCCCcccccccc
Q 045639 219 VHECSICGAEFTSGQALGGHMRRHRSAPVAATAAAMAT 256 (348)
Q Consensus 219 p~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~ 256 (348)
.|.|.+||..+... +.|..|+.|++.
T Consensus 2 ~~~C~~CG~i~~g~------------~~p~~CP~Cg~~ 27 (34)
T cd00729 2 VWVCPVCGYIHEGE------------EAPEKCPICGAP 27 (34)
T ss_pred eEECCCCCCEeECC------------cCCCcCcCCCCc
Confidence 47888888665432 145677777653
No 76
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=48.43 E-value=13 Score=29.54 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=8.6
Q ss_pred cccccCCCCCccCCc
Q 045639 146 YVYECKTCNRTFPSF 160 (348)
Q Consensus 146 kpy~C~~Cgk~F~s~ 160 (348)
.|-.|+.||..|.-.
T Consensus 25 ~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 25 DPIVCPKCGTEFPPE 39 (108)
T ss_pred CCccCCCCCCccCcc
Confidence 355566666666543
No 77
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=47.54 E-value=14 Score=21.27 Aligned_cols=20 Identities=20% Similarity=0.589 Sum_probs=15.4
Q ss_pred eeccccCcccCChhHHHhHhh
Q 045639 220 HECSICGAEFTSGQALGGHMR 240 (348)
Q Consensus 220 ~~C~~Cgk~F~~~~~L~~H~r 240 (348)
..|++|++.+ ....+..|..
T Consensus 2 v~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLD 21 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHH
Confidence 3699999999 5567777864
No 78
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=47.31 E-value=13 Score=31.83 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=20.2
Q ss_pred CceeccccCcccCChhHHHhHhhhcCCCCCCcccccccc
Q 045639 218 KVHECSICGAEFTSGQALGGHMRRHRSAPVAATAAAMAT 256 (348)
Q Consensus 218 kp~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~ 256 (348)
+.|.|.+||.. |.|+.|-.|++|++.
T Consensus 133 ~~~vC~vCGy~-------------~~ge~P~~CPiCga~ 158 (166)
T COG1592 133 KVWVCPVCGYT-------------HEGEAPEVCPICGAP 158 (166)
T ss_pred CEEEcCCCCCc-------------ccCCCCCcCCCCCCh
Confidence 37999999863 557788899999754
No 79
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.56 E-value=44 Score=26.73 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.2
Q ss_pred CCceeccccCcccCChhHHHhHhhhcC
Q 045639 217 SKVHECSICGAEFTSGQALGGHMRRHR 243 (348)
Q Consensus 217 ekp~~C~~Cgk~F~~~~~L~~H~r~H~ 243 (348)
...|+|..|...|--.-+.-.|...|.
T Consensus 79 ~~~y~C~~C~~~FC~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 79 SHRYVCAVCKNVFCVDCDVFVHESLHC 105 (112)
T ss_pred ccceeCCCCCCccccccchhhhhhccC
Confidence 447999999999999888888987775
No 80
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=45.38 E-value=16 Score=33.53 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=12.9
Q ss_pred cCCchhhHHHHHhHHHhhcc
Q 045639 67 FDSTEEDEDMANCLILLAQC 86 (348)
Q Consensus 67 ~~~~~Eee~~a~cli~la~~ 86 (348)
.+.++.-|-.|.|.+|.+..
T Consensus 152 lCEDDQFEHQAsCQvLe~E~ 171 (314)
T PF06524_consen 152 LCEDDQFEHQASCQVLESET 171 (314)
T ss_pred eeccchhhhhhhhhhhhccc
Confidence 45566666777777776554
No 81
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=44.88 E-value=14 Score=29.01 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=23.0
Q ss_pred eec----cccCcccCChhHHHhHhhhcCC
Q 045639 220 HEC----SICGAEFTSGQALGGHMRRHRS 244 (348)
Q Consensus 220 ~~C----~~Cgk~F~~~~~L~~H~r~H~~ 244 (348)
|.| ..|+..+.+...+..|++.++|
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 899 9999999999999999998764
No 82
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=44.25 E-value=4 Score=42.42 Aligned_cols=26 Identities=19% Similarity=0.668 Sum_probs=23.7
Q ss_pred cccccCCCCCccCCchhHhhhhhhcC
Q 045639 146 YVYECKTCNRTFPSFQALGGHRASHK 171 (348)
Q Consensus 146 kpy~C~~Cgk~F~s~~~L~~H~~~H~ 171 (348)
-.|.|.+|+|+|.....+..||++|.
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHHH
Confidence 45999999999999999999999984
No 83
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=44.23 E-value=8.1 Score=35.19 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=15.7
Q ss_pred CceeccccCcccCChhHHHhHhhhcC
Q 045639 218 KVHECSICGAEFTSGQALGGHMRRHR 243 (348)
Q Consensus 218 kp~~C~~Cgk~F~~~~~L~~H~r~H~ 243 (348)
.-|.|-.||+.|.+ -.+..|...-+
T Consensus 28 ~~fSCIDC~k~F~~-~sYknH~kCIT 52 (276)
T KOG2186|consen 28 AYFSCIDCGKTFER-VSYKNHTKCIT 52 (276)
T ss_pred CeeEEeeccccccc-chhhhhhhhcc
Confidence 44677777777766 55666665544
No 84
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=43.65 E-value=9.9 Score=42.31 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.3
Q ss_pred CCCCCc
Q 045639 311 LPFSSK 316 (348)
Q Consensus 311 ~~~~~~ 316 (348)
++|..+
T Consensus 319 ~P~~~~ 324 (1973)
T KOG4407|consen 319 QPFYPQ 324 (1973)
T ss_pred ccCchh
Confidence 344333
No 85
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=43.44 E-value=12 Score=40.97 Aligned_cols=10 Identities=20% Similarity=0.089 Sum_probs=4.7
Q ss_pred cccCCCcccc
Q 045639 336 VFTAAAALVD 345 (348)
Q Consensus 336 ~~s~~~~lvd 345 (348)
|-+..+++.|
T Consensus 1462 vQt~s~p~p~ 1471 (1517)
T KOG1883|consen 1462 VQTMSPPYPG 1471 (1517)
T ss_pred eeecCCCCCc
Confidence 4333355554
No 86
>PF11787 Aft1_HRR: Aft1 HRR domain; InterPro: IPR021756 This domain is found in the transcription factor Aft1 which is required for a wide range of stress responses. The HRR domain is involved in meiotic recombination. It has been shown to be necessary and sufficient to repress recombination [].
Probab=42.74 E-value=15 Score=27.11 Aligned_cols=18 Identities=44% Similarity=0.558 Sum_probs=14.4
Q ss_pred chhh-HHHHHhHHHhhccC
Q 045639 70 TEED-EDMANCLILLAQCQ 87 (348)
Q Consensus 70 ~~Ee-e~~a~cli~la~~~ 87 (348)
+.-| -|.||-|+|||+|+
T Consensus 58 ~~HDa~dAANgLfmLAqg~ 76 (76)
T PF11787_consen 58 DPHDANDAANGLFMLAQGR 76 (76)
T ss_pred CcccHHHHHHHHHHHhcCC
Confidence 3345 78999999999984
No 87
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=41.19 E-value=6.7 Score=35.34 Aligned_cols=42 Identities=19% Similarity=0.372 Sum_probs=26.8
Q ss_pred CCccccCcccccccccccccCCCCCcccccCCCCCccCCchhHhhh-hhhc
Q 045639 121 SGMKFNSRRFLEAPGTGTGTGKGGCYVYECKTCNRTFPSFQALGGH-RASH 170 (348)
Q Consensus 121 c~~~f~~~~~l~~~~~~h~~~h~g~kpy~C~~Cgk~F~s~~~L~~H-~~~H 170 (348)
|.+.|-..+-|-. | -..|-|+|.+|.|...+--.|..| +.+|
T Consensus 16 cnrefddekiliq----h----qkakhfkchichkkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 16 CNREFDDEKILIQ----H----QKAKHFKCHICHKKLFSGPGLSIHCMQVH 58 (341)
T ss_pred cccccchhhhhhh----h----hhhccceeeeehhhhccCCCceeehhhhh
Confidence 3366666666622 2 234678888888887777777777 3345
No 88
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=40.41 E-value=12 Score=30.66 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=20.1
Q ss_pred ccccCCCCCccCCchhHhhhhhhcCCCc
Q 045639 147 VYECKTCNRTFPSFQALGGHRASHKKPK 174 (348)
Q Consensus 147 py~C~~Cgk~F~s~~~L~~H~~~H~~~k 174 (348)
-..|-+|||.|.+ |++|+.+|.|--
T Consensus 76 ~IicLEDGkkfKS---LKRHL~t~~gmT 100 (148)
T COG4957 76 YIICLEDGKKFKS---LKRHLTTHYGLT 100 (148)
T ss_pred eEEEeccCcchHH---HHHHHhcccCCC
Confidence 3579999999864 999999987643
No 89
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=40.21 E-value=21 Score=30.16 Aligned_cols=18 Identities=33% Similarity=0.672 Sum_probs=12.8
Q ss_pred CCCCcccccCCCCCccCC
Q 045639 142 KGGCYVYECKTCNRTFPS 159 (348)
Q Consensus 142 h~g~kpy~C~~Cgk~F~s 159 (348)
|...-..+|..|+|-|..
T Consensus 9 ~~p~~vv~C~~c~kWFCN 26 (152)
T PF09416_consen 9 HDPSCVVKCNTCNKWFCN 26 (152)
T ss_dssp --CCCEEEETTTTEEEES
T ss_pred CCcccEeEcCCCCcEeec
Confidence 445567899999999854
No 90
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=39.52 E-value=22 Score=37.78 Aligned_cols=43 Identities=23% Similarity=0.563 Sum_probs=0.0
Q ss_pred CCCCCccccCcccccccccccccCCCCCcccccCCCCCccCCchhHhhhhhhcCCCccccC--CCccCCChHHHHhhhcc
Q 045639 118 VNNSGMKFNSRRFLEAPGTGTGTGKGGCYVYECKTCNRTFPSFQALGGHRASHKKPKAMLM--NDDRLSLKSQHQQQQQQ 195 (348)
Q Consensus 118 ~~~c~~~f~~~~~l~~~~~~h~~~h~g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c--C~~~f~~~~~L~~H~~~ 195 (348)
|..|| ..++|+.|+-. +..|.......| ||..
T Consensus 438 C~~Cg-----------------------~v~~Cp~Cd~~----------lt~H~~~~~L~CH~Cg~~------------- 471 (730)
T COG1198 438 CRDCG-----------------------YIAECPNCDSP----------LTLHKATGQLRCHYCGYQ------------- 471 (730)
T ss_pred cccCC-----------------------CcccCCCCCcc----------eEEecCCCeeEeCCCCCC-------------
Q ss_pred cccCCCCCchhhccccccCCCCCceeccccC
Q 045639 196 QFLVSKSDDEEEDGNFRNGNSSKVHECSICG 226 (348)
Q Consensus 196 ~~C~~f~~~~~L~~H~~~H~~ekp~~C~~Cg 226 (348)
...|..|+.||
T Consensus 472 --------------------~~~p~~Cp~Cg 482 (730)
T COG1198 472 --------------------EPIPQSCPECG 482 (730)
T ss_pred --------------------CCCCCCCCCCC
No 91
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=39.45 E-value=14 Score=30.32 Aligned_cols=15 Identities=40% Similarity=1.034 Sum_probs=13.8
Q ss_pred ceeccccCcccCChh
Q 045639 219 VHECSICGAEFTSGQ 233 (348)
Q Consensus 219 p~~C~~Cgk~F~~~~ 233 (348)
||+|..||+.|..++
T Consensus 1 PH~Ct~Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGS 15 (131)
T ss_pred CcccCcCCCCcCCCc
Confidence 789999999999886
No 92
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=38.82 E-value=16 Score=35.30 Aligned_cols=76 Identities=26% Similarity=0.451 Sum_probs=0.0
Q ss_pred cccCCCCCccCCchhHhhhhhh--cCCCccccCCCccCCChHHHHhhhc--------ccccCCCCCchhhccccccCCCC
Q 045639 148 YECKTCNRTFPSFQALGGHRAS--HKKPKAMLMNDDRLSLKSQHQQQQQ--------QQFLVSKSDDEEEDGNFRNGNSS 217 (348)
Q Consensus 148 y~C~~Cgk~F~s~~~L~~H~~~--H~~~k~~~cC~~~f~~~~~L~~H~~--------~~~C~~f~~~~~L~~H~~~H~~e 217 (348)
|.|..|...|.....-..|.++ | +.+|++-.. -|.-...........- .-.++
T Consensus 4 ftC~tC~v~F~~ad~Qr~HyKSdWH---------------RYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~--~e~~~ 66 (390)
T KOG2785|consen 4 FTCNTCNVEFDDADEQRAHYKSDWH---------------RYNLKRKVASLPPITAEEFNEKVLSDDSEKEEN--LEEAE 66 (390)
T ss_pred ceeeceeeeeccHHHHHHHhhhhHH---------------HhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhh--hhhcc
Q ss_pred CceeccccCcccCChhHHHhHhh
Q 045639 218 KVHECSICGAEFTSGQALGGHMR 240 (348)
Q Consensus 218 kp~~C~~Cgk~F~~~~~L~~H~r 240 (348)
-++.|.+|.|.|....+...|+.
T Consensus 67 ~~~~c~~c~k~~~s~~a~~~hl~ 89 (390)
T KOG2785|consen 67 SVVYCEACNKSFASPKAHENHLK 89 (390)
T ss_pred cceehHHhhccccChhhHHHHHH
No 93
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=36.51 E-value=15 Score=23.08 Aligned_cols=16 Identities=44% Similarity=1.082 Sum_probs=12.4
Q ss_pred cccccCCCCCccCCch
Q 045639 146 YVYECKTCNRTFPSFQ 161 (348)
Q Consensus 146 kpy~C~~Cgk~F~s~~ 161 (348)
+.|+|..||+.|.-..
T Consensus 4 Y~y~C~~Cg~~fe~~~ 19 (41)
T smart00834 4 YEYRCEDCGHTFEVLQ 19 (41)
T ss_pred EEEEcCCCCCEEEEEE
Confidence 5789999999886443
No 94
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=35.26 E-value=20 Score=32.77 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=32.0
Q ss_pred eeccccCcccCChhHHHhHhhhcCCCCCCcccccccccCC
Q 045639 220 HECSICGAEFTSGQALGGHMRRHRSAPVAATAAAMATTNT 259 (348)
Q Consensus 220 ~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~~ 259 (348)
|.|.+||-...-. .|-+||-+.++ ..|.|..|+..|..
T Consensus 4 FtCnvCgEsvKKp-~vekH~srCrn-~~fSCIDC~k~F~~ 41 (276)
T KOG2186|consen 4 FTCNVCGESVKKP-QVEKHMSRCRN-AYFSCIDCGKTFER 41 (276)
T ss_pred Eehhhhhhhcccc-chHHHHHhccC-CeeEEeeccccccc
Confidence 8899999887665 67789988888 67999999998875
No 95
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=34.80 E-value=21 Score=37.81 Aligned_cols=13 Identities=38% Similarity=0.912 Sum_probs=8.7
Q ss_pred cccCCCCCccCCc
Q 045639 148 YECKTCNRTFPSF 160 (348)
Q Consensus 148 y~C~~Cgk~F~s~ 160 (348)
-.|..|++.|...
T Consensus 461 dtC~~C~kkFfSl 473 (1374)
T PTZ00303 461 DSCPSCGRAFISL 473 (1374)
T ss_pred CcccCcCCccccc
Confidence 3577777777654
No 96
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=34.35 E-value=13 Score=21.95 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=14.0
Q ss_pred eeccccCcccCChhHHHhHhhhcC
Q 045639 220 HECSICGAEFTSGQALGGHMRRHR 243 (348)
Q Consensus 220 ~~C~~Cgk~F~~~~~L~~H~r~H~ 243 (348)
|.|-.|++.| .+...+.|...-+
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht~CIt 23 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHTSCIT 23 (28)
T ss_dssp EEETTTTEEE-EGGGTTT-----S
T ss_pred CeeecCCCCc-CcCCcCCCCcccC
Confidence 5788899999 6667777765443
No 97
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=33.67 E-value=10 Score=39.79 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=16.0
Q ss_pred CceeccccCcccCChhHHHhH
Q 045639 218 KVHECSICGAEFTSGQALGGH 238 (348)
Q Consensus 218 kp~~C~~Cgk~F~~~~~L~~H 238 (348)
|--+|+.||..|....-+..|
T Consensus 677 RqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 677 RQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred hcCCCCCCCCCCCcccccccC
Confidence 446799999999887665554
No 98
>PF11179 DUF2967: Protein of unknown function (DUF2967); InterPro: IPR021349 This family of proteins with unknown function appears to be restricted to Drosophila.
Probab=32.09 E-value=20 Score=31.15 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=7.3
Q ss_pred hhHHHHhhhchhccccccc
Q 045639 317 QQQQQQQQQQPQQQQKSSL 335 (348)
Q Consensus 317 qqQqQQqQQqqqqqQq~~l 335 (348)
+.|+|+|+||+++.||..|
T Consensus 155 ~~qkq~q~q~~~~p~q~Ql 173 (258)
T PF11179_consen 155 QNQKQRQSQQQPPPQQQQL 173 (258)
T ss_pred hhhhhhhhhcCCCchhhhc
Confidence 3333333333333344444
No 99
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=31.97 E-value=32 Score=21.38 Aligned_cols=14 Identities=21% Similarity=0.505 Sum_probs=10.2
Q ss_pred CcccccCCCCCccC
Q 045639 145 CYVYECKTCNRTFP 158 (348)
Q Consensus 145 ~kpy~C~~Cgk~F~ 158 (348)
....+|..|+..|.
T Consensus 23 g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 23 GRKVRCSKCGHVFF 36 (36)
T ss_pred CcEEECCCCCCEeC
Confidence 35678888888773
No 100
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=31.88 E-value=22 Score=30.12 Aligned_cols=21 Identities=24% Similarity=0.535 Sum_probs=16.4
Q ss_pred cccccCCCCCccCCchhHhhh
Q 045639 146 YVYECKTCNRTFPSFQALGGH 166 (348)
Q Consensus 146 kpy~C~~Cgk~F~s~~~L~~H 166 (348)
+.|+|+.||++|.....+..-
T Consensus 27 ~~~~c~~c~~~f~~~e~~~~~ 47 (154)
T PRK00464 27 RRRECLACGKRFTTFERVELV 47 (154)
T ss_pred eeeeccccCCcceEeEeccCc
Confidence 349999999999887766544
No 101
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=31.75 E-value=19 Score=23.19 Aligned_cols=16 Identities=38% Similarity=1.026 Sum_probs=12.6
Q ss_pred cccccCCCCCccCCch
Q 045639 146 YVYECKTCNRTFPSFQ 161 (348)
Q Consensus 146 kpy~C~~Cgk~F~s~~ 161 (348)
+-|.|..||..|-...
T Consensus 4 Yey~C~~Cg~~fe~~~ 19 (42)
T PF09723_consen 4 YEYRCEECGHEFEVLQ 19 (42)
T ss_pred EEEEeCCCCCEEEEEE
Confidence 5799999999886544
No 102
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=31.69 E-value=8 Score=40.48 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=28.9
Q ss_pred cccccCCC------CCCCCccccCcccccccccccccCCCCCcccccCCCCCccCCchhHhhh
Q 045639 110 AQLQINNN------VNNSGMKFNSRRFLEAPGTGTGTGKGGCYVYECKTCNRTFPSFQALGGH 166 (348)
Q Consensus 110 ~~c~~~~~------~~~c~~~f~~~~~l~~~~~~h~~~h~g~kpy~C~~Cgk~F~s~~~L~~H 166 (348)
..|+.|+. ...|++.||..--= ...+-+.-+|+.||.+|....-+..|
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq---------~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQ---------TRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHH---------HHHHHhcCCCCCCCCCCCcccccccC
Confidence 35666664 33588888864211 11122455899999999876655444
No 103
>PRK14873 primosome assembly protein PriA; Provisional
Probab=31.64 E-value=23 Score=37.35 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=8.7
Q ss_pred CceeccccCcc
Q 045639 218 KVHECSICGAE 228 (348)
Q Consensus 218 kp~~C~~Cgk~ 228 (348)
.|+.|+.||..
T Consensus 421 ~p~~Cp~Cgs~ 431 (665)
T PRK14873 421 PDWRCPRCGSD 431 (665)
T ss_pred cCccCCCCcCC
Confidence 47889999865
No 104
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=31.38 E-value=24 Score=20.33 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=8.8
Q ss_pred eeccccCcccC
Q 045639 220 HECSICGAEFT 230 (348)
Q Consensus 220 ~~C~~Cgk~F~ 230 (348)
-.|+.||..|.
T Consensus 15 ~~Cp~CG~~F~ 25 (26)
T PF10571_consen 15 KFCPHCGYDFE 25 (26)
T ss_pred CcCCCCCCCCc
Confidence 46889999885
No 105
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=31.11 E-value=18 Score=38.09 Aligned_cols=12 Identities=83% Similarity=0.792 Sum_probs=4.9
Q ss_pred HHHhhhchhccc
Q 045639 320 QQQQQQQPQQQQ 331 (348)
Q Consensus 320 qQQqQQqqqqqQ 331 (348)
.|||||||||||
T Consensus 640 ~~~~~~~~~~~~ 651 (657)
T PTZ00186 640 EQQQQQQQQQQQ 651 (657)
T ss_pred HHHHHHHHHHhh
Confidence 444444443333
No 106
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.93 E-value=13 Score=32.12 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=26.0
Q ss_pred cCccccccccCCC--------CCCCCccccCcccccccccccccCCCCCcccccCCCCCcc
Q 045639 105 EQEEIAQLQINNN--------VNNSGMKFNSRRFLEAPGTGTGTGKGGCYVYECKTCNRTF 157 (348)
Q Consensus 105 ~~e~~~~c~~~~~--------~~~c~~~f~~~~~l~~~~~~h~~~h~g~kpy~C~~Cgk~F 157 (348)
..+..|+|++|.. ..+||..|+..--- .. -....+|++|+|.-
T Consensus 127 ~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik-~a---------lk~~~~CP~C~kkI 177 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIK-DA---------LKNTNKCPTCRKKI 177 (187)
T ss_pred ccccccCCCceecchhhccccccccchhHHHHHHH-HH---------HHhCCCCCCccccc
Confidence 3455699999774 25677777764321 00 12346788888743
No 107
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.73 E-value=14 Score=32.69 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=35.8
Q ss_pred ccCCCCCccCCchhHhhhhh-hc---------CCCccccC----CCccCCChHHHHhhh
Q 045639 149 ECKTCNRTFPSFQALGGHRA-SH---------KKPKAMLM----NDDRLSLKSQHQQQQ 193 (348)
Q Consensus 149 ~C~~Cgk~F~s~~~L~~H~~-~H---------~~~k~~~c----C~~~f~~~~~L~~H~ 193 (348)
.|.+|.+.|++..-|..|+. .| .|.--|.| |+-.|.....-+.|+
T Consensus 108 sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~ 166 (253)
T KOG4173|consen 108 SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKFKTSRDRKDHM 166 (253)
T ss_pred hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHH
Confidence 79999999999999999975 23 35556788 888888877766665
No 108
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=30.68 E-value=33 Score=21.40 Aligned_cols=16 Identities=25% Similarity=0.665 Sum_probs=12.5
Q ss_pred CCCCceeccccCcccC
Q 045639 215 NSSKVHECSICGAEFT 230 (348)
Q Consensus 215 ~~ekp~~C~~Cgk~F~ 230 (348)
.+.+..+|+.|+..|.
T Consensus 21 ~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 21 AGGRKVRCPKCGHVFR 36 (37)
T ss_pred cCCcEEECCCCCcEee
Confidence 4456789999998874
No 109
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=30.24 E-value=26 Score=27.37 Aligned_cols=17 Identities=35% Similarity=0.866 Sum_probs=14.5
Q ss_pred ceeccccCcccCChhHH
Q 045639 219 VHECSICGAEFTSGQAL 235 (348)
Q Consensus 219 p~~C~~Cgk~F~~~~~L 235 (348)
||.|..||..|..++.+
T Consensus 2 pH~CtrCG~vf~~g~~~ 18 (112)
T COG3364 2 PHQCTRCGEVFDDGSEE 18 (112)
T ss_pred CceecccccccccccHH
Confidence 78999999999997543
No 110
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=30.21 E-value=15 Score=32.94 Aligned_cols=31 Identities=16% Similarity=0.434 Sum_probs=22.9
Q ss_pred CCCceeccccCcccCChhHHHhHhhhcCCCC
Q 045639 216 SSKVHECSICGAEFTSGQALGGHMRRHRSAP 246 (348)
Q Consensus 216 ~ekp~~C~~Cgk~F~~~~~L~~H~r~H~~~~ 246 (348)
.+..|.|.+|+|.|.-..-..+|+..-+.++
T Consensus 74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e~ 104 (214)
T PF04959_consen 74 DEDKWRCPLCGKLFKGPEFVRKHIFNKHPEK 104 (214)
T ss_dssp SSEEEEE-SSS-EESSHHHHHHHHHHH-HHH
T ss_pred cCCEECCCCCCcccCChHHHHHHHhhcCHHH
Confidence 4456999999999999999999987655444
No 111
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=29.65 E-value=32 Score=34.04 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=24.6
Q ss_pred ccCCCCCceeccccC-cccCChhHHHhHhh
Q 045639 212 RNGNSSKVHECSICG-AEFTSGQALGGHMR 240 (348)
Q Consensus 212 ~~H~~ekp~~C~~Cg-k~F~~~~~L~~H~r 240 (348)
+.|.-.+-|.|.||| +++.-+.++.+|-.
T Consensus 394 KLHGL~~ey~CEICGNy~Y~GrkaF~RHF~ 423 (497)
T KOG2636|consen 394 KLHGLDIEYNCEICGNYVYKGRKAFDRHFN 423 (497)
T ss_pred hhcCCCcccceeeccCccccCcHHHHHHhH
Confidence 456667889999999 89999999999954
No 112
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=29.37 E-value=33 Score=31.50 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=22.8
Q ss_pred CCCceeccccCcccCChhHHHhHhhhcC
Q 045639 216 SSKVHECSICGAEFTSGQALGGHMRRHR 243 (348)
Q Consensus 216 ~ekp~~C~~Cgk~F~~~~~L~~H~r~H~ 243 (348)
..+++.|+.||........|..-.|+|.
T Consensus 206 k~k~~PCPKCg~et~eTkdLSmStR~hk 233 (314)
T PF06524_consen 206 KGKPIPCPKCGYETQETKDLSMSTRSHK 233 (314)
T ss_pred cCCCCCCCCCCCcccccccceeeeecch
Confidence 4588999999998888888887777774
No 113
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=29.21 E-value=18 Score=34.53 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=18.3
Q ss_pred CCCCceeccccCcccCChhHHHhH
Q 045639 215 NSSKVHECSICGAEFTSGQALGGH 238 (348)
Q Consensus 215 ~~ekp~~C~~Cgk~F~~~~~L~~H 238 (348)
...|+|+|.||.+++.-...|.-|
T Consensus 394 ~~nk~~r~~i~~~~~k~~~~l~~~ 417 (442)
T KOG4124|consen 394 VENKPYRCEVCSKRYKNLNGLKYH 417 (442)
T ss_pred eccCcccChhhhhhhccCCCCCce
Confidence 346999999999988776655544
No 114
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=29.12 E-value=29 Score=35.52 Aligned_cols=28 Identities=25% Similarity=0.587 Sum_probs=23.3
Q ss_pred CCceeccccCcccCChhHHHhHhhhcCC
Q 045639 217 SKVHECSICGAEFTSGQALGGHMRRHRS 244 (348)
Q Consensus 217 ekp~~C~~Cgk~F~~~~~L~~H~r~H~~ 244 (348)
.+|..|..||.+|........||-.|-.
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H~d 443 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIHDD 443 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhhhh
Confidence 5679999999999998888887777643
No 115
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=29.11 E-value=42 Score=27.40 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=11.9
Q ss_pred cccccCCCCCccCCchh
Q 045639 146 YVYECKTCNRTFPSFQA 162 (348)
Q Consensus 146 kpy~C~~Cgk~F~s~~~ 162 (348)
.|-.|+.||..|.....
T Consensus 25 ~p~vcP~cg~~~~~~~~ 41 (129)
T TIGR02300 25 RPAVSPYTGEQFPPEEA 41 (129)
T ss_pred CCccCCCcCCccCcchh
Confidence 57788888888765433
No 116
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=29.06 E-value=37 Score=32.40 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=23.1
Q ss_pred ceeccccCcccCChhHHHhHhhh--cCCC
Q 045639 219 VHECSICGAEFTSGQALGGHMRR--HRSA 245 (348)
Q Consensus 219 p~~C~~Cgk~F~~~~~L~~H~r~--H~~~ 245 (348)
.+.|-.|.|.|..+..|+.|||. |..-
T Consensus 195 r~~CLyCekifrdkntLkeHMrkK~Hrri 223 (423)
T KOG2482|consen 195 RLRCLYCEKIFRDKNTLKEHMRKKRHRRI 223 (423)
T ss_pred hheeeeeccccCCcHHHHHHHHhccCccc
Confidence 48899999999999999999985 5443
No 117
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=28.59 E-value=33 Score=36.03 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=2.7
Q ss_pred hccCCCC
Q 045639 84 AQCQSTR 90 (348)
Q Consensus 84 a~~~~~~ 90 (348)
+-++...
T Consensus 1290 ~g~~KKR 1296 (1463)
T PHA03308 1290 AGGGKRR 1296 (1463)
T ss_pred CCCcccc
Confidence 3333333
No 118
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=28.19 E-value=2.1e+02 Score=28.23 Aligned_cols=68 Identities=6% Similarity=-0.215 Sum_probs=34.6
Q ss_pred cCCCCCcccccCCCCCccCCchhHhhhhhhcCCCcccc----CCCccCCChHHHHhhhcccccCCCCCchhhccccccCC
Q 045639 140 TGKGGCYVYECKTCNRTFPSFQALGGHRASHKKPKAML----MNDDRLSLKSQHQQQQQQQFLVSKSDDEEEDGNFRNGN 215 (348)
Q Consensus 140 ~~h~g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~----cC~~~f~~~~~L~~H~~~~~C~~f~~~~~L~~H~~~H~ 215 (348)
..+++...+-+..+.+.+...-.+..|...+.++.++. +++..|... +..+..+|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~ 383 (396)
T KOG2461|consen 324 VPATVSVWTGETIPVRTPAGQLIYTQSHSMEVAEPTDMAPNQIWKIYHTGV--------------------LGFLIITTD 383 (396)
T ss_pred ccccccccCcCcccccccccccchhhhhhcccCCCCcccccccccceeccc--------------------cceeeeecc
Confidence 34455555555555555544445555555554444333 333333332 334445666
Q ss_pred CCCceeccccCc
Q 045639 216 SSKVHECSICGA 227 (348)
Q Consensus 216 ~ekp~~C~~Cgk 227 (348)
..+.+.+..|++
T Consensus 384 ~~~~~~~~~~~~ 395 (396)
T KOG2461|consen 384 ESECNNMSFVCK 395 (396)
T ss_pred ccccccccccCC
Confidence 667777766654
No 119
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=28.08 E-value=31 Score=21.37 Aligned_cols=12 Identities=17% Similarity=0.587 Sum_probs=8.6
Q ss_pred ccccCCCCCccC
Q 045639 147 VYECKTCNRTFP 158 (348)
Q Consensus 147 py~C~~Cgk~F~ 158 (348)
...|..|+..|.
T Consensus 25 ~v~C~~C~~~~~ 36 (38)
T TIGR02098 25 KVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEE
Confidence 567888887763
No 120
>COG1773 Rubredoxin [Energy production and conversion]
Probab=27.10 E-value=26 Score=24.20 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=11.8
Q ss_pred CceeccccCcccCCh
Q 045639 218 KVHECSICGAEFTSG 232 (348)
Q Consensus 218 kp~~C~~Cgk~F~~~ 232 (348)
+.|+|.+||..|.-.
T Consensus 2 ~~~~C~~CG~vYd~e 16 (55)
T COG1773 2 KRWRCSVCGYVYDPE 16 (55)
T ss_pred CceEecCCceEeccc
Confidence 358999999988653
No 121
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=26.70 E-value=27 Score=23.34 Aligned_cols=15 Identities=33% Similarity=1.023 Sum_probs=12.1
Q ss_pred cccccCCCCCccCCc
Q 045639 146 YVYECKTCNRTFPSF 160 (348)
Q Consensus 146 kpy~C~~Cgk~F~s~ 160 (348)
+-|+|..||..|...
T Consensus 4 Yey~C~~Cg~~fe~~ 18 (52)
T TIGR02605 4 YEYRCTACGHRFEVL 18 (52)
T ss_pred EEEEeCCCCCEeEEE
Confidence 578999999988643
No 122
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=26.19 E-value=40 Score=26.43 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=22.1
Q ss_pred cccc----CCCCCccCCchhHhhhhhhcCC
Q 045639 147 VYEC----KTCNRTFPSFQALGGHRASHKK 172 (348)
Q Consensus 147 py~C----~~Cgk~F~s~~~L~~H~~~H~~ 172 (348)
-|.| ..|+..+.+...+..|.+.+.|
T Consensus 80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 4789 8999999999999999887543
No 123
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=25.66 E-value=36 Score=21.63 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=12.4
Q ss_pred ceeccccCcccCCh
Q 045639 219 VHECSICGAEFTSG 232 (348)
Q Consensus 219 p~~C~~Cgk~F~~~ 232 (348)
||+|..|++.|-..
T Consensus 12 ~f~C~~C~~~FC~~ 25 (39)
T smart00154 12 GFKCRHCGNLFCGE 25 (39)
T ss_pred CeECCccCCccccc
Confidence 89999999999765
No 124
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=25.01 E-value=18 Score=32.42 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=28.4
Q ss_pred CCceeccccCcccCChhHHHhHhhh---------cC-CCC-----CCcccccccccCC
Q 045639 217 SKVHECSICGAEFTSGQALGGHMRR---------HR-SAP-----VAATAAAMATTNT 259 (348)
Q Consensus 217 ekp~~C~~Cgk~F~~~~~L~~H~r~---------H~-~~~-----~~~~~~~~~~~~~ 259 (348)
+|...|++|++.|....-+.+..|. +. +.. +..|+.|+-++..
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~ 60 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFE 60 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccc
Confidence 4678999999999988666665543 11 111 2478888766543
No 125
>PHA00626 hypothetical protein
Probab=24.62 E-value=36 Score=23.56 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=12.7
Q ss_pred CceeccccCcccCCh
Q 045639 218 KVHECSICGAEFTSG 232 (348)
Q Consensus 218 kp~~C~~Cgk~F~~~ 232 (348)
..|+|..||..|+..
T Consensus 22 nrYkCkdCGY~ft~~ 36 (59)
T PHA00626 22 DDYVCCDCGYNDSKD 36 (59)
T ss_pred cceEcCCCCCeechh
Confidence 469999999999764
No 126
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=24.37 E-value=34 Score=23.08 Aligned_cols=16 Identities=44% Similarity=0.765 Sum_probs=13.1
Q ss_pred CCceeccccCcccCCh
Q 045639 217 SKVHECSICGAEFTSG 232 (348)
Q Consensus 217 ekp~~C~~Cgk~F~~~ 232 (348)
.+.+.|..||+.|.-.
T Consensus 2 Dk~l~C~dCg~~FvfT 17 (49)
T PF13451_consen 2 DKTLTCKDCGAEFVFT 17 (49)
T ss_pred CeeEEcccCCCeEEEe
Confidence 4678999999998754
No 127
>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.
Probab=24.37 E-value=38 Score=26.35 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=16.1
Q ss_pred ccccCCCCCceeccccCcccCC
Q 045639 210 NFRNGNSSKVHECSICGAEFTS 231 (348)
Q Consensus 210 H~~~H~~ekp~~C~~Cgk~F~~ 231 (348)
.+..+.| +|+.|..||.-|.-
T Consensus 71 W~~l~~g-~~~rC~eCG~~fkL 91 (97)
T cd00924 71 WMWLEKG-KPKRCPECGHVFKL 91 (97)
T ss_pred EEEEeCC-CceeCCCCCcEEEE
Confidence 3455666 89999999998853
No 128
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=23.12 E-value=17 Score=31.92 Aligned_cols=24 Identities=21% Similarity=0.084 Sum_probs=14.5
Q ss_pred cccccccCCC------CCCCCccccCcccc
Q 045639 108 EIAQLQINNN------VNNSGMKFNSRRFL 131 (348)
Q Consensus 108 ~~~~c~~~~~------~~~c~~~f~~~~~l 131 (348)
-||.|++|.. ...||..|+..-+.
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai 224 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAI 224 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHH
Confidence 4788888653 34566666655443
No 129
>PF15269 zf-C2H2_7: Zinc-finger
Probab=22.45 E-value=55 Score=21.57 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=18.9
Q ss_pred eeccccCcccCChhHHHhHhhh
Q 045639 220 HECSICGAEFTSGQALGGHMRR 241 (348)
Q Consensus 220 ~~C~~Cgk~F~~~~~L~~H~r~ 241 (348)
|+|-.|......++.|-.||+-
T Consensus 21 ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeecCCcccchHHHHHHHHHH
Confidence 6788888888889999999974
No 130
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=22.45 E-value=61 Score=20.79 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=17.2
Q ss_pred cccCCCCCccCC--chhHhhhhhhcC
Q 045639 148 YECKTCNRTFPS--FQALGGHRASHK 171 (348)
Q Consensus 148 y~C~~Cgk~F~s--~~~L~~H~~~H~ 171 (348)
-.|++||..|.. ...-..|.+-|.
T Consensus 14 ~~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 14 TTCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred cCCCCCCCEECCCCHHHHHHHHHHHh
Confidence 489999998864 455666777663
No 131
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=22.41 E-value=42 Score=19.05 Aligned_cols=10 Identities=20% Similarity=0.726 Sum_probs=8.1
Q ss_pred cccccCCCCC
Q 045639 146 YVYECKTCNR 155 (348)
Q Consensus 146 kpy~C~~Cgk 155 (348)
-.|.|+.||+
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 4799999985
No 132
>PF04641 Rtf2: Rtf2 RING-finger
Probab=21.84 E-value=53 Score=30.25 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=32.8
Q ss_pred CCcccccCCCCCccCCchhHhhhhhhcCCCccccC-CCccCCChHHHHhhhcccccCCCCCchhhccccccCCCCCceec
Q 045639 144 GCYVYECKTCNRTFPSFQALGGHRASHKKPKAMLM-NDDRLSLKSQHQQQQQQQFLVSKSDDEEEDGNFRNGNSSKVHEC 222 (348)
Q Consensus 144 g~kpy~C~~Cgk~F~s~~~L~~H~~~H~~~k~~~c-C~~~f~~~~~L~~H~~~~~C~~f~~~~~L~~H~~~H~~ekp~~C 222 (348)
..-.|.|++.++.|.....+ .|.. ||+.|....- ..- . +-..|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~f-----------v~l~~cG~V~s~~al-------------------ke~-k-----~~~~C 153 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKF-----------VYLRPCGCVFSEKAL-------------------KEL-K-----KSKKC 153 (260)
T ss_pred CCceeECCCCCcccCCceeE-----------EEEcCCCCEeeHHHH-------------------Hhh-c-----ccccc
Confidence 45689999999988432211 1222 8888777652 111 0 23449
Q ss_pred cccCcccCCh
Q 045639 223 SICGAEFTSG 232 (348)
Q Consensus 223 ~~Cgk~F~~~ 232 (348)
.+||+.|...
T Consensus 154 p~c~~~f~~~ 163 (260)
T PF04641_consen 154 PVCGKPFTEE 163 (260)
T ss_pred cccCCccccC
Confidence 9999999743
No 133
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=21.55 E-value=31 Score=30.44 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=0.0
Q ss_pred cCCCCCceeccccCc-ccCChhHHHhHh
Q 045639 213 NGNSSKVHECSICGA-EFTSGQALGGHM 239 (348)
Q Consensus 213 ~H~~ekp~~C~~Cgk-~F~~~~~L~~H~ 239 (348)
.|.-.+.|.|.|||- +|.-+.++.+|-
T Consensus 95 LhGL~~ey~CEICGN~~Y~GrkaFekHF 122 (196)
T PF11931_consen 95 LHGLGVEYKCEICGNQSYKGRKAFEKHF 122 (196)
T ss_dssp ----------------------------
T ss_pred HhCCCCeeeeEeCCCcceecHHHHHHhc
Confidence 345567899999984 677777888884
No 134
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=21.50 E-value=43 Score=32.10 Aligned_cols=58 Identities=17% Similarity=0.368 Sum_probs=36.2
Q ss_pred ccccccccCCCCCCCCccccCccccccccc-cc----------ccCCCC----CcccccCCCCCccCCchhHhhhhh
Q 045639 107 EEIAQLQINNNVNNSGMKFNSRRFLEAPGT-GT----------GTGKGG----CYVYECKTCNRTFPSFQALGGHRA 168 (348)
Q Consensus 107 e~~~~c~~~~~~~~c~~~f~~~~~l~~~~~-~h----------~~~h~g----~kpy~C~~Cgk~F~s~~~L~~H~~ 168 (348)
+++|+|.+ +.|.+.+...-.|..|.. .| -+.|+| .|+|+|++|.+.+.....|.-|+.
T Consensus 347 ~~~~~~~v----p~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~~ 419 (442)
T KOG4124|consen 347 DKPYKCPV----PNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHRT 419 (442)
T ss_pred cCCCCCCC----CcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCceee
Confidence 46788865 347677776666644321 11 122333 578999999998877777766654
No 135
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=21.22 E-value=49 Score=25.14 Aligned_cols=11 Identities=36% Similarity=0.600 Sum_probs=7.3
Q ss_pred cccccCCCCCc
Q 045639 146 YVYECKTCNRT 156 (348)
Q Consensus 146 kpy~C~~Cgk~ 156 (348)
..|.|+.|++.
T Consensus 34 ~~~~Cp~C~~~ 44 (89)
T COG1997 34 AKHVCPFCGRT 44 (89)
T ss_pred cCCcCCCCCCc
Confidence 35777777764
No 136
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=21.18 E-value=53 Score=31.53 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=23.9
Q ss_pred ccCCCCCceeccccC-cccCChhHHHhHhh
Q 045639 212 RNGNSSKVHECSICG-AEFTSGQALGGHMR 240 (348)
Q Consensus 212 ~~H~~ekp~~C~~Cg-k~F~~~~~L~~H~r 240 (348)
+.|.-.+-|.|.||| +.+..+..+.+|-.
T Consensus 367 klhgLd~ef~CEICgNyvy~GR~~FdrHF~ 396 (470)
T COG5188 367 KLHGLDIEFECEICGNYVYYGRDRFDRHFE 396 (470)
T ss_pred HhcCCCcceeeeecccccccchHHHHhhhh
Confidence 456678899999999 88888888888843
No 137
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=20.88 E-value=51 Score=27.92 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=27.1
Q ss_pred CCCCCceeccccCcccCChhHHHhHhhhcCCCCCCcccccccc
Q 045639 214 GNSSKVHECSICGAEFTSGQALGGHMRRHRSAPVAATAAAMAT 256 (348)
Q Consensus 214 H~~ekp~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~ 256 (348)
-....-|.|+.|+..|+.-.++. .-|.|+.|+..
T Consensus 104 e~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~ 137 (158)
T TIGR00373 104 ETNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAM 137 (158)
T ss_pred ccCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCE
Confidence 34556799999999999999885 25889999765
No 138
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=20.52 E-value=49 Score=28.69 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=26.3
Q ss_pred CCCCceeccccCcccCChhHHHhHhhhcCCCCCCccccccccc
Q 045639 215 NSSKVHECSICGAEFTSGQALGGHMRRHRSAPVAATAAAMATT 257 (348)
Q Consensus 215 ~~ekp~~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~ 257 (348)
....-|.|+.|++.|+.-.++. .-|.|+.|+...
T Consensus 113 ~~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L 146 (178)
T PRK06266 113 ENNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEML 146 (178)
T ss_pred cCCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCC
Confidence 3445699999999999988874 258899997654
Done!