BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045642
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
Length = 338
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 13/220 (5%)
Query: 165 KKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKR 224
++L+ +I A E I + E I E + I +VI+T HSK + A E+ +
Sbjct: 107 EQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGK 166
Query: 225 SFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGV 284
+V + + PK++G I AKEL G+ I + DSA + + V++G ++ NG V
Sbjct: 167 DIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAV 226
Query: 285 IAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNL--EVLLNEMRCPSELLNFEEFSD 342
I G ++AL AK+H V ++ A T++ +P + +++ EMR P+E++ +E
Sbjct: 227 INKIGTALIALTAKEHRVWTMIAAETYK---FHPETMLGQLVEIEMRDPTEVIPEDELK- 282
Query: 343 CIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSP 382
+ + V NPAFD PPE + + +T+ G P
Sbjct: 283 -------TWPKNIEVWNPAFDVTPPEYVDVIITERGIIPP 315
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
Length = 338
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 13/220 (5%)
Query: 165 KKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKR 224
++L+ +I A E I + E I E + I +VI+T HSK + A E+ +
Sbjct: 107 EQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGK 166
Query: 225 SFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGV 284
+V + + PK++G I AKEL G+ I + DSA + + V++G ++ NG V
Sbjct: 167 DIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAV 226
Query: 285 IAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNL--EVLLNEMRCPSELLNFEEFSD 342
I G ++AL AK+H V ++ A T++ +P + +++ EMR P+E++ +E
Sbjct: 227 INKIGTALIALTAKEHRVWTMIAAETYK---FHPETMLGQLVEIEMRDPTEVIPEDELK- 282
Query: 343 CIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSP 382
+ + V NPAFD PPE + + +T+ G P
Sbjct: 283 -------TWPKNIEVWNPAFDVTPPEYVDVIITERGIIPP 315
>pdb|3A9C|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 326
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 13/219 (5%)
Query: 165 KKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILT-LGHSKFVKEFLCAAKEKK 223
++L+ +I A E I + E I E + I +VI+T HSK + A E+
Sbjct: 97 EQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQG 156
Query: 224 RSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGG 283
+ +V + + PK++G I AKEL G+ I + DSA + + V++G ++ NG
Sbjct: 157 KDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGA 216
Query: 284 VIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDC 343
VI G ++AL AK+H V ++ A T++ +P + V + EMR P+E++ +E
Sbjct: 217 VINKIGTALIALTAKEHRVWTMIAAETYK---FHPETMLVEI-EMRDPTEVIPEDELK-- 270
Query: 344 IDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSP 382
+ + V NPAFD PPE + + +T+ G P
Sbjct: 271 ------TWPKNIEVWNPAFDVTPPEYVDVIITERGIIPP 303
>pdb|3A9C|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 321
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 111/221 (50%), Gaps = 14/221 (6%)
Query: 165 KKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILT-LGHSKFVKEFLCAAKEKK 223
++L+ +I A E I + E I E + I +VI+T HSK + A E+
Sbjct: 89 EQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQG 148
Query: 224 RSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGG 283
+ +V + + PK++G I AKEL G+ I + DSA + + V++G ++ NG
Sbjct: 149 KDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGA 208
Query: 284 VIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNL--EVLLNEMRCPSELLNFEEFS 341
VI G ++AL AK+H V ++ A T++ +P + +++ EMR P+E++ +E
Sbjct: 209 VINKIGTALIALTAKEHRVWTMIAAETYK---FHPETMLGQLVEIEMRDPTEVIPEDELK 265
Query: 342 DCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSP 382
+ + V NPAFD PPE + + +T+ G P
Sbjct: 266 --------TWPKNIEVWNPAFDVTPPEYVDVIITERGIIPP 298
>pdb|3A9C|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 323
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 111/221 (50%), Gaps = 14/221 (6%)
Query: 165 KKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILT-LGHSKFVKEFLCAAKEKK 223
++L+ +I A E I + E I E + I +VI+T HSK + A E+
Sbjct: 91 EQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQG 150
Query: 224 RSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGG 283
+ +V + + PK++G I AKEL G+ I + DSA + + V++G ++ NG
Sbjct: 151 KDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGA 210
Query: 284 VIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNL--EVLLNEMRCPSELLNFEEFS 341
VI G ++AL AK+H V ++ A T++ +P + +++ EMR P+E++ +E
Sbjct: 211 VINKIGTALIALTAKEHRVWTMIAAETYK---FHPETMLGQLVEIEMRDPTEVIPEDELK 267
Query: 342 DCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSP 382
+ + V NPAFD PPE + + +T+ G P
Sbjct: 268 --------TWPKNIEVWNPAFDVTPPEYVDVIITERGIIPP 300
>pdb|3A9C|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 322
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 111/221 (50%), Gaps = 14/221 (6%)
Query: 165 KKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILT-LGHSKFVKEFLCAAKEKK 223
++L+ +I A E I + E I E + I +VI+T HSK + A E+
Sbjct: 90 EQLRFVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQG 149
Query: 224 RSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGG 283
+ +V + + PK++G I AKEL G+ I + DSA + + V++G ++ NG
Sbjct: 150 KDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGA 209
Query: 284 VIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNL--EVLLNEMRCPSELLNFEEFS 341
VI G ++AL AK+H V ++ A T++ +P + +++ EMR P+E++ +E
Sbjct: 210 VINKIGTALIALTAKEHRVWTMIAAETYK---FHPETMLGQLVEIEMRDPTEVIPEDELK 266
Query: 342 DCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSP 382
+ + V NPAFD PPE + + +T+ G P
Sbjct: 267 --------TWPKNIEVWNPAFDVTPPEYVDVIITERGIIPP 299
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|B Chain B, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|C Chain C, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|D Chain D, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|E Chain E, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|F Chain F, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|G Chain G, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|H Chain H, Crystal Structure Of Human Eif2b Alpha
Length = 315
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 11/208 (5%)
Query: 178 LIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKF 237
+ I+ R IA+ I ILT +S+ V L AA K+ F V++ + P
Sbjct: 100 FLRRISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDL 159
Query: 238 EGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAA 297
G AK L + V+ D+AV + + ++VIVG V+ NGG+I G + A+ A
Sbjct: 160 SGKKXAKALCHLNVPVTVVLDAAVGYIXEKADLVIVGAEGVVENGGIINKIGTNQXAVCA 219
Query: 298 KKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHV 357
K + PF VVA + + L+P LN+ P + F+ +D + +A + L
Sbjct: 220 KAQNKPFYVVAESFKFVRLFP------LNQQDVPDK---FKYKADTLK--VAQTGQDLKE 268
Query: 358 VNPAFDYVPPELIRLFVTDIGGYSPSYI 385
+P DY P LI L TD+G +PS +
Sbjct: 269 EHPWVDYTAPSLITLLFTDLGVLTPSAV 296
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
pdb|1VB5|B Chain B, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
Length = 276
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 21/206 (10%)
Query: 177 ELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPK 236
E + + + +A +LI +VI+T S V E + AKE+K+ F+V + + +P
Sbjct: 87 EFLRRMEEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPD 146
Query: 237 FEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALA 296
+EG LA+EL+ G++ VITD+ + ++ IVG + +G V+ AG ++LALA
Sbjct: 147 YEGLHLARELEFSGIEFEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALA 206
Query: 297 AKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLH 356
++ +PF V A T++ +V+L E D I +
Sbjct: 207 CHENAIPFYVAAETYKFHPTLKSG-DVMLME-------------RDLIRGNV-------R 245
Query: 357 VVNPAFDYVPPELIRLFVTDIGGYSP 382
+ N FD P + +R +T++G P
Sbjct: 246 IRNVLFDVTPWKYVRGIITELGIVIP 271
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 22/234 (9%)
Query: 163 SAKKLKSELI-KAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFV--KEFLCA- 218
S + K+ L+ +A+ +ED TCR I + A++L + + I+T+ ++ + + A
Sbjct: 137 SVNEAKTNLVHEAIQIQVEDEETCRL-IGQNALQLFKKGDRIMTICNAGSIATSRYGTAL 195
Query: 219 -----AKEKKRSFEVFIADGAPKFEG-HILAKELDKKGLKAIVITDS-AVFAMISR-VNM 270
AK+K ++ + P +G + A EL + G+ +ITDS A M + ++
Sbjct: 196 APFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQISA 255
Query: 271 VIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRC 330
VIVG + NG G + LA+ A D+PF V A + ++ + E R
Sbjct: 256 VIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEE-RD 314
Query: 331 PSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSY 384
P E+ G+ ++ S + V NPAFD P +LI +T+ G + +Y
Sbjct: 315 PEEVRQIS--------GVRTAPSNVPVFNPAFDITPHDLISGIITEKGIMTGNY 360
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|B Chain B, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|C Chain C, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|D Chain D, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
Length = 347
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 26/245 (10%)
Query: 153 ENIFAGKADKSA--KKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSK 210
E +F AD+ + L++E +K E IE + I + +LI ILT ++
Sbjct: 104 EKVFFENADRENLFEILENEALKXAYEDIE----VNKAIGKNGAQLIKDGSTILTHCNAG 159
Query: 211 FVKEF--------LCAAKEKKRSFEVFIADGAPKFEG-HILAKELDKKGLKAIVITDSAV 261
+ + AA E + VF + P +G + A EL K G++ VITD+
Sbjct: 160 ALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELXKDGIEVYVITDNXA 219
Query: 262 FAMISR--VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPH 319
+ R ++ V+VG + NG G + LA+ AK++++PF V A +
Sbjct: 220 GWLXKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRS 279
Query: 320 NLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGG 379
E+ + E R EE + C IA + V+NPAFD LI +T+ G
Sbjct: 280 GEEIPIEERRP-------EEVTHCGGNRIAPEG--VKVLNPAFDVTENTLITAIITEKGV 330
Query: 380 YSPSY 384
P +
Sbjct: 331 IRPPF 335
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|B Chain B, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|C Chain C, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|D Chain D, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
Length = 351
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 34/269 (12%)
Query: 138 EHLPDSAP--ACQTFSSENIFAGKADKSAKKLKSELIKAVNELI---------EDINTCR 186
EHL +A A ++ N+F G LK E ++ V EL ED+ R
Sbjct: 75 EHLKKAADFLASTRPTAVNLFVGIERALNAALKGESVEEVKELALREAEKLAEEDVERNR 134
Query: 187 EGIAEQAMELIHQNEVILTLGHSKFVKEF--------LCAAKEKKRSFEVFIADGAPKFE 238
+ + E EL+ +V+LT ++ + + +A E+ + V + P +
Sbjct: 135 K-MGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQ 193
Query: 239 G-HILAKELDKKGLKAIVITDSAVFAMISR--VNMVIVGVHAVMANGGVIAPAGLHVLAL 295
G + EL + G+ +ITDS V ++ + V+ VIVG ++ + V G + +++
Sbjct: 194 GSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTVSV 252
Query: 296 AAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLL 355
AK H++PF V A + + ++ E R P E L F C IA + +
Sbjct: 253 VAKHHNIPFYVAAPKATFD--WERTAKDVVIEER-PREELIF-----CGKRQIAPLN--V 302
Query: 356 HVVNPAFDYVPPELIRLFVTDIGGYSPSY 384
V NPAFD P E + +T+ G P Y
Sbjct: 303 KVYNPAFDPTPLENVTALITEYGVIYPPY 331
>pdb|1W2W|B Chain B, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|F Chain F, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|J Chain J, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|N Chain N, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
Length = 191
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 20/177 (11%)
Query: 224 RSFEVFIADGAPKFEG-HILAKELDKKGLKAIVITDSAVFAMISR----VNMVIVGVHAV 278
R VF + P +G + A EL + + +ITDS++ I + VG +
Sbjct: 3 RXGHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRI 62
Query: 279 MANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSEL---- 334
+ NG G LA+ K+ + F VVA + ++ ++++ E R P E
Sbjct: 63 VRNGDTANKIGTLQLAVICKQFGIKFFVVAPKTTIDNVTETGDDIIVEE-RNPEEFKVVT 121
Query: 335 ----------LNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYS 381
L E + I + + ++V NPAFD P ELI +T+ G ++
Sbjct: 122 GTVINPENGSLILNESGEPITGKVGIAPLEINVWNPAFDITPHELIDGIITEEGVFT 178
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
pdb|2A0U|B Chain B, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
Length = 383
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 228 VFIADGAPKFEG-HILAKELDKKGLKAIVITDSAVFAMI--SRVNMVIVGVHAVMANGGV 284
V+ + P +G + E ++ + +I D A ++ +++ V+VG + NG
Sbjct: 214 VYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLXLNRKIDAVVVGADRICQNGDT 273
Query: 285 IAPAGLHVLALAAKKHDVPFVVVA--STHELCSLYPHNLEVLLNEMRCPSELLNFEEFSD 342
G + LA++AK H V V A +T ++ + +++E+ E R P+E+ +
Sbjct: 274 ANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEI---EEREPTEITT----NL 326
Query: 343 CIDYGIASSSSLLHVVNPAFDYVPPELIR-LFVTDIGGYSPS 383
+ + L + NP FD P ELI +T+ G +P+
Sbjct: 327 VTKQRVVADGPHLSIWNPVFDITPSELITGGIITEKGVQAPA 368
>pdb|2FAM|A Chain A, X-Ray Crystal Structure Of Ferric Aplysia Limacina
Myoglobin In Different Liganded States
Length = 147
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 132 LLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKKLKSELIKAVNELIEDINTCREGIAE 191
L+A+FE PDSA F +++ KA + + S + +NE + N G
Sbjct: 29 FLVALFEKFPDSANFFADFKGKSVADIKASPKLRDVSSRIFTRLNEFVN--NAANAGKMS 86
Query: 192 QAMELIHQNEVILTLGHSKF 211
+ + V +G ++F
Sbjct: 87 AMLSQFAKEHVGFGVGSAQF 106
>pdb|2FAL|A Chain A, X-Ray Crystal Structure Of Ferric Aplysia Limacina
Myoglobin In Different Liganded States
pdb|5MBA|A Chain A, Binding Mode Of Azide To Ferric Aplysia Limacina
Myoglobin. Crystallographic Analysis At 1.9 Angstroms
Resolution
pdb|1MBA|A Chain A, Aplysia Limacina Myoglobin. Crystallographic Analysis At
1.6 Angstroms Resolution
pdb|3MBA|A Chain A, Aplysia Limacina Myoglobin. Crystallographic Analysis At
1.6 Angstroms Resolution
pdb|4MBA|A Chain A, Aplysia Limacina Myoglobin. Crystallographic Analysis At
1.6 Angstroms Resolution
Length = 147
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 132 LLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKKLKSELIKAVNELIEDINTCREGIAE 191
L+A+FE PDSA F +++ KA + + S + +NE + N G
Sbjct: 29 FLVALFEKFPDSANFFADFKGKSVADIKASPKLRDVSSRIFTRLNEFVN--NAANAGKMS 86
Query: 192 QAMELIHQNEVILTLGHSKF 211
+ + V +G ++F
Sbjct: 87 AMLSQFAKEHVGFGVGSAQF 106
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 212 VKEFLCAAKEKKRSFEVFIADG--APKFEGHILAKELDKKGLKAIVIT 257
V +FLC + V G AP FEG IL DK G ++VIT
Sbjct: 248 VAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVIT 295
>pdb|1DM1|A Chain A, 2.0 A Crystal Structure Of The Double Mutant H(E7)v,
T(E10) R Of Myoglobin From Aplysia Limacina
Length = 146
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 132 LLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKKLKSELIKAVNELIEDINTCREGIAE 191
L+A+FE PDSA F +++ KA + S + +NE + N G
Sbjct: 28 FLVALFEKFPDSANFFADFKGKSVADIKASPKLRDHSSTIFTRLNEFVN--NAANAGKMS 85
Query: 192 QAMELIHQNEVILTLGHSKF 211
+ + V +G ++F
Sbjct: 86 AMLSQFAKEHVGFGVGSAQF 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,683,644
Number of Sequences: 62578
Number of extensions: 400619
Number of successful extensions: 1192
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1165
Number of HSP's gapped (non-prelim): 24
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)