Query 045642
Match_columns 406
No_of_seqs 176 out of 1214
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:00:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1465 Translation initiation 100.0 3.4E-85 7.3E-90 617.9 32.6 347 4-400 7-353 (353)
2 TIGR00511 ribulose_e2b2 ribose 100.0 1.1E-72 2.3E-77 553.8 32.9 300 8-395 2-301 (301)
3 PRK08535 translation initiatio 100.0 1.1E-72 2.4E-77 556.1 32.7 305 3-395 2-306 (310)
4 COG1184 GCD2 Translation initi 100.0 4.2E-71 9.2E-76 532.8 30.8 300 4-394 2-301 (301)
5 TIGR00524 eIF-2B_rel eIF-2B al 100.0 2.3E-67 5.1E-72 515.6 30.8 290 7-382 3-303 (303)
6 PF01008 IF-2B: Initiation fac 100.0 6.3E-68 1.4E-72 516.8 25.5 281 19-382 1-282 (282)
7 PRK05720 mtnA methylthioribose 100.0 4.7E-64 1E-68 498.1 31.6 301 7-395 32-343 (344)
8 KOG1467 Translation initiation 100.0 5E-64 1.1E-68 498.7 24.7 320 3-394 232-553 (556)
9 PRK08335 translation initiatio 100.0 3E-62 6.6E-67 470.9 30.3 271 5-384 3-273 (275)
10 TIGR00512 salvage_mtnA S-methy 100.0 3.9E-62 8.5E-67 481.2 30.2 288 7-382 29-331 (331)
11 PRK06036 translation initiatio 100.0 1.2E-61 2.6E-66 479.1 28.7 292 7-386 32-334 (339)
12 PRK05772 translation initiatio 100.0 4.1E-60 8.9E-65 470.5 31.7 304 7-392 45-360 (363)
13 PRK08334 translation initiatio 100.0 2.5E-59 5.4E-64 462.8 32.3 301 7-394 43-354 (356)
14 PRK06371 translation initiatio 100.0 1.8E-58 3.8E-63 453.5 27.5 276 7-388 41-327 (329)
15 KOG1466 Translation initiation 100.0 3.7E-55 8E-60 406.5 25.7 299 7-392 13-312 (313)
16 COG0182 Predicted translation 100.0 7.5E-54 1.6E-58 410.3 27.5 296 6-387 32-339 (346)
17 PRK06372 translation initiatio 100.0 3.7E-54 8.1E-59 409.4 21.7 250 12-386 3-252 (253)
18 KOG1468 Predicted translation 100.0 1.5E-47 3.2E-52 358.2 22.3 299 7-387 32-347 (354)
19 TIGR00021 rpiA ribose 5-phosph 98.0 0.00011 2.3E-09 69.5 12.5 119 187-317 3-124 (218)
20 PRK00702 ribose-5-phosphate is 97.9 0.00014 3E-09 68.9 12.6 120 185-317 6-128 (220)
21 PRK10434 srlR DNA-bindng trans 97.8 0.00076 1.6E-08 65.3 15.5 121 186-315 78-213 (256)
22 cd01398 RPI_A RPI_A: Ribose 5- 97.8 0.00028 6.1E-09 66.5 11.3 117 187-317 3-124 (213)
23 PRK09802 DNA-binding transcrip 97.6 0.0016 3.5E-08 63.4 14.3 121 186-315 93-228 (269)
24 PRK10906 DNA-binding transcrip 97.5 0.0047 1E-07 59.7 15.6 121 186-315 78-213 (252)
25 PF00455 DeoRC: DeoR C termina 97.3 0.0034 7.4E-08 56.4 11.9 123 185-316 5-142 (161)
26 PRK13509 transcriptional repre 97.3 0.0047 1E-07 59.6 13.4 119 186-315 80-212 (251)
27 PRK10411 DNA-binding transcrip 97.2 0.016 3.5E-07 55.5 15.3 121 185-315 79-214 (240)
28 PRK10681 DNA-binding transcrip 96.6 0.024 5.2E-07 54.7 11.9 121 186-315 79-214 (252)
29 PLN02384 ribose-5-phosphate is 96.2 0.1 2.2E-06 50.6 13.2 119 187-317 37-159 (264)
30 COG1349 GlpR Transcriptional r 96.2 0.095 2.1E-06 50.6 12.8 122 186-316 78-214 (253)
31 PRK13978 ribose-5-phosphate is 95.4 0.25 5.5E-06 47.0 12.2 119 186-316 8-129 (228)
32 COG0120 RpiA Ribose 5-phosphat 95.4 0.3 6.4E-06 46.3 12.2 119 187-317 8-128 (227)
33 COG0426 FpaA Uncharacterized f 88.2 12 0.00026 38.5 13.6 144 170-315 183-343 (388)
34 TIGR01437 selA_rel uncharacter 87.8 7.2 0.00016 39.4 12.0 134 165-306 27-184 (363)
35 KOG0259 Tyrosine aminotransfer 85.7 8.1 0.00018 39.6 10.7 118 182-306 105-237 (447)
36 PRK10886 DnaA initiator-associ 85.1 32 0.0007 31.9 14.1 39 265-310 107-145 (196)
37 KOG3075 Ribose 5-phosphate iso 84.6 8 0.00017 37.3 9.6 118 188-316 30-151 (261)
38 PRK02947 hypothetical protein; 84.5 39 0.00085 32.4 14.7 107 166-273 6-167 (246)
39 TIGR00474 selA seryl-tRNA(sec) 84.4 28 0.00061 36.6 14.6 115 190-308 128-252 (454)
40 cd05005 SIS_PHI Hexulose-6-pho 82.6 16 0.00034 32.9 10.6 103 169-274 5-126 (179)
41 TIGR03127 RuMP_HxlB 6-phospho 82.4 15 0.00032 33.0 10.2 86 190-275 20-124 (179)
42 PF04016 DUF364: Domain of unk 81.8 7 0.00015 34.6 7.6 98 197-318 8-105 (147)
43 PRK07810 O-succinylhomoserine 81.5 27 0.00059 35.9 13.1 102 195-306 81-190 (403)
44 PF10087 DUF2325: Uncharacteri 81.2 9.6 0.00021 30.9 7.8 58 243-307 16-81 (97)
45 PF02254 TrkA_N: TrkA-N domain 80.7 6.3 0.00014 32.4 6.7 91 203-310 1-98 (116)
46 PRK11557 putative DNA-binding 79.6 23 0.00049 34.2 11.2 86 190-275 118-227 (278)
47 TIGR03402 FeS_nifS cysteine de 79.3 35 0.00075 34.2 12.8 103 199-306 59-171 (379)
48 PRK13937 phosphoheptose isomer 79.1 48 0.001 30.2 12.6 35 240-274 123-157 (188)
49 PRK13936 phosphoheptose isomer 78.8 54 0.0012 30.2 13.4 36 240-275 128-166 (197)
50 PRK08133 O-succinylhomoserine 78.5 35 0.00077 34.8 12.7 99 196-306 73-181 (390)
51 PF01073 3Beta_HSD: 3-beta hyd 78.5 6.5 0.00014 38.4 7.0 106 205-313 2-119 (280)
52 TIGR01470 cysG_Nterm siroheme 78.3 10 0.00022 35.4 7.9 95 199-309 8-102 (205)
53 PLN02651 cysteine desulfurase 78.2 45 0.00097 33.3 13.2 103 199-306 60-173 (364)
54 PF05368 NmrA: NmrA-like famil 77.2 14 0.00029 34.4 8.5 100 203-310 1-103 (233)
55 PF05159 Capsule_synth: Capsul 77.1 15 0.00033 35.3 9.0 86 209-310 139-227 (269)
56 PRK08134 O-acetylhomoserine am 76.6 36 0.00079 35.4 12.3 105 195-306 75-184 (433)
57 TIGR02326 transamin_PhnW 2-ami 76.6 54 0.0012 32.6 13.2 119 178-307 33-165 (363)
58 TIGR03576 pyridox_MJ0158 pyrid 76.5 50 0.0011 33.2 12.9 135 165-306 36-173 (346)
59 cd06454 KBL_like KBL_like; thi 76.4 52 0.0011 32.1 12.9 111 187-306 49-167 (349)
60 PRK01438 murD UDP-N-acetylmura 75.6 15 0.00033 38.4 9.2 72 199-275 15-86 (480)
61 PRK07582 cystathionine gamma-l 75.3 34 0.00074 34.6 11.4 96 199-306 65-167 (366)
62 TIGR03235 DNA_S_dndA cysteine 75.2 68 0.0015 31.7 13.5 103 199-306 59-173 (353)
63 PRK00025 lpxB lipid-A-disaccha 75.1 38 0.00083 33.7 11.7 69 224-309 219-288 (380)
64 PRK08248 O-acetylhomoserine am 75.0 34 0.00073 35.6 11.5 104 196-307 76-185 (431)
65 PRK14106 murD UDP-N-acetylmura 75.0 17 0.00036 37.6 9.3 75 199-277 4-78 (450)
66 PRK09496 trkA potassium transp 74.6 36 0.00079 35.0 11.7 62 193-256 198-260 (453)
67 cd01494 AAT_I Aspartate aminot 74.2 38 0.00083 28.7 10.1 104 194-306 10-127 (170)
68 PRK13938 phosphoheptose isomer 74.1 69 0.0015 29.7 12.2 35 239-273 129-163 (196)
69 cd00293 USP_Like Usp: Universa 74.0 44 0.00095 26.7 10.5 89 215-307 19-130 (130)
70 COG1929 Glycerate kinase [Carb 73.6 4.1 8.9E-05 41.2 4.1 51 261-313 278-328 (378)
71 PRK05613 O-acetylhomoserine am 73.1 42 0.00092 35.0 11.7 105 195-306 80-190 (437)
72 PRK05958 8-amino-7-oxononanoat 73.0 77 0.0017 31.4 13.3 111 187-306 87-203 (385)
73 PF03853 YjeF_N: YjeF-related 72.9 69 0.0015 28.7 11.7 123 182-307 5-137 (169)
74 cd00614 CGS_like CGS_like: Cys 72.8 38 0.00082 34.2 11.0 99 200-306 56-160 (369)
75 PRK15116 sulfur acceptor prote 72.5 62 0.0013 31.6 11.9 112 188-310 19-155 (268)
76 PRK10874 cysteine sulfinate de 72.4 71 0.0015 32.2 13.0 102 200-306 82-195 (401)
77 COG1737 RpiR Transcriptional r 72.1 48 0.001 32.3 11.2 111 167-277 96-231 (281)
78 PRK06702 O-acetylhomoserine am 72.0 62 0.0013 33.8 12.6 95 201-306 78-182 (432)
79 PRK11543 gutQ D-arabinose 5-ph 71.8 63 0.0014 31.8 12.2 108 167-274 9-140 (321)
80 PRK09331 Sep-tRNA:Cys-tRNA syn 71.5 57 0.0012 33.0 12.1 100 193-306 72-193 (387)
81 cd01989 STK_N The N-terminal d 71.3 61 0.0013 27.4 10.6 39 267-308 103-144 (146)
82 PRK11337 DNA-binding transcrip 71.0 56 0.0012 31.7 11.5 86 190-275 130-239 (292)
83 TIGR01326 OAH_OAS_sulfhy OAH/O 70.7 50 0.0011 34.1 11.6 102 196-306 69-177 (418)
84 TIGR01140 L_thr_O3P_dcar L-thr 70.6 41 0.0009 33.1 10.6 99 199-306 64-163 (330)
85 PRK13479 2-aminoethylphosphona 70.4 87 0.0019 31.1 13.0 99 202-307 59-167 (368)
86 COG4635 HemG Flavodoxin [Energ 70.0 11 0.00023 34.2 5.4 77 230-308 6-86 (175)
87 COG2014 Uncharacterized conser 69.7 25 0.00054 33.3 7.9 100 190-316 103-205 (250)
88 TIGR01325 O_suc_HS_sulf O-succ 69.7 79 0.0017 32.1 12.6 95 200-306 70-174 (380)
89 PLN02409 serine--glyoxylate am 69.6 1E+02 0.0022 31.4 13.5 98 202-306 63-174 (401)
90 cd00287 ribokinase_pfkB_like r 69.3 16 0.00035 32.4 6.8 62 230-308 30-91 (196)
91 TIGR03392 FeS_syn_CsdA cystein 69.3 1.2E+02 0.0027 30.5 14.0 101 200-306 79-192 (398)
92 PRK07179 hypothetical protein; 69.1 91 0.002 31.7 13.0 133 165-306 71-216 (407)
93 PRK08249 cystathionine gamma-s 68.8 42 0.00091 34.5 10.4 99 196-306 76-184 (398)
94 PF00535 Glycos_transf_2: Glyc 68.7 15 0.00033 30.7 6.2 81 202-282 3-94 (169)
95 PRK09932 glycerate kinase II; 68.7 6.9 0.00015 40.2 4.5 49 263-313 280-328 (381)
96 PRK07812 O-acetylhomoserine am 68.6 55 0.0012 34.2 11.4 97 201-308 86-192 (436)
97 TIGR01329 cysta_beta_ly_E cyst 68.4 67 0.0015 32.6 11.8 96 200-307 63-167 (378)
98 PLN02206 UDP-glucuronate decar 68.2 18 0.00039 37.8 7.7 108 199-310 118-234 (442)
99 TIGR01979 sufS cysteine desulf 68.1 1.4E+02 0.003 30.1 14.2 104 200-307 81-195 (403)
100 cd06451 AGAT_like Alanine-glyo 67.5 1.3E+02 0.0028 29.6 14.0 98 202-307 53-160 (356)
101 TIGR00273 iron-sulfur cluster- 67.4 48 0.001 34.7 10.5 151 165-318 39-232 (432)
102 PF00266 Aminotran_5: Aminotra 67.3 71 0.0015 31.9 11.6 102 200-306 62-174 (371)
103 PRK05968 hypothetical protein; 67.1 96 0.0021 31.6 12.6 104 196-307 75-183 (389)
104 PLN03209 translocon at the inn 66.8 19 0.00041 39.0 7.6 112 197-311 77-209 (576)
105 PRK01710 murD UDP-N-acetylmura 66.8 44 0.00095 34.9 10.3 92 200-305 14-105 (458)
106 PRK13520 L-tyrosine decarboxyl 66.3 96 0.0021 30.6 12.3 100 200-306 77-186 (371)
107 PRK09295 bifunctional cysteine 66.1 1.1E+02 0.0023 31.1 12.8 115 182-306 69-199 (406)
108 cd06453 SufS_like Cysteine des 66.1 1.3E+02 0.0029 29.7 13.3 102 201-308 63-176 (373)
109 PRK07503 methionine gamma-lyas 65.9 79 0.0017 32.5 11.8 98 201-306 82-185 (403)
110 TIGR00045 glycerate kinase. Th 65.6 7.7 0.00017 39.8 4.2 50 263-314 279-328 (375)
111 PRK08574 cystathionine gamma-s 65.2 86 0.0019 32.0 11.8 102 197-306 66-172 (385)
112 CHL00194 ycf39 Ycf39; Provisio 65.2 41 0.00089 32.9 9.2 102 202-310 2-110 (317)
113 PRK07568 aspartate aminotransf 65.1 83 0.0018 31.6 11.7 96 197-306 86-200 (397)
114 COG0794 GutQ Predicted sugar p 64.8 98 0.0021 29.0 11.0 74 199-273 39-136 (202)
115 PF08484 Methyltransf_14: C-me 64.6 13 0.00029 33.3 5.1 68 173-241 41-108 (160)
116 PLN02260 probable rhamnose bio 64.6 33 0.00071 37.6 9.2 87 224-311 379-483 (668)
117 TIGR02006 IscS cysteine desulf 64.3 1.2E+02 0.0027 30.7 12.9 103 199-306 64-177 (402)
118 TIGR01328 met_gam_lyase methio 64.3 76 0.0017 32.4 11.3 99 201-306 76-179 (391)
119 PRK05839 hypothetical protein; 64.3 92 0.002 31.3 11.8 105 197-306 81-193 (374)
120 PRK05452 anaerobic nitric oxid 63.4 1.7E+02 0.0036 31.0 13.9 100 212-313 239-348 (479)
121 PLN02778 3,5-epimerase/4-reduc 62.1 39 0.00085 33.0 8.4 83 227-310 11-111 (298)
122 PRK12320 hypothetical protein; 62.1 27 0.00058 38.8 7.8 99 202-310 2-103 (699)
123 PLN02214 cinnamoyl-CoA reducta 62.0 53 0.0012 32.6 9.5 108 199-308 9-125 (342)
124 PRK06234 methionine gamma-lyas 61.9 1.1E+02 0.0023 31.4 11.9 94 201-306 81-186 (400)
125 TIGR03590 PseG pseudaminic aci 61.8 87 0.0019 30.4 10.7 90 201-308 172-267 (279)
126 cd00611 PSAT_like Phosphoserin 61.7 1E+02 0.0022 30.9 11.4 112 178-306 42-168 (355)
127 PRK05939 hypothetical protein; 61.6 1.3E+02 0.0027 31.0 12.3 94 201-306 64-166 (397)
128 PRK07865 N-succinyldiaminopime 61.5 1E+02 0.0022 30.7 11.5 95 197-306 84-186 (364)
129 PRK06084 O-acetylhomoserine am 61.3 84 0.0018 32.6 11.1 97 201-306 75-178 (425)
130 PRK08861 cystathionine gamma-s 61.0 86 0.0019 32.2 10.9 99 200-306 69-173 (388)
131 PRK15482 transcriptional regul 60.9 1.2E+02 0.0026 29.3 11.6 86 190-275 125-234 (285)
132 PRK11302 DNA-binding transcrip 60.8 1.3E+02 0.0027 28.9 11.6 38 236-274 188-225 (284)
133 cd01987 USP_OKCHK USP domain i 60.8 91 0.002 25.4 9.8 62 243-307 55-123 (124)
134 PRK08064 cystathionine beta-ly 60.7 1E+02 0.0022 31.4 11.5 93 201-306 71-173 (390)
135 cd05006 SIS_GmhA Phosphoheptos 60.4 1.3E+02 0.0027 26.9 11.5 39 237-275 115-153 (177)
136 cd00610 OAT_like Acetyl ornith 60.3 1.7E+02 0.0036 29.4 12.9 140 165-306 55-230 (413)
137 PRK05764 aspartate aminotransf 59.7 1E+02 0.0022 31.0 11.2 96 197-306 89-202 (393)
138 PRK09028 cystathionine beta-ly 59.7 1.1E+02 0.0023 31.6 11.4 94 201-306 78-181 (394)
139 PRK05443 polyphosphate kinase; 59.6 25 0.00054 39.1 7.0 53 206-258 376-430 (691)
140 cd01424 MGS_CPS_II Methylglyox 59.3 98 0.0021 25.3 9.7 91 201-307 2-101 (110)
141 PTZ00433 tyrosine aminotransfe 59.1 1.1E+02 0.0024 31.2 11.4 96 197-306 102-215 (412)
142 CHL00144 odpB pyruvate dehydro 58.9 70 0.0015 32.1 9.7 70 240-314 217-298 (327)
143 TIGR03492 conserved hypothetic 58.9 1.2E+02 0.0025 31.2 11.5 92 200-308 205-322 (396)
144 PRK12381 bifunctional succinyl 58.7 1.9E+02 0.0041 29.5 13.1 109 194-306 91-222 (406)
145 PRK10342 glycerate kinase I; P 58.6 14 0.0003 38.0 4.6 50 263-314 280-329 (381)
146 TIGR02080 O_succ_thio_ly O-suc 58.4 1E+02 0.0023 31.3 11.0 99 200-306 67-171 (382)
147 PRK00414 gmhA phosphoheptose i 58.4 1.5E+02 0.0032 27.2 12.7 35 240-274 128-162 (192)
148 cd01988 Na_H_Antiporter_C The 58.3 1E+02 0.0022 25.1 11.1 60 244-307 63-131 (132)
149 PRK08056 threonine-phosphate d 58.2 1.4E+02 0.0031 29.6 11.9 106 183-306 58-180 (356)
150 PRK12475 thiamine/molybdopteri 58.1 1E+02 0.0022 31.1 10.7 110 188-308 13-148 (338)
151 PRK04311 selenocysteine syntha 57.7 1.3E+02 0.0027 31.9 11.7 117 188-308 131-257 (464)
152 TIGR00858 bioF 8-amino-7-oxono 57.6 1.9E+02 0.0041 28.1 13.0 104 190-306 67-181 (360)
153 TIGR02371 ala_DH_arch alanine 57.2 53 0.0011 32.8 8.5 100 189-291 115-224 (325)
154 PLN02656 tyrosine transaminase 57.2 1.6E+02 0.0035 30.0 12.3 97 197-306 94-207 (409)
155 PRK15118 universal stress glob 57.0 1E+02 0.0023 25.9 9.3 35 267-307 103-137 (144)
156 cd06450 DOPA_deC_like DOPA dec 57.0 2E+02 0.0042 28.1 13.0 101 200-307 58-184 (345)
157 PRK05994 O-acetylhomoserine am 56.7 1.3E+02 0.0028 31.2 11.5 97 201-306 80-183 (427)
158 PRK06836 aspartate aminotransf 56.5 1.4E+02 0.0031 30.1 11.7 55 197-257 94-148 (394)
159 COG0451 WcaG Nucleoside-diphos 56.4 33 0.00073 32.8 6.8 101 203-310 3-116 (314)
160 TIGR03539 DapC_actino succinyl 56.3 1.1E+02 0.0025 30.3 10.8 95 197-306 78-180 (357)
161 TIGR02429 pcaI_scoA_fam 3-oxoa 55.9 85 0.0019 29.8 9.2 98 191-307 10-122 (222)
162 PRK07050 cystathionine beta-ly 55.7 2.2E+02 0.0047 29.1 12.9 104 196-306 77-185 (394)
163 TIGR03538 DapC_gpp succinyldia 55.5 1.5E+02 0.0033 29.8 11.7 94 201-306 92-203 (393)
164 PRK07324 transaminase; Validat 55.2 1E+02 0.0023 30.9 10.3 103 197-306 78-191 (373)
165 PRK09147 succinyldiaminopimela 55.0 1.9E+02 0.0041 29.2 12.3 112 183-306 68-204 (396)
166 PRK07049 methionine gamma-lyas 54.6 2E+02 0.0043 29.8 12.5 56 199-258 98-155 (427)
167 PRK07811 cystathionine gamma-s 54.6 1.2E+02 0.0025 31.0 10.7 94 202-307 79-182 (388)
168 TIGR01324 cysta_beta_ly_B cyst 54.6 1.8E+02 0.0039 29.6 12.0 96 200-306 66-170 (377)
169 cd01483 E1_enzyme_family Super 54.6 89 0.0019 26.7 8.5 97 203-309 2-122 (143)
170 PRK14362 Maf-like protein; Pro 54.3 78 0.0017 29.7 8.5 94 202-309 14-116 (207)
171 PLN02242 methionine gamma-lyas 54.2 1.5E+02 0.0032 30.7 11.5 102 194-306 86-198 (418)
172 PLN02855 Bifunctional selenocy 54.0 2.6E+02 0.0056 28.5 13.2 101 200-306 95-208 (424)
173 PRK13527 glutamine amidotransf 53.6 32 0.00068 31.7 5.8 85 226-315 3-91 (200)
174 PRK13143 hisH imidazole glycer 53.5 70 0.0015 29.4 8.1 83 227-315 2-85 (200)
175 PF02595 Gly_kinase: Glycerate 53.4 9.1 0.0002 39.3 2.3 52 261-314 278-329 (377)
176 cd06436 GlcNAc-1-P_transferase 53.2 58 0.0012 29.2 7.4 42 203-244 3-44 (191)
177 PRK05967 cystathionine beta-ly 53.2 1.7E+02 0.0037 30.2 11.6 98 201-306 81-184 (395)
178 PRK06460 hypothetical protein; 53.1 2.2E+02 0.0047 28.9 12.3 96 203-306 64-165 (376)
179 TIGR03609 S_layer_CsaB polysac 53.0 46 0.001 32.3 7.2 81 224-311 27-109 (298)
180 PRK07523 gluconate 5-dehydroge 52.9 62 0.0013 30.2 7.8 108 199-310 9-146 (255)
181 TIGR03537 DapC succinyldiamino 52.8 2.1E+02 0.0046 28.2 12.0 99 197-306 57-174 (350)
182 PF01488 Shikimate_DH: Shikima 52.8 61 0.0013 27.8 7.1 73 199-275 11-83 (135)
183 PRK14101 bifunctional glucokin 52.7 1.6E+02 0.0034 32.3 11.8 83 190-273 458-564 (638)
184 cd00609 AAT_like Aspartate ami 52.5 85 0.0018 30.2 9.0 103 199-308 59-172 (350)
185 PRK09136 5'-methylthioadenosin 52.5 52 0.0011 31.7 7.2 74 204-309 127-204 (245)
186 PLN02828 formyltetrahydrofolat 52.5 70 0.0015 31.3 8.2 72 202-274 74-154 (268)
187 cd07021 Clp_protease_NfeD_like 52.0 1.2E+02 0.0026 27.7 9.2 83 206-289 12-101 (178)
188 PRK10892 D-arabinose 5-phospha 51.6 2.4E+02 0.0052 27.7 12.2 36 240-275 111-146 (326)
189 PRK06091 membrane protein FdrA 51.6 1.1E+02 0.0024 33.1 10.0 135 165-305 75-221 (555)
190 PRK06767 methionine gamma-lyas 51.5 1.6E+02 0.0035 29.9 11.1 103 196-306 73-181 (386)
191 PRK07765 para-aminobenzoate sy 51.3 83 0.0018 29.4 8.3 82 227-314 2-89 (214)
192 PRK05678 succinyl-CoA syntheta 51.3 87 0.0019 31.0 8.7 103 201-305 67-173 (291)
193 PRK07671 cystathionine beta-ly 51.2 2.2E+02 0.0048 28.8 12.0 92 202-306 68-169 (377)
194 cd00613 GDC-P Glycine cleavage 51.2 2.3E+02 0.0051 28.3 12.2 99 201-306 83-194 (398)
195 cd01748 GATase1_IGP_Synthase T 51.1 52 0.0011 30.0 6.8 73 240-315 12-85 (198)
196 PF01380 SIS: SIS domain SIS d 51.0 94 0.002 25.6 7.9 41 236-276 66-106 (131)
197 TIGR01825 gly_Cac_T_rel pyrido 51.0 1.7E+02 0.0037 29.1 11.2 133 165-306 50-198 (385)
198 PLN02166 dTDP-glucose 4,6-dehy 50.9 57 0.0012 34.0 7.8 109 199-310 119-235 (436)
199 TIGR02356 adenyl_thiF thiazole 50.9 1.7E+02 0.0038 26.9 10.3 109 189-308 11-143 (202)
200 TIGR01019 sucCoAalpha succinyl 50.9 72 0.0016 31.5 8.0 104 201-306 65-172 (286)
201 PRK08247 cystathionine gamma-s 50.6 2.6E+02 0.0055 28.1 12.3 96 202-311 70-175 (366)
202 PF02844 GARS_N: Phosphoribosy 50.5 11 0.00024 31.3 2.0 85 202-305 2-90 (100)
203 PRK05562 precorrin-2 dehydroge 50.4 1.2E+02 0.0026 28.9 9.1 95 199-309 24-118 (223)
204 PRK14361 Maf-like protein; Pro 50.4 85 0.0019 28.9 8.0 89 207-308 5-100 (187)
205 TIGR01822 2am3keto_CoA 2-amino 50.3 1.7E+02 0.0038 29.2 11.1 109 192-306 91-205 (393)
206 PF01408 GFO_IDH_MocA: Oxidore 50.2 1.4E+02 0.003 24.3 9.3 89 202-306 2-91 (120)
207 cd00532 MGS-like MGS-like doma 50.1 1.5E+02 0.0032 24.6 8.8 75 223-310 23-108 (112)
208 PRK04425 Maf-like protein; Rev 49.3 1.3E+02 0.0028 27.9 9.1 96 201-309 6-108 (196)
209 TIGR01963 PHB_DH 3-hydroxybuty 49.1 84 0.0018 29.0 8.0 105 201-308 2-135 (255)
210 PRK03244 argD acetylornithine 49.0 2.9E+02 0.0064 27.7 12.6 114 188-306 89-222 (398)
211 PLN00145 tyrosine/nicotianamin 48.8 1.5E+02 0.0033 30.5 10.6 96 197-306 115-228 (430)
212 COG1091 RfbD dTDP-4-dehydrorha 48.8 68 0.0015 31.6 7.4 96 203-317 3-108 (281)
213 PRK08045 cystathionine gamma-s 48.8 2E+02 0.0044 29.3 11.3 94 201-306 69-172 (386)
214 PRK03369 murD UDP-N-acetylmura 48.6 1.1E+02 0.0023 32.4 9.5 91 197-306 9-99 (488)
215 PRK15062 hydrogenase isoenzyme 48.6 1.3E+02 0.0027 30.9 9.4 103 199-307 82-218 (364)
216 PRK13566 anthranilate synthase 48.4 85 0.0019 35.1 9.0 84 223-313 524-610 (720)
217 PLN02695 GDP-D-mannose-3',5'-e 48.2 91 0.002 31.4 8.6 108 196-310 17-137 (370)
218 cd06433 GT_2_WfgS_like WfgS an 48.1 1.4E+02 0.0031 25.8 9.0 48 202-249 3-51 (202)
219 PRK04056 Maf-like protein; Rev 47.9 1.2E+02 0.0026 27.7 8.6 90 207-309 6-104 (180)
220 PRK06225 aspartate aminotransf 47.9 1.8E+02 0.0039 29.1 10.7 100 198-307 82-196 (380)
221 PRK02478 Maf-like protein; Rev 47.8 1.1E+02 0.0025 28.4 8.5 91 206-309 8-112 (199)
222 PRK04694 Maf-like protein; Rev 47.7 1E+02 0.0022 28.5 8.1 92 207-308 6-106 (190)
223 PRK05557 fabG 3-ketoacyl-(acyl 47.6 1E+02 0.0022 28.1 8.2 76 199-276 4-92 (248)
224 COG0855 Ppk Polyphosphate kina 47.5 84 0.0018 34.5 8.3 51 206-256 380-432 (696)
225 PTZ00187 succinyl-CoA syntheta 47.5 59 0.0013 32.6 6.9 102 200-305 89-197 (317)
226 PLN02896 cinnamyl-alcohol dehy 47.4 1.5E+02 0.0032 29.3 10.0 109 199-310 9-138 (353)
227 PLN02509 cystathionine beta-ly 47.2 2.3E+02 0.005 29.9 11.7 94 201-306 150-252 (464)
228 TIGR01306 GMP_reduct_2 guanosi 46.9 1.5E+02 0.0033 29.8 9.7 53 201-257 110-165 (321)
229 PRK07309 aromatic amino acid a 46.9 2.7E+02 0.0058 28.1 11.8 100 200-306 92-204 (391)
230 PRK07683 aminotransferase A; V 46.9 2.4E+02 0.0051 28.4 11.5 93 201-306 91-199 (387)
231 PRK06108 aspartate aminotransf 46.9 2.3E+02 0.0051 28.1 11.4 96 197-306 82-196 (382)
232 PRK15181 Vi polysaccharide bio 46.8 82 0.0018 31.3 8.0 110 198-308 13-140 (348)
233 PRK07504 O-succinylhomoserine 46.7 2.2E+02 0.0049 29.1 11.3 98 202-306 83-185 (398)
234 PRK08912 hypothetical protein; 46.6 3E+02 0.0066 27.5 12.2 92 201-306 89-197 (387)
235 PRK08063 enoyl-(acyl carrier p 46.5 87 0.0019 28.9 7.7 98 200-299 4-126 (250)
236 PF02142 MGS: MGS-like domain 46.4 27 0.00059 28.0 3.7 77 214-305 4-94 (95)
237 PRK00148 Maf-like protein; Rev 46.2 1.1E+02 0.0023 28.4 8.0 90 207-309 7-104 (194)
238 PRK07550 hypothetical protein; 46.1 2.6E+02 0.0056 28.0 11.6 102 197-306 88-201 (386)
239 PF00072 Response_reg: Respons 45.9 97 0.0021 24.3 7.0 75 228-310 1-80 (112)
240 PRK00032 Maf-like protein; Rev 45.8 1.1E+02 0.0024 28.3 8.0 90 207-309 8-106 (190)
241 PRK07505 hypothetical protein; 45.2 3.4E+02 0.0074 27.4 14.9 113 188-306 95-214 (402)
242 PRK05647 purN phosphoribosylgl 45.1 1.2E+02 0.0026 28.1 8.2 75 202-279 5-93 (200)
243 PRK06939 2-amino-3-ketobutyrat 45.0 1.4E+02 0.003 29.7 9.4 107 187-306 90-209 (397)
244 PF01113 DapB_N: Dihydrodipico 45.0 50 0.0011 28.0 5.3 95 202-310 2-100 (124)
245 TIGR01264 tyr_amTase_E tyrosin 45.0 2.5E+02 0.0055 28.3 11.4 96 197-306 93-206 (401)
246 PRK08361 aspartate aminotransf 44.9 2.9E+02 0.0062 27.8 11.7 55 197-257 91-145 (391)
247 TIGR03458 YgfH_subfam succinat 44.7 1.9E+02 0.004 30.9 10.4 123 190-315 5-161 (485)
248 PRK06176 cystathionine gamma-s 44.5 2.9E+02 0.0063 28.0 11.7 97 201-306 67-169 (380)
249 PRK07681 aspartate aminotransf 44.5 2.3E+02 0.005 28.6 11.0 102 197-306 90-204 (399)
250 cd00757 ThiF_MoeB_HesA_family 44.3 2.3E+02 0.0051 26.4 10.3 109 189-308 11-143 (228)
251 COG2057 AtoA Acyl CoA:acetate/ 44.3 36 0.00078 32.4 4.5 101 184-287 6-119 (225)
252 PRK00726 murG undecaprenyldiph 44.2 2.9E+02 0.0062 27.1 11.4 91 201-308 184-279 (357)
253 COG1086 Predicted nucleoside-d 44.2 1.1E+02 0.0024 33.2 8.6 117 199-317 249-383 (588)
254 PLN02686 cinnamoyl-CoA reducta 44.0 1.8E+02 0.0039 29.3 10.0 109 198-310 51-180 (367)
255 PRK14364 Maf-like protein; Pro 43.6 1.2E+02 0.0025 27.9 7.7 87 208-307 4-98 (181)
256 TIGR01976 am_tr_V_VC1184 cyste 43.5 3.5E+02 0.0075 27.0 15.7 78 224-306 103-191 (397)
257 KOG3349 Predicted glycosyltran 43.5 42 0.00092 30.2 4.5 52 196-251 77-128 (170)
258 PLN02683 pyruvate dehydrogenas 43.5 1.4E+02 0.0031 30.3 9.1 64 241-309 245-320 (356)
259 COG0771 MurD UDP-N-acetylmuram 43.3 93 0.002 32.8 7.8 91 200-305 7-97 (448)
260 PRK00648 Maf-like protein; Rev 43.2 1.4E+02 0.003 27.6 8.3 91 206-309 8-108 (191)
261 PLN02187 rooty/superroot1 43.1 2.8E+02 0.0061 29.0 11.6 103 197-306 129-242 (462)
262 PRK00451 glycine dehydrogenase 43.0 3.9E+02 0.0084 27.4 13.3 98 201-306 131-238 (447)
263 PRK07239 bifunctional uroporph 42.9 67 0.0014 32.6 6.7 56 195-258 195-261 (381)
264 PRK00421 murC UDP-N-acetylmura 42.9 96 0.0021 32.3 8.0 68 199-275 6-74 (461)
265 PRK06348 aspartate aminotransf 42.9 2.9E+02 0.0063 27.7 11.4 96 197-306 87-200 (384)
266 TIGR01737 FGAM_synth_I phospho 42.8 93 0.002 29.3 7.3 72 240-313 15-90 (227)
267 cd02525 Succinoglycan_BP_ExoA 42.4 97 0.0021 28.2 7.3 56 202-257 5-63 (249)
268 COG1648 CysG Siroheme synthase 42.4 94 0.002 29.2 7.1 94 199-308 11-104 (210)
269 PRK12452 cardiolipin synthetas 42.3 1.4E+02 0.0029 32.0 9.1 51 207-258 368-423 (509)
270 COG1298 FlhA Flagellar biosynt 42.2 5.2E+02 0.011 28.7 13.7 175 21-267 482-664 (696)
271 TIGR01279 DPOR_bchN light-inde 42.2 3.3E+02 0.0072 28.0 11.8 73 226-307 154-227 (407)
272 TIGR03301 PhnW-AepZ 2-aminoeth 42.2 3.3E+02 0.0072 26.4 13.1 98 202-307 53-161 (355)
273 PRK08776 cystathionine gamma-s 42.0 4E+02 0.0087 27.4 12.3 99 201-306 77-180 (405)
274 TIGR01303 IMP_DH_rel_1 IMP deh 41.9 1.1E+02 0.0024 32.4 8.3 63 188-255 225-292 (475)
275 TIGR00639 PurN phosphoribosylg 41.8 1.7E+02 0.0036 27.0 8.5 70 202-274 4-86 (190)
276 PRK08960 hypothetical protein; 41.8 3.3E+02 0.0072 27.3 11.6 110 183-306 72-203 (387)
277 PRK13181 hisH imidazole glycer 41.5 46 0.00099 30.5 4.8 74 240-316 13-87 (199)
278 PRK00048 dihydrodipicolinate r 41.4 1.1E+02 0.0023 29.4 7.6 87 202-307 3-90 (257)
279 PRK00884 Maf-like protein; Rev 41.3 1.5E+02 0.0033 27.5 8.2 90 207-309 8-105 (194)
280 PRK06756 flavodoxin; Provision 41.3 94 0.002 26.8 6.6 67 241-308 21-90 (148)
281 COG0373 HemA Glutamyl-tRNA red 41.3 2.1E+02 0.0045 29.9 10.0 106 165-277 135-248 (414)
282 PRK10481 hypothetical protein; 40.8 1.2E+02 0.0026 28.9 7.5 89 209-306 116-211 (224)
283 PF06258 Mito_fiss_Elm1: Mitoc 40.8 2.2E+02 0.0048 28.3 9.9 84 212-311 170-259 (311)
284 PF03709 OKR_DC_1_N: Orn/Lys/A 40.7 50 0.0011 27.6 4.6 67 240-311 7-77 (115)
285 PRK06719 precorrin-2 dehydroge 40.7 1.2E+02 0.0026 26.9 7.2 90 199-308 12-101 (157)
286 TIGR00172 maf MAF protein. Thi 40.7 1.9E+02 0.004 26.6 8.6 94 202-309 5-106 (183)
287 cd01491 Ube1_repeat1 Ubiquitin 40.6 2E+02 0.0044 28.3 9.4 108 190-308 10-137 (286)
288 TIGR03705 poly_P_kin polyphosp 40.5 69 0.0015 35.5 6.7 52 206-257 367-420 (672)
289 PRK13152 hisH imidazole glycer 40.4 50 0.0011 30.4 4.9 72 240-315 13-87 (201)
290 PRK14367 Maf-like protein; Pro 40.4 1.5E+02 0.0032 27.7 8.1 93 207-309 8-112 (202)
291 TIGR01977 am_tr_V_EF2568 cyste 40.3 3.7E+02 0.0081 26.5 14.1 99 201-306 64-172 (376)
292 PRK02936 argD acetylornithine 40.2 3.9E+02 0.0084 26.6 13.2 102 200-306 87-206 (377)
293 PLN02331 phosphoribosylglycina 40.0 1.7E+02 0.0037 27.3 8.5 69 202-274 3-85 (207)
294 PRK02705 murD UDP-N-acetylmura 40.0 2.1E+02 0.0045 29.6 10.0 66 206-275 8-76 (459)
295 PRK11892 pyruvate dehydrogenas 40.0 2.1E+02 0.0047 30.2 10.0 70 239-313 355-436 (464)
296 PRK05957 aspartate aminotransf 39.9 3.2E+02 0.007 27.5 11.2 93 200-306 90-198 (389)
297 PRK09191 two-component respons 39.8 2.6E+02 0.0056 25.9 9.8 93 210-309 119-218 (261)
298 TIGR01142 purT phosphoribosylg 39.8 90 0.002 31.3 7.1 71 202-279 1-74 (380)
299 cd05013 SIS_RpiR RpiR-like pro 39.7 2.1E+02 0.0046 23.4 8.5 37 238-274 75-111 (139)
300 PF13090 PP_kinase_C: Polyphos 39.5 23 0.00051 35.8 2.7 52 206-257 46-99 (352)
301 PRK11104 hemG protoporphyrinog 39.5 71 0.0015 28.9 5.7 66 241-309 20-86 (177)
302 TIGR01133 murG undecaprenyldip 39.4 2.6E+02 0.0056 27.1 10.2 53 241-307 223-276 (348)
303 PRK15005 universal stress prot 39.2 96 0.0021 26.0 6.2 36 267-307 107-143 (144)
304 PRK05653 fabG 3-ketoacyl-(acyl 39.2 1.7E+02 0.0037 26.5 8.4 73 200-275 5-90 (246)
305 PF00670 AdoHcyase_NAD: S-aden 39.1 2.2E+02 0.0047 25.8 8.6 88 192-291 15-112 (162)
306 PRK14368 Maf-like protein; Pro 38.9 2E+02 0.0044 26.6 8.6 95 201-309 6-108 (193)
307 COG1587 HemD Uroporphyrinogen- 38.9 52 0.0011 31.3 4.9 54 200-260 175-232 (248)
308 PF13241 NAD_binding_7: Putati 38.9 38 0.00082 27.6 3.5 87 199-308 6-92 (103)
309 PTZ00182 3-methyl-2-oxobutanat 38.8 2E+02 0.0043 29.2 9.3 69 242-315 251-331 (355)
310 PRK12745 3-ketoacyl-(acyl-carr 38.7 1.9E+02 0.0042 26.6 8.8 74 201-275 3-88 (256)
311 TIGR00732 dprA DNA protecting 38.7 3.4E+02 0.0074 25.5 10.5 100 199-307 73-187 (220)
312 PLN02822 serine palmitoyltrans 38.7 4.9E+02 0.011 27.4 12.6 133 165-312 126-285 (481)
313 PRK08666 5'-methylthioadenosin 38.7 1.4E+02 0.0031 28.7 7.9 73 205-309 128-204 (261)
314 KOG1549 Cysteine desulfurase N 38.6 3.5E+02 0.0075 28.4 11.0 118 182-306 87-216 (428)
315 PRK14719 bifunctional RNAse/5- 38.5 3.6E+02 0.0079 27.5 11.1 90 170-264 5-109 (360)
316 PRK12342 hypothetical protein; 38.3 2.2E+02 0.0048 27.6 9.1 93 202-314 55-149 (254)
317 TIGR00075 hypD hydrogenase exp 38.2 1.9E+02 0.0041 29.7 8.8 48 257-307 177-224 (369)
318 PF00582 Usp: Universal stress 38.0 54 0.0012 26.4 4.3 38 267-307 102-139 (140)
319 TIGR01814 kynureninase kynuren 38.0 3.9E+02 0.0085 27.0 11.5 108 195-306 80-206 (406)
320 cd05212 NAD_bind_m-THF_DH_Cycl 37.9 1.8E+02 0.0039 25.5 7.7 53 199-275 27-79 (140)
321 COG1104 NifS Cysteine sulfinat 37.7 2.7E+02 0.006 28.7 10.0 112 182-306 46-176 (386)
322 TIGR01265 tyr_nico_aTase tyros 37.7 2.8E+02 0.006 28.1 10.4 94 199-306 96-207 (403)
323 cd00555 Maf Nucleotide binding 37.6 1.5E+02 0.0032 27.1 7.4 90 207-309 5-103 (180)
324 PF08659 KR: KR domain; Inter 37.5 3E+02 0.0065 24.5 9.7 106 203-310 3-136 (181)
325 COG0424 Maf Nucleotide-binding 37.5 1.1E+02 0.0024 28.5 6.5 89 206-306 8-104 (193)
326 PF08032 SpoU_sub_bind: RNA 2' 37.4 1.2E+02 0.0027 22.7 6.0 51 215-265 7-58 (76)
327 PF14359 DUF4406: Domain of un 37.4 33 0.00072 27.8 2.8 65 241-305 20-90 (92)
328 PRK06701 short chain dehydroge 37.3 3.5E+02 0.0076 26.0 10.6 99 200-299 46-169 (290)
329 TIGR01521 FruBisAldo_II_B fruc 37.2 1.4E+02 0.003 30.4 7.8 97 207-306 24-139 (347)
330 cd01973 Nitrogenase_VFe_beta_l 37.1 5E+02 0.011 27.3 12.3 117 179-308 285-406 (454)
331 PRK13111 trpA tryptophan synth 37.0 4E+02 0.0086 25.8 11.7 104 202-307 93-206 (258)
332 cd06442 DPM1_like DPM1_like re 37.0 1.2E+02 0.0026 27.2 6.9 8 252-259 80-87 (224)
333 PRK09134 short chain dehydroge 36.9 1.2E+02 0.0026 28.2 7.1 99 199-299 8-131 (258)
334 TIGR00853 pts-lac PTS system, 36.8 85 0.0018 25.5 5.2 56 244-308 25-82 (95)
335 PRK02472 murD UDP-N-acetylmura 36.8 2.7E+02 0.0059 28.6 10.2 71 200-275 5-76 (447)
336 PRK07178 pyruvate carboxylase 36.8 75 0.0016 33.4 6.1 34 201-236 3-36 (472)
337 COG0520 csdA Selenocysteine ly 36.7 5E+02 0.011 26.8 13.4 113 181-306 67-197 (405)
338 PRK10537 voltage-gated potassi 36.5 4.6E+02 0.0099 27.1 11.6 92 200-310 240-338 (393)
339 PRK05749 3-deoxy-D-manno-octul 36.5 2.3E+02 0.005 28.7 9.6 75 223-307 260-350 (425)
340 PRK01441 Maf-like protein; Rev 36.4 2.4E+02 0.0051 26.4 8.8 95 202-307 7-113 (207)
341 PRK11337 DNA-binding transcrip 36.4 1.1E+02 0.0024 29.6 6.9 77 227-310 142-223 (292)
342 COG0074 SucD Succinyl-CoA synt 36.4 1.5E+02 0.0033 29.3 7.5 90 201-292 67-158 (293)
343 PRK14365 Maf-like protein; Pro 36.4 1.8E+02 0.0039 27.0 7.9 91 207-309 8-106 (197)
344 PRK03803 murD UDP-N-acetylmura 36.2 1.6E+02 0.0035 30.4 8.5 75 198-280 4-80 (448)
345 TIGR01214 rmlD dTDP-4-dehydror 36.2 1.4E+02 0.003 28.2 7.5 26 285-310 76-101 (287)
346 cd03821 GT1_Bme6_like This fam 36.2 3.2E+02 0.007 25.7 10.1 96 201-306 204-310 (375)
347 PRK07792 fabG 3-ketoacyl-(acyl 36.2 1.4E+02 0.0031 29.0 7.7 96 199-297 11-131 (306)
348 PRK12939 short chain dehydroge 36.2 1.2E+02 0.0026 27.8 6.8 53 200-255 7-60 (250)
349 PRK12655 fructose-6-phosphate 36.1 2.8E+02 0.0062 26.2 9.3 47 209-258 62-111 (220)
350 COG2873 MET17 O-acetylhomoseri 36.1 1.3E+02 0.0027 31.1 7.2 88 212-306 90-182 (426)
351 PLN02427 UDP-apiose/xylose syn 36.1 1.5E+02 0.0031 29.9 7.9 104 201-309 15-136 (386)
352 PLN02662 cinnamyl-alcohol dehy 36.0 2.9E+02 0.0062 26.6 9.8 108 199-310 3-127 (322)
353 PF06026 Rib_5-P_isom_A: Ribos 36.0 62 0.0014 29.5 4.7 72 240-317 8-80 (173)
354 PRK13789 phosphoribosylamine-- 36.0 50 0.0011 34.3 4.6 75 201-281 5-82 (426)
355 PRK06895 putative anthranilate 35.9 1.9E+02 0.0042 26.1 8.0 78 227-312 3-83 (190)
356 PRK05973 replicative DNA helic 35.9 2E+02 0.0043 27.6 8.3 113 197-313 61-195 (237)
357 PRK15418 transcriptional regul 35.9 2.9E+02 0.0063 27.5 9.9 88 190-280 106-214 (318)
358 PF04321 RmlD_sub_bind: RmlD s 35.9 76 0.0016 30.8 5.6 97 201-316 1-108 (286)
359 cd00956 Transaldolase_FSA Tran 35.8 2.5E+02 0.0055 26.2 8.9 96 209-312 60-166 (211)
360 PRK00078 Maf-like protein; Rev 35.8 2.1E+02 0.0045 26.4 8.2 93 207-309 7-107 (192)
361 PRK13399 fructose-1,6-bisphosp 35.7 1.4E+02 0.003 30.4 7.5 97 207-306 26-141 (347)
362 PRK09148 aminotransferase; Val 35.6 2.9E+02 0.0064 28.0 10.2 102 197-306 89-203 (405)
363 cd00138 PLDc Phospholipase D. 35.5 2E+02 0.0044 25.0 7.9 51 209-259 52-107 (176)
364 PRK05234 mgsA methylglyoxal sy 35.5 2.9E+02 0.0064 24.2 8.7 85 212-307 19-112 (142)
365 CHL00188 hisH imidazole glycer 35.5 1.1E+02 0.0024 28.6 6.4 67 240-315 15-88 (210)
366 cd06502 TA_like Low-specificit 35.5 3.5E+02 0.0076 26.1 10.4 107 194-306 42-164 (338)
367 PRK00414 gmhA phosphoheptose i 35.4 1.8E+02 0.0038 26.7 7.7 22 289-310 126-147 (192)
368 TIGR01777 yfcH conserved hypot 35.4 96 0.0021 29.2 6.2 99 203-309 1-111 (292)
369 PF06574 FAD_syn: FAD syntheta 35.3 2.8E+02 0.006 24.6 8.7 104 201-308 6-144 (157)
370 PF04392 ABC_sub_bind: ABC tra 35.2 30 0.00066 33.6 2.7 38 265-309 182-219 (294)
371 PRK09196 fructose-1,6-bisphosp 35.1 1.5E+02 0.0033 30.1 7.6 97 207-306 26-141 (347)
372 PRK14012 cysteine desulfurase; 34.9 4.9E+02 0.011 26.2 15.7 101 201-306 68-179 (404)
373 PRK08175 aminotransferase; Val 34.9 1.2E+02 0.0027 30.6 7.2 92 201-306 93-202 (395)
374 COG3844 Kynureninase [Amino ac 34.7 5.2E+02 0.011 26.5 13.1 88 187-274 79-172 (407)
375 PRK15029 arginine decarboxylas 34.7 1.7E+02 0.0037 33.0 8.7 89 227-318 2-102 (755)
376 PRK07340 ornithine cyclodeamin 34.6 1.8E+02 0.004 28.6 8.2 82 189-274 112-195 (304)
377 PRK10637 cysG siroheme synthas 34.4 1.6E+02 0.0034 31.0 8.0 94 199-308 11-104 (457)
378 PRK13011 formyltetrahydrofolat 34.4 1.4E+02 0.0029 29.5 7.1 50 202-257 93-144 (286)
379 PRK01278 argD acetylornithine 34.3 4.9E+02 0.011 26.1 11.6 108 195-306 84-214 (389)
380 PRK13525 glutamine amidotransf 34.3 92 0.002 28.4 5.6 76 226-315 4-86 (189)
381 cd01743 GATase1_Anthranilate_S 34.3 96 0.0021 27.8 5.7 69 240-314 12-84 (184)
382 PRK09987 dTDP-4-dehydrorhamnos 34.2 1.4E+02 0.003 28.9 7.2 30 284-313 79-108 (299)
383 PRK01747 mnmC bifunctional tRN 34.2 1.1E+02 0.0024 33.5 7.2 32 189-220 188-219 (662)
384 PRK00942 acetylglutamate kinas 34.0 4.1E+02 0.0088 25.7 10.4 106 201-307 57-201 (283)
385 PRK12743 oxidoreductase; Provi 33.9 1.2E+02 0.0027 28.2 6.6 75 200-275 2-88 (256)
386 PRK04690 murD UDP-N-acetylmura 33.9 2.8E+02 0.006 29.1 9.8 91 200-306 8-98 (468)
387 PRK09135 pteridine reductase; 33.9 88 0.0019 28.6 5.5 99 199-298 5-128 (249)
388 COG1587 HemD Uroporphyrinogen- 33.8 1.9E+02 0.0041 27.4 7.9 100 201-315 52-159 (248)
389 cd07015 Clp_protease_NfeD Nodu 33.8 3.1E+02 0.0067 24.9 8.8 74 206-280 12-95 (172)
390 PRK02141 Maf-like protein; Rev 33.8 2.2E+02 0.0049 26.6 8.1 97 202-309 11-115 (207)
391 cd01979 Pchlide_reductase_N Pc 33.6 1.2E+02 0.0025 31.2 6.8 73 226-307 156-229 (396)
392 PRK05937 8-amino-7-oxononanoat 33.6 3.3E+02 0.0071 27.2 10.0 35 270-306 144-178 (370)
393 PRK07454 short chain dehydroge 33.6 2.5E+02 0.0054 25.7 8.6 74 199-275 5-91 (241)
394 PRK01372 ddl D-alanine--D-alan 33.5 90 0.0019 30.2 5.7 51 227-277 6-66 (304)
395 PRK07269 cystathionine gamma-s 33.5 4.3E+02 0.0094 26.6 10.9 93 201-306 71-171 (364)
396 TIGR00215 lpxB lipid-A-disacch 33.5 5.2E+02 0.011 26.1 11.6 47 250-315 251-297 (385)
397 cd01972 Nitrogenase_VnfE_like 33.5 5.6E+02 0.012 26.4 12.2 118 175-308 269-400 (426)
398 PRK11658 UDP-4-amino-4-deoxy-L 33.2 5.2E+02 0.011 26.0 11.9 102 194-306 43-153 (379)
399 COG3980 spsG Spore coat polysa 33.1 2.2E+02 0.0047 28.4 8.0 72 200-275 159-235 (318)
400 PRK11908 NAD-dependent epimera 32.8 1.9E+02 0.0041 28.5 8.0 104 202-310 3-119 (347)
401 PRK08202 purine nucleoside pho 32.8 1.9E+02 0.0041 28.1 7.8 22 288-309 211-232 (272)
402 PF05673 DUF815: Protein of un 32.8 2.6E+02 0.0055 27.2 8.4 58 200-259 53-114 (249)
403 PRK05784 phosphoribosylamine-- 32.7 62 0.0013 34.4 4.7 77 202-279 2-81 (486)
404 PRK08762 molybdopterin biosynt 32.7 3.5E+02 0.0076 27.4 10.1 109 189-308 125-257 (376)
405 PRK14175 bifunctional 5,10-met 32.6 1E+02 0.0022 30.4 5.9 53 199-275 157-209 (286)
406 cd06578 HemD Uroporphyrinogen- 32.4 1.7E+02 0.0037 26.6 7.2 51 203-260 176-230 (239)
407 TIGR01694 MTAP 5'-deoxy-5'-met 32.4 2.5E+02 0.0054 26.6 8.5 21 288-308 181-201 (241)
408 PRK07806 short chain dehydroge 32.4 1.5E+02 0.0033 27.3 6.9 109 199-309 5-135 (248)
409 PRK05865 hypothetical protein; 32.3 1.3E+02 0.0028 34.5 7.3 99 202-310 2-103 (854)
410 PRK11557 putative DNA-binding 32.3 2.5E+02 0.0054 26.8 8.6 77 227-310 130-211 (278)
411 cd03466 Nitrogenase_NifN_2 Nit 32.2 5.9E+02 0.013 26.3 13.3 96 199-308 299-397 (429)
412 TIGR03812 tyr_de_CO2_Arch tyro 32.2 5E+02 0.011 25.5 12.3 101 200-307 77-189 (373)
413 PF01118 Semialdhyde_dh: Semia 32.2 1.1E+02 0.0024 25.5 5.3 105 203-318 2-107 (121)
414 COG0707 MurG UDP-N-acetylgluco 32.1 1.7E+02 0.0037 29.7 7.6 93 199-308 182-279 (357)
415 TIGR01139 cysK cysteine syntha 31.9 68 0.0015 31.3 4.6 59 197-259 54-112 (298)
416 cd05013 SIS_RpiR RpiR-like pro 31.8 2.9E+02 0.0062 22.6 8.1 64 240-310 29-96 (139)
417 COG1058 CinA Predicted nucleot 31.8 1.3E+02 0.0029 29.2 6.3 70 239-315 23-101 (255)
418 PRK12937 short chain dehydroge 31.6 2.7E+02 0.0059 25.3 8.5 99 199-299 4-127 (245)
419 COG1603 RPP1 RNase P/RNase MRP 31.6 3.3E+02 0.0072 26.0 8.9 113 192-337 68-186 (229)
420 PF13460 NAD_binding_10: NADH( 31.6 1.6E+02 0.0035 25.7 6.6 99 203-315 1-103 (183)
421 TIGR01426 MGT glycosyltransfer 31.6 1.3E+02 0.0029 30.1 6.8 32 274-311 92-123 (392)
422 PRK07589 ornithine cyclodeamin 31.6 2.9E+02 0.0063 28.0 9.1 100 190-292 117-228 (346)
423 PRK13141 hisH imidazole glycer 31.5 2.2E+02 0.0048 26.0 7.7 73 240-316 13-87 (205)
424 PRK14571 D-alanyl-alanine synt 31.5 1.7E+02 0.0037 28.4 7.4 42 238-279 20-65 (299)
425 TIGR02113 coaC_strep phosphopa 31.5 89 0.0019 28.5 4.9 101 203-307 4-118 (177)
426 PLN00175 aminotransferase fami 31.4 5.8E+02 0.013 26.0 12.1 92 201-306 117-225 (413)
427 PRK07904 short chain dehydroge 31.4 3.2E+02 0.007 25.5 9.1 79 197-275 5-95 (253)
428 cd05017 SIS_PGI_PMI_1 The memb 31.3 1.3E+02 0.0029 24.9 5.7 58 196-260 40-100 (119)
429 PRK08618 ornithine cyclodeamin 31.3 3.6E+02 0.0078 26.7 9.7 81 191-275 116-200 (325)
430 cd05014 SIS_Kpsf KpsF-like pro 31.2 87 0.0019 25.9 4.6 43 233-275 57-99 (128)
431 cd03786 GT1_UDP-GlcNAc_2-Epime 31.1 3.6E+02 0.0077 26.3 9.7 81 212-309 217-304 (363)
432 cd04252 AAK_NAGK-fArgBP AAK_NA 31.1 2.4E+02 0.0053 26.8 8.2 108 201-309 30-172 (248)
433 cd04187 DPM1_like_bac Bacteria 31.0 2.2E+02 0.0048 24.6 7.4 47 202-248 2-52 (181)
434 cd06452 SepCysS Sep-tRNA:Cys-t 30.8 5.3E+02 0.012 25.4 12.1 94 200-307 60-175 (361)
435 PRK12429 3-hydroxybutyrate deh 30.7 3.2E+02 0.007 25.0 8.9 73 200-275 4-89 (258)
436 PRK08674 bifunctional phosphog 30.5 5.1E+02 0.011 25.7 10.7 50 171-220 4-56 (337)
437 PRK00207 sulfur transfer compl 30.5 2.2E+02 0.0049 24.3 7.1 73 228-312 4-83 (128)
438 PRK02627 acetylornithine amino 30.4 5.6E+02 0.012 25.5 12.5 115 188-306 85-221 (396)
439 PRK05942 aspartate aminotransf 30.4 4.8E+02 0.01 26.2 10.7 96 201-306 99-208 (394)
440 PRK06718 precorrin-2 dehydroge 30.4 2.4E+02 0.0052 26.0 7.8 99 199-315 9-107 (202)
441 cd01423 MGS_CPS_I_III Methylgl 30.4 69 0.0015 26.6 3.8 66 224-305 25-105 (116)
442 PRK12414 putative aminotransfe 30.3 5.6E+02 0.012 25.6 11.1 97 200-306 91-200 (384)
443 PRK00758 GMP synthase subunit 30.3 1.9E+02 0.0041 26.0 6.9 78 228-314 2-80 (184)
444 PRK08213 gluconate 5-dehydroge 30.1 2.2E+02 0.0048 26.4 7.7 109 199-310 11-149 (259)
445 PRK13394 3-hydroxybutyrate deh 30.1 2.8E+02 0.006 25.6 8.3 54 199-255 6-60 (262)
446 PRK06114 short chain dehydroge 30.1 4.1E+02 0.0089 24.5 9.5 76 199-275 7-94 (254)
447 PRK05855 short chain dehydroge 30.0 3E+02 0.0065 28.8 9.4 96 199-297 314-434 (582)
448 COG0212 5-formyltetrahydrofola 30.0 3.7E+02 0.008 24.6 8.8 153 165-322 6-174 (191)
449 PRK06015 keto-hydroxyglutarate 30.0 2E+02 0.0044 26.8 7.1 77 230-306 9-102 (201)
450 TIGR01699 XAPA xanthosine phos 29.9 1.8E+02 0.0039 28.1 6.9 75 204-310 134-211 (248)
451 PRK05597 molybdopterin biosynt 29.8 5.3E+02 0.011 26.0 10.7 108 189-307 18-149 (355)
452 cd01080 NAD_bind_m-THF_DH_Cycl 29.8 3E+02 0.0065 24.7 8.1 52 199-275 43-95 (168)
453 PLN02512 acetylglutamate kinas 29.8 5.3E+02 0.012 25.5 10.6 108 201-309 81-228 (309)
454 PRK06425 histidinol-phosphate 29.7 3.2E+02 0.007 26.8 9.1 94 199-306 57-160 (332)
455 PRK00950 histidinol-phosphate 29.7 3.5E+02 0.0076 26.6 9.4 52 200-257 87-139 (361)
456 COG5016 Pyruvate/oxaloacetate 29.6 2.9E+02 0.0063 28.9 8.5 42 182-223 68-111 (472)
457 PRK04663 murD UDP-N-acetylmura 29.5 3.2E+02 0.0069 28.2 9.3 88 201-305 8-96 (438)
458 PF00070 Pyr_redox: Pyridine n 29.5 2.3E+02 0.005 21.4 6.4 52 203-254 2-58 (80)
459 PRK09212 pyruvate dehydrogenas 29.5 4E+02 0.0087 26.6 9.7 65 241-310 218-294 (327)
460 PRK15482 transcriptional regul 29.5 2.3E+02 0.0051 27.3 7.9 77 227-310 137-218 (285)
461 PRK08125 bifunctional UDP-gluc 29.4 2.8E+02 0.006 30.5 9.2 109 198-310 313-433 (660)
462 PRK13146 hisH imidazole glycer 29.4 1.4E+02 0.0031 27.6 6.1 84 227-315 3-91 (209)
463 KOG1430 C-3 sterol dehydrogena 29.4 4.2E+02 0.0092 27.1 9.8 112 199-312 3-128 (361)
464 PRK02948 cysteine desulfurase; 29.3 5.7E+02 0.012 25.3 14.8 103 199-306 60-173 (381)
465 cd04179 DPM_DPG-synthase_like 29.3 2E+02 0.0043 24.8 6.8 48 202-249 2-52 (185)
466 PRK09195 gatY tagatose-bisphos 29.3 2.4E+02 0.0051 27.9 7.8 97 207-306 26-133 (284)
467 PRK08636 aspartate aminotransf 29.1 6.1E+02 0.013 25.6 12.0 99 201-306 97-213 (403)
468 PF02602 HEM4: Uroporphyrinoge 29.1 71 0.0015 29.4 4.0 51 202-259 170-223 (231)
469 TIGR03403 nifS_epsilon cystein 29.1 5.8E+02 0.013 25.3 13.0 102 199-306 60-175 (382)
470 PRK09082 methionine aminotrans 29.1 5.9E+02 0.013 25.4 11.3 92 201-306 93-201 (386)
471 TIGR00274 N-acetylmuramic acid 29.1 5.7E+02 0.012 25.2 11.8 54 240-295 143-199 (291)
472 PRK12828 short chain dehydroge 29.1 2.6E+02 0.0056 25.2 7.8 52 199-253 6-58 (239)
473 PRK09411 carbamate kinase; Rev 29.1 1.8E+02 0.0039 29.0 6.9 58 194-252 37-98 (297)
474 PRK12771 putative glutamate sy 29.0 5.1E+02 0.011 27.7 11.1 77 197-275 134-230 (564)
475 cd01974 Nitrogenase_MoFe_beta 29.0 6.7E+02 0.014 26.0 13.0 96 199-308 302-402 (435)
476 TIGR03215 ac_ald_DH_ac acetald 29.0 5.7E+02 0.012 25.2 10.6 94 203-311 4-98 (285)
477 COG1066 Sms Predicted ATP-depe 28.9 4.5E+02 0.0097 27.7 9.8 113 199-313 92-222 (456)
478 PRK09288 purT phosphoribosylgl 28.8 1.5E+02 0.0032 29.9 6.6 72 200-278 12-86 (395)
479 cd00755 YgdL_like Family of ac 28.8 3.7E+02 0.008 25.5 8.9 109 192-311 4-137 (231)
480 cd05005 SIS_PHI Hexulose-6-pho 28.7 1.9E+02 0.0041 25.8 6.6 76 227-310 35-111 (179)
481 TIGR03466 HpnA hopanoid-associ 28.6 2.6E+02 0.0056 26.8 8.0 103 202-310 2-113 (328)
482 COG0569 TrkA K+ transport syst 28.6 2.6E+02 0.0056 26.3 7.7 69 239-307 12-98 (225)
483 cd02522 GT_2_like_a GT_2_like_ 28.4 4.2E+02 0.0091 23.5 9.3 40 203-242 5-45 (221)
484 PRK05749 3-deoxy-D-manno-octul 28.4 4.1E+02 0.009 26.9 9.9 98 199-309 49-155 (425)
485 PRK15456 universal stress prot 28.3 1.8E+02 0.0038 24.5 6.1 36 267-307 105-141 (142)
486 PRK10076 pyruvate formate lyas 28.2 1.1E+02 0.0023 28.8 5.0 67 211-278 20-100 (213)
487 PRK14363 Maf-like protein; Pro 28.2 3.4E+02 0.0075 25.3 8.3 91 207-307 7-102 (204)
488 PRK07313 phosphopantothenoylcy 28.2 88 0.0019 28.6 4.3 31 361-391 143-173 (182)
489 COG2984 ABC-type uncharacteriz 28.1 4.8E+02 0.01 26.3 9.7 61 240-307 178-245 (322)
490 PRK07666 fabG 3-ketoacyl-(acyl 28.1 2.6E+02 0.0056 25.5 7.7 73 200-275 7-92 (239)
491 TIGR00036 dapB dihydrodipicoli 28.0 4.1E+02 0.0089 25.6 9.2 96 202-310 3-101 (266)
492 PLN02986 cinnamyl-alcohol dehy 28.0 2.9E+02 0.0063 26.7 8.3 109 199-310 4-128 (322)
493 KOG0822 Protein kinase inhibit 28.0 2.5E+02 0.0055 30.4 8.0 73 187-259 350-429 (649)
494 PRK00234 Maf-like protein; Rev 27.8 3.6E+02 0.0077 24.9 8.3 90 206-308 7-104 (192)
495 COG2121 Uncharacterized protei 27.7 5.3E+02 0.011 24.4 11.3 111 196-315 42-160 (214)
496 PLN00198 anthocyanidin reducta 27.6 2.8E+02 0.006 27.1 8.2 109 200-310 9-131 (338)
497 PRK12656 fructose-6-phosphate 27.6 4.3E+02 0.0093 25.1 9.0 46 210-258 64-113 (222)
498 TIGR02932 vnfK_nitrog V-contai 27.5 7.4E+02 0.016 26.0 13.4 119 178-307 288-408 (457)
499 PF14468 DUF4427: Protein of u 27.5 3.1E+02 0.0067 23.7 7.0 88 168-257 6-106 (132)
500 TIGR01179 galE UDP-glucose-4-e 27.3 2E+02 0.0043 27.4 6.9 105 203-310 2-121 (328)
No 1
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-85 Score=617.92 Aligned_cols=347 Identities=47% Similarity=0.739 Sum_probs=314.7
Q ss_pred hHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q 045642 4 IQALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHI 83 (406)
Q Consensus 4 ~~~~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~ 83 (406)
.+..+.+|+.+||+++++||+++|++|+++||++|.+ .+|+++++|++.||..|+.|.+|+|+|+++||++||||++
T Consensus 7 ~~~~i~~fI~~lk~r~v~gS~aiA~eTl~llr~iIs~---~rw~~~n~Li~~vr~~g~~L~~A~psE~~~gNiirrIlkl 83 (353)
T KOG1465|consen 7 TEDEISEFIAALKKRLVRGSYAIAIETLNLLRQIISR---ERWSTANDLIESVRDVGKKLHAAQPSELSCGNIIRRILKL 83 (353)
T ss_pred hhhHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHh---hCcccHHHHHHHHHHHHHHhhhcCCchhhhhHHHHHHHHH
Confidence 4567999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHhhccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccch
Q 045642 84 IREEDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKS 163 (406)
Q Consensus 84 Iree~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~ 163 (406)
||||+.+.+.+. .+| ...+..||++||+..+.....+.. ....
T Consensus 84 iReE~~~l~~~~--------~s~-------------------~s~~~~Sl~kLl~~~~e~~~~~~~----------S~~~ 126 (353)
T KOG1465|consen 84 IREEVLELTGGA--------TSD-------------------ESSPSESLHKLLQSTEESHTNKKL----------SSAD 126 (353)
T ss_pred HHHHHHHHhccC--------CCC-------------------CCchHHHHHHHHhCCCcccccccc----------cccc
Confidence 999987655431 011 112456999999986543211111 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHH
Q 045642 164 AKKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILA 243 (406)
Q Consensus 164 ~~~~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a 243 (406)
..++|+.++++|+++++|++.++++|+.+|.++|+++++|||+|.|+||++||++|.++||+|+|||+|+.|.++|+.||
T Consensus 127 ~~~lr~~~i~~I~eli~Eie~~~E~Ia~Qa~ehihsnEviLT~g~SrTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~~A 206 (353)
T KOG1465|consen 127 AKKLRKDLIEGIKELITEIEGSRENIAVQAIEHIHSNEVILTLGSSRTVENFLKHAAKKGRKFRVIVAEGAPNNQGHELA 206 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhccCceEEecCccHHHHHHHHHHHhccCceEEEEeecCCcccchHhh
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccccCCCCccc
Q 045642 244 KELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEV 323 (406)
Q Consensus 244 ~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~~~d~~~ 323 (406)
+.|+++||++|+|+|++++++|+||+|||+|+++|++|||+...+|++++|++||+|.+|||||++.||+||.||.+++.
T Consensus 207 k~la~~giettVI~daaVfA~MsrVnKVIigt~avl~NGgl~~~~G~~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds 286 (353)
T KOG1465|consen 207 KPLAQAGIETTVIPDAAVFAMMSRVNKVIIGTHAVLANGGLRAPSGVHTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDS 286 (353)
T ss_pred HHHHHcCCeeEEeccHHHHHHhhhcceEEEEeeeEecCCCeeccchHHHHHHHHHhcCCcEEEecchhhcCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHHHHHHHhcCCCCCCC
Q 045642 324 LLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSSEDLPP 400 (406)
Q Consensus 324 i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~~ll~e~y~~~d~~l 400 (406)
++++++|+++++|.+. + ....+++.||+|||+||||||+|||+.|.+.||+|||++.||||++|+.+
T Consensus 287 -~~~f~s~~~il~~~e~-~--------~~~~~~v~nP~fDyvppeLVtLFIsNtgg~~PSyvyRl~~d~Yh~~D~~l 353 (353)
T KOG1465|consen 287 -FHEFRSPSEILPFSEG-D--------PAGRVDVLNPAFDYVPPELVTLFISNTGGVAPSYVYRLMEDLYHPQDIAL 353 (353)
T ss_pred -HHhcCCcccccCcccc-C--------cccceeecccccccCChhheeEEEecCCCCChHHHHHHHHHhcChhhccC
Confidence 8899999999988651 1 12348999999999999999999999999999999999999999999764
No 2
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=100.00 E-value=1.1e-72 Score=553.81 Aligned_cols=300 Identities=29% Similarity=0.443 Sum_probs=281.8
Q ss_pred HHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhh
Q 045642 8 VSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIREE 87 (406)
Q Consensus 8 i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~Iree 87 (406)
+++.+..||+++++||.++|+++++.|+..+.. .+|.+.++|++.|+..+++|.++||++++|+|++||+++.|+..
T Consensus 2 ~~~~~~~ik~~~vrGa~~ia~~aa~~l~~~~~~---~~~~~~~~~~~~l~~~~~~L~~arPt~v~l~nai~~~~~~i~~~ 78 (301)
T TIGR00511 2 VEETAEKIRSMEIRGAGRIARAAAAALMEQAAK---AESASPEEFRAEMREAANILISTRPTAVSLPNAVRYVLKYMSGE 78 (301)
T ss_pred HHHHHHHHHhCcccCcHHHHHHHHHHHHHHHHh---cccCCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHhccC
Confidence 567899999999999999999999999999999 88999999999999999999999999999999999999887431
Q ss_pred ccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHHHH
Q 045642 88 DLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKKL 167 (406)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 167 (406)
+..++
T Consensus 79 ---------------------------------------------------------------------------~~~~~ 83 (301)
T TIGR00511 79 ---------------------------------------------------------------------------DVETL 83 (301)
T ss_pred ---------------------------------------------------------------------------CHHHH
Confidence 01567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHH
Q 045642 168 KSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELD 247 (406)
Q Consensus 168 k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~ 247 (406)
|+.+++.+++|++++..++++|+++|.++|++|++|||||+|+||+++|++|+++|++|+|||+||||.+||+.||++|.
T Consensus 84 k~~l~~~~~~~~~e~~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L~ 163 (301)
T TIGR00511 84 RETVIERADAFINQSDKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGHITAKELR 163 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccccCCCCccccccc
Q 045642 248 KKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNE 327 (406)
Q Consensus 248 ~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~~~d~~~i~~e 327 (406)
+.||+||+|+|++++++|++||+||+|||+|++||+++||+||+++|++||+|+||||||||+|||++.++.++.. .+|
T Consensus 164 ~~gI~vtlI~Dsa~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~K~~~~~~~~~~~-~ie 242 (301)
T TIGR00511 164 DYGIPVTLIVDSAVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAETYKFHPKTITGELV-EIE 242 (301)
T ss_pred HCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcccceecCCCCCCCcc-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988765 899
Q ss_pred cCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHHHHHHHhcCC
Q 045642 328 MRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSS 395 (406)
Q Consensus 328 ~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~~ll~e~y~~ 395 (406)
.++|.|++++++.. ..++++++||+||+|||+|||+||||.|+++|+++|++++++|+|
T Consensus 243 ~~~~~ev~~~~~~~---------~~~~~~v~np~fD~tP~~lIt~iITe~Gi~~p~~i~~~l~~~~~~ 301 (301)
T TIGR00511 243 ERDPTEVLDEEDLK---------QLGAVKVRNPAFDVTPAEYIDAIITEVGQIPPEMAYTIIKELLGW 301 (301)
T ss_pred ccCHHHhccccCcc---------CCCCccccCcceecCCHHHCCEEEeCCCcCCcHHHHHHHHHHcCC
Confidence 99999998765421 123489999999999999999999999999999999999999984
No 3
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=1.1e-72 Score=556.10 Aligned_cols=305 Identities=30% Similarity=0.434 Sum_probs=284.9
Q ss_pred chHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q 045642 3 DIQALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLH 82 (406)
Q Consensus 3 ~~~~~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~ 82 (406)
.+|+.+++++..||+++++||.++|+++++.|+.+++. .+|.+..+|++.|+..+++|.++||++++++|++||+++
T Consensus 2 ~~~~~v~~~~~~i~~~~v~Ga~~i~~~a~~~l~~~~~~---~~~~~~~~l~~~l~~~~~~L~~arPt~v~l~nair~v~~ 78 (310)
T PRK08535 2 EVMPEVLETAEKIKTMEIRGAGRIARAAAEALKDQAEK---SDAESPEEFKAEMRAAANILISTRPTAVSLPNAVRYVMR 78 (310)
T ss_pred CCchhHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 47999999999999999999999999999999999999 889999999999999999999999999999999999986
Q ss_pred HHHhhccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccc
Q 045642 83 IIREEDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADK 162 (406)
Q Consensus 83 ~Iree~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~ 162 (406)
.... .
T Consensus 79 ~~~~---------------------------------------------------------------------------~ 83 (310)
T PRK08535 79 YYSG---------------------------------------------------------------------------E 83 (310)
T ss_pred hhcc---------------------------------------------------------------------------C
Confidence 4110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHH
Q 045642 163 SAKKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHIL 242 (406)
Q Consensus 163 ~~~~~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~ 242 (406)
+.+++|+.+++.+++|++++..++++|++++.++|++|++|||||+|+||+++|+.|+++|++|+|||+||||.+||+.|
T Consensus 84 ~~~~~k~~l~e~~~~~~~e~~~~~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~EsrP~~~G~~~ 163 (310)
T PRK08535 84 TVEEARESVIERAEEFIESSENAVEKIGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQGKDIEVIATETRPRNQGHIT 163 (310)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEecCCchhhHHHH
Confidence 12678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccccCCCCcc
Q 045642 243 AKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLE 322 (406)
Q Consensus 243 a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~~~d~~ 322 (406)
|++|.+.||+||+|+|++++++|++||+||+|||+|++||+++||+||+++|++||+|+||||||||+|||++.++.++.
T Consensus 164 a~~L~~~GI~vtlI~Dsav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~K~~~~~~~~~~ 243 (310)
T PRK08535 164 AKELAEYGIPVTLIVDSAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAETYKFSPKTLLGEL 243 (310)
T ss_pred HHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecccceecCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ccccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHHHHHHHhcCC
Q 045642 323 VLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSS 395 (406)
Q Consensus 323 ~i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~~ll~e~y~~ 395 (406)
. .+|+++|.|+++++. .. ..++++++||+||+|||+|||+||||.|+++|+++++++++||+|
T Consensus 244 ~-~ie~~~~~ev~~~~~-~~--------~~~~v~v~np~fD~tP~~lIt~iiTe~Gi~~ps~v~~~~~~~~~~ 306 (310)
T PRK08535 244 V-EIEERDPTEVLPEEI-LA--------KLPGVKVRNPAFDVTPPEYIDAIITEIGAIPPEMAYTIIKEYLGW 306 (310)
T ss_pred c-eecccCHHHhccccc-cc--------CCCCceeeccCcccCCHHHCCEEEeCCCcCChHHHHHHHHHHhCC
Confidence 5 899999999986532 11 123489999999999999999999999999999999999999983
No 4
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-71 Score=532.78 Aligned_cols=300 Identities=37% Similarity=0.554 Sum_probs=282.1
Q ss_pred hHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q 045642 4 IQALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHI 83 (406)
Q Consensus 4 ~~~~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~ 83 (406)
+++.|..+.++||+++++||.++|++++++|++++++ .+|.++++|++.++..++.|.+++|++++++|++|++++
T Consensus 2 ~~~~v~~~~~~lk~~~i~Ga~~ia~~a~eal~~~~~~---~~~~~~~~l~~~i~~~~~~L~~~~P~~~Sl~n~~r~v~~- 77 (301)
T COG1184 2 IMPEVDETAEKLKSMEIRGASWIAIAAAEALEILASD---SQAPTVEELIDAIRELSETLVKARPTAVSLGNLIRFVLR- 77 (301)
T ss_pred chHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhc---cccccHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHh-
Confidence 6889999999999999999999999999999999999 999999999999999999999999999999999999975
Q ss_pred HHhhccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccch
Q 045642 84 IREEDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKS 163 (406)
Q Consensus 84 Iree~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~ 163 (406)
.. + ..+
T Consensus 78 --~~------------------~------------------------------------------------------~~~ 83 (301)
T COG1184 78 --DS------------------S------------------------------------------------------GGD 83 (301)
T ss_pred --cc------------------c------------------------------------------------------ccc
Confidence 10 0 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHH
Q 045642 164 AKKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILA 243 (406)
Q Consensus 164 ~~~~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a 243 (406)
..+.|+.+++.+++|+++++.+.+.|++.++++|++|++|||||+|++|..+|++|++.+++|+|||+||||.+||+.||
T Consensus 84 ~~~~~~~~~~~~~~~i~~~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~a 163 (301)
T COG1184 84 KENRRQSLIKAAQEFIDRVEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMA 163 (301)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHH
Confidence 25678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccccCCCCccc
Q 045642 244 KELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEV 323 (406)
Q Consensus 244 ~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~~~d~~~ 323 (406)
+.|+++||+|++|+||+++++|++||+||+|||+|++||+++||+||+++|++||++++||||||++|||+|.++++...
T Consensus 164 k~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesyKf~p~~~~~~~~ 243 (301)
T COG1184 164 KELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESYKFVPKTLLDTLV 243 (301)
T ss_pred HHHHHcCCceEEEechHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeeeecccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHHHHHHHhcC
Q 045642 324 LLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYS 394 (406)
Q Consensus 324 i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~~ll~e~y~ 394 (406)
.+|++++.++....+ ..+++++||+||+|||+|||+||||.|+++|+.++++++|+|.
T Consensus 244 -~~~~~~~~e~~~~~~------------~~~~~v~Np~fD~TP~~~Id~iITe~G~~pp~~~~~i~~e~~~ 301 (301)
T COG1184 244 -EIELRDPLEVAREEP------------LGNLKVRNPAFDVTPPEYIDAIITELGIIPPSSIYRILRELYG 301 (301)
T ss_pred -eeeccChhhccccCc------------ccCccccccccCCCcHHHhheeeecCCCCCchhHHHHHHHhhC
Confidence 899999999873222 1148999999999999999999999999999999999999984
No 5
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=100.00 E-value=2.3e-67 Score=515.60 Aligned_cols=290 Identities=23% Similarity=0.328 Sum_probs=268.2
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHh
Q 045642 7 LVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIRE 86 (406)
Q Consensus 7 ~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~Ire 86 (406)
.+++++..||+++++||+.+|.+++..|...+.. .+|.+.++|.+.|+..+++|.++||++++|+|++||+++.+++
T Consensus 3 ~~~~~~~~I~~m~vrGa~~ia~aa~~~l~~~~~~---~~~~~~~e~~~~l~~~~~~L~~~RPt~v~l~na~~~~~~~i~~ 79 (303)
T TIGR00524 3 TYEDVADAIKSMVVRGAPAIGVAAAYGLALAARK---IETDNVEEFKEDLEKAADFLLSTRPTAVNLFWALERVLNSAEN 79 (303)
T ss_pred CHHHHHHHHHhCeecChHHHHHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999988 7889999999999999999999999999999999999988753
Q ss_pred hccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHHH
Q 045642 87 EDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKK 166 (406)
Q Consensus 87 e~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 166 (406)
. . +.++
T Consensus 80 ~------~--------------------------------------------------------------------~~~~ 85 (303)
T TIGR00524 80 G------E--------------------------------------------------------------------SVEE 85 (303)
T ss_pred c------C--------------------------------------------------------------------CHHH
Confidence 1 0 1256
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccCh--------HHHHHHHHHHHHcCCceEEEEecCCCCcc
Q 045642 167 LKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHS--------KFVKEFLCAAKEKKRSFEVFIADGAPKFE 238 (406)
Q Consensus 167 ~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S--------~tV~~~L~~A~~~~~~f~ViV~EsrP~~e 238 (406)
+|+.+++.+++|+++...++++|+++|.++|++|++|||||+| +||+.+|+.|+++|++|+|||+||||.+|
T Consensus 86 ~k~~l~~~~~~~~~e~~~~~~~Ia~~a~~~I~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g~~~~V~v~EsrP~~~ 165 (303)
T TIGR00524 86 AKESLLREAIEIIEEDLETNRKIGENGAKLIKDGDTVLTHCNAGALATSDYGTALGVIRSAWEDGKRIRVIACETRPRNQ 165 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEecCCccccccCcchHHHHHHHHHHcCCceEEEECCCCCccc
Confidence 8999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred h-HHHHHHHHhCCCceEEEcchHHHHHhh--cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 239 G-HILAKELDKKGLKAIVITDSAVFAMIS--RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 239 G-~~~a~~L~~~GI~vt~I~Dsav~~~m~--~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
| +.+|++|.+.||+|++|+|++++++|+ +||+||+|||+|++||+++||+||+++|++||+|+||||||||+|||++
T Consensus 166 G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~s~K~~~ 245 (303)
T TIGR00524 166 GSRLTAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAPLSTFDT 245 (303)
T ss_pred hHHHHHHHHHHCCCCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEecccccccC
Confidence 9 999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCC
Q 045642 316 LYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSP 382 (406)
Q Consensus 316 ~~~~d~~~i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~P 382 (406)
.++.+.. +++|+++|.|+..+.+.... ..+++++||+||||||+|||+||||.|+++|
T Consensus 246 ~~~~g~~-i~~e~~~~~ev~~~~~~~~~--------~~~~~v~np~fD~TP~~lIt~iiTe~Gv~~p 303 (303)
T TIGR00524 246 KTSCGED-IVIEERDPEEVAQVGGVRIA--------PLGVKVYNPAFDITPHDLIDAIITEKGIITP 303 (303)
T ss_pred CCCCccc-cccccCCHHHhccccCcccC--------CCCceeecccccCCCHHHCCEEEcCCCccCc
Confidence 9876544 48899999999866542111 2359999999999999999999999999987
No 6
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=100.00 E-value=6.3e-68 Score=516.80 Aligned_cols=281 Identities=40% Similarity=0.639 Sum_probs=244.5
Q ss_pred CccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhccCCCcccccc
Q 045642 19 RVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIREEDLSPLTDIVGE 98 (406)
Q Consensus 19 ~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~Iree~~~~~~~~~~~ 98 (406)
|++||+++|+++++.|+++++. .+|.+.++|++.|+.++++|.++||++++|+|++||+++.|+....+
T Consensus 1 qi~Gs~~~ai~al~~L~~~i~~---~~~~~~~el~~~L~~~~~~L~~arP~~~~l~n~v~~~~~~i~~~~~~-------- 69 (282)
T PF01008_consen 1 QIRGSPAIAIAALEALRQVISD---SKATTVQELIEELRKAAKRLIKARPTSVSLGNAVRRILREIRKLDES-------- 69 (282)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHH---CHCSSHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHHHHTT--------
T ss_pred CccChHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhhhhhcc--------
Confidence 7899999999999999999999 99999999999999999999999999999999999999977664210
Q ss_pred cccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHHHHHHHHHHHHHHH
Q 045642 99 LKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKKLKSELIKAVNEL 178 (406)
Q Consensus 99 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~k~~l~~~i~~~ 178 (406)
.+..+.|+.+++.+++|
T Consensus 70 ---------------------------------------------------------------~~~~~~~~~l~~~i~~~ 86 (282)
T PF01008_consen 70 ---------------------------------------------------------------EDFEEAKQSLLEAIDEF 86 (282)
T ss_dssp ---------------------------------------------------------------SSHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------cchHHHHHHHHHHHHHH
Confidence 01367889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc
Q 045642 179 IEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD 258 (406)
Q Consensus 179 ~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D 258 (406)
++++..+.++|++++.++|++|++|||||+|++|.++|..|+++|++|+|||+||||.+||+.||++|++.||+|++|+|
T Consensus 87 ~~e~~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~~~~~~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d 166 (282)
T PF01008_consen 87 LDEIEQAREKIADHASELINDGDTILTHGYSSTVERFLLSAKKKGKKFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPD 166 (282)
T ss_dssp HHHHHHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-G
T ss_pred HhHHHHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHHHcCCeEEEEEccCCcchhhhhHHHHhhhcceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhc-CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccccCCCCccccccccCCccccccc
Q 045642 259 SAVFAMISR-VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNF 337 (406)
Q Consensus 259 sav~~~m~~-vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~~~d~~~i~~e~~~p~ev~~~ 337 (406)
++++++|++ ||+||+|||+|++||+++||+||+++|++||+|+|||||+|++|||++.++.++.. .+|+++|.+++++
T Consensus 167 ~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K~~~~~~~~~~~-~~e~~~~~~v~~~ 245 (282)
T PF01008_consen 167 SAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESYKFSPRYPLDQDS-FNELRDPQEVLPF 245 (282)
T ss_dssp GGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GGGBETTCSSGGGS-SS-B--THHHHEE
T ss_pred hHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccccccccccccchh-hhhccccceeecc
Confidence 999999999 99999999999999999999999999999999999999999999999999999887 8999999999987
Q ss_pred CCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCC
Q 045642 338 EEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSP 382 (406)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~P 382 (406)
++.... ..+++++||+||+|||+|||+||||.|+++|
T Consensus 246 ~~~~~~--------~~~v~~~~p~~D~tP~~~It~~iTe~G~~~P 282 (282)
T PF01008_consen 246 DGSSIV--------PENVDVINPLFDYTPPDLITLIITELGILPP 282 (282)
T ss_dssp TTEEES--------TTTEEEE-BSEEEEEGGG-SEEEETTEEE-C
T ss_pred CCcccc--------cceeeccCccEeecCHHHCCEEEcCCCCCCc
Confidence 662221 2259999999999999999999999999998
No 7
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=100.00 E-value=4.7e-64 Score=498.06 Aligned_cols=301 Identities=25% Similarity=0.330 Sum_probs=270.0
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHh
Q 045642 7 LVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIRE 86 (406)
Q Consensus 7 ~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~Ire 86 (406)
.+++.+..||.++|+|+.+++++++..|...+.. .+..+..++.+.++..+++|.++||++++++|.++|+++.+.+
T Consensus 32 ~~~~v~~aI~~m~vrGApaig~aaa~~lal~~~~---~~~~~~~~~~~~l~~~~~~L~~~RPtavnL~~ai~~~~~~i~~ 108 (344)
T PRK05720 32 TAEEVADAIRDMVVRGAPAIGIAAAYGMALAARE---DASDDGEEFLKKLEEAAAYLAASRPTAVNLFWALDRMREVLAP 108 (344)
T ss_pred CHHHHHHHHHhCeecCCcHHHHHHHHHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999877766 4445788999999999999999999999999999999866532
Q ss_pred hccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHHH
Q 045642 87 EDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKK 166 (406)
Q Consensus 87 e~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 166 (406)
. +.++
T Consensus 109 ~---------------------------------------------------------------------------~~~~ 113 (344)
T PRK05720 109 L---------------------------------------------------------------------------PGAE 113 (344)
T ss_pred C---------------------------------------------------------------------------CHHH
Confidence 1 0156
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChH--------HHHHHHHHHHHcCCceEEEEecCCCCcc
Q 045642 167 LKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSK--------FVKEFLCAAKEKKRSFEVFIADGAPKFE 238 (406)
Q Consensus 167 ~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~--------tV~~~L~~A~~~~~~f~ViV~EsrP~~e 238 (406)
+|+.+++.+++|++|...+++.|+++|+++|++|++|||||+|+ |++.+|+.|+++|++|+|||+||||.+|
T Consensus 114 ~~~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~gk~~~V~v~EsRP~~q 193 (344)
T PRK05720 114 RKAALEEEAIEIHEEDVEINRAIGEHGLTLIRKGQGILTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQ 193 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEecCCCcceecchhHHHHHHHHHHHcCCceEEEEcCCCChhh
Confidence 78999999999999999999999999999999999999999886 5788999999999999999999999999
Q ss_pred hH-HHHHHHHhCCCceEEEcchHHHHHhh--cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 239 GH-ILAKELDKKGLKAIVITDSAVFAMIS--RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 239 G~-~~a~~L~~~GI~vt~I~Dsav~~~m~--~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
|. ++|++|.+.||+||+|+|++++++|+ +||+||+|||+|++||+++||+|||++|++||+|+|||||+||+|||++
T Consensus 194 G~~lta~eL~~~GI~vtlI~Dsa~~~~M~~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~kfd~ 273 (344)
T PRK05720 194 GARLTAWELYQAGIDVTVITDNMAAHLMQTGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDL 273 (344)
T ss_pred hHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccCc
Confidence 96 78999999999999999999999998 4999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHHHHHHHhcCC
Q 045642 316 LYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYSS 395 (406)
Q Consensus 316 ~~~~d~~~i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~~ll~e~y~~ 395 (406)
..+.+.. +++|+++|.|++.+++.... ..+++++||+||+|||+|||+||||.|+++|++++.+ ++++..
T Consensus 274 ~~~~g~~-i~iE~r~~~ev~~~~~~~~~--------~~~v~v~Np~FDvTP~~lIt~iITE~Gv~~p~~~~~~-~~~~~~ 343 (344)
T PRK05720 274 TLADGKE-IPIEERDPEEVTEVGGVRIA--------PEGVKVYNPAFDVTPAELITGIITEKGIVAPPDTANL-AALFPE 343 (344)
T ss_pred CCCCCcc-cccccCCHHHhcccCCcccC--------CCCceeecccccCCCHHHCCEEEcCCCccCccHHHHH-HHHhcc
Confidence 9887644 58999999999987652211 2248999999999999999999999999999998854 776653
No 8
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-64 Score=498.68 Aligned_cols=320 Identities=24% Similarity=0.363 Sum_probs=293.9
Q ss_pred chHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q 045642 3 DIQALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASG-AASLIEAVRRVGEQLIAANPVELAVGNIVRHVL 81 (406)
Q Consensus 3 ~~~~~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~-~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl 81 (406)
-+||+|..|-.++..++|.|+++.++++++.|+++|.+|.+++-.+ .++|...|+....+|.++||..++|||++|.+.
T Consensus 232 ~IHPAv~~Lglq~a~~kI~GsnaRCIa~L~afqevi~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK 311 (556)
T KOG1467|consen 232 SIHPAVLRLGLQYALGKISGSNARCIAMLQAFQEVIKDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLK 311 (556)
T ss_pred cccHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHHHhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHH
Confidence 3999999999999999999999999999999999999999877666 669999999999999999999999999999999
Q ss_pred HHHHhhccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCccc
Q 045642 82 HIIREEDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKAD 161 (406)
Q Consensus 82 ~~Iree~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~ 161 (406)
+.|+.-- .+
T Consensus 312 ~eI~~L~-----------------------------------------------------------------------~s 320 (556)
T KOG1467|consen 312 NEISKLP-----------------------------------------------------------------------IS 320 (556)
T ss_pred HHHhhCC-----------------------------------------------------------------------CC
Confidence 8776531 01
Q ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH
Q 045642 162 KSAKKLKSELIKAVNELIE-DINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH 240 (406)
Q Consensus 162 ~~~~~~k~~l~~~i~~~~~-e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~ 240 (406)
.+..+.|+.|++.|+.|++ .+..+...|++++.+.|.+||+|||||+|++|..+|.+|++.|++|+|+|++|||++||+
T Consensus 321 ~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~ 400 (556)
T KOG1467|consen 321 LSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVVVVDSRPNLEGR 400 (556)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEEEEeCCCCcchH
Confidence 1236789999999999997 588999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccccCCCC
Q 045642 241 ILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHN 320 (406)
Q Consensus 241 ~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~~~d 320 (406)
.+++.|...||+|+|+..++++|+|..+++|||||++|++||.+++++||.++||+|++|+|||+||||+|||+.+++.|
T Consensus 401 ~~lr~Lv~~GinctYv~I~a~syim~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~yKF~eRvQlD 480 (556)
T KOG1467|consen 401 KLLRRLVDRGINCTYVLINAASYIMLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAYKFHERVQLD 480 (556)
T ss_pred HHHHHHHHcCCCeEEEEehhHHHHHHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHHHHHHHhcC
Q 045642 321 LEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYS 394 (406)
Q Consensus 321 ~~~i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~~ll~e~y~ 394 (406)
... +||++||.++...+|..+..-...|+...++.+.|..||.||||||+++|||.|+++|++++.+|++|-.
T Consensus 481 si~-~NEL~dpn~l~~v~g~~~~~~L~~wqn~~~L~~lnl~YD~TPpelIs~vVTe~g~lp~TSVPvilr~~~~ 553 (556)
T KOG1467|consen 481 SIV-SNELGDPNALQEVRGREDKVALAGWQNNANLKFLNLMYDVTPPELISAVVTELGMLPPTSVPVILREKKL 553 (556)
T ss_pred hhh-hcccCChhhhhhccCcchhhhhhccccccccchhheeeccCcHHHHHHHHhhccccCCccchHHHhhhhc
Confidence 887 9999999988766552111111246677889999999999999999999999999999999999999754
No 9
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=100.00 E-value=3e-62 Score=470.86 Aligned_cols=271 Identities=26% Similarity=0.345 Sum_probs=244.4
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Q 045642 5 QALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHII 84 (406)
Q Consensus 5 ~~~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~I 84 (406)
.+.+..+++.+++++++|+.+++++++..|...... . +.+++++.++..+.+|.++||+++++.|+++|+.
T Consensus 3 ~~~~~~~~~~i~~m~vrGAp~i~~~aa~~l~~~a~~---~---~~~~~~~~l~~~~~~L~~aRPTavnL~~a~~~~~--- 73 (275)
T PRK08335 3 PPEVREILEEMKAERIRGASWLAKKGAEAYLLLAEE---L---DGEELENALKELREEIPEVNPTMASLYNLARFIP--- 73 (275)
T ss_pred chHHHHHHHHHhhceecCHHHHHHHHHHHHHHHHHh---c---ChHHHHHHHHHHHHHHHHcCCcHHhHHHHHHHhc---
Confidence 357889999999999999999999999998765544 2 2377889999999999999999999999999971
Q ss_pred HhhccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchH
Q 045642 85 REEDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSA 164 (406)
Q Consensus 85 ree~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 164 (406)
.+
T Consensus 74 -~~----------------------------------------------------------------------------- 75 (275)
T PRK08335 74 -IT----------------------------------------------------------------------------- 75 (275)
T ss_pred -hh-----------------------------------------------------------------------------
Confidence 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHH
Q 045642 165 KKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAK 244 (406)
Q Consensus 165 ~~~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~ 244 (406)
+.++.+.+.+++|+++...++++|+++++++|++|++|||||+|+||+++|+.|+++|++|+|||+||||.+||..||+
T Consensus 76 -~~~~~~~~~a~~~~~~~~~~~~~I~~~a~~~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~ 154 (275)
T PRK08335 76 -NNPELVKSRAEEFLRLMEEAKREIGNIGSELIDDGDVIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALAN 154 (275)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHHHHH
Confidence 1346688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccccCCCCcccc
Q 045642 245 ELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVL 324 (406)
Q Consensus 245 ~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~~~d~~~i 324 (406)
+|.+.||+|++|+|++++++|++||+||+|||+|++||+++||+|||++|++||+|+|||||+||+|||++.++.+. +
T Consensus 155 eL~~~GI~vtlI~Dsa~~~~m~~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~k~~~~~~~~~--i 232 (275)
T PRK08335 155 ELEFLGIEFEVITDAQLGLFAKEATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAETFKFHPELKSEE--V 232 (275)
T ss_pred HHHHCCCCEEEEeccHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECccceecccCCCCC--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877652 3
Q ss_pred ccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChh
Q 045642 325 LNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSY 384 (406)
Q Consensus 325 ~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~ 384 (406)
.+|.+++. ..+++++||+||+|||+|||+||||.|+++|+.
T Consensus 233 ~ieer~~~-------------------~~~~~v~Np~FDvTP~~lIt~iITE~Gv~~p~~ 273 (275)
T PRK08335 233 ELVERPYA-------------------RQGHRVRNVLFDVTPWKYVRGIITELGILVPPR 273 (275)
T ss_pred cccccCCC-------------------CCCceecCcCccCCCHHHCCEEEccCCccCCCC
Confidence 55555431 123889999999999999999999999998764
No 10
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=100.00 E-value=3.9e-62 Score=481.20 Aligned_cols=288 Identities=25% Similarity=0.343 Sum_probs=259.4
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHh
Q 045642 7 LVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIRE 86 (406)
Q Consensus 7 ~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~Ire 86 (406)
.+++.+..||.++|+|+.+++++++..|...... . .+.+++.+.|+....+|.++||+.++|+|+++|+++.+..
T Consensus 29 ~~~~~~~aI~~m~vRGApaig~~aa~~~~l~~~~---~--~~~~~~~~~l~~~~~~L~~~RPtavnL~~A~~~~~~~i~~ 103 (331)
T TIGR00512 29 TVEDVADAIRDMRVRGAPAIGIVAAYGLALAARE---A--DEREEFKALLEEKLQYLVSSRPTAVNLSWALDRMRAALEA 103 (331)
T ss_pred CHHHHHHHHHhCcccCchHHHHHHHHHHHHHHhh---c--CCHHHHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHHhc
Confidence 4678899999999999999999999888765544 3 4788999999999999999999999999999999876643
Q ss_pred hccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHHH
Q 045642 87 EDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKK 166 (406)
Q Consensus 87 e~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 166 (406)
. . +.++
T Consensus 104 ~------~--------------------------------------------------------------------~~~~ 109 (331)
T TIGR00512 104 A------K--------------------------------------------------------------------TVAD 109 (331)
T ss_pred c------C--------------------------------------------------------------------CHHH
Confidence 1 0 1256
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc----EEEeccCh--------HHHHHHHHHHHHcCCceEEEEecCC
Q 045642 167 LKSELIKAVNELIEDINTCREGIAEQAMELIHQNE----VILTLGHS--------KFVKEFLCAAKEKKRSFEVFIADGA 234 (406)
Q Consensus 167 ~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~----~ILT~g~S--------~tV~~~L~~A~~~~~~f~ViV~Esr 234 (406)
+|+.+++.+++|++|...++++|+++|+++|++|+ +||||++| +||+.+|+.|+++|++|+|||+|||
T Consensus 110 ~k~~l~e~a~~~~~e~~~~~~~I~~~g~~~I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~~~~V~v~Esr 189 (331)
T TIGR00512 110 IKEALLAEAERILEEDLEDNRAIGENGAALIKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEKGRLEHVYADETR 189 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeecCCccccccccchHHHHHHHHHHcCCceEEEECCCC
Confidence 78999999999999999999999999999999999 99999765 4999999999999999999999999
Q ss_pred CCcchH-HHHHHHHhCCCceEEEcchHHHHHhh--cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCc
Q 045642 235 PKFEGH-ILAKELDKKGLKAIVITDSAVFAMIS--RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTH 311 (406)
Q Consensus 235 P~~eG~-~~a~~L~~~GI~vt~I~Dsav~~~m~--~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~ 311 (406)
|.+||. .+|++|.+.||+||+|+|++++|+|+ +||+||+|||+|++||+++||+|||++|++||+|+|||||+||+|
T Consensus 190 P~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~ 269 (331)
T TIGR00512 190 PRLQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPTS 269 (331)
T ss_pred chhhHHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecccc
Confidence 999996 78999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccccccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCC
Q 045642 312 ELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSP 382 (406)
Q Consensus 312 K~~~~~~~d~~~i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~P 382 (406)
||++.++.+.. +++|+++|.|+..+.+... ..++++++||+||+|||+|||+||||.|+++|
T Consensus 270 kfd~~~~~~~~-i~iE~r~p~ev~~~~g~~~--------~~~~~~v~Np~FD~TP~~lIt~iITe~Gv~~p 331 (331)
T TIGR00512 270 TIDLETKDGAE-IPIEERPPEEVTHVGGVRI--------APPGIDVWNPAFDVTPAELITGIITEKGVITP 331 (331)
T ss_pred ccccCCCCccc-cccccCCHHHhcccCCccc--------CCCCceeecccccCCCHHHCCEEEccCCccCC
Confidence 99998776544 5999999999987655211 12348999999999999999999999999987
No 11
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=1.2e-61 Score=479.09 Aligned_cols=292 Identities=20% Similarity=0.278 Sum_probs=261.4
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHh
Q 045642 7 LVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIRE 86 (406)
Q Consensus 7 ~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~Ire 86 (406)
.+++.+..||.++|+|+.+++++++..|...... .++.+.++|++.++..+++|.++||++++++|+++|+++.+++
T Consensus 32 ~~~~v~~aI~~m~vRGApaig~aaa~g~~l~~~~---~~~~~~~~~~~~l~~~~~~L~~aRPTavnL~~a~~r~~~~~~~ 108 (339)
T PRK06036 32 TLESLCEAIKSLRVRGAPALGAAGGYGIALAARL---SKAKDVDELLKDLKVAAETLKSTRPTAVNLSWGVDRVLKAALD 108 (339)
T ss_pred CHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHh---cccCCHHHHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHhhc
Confidence 4678899999999999999999999888766666 6678899999999999999999999999999999999875543
Q ss_pred hccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHHH
Q 045642 87 EDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKK 166 (406)
Q Consensus 87 e~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 166 (406)
+. +.++
T Consensus 109 ~~--------------------------------------------------------------------------~~~~ 114 (339)
T PRK06036 109 AE--------------------------------------------------------------------------DVEE 114 (339)
T ss_pred cC--------------------------------------------------------------------------CHHH
Confidence 20 1256
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChH--------HHHHHHHHHHHcCCceEEEEecCCCCcc
Q 045642 167 LKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSK--------FVKEFLCAAKEKKRSFEVFIADGAPKFE 238 (406)
Q Consensus 167 ~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~--------tV~~~L~~A~~~~~~f~ViV~EsrP~~e 238 (406)
+|+.+++.+++++++...++++|+++++++|++|++|||||+|+ |++.+|+.|+++|++|+|||+||||.+|
T Consensus 115 ~~~~~~e~a~~~~~e~~~~~~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~l~~A~~~gk~~~V~v~EtRP~~q 194 (339)
T PRK06036 115 IRDIALREAERIAEEDVARNKLIGKHGAKLLEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQGKEIKVIACETRPLNQ 194 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEecCCccccccccchHHHHHHHHHHcCCceEEEEcCCCchhh
Confidence 78899999999999999999999999999999999999999885 7789999999999999999999999999
Q ss_pred hH-HHHHHHHhCCCceEEEcchHHHHHhhc--CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 239 GH-ILAKELDKKGLKAIVITDSAVFAMISR--VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 239 G~-~~a~~L~~~GI~vt~I~Dsav~~~m~~--vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
|. ++|++|.+.||+||+|+|++++++|++ ||+||+|||+|++|| ++||+|||++|++||+|+|||||+|+++||++
T Consensus 195 G~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~anG-v~NKiGT~~lA~~Ak~~~vPfyV~ap~s~~d~ 273 (339)
T PRK06036 195 GSRLTTWELMQDNIPVTLITDSMAGIVMRQGMVDKVIVGADRITRDA-VFNKIGTYTHSVLAKEHEIPFYVAAPLSTFDF 273 (339)
T ss_pred HHHHHHHHHHHcCCCEEEEehhHHHHHhccCCCCEEEECccchhhcC-eehhhhHHHHHHHHHHhCCCEEEEeecCccCC
Confidence 95 679999999999999999999999987 999999999999996 99999999999999999999999999999998
Q ss_pred cCCCCccccccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHH
Q 045642 316 LYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIY 386 (406)
Q Consensus 316 ~~~~d~~~i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~ 386 (406)
....+ .+.+|+++|.|+..+.+... ..++++++||+||+|||+|||+||||.|++.|++..
T Consensus 274 ~~~~g--~i~iE~r~~~Ev~~~~~~~~--------~~~~v~v~Np~FDvTP~~lIt~iITE~Gv~~P~~~~ 334 (339)
T PRK06036 274 EGWEG--SVKIEERDPDELRYCGKTQI--------APKDVPVYNPAFDATPMENVTAIITEKGVFYPPFLL 334 (339)
T ss_pred CcCCC--CcccccCCHHHhccccCccc--------CCCCceeeCcccccCCHHHCCEEEccCCcccCCccc
Confidence 76555 45899999999987654211 123489999999999999999999999999998643
No 12
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=4.1e-60 Score=470.50 Aligned_cols=304 Identities=21% Similarity=0.265 Sum_probs=265.7
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHh
Q 045642 7 LVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIRE 86 (406)
Q Consensus 7 ~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~Ire 86 (406)
.+++.+..||+++|+|+..++++++..|...+.. .+..+.+++++.++....+|.++||+.+++.|+++|+++.+..
T Consensus 45 ~~~~v~~aI~~M~vRGApaigiaAa~glal~~~~---~~~~~~~~~~~~l~~~~~~L~~aRPTaVnL~~a~~~~~~~~~~ 121 (363)
T PRK05772 45 TVEEVALAIRNMQVRGAPAIGITAGYGMVLALIE---NNVKTLDDAIRELTRAKTILDSARPTAVNLVWATSRMLNKAKN 121 (363)
T ss_pred CHHHHHHHHHhCcccCCcHHHHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHhcCCcHHhHHHHHHHHHHHHHh
Confidence 4678899999999999999999999988776766 4445889999999999999999999999999999999887753
Q ss_pred hccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHHH
Q 045642 87 EDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKK 166 (406)
Q Consensus 87 e~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 166 (406)
-.++ . ...+.++
T Consensus 122 ~~~~---~-----------------------------------------------------------------~~~~~~~ 133 (363)
T PRK05772 122 TVES---G-----------------------------------------------------------------NAKSVNE 133 (363)
T ss_pred hhcc---c-----------------------------------------------------------------cCCCHHH
Confidence 1100 0 0012367
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChH---------HHHHHHHHHHHcCCceEEEEecCCCCc
Q 045642 167 LKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSK---------FVKEFLCAAKEKKRSFEVFIADGAPKF 237 (406)
Q Consensus 167 ~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~---------tV~~~L~~A~~~~~~f~ViV~EsrP~~ 237 (406)
+++.+++.+++++++...++++|+++++++|++|++|||||+|+ |+...|+.|+++|++|+|||+||||.+
T Consensus 134 ~~~~l~~~A~~i~~ed~~~~~~I~~~g~~~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~ 213 (363)
T PRK05772 134 LIELLKVEAKKIFEEEYDAEIQMGLYGLEKLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWL 213 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCccc
Confidence 88999999999999999999999999999999999999999874 678999999999999999999999999
Q ss_pred chH-HHHHHHHhCCCceEEEcchHHHHHhhc--CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCcccc
Q 045642 238 EGH-ILAKELDKKGLKAIVITDSAVFAMISR--VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELC 314 (406)
Q Consensus 238 eG~-~~a~~L~~~GI~vt~I~Dsav~~~m~~--vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~ 314 (406)
||. ++|++|.+.||+||+|+|++++++|++ ||+||+|||+|++||+++||+|||++|++||+|+|||||+||+|||+
T Consensus 214 qG~rlta~eL~~~GIpvtlI~Dsa~~~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~k~d 293 (363)
T PRK05772 214 QGSRLTVYELMEEGIKVTLITDTAVGLVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAPTSTFD 293 (363)
T ss_pred hhHHHHHHHHHHCCCCEEEEehhHHHHHHhhcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEccccccC
Confidence 995 779999999999999999999999965 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHHHHHHHh
Q 045642 315 SLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADY 392 (406)
Q Consensus 315 ~~~~~d~~~i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~~ll~e~ 392 (406)
+.++.+ .+.+|+++|.|+..+.+... ..++++++||+||+|||+|||+||||.|+++|++...+ +++
T Consensus 294 ~~~~~~--~i~ieer~p~ev~~~~~~~~--------~~~~~~v~Np~FDvTP~~lIt~iITE~Gv~~p~~~~~~-~~~ 360 (363)
T PRK05772 294 LKSDVN--DVKIEERDPNEVRTIRGVPI--------TPEDVNVYNPVFDVTPPKYITGIITEKGIIYPPFHKNI-RKI 360 (363)
T ss_pred cccccc--ccccccCCHHHhcccCCcee--------cCCCceeeccCccCCCHHHCCEEEccCCccCCchHHHH-HHH
Confidence 988764 34789999999987655211 12348999999999999999999999999999865543 443
No 13
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=100.00 E-value=2.5e-59 Score=462.76 Aligned_cols=301 Identities=20% Similarity=0.283 Sum_probs=267.2
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHh
Q 045642 7 LVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIRE 86 (406)
Q Consensus 7 ~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~Ire 86 (406)
.+++.+..||.++|+|+..++++++..|...+.. .+..+..++++.++.....|..+||+.+++.|.++|+++.+..
T Consensus 43 ~~~~v~~aI~~M~vRGApaIgvaAa~glal~~~~---~~~~~~~~~~~~l~~~~~~L~~~RPTavnL~~a~~~~~~~~~~ 119 (356)
T PRK08334 43 TVEEVAEAIKTMTVRGAPAIGAAAAFGLALYAET---SKAKTKDEFMDGFYKAYETLKNTRPTAVNLFWALNRIKKLVEE 119 (356)
T ss_pred CHHHHHHHHHhCcccCcHHHHHHHHHHHHHHHHh---cccCCHHHHHHHHHHHHHHHHHcCCcHHhHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999887777 4445789999999999999999999999999999999877643
Q ss_pred hccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHHH
Q 045642 87 EDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKK 166 (406)
Q Consensus 87 e~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 166 (406)
... .+.++
T Consensus 120 ~~~------------------------------------------------------------------------~~~~~ 127 (356)
T PRK08334 120 HLE------------------------------------------------------------------------DPLDE 127 (356)
T ss_pred hcc------------------------------------------------------------------------CCHHH
Confidence 100 01256
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEecc--------ChHHHHHHHHHHHHcCCceEEEEecCCCCcc
Q 045642 167 LKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLG--------HSKFVKEFLCAAKEKKRSFEVFIADGAPKFE 238 (406)
Q Consensus 167 ~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g--------~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~e 238 (406)
+++.+++.+++++++...++++|+++++++|.+|+ ||||+ +|+|+..+|+.|+++|+.|+|||+||||.+|
T Consensus 128 ~~~~l~~~a~~i~~~d~~~~~~Ig~~g~~li~dg~-ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~EtRP~~q 206 (356)
T PRK08334 128 IKRLIVEEAQKIADEDVEANLRMGHYGAEVLPEGN-VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQ 206 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-EEEecCcchhhhcccchHHHHHHHHHHcCCeEEEEECCCCchhh
Confidence 78999999999999999999999999999999999 99999 4789999999999999999999999999999
Q ss_pred hHHH-HHHHHhCCCceEEEcchHHHHHhh--cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 239 GHIL-AKELDKKGLKAIVITDSAVFAMIS--RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 239 G~~~-a~~L~~~GI~vt~I~Dsav~~~m~--~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
|..| |++|.+.||+||+|+|++++++|+ +||+||+|||+|++||+++||+|||++|++||+|+|||||+|+++||++
T Consensus 207 G~rlta~eL~~~GI~vtlI~Dsav~~~M~~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap~~t~d~ 286 (356)
T PRK08334 207 GARLSAWEYHYDGIPLKLISDNMAGFVMQQGKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVAPLSTIDM 286 (356)
T ss_pred HHHHHHHHHHHCCCCEEEEehhHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEcccCccCC
Confidence 9755 899999999999999999999997 7999999999999999999999999999999999999999999999998
Q ss_pred cCCCCccccccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHHHHHHHhcC
Q 045642 316 LYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRLIADYYS 394 (406)
Q Consensus 316 ~~~~d~~~i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~~ll~e~y~ 394 (406)
.++.+.. +++|.++|.|++.+++... .++++++||+||||||+|||+||||.|+++|++... ++++++
T Consensus 287 ~~~~~~~-i~iE~r~~~ev~~~~~~~~---------~~~~~v~NPaFDvTPp~lIt~iITE~Gv~~P~~~~~-~~~~~~ 354 (356)
T PRK08334 287 SLKSGKE-IPIEERSPEEVLTCGGCRI---------APDVDVYNPAFDVTPHKYLTGIITDRGVVWPPFERN-LKKLFE 354 (356)
T ss_pred CCCCCcc-cccccCChHHheeccCccc---------CCCcceecccccCCCHHHCCEEEcCCCccCCchHHH-HHHHhc
Confidence 7766544 4899999999997755211 124899999999999999999999999999997664 455554
No 14
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=1.8e-58 Score=453.49 Aligned_cols=276 Identities=23% Similarity=0.299 Sum_probs=236.8
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHh
Q 045642 7 LVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIRE 86 (406)
Q Consensus 7 ~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~Ire 86 (406)
.+++.+..||.++|+|+.+++.+++..|.-.... ...+.....+|..+||+.++|+|+++|+....
T Consensus 41 ~~~~~~~aI~~m~vRGAp~ig~~aa~g~~l~~~~------------~~~~~~~~~~L~~~RPtavnL~~a~~~~~~~~-- 106 (329)
T PRK06371 41 NSDDVAYAIKNMVVRGAPAIGVTAAYGLAMASKN------------GENMDEAVEKIRSTRPTAYDLFKAIRYMNSNE-- 106 (329)
T ss_pred CHHHHHHHHHhCeecChHHHHHHHHHHHHHHHHh------------HHHHHHHHHHHHhcCcchhhHHHHHHHHHhhc--
Confidence 4678899999999999999999999888553332 15577888999999999999999999984310
Q ss_pred hccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHHH
Q 045642 87 EDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKK 166 (406)
Q Consensus 87 e~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 166 (406)
. +
T Consensus 107 --------~----------~------------------------------------------------------------ 108 (329)
T PRK06371 107 --------F----------D------------------------------------------------------------ 108 (329)
T ss_pred --------C----------c------------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccCh--------HHHHHHHHHHHHcCCceEEEEecCCCCcc
Q 045642 167 LKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHS--------KFVKEFLCAAKEKKRSFEVFIADGAPKFE 238 (406)
Q Consensus 167 ~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S--------~tV~~~L~~A~~~~~~f~ViV~EsrP~~e 238 (406)
.+.++++.+|...++++|+++|.++|++|++|||||+| .|++.+|+.|+++|++|+|||+||||.+|
T Consensus 109 -----~~~a~~~~~e~~~~~~~I~~~g~~~I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~q 183 (329)
T PRK06371 109 -----MNAARRYAMEIIGRSKKIGEYGNELIKNGARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQ 183 (329)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEECCCCCcch
Confidence 13344566777778899999999999999999999976 35789999999999999999999999999
Q ss_pred hH-HHHHHHHhCCCceEEEcchHHHHHhhc--CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 239 GH-ILAKELDKKGLKAIVITDSAVFAMISR--VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 239 G~-~~a~~L~~~GI~vt~I~Dsav~~~m~~--vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
|. ++|++|.+.||+|++|+|++++++|++ ||+||+|||+|++||+++||+|||++|++||+|+||||||||+++|..
T Consensus 184 G~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~t~d~ 263 (329)
T PRK06371 184 GARLTAWELAQEGIDHAIIADNAAGYFMRKKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAPGSTFDF 263 (329)
T ss_pred HHHHHHHHHHHCCCCEEEEcccHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEeccccccCC
Confidence 95 579999999999999999999999985 999999999999999999999999999999999999999999777765
Q ss_pred cCCCCccccccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHHHH
Q 045642 316 LYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYRL 388 (406)
Q Consensus 316 ~~~~d~~~i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~~l 388 (406)
.... ...+++|+++|.|++.+.+... ...+++++||.||+|||+|||+||||.|+++|++||++
T Consensus 264 ~~~~-g~~i~iEer~~~ev~~~~g~~~--------~p~~~~v~Np~FDvTP~elIt~iITE~Gv~~p~~i~~~ 327 (329)
T PRK06371 264 SIKS-GDEIPIEERDENEVLEINGCRI--------GPQESHARNPAFDVTPNEYVTGFITEYGIFKPNELWKL 327 (329)
T ss_pred CCCC-cCccccccCCHHHeeccCCeec--------CCCCccccCcCccCCCHHHCCEEEccCCccChHHhhhc
Confidence 4333 3446899999999997755211 12348899999999999999999999999999999985
No 15
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-55 Score=406.51 Aligned_cols=299 Identities=27% Similarity=0.437 Sum_probs=257.5
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHh
Q 045642 7 LVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIRE 86 (406)
Q Consensus 7 ~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~Ire 86 (406)
.|+.|...++.+.-. ..++++++.|..+++. .+..|+.+|.+.++.....|.+..++..++.-...-+++++-.
T Consensus 13 iie~f~~~l~eDpd~---a~~vAAIraL~~vL~~---s~a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr 86 (313)
T KOG1466|consen 13 IIEYFLSFLQEDPDL---AMAVAAIRALLEVLRR---SQATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTR 86 (313)
T ss_pred HHHHHHHHHhcCchh---hhHHHHHHHHHHHHhh---cccchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHh
Confidence 466777777776543 4677778888888888 8999999999999999999999999998888777777666533
Q ss_pred hccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHHH
Q 045642 87 EDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKK 166 (406)
Q Consensus 87 e~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 166 (406)
. +|+. ..+-++
T Consensus 87 ~-----------------------------------------------slld----------------------~~Df~~ 97 (313)
T KOG1466|consen 87 A-----------------------------------------------SLLD----------------------YEDFEQ 97 (313)
T ss_pred h-----------------------------------------------hhhh----------------------hhHHHH
Confidence 1 0000 112378
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHH
Q 045642 167 LKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKEL 246 (406)
Q Consensus 167 ~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L 246 (406)
+|+.+++..+-|++....++..|+..+..+|.||++|||||||+.|.++|..|++++++|+|+|+||||...|.+|+++|
T Consensus 98 ck~~l~erg~~F~~~~~~sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~~~~F~V~vTEsrPd~sG~lm~~~L 177 (313)
T KOG1466|consen 98 CKQHLLERGELFIERARKSRQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQNKKRFRVYVTESRPDGSGKLMAKEL 177 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHhcCceEEEEEecCCCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccccCCCCcccccc
Q 045642 247 DKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLN 326 (406)
Q Consensus 247 ~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~~~d~~~i~~ 326 (406)
.+.|||||++.|||++|.|.+||+|++|||+|..|||++|++|||++|++||+.++||||++|+|||.+.||+++.++++
T Consensus 178 ~~~~IPvtlvlDSaVgyvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES~KFvRlfPLnQ~Dlp~ 257 (313)
T KOG1466|consen 178 KKLGIPVTLVLDSAVGYVMERVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAESHKFVRLFPLNQKDLPP 257 (313)
T ss_pred HhcCCCeEEEehhhHHHHHhhccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeeccceeeeccCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998665
Q ss_pred ccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHHH-HHHHh
Q 045642 327 EMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYR-LIADY 392 (406)
Q Consensus 327 e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~~-ll~e~ 392 (406)
+.+ | +.|.. ..++ -..+...+|..|||||+|||++||++|+++|+.|.. +++-|
T Consensus 258 ~~~-p---~~f~~--~~~~------~~~~~~e~p~vDYTpPeyiTlL~TDLGvltPSaVsdELIKlY 312 (313)
T KOG1466|consen 258 ALP-P---FKFSR--PVPE------REDVEREHPTVDYTPPEYLTLLFTDLGVLTPSAVSDELIKLY 312 (313)
T ss_pred ccC-C---cccCC--CCCc------HHhhhhcCCCcccChHHHHHHHHhhccccChhhhhHHHHHhh
Confidence 532 2 22221 1111 113777889999999999999999999999999985 55544
No 16
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-54 Score=410.33 Aligned_cols=296 Identities=25% Similarity=0.358 Sum_probs=261.7
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Q 045642 6 ALVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPT-ASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHII 84 (406)
Q Consensus 6 ~~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~-~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~I 84 (406)
..+++....||+++++|+.+++..++--+.--... .+ .++.++++..+....+.|...||+.+.+.+++.|+++..
T Consensus 32 ~~~~dva~AIk~M~VRGAPAIgv~AayG~alaa~~---~~~~~~~~e~~~~le~a~~~l~~tRPTAvNLfwal~rm~~~~ 108 (346)
T COG0182 32 KTYEDVAEAIKDMVVRGAPAIGVAAAYGLALAARE---SKNDSKGEEFIEALEKAAETLKSTRPTAVNLFWALDRMLNAA 108 (346)
T ss_pred ccHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHh---cccccchHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Confidence 45678899999999999999999998666554444 44 345799999999999999999999999999999998876
Q ss_pred HhhccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchH
Q 045642 85 REEDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSA 164 (406)
Q Consensus 85 ree~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 164 (406)
.+.. +.
T Consensus 109 ~~~~--------------------------------------------------------------------------~v 114 (346)
T COG0182 109 KEAI--------------------------------------------------------------------------EV 114 (346)
T ss_pred hhcc--------------------------------------------------------------------------ch
Confidence 5431 02
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccC--------hHHHHHHHHHHHHcCCceEEEEecCCCC
Q 045642 165 KKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGH--------SKFVKEFLCAAKEKKRSFEVFIADGAPK 236 (406)
Q Consensus 165 ~~~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~--------S~tV~~~L~~A~~~~~~f~ViV~EsrP~ 236 (406)
++.|+.+.+.+.++.+|....+..|+++++++|.+|+.||||++ -.|....++.|+++|+..+||+.|+||.
T Consensus 115 ~~~~~~~~~eA~~i~~ED~e~n~~iG~~G~~ll~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~gk~i~v~a~ETRP~ 194 (346)
T COG0182 115 KEPKESILQEAEEIAEEDLEANRAIGENGAELLPDGDTVLTHCNAGALATVGYGTALGVIRSAHEEGKDIRVFADETRPY 194 (346)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEeeecCCceeecCccchHHHHHHHHHCCCeeEEEeCCCccc
Confidence 55788899889999988888899999999999999999999875 4578999999999999999999999999
Q ss_pred cch-HHHHHHHHhCCCceEEEcchHHHHHhhc--CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccc
Q 045642 237 FEG-HILAKELDKKGLKAIVITDSAVFAMISR--VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHEL 313 (406)
Q Consensus 237 ~eG-~~~a~~L~~~GI~vt~I~Dsav~~~m~~--vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~ 313 (406)
+|| +++|++|.+.|||+|+|+|++++++|++ +|+|++|||+|..||.+.||+|||++|++||+|||||||++|.-.|
T Consensus 195 lQGARLTawEL~~~GIpvtLItD~aag~~M~~g~Id~viVGADRI~~nGdvaNKIGTY~lAvlAk~~gIPFyVaAP~sTi 274 (346)
T COG0182 195 LQGARLTAWELVQDGIPVTLITDNAAGHLMQQGMIDAVIVGADRIAANGDVANKIGTYQLAVLAKHHGIPFYVAAPLSTI 274 (346)
T ss_pred cccceeeHHHHhhcCCceEEEeccHHHHHHHhCCCcEEEEccceeecCCcchhhhhHHHHHHHHHHcCCCeEEEcccCcc
Confidence 999 7999999999999999999999999976 9999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHHH
Q 045642 314 CSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYR 387 (406)
Q Consensus 314 ~~~~~~d~~~i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~~ 387 (406)
+.....+ ..|++|+|||.|++.+++....+ .++.++||.||+|||+|||+||||.|++.|.....
T Consensus 275 D~~~~~G-~~I~IEER~p~Ev~~v~g~riap--------~~v~~yNPAFDvTP~~lItgIITEkGv~~p~~~~~ 339 (346)
T COG0182 275 DFELKSG-EDIPIEERDPEEVLEVGGVRIAP--------EGVEAYNPAFDVTPPELITGIITEKGVFTPPFEEN 339 (346)
T ss_pred ccccCCC-CccceeecCHHHeEeeccEEeCC--------CCccccCccccCChHHhcceeeeccceecCchhhh
Confidence 8866554 44699999999999887743333 34999999999999999999999999999985443
No 17
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=3.7e-54 Score=409.43 Aligned_cols=250 Identities=24% Similarity=0.320 Sum_probs=207.4
Q ss_pred HHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhccCC
Q 045642 12 PSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIREEDLSP 91 (406)
Q Consensus 12 ~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~Iree~~~~ 91 (406)
+..++.++.+||.+++.+++++||. . . . + ..+++.|..++|.|..+.|+..|++. .
T Consensus 3 ~~~~~~d~~~Gs~~~~~~~l~~l~~---~----~-~---~-----~~~~~~l~~~~~~Ma~~~n~~~~~~~----~---- 58 (253)
T PRK06372 3 VKDLLSDNASGSADVAFKIISFFSH---N----D-I---D-----ENIIKDLKNYFFGMGLVRNVCDSIIS----G---- 58 (253)
T ss_pred hHHhhcCccccHHHHHHHHHHHHhc---c----c-h---h-----hhHHHHHHHhCcchHHHHHHHHHHHc----c----
Confidence 3578999999999999999999986 2 1 0 0 23888899999999999999999951 1
Q ss_pred CcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHHHHHHHH
Q 045642 92 LTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKKLKSEL 171 (406)
Q Consensus 92 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~k~~l 171 (406)
. + .+.++
T Consensus 59 ---~----------~-------------------------------------------------------~~~~~----- 65 (253)
T PRK06372 59 ---P----------N-------------------------------------------------------LRPKN----- 65 (253)
T ss_pred ---C----------c-------------------------------------------------------CCHHH-----
Confidence 0 0 01122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCC
Q 045642 172 IKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGL 251 (406)
Q Consensus 172 ~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI 251 (406)
|...++.+.+.|+++|.++| +|++|||||+|++|++||..+. +.|+|||+||||.+||+.||++|++.||
T Consensus 66 ------~~~~~~~~~~~~~~~A~~~i-~~dvILT~s~S~~v~~~l~~~~---~~~~V~v~ESrP~~eG~~~a~~L~~~GI 135 (253)
T PRK06372 66 ------LKLGIEKHEKMAIEHAKPLF-NDSVIGTISSSQVLKAFISSSE---KIKSVYILESRPMLEGIDMAKLLVKSGI 135 (253)
T ss_pred ------HHHHHHHHHHHHHHHHHhhc-CCCEEEEeCCcHHHHHHHHhcC---CCCEEEEecCCCchHHHHHHHHHHHCCC
Confidence 22344477788999999999 6799999999999999997654 4489999999999999999999999999
Q ss_pred ceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccccCCCCccccccccCCc
Q 045642 252 KAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCP 331 (406)
Q Consensus 252 ~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~~~d~~~i~~e~~~p 331 (406)
+|++|+|++++++|++||+|++|||+|++||+++||+||+++|++||+|+|||||+|++|||++.++.+... ..+.. |
T Consensus 136 ~vtli~Dsa~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s~Kf~~~~~~~~~~-~~~~~-~ 213 (253)
T PRK06372 136 DVVLLTDASMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISMKIERNFLYSTYP-NFKNH-P 213 (253)
T ss_pred CEEEEehhHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeeccccCCCCcccccc-ccccc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999987654331 00000 0
Q ss_pred ccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHH
Q 045642 332 SELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIY 386 (406)
Q Consensus 332 ~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~ 386 (406)
. ..+ ..+++++||+||+|||+|||+||||.|+++|++|+
T Consensus 214 ~--------~~~--------~~~l~v~Np~FD~TPpelI~~iITE~Gi~~pssV~ 252 (253)
T PRK06372 214 C--------SEW--------NIDIPCINRYFDKTPPDLIDYYINENGFVKPSDVN 252 (253)
T ss_pred c--------ccC--------CCCCceeCcCcCCCCHHHCCEEEcCCCccccccCC
Confidence 0 001 12388999999999999999999999999999863
No 18
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-47 Score=358.15 Aligned_cols=299 Identities=25% Similarity=0.300 Sum_probs=258.1
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHh
Q 045642 7 LVSDLPSKLRKRRVQGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIAANPVELAVGNIVRHVLHIIRE 86 (406)
Q Consensus 7 ~i~~l~~~l~~~~i~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~a~P~~~~i~Nivrrvl~~Ire 86 (406)
-+++-++-+|.+|++|+.++|+.....|.--|.. ..+.+.+.+.+.|..-.++|.++||+.+.+.|..+.+..++.+
T Consensus 32 ~v~d~~~vIk~MqVRGAPaIAivg~Lslaveiq~---~~~~~~ds~~~~i~~kl~fLvssRPTAVnl~~aa~~lk~i~~~ 108 (354)
T KOG1468|consen 32 GVSDAWAVIKSMQVRGAPAIAIVGSLSLAVEIQK---KGFPGSDSLKEFIINKLNFLVSSRPTAVNLANAANELKPIAAS 108 (354)
T ss_pred chhHHHHHHHHHhhcCccHHHHHHHHHHHHHHhh---ccCCchHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHh
Confidence 4677899999999999999999988777765655 5567777899999999999999999999999999999988866
Q ss_pred hccCCCcccccccccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHHH
Q 045642 87 EDLSPLTDIVGELKLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKK 166 (406)
Q Consensus 87 e~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 166 (406)
+.. +.+.
T Consensus 109 ~~~-------------------------------------------------------------------------~~~~ 115 (354)
T KOG1468|consen 109 EDK-------------------------------------------------------------------------SEKA 115 (354)
T ss_pred hhh-------------------------------------------------------------------------hHHH
Confidence 521 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cC-cEEEeccC--------hHHHHHHHHHHHHcCCceEEEEec
Q 045642 167 LKSELIKAVNELIEDINTCREGIAEQAMELIH-----QN-EVILTLGH--------SKFVKEFLCAAKEKKRSFEVFIAD 232 (406)
Q Consensus 167 ~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~-----~g-~~ILT~g~--------S~tV~~~L~~A~~~~~~f~ViV~E 232 (406)
.++.+++..++++++...-+..|+.++++++- +| -+||||++ ..|.+.+++..++.|+--+|||+|
T Consensus 116 ~~~~~~~~~e~ml~~dl~~N~~ig~~g~~~Llq~~~~~~kltVlThCNTGSLATagyGTALGVIRsLh~~grLehvyctE 195 (354)
T KOG1468|consen 116 KREKCISYTEDMLEKDLADNRAIGDNGAKELLQAVKDKGKLTVLTHCNTGSLATAGYGTALGVIRSLHSLGRLEHVYCTE 195 (354)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcCCCCceEEEEeecCCchhhcccchHHHHHHHHHhcCCcceEEecc
Confidence 78889999999998877778899999988773 23 37999754 458999999999999999999999
Q ss_pred CCCCcch-HHHHHHHHhCCCceEEEcchHHHHHhh--cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecC
Q 045642 233 GAPKFEG-HILAKELDKKGLKAIVITDSAVFAMIS--RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVAS 309 (406)
Q Consensus 233 srP~~eG-~~~a~~L~~~GI~vt~I~Dsav~~~m~--~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ae 309 (406)
+||++|| |++|.+|.-..||.|+|+||++++.|+ +||.|++|||+|..||...||+|||++|++|||||+||||++|
T Consensus 196 TRPyNQGsRLTA~ELvhekiPatLItDS~vA~~m~~~~vdavvvGADrVarNGDTANKIGTy~LAv~aKhhgipFyvaaP 275 (354)
T KOG1468|consen 196 TRPYNQGSRLTAFELVHEKIPATLITDSMVAAAMKNHQVDAVVVGADRVARNGDTANKIGTYQLAVLAKHHGIPFYVAAP 275 (354)
T ss_pred cccCCcccchhhHHHHhccCcchhhhhHHHHHHHhcCCCCEEEEcccceeccCcchhhhhhhHHHHHHHhcCCceEEecc
Confidence 9999999 899999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCccccccccCCcccccccCCcccccccCcCCCCCcccccCCcceecCCCCccEEEeCCCCCCChhHHH
Q 045642 310 THELCSLYPHNLEVLLNEMRCPSELLNFEEFSDCIDYGIASSSSLLHVVNPAFDYVPPELIRLFVTDIGGYSPSYIYR 387 (406)
Q Consensus 310 s~K~~~~~~~d~~~i~~e~~~p~ev~~~~~~~~~~~~~~~~~~~~v~v~np~fD~tPp~lIt~iITE~G~~~Ps~v~~ 387 (406)
...+......+. .|.+|+|+|.|.....|.. ......+++.||||+||+||++||++||||.|+++|.....
T Consensus 276 ~tsid~~l~tG~-eIiIEERp~~Em~~v~gg~-----~v~Iaapgi~vwnPAFDvTPa~LItgIiTe~g~f~~~~~~~ 347 (354)
T KOG1468|consen 276 FTSIDLSLATGD-EIIIEERPPAEMTHVTGGE-----GVRIAAPGINVWNPAFDVTPAELITGIITEKGVFTPEELEE 347 (354)
T ss_pred ccccccccCCCC-eeEEeecCchHheeecCCc-----ceEecCCCCCccCccccCCHHHHHHHHhhhccccChHHhcc
Confidence 888876665544 4689999999998776411 11223466999999999999999999999999999997653
No 19
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=97.97 E-value=0.00011 Score=69.47 Aligned_cols=119 Identities=20% Similarity=0.254 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCC--ceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHH
Q 045642 187 EGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKR--SFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAM 264 (406)
Q Consensus 187 ~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~--~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~ 264 (406)
+.|++.|+++|++|++|. ++.++|+..+.+...+..+ .+.+.++- .+..++..|.+.|+++..+ .-
T Consensus 3 ~~IA~~A~~~I~~g~~I~-ldsGST~~~~~~~L~~~~~~~~l~itvVt-----~S~~~a~~l~~~gi~v~~l------~~ 70 (218)
T TIGR00021 3 RAAAEAAAEYVEDGMVVG-LGTGSTVAYFIEALGERVKQEGLDIVGVP-----TSKQTAELARELGIPLSSL------DE 70 (218)
T ss_pred HHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHHhhhccCCCEEEEe-----CCHHHHHHHHHCCCCEEcH------hH
Confidence 578899999999999987 6778888888777764322 12333321 2356778888889998622 22
Q ss_pred hhcCCEEEEcceeEeeCCCcccccchHHH-HHHHhhCCCceEEecCCccccccC
Q 045642 265 ISRVNMVIVGVHAVMANGGVIAPAGLHVL-ALAAKKHDVPFVVVASTHELCSLY 317 (406)
Q Consensus 265 m~~vd~VllGAdav~~nG~vvnk~GT~~l-Al~Ak~~~vPv~V~aes~K~~~~~ 317 (406)
+.++|..+.|||.|-.+++++---|...+ --.......-+++++++-||.+..
T Consensus 71 ~~~iDiafdGaD~id~~~~~ikg~g~a~~~eKiia~~A~~~i~l~D~sK~~~~l 124 (218)
T TIGR00021 71 VPELDLAIDGADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADESKLVDKL 124 (218)
T ss_pred CCccCEEEECCCeECCCCCEecccHHHHHHHHHHHHhhCcEEEEEEchhhhccc
Confidence 45799999999999999988532333222 112333456899999999998743
No 20
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=97.94 E-value=0.00014 Score=68.90 Aligned_cols=120 Identities=13% Similarity=0.222 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCC-ceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHH
Q 045642 185 CREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKR-SFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFA 263 (406)
Q Consensus 185 ~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~-~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~ 263 (406)
..+.|++.|+++|.+|++|. +|.++|+..+++...+..+ .+.+.++- .....+..|.+.||++..+.
T Consensus 6 ~K~~IA~~Aa~lI~dg~~Ig-LgsGST~~~l~~~L~~~~~~~~~itvVt-----~S~~~a~~l~~~gi~v~~l~------ 73 (220)
T PRK00702 6 LKKAAAEAAAEYVEDGMIVG-LGTGSTAAYFIDALGERVKEGLIIGGVP-----TSEASTELAKELGIPLFDLN------ 73 (220)
T ss_pred HHHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHhhhccCCCEEEEC-----CcHHHHHHHHhCCCeEEcHH------
Confidence 45688999999999999986 6888899888887764321 12333331 23456777777899876222
Q ss_pred HhhcCCEEEEcceeEeeCCCcccccchHHH--HHHHhhCCCceEEecCCccccccC
Q 045642 264 MISRVNMVIVGVHAVMANGGVIAPAGLHVL--ALAAKKHDVPFVVVASTHELCSLY 317 (406)
Q Consensus 264 ~m~~vd~VllGAdav~~nG~vvnk~GT~~l--Al~Ak~~~vPv~V~aes~K~~~~~ 317 (406)
-+.++|..|.|||.|-.+++++-.-|-..+ -++|+..+ -++++++.-||.+..
T Consensus 74 ~~~~iD~afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~-~~vil~D~sK~v~~l 128 (220)
T PRK00702 74 EVDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAK-RFICIVDESKLVDVL 128 (220)
T ss_pred HCCccCEEEECCCeECCCCCcEECcHHHHHHHHHHHHhcC-cEEEEEEcchhhhhc
Confidence 245799999999999999888877554443 34444433 589999999998754
No 21
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=97.80 E-value=0.00076 Score=65.25 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHh-CC-CceEEEc-----c
Q 045642 186 REGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDK-KG-LKAIVIT-----D 258 (406)
Q Consensus 186 ~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~-~G-I~vt~I~-----D 258 (406)
.+.|++.|+.+|.+|++|+ ++.|+|+..+.+... ..++++|+. .+...|..|.+ .+ +++.++- +
T Consensus 78 K~~IA~~Aa~~I~~g~tIf-ld~GtT~~~la~~L~-~~~~ltVvT-------nsl~ia~~l~~~~~~~~v~l~GG~~~~~ 148 (256)
T PRK10434 78 KELIAEAAVSLIHDGDSII-LDAGSTVLQMVPLLS-RFNNITVMT-------NSLHIVNALSELDNEQTILMPGGTFRKK 148 (256)
T ss_pred HHHHHHHHHhhCCCCCEEE-EcCcHHHHHHHHHhc-cCCCeEEEE-------CCHHHHHHHhhCCCCCEEEEECCEEeCC
Confidence 5789999999999999999 577778877777765 223455443 24456777775 33 5555321 1
Q ss_pred --h----HHHHHhh--cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 259 --S----AVFAMIS--RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 259 --s----av~~~m~--~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
+ ..-..+. ++|+.++||++|-.++|+....-...+--++-.....+|++|++-||..
T Consensus 149 ~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~~~~~k~~~~~~a~~~illaD~sKf~~ 213 (256)
T PRK10434 149 SASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKFGR 213 (256)
T ss_pred CCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHcCcEEEEECCcccCC
Confidence 1 1122233 4999999999999888887543334555566667899999999999854
No 22
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=97.75 E-value=0.00028 Score=66.47 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcC----CceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHH
Q 045642 187 EGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKK----RSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVF 262 (406)
Q Consensus 187 ~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~----~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~ 262 (406)
+.|++.|+++|.+|++|. ++.++|+..+.+...+.. ++++|+ +- ....+..|.+.|+++..+-
T Consensus 3 ~~IA~~A~~~I~~g~~I~-ldsGST~~~l~~~L~~~~~~~~~~itvV-Tn------S~~~a~~l~~~~i~vi~lg----- 69 (213)
T cd01398 3 RAAARAAVDYVEDGMVIG-LGTGSTVAYFIEALGERVREEGLNIVGV-PT------SFQTEELARELGIPLTDLD----- 69 (213)
T ss_pred HHHHHHHHHhCCCCCEEE-ECchHHHHHHHHHHHHhhhccCCCEEEE-eC------cHHHHHHHHhCCCeEEeCC-----
Confidence 578999999999999887 688889888887776432 234443 22 2345667777788876655
Q ss_pred HHhhcCCEEEEcceeEeeCCCcccccchHHHHH-HHhhCCCceEEecCCccccccC
Q 045642 263 AMISRVNMVIVGVHAVMANGGVIAPAGLHVLAL-AAKKHDVPFVVVASTHELCSLY 317 (406)
Q Consensus 263 ~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl-~Ak~~~vPv~V~aes~K~~~~~ 317 (406)
---++|+.++|||.|-.++.++..-|-..+-- +......-+|++++.-||....
T Consensus 70 -~~~~~D~af~Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l 124 (213)
T cd01398 70 -EVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERL 124 (213)
T ss_pred -CccccCEEEECCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccC
Confidence 12269999999999998876654444433332 2334567889999999998754
No 23
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=97.59 E-value=0.0016 Score=63.44 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHh-CCCceEEEc-------
Q 045642 186 REGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDK-KGLKAIVIT------- 257 (406)
Q Consensus 186 ~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~-~GI~vt~I~------- 257 (406)
.+.|++.|+++|.+|++|+ ++.++|+..+.+... ..++++|+.- +...|..|.. .++++.++-
T Consensus 93 K~~IA~~Aa~~I~dgd~If-ld~GtT~~~la~~L~-~~~~ltVvTn-------sl~ia~~l~~~~~~~v~llGG~~~~~~ 163 (269)
T PRK09802 93 KRSVAKAAVELIQPGHRVI-LDSGTTTFEIARLMR-KHTDVIAMTN-------GMNVANALLEAEGVELLMTGGHLRRQS 163 (269)
T ss_pred HHHHHHHHHhhCCCCCEEE-ECCchHHHHHHHhcC-cCCCeEEEeC-------CHHHHHHHHhCCCCEEEEECCEEecCC
Confidence 4689999999999999999 577778777777764 3345666542 3456777764 466655321
Q ss_pred ----chHHHHHhh--cCCEEEEcceeEeeCCCccc-ccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 258 ----DSAVFAMIS--RVNMVIVGVHAVMANGGVIA-PAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 258 ----Dsav~~~m~--~vd~VllGAdav~~nG~vvn-k~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
....-..+. ++|+.|+||++|-.++|+.. ..--..+--++-....-+|++|++-||..
T Consensus 164 ~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~sKf~~ 228 (269)
T PRK09802 164 QSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNR 228 (269)
T ss_pred CceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEeccccCC
Confidence 112223333 59999999999998888764 44556666666677788899999999853
No 24
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=97.47 E-value=0.0047 Score=59.68 Aligned_cols=121 Identities=13% Similarity=0.195 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHh-CCCceEEE-------c
Q 045642 186 REGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDK-KGLKAIVI-------T 257 (406)
Q Consensus 186 ~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~-~GI~vt~I-------~ 257 (406)
.+.|++.|+++|++|++|+ ++.|+|+..+.+... ..++++|+- .+...|..|.. .++++.++ .
T Consensus 78 K~~IA~~Aa~~I~~g~tIf-lD~GtT~~~la~~L~-~~~~ltVvT-------Nsl~ia~~l~~~~~~~villGG~~~~~~ 148 (252)
T PRK10906 78 KERIARKVASQIPNGATLF-IDIGTTPEAVAHALL-NHSNLRIVT-------NNLNVANTLMAKEDFRIILAGGELRSRD 148 (252)
T ss_pred HHHHHHHHHhhCCCCCEEE-EcCcHHHHHHHHHhc-CCCCcEEEE-------CcHHHHHHHhhCCCCEEEEECCEEecCC
Confidence 4689999999999999999 466777777777665 333444442 23445666664 44554432 1
Q ss_pred chHHH----HHhh--cCCEEEEcceeEeeCCCccc-ccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 258 DSAVF----AMIS--RVNMVIVGVHAVMANGGVIA-PAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 258 Dsav~----~~m~--~vd~VllGAdav~~nG~vvn-k~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
.+.++ ..+. ++|+.++||++|-.++|+.. ...-..+--++-....-+|++|++-||..
T Consensus 149 ~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~~ 213 (252)
T PRK10906 149 GGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGR 213 (252)
T ss_pred CccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhCC
Confidence 11222 2223 49999999999998877654 44556666666667788899999999953
No 25
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=97.32 E-value=0.0034 Score=56.44 Aligned_cols=123 Identities=16% Similarity=0.289 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhC-CCceEEE-----c-
Q 045642 185 CREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKK-GLKAIVI-----T- 257 (406)
Q Consensus 185 ~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~-GI~vt~I-----~- 257 (406)
..++|++.|+++|++|++|. ++.++|+..+.+... ..++++|+- .....|..|.+. ++++.++ +
T Consensus 5 ~K~~IA~~A~~~I~~~~~If-ld~GtT~~~la~~L~-~~~~ltVvT-------nsl~ia~~l~~~~~~~vi~~GG~~~~~ 75 (161)
T PF00455_consen 5 EKRAIARKAASLIEDGDTIF-LDSGTTTLELAKYLP-DKKNLTVVT-------NSLPIANELSENPNIEVILLGGEVNPK 75 (161)
T ss_pred HHHHHHHHHHHhCCCCCEEE-EECchHHHHHHHHhh-cCCceEEEE-------CCHHHHHHHHhcCceEEEEeCCEEEcC
Confidence 34689999999999999988 577778888888876 333454442 234567777775 4444321 1
Q ss_pred -----chHHHHHhh--cCCEEEEcceeEeeCCCcc-cccchHHHHHHHhhCCCceEEecCCcccccc
Q 045642 258 -----DSAVFAMIS--RVNMVIVGVHAVMANGGVI-APAGLHVLALAAKKHDVPFVVVASTHELCSL 316 (406)
Q Consensus 258 -----Dsav~~~m~--~vd~VllGAdav~~nG~vv-nk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~ 316 (406)
....-..++ ++|+.++|+++|-.++|+. ....-..+--+.-.....+|+++++-||...
T Consensus 76 ~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~~~ 142 (161)
T PF00455_consen 76 SLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFGRN 142 (161)
T ss_pred CCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcCCe
Confidence 112222233 5999999999999976666 4666677777777788899999999999753
No 26
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=97.30 E-value=0.0047 Score=59.61 Aligned_cols=119 Identities=12% Similarity=0.027 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHh-CCCceEEE--------
Q 045642 186 REGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDK-KGLKAIVI-------- 256 (406)
Q Consensus 186 ~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~-~GI~vt~I-------- 256 (406)
.+.|++.|+.+|++|++|+ ++.++|+..+.+... . ++++|+. .+...|..|.+ .++++.++
T Consensus 80 K~~IA~~Aa~~I~~g~~If-ld~GsT~~~la~~L~-~-~~ltVvT-------nsl~ia~~l~~~~~~~v~l~GG~~~~~~ 149 (251)
T PRK13509 80 KVRIAKAASQLCNPGESVV-INCGSTAFLLGRELC-G-KPVQIIT-------NYLPLANYLIDQEHDSVIIMGGQYNKSQ 149 (251)
T ss_pred HHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHhC-C-CCeEEEe-------CCHHHHHHHHhCCCCEEEEECCeEcCCc
Confidence 4689999999999999998 466777777666664 2 2444443 23355667764 34444321
Q ss_pred ---cchHHHHHhh--cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 257 ---TDSAVFAMIS--RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 257 ---~Dsav~~~m~--~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
....+ ..+. ++|+.++||++|-.+|-.........+--++-....-+|++|++-||..
T Consensus 150 ~~~~G~~~-~~l~~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~~s~~~illaDssKfg~ 212 (251)
T PRK13509 150 SITLSPQG-SENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGE 212 (251)
T ss_pred ceeECHHH-HHHHhCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHHHhCcEEEEEcccccCc
Confidence 11222 3444 3899999999998765333444445555555566788899999999954
No 27
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=97.16 E-value=0.016 Score=55.52 Aligned_cols=121 Identities=16% Similarity=0.218 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHh-CCCceEEE-------
Q 045642 185 CREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDK-KGLKAIVI------- 256 (406)
Q Consensus 185 ~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~-~GI~vt~I------- 256 (406)
..+.|++.|+++|.+|++|+ ++.++|+..+.+... . ++++|+. .+...|..|.. .++++.++
T Consensus 79 ~K~~IA~~Aa~lI~~gd~If-ld~GtT~~~l~~~L~-~-~~ltVvT-------Ns~~ia~~l~~~~~~~vil~GG~~~~~ 148 (240)
T PRK10411 79 HKADIAREALAWIEEGMVIA-LDASSTCWYLARQLP-D-INIQVFT-------NSHPICQELGKRERIQLISSGGTLERK 148 (240)
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcCcHHHHHHHHhhC-C-CCeEEEe-------CCHHHHHHHhcCCCCEEEEECCEEeCC
Confidence 34689999999999999998 566778777666664 2 2444443 23445666663 45554322
Q ss_pred ----cchHHHHHhh--cCCEEEEcceeEeeCCCccc-ccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 257 ----TDSAVFAMIS--RVNMVIVGVHAVMANGGVIA-PAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 257 ----~Dsav~~~m~--~vd~VllGAdav~~nG~vvn-k~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
........++ ++|++++||++|-.+||+.. ..=-..+-.++-....-+|+++++-||..
T Consensus 149 ~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf~~ 214 (240)
T PRK10411 149 YGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNR 214 (240)
T ss_pred CCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEeccccCC
Confidence 1112222233 59999999999988777765 44445555666677888899999999964
No 28
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=96.64 E-value=0.024 Score=54.67 Aligned_cols=121 Identities=12% Similarity=0.052 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHh-CCCceEEEc-------
Q 045642 186 REGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDK-KGLKAIVIT------- 257 (406)
Q Consensus 186 ~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~-~GI~vt~I~------- 257 (406)
.+.|++.|+++|.+|++|+. +.|+|+..+.+... ..++++|+-- +...+..|.. .++++.++-
T Consensus 79 K~~IA~~Aa~lI~~g~tIfl-D~GtT~~~la~~L~-~~~~ltvvTn-------sl~i~~~l~~~~~~~villGG~~~~~~ 149 (252)
T PRK10681 79 KRRAAQLAATLVEPNQTLFF-DCGTTTPWIIEAID-NELPFTAVCY-------SLNTFLALQEKPHCRAILCGGEFHASN 149 (252)
T ss_pred HHHHHHHHHhhcCCCCEEEE-ECCccHHHHHHhcC-CCCCeEEEEC-------CHHHHHHHhhCCCCEEEEECcEEecCc
Confidence 46899999999999999995 66667777666664 2234544431 3345666764 345544221
Q ss_pred ----chHHHHHhh--cCCEEEEcceeEeeCCCcc-cccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 258 ----DSAVFAMIS--RVNMVIVGVHAVMANGGVI-APAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 258 ----Dsav~~~m~--~vd~VllGAdav~~nG~vv-nk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
....-..+. ++|+.++||++|-..+|+. ...--..+.-+.-.....+|++|++-||..
T Consensus 150 ~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~~a~~~illaD~sKf~~ 214 (252)
T PRK10681 150 AIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGK 214 (252)
T ss_pred ceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHHhhCcEEEEEcccccCc
Confidence 111122233 5999999999998877765 355555666666667888999999999964
No 29
>PLN02384 ribose-5-phosphate isomerase
Probab=96.22 E-value=0.1 Score=50.61 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCc--eE-EEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHH
Q 045642 187 EGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRS--FE-VFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFA 263 (406)
Q Consensus 187 ~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~--f~-ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~ 263 (406)
...+..|++++++|.+ +-.|..+|+..+++...+..+. ++ +.++-| ...++..+.+.||+++-+.+
T Consensus 37 ~~aA~~A~~~V~~gmv-VGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpT-----S~~T~~~a~~~GIpl~~l~~----- 105 (264)
T PLN02384 37 KIAAYKAVEFVESGMV-LGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPT-----SKKTHEQAVSLGIPLSDLDS----- 105 (264)
T ss_pred HHHHHHHHHhccCCCE-EEecchHHHHHHHHHHHHhhhhccccceEEEcC-----cHHHHHHHHHcCCcEecccc-----
Confidence 3466778899999887 4578899999888877654332 33 444433 24667778889999777655
Q ss_pred HhhcCCEEEEcceeEeeCCCcccccchHHHH-HHHhhCCCceEEecCCccccccC
Q 045642 264 MISRVNMVIVGVHAVMANGGVIAPAGLHVLA-LAAKKHDVPFVVVASTHELCSLY 317 (406)
Q Consensus 264 ~m~~vd~VllGAdav~~nG~vvnk~GT~~lA-l~Ak~~~vPv~V~aes~K~~~~~ 317 (406)
.+++|..|=|||-|-+|+.++--=|...+- =+-.....-|+++++.-|+.+..
T Consensus 106 -v~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~~A~~~IiI~DesK~V~~L 159 (264)
T PLN02384 106 -HPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGACKKFVVIVDESKLVKHI 159 (264)
T ss_pred -CCcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHHhcCeEEEEEeCcceeccc
Confidence 568999999999999998777655543322 12222344789999999998743
No 30
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.095 Score=50.63 Aligned_cols=122 Identities=14% Similarity=0.204 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhC-CCceE----------
Q 045642 186 REGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKK-GLKAI---------- 254 (406)
Q Consensus 186 ~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~-GI~vt---------- 254 (406)
...|++.|+.+|++|++|+- ..++|...+..... ..++++|+. .+...|..|... ++.+.
T Consensus 78 K~~IA~~Aa~lI~~g~~ifl-d~GTT~~~la~~L~-~~~~ltviT-------Nsl~ia~~l~~~~~~~vi~~GG~~~~~~ 148 (253)
T COG1349 78 KRAIAKAAATLIEDGDTIFL-DAGTTTLALARALP-DDNNLTVIT-------NSLNIAAALLEKPNIEVILLGGTVRKKS 148 (253)
T ss_pred HHHHHHHHHhhCCCCCEEEE-CCCcHHHHHHHHhC-cCCCeEEEe-------CCHHHHHHHHhCCCCeEEEeCcEEEcCC
Confidence 45799999999999999994 66667777666665 333355553 345557777765 33331
Q ss_pred -EEcchHHHHHhh--cCCEEEEcceeEeeCCCccccc-chHHHHHHHhhCCCceEEecCCcccccc
Q 045642 255 -VITDSAVFAMIS--RVNMVIVGVHAVMANGGVIAPA-GLHVLALAAKKHDVPFVVVASTHELCSL 316 (406)
Q Consensus 255 -~I~Dsav~~~m~--~vd~VllGAdav~~nG~vvnk~-GT~~lAl~Ak~~~vPv~V~aes~K~~~~ 316 (406)
-+.......+++ ++|+.++|+++|-.++|+...- .-..+.-++-....-+|+++.+-||...
T Consensus 149 ~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~sKf~~~ 214 (253)
T COG1349 149 GSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADSSKFGRV 214 (253)
T ss_pred CeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcCCccCCc
Confidence 111222333333 5999999999999998888754 5555666777788889999999999653
No 31
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=95.44 E-value=0.25 Score=47.01 Aligned_cols=119 Identities=15% Similarity=0.209 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCC--ceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHH
Q 045642 186 REGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKR--SFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFA 263 (406)
Q Consensus 186 ~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~--~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~ 263 (406)
.+..+..|++++++|.+ +-.|..+|+..+++...+..+ .+++.++-+. ..++..+.+.||++.-+.+
T Consensus 8 K~~aa~~A~~~V~~gmv-vGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS-----~~t~~~a~~~Gipl~~l~~----- 76 (228)
T PRK13978 8 KLMTLNDVLSQINGDMT-LGIGTGSTMELLLPQMAQLIKERGYNITGVCTS-----NKIAFLAKELGIKICEIND----- 76 (228)
T ss_pred HHHHHHHHHHhCCCCCE-EEeCchHHHHHHHHHHHHHhhccCccEEEEeCc-----HHHHHHHHHcCCcEechhh-----
Confidence 34567788899999887 557899999999887765322 2455544222 3556677788999776655
Q ss_pred HhhcCCEEEEcceeEeeCCCcccccchHHHH-HHHhhCCCceEEecCCcccccc
Q 045642 264 MISRVNMVIVGVHAVMANGGVIAPAGLHVLA-LAAKKHDVPFVVVASTHELCSL 316 (406)
Q Consensus 264 ~m~~vd~VllGAdav~~nG~vvnk~GT~~lA-l~Ak~~~vPv~V~aes~K~~~~ 316 (406)
..++|..|=|||-|-+|+.++--=|...+= =.-......|+++++..|+.+.
T Consensus 77 -~~~iDiaiDGADevd~~lnlIKGgGgal~rEKiva~~A~~~iii~D~sK~v~~ 129 (228)
T PRK13978 77 -VDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQY 129 (228)
T ss_pred -CCceeEEEecCceecCCccEEecCcHHHHHHHHHHHhcCcEEEEEeCcceecc
Confidence 367999999999999998877544433211 1122234478899999999864
No 32
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=95.36 E-value=0.3 Score=46.34 Aligned_cols=119 Identities=17% Similarity=0.248 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCC-ceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHh
Q 045642 187 EGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKR-SFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMI 265 (406)
Q Consensus 187 ~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~-~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m 265 (406)
...+..|++++.+|.+| -.|-.+|+..|++...+..+ .+.+..+-| ...++..+.+.||++.-+.+ .
T Consensus 8 ~~aa~~A~~~v~~gmvi-GlGTGST~~~fI~~Lg~~~~~e~~i~~V~T-----S~~t~~l~~~~GI~v~~l~~------~ 75 (227)
T COG0120 8 KAAAKAALEYVKDGMVI-GLGTGSTAAYFIEALGRRVKGELDIGGVPT-----SFQTEELARELGIPVSSLNE------V 75 (227)
T ss_pred HHHHHHHHHHhcCCCEE-EEcCcHHHHHHHHHHHHhhccCccEEEEeC-----CHHHHHHHHHcCCeecCccc------c
Confidence 45677888999987655 47888999999999874211 244444333 24678888999999887766 5
Q ss_pred hcCCEEEEcceeEeeCCCcccccchHHHH-HHHhhCCCceEEecCCccccccC
Q 045642 266 SRVNMVIVGVHAVMANGGVIAPAGLHVLA-LAAKKHDVPFVVVASTHELCSLY 317 (406)
Q Consensus 266 ~~vd~VllGAdav~~nG~vvnk~GT~~lA-l~Ak~~~vPv~V~aes~K~~~~~ 317 (406)
+.+|..|=|||-|-.++.++---|.+.+= =+-.+..+.|+|+++..|+.+..
T Consensus 76 ~~lDl~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~L 128 (227)
T COG0120 76 DSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEVL 128 (227)
T ss_pred CccceEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhhc
Confidence 67999999999999998888766665432 13334567889999999997643
No 33
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=88.17 E-value=12 Score=38.52 Aligned_cols=144 Identities=16% Similarity=0.138 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--cEEEe-------ccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-
Q 045642 170 ELIKAVNELIEDINTCREGIAEQAMELIHQN--EVILT-------LGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG- 239 (406)
Q Consensus 170 ~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g--~~ILT-------~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG- 239 (406)
.+++..+.|.+.+-..+......+.+.+.+- +.|.+ .+-...+.++..=+..+.++.-+++-.|.-++-+
T Consensus 183 ~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~i~~~Y~~W~~~~~~~~V~l~Y~smyg~T~~ 262 (388)
T COG0426 183 ELLPDMRKYYANLMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKEIVEAYRDWAEGQPKGKVDLIYDSMYGNTEK 262 (388)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHhhhcccCccEEEcCCCceeeCCHHHHHHHHHHHHccCCcceEEEEEecccCCHHH
Confidence 6777778888887777777777777777652 23333 3335666666666654445523444555555444
Q ss_pred --HHHHHHHHhCCCceEEEcc--hHHHHHhh---cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCcc
Q 045642 240 --HILAKELDKKGLKAIVITD--SAVFAMIS---RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHE 312 (406)
Q Consensus 240 --~~~a~~L~~~GI~vt~I~D--sav~~~m~---~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K 312 (406)
+.+|+.|.+.|+.|.++-. +....+++ +++.+++|.-.+. ++..-++++..--+.|..+.....++.++|-
T Consensus 263 ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~~--~~~~p~i~~~l~~v~~~~~~~k~~~vfgS~G 340 (388)
T COG0426 263 MAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTIN--GGAHPPIQTALGYVLALAPKNKLAGVFGSYG 340 (388)
T ss_pred HHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCccc--CCCCchHHHHHHHHHhccCcCceEEEEeccC
Confidence 4677788889999888744 44566665 6899999998864 6899999999999888887666677777776
Q ss_pred ccc
Q 045642 313 LCS 315 (406)
Q Consensus 313 ~~~ 315 (406)
...
T Consensus 341 W~g 343 (388)
T COG0426 341 WSG 343 (388)
T ss_pred CCC
Confidence 654
No 34
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=87.80 E-value=7.2 Score=39.41 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCC-------------ceEEEEe
Q 045642 165 KKLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKR-------------SFEVFIA 231 (406)
Q Consensus 165 ~~~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~-------------~f~ViV~ 231 (406)
+++++.+.+.++.|.. .....+.+.+..+++......++|-|.+..+...|..+.+.|. ..+|++.
T Consensus 27 ~~v~~a~~~~~~~~~~-~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~ 105 (363)
T TIGR01437 27 DEVADAQKRGAQNYFE-IKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLP 105 (363)
T ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEE
Confidence 5666777777665543 3344556666666777655788888888888888887765553 2377774
Q ss_pred cCCCCcch--HHHHHHHHhCCCceEEEc-----c-hHHHHHh-hcCCEEEEc--ceeEeeCCCcccccchHHHHHHHhhC
Q 045642 232 DGAPKFEG--HILAKELDKKGLKAIVIT-----D-SAVFAMI-SRVNMVIVG--VHAVMANGGVIAPAGLHVLALAAKKH 300 (406)
Q Consensus 232 EsrP~~eG--~~~a~~L~~~GI~vt~I~-----D-sav~~~m-~~vd~VllG--Adav~~nG~vvnk~GT~~lAl~Ak~~ 300 (406)
+|.+.. ......+...|..+.++. | ..+...+ ++...+++- .+. ..|.+.. + -.++-+||.+
T Consensus 106 --~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~--~~g~~~~-~--~~i~~~a~~~ 178 (363)
T TIGR01437 106 --KGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHC--VQKSMLS-V--EDAAQVAQEH 178 (363)
T ss_pred --CccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCC--CcCCcCC-H--HHHHHHHHHc
Confidence 344321 122234445676555542 2 2233333 233322221 111 2233333 2 4578899999
Q ss_pred CCceEE
Q 045642 301 DVPFVV 306 (406)
Q Consensus 301 ~vPv~V 306 (406)
++||++
T Consensus 179 gi~viv 184 (363)
T TIGR01437 179 NLPLIV 184 (363)
T ss_pred CCeEEE
Confidence 999976
No 35
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=85.71 E-value=8.1 Score=39.55 Aligned_cols=118 Identities=21% Similarity=0.206 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHH----hcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHH-hCCCceEEE
Q 045642 182 INTCREGIAEQAME----LIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELD-KKGLKAIVI 256 (406)
Q Consensus 182 ~~~~~~~I~~~a~~----~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~-~~GI~vt~I 256 (406)
+..|++.|+++.-. .|..+|++||-|+|..++-.|...++.|.+ |+--||++-=. ..++ -.|+.|.+.
T Consensus 105 ~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aN----ILlPrPGfp~Y---~~~a~~~~lEVR~y 177 (447)
T KOG0259|consen 105 ILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGAN----ILLPRPGFPLY---DTRAIYSGLEVRYY 177 (447)
T ss_pred cHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCc----eecCCCCCchH---HHhhhhcCceeEee
Confidence 45667777776432 567789999999999999999988855544 44467765422 2222 357777653
Q ss_pred ---c-------chHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 257 ---T-------DSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 257 ---~-------Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
| -.++-++.-+=++.++---==-++|+++.+-=--.+|-.|+.++++|+.
T Consensus 178 dlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 178 DLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred cccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 2 2356666655444443222224678899888888999999999999985
No 36
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=85.07 E-value=32 Score=31.90 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=25.0
Q ss_pred hhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCC
Q 045642 265 ISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 265 m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
+..-|.+|+- ...|.--+ ...++-.||..|.|+++++..
T Consensus 107 ~~~gDvli~i----S~SG~s~~---v~~a~~~Ak~~G~~vI~IT~~ 145 (196)
T PRK10886 107 GHAGDVLLAI----STRGNSRD---IVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_pred CCCCCEEEEE----eCCCCCHH---HHHHHHHHHHCCCEEEEEeCC
Confidence 4455666652 22343222 455677999999999999854
No 37
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=84.61 E-value=8 Score=37.31 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=80.5
Q ss_pred HHHHHHHHhcccCcEEEeccChHHHHHHHHHHHH---cCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHH
Q 045642 188 GIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKE---KKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAM 264 (406)
Q Consensus 188 ~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~---~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~ 264 (406)
..+.++.+....+-.|+-+|..+||........+ ++.--.|+.+- .+...++.+.+.||++....+
T Consensus 30 ~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVP-----ts~~s~q~~~~~gi~l~~~d~------ 98 (261)
T KOG3075|consen 30 LAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVP-----TSFRSAQLALEYGIPLSDLDS------ 98 (261)
T ss_pred HHHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEecc-----cchhhHHHHHhcCCccccCCC------
Confidence 3345555555555567778888888877766643 34433344332 234568888999999988776
Q ss_pred hhcCCEEEEcceeEeeCCCcccccchHH-HHHHHhhCCCceEEecCCcccccc
Q 045642 265 ISRVNMVIVGVHAVMANGGVIAPAGLHV-LALAAKKHDVPFVVVASTHELCSL 316 (406)
Q Consensus 265 m~~vd~VllGAdav~~nG~vvnk~GT~~-lAl~Ak~~~vPv~V~aes~K~~~~ 316 (406)
=+.+|+.|=|||-|-+|..++---|-.+ --..=....+.|+|++...|+++.
T Consensus 99 hp~iDlaidgADEvd~nln~ikggGg~l~qEk~v~~~akkfiviad~~k~~~~ 151 (261)
T KOG3075|consen 99 HPVIDLAIDGADEVDENLNLIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSKG 151 (261)
T ss_pred CceeEEEecCchhhCcCcceEEeccchhhHHHHHHHhhhceEEEeeccccchh
Confidence 3578999999999999988876544432 222333356778999999999954
No 38
>PRK02947 hypothetical protein; Provisional
Probab=84.49 E-value=39 Score=32.36 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccC--hHHHHHHH-HH------------------------
Q 045642 166 KLKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLGH--SKFVKEFL-CA------------------------ 218 (406)
Q Consensus 166 ~~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~--S~tV~~~L-~~------------------------ 218 (406)
++...+.+.++++.++.....+++++..++.|.++..|..+|. |..+..-+ ..
T Consensus 6 ~~~~~~~~~l~~i~~~~~e~i~~aa~lla~~i~~a~~I~i~G~G~S~~vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~ 85 (246)
T PRK02947 6 EYFDAVIELLERVRETQAEAIEKAADLIADSIRNGGLIYVFGTGHSHILAEEVFYRAGGLAPVNPILEPSLMLHEGAVAS 85 (246)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHhccccccCcccCCCCCHHHhccccHHHH
Confidence 3445555666665544444556666677778888888888764 33333211 11
Q ss_pred ---------------HHHcCCceEEEEecCCCC--cchHHHHHHHHhCCCceEEEcchHH-----------HHHhhcCCE
Q 045642 219 ---------------AKEKKRSFEVFIADGAPK--FEGHILAKELDKKGLKAIVITDSAV-----------FAMISRVNM 270 (406)
Q Consensus 219 ---------------A~~~~~~f~ViV~EsrP~--~eG~~~a~~L~~~GI~vt~I~Dsav-----------~~~m~~vd~ 270 (406)
+..-+.. .|+++=|.-+ .+-..+++.+.+.|+++..|++..- ..+.+.+|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~ 164 (246)
T PRK02947 86 SYLERVEGYAKAILDRYDIRPG-DVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADV 164 (246)
T ss_pred HHhhhcccHHHHHHHHcCCCCC-CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCE
Confidence 1101111 2333333332 2336789999999999999999763 566677898
Q ss_pred EEE
Q 045642 271 VIV 273 (406)
Q Consensus 271 Vll 273 (406)
||.
T Consensus 165 ~l~ 167 (246)
T PRK02947 165 VLD 167 (246)
T ss_pred EEE
Confidence 885
No 39
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=84.41 E-value=28 Score=36.58 Aligned_cols=115 Identities=14% Similarity=0.173 Sum_probs=62.8
Q ss_pred HHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCC-CCcch-HHHHHHHHhCCCceEEEcc------hHH
Q 045642 190 AEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGA-PKFEG-HILAKELDKKGLKAIVITD------SAV 261 (406)
Q Consensus 190 ~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~Esr-P~~eG-~~~a~~L~~~GI~vt~I~D------sav 261 (406)
-+..++++...+.+++-+.+..+..+| .+...| -+|++.... +...| ..+...+...|+.+..+.- ..+
T Consensus 128 e~~lA~l~gae~alvv~sg~aAi~l~l-~~l~~G--deVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l~dl 204 (454)
T TIGR00474 128 EGLLCELTGAEDALVVNNNAAAVLLAL-NTLAKG--KEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTHLKDY 204 (454)
T ss_pred HHHHHHHhCCCcEEEECCHHHHHHHHH-HHhCCc--CEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCCHHHH
Confidence 334445555445666655555555555 444333 368887653 32333 3445667788999888732 122
Q ss_pred HHHhhcCCEE-EEcceeEee-CCCcccccchHHHHHHHhhCCCceEEec
Q 045642 262 FAMISRVNMV-IVGVHAVMA-NGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 262 ~~~m~~vd~V-llGAdav~~-nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
...+..=+++ ++-..+.+. +| .....--..++-+||.+|+||+|=+
T Consensus 205 e~aI~~~T~lv~~~h~sN~~~~G-~~~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 205 EDAITENTALLLKVHTSNYRIVG-FTEEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred HHhcCcCCEEEEEEccCcccccC-CCCCCCHHHHHHHHHHcCCeEEEEC
Confidence 2333332344 333222221 22 1123445678899999999999854
No 40
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=82.62 E-value=16 Score=32.89 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEecc--ChHHHHHHHHHHHH-cCCceE--------------EEEe
Q 045642 169 SELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTLG--HSKFVKEFLCAAKE-KKRSFE--------------VFIA 231 (406)
Q Consensus 169 ~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g--~S~tV~~~L~~A~~-~~~~f~--------------ViV~ 231 (406)
+..+..+++..+.++ ..-.+.+++.|.+...|..+| .|..+...+..... -|++.. |++.
T Consensus 5 ~~~~~~l~~t~~~l~---~~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~ 81 (179)
T cd05005 5 SLILEEIENVADKID---EEELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIA 81 (179)
T ss_pred HHHHHHHHHHHHhcC---HHHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEE
Confidence 334444444444332 233344555665556666654 56666555544332 222211 1222
Q ss_pred cCCCCc--chHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEc
Q 045642 232 DGAPKF--EGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVG 274 (406)
Q Consensus 232 EsrP~~--eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllG 274 (406)
=|..+. +-..+++.+.+.|+++..|++..-..+-+.+|.+|.-
T Consensus 82 iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~ 126 (179)
T cd05005 82 ISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVI 126 (179)
T ss_pred EcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEe
Confidence 222222 2257888999999999999998888888888987763
No 41
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=82.41 E-value=15 Score=33.03 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=52.9
Q ss_pred HHHHHHhcccCcEEEecc--ChHHHHHHHHHHH-HcCCce--------------EEEEecCCCC--cchHHHHHHHHhCC
Q 045642 190 AEQAMELIHQNEVILTLG--HSKFVKEFLCAAK-EKKRSF--------------EVFIADGAPK--FEGHILAKELDKKG 250 (406)
Q Consensus 190 ~~~a~~~I~~g~~ILT~g--~S~tV~~~L~~A~-~~~~~f--------------~ViV~EsrP~--~eG~~~a~~L~~~G 250 (406)
.+.+++.|.+...|..+| .|..+...+..-. .-|+.. .|+++=|..+ .+-...++.+++.|
T Consensus 20 ~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g 99 (179)
T TIGR03127 20 LDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETESLVTVAKKAKEIG 99 (179)
T ss_pred HHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCC
Confidence 334555666667777765 4555554443322 222111 1222222222 22357888899999
Q ss_pred CceEEEcchHHHHHhhcCCEEEEcc
Q 045642 251 LKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 251 I~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
+++..|++..-..+.+.+|.+|.-.
T Consensus 100 ~~ii~IT~~~~s~la~~ad~~l~~~ 124 (179)
T TIGR03127 100 ATVAAITTNPESTLGKLADVVVEIP 124 (179)
T ss_pred CeEEEEECCCCCchHHhCCEEEEeC
Confidence 9999999998888888999988643
No 42
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=81.76 E-value=7 Score=34.57 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=62.1
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcce
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVH 276 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAd 276 (406)
+..|+.|...|+-.- ++... +++..+|+|+|=.|...|. .+-. +++.....++++||.|++-..
T Consensus 8 ~~~~~~V~~VG~f~P---~~~~l--~~~~~~v~v~d~~~~~~~~----------~~~~-~~~~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 8 IGPGDKVGMVGYFQP---LVEKL--KERGAEVRVFDLNPDNIGE----------EPGD-VPDEDAEEILPWADVVIITGS 71 (147)
T ss_dssp TTTTSEEEEES--HC---CHHHH--CCCCSEEEEEESSGGG--S----------SCT--EEGGGHHHHGGG-SEEEEECH
T ss_pred hcCCCEEEEEcCcHH---HHHHH--hcCCCCEEEEECCCCCCCC----------CCCc-CCHHHHHHHHccCCEEEEEee
Confidence 568899999997422 22222 2467899999999965431 0101 188889999999999999765
Q ss_pred eEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccccCC
Q 045642 277 AVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYP 318 (406)
Q Consensus 277 av~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~~ 318 (406)
++. | ||..--+.....+.++++..+|--++|...
T Consensus 72 Tlv------N--~Ti~~iL~~~~~~~~vil~GpS~~~~P~~l 105 (147)
T PF04016_consen 72 TLV------N--GTIDDILELARNAREVILYGPSAPLHPEAL 105 (147)
T ss_dssp HCC------T--TTHHHHHHHTTTSSEEEEESCCGGS-GGGG
T ss_pred eee------c--CCHHHHHHhCccCCeEEEEecCchhhHHHH
Confidence 543 3 444433333336899999999988888443
No 43
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=81.53 E-value=27 Score=35.90 Aligned_cols=102 Identities=12% Similarity=0.002 Sum_probs=59.3
Q ss_pred HhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch---HHHHHhh-cCCE
Q 045642 195 ELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS---AVFAMIS-RVNM 270 (406)
Q Consensus 195 ~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds---av~~~m~-~vd~ 270 (406)
++....+.|++-+.+..+..++......| -+|++...-+...-..+...+...|+.++++... .+...+. +...
T Consensus 81 ~l~g~~~al~~~sG~~Ai~~~l~all~~G--d~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tkl 158 (403)
T PRK07810 81 LIEGAEACFATASGMSAVFTALGALLGAG--DRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQA 158 (403)
T ss_pred HHhCCCcEEEECChHHHHHHHHHHHhCCC--CEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceE
Confidence 34444467888777777777766655333 3677665432222234556677889999998533 2333332 3333
Q ss_pred EEEcceeEeeCCCcccccc----hHHHHHHHhhCCCceEE
Q 045642 271 VIVGVHAVMANGGVIAPAG----LHVLALAAKKHDVPFVV 306 (406)
Q Consensus 271 VllGAdav~~nG~vvnk~G----T~~lAl~Ak~~~vPv~V 306 (406)
|++ + ...|..| --.++-+||+++++|+|
T Consensus 159 V~~-------e-sp~Nptg~v~dl~~I~~la~~~g~~viv 190 (403)
T PRK07810 159 VFF-------E-TPSNPMQSLVDIAAVSELAHAAGAKVVL 190 (403)
T ss_pred EEE-------E-CCCCCCCeecCHHHHHHHHHHcCCEEEE
Confidence 332 1 2334444 34577889999998876
No 44
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.23 E-value=9.6 Score=30.91 Aligned_cols=58 Identities=28% Similarity=0.290 Sum_probs=38.8
Q ss_pred HHHHHhCCCceEEE------cchH--HHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 243 AKELDKKGLKAIVI------TDSA--VFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 243 a~~L~~~GI~vt~I------~Dsa--v~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
.+.+.+.|...... .... +...++++|.||+=.|.|- ..-+..+--.||.+++||+.+
T Consensus 16 ~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs-------H~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 16 KRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVS-------HNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcC-------hHHHHHHHHHHHHcCCcEEEE
Confidence 34444555555555 3333 5556678899999886654 445566677899999999975
No 45
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.72 E-value=6.3 Score=32.40 Aligned_cols=91 Identities=19% Similarity=0.338 Sum_probs=62.7
Q ss_pred EEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHH-----hhcCCEEEEccee
Q 045642 203 ILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAM-----ISRVNMVIVGVHA 277 (406)
Q Consensus 203 ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~-----m~~vd~VllGAda 277 (406)
|+.+|++..-..+++...+ ...+|+++|..|.. ++.+.+.|+++.+ -|..=... +.+++.|++..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~--~~~~vvvid~d~~~-----~~~~~~~~~~~i~-gd~~~~~~l~~a~i~~a~~vv~~~~- 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE--GGIDVVVIDRDPER-----VEELREEGVEVIY-GDATDPEVLERAGIEKADAVVILTD- 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH--TTSEEEEEESSHHH-----HHHHHHTTSEEEE-S-TTSHHHHHHTTGGCESEEEEESS-
T ss_pred eEEEcCCHHHHHHHHHHHh--CCCEEEEEECCcHH-----HHHHHhccccccc-ccchhhhHHhhcCccccCEEEEccC-
Confidence 5668888888888888875 33788888888653 7888889987665 44332333 346777777765
Q ss_pred EeeCCCcccccchHHHHHHHhh-CC-CceEEecCC
Q 045642 278 VMANGGVIAPAGLHVLALAAKK-HD-VPFVVVAST 310 (406)
Q Consensus 278 v~~nG~vvnk~GT~~lAl~Ak~-~~-vPv~V~aes 310 (406)
+...+..+|+.||. ++ +++++.+..
T Consensus 72 --------~d~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 72 --------DDEENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp --------SHHHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred --------CHHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 56778899999998 33 677766544
No 46
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=79.57 E-value=23 Score=34.16 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=55.0
Q ss_pred HHHHHHhcccCcEEEecc--ChHHHHHHHHHHHH-cCCc-------------------eEEEEecCCCC--cchHHHHHH
Q 045642 190 AEQAMELIHQNEVILTLG--HSKFVKEFLCAAKE-KKRS-------------------FEVFIADGAPK--FEGHILAKE 245 (406)
Q Consensus 190 ~~~a~~~I~~g~~ILT~g--~S~tV~~~L~~A~~-~~~~-------------------f~ViV~EsrP~--~eG~~~a~~ 245 (406)
.+.++++|.+...|..+| .|..+...|..-.. -|+. -.|+++=|..+ .+-...++.
T Consensus 118 l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ 197 (278)
T PRK11557 118 LHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERRELNLAADE 197 (278)
T ss_pred HHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 455677787777777654 55555555543221 1111 11222223333 334578899
Q ss_pred HHhCCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 246 LDKKGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 246 L~~~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
+++.|+++..|+|+.-..+-+.+|.+|...
T Consensus 198 ak~~ga~iI~IT~~~~s~la~~ad~~l~~~ 227 (278)
T PRK11557 198 ALRVGAKVLAITGFTPNALQQRASHCLYTI 227 (278)
T ss_pred HHHcCCCEEEEcCCCCCchHHhCCEEEEeC
Confidence 999999999999998888888899999753
No 47
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=79.31 E-value=35 Score=34.20 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=54.2
Q ss_pred cCcEEEeccChHHHHHHHHHHHH-cCCceEEEEecCCCCcch-HHHHHHHHhCCCceEEEcch--------HHHHHhhcC
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKE-KKRSFEVFIADGAPKFEG-HILAKELDKKGLKAIVITDS--------AVFAMISRV 268 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~-~~~~f~ViV~EsrP~~eG-~~~a~~L~~~GI~vt~I~Ds--------av~~~m~~v 268 (406)
...+++|-|.+..+...+..+.. ....-+|++... .+.+ ....+.+...|+++..++-. .+...+..=
T Consensus 59 ~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~--~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~ 136 (379)
T TIGR03402 59 PDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAV--EHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDD 136 (379)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEccc--ccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCCC
Confidence 34578887777776666665532 111223443322 2233 24445666789998888521 222333222
Q ss_pred CEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 269 NMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 269 d~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+++++-...-... |.+..+ ..++-+|+.++++++|
T Consensus 137 ~~lv~i~~~~n~t-G~~~~~--~~I~~l~~~~g~~viv 171 (379)
T TIGR03402 137 TALVSVMWANNET-GTIFPI--EEIGEIAKERGALFHT 171 (379)
T ss_pred cEEEEEEcccCCe-eecccH--HHHHHHHHHcCCEEEE
Confidence 2333322222223 333333 3588899999988876
No 48
>PRK13937 phosphoheptose isomerase; Provisional
Probab=79.15 E-value=48 Score=30.24 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEc
Q 045642 240 HILAKELDKKGLKAIVITDSAVFAMISRVNMVIVG 274 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllG 274 (406)
...++.+.+.|+++..|+...-..+.+.+|.+|.-
T Consensus 123 ~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~ 157 (188)
T PRK13937 123 LAALEKARELGMKTIGLTGRDGGKMKELCDHLLIV 157 (188)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence 56788888899999999887777777777877753
No 49
>PRK13936 phosphoheptose isomerase; Provisional
Probab=78.78 E-value=54 Score=30.19 Aligned_cols=36 Identities=6% Similarity=0.092 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCceEEEcc---hHHHHHhhcCCEEEEcc
Q 045642 240 HILAKELDKKGLKAIVITD---SAVFAMISRVNMVIVGV 275 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~D---sav~~~m~~vd~VllGA 275 (406)
..+++.+++.|+++..|++ +.+.-+...+|.+|.-.
T Consensus 128 ~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~ 166 (197)
T PRK13936 128 IQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVP 166 (197)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeC
Confidence 4678888889999999988 44444444577666543
No 50
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=78.54 E-value=35 Score=34.83 Aligned_cols=99 Identities=15% Similarity=0.127 Sum_probs=55.6
Q ss_pred hcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-H-HHHHHHHhCCCceEEEcc---hHHHHHhh-cCC
Q 045642 196 LIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-H-ILAKELDKKGLKAIVITD---SAVFAMIS-RVN 269 (406)
Q Consensus 196 ~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~-~~a~~L~~~GI~vt~I~D---sav~~~m~-~vd 269 (406)
+....+.|+|-|....+...|....+.|. +|++. ++.+.+ . .+...+...|+.++.+.- ..+...+. +..
T Consensus 73 l~g~~~~v~~ssG~~Ai~~al~al~~~Gd--~Vi~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tk 148 (390)
T PRK08133 73 LEGAEACVATASGMAAILAVVMALLQAGD--HVVSS--RSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTK 148 (390)
T ss_pred HhCCCcEEEECCHHHHHHHHHHHHhCCCC--EEEEc--cCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCe
Confidence 33334567777666666666665553443 55553 444444 2 333456778999988842 23333333 333
Q ss_pred EEEEcceeEeeCCCcccccch----HHHHHHHhhCCCceEE
Q 045642 270 MVIVGVHAVMANGGVIAPAGL----HVLALAAKKHDVPFVV 306 (406)
Q Consensus 270 ~VllGAdav~~nG~vvnk~GT----~~lAl~Ak~~~vPv~V 306 (406)
.|++- ...|..|. ..++-+|++++++++|
T Consensus 149 lV~ie--------~p~NptG~v~dl~~I~~la~~~gi~liv 181 (390)
T PRK08133 149 LFFLE--------TPSNPLTELADIAALAEIAHAAGALLVV 181 (390)
T ss_pred EEEEE--------CCCCCCCCcCCHHHHHHHHHHcCCEEEE
Confidence 33331 12234443 5677789999998886
No 51
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=78.52 E-value=6.5 Score=38.37 Aligned_cols=106 Identities=23% Similarity=0.242 Sum_probs=69.5
Q ss_pred eccChHHHHHHH-HHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCc----eEEEcchHHHHHhhcCCEEEEcceeEe
Q 045642 205 TLGHSKFVKEFL-CAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLK----AIVITDSAVFAMISRVNMVIVGVHAVM 279 (406)
Q Consensus 205 T~g~S~tV~~~L-~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~----vt~I~Dsav~~~m~~vd~VllGAdav~ 279 (406)
+.|.|..+=.-| +...++|...+|.+++-+|...- .+.+...++. +-+....++...|+.||.|+--|..+.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~---~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF---LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc---chhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 345555555444 44455565567777775554322 2234444433 222233577788999999988887766
Q ss_pred eCC-------CcccccchHHHHHHHhhCCCceEEecCCccc
Q 045642 280 ANG-------GVIAPAGLHVLALAAKKHDVPFVVVASTHEL 313 (406)
Q Consensus 280 ~nG-------~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~ 313 (406)
..| --+|--||..+.-+|+.++|+-+|.+.|.--
T Consensus 79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~v 119 (280)
T PF01073_consen 79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISV 119 (280)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcce
Confidence 655 1347799999999999999999998887654
No 52
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=78.32 E-value=10 Score=35.37 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=60.9
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeE
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav 278 (406)
.|..||..|......+-++...+.|..+ .|+...+. .-.+.|.+.| .++++.-.--...+..++.|++..+--
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~V--tVvsp~~~----~~l~~l~~~~-~i~~~~~~~~~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQL--RVIAEELE----SELTLLAEQG-GITWLARCFDADILEGAFLVIAATDDE 80 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEE--EEEcCCCC----HHHHHHHHcC-CEEEEeCCCCHHHhCCcEEEEECCCCH
Confidence 4678999999888888787777667654 44443333 2234566666 677765433233456666666554221
Q ss_pred eeCCCcccccchHHHHHHHhhCCCceEEecC
Q 045642 279 MANGGVIAPAGLHVLALAAKKHDVPFVVVAS 309 (406)
Q Consensus 279 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ae 309 (406)
-+| ..++..|+..++||.++.+
T Consensus 81 -----~ln----~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 81 -----ELN----RRVAHAARARGVPVNVVDD 102 (205)
T ss_pred -----HHH----HHHHHHHHHcCCEEEECCC
Confidence 122 4788899999999987643
No 53
>PLN02651 cysteine desulfurase
Probab=78.19 E-value=45 Score=33.31 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=52.7
Q ss_pred cCcEEEeccChHHHHHHHHHHHH--cCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc--------hHHHHHhh-c
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKE--KKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD--------SAVFAMIS-R 267 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~--~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D--------sav~~~m~-~ 267 (406)
...+++|-|.|..+...+..+.. .++.-+|++.+.....- ......+...|+++..++- ..+...+. +
T Consensus 60 ~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~-~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~ 138 (364)
T PLN02651 60 PKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCV-LDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRPD 138 (364)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHH-HHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCC
Confidence 34678877766665555554432 13334677654332111 1223445678998887742 12333333 3
Q ss_pred CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 268 VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 268 vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
...|++ ...-...|.+ .. -..++-+||.++++++|
T Consensus 139 t~lv~v-~~~~n~tG~~-~~--l~~I~~~~~~~g~~~~v 173 (364)
T PLN02651 139 TALVSV-MAVNNEIGVI-QP--VEEIGELCREKKVLFHT 173 (364)
T ss_pred cEEEEE-ECCCCCceec-cc--HHHHHHHHHHcCCEEEE
Confidence 333333 2222223333 22 23578889999988876
No 54
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=77.22 E-value=14 Score=34.39 Aligned_cols=100 Identities=20% Similarity=0.099 Sum_probs=60.2
Q ss_pred EEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc---hHHHHHhhcCCEEEEcceeEe
Q 045642 203 ILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD---SAVFAMISRVNMVIVGVHAVM 279 (406)
Q Consensus 203 ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D---sav~~~m~~vd~VllGAdav~ 279 (406)
|+++|.+..+=+-+..+..+ ..++|.++-..+ -...++.|.+.|+.+....- .++...++.+|.|++-.....
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~---~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDP---SSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSS---HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEecc---chhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 56667655544444333322 567777765544 34568889999997663322 466777787777765432211
Q ss_pred eCCCcccccchHHHHHHHhhCCCceEEecCC
Q 045642 280 ANGGVIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 280 ~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
-...-....++-+|+..||+.||..+.
T Consensus 77 ----~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 77 ----PSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp ----CCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred ----hhhhhhhhhHHHhhhccccceEEEEEe
Confidence 122334566788999999999997554
No 55
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=77.10 E-value=15 Score=35.27 Aligned_cols=86 Identities=15% Similarity=0.209 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHcCCceEEEEecCCCCcch---HHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcc
Q 045642 209 SKFVKEFLCAAKEKKRSFEVFIADGAPKFEG---HILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVI 285 (406)
Q Consensus 209 S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG---~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vv 285 (406)
......+|..+.+.....+++|=+ .|...+ .....++....--+.+..+..+..+++++|.|+.-.
T Consensus 139 ~~~~~~~l~~~~~~~p~~~lvvK~-HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~Vvtin---------- 207 (269)
T PF05159_consen 139 QADFLDMLESFAKENPDAKLVVKP-HPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDAVVTIN---------- 207 (269)
T ss_pred HhHHHHHHHHHHHHCCCCEEEEEE-CchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCEEEEEC----------
Confidence 356778888887665566766554 564222 233444433233344556788899999999888642
Q ss_pred cccchHHHHHHHhhCCCceEEecCC
Q 045642 286 APAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 286 nk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
..+++=|-.+|+||+++..+
T Consensus 208 -----StvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 208 -----STVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred -----CHHHHHHHHcCCceEEecCc
Confidence 34678888999999998754
No 56
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=76.62 E-value=36 Score=35.43 Aligned_cols=105 Identities=15% Similarity=0.187 Sum_probs=59.2
Q ss_pred HhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch--HHHHHHHHhCCCceEEEcc---hHHHHHhhcCC
Q 045642 195 ELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG--HILAKELDKKGLKAIVITD---SAVFAMISRVN 269 (406)
Q Consensus 195 ~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG--~~~a~~L~~~GI~vt~I~D---sav~~~m~~vd 269 (406)
++......|+|-|.+..+...+....+.|. +|++... .+.| ..+.+.|.+.|+.++++.- .++...+..=+
T Consensus 75 ~l~g~~~av~~sSGt~Al~~al~~ll~~Gd--~Vi~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~T 150 (433)
T PRK08134 75 ALEGGVGAIATASGQAALHLAIATLMGAGS--HIVASSA--LYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNT 150 (433)
T ss_pred HHhCCCcEEEeCCHHHHHHHHHHHHhCCCC--EEEEeCC--ccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCC
Confidence 344434567777777666666665554443 5666533 3334 3444567789999998852 24444454333
Q ss_pred EEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 270 MVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 270 ~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
++|+-- .+....+.+.. --.++-+|+.++++|+|
T Consensus 151 klV~~e-~~~np~g~v~D--i~~I~~la~~~gi~liv 184 (433)
T PRK08134 151 RLLFGE-TLGNPGLEVLD--IPTVAAIAHEAGVPLLV 184 (433)
T ss_pred eEEEEE-CCCcccCcccC--HHHHHHHHHHcCCEEEE
Confidence 444322 22211112222 34588999999999887
No 57
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=76.59 E-value=54 Score=32.60 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--cC--cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCce
Q 045642 178 LIEDINTCREGIAEQAMELIH--QN--EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKA 253 (406)
Q Consensus 178 ~~~e~~~~~~~I~~~a~~~I~--~g--~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~v 253 (406)
|.+.++.+++.+++ ++. ++ .+++|-|.+..+..++......+. +|+|.. +..-|..+.......|+++
T Consensus 33 ~~~~~~~~r~~la~----l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~--~vlv~~--~~~~~~~~~~~a~~~g~~~ 104 (363)
T TIGR02326 33 YNIVVEQIRQQLLA----LATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDG--KLLVVI--NGAYGARIVQIAEYLGIPH 104 (363)
T ss_pred HHHHHHHHHHHHHH----HhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCC--eEEEEe--CChhhHHHHHHHHHcCCce
Confidence 44444444444443 444 22 356676777777767666653332 444433 1222333444456689988
Q ss_pred EEEcc--------hHHHHHhhc-CC-EEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 254 IVITD--------SAVFAMISR-VN-MVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 254 t~I~D--------sav~~~m~~-vd-~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
..++. ..+...+.. .+ +++.-++.=...|. ++.+ ..++-+||.++++++|=
T Consensus 105 ~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~-~~~i--~~I~~l~~~~g~~livD 165 (363)
T TIGR02326 105 HVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGI-LNPI--EAVAKLAHRHGKVTIVD 165 (363)
T ss_pred EEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccc-cCcH--HHHHHHHHHcCCEEEEE
Confidence 87743 234444442 11 23333333233433 3433 56888899999877763
No 58
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=76.49 E-value=50 Score=33.16 Aligned_cols=135 Identities=13% Similarity=0.124 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CcEEEeccChHHHHHHHHHHHHcCCceEEEEe-cCCCCcchHH
Q 045642 165 KKLKSELIKAVNELIEDINTCREGIAEQAMELIHQ--NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIA-DGAPKFEGHI 241 (406)
Q Consensus 165 ~~~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~--g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~-EsrP~~eG~~ 241 (406)
+.+++...++++.+-- -....+.+-+..+++..- ..+++|.|.+.....++.... ++.-+|++. -.+|.+....
T Consensus 36 ~~~~~~~~~~~~~~~g-~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~--~~gd~Vli~~~d~p~~~s~~ 112 (346)
T TIGR03576 36 FKIDEEDLELLETYVG-PAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE--PPGRKVVHYLPEKPAHPSIP 112 (346)
T ss_pred hhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC--CCCCEEEECCCCCCCchhHH
Confidence 4577777777777610 111222333333444433 456666666666666665554 333456654 3356544322
Q ss_pred HHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 242 LAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 242 ~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
....-.|.++....|-.-....++..+|++- .. ..+|.++.+.=-..++-.|+.++++|+|
T Consensus 113 --~~~~l~ga~~~~~~~l~~l~~~~~~~lIiit-g~-s~~G~v~~~~~L~~i~~la~~~~~~liv 173 (346)
T TIGR03576 113 --RSCKLAGAEYFESDELSELKKIDGTSLVVIT-GS-TMDLKVVSEEDLKRVIKQAKSKEAIVLV 173 (346)
T ss_pred --HHHHHcCCEEeccCCHHHHhhCcCceEEEEE-CC-CCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 2233346655433332211112233344441 11 2234444433333556668889988775
No 59
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=76.45 E-value=52 Score=32.15 Aligned_cols=111 Identities=18% Similarity=0.156 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc---hHHHH
Q 045642 187 EGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD---SAVFA 263 (406)
Q Consensus 187 ~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D---sav~~ 263 (406)
+.+.+..++++...+.|++.+.+..+...+..+...| -+|++ ++|.+.... ..+...|+++..+.. ..+-.
T Consensus 49 ~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~~~~~g--d~Vl~--~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~le~ 122 (349)
T cd06454 49 EELEEELAEFHGKEAALVFSSGYAANDGVLSTLAGKG--DLIIS--DSLNHASII--DGIRLSGAKKRIFKHNDMEDLEK 122 (349)
T ss_pred HHHHHHHHHHhCCCCEEEeccHHHHHHHHHHHhcCCC--CEEEE--ehhhhHHHH--HHHHHcCCceEEecCCCHHHHHH
Confidence 3444444556654556666555555554454443233 34554 345444422 234557888876633 23334
Q ss_pred Hhhc-----CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 264 MISR-----VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 264 ~m~~-----vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
++.. -.++++ ...+....|.+..+ ..++-.|++++++|++
T Consensus 123 ~i~~~~~~~~~~~v~-~~~~~~~tG~~~~~--~~i~~~~~~~~~~liv 167 (349)
T cd06454 123 LLREARRPYGKKLIV-TEGVYSMDGDIAPL--PELVDLAKKYGAILFV 167 (349)
T ss_pred HHHHhhccCCCeEEE-EeccccCCCCccCH--HHHHHHHHHcCCEEEE
Confidence 4433 223333 33333333444443 4577889999998887
No 60
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.64 E-value=15 Score=38.43 Aligned_cols=72 Identities=15% Similarity=0.059 Sum_probs=46.8
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
.+..|+.+|...+=..+...+.+. .++|.+.|.++......+.+.|.+.||.+..-.+.. ....+|.||++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLEL--GARVTVVDDGDDERHRALAAILEALGATVRLGPGPT---LPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEECC
Confidence 456778777665544444444433 467999998876555667788999998876533322 234578888765
No 61
>PRK07582 cystathionine gamma-lyase; Validated
Probab=75.30 E-value=34 Score=34.59 Aligned_cols=96 Identities=20% Similarity=0.184 Sum_probs=56.9
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-HHHHH-HHHhCCCceEEEcchHHH-HHhhcCCEEEEcc
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-HILAK-ELDKKGLKAIVITDSAVF-AMISRVNMVIVGV 275 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~~~a~-~L~~~GI~vt~I~Dsav~-~~m~~vd~VllGA 275 (406)
..+.|++-+.+..+..+|....+ ..-+|++. .|.+.+ ..+++ .|...|+++.++...... ..+++...|++.
T Consensus 65 ~~~~v~~~sG~~Ai~~~l~all~--~Gd~Vl~~--~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~~~~~~t~lV~le- 139 (366)
T PRK07582 65 GAEALVFPSGMAAITAVLRALLR--PGDTVVVP--ADGYYQVRALAREYLAPLGVTVREAPTAGMAEAALAGADLVLAE- 139 (366)
T ss_pred CCCEEEECCHHHHHHHHHHHhcC--CCCEEEEe--CCCcHhHHHHHHHHHhcCeEEEEEECCCChHHHhccCceEEEEE-
Confidence 34667776666665555555443 33466665 355544 34444 467789999998754222 444566555553
Q ss_pred eeEeeCCCcccccc----hHHHHHHHhhCCCceEE
Q 045642 276 HAVMANGGVIAPAG----LHVLALAAKKHDVPFVV 306 (406)
Q Consensus 276 dav~~nG~vvnk~G----T~~lAl~Ak~~~vPv~V 306 (406)
. .-|+.| -..++-+|+.++++++|
T Consensus 140 -~------p~NPtg~v~di~~I~~~a~~~g~~lvV 167 (366)
T PRK07582 140 -T------PSNPGLDVCDLAALAAAAHAAGALLVV 167 (366)
T ss_pred -C------CCCCCCCccCHHHHHHHHHHcCCEEEE
Confidence 2 223333 35677888889987766
No 62
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=75.20 E-value=68 Score=31.71 Aligned_cols=103 Identities=16% Similarity=0.227 Sum_probs=51.7
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcC--Cc-eEEEEecC-CCCcchHHHHHHHHhCCCceEEEcch--------HHHHHhh
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKK--RS-FEVFIADG-APKFEGHILAKELDKKGLKAIVITDS--------AVFAMIS 266 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~--~~-f~ViV~Es-rP~~eG~~~a~~L~~~GI~vt~I~Ds--------av~~~m~ 266 (406)
..++++|-|.+..+...+......+ +. -.|++.+. .|.. ......+...|+++..++-. .+...+.
T Consensus 59 ~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~--~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~ 136 (353)
T TIGR03235 59 TEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAV--LEPIRALERNGFTVTYLPVDESGRIDVDELADAIR 136 (353)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHH--HHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCC
Confidence 3467777666655665555443211 11 34555432 2221 12224455679998887621 2223332
Q ss_pred cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 267 RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
.-+++++-.+.-...|.+. . -..++-+|++++++|+|
T Consensus 137 ~~~~lv~~~~~~n~tG~~~-~--~~~I~~l~~~~~~~~iv 173 (353)
T TIGR03235 137 PDTLLVSIMHVNNETGSIQ-P--IREIAEVLEAHEAFFHV 173 (353)
T ss_pred CCCEEEEEEcccCCceecc-C--HHHHHHHHHHcCCEEEE
Confidence 2223333222222333332 2 25688889999998887
No 63
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=75.11 E-value=38 Score=33.70 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=43.9
Q ss_pred CceEEEEecCCCCcchHHHHHHHHhC-CCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCC
Q 045642 224 RSFEVFIADGAPKFEGHILAKELDKK-GLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDV 302 (406)
Q Consensus 224 ~~f~ViV~EsrP~~eG~~~a~~L~~~-GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~v 302 (406)
.+++++++-..|.. ...+.+.+.+. |+++.++. ..+..++..+|.+++.+ |+..+ =|-.+|+
T Consensus 219 ~~~~~ii~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl~v~~s-------------G~~~l--Ea~a~G~ 281 (380)
T PRK00025 219 PDLRFVLPLVNPKR-REQIEEALAEYAGLEVTLLD-GQKREAMAAADAALAAS-------------GTVTL--ELALLKV 281 (380)
T ss_pred CCeEEEEecCChhh-HHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCEEEECc-------------cHHHH--HHHHhCC
Confidence 45666665332321 12344445556 78876654 56788899999999842 65554 4567899
Q ss_pred ceEEecC
Q 045642 303 PFVVVAS 309 (406)
Q Consensus 303 Pv~V~ae 309 (406)
|+++.-.
T Consensus 282 PvI~~~~ 288 (380)
T PRK00025 282 PMVVGYK 288 (380)
T ss_pred CEEEEEc
Confidence 9998753
No 64
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=74.96 E-value=34 Score=35.65 Aligned_cols=104 Identities=16% Similarity=0.245 Sum_probs=61.3
Q ss_pred hcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch--HHHHHHHHhCCCceEEEcch---HHHHHhh-cCC
Q 045642 196 LIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG--HILAKELDKKGLKAIVITDS---AVFAMIS-RVN 269 (406)
Q Consensus 196 ~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG--~~~a~~L~~~GI~vt~I~Ds---av~~~m~-~vd 269 (406)
+....+.|+|-|.+..+...|....+.|. +|++.+ |.+.| ..+...+...|+++..+.-. .+...+. ++.
T Consensus 76 leg~~~al~~~sG~~Ai~~al~~ll~~GD--~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tk 151 (431)
T PRK08248 76 LEGGIGALAVSSGQAAITYSILNIASAGD--EIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTK 151 (431)
T ss_pred HhCCCcEEEECCHHHHHHHHHHHHhCCCC--EEEEcc--CchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCe
Confidence 33334678888888888877776654443 566654 55555 24455677899999888532 3333332 344
Q ss_pred EEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 270 MVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 270 ~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
.|++- .---+.|.+.. -..++-+|+.++++|+|=
T Consensus 152 lV~l~-sp~NPtG~v~d---i~~I~~la~~~gi~vIvD 185 (431)
T PRK08248 152 ALFAE-TIGNPKGDVLD---IEAVAAIAHEHGIPLIVD 185 (431)
T ss_pred EEEEE-CCCCCCCcccC---HHHHHHHHHHcCCEEEEe
Confidence 44442 11112233333 236778889999988763
No 65
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.96 E-value=17 Score=37.63 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=44.6
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEccee
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHA 277 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAda 277 (406)
.+.+|+..|.++.=...-+...+.| .+|.+.+..+...=.....+|.+.|+.+.. .| .....+..+|.|+.++..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEEDQLKEALEELGELGIELVL-GE-YPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHhcCCEEEe-CC-cchhHhhcCCEEEECCCC
Confidence 3567888888774444444444445 567777765432223345677777876332 22 222456778999987753
No 66
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=74.61 E-value=36 Score=35.02 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=43.7
Q ss_pred HHHhcccCcEEEeccChHHHHHHHHHHHHc-CCceEEEEecCCCCcchHHHHHHHHhCCCceEEE
Q 045642 193 AMELIHQNEVILTLGHSKFVKEFLCAAKEK-KRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI 256 (406)
Q Consensus 193 a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~-~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I 256 (406)
....|..||+++..|....+.++.....+. ...-+++|+-. +.-|+.+++.|.+.|+++++|
T Consensus 198 ~~~~l~~gD~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vi 260 (453)
T PRK09496 198 GDTVIEAGDEVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLI 260 (453)
T ss_pred CCcEecCCCEEEEEeCHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEE
Confidence 334567888888888888877776555422 12345666655 456788899999989988887
No 67
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=74.16 E-value=38 Score=28.69 Aligned_cols=104 Identities=14% Similarity=0.218 Sum_probs=55.4
Q ss_pred HHhc--ccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchH----------H
Q 045642 194 MELI--HQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSA----------V 261 (406)
Q Consensus 194 ~~~I--~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsa----------v 261 (406)
++++ ....++++.|.+..+..++..+... +.+|++... .+.|... ..+...|.++..+.... +
T Consensus 10 ~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~--~~~v~~~~~--~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~~~~ 84 (170)
T cd01494 10 ARLLQPGNDKAVFVPSGTGANEAALLALLGP--GDEVIVDAN--GHGSRYW-VAAELAGAKPVPVPVDDAGYGGLDVAIL 84 (170)
T ss_pred HHHcCCCCCcEEEeCCcHHHHHHHHHHhCCC--CCEEEEeec--ccceehh-hHHHhcCCEEEEeccCCCCccchhhhhh
Confidence 3455 5556788888887777777777532 345666553 3333221 34456677777664221 1
Q ss_pred HHHh--hcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 262 FAMI--SRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 262 ~~~m--~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
.... .+...|++. ....+++..... -.++-+|+.+++++++
T Consensus 85 ~~~~~~~~~~~v~~~--~~~~~~g~~~~~--~~l~~~~~~~~~~li~ 127 (170)
T cd01494 85 EELKAKPNVALIVIT--PNTTSGGVLVPL--KEIRKIAKEYGILLLV 127 (170)
T ss_pred hhccccCceEEEEEe--cCcCCCCeEcCH--HHHHHHHHHcCCEEEE
Confidence 0111 122222222 222233333322 5688888999998886
No 68
>PRK13938 phosphoheptose isomerase; Provisional
Probab=74.12 E-value=69 Score=29.69 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=27.7
Q ss_pred hHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEE
Q 045642 239 GHILAKELDKKGLKAIVITDSAVFAMISRVNMVIV 273 (406)
Q Consensus 239 G~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~Vll 273 (406)
-...++.+.+.|+++..|+...-..+.+.+|.+|.
T Consensus 129 vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~ 163 (196)
T PRK13938 129 VLRAAKTARELGVTVVAMTGESGGQLAEFADFLIN 163 (196)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEE
Confidence 35778888899999999998777777777887775
No 69
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=73.96 E-value=44 Score=26.71 Aligned_cols=89 Identities=16% Similarity=0.257 Sum_probs=45.3
Q ss_pred HHHHHHHcCCceEEEEecCCCCc-----------chHHHHHHHH----hCCCceEEE--cch---HHHHHhh--cCCEEE
Q 045642 215 FLCAAKEKKRSFEVFIADGAPKF-----------EGHILAKELD----KKGLKAIVI--TDS---AVFAMIS--RVNMVI 272 (406)
Q Consensus 215 ~L~~A~~~~~~f~ViV~EsrP~~-----------eG~~~a~~L~----~~GI~vt~I--~Ds---av~~~m~--~vd~Vl 272 (406)
++..|...+.++.++.+...+.. +.+.....+. ..|++++.. ... ++..... ++|.|+
T Consensus 19 a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvv 98 (130)
T cd00293 19 AARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGADLIV 98 (130)
T ss_pred HHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCCCEEE
Confidence 33444445666776655443322 2333333333 357776543 232 2333332 479999
Q ss_pred EcceeEeeCCCccc-ccchHHHHHHHhhCCCceEEe
Q 045642 273 VGVHAVMANGGVIA-PAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 273 lGAdav~~nG~vvn-k~GT~~lAl~Ak~~~vPv~V~ 307 (406)
+|+.. .+.+.. ..|+.. -.+.+..++||+++
T Consensus 99 ig~~~---~~~~~~~~~~~~~-~~ll~~~~~pvliv 130 (130)
T cd00293 99 MGSRG---RSGLRRLLLGSVA-ERVLRHAPCPVLVV 130 (130)
T ss_pred EcCCC---CCccceeeeccHH-HHHHhCCCCCEEeC
Confidence 99865 233322 334433 33446688998864
No 70
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=73.62 E-value=4.1 Score=41.22 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=36.9
Q ss_pred HHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccc
Q 045642 261 VFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHEL 313 (406)
Q Consensus 261 v~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~ 313 (406)
.-..++++|+||.|==++-+. ++..|+ ..-+|-+||.|+|||+++|.+.+.
T Consensus 278 le~~v~daDLVITGEGr~D~Q-s~~GK~-pigVA~~Akk~~vPvIaiaGs~~~ 328 (378)
T COG1929 278 LEDAVKDADLVITGEGRIDSQ-SLHGKT-PIGVAKLAKKYGVPVIAIAGSLGE 328 (378)
T ss_pred HHHhhccCCEEEeCCCccccc-ccCCcc-chHHHHhhhhhCCCEEEEeccccc
Confidence 446688999999996554432 343333 345778999999999999997554
No 71
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=73.13 E-value=42 Score=35.03 Aligned_cols=105 Identities=10% Similarity=0.127 Sum_probs=57.2
Q ss_pred HhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch--HHHHHHHHhCCCceEEEcc----hHHHHHhhcC
Q 045642 195 ELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG--HILAKELDKKGLKAIVITD----SAVFAMISRV 268 (406)
Q Consensus 195 ~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG--~~~a~~L~~~GI~vt~I~D----sav~~~m~~v 268 (406)
++......|++-|....+...|....+.| -+|++... .+.| ..+...|...|++++++.| ..+...+..=
T Consensus 80 ~l~g~~~~v~fsSG~~Ai~~al~~ll~~G--d~VI~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~ 155 (437)
T PRK05613 80 SLEGGVHAVAFASGQAAETAAILNLAGAG--DHIVTSPR--LYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPN 155 (437)
T ss_pred HHhCCCeEEEeCCHHHHHHHHHHHhcCCC--CEEEECCC--ccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCcc
Confidence 34433345666555555555555444333 35666532 3333 3445677888999999863 2344444333
Q ss_pred CEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 269 NMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 269 d~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+++|+ .+.....-+.+ .---.++-+||.+|++|+|
T Consensus 156 tk~V~-~e~~~Np~~~v--~di~~I~~la~~~gi~liv 190 (437)
T PRK05613 156 TKAFF-GETFANPQADV--LDIPAVAEVAHRNQVPLIV 190 (437)
T ss_pred CeEEE-EECCCCCCCcc--cCHHHHHHHHHHcCCeEEE
Confidence 44444 23322211122 2345678889999999887
No 72
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=73.03 E-value=77 Score=31.42 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc--c-hHHHH
Q 045642 187 EGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT--D-SAVFA 263 (406)
Q Consensus 187 ~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~--D-sav~~ 263 (406)
+.+.+..++++...+.|++.+.+.....++.... ++.-+|++. .|.+.+...+. ...|.++..++ | ..+-.
T Consensus 87 ~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~~~~--~~gd~V~~~--~~~~~~~~~~~--~~~g~~~~~~~~~d~~~l~~ 160 (385)
T PRK05958 87 EALEEELAEWFGAERALLFSSGYAANLAVLTALA--GKGDLIVSD--KLNHASLIDGA--RLSRARVRRYPHNDVDALEA 160 (385)
T ss_pred HHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhC--CCCCEEEEe--CccCHHHHHHH--HhcCCceEEeCCCCHHHHHH
Confidence 3444444555655566776665555554444333 233345553 35554443333 33577766664 2 34444
Q ss_pred Hhhc---CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 264 MISR---VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 264 ~m~~---vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
.+.. ..++++ ...+...+|.... -..++-+|+.|++++++
T Consensus 161 ~i~~~~~~~~lvi-~~~~~~~~G~~~~--l~~i~~ia~~~~~~li~ 203 (385)
T PRK05958 161 LLAKWRAGRALIV-TESVFSMDGDLAP--LAELVALARRHGAWLLV 203 (385)
T ss_pred HHHhccCCCeEEE-EEecccCCCCcCC--HHHHHHHHHHhCCEEEE
Confidence 4433 233333 2233322222221 34678889999998775
No 73
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=72.89 E-value=69 Score=28.69 Aligned_cols=123 Identities=16% Similarity=0.189 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhc--ccCcEEEeccCh----HHHHHHHHHHHHcCCceEEEEecCCCCcch--HHHHHHHHhCCCce
Q 045642 182 INTCREGIAEQAMELI--HQNEVILTLGHS----KFVKEFLCAAKEKKRSFEVFIADGAPKFEG--HILAKELDKKGLKA 253 (406)
Q Consensus 182 ~~~~~~~I~~~a~~~I--~~g~~ILT~g~S----~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG--~~~a~~L~~~GI~v 253 (406)
++++-..+++....++ ..+..|+.+..+ .--...-+++++.|.+..|+++...+.... +...+.+.+.|+++
T Consensus 5 ME~Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ 84 (169)
T PF03853_consen 5 MENAGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKI 84 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcE
Confidence 4455667777777778 666666664322 122333344455677777766654443333 56667777889877
Q ss_pred EEE-cchHHHHHhhcCCEEEEcceeEeeCCCcccccc-hHHHHHHHhhCCCceEEe
Q 045642 254 IVI-TDSAVFAMISRVNMVIVGVHAVMANGGVIAPAG-LHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 254 t~I-~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~G-T~~lAl~Ak~~~vPv~V~ 307 (406)
... .+......+..+|.|| |+++..|---..-| ...+.-.++.++.|++.+
T Consensus 85 ~~~~~~~~~~~~~~~~dlII---Dal~G~G~~~~l~~~~~~~i~~iN~~~~~viAi 137 (169)
T PF03853_consen 85 IELDSDEDLSEALEPADLII---DALFGTGFSGPLRGPIAELIDWINASRAPVIAI 137 (169)
T ss_dssp ESSCCGSGGGHHGSCESEEE---EES-STTGGSCGSTCHHHHHHHHHHHCSEEEEE
T ss_pred eeccccchhhcccccccEEE---EecccCCCCCCcCHHHHHHHHHHhccCCcEEEe
Confidence 654 4444555666777776 77777763333333 344445667777886654
No 74
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=72.83 E-value=38 Score=34.18 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=54.4
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-HH-HHHHHHhCCCceEEEcch---HHHHHhh-cCCEEEE
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-HI-LAKELDKKGLKAIVITDS---AVFAMIS-RVNMVIV 273 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~~-~a~~L~~~GI~vt~I~Ds---av~~~m~-~vd~Vll 273 (406)
.+.+++-|.+..+...+....+.|. +|++. .|.+.+ .. +...+...|+++.++.-. .+...+. +...|++
T Consensus 56 ~~a~~~~sG~~Ai~~~l~~l~~~gd--~Vl~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~ 131 (369)
T cd00614 56 EAALAFSSGMAAISTVLLALLKAGD--HVVAS--DDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYV 131 (369)
T ss_pred CCEEEEcCHHHHHHHHHHHHcCCCC--EEEEC--CCCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEE
Confidence 3567776666666666666553443 34443 355555 22 334456789998887543 3333343 3333433
Q ss_pred cceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 274 GVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 274 GAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+.+..-.+.+.. --.++-+||.++++++|
T Consensus 132 --e~~~np~g~~~d--l~~i~~la~~~g~~liv 160 (369)
T cd00614 132 --ESPTNPTLKVVD--IEAIAELAHEHGALLVV 160 (369)
T ss_pred --ECCCCCCCeecC--HHHHHHHHHHcCCEEEE
Confidence 233222222222 23577888999999887
No 75
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=72.51 E-value=62 Score=31.62 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=66.1
Q ss_pred HHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCC------Cc--------ch----HHHHHHHHhC
Q 045642 188 GIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAP------KF--------EG----HILAKELDKK 249 (406)
Q Consensus 188 ~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP------~~--------eG----~~~a~~L~~~ 249 (406)
-+++.+.+.+.+ ..|+.+|....=-.+.+..++.|.. ++.++|... +. -| ..+++.|.+.
T Consensus 19 L~G~e~~~kL~~-s~VlVvG~GGVGs~vae~Lar~GVg-~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I 96 (268)
T PRK15116 19 LYGEKALQLFAD-AHICVVGIGGVGSWAAEALARTGIG-AITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI 96 (268)
T ss_pred HhCHHHHHHhcC-CCEEEECcCHHHHHHHHHHHHcCCC-EEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH
Confidence 456777777754 5677778766555555555555632 344444331 11 12 2567777765
Q ss_pred C--CceEEEcc----hHHHHHh-hcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCC
Q 045642 250 G--LKAIVITD----SAVFAMI-SRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 250 G--I~vt~I~D----sav~~~m-~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
+ +.++.+.+ ..+..++ .++|.||...|.+-+ -..+.-.|+.+++|||.+.+.
T Consensus 97 NP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~---------k~~L~~~c~~~~ip~I~~gGa 155 (268)
T PRK15116 97 NPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRP---------KAALIAYCRRNKIPLVTTGGA 155 (268)
T ss_pred CCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEECCc
Confidence 4 44554432 2233334 468888887775432 234667889999999988666
No 76
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=72.39 E-value=71 Score=32.25 Aligned_cols=102 Identities=11% Similarity=0.147 Sum_probs=51.8
Q ss_pred CcEEEeccChHHHHHHHHHHHH--cCCceEEEEecCCCCcchH-H-HHHHHHhCCCceEEEcc--------hHHHHHhhc
Q 045642 200 NEVILTLGHSKFVKEFLCAAKE--KKRSFEVFIADGAPKFEGH-I-LAKELDKKGLKAIVITD--------SAVFAMISR 267 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~--~~~~f~ViV~EsrP~~eG~-~-~a~~L~~~GI~vt~I~D--------sav~~~m~~ 267 (406)
.++++|-|.+..+..++..... .++.-+|++.+ |.+.+. . +.+.....|++++.++- ..+...+..
T Consensus 82 ~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 159 (401)
T PRK10874 82 KNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITP 159 (401)
T ss_pred CEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECC--cchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCc
Confidence 3466676655555555554421 12334666664 444442 2 22333567998888742 122222222
Q ss_pred CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 268 VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 268 vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
-+++++-++.-...|.+.. ...++-+|+.++++|+|
T Consensus 160 ~t~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~iv 195 (401)
T PRK10874 160 RTRILALGQMSNVTGGCPD---LARAITLAHQAGMVVMV 195 (401)
T ss_pred CcEEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEE
Confidence 2233333333333444331 23577889999988776
No 77
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=72.10 E-value=48 Score=32.32 Aligned_cols=111 Identities=26% Similarity=0.195 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccCcEEEe--ccChHHHHHHHHHHHH---------------------c
Q 045642 167 LKSELIKAVNELIED-INTCREGIAEQAMELIHQNEVILT--LGHSKFVKEFLCAAKE---------------------K 222 (406)
Q Consensus 167 ~k~~l~~~i~~~~~e-~~~~~~~I~~~a~~~I~~g~~ILT--~g~S~tV~~~L~~A~~---------------------~ 222 (406)
+.+.+++...+.+++ .....+...+.+++.|.+-+.|.. .|.|..|...+..... -
T Consensus 96 ~~~~~~~~~~~~l~~t~~~l~~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~ 175 (281)
T COG1737 96 ILEKLLAANIAALERTLNLLDEEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALL 175 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhC
Confidence 444444444444443 334445556777788877775555 5567777766655442 1
Q ss_pred CCceEEE-EecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEccee
Q 045642 223 KRSFEVF-IADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHA 277 (406)
Q Consensus 223 ~~~f~Vi-V~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAda 277 (406)
+..=-|+ +.-|+-..+-...++..++.|+++..|+|+...-+-+-+|.+|.....
T Consensus 176 ~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~~ 231 (281)
T COG1737 176 TPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPVA 231 (281)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccCc
Confidence 1111122 222222334567889999999999999999999999999999987543
No 78
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=72.01 E-value=62 Score=33.84 Aligned_cols=95 Identities=16% Similarity=0.299 Sum_probs=61.2
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch--HHHHHHHHhCCCceEEEc---c-hHHHHHhhcCCEEEEc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG--HILAKELDKKGLKAIVIT---D-SAVFAMISRVNMVIVG 274 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG--~~~a~~L~~~GI~vt~I~---D-sav~~~m~~vd~VllG 274 (406)
..|+|-|....+..+|....+.|. +|++ +.+.+.| ..+...+...|+.++++. | ..+...+..-+++|+
T Consensus 78 ~av~~~SG~aAi~~al~all~~GD--~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~- 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNICSSGD--HLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVY- 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHhcCCCC--EEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEE-
Confidence 467776767676666665554443 5665 5566766 344555789999999884 2 355555555556665
Q ss_pred ceeEeeCCCccccc----chHHHHHHHhhCCCceEE
Q 045642 275 VHAVMANGGVIAPA----GLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 275 Adav~~nG~vvnk~----GT~~lAl~Ak~~~vPv~V 306 (406)
.+. .. |.. ---.++-+||.+|+++++
T Consensus 153 ~e~-pg-----nP~~~v~Di~~I~~iA~~~gi~liv 182 (432)
T PRK06702 153 AES-LG-----NPAMNVLNFKEFSDAAKELEVPFIV 182 (432)
T ss_pred EEc-CC-----CccccccCHHHHHHHHHHcCCEEEE
Confidence 343 22 333 356788899999998876
No 79
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=71.81 E-value=63 Score=31.76 Aligned_cols=108 Identities=12% Similarity=0.103 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEec--cChHHHHHHHHHHH-HcCCce-----------------
Q 045642 167 LKSELIKAVNELIEDINTCREGIAEQAMELIHQNEVILTL--GHSKFVKEFLCAAK-EKKRSF----------------- 226 (406)
Q Consensus 167 ~k~~l~~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~--g~S~tV~~~L~~A~-~~~~~f----------------- 226 (406)
.+..+.+.+++..+-+....+.+.+.+..+.+...+|..+ |.|..+...+..-. .-|+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 88 (321)
T PRK11543 9 GRQTLMLELQEASRLPERLGDDFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIE 88 (321)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHhcCCcEEEEecChhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccC
Confidence 4455555555555444443345544444444444456654 55666666554433 223221
Q ss_pred --EEEEecCCCCc--chHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEc
Q 045642 227 --EVFIADGAPKF--EGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVG 274 (406)
Q Consensus 227 --~ViV~EsrP~~--eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllG 274 (406)
.|+++=|..+. +-..+++.+++.|+++..|++..-..+-+.+|.+|.-
T Consensus 89 ~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~ 140 (321)
T PRK11543 89 SRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDI 140 (321)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 23333333332 3368899999999999999998888888889998853
No 80
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=71.49 E-value=57 Score=33.03 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=54.8
Q ss_pred HHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc----------hHHH
Q 045642 193 AMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD----------SAVF 262 (406)
Q Consensus 193 a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D----------sav~ 262 (406)
.++++.-...++|.|.+..+..++......| -+|++. ++.+-+... .+...|+++..++- ..+.
T Consensus 72 lA~~~g~~~~~~~~g~t~a~~~al~~l~~~g--d~Vlv~--~~~h~s~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~ 145 (387)
T PRK09331 72 LAEFLGMDEARVTHGAREGKFAVMHSLCKKG--DYVVLD--GLAHYTSYV--AAERAGLNVREVPKTGYPEYKITPEAYA 145 (387)
T ss_pred HHHHhCCCcEEEeCCHHHHHHHHHHHhcCCC--CEEEEC--CCchHHHHH--HHHHcCCEEEEEeCccCcCCCcCHHHHH
Confidence 3344554567777777766666666665333 355554 344333322 24557888877752 2233
Q ss_pred HHhh--------cCCEEEEcceeEeeCCCcccccchH----HHHHHHhhCCCceEE
Q 045642 263 AMIS--------RVNMVIVGVHAVMANGGVIAPAGLH----VLALAAKKHDVPFVV 306 (406)
Q Consensus 263 ~~m~--------~vd~VllGAdav~~nG~vvnk~GT~----~lAl~Ak~~~vPv~V 306 (406)
..+. ++..|++. . .-+..|+. .++-+||+++++|+|
T Consensus 146 ~~l~~~~~~~~~~~~lV~l~--~------~~~~tG~~~~l~~I~~la~~~g~~liv 193 (387)
T PRK09331 146 EKIEEVKEETGKPPALALLT--H------VDGNYGNLADAKKVAKVAHEYGIPFLL 193 (387)
T ss_pred HHHHHhhhccCCCCEEEEEE--C------CCCCCcccccHHHHHHHHHHcCCEEEE
Confidence 3332 34444442 1 11234433 577889999998886
No 81
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=71.27 E-value=61 Score=27.40 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=27.6
Q ss_pred cCCEEEEcceeEeeCCCccc-ccchHHHHHHHhhCC--CceEEec
Q 045642 267 RVNMVIVGVHAVMANGGVIA-PAGLHVLALAAKKHD--VPFVVVA 308 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~vvn-k~GT~~lAl~Ak~~~--vPv~V~a 308 (406)
++|.+++|++.- |++-. -.|+.-...+.++.. +||+|+.
T Consensus 103 ~~dlIV~Gs~g~---~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 103 GITKLVMGASSD---NHFSMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred CCCEEEEeccCC---CceeecccCCchhHHHHhcCCCCceEEEEe
Confidence 589999999863 44432 246545556678888 9999985
No 82
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=71.04 E-value=56 Score=31.72 Aligned_cols=86 Identities=15% Similarity=0.056 Sum_probs=54.1
Q ss_pred HHHHHHhcccCcEEEec--cChHHHHHHHHHH-HHcCC---------------------ceEEEEecCCCCcchHHHHHH
Q 045642 190 AEQAMELIHQNEVILTL--GHSKFVKEFLCAA-KEKKR---------------------SFEVFIADGAPKFEGHILAKE 245 (406)
Q Consensus 190 ~~~a~~~I~~g~~ILT~--g~S~tV~~~L~~A-~~~~~---------------------~f~ViV~EsrP~~eG~~~a~~ 245 (406)
.+.++++|.+-..|..+ |.|..+...|..- .+-|+ .+-+++.-++-..+-..+++.
T Consensus 130 l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ 209 (292)
T PRK11337 130 FHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTSDVIEAVEL 209 (292)
T ss_pred HHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 35566677666666554 4566555544322 21121 222223333333344678888
Q ss_pred HHhCCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 246 LDKKGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 246 L~~~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
+.+.|+++..|++..-..+-+.+|.+|.-.
T Consensus 210 ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 239 (292)
T PRK11337 210 AKKNGAKIICITNSYHSPIAKLADYVICST 239 (292)
T ss_pred HHHCCCeEEEEeCCCCChhHHhCCEEEEcC
Confidence 999999999999998888888899999743
No 83
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=70.71 E-value=50 Score=34.07 Aligned_cols=102 Identities=13% Similarity=0.195 Sum_probs=59.4
Q ss_pred hcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch--HHHHHHHHhCCCceEEEcc---hHHHHHhh-cCC
Q 045642 196 LIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG--HILAKELDKKGLKAIVITD---SAVFAMIS-RVN 269 (406)
Q Consensus 196 ~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG--~~~a~~L~~~GI~vt~I~D---sav~~~m~-~vd 269 (406)
+......|+|-|.+..+...|....+.|. +|++. .|.+.| ..+...+...|++++.+.. ..+...+. +..
T Consensus 69 l~g~~~~v~~~sG~~Ai~~al~~l~~~Gd--~Vl~~--~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~ 144 (418)
T TIGR01326 69 LEGGVAALAVASGQAAITYAILNLAQAGD--NIVSS--SYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTK 144 (418)
T ss_pred HhCCCeEEEEccHHHHHHHHHHHHhCCCC--EEEEE--CCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCe
Confidence 33334678888888887777776664443 45554 466655 2344556778999988863 22333332 344
Q ss_pred EEEEcceeEe-eCCCcccccchHHHHHHHhhCCCceEE
Q 045642 270 MVIVGVHAVM-ANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 270 ~VllGAdav~-~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
.|++ +... +.|.+.. --.++-+|+.++++++|
T Consensus 145 ~V~l--e~p~NPtg~v~d---l~~I~~la~~~~i~liv 177 (418)
T TIGR01326 145 AVFA--ETIGNPAINVPD---IEAIAEVAHAHGVPLIV 177 (418)
T ss_pred EEEE--ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 4444 2221 1122221 24577789999999887
No 84
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=70.64 E-value=41 Score=33.14 Aligned_cols=99 Identities=17% Similarity=0.250 Sum_probs=58.2
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchH-HHHHhhcCCEEEEccee
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSA-VFAMISRVNMVIVGVHA 277 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsa-v~~~m~~vd~VllGAda 277 (406)
...+++|.|.+..+.. +..+... . +|++. .|.+.+.. ..+...|+++..++|.. +-..+++.+.|++ ..-
T Consensus 64 ~~~i~~t~G~~~~i~~-~~~~l~~--g-~vl~~--~p~y~~~~--~~~~~~g~~~~~~~d~~~l~~~~~~~~~v~i-~~p 134 (330)
T TIGR01140 64 AASVLPVNGAQEAIYL-LPRLLAP--G-RVLVL--APTYSEYA--RAWRAAGHEVVELPDLDRLPAALEELDVLVL-CNP 134 (330)
T ss_pred hhhEEECCCHHHHHHH-HHHHhCC--C-eEEEe--CCCcHHHH--HHHHHcCCEEEEeCCHHHHHhhcccCCEEEE-eCC
Confidence 3467777665555444 5555533 3 55554 57776643 33567899999998632 3334456665544 222
Q ss_pred EeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 278 VMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 278 v~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
--.-|.+...-.=..++-.|+.+++++++
T Consensus 135 ~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 163 (330)
T TIGR01140 135 NNPTGRLIPPETLLALAARLRARGGWLVV 163 (330)
T ss_pred CCCCCCCCCHHHHHHHHHHhHhcCCEEEE
Confidence 22445555544455577788889998775
No 85
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=70.35 E-value=87 Score=31.09 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=51.4
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch--------HHHHHhhcCC--EE
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS--------AVFAMISRVN--MV 271 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds--------av~~~m~~vd--~V 271 (406)
+++|-+.|..+...+......| =+|+|.+ +..-|..+...+...|+++..++.. .+...+..-+ ++
T Consensus 59 i~~~~~gt~~l~~~~~~l~~~~--~~vlv~~--~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~ 134 (368)
T PRK13479 59 VPLQGSGTFSVEAAIGSLVPRD--GKVLVPD--NGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITH 134 (368)
T ss_pred EEEcCCcHHHHHHHHHhccCCC--CeEEEEe--CCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcE
Confidence 3455555666666666665333 2555554 3334444456666789988887542 2222232111 12
Q ss_pred EEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 272 IVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 272 llGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
+.-++.=...|.+ +. ...++-+|+.++++++|=
T Consensus 135 v~~~~~~~~tG~~-~~--~~~i~~l~~~~~~~livD 167 (368)
T PRK13479 135 VALVHCETTTGIL-NP--LDEIAAVAKRHGKRLIVD 167 (368)
T ss_pred EEEEcccCccccc-cC--HHHHHHHHHHcCCEEEEE
Confidence 2222211223333 22 347888889999877663
No 86
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=70.00 E-value=11 Score=34.16 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=57.6
Q ss_pred EecCCCCcch---HHHHHHHHhCCCceEEEcchHHHH-HhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceE
Q 045642 230 IADGAPKFEG---HILAKELDKKGLKAIVITDSAVFA-MISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFV 305 (406)
Q Consensus 230 V~EsrP~~eG---~~~a~~L~~~GI~vt~I~Dsav~~-~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 305 (406)
+--||-+.-+ ..+|..|.+.|++|.+..-+++.. -+.+.|+||+||..-+ |..--.+++..-...+.-..+|+=
T Consensus 6 lYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~--~h~~~~~~~Fv~k~~e~L~~kP~A 83 (175)
T COG4635 6 LYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRY--GHFHEAVQSFVKKHAEALSTKPSA 83 (175)
T ss_pred EEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhh--hhhHHHHHHHHHHHHHHHhcCCce
Confidence 3344444433 356778889999999999998876 5788999999996543 667777888887777777888865
Q ss_pred Eec
Q 045642 306 VVA 308 (406)
Q Consensus 306 V~a 308 (406)
+.|
T Consensus 84 ~f~ 86 (175)
T COG4635 84 FFS 86 (175)
T ss_pred EEE
Confidence 544
No 87
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=69.74 E-value=25 Score=33.27 Aligned_cols=100 Identities=22% Similarity=0.359 Sum_probs=66.4
Q ss_pred HHHHHHhcccCcEE---EeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhh
Q 045642 190 AEQAMELIHQNEVI---LTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMIS 266 (406)
Q Consensus 190 ~~~a~~~I~~g~~I---LT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~ 266 (406)
..-..+++..++.| --+|+-.-+.+.|+ -+|.||+-|-.|..- +--..+|+....+++
T Consensus 103 ~~Dil~li~~~d~IkmI~~fg~m~p~v~~l~------ek~~v~~~er~~~~p-------------kr~t~~d~~e~~iLP 163 (250)
T COG2014 103 WFDILDLIQRDDKIKMIAEFGNMPPVVRTLK------EKFEVYVFERNPKLP-------------KRGTLSDTLEYQILP 163 (250)
T ss_pred hHHHHHHHcCCCceeEEEecCCCChHHHHhh------hheEEEEeccCccCc-------------ccccccchhhhhhcc
Confidence 33456778888754 44566444444443 479999999887642 123568889999999
Q ss_pred cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCcccccc
Q 045642 267 RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSL 316 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~ 316 (406)
++|.+++.|.++. | ||...-|.=....+=|+.+.||-.+.|.
T Consensus 164 ~~Dvii~SaStlv-N-------~T~d~~Ld~ak~ak~vvl~GPTa~l~pe 205 (250)
T COG2014 164 EVDVIIASASTLV-N-------GTLDMILDRAKKAKLVVLTGPTAQLLPE 205 (250)
T ss_pred cccEEEEechhhh-c-------CcHHHHHhhhccCcEEEEeCCCcccchh
Confidence 9999999987754 4 4555555444455666667777666553
No 88
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=69.66 E-value=79 Score=32.06 Aligned_cols=95 Identities=18% Similarity=0.186 Sum_probs=54.6
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-H-HHHHHHHhCCCceEEEcch---HHHHHh-hcCCEEEE
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-H-ILAKELDKKGLKAIVITDS---AVFAMI-SRVNMVIV 273 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~-~~a~~L~~~GI~vt~I~Ds---av~~~m-~~vd~Vll 273 (406)
.+.+++-|.+..+...|....+.|. +|++. ++.+.+ . .+...+...|++++++... .+...+ ++...|++
T Consensus 70 ~~~~~~~sG~~Ai~~al~al~~~Gd--~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l 145 (380)
T TIGR01325 70 ERAVATATGMSAIQAALMTLLQAGD--HVVAS--RSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFV 145 (380)
T ss_pred CcEEEECCHHHHHHHHHHHHhCCCC--EEEEe--cCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEE
Confidence 4567777777777777765554443 45553 444444 2 3344567789999988543 222223 23333333
Q ss_pred cceeEeeCCCcccccch----HHHHHHHhhCCCceEE
Q 045642 274 GVHAVMANGGVIAPAGL----HVLALAAKKHDVPFVV 306 (406)
Q Consensus 274 GAdav~~nG~vvnk~GT----~~lAl~Ak~~~vPv~V 306 (406)
- ...|..|+ -.++-+||.++++|+|
T Consensus 146 e--------~p~np~g~~~dl~~I~~la~~~gi~liv 174 (380)
T TIGR01325 146 E--------TPSNPLGELVDIAALAELAHAIGALLVV 174 (380)
T ss_pred E--------CCCCCCCeeeCHHHHHHHHHHcCCEEEE
Confidence 1 12233443 4567778999999886
No 89
>PLN02409 serine--glyoxylate aminotransaminase
Probab=69.61 E-value=1e+02 Score=31.37 Aligned_cols=98 Identities=10% Similarity=0.034 Sum_probs=49.7
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch--------HHHHHhhc----CC
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS--------AVFAMISR----VN 269 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds--------av~~~m~~----vd 269 (406)
+++|-+.+..+...+....+.| -+|++.+ |..-+...+..+...|+++..++.. .+...+.. -.
T Consensus 63 vi~~~~gt~a~~~a~~~~~~~G--d~Vlv~~--~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~ 138 (401)
T PLN02409 63 FIFPTTGTGAWESALTNTLSPG--DKVVSFR--IGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKI 138 (401)
T ss_pred EEEeCCcHHHHHHHHHhcCCCC--CEEEEeC--CCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCc
Confidence 4444444444444444444333 3577766 4444555556666778887777421 23333332 12
Q ss_pred EEEEcceeEeeCCCcccccchHHHHHH--HhhCCCceEE
Q 045642 270 MVIVGVHAVMANGGVIAPAGLHVLALA--AKKHDVPFVV 306 (406)
Q Consensus 270 ~VllGAdav~~nG~vvnk~GT~~lAl~--Ak~~~vPv~V 306 (406)
++++-.+.-...|.+.. -..++-+ |+.++++++|
T Consensus 139 k~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~g~~~vv 174 (401)
T PLN02409 139 KAVCVVHNETSTGVTND---LAGVRKLLDCAQHPALLLV 174 (401)
T ss_pred cEEEEEeecccccccCC---HHHHHHHHhhhccCcEEEE
Confidence 33333444444444433 2234455 7888877766
No 90
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=69.34 E-value=16 Score=32.44 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=42.2
Q ss_pred EecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 230 IADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 230 V~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
-.+..|+..|...|..|++.|++|.++. +|.|++ +|.....--...++-.|+++++|+++=.
T Consensus 30 ~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------~~~v~i-------~~~~~~~~~~~~~~~~~~~~~~~v~~D~ 91 (196)
T cd00287 30 DTEERAGGGAANVAVALARLGVSVTLVG----------ADAVVI-------SGLSPAPEAVLDALEEARRRGVPVVLDP 91 (196)
T ss_pred eeeecCCCcHHHHHHHHHHCCCcEEEEE----------ccEEEE-------ecccCcHHHHHHHHHHHHHcCCeEEEeC
Confidence 3455677778999999999999999998 444444 4433221223445567888999987643
No 91
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=69.33 E-value=1.2e+02 Score=30.48 Aligned_cols=101 Identities=13% Similarity=0.184 Sum_probs=52.8
Q ss_pred CcEEEeccChHHHHHHHHHHHH--cCCceEEEEecCCCCcchH-H-HHHHHHhCCCceEEEcc--------hHHHHHh-h
Q 045642 200 NEVILTLGHSKFVKEFLCAAKE--KKRSFEVFIADGAPKFEGH-I-LAKELDKKGLKAIVITD--------SAVFAMI-S 266 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~--~~~~f~ViV~EsrP~~eG~-~-~a~~L~~~GI~vt~I~D--------sav~~~m-~ 266 (406)
.++++|-|.+..+..++..... .+..-+|++.+ |.+.+. . ....+...|+++..++- ..+...+ +
T Consensus 79 ~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 156 (398)
T TIGR03392 79 ENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP 156 (398)
T ss_pred CeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECC--cchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhcc
Confidence 3577787776666666555421 12233566653 444342 2 22334567988887742 1222333 2
Q ss_pred cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 267 RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+...|++ ++.=...|.+.. -..++-+||.++++++|
T Consensus 157 ~t~lv~i-~~~~n~tG~~~~---~~~i~~~~~~~~~~~iv 192 (398)
T TIGR03392 157 RTRILAL-GQMSNVTGGCPD---LARAITLAHQYGAVVVV 192 (398)
T ss_pred CceEEEE-ECccccccccCC---HHHHHHHHHHcCCEEEE
Confidence 3333333 333333444432 24477788999988876
No 92
>PRK07179 hypothetical protein; Provisional
Probab=69.09 E-value=91 Score=31.67 Aligned_cols=133 Identities=18% Similarity=0.164 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHH---H--HH-HH---HHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCC
Q 045642 165 KKLKSELIKAVNEL---I--ED-IN---TCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAP 235 (406)
Q Consensus 165 ~~~k~~l~~~i~~~---~--~e-~~---~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP 235 (406)
+++++.+.+.++++ . .. .. .....+.+..++++.....|+|.|.+..+..+|+.....| -.|++. .+
T Consensus 71 p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~~l~~~g--~~v~~~--~~ 146 (407)
T PRK07179 71 PDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQTIADPN--TPVYID--FF 146 (407)
T ss_pred HHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCC--CEEEEE--CC
Confidence 56777777777654 1 00 00 1233334444555655567888777777777776665333 345552 23
Q ss_pred CcchHHHHHHHHhCCCceEEE--cc-hHHHHHhhc-CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 236 KFEGHILAKELDKKGLKAIVI--TD-SAVFAMISR-VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 236 ~~eG~~~a~~L~~~GI~vt~I--~D-sav~~~m~~-vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
.... +...+...|+++... .| ..+...+.+ -.++|+ .+.+....|.+... ..++-+|+.+++.+++
T Consensus 147 ~h~s--~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~-v~~v~n~tG~i~pl--~~I~~l~~~~~~~liv 216 (407)
T PRK07179 147 AHMS--LWEGVRAAGAQAHPFRHNDVDHLRRQIERHGPGIIV-VDSVYSTTGTIAPL--ADIVDIAEEFGCVLVV 216 (407)
T ss_pred cCHH--HHHHHHHCCCeEEEecCCCHHHHHHHHHhcCCeEEE-ECCCCCCCCccccH--HHHHHHHHHcCCEEEE
Confidence 2222 223344567776655 23 334444543 223222 35555555555553 4677788999987665
No 93
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=68.76 E-value=42 Score=34.48 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=53.8
Q ss_pred hcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH-H-HHHHHHhCCCceEEEcch---HHHHHhh-cCC
Q 045642 196 LIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH-I-LAKELDKKGLKAIVITDS---AVFAMIS-RVN 269 (406)
Q Consensus 196 ~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~-~-~a~~L~~~GI~vt~I~Ds---av~~~m~-~vd 269 (406)
++.....|++-|....+...+....+.|. +|++. .|.+.|. . +...+...|+++.++... .+...+. +..
T Consensus 76 l~g~~~~i~~ssG~~Ai~~~l~all~~GD--~Vi~~--~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tk 151 (398)
T PRK08249 76 LEGAEAATAFSTGMAAISNTLYTFLKPGD--RVVSI--KDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCD 151 (398)
T ss_pred HhCCCeEEEeCChHHHHHHHHHHhcCCCC--EEEEc--CCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCe
Confidence 44434556666666555555555543443 45543 4566652 2 333467789998876532 2333332 344
Q ss_pred EEEEcceeEeeCCCcccccch----HHHHHHHhhCCCceEE
Q 045642 270 MVIVGVHAVMANGGVIAPAGL----HVLALAAKKHDVPFVV 306 (406)
Q Consensus 270 ~VllGAdav~~nG~vvnk~GT----~~lAl~Ak~~~vPv~V 306 (406)
.|++- ...|..|. -.++-+|+.++++++|
T Consensus 152 lV~ie--------~p~NPtg~v~dl~~I~~la~~~gi~liv 184 (398)
T PRK08249 152 LLYLE--------TPTNPTLKIVDIERLAAAAKKVGALVVV 184 (398)
T ss_pred EEEEE--------CCCCCCCccCCHHHHHHHHHHcCCEEEE
Confidence 44431 12234443 3477789999998876
No 94
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=68.72 E-value=15 Score=30.74 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=51.8
Q ss_pred EEEeccChHHHHHHHHHHHHc-CCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch---HHHHHh----h--cCC-E
Q 045642 202 VILTLGHSKFVKEFLCAAKEK-KRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS---AVFAMI----S--RVN-M 270 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~-~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds---av~~~m----~--~vd-~ 270 (406)
+|-||.....+.++|....++ ...++|+|++..+..+-...++++.+.+.+++++.-. ..+..+ + +.+ .
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~~i 82 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGEYI 82 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SSEE
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccccccccccccccccceeEE
Confidence 466788888889999887766 5789999999988666677788887666777766432 222222 2 233 3
Q ss_pred EEEcceeEeeCC
Q 045642 271 VIVGVHAVMANG 282 (406)
Q Consensus 271 VllGAdav~~nG 282 (406)
+++-+|.++..+
T Consensus 83 ~~ld~D~~~~~~ 94 (169)
T PF00535_consen 83 LFLDDDDIISPD 94 (169)
T ss_dssp EEEETTEEE-TT
T ss_pred EEeCCCceEcHH
Confidence 444666666654
No 95
>PRK09932 glycerate kinase II; Provisional
Probab=68.65 E-value=6.9 Score=40.19 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=35.5
Q ss_pred HHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccc
Q 045642 263 AMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHEL 313 (406)
Q Consensus 263 ~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~ 313 (406)
..++.+|.||.|==.+-.. ++.. -....+|-.|+.++|||+++|++.+.
T Consensus 280 ~~l~~ADlVITGEG~~D~Q-t~~G-K~p~~Va~~A~~~~~Pvi~i~G~~~~ 328 (381)
T PRK09932 280 QAVQGAALVITGEGRIDSQ-TAGG-KAPLGVASVAKQFNVPVIGIAGVLGD 328 (381)
T ss_pred HHhccCCEEEECCCccccc-ccCC-ccHHHHHHHHHHcCCCEEEEecccCC
Confidence 4566899999986554332 2333 34567888999999999999998654
No 96
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=68.61 E-value=55 Score=34.16 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=55.5
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-H-HHHHHHHhCCCceEEEcch----HHHHHhhcCCEEEEc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-H-ILAKELDKKGLKAIVITDS----AVFAMISRVNMVIVG 274 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~-~~a~~L~~~GI~vt~I~Ds----av~~~m~~vd~VllG 274 (406)
..+++-+.+..+...|....+.|. +|++..+ .+.| . .+...|...|+.++++.|. ++-..+..-+++|+
T Consensus 86 ~av~~sSG~aAi~~al~all~~Gd--~Vv~~~~--~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~- 160 (436)
T PRK07812 86 AALLLASGQAAETFAILNLAGAGD--HIVSSPR--LYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFF- 160 (436)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEeCC--cchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEE-
Confidence 457766666666666766554443 5666653 3445 2 3344577789999998531 22223332234433
Q ss_pred ceeEeeCCCcccccch----HHHHHHHhhCCCceEEec
Q 045642 275 VHAVMANGGVIAPAGL----HVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 275 Adav~~nG~vvnk~GT----~~lAl~Ak~~~vPv~V~a 308 (406)
.+. +.|..|. -.++-+||.+|++|+|=+
T Consensus 161 ie~------~sNp~G~v~Dl~~I~~la~~~gi~liVD~ 192 (436)
T PRK07812 161 AET------ISNPQIDVLDIPGVAEVAHEAGVPLIVDN 192 (436)
T ss_pred EEC------CCCCCCeecCHHHHHHHHHHcCCEEEEEC
Confidence 222 2333333 358889999999888743
No 97
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=68.40 E-value=67 Score=32.63 Aligned_cols=96 Identities=10% Similarity=0.111 Sum_probs=51.2
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH-HH-HHHHHhCCCceEEEcch---HHHHHhhcCCEEEEc
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH-IL-AKELDKKGLKAIVITDS---AVFAMISRVNMVIVG 274 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~-~~-a~~L~~~GI~vt~I~Ds---av~~~m~~vd~VllG 274 (406)
.+.|++-|.+..+..++. ..+.| -+|++. .|.+.|- .+ ...+...|++++.+.-. .+-..+..=+++|+-
T Consensus 63 ~~~l~~~sG~~al~~~l~-ll~~G--d~Vl~~--~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~l 137 (378)
T TIGR01329 63 DRAFAFSSGMAALDVITR-LLNNG--DEIIAG--DDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLL 137 (378)
T ss_pred CcEEEECCHHHHHHHHHH-HhCCC--CEEEEc--CCCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEE
Confidence 345666555544444443 44333 356654 3556552 33 33456689999988632 233333322333332
Q ss_pred ceeEeeCCCcccccc----hHHHHHHHhhCCCceEEe
Q 045642 275 VHAVMANGGVIAPAG----LHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 275 Adav~~nG~vvnk~G----T~~lAl~Ak~~~vPv~V~ 307 (406)
. ...|..| -..++-+||+++++++|=
T Consensus 138 e-------~psnptg~v~dl~~I~~la~~~g~~vivD 167 (378)
T TIGR01329 138 E-------SPTNPLQKIVDIRKISEMAHAQNALVVVD 167 (378)
T ss_pred E-------CCCCCCCeeecHHHHHHHHHHcCCEEEEE
Confidence 2 2334444 345777889999888873
No 98
>PLN02206 UDP-glucuronate decarboxylase
Probab=68.20 E-value=18 Score=37.80 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=60.6
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cchHHHHHhhcCCEEEEccee
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TDSAVFAMISRVNMVIVGVHA 277 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~Dsav~~~m~~vd~VllGAda 277 (406)
.+..||+.|.+..|=.-|..... .+..+|++++..+..........+.. ..+.++ .|- ....+.++|.||=-|..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll-~~G~~V~~ld~~~~~~~~~~~~~~~~--~~~~~i~~D~-~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLM-ARGDSVIVVDNFFTGRKENVMHHFSN--PNFELIRHDV-VEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHH-HCcCEEEEEeCCCccchhhhhhhccC--CceEEEECCc-cChhhcCCCEEEEeeee
Confidence 45789999988777766655442 23467887764322111111111222 234444 221 22234568887766532
Q ss_pred EeeCCC--------cccccchHHHHHHHhhCCCceEEecCC
Q 045642 278 VMANGG--------VIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 278 v~~nG~--------vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
...... -.|-.||..+.-+|+..+++|+.++..
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~ 234 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 234 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCh
Confidence 211111 156789999999999999987766554
No 99
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=68.12 E-value=1.4e+02 Score=30.07 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=50.0
Q ss_pred CcEEEeccChHHHHHHHHHHHH--cCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc--------hHHHHHhh-cC
Q 045642 200 NEVILTLGHSKFVKEFLCAAKE--KKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD--------SAVFAMIS-RV 268 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~--~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D--------sav~~~m~-~v 268 (406)
.++++|.|.+..+..++..... .++.-+|++.+.........+.......|+++..++- ..+...+. +.
T Consensus 81 ~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~ 160 (403)
T TIGR01979 81 EEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKT 160 (403)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccCC
Confidence 3577776655554444443321 1234466666443221111222233457888777742 12222222 33
Q ss_pred CEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 269 NMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 269 d~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
..|++. +.-...|.+.. -..++-.|+.++++++|=
T Consensus 161 ~lv~~~-~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD 195 (403)
T TIGR01979 161 KLVAIT-HVSNVLGTVNP---VEEIAKLAHQVGAKVLVD 195 (403)
T ss_pred eEEEEE-cccccccccCC---HHHHHHHHHHcCCEEEEE
Confidence 333332 22223343333 345777889999988773
No 100
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=67.49 E-value=1.3e+02 Score=29.56 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=51.0
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc--------hHHHHHhh--cCCEE
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD--------SAVFAMIS--RVNMV 271 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D--------sav~~~m~--~vd~V 271 (406)
+++|-|.+..+..++.... ++.-+|++.+ |..-+......+...|.+++.++. ..+...+. +...|
T Consensus 53 ~~~~~~~t~al~~~~~~~~--~~g~~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v 128 (356)
T cd06451 53 FLLSGSGTGAMEAALSNLL--EPGDKVLVGV--NGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAV 128 (356)
T ss_pred EEEecCcHHHHHHHHHHhC--CCCCEEEEec--CCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEE
Confidence 3455544555555554443 2334666654 222233344556667888877741 23333332 44444
Q ss_pred EEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 272 IVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 272 llGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
++ .+.-...|.+.. --.++-+|+++++++++=
T Consensus 129 ~i-~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D 160 (356)
T cd06451 129 TL-THNETSTGVLNP---LEGIGALAKKHDALLIVD 160 (356)
T ss_pred EE-eccCCCcccccC---HHHHHHHHHhcCCEEEEe
Confidence 44 333334444332 334777888999988873
No 101
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=67.37 E-value=48 Score=34.71 Aligned_cols=151 Identities=13% Similarity=0.192 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHhccc-CcEEEeccChHHHHHH-HHHHHHcCCceEEE
Q 045642 165 KKLKSELIKAVNELIEDINTCREG-------------IAEQAMELIHQ-NEVILTLGHSKFVKEF-LCAAKEKKRSFEVF 229 (406)
Q Consensus 165 ~~~k~~l~~~i~~~~~e~~~~~~~-------------I~~~a~~~I~~-g~~ILT~g~S~tV~~~-L~~A~~~~~~f~Vi 229 (406)
.++|+..++.+++++++.....+. ..+...+++.. |..-++.|.|-+.+++ |..+.+ ....+|+
T Consensus 39 ~~ik~~~~~~ld~~l~~~~~~~~~~g~~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~kS~~~eeigl~~~L~-~~g~~~~ 117 (432)
T TIGR00273 39 KEIKLKVLENLDFYLDQLKENVTQRGGHVYYAKTAEEARKIIGKVAQEKNGKKVVKSKSMVSEEIGLNEVLE-KIGIEVW 117 (432)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHhCCCEEEEcCchHHHHhCCHHHHH-hCCCeee
Confidence 788999999999999886653332 33334445544 3334457888888875 444442 2334444
Q ss_pred Eec----------CCCC-------cchH-HHHHHHHh-CCCceEEEcchH----HH----HHhhcCCEEEEcce-eEeeC
Q 045642 230 IAD----------GAPK-------FEGH-ILAKELDK-KGLKAIVITDSA----VF----AMISRVNMVIVGVH-AVMAN 281 (406)
Q Consensus 230 V~E----------srP~-------~eG~-~~a~~L~~-~GI~vt~I~Dsa----v~----~~m~~vd~VllGAd-av~~n 281 (406)
-++ .+|. .-.+ ..++-+.+ .|.+... .... +. -.+..+|..|.||+ +|..+
T Consensus 118 etdlge~i~ql~~~~pshiv~Paih~~r~~i~~~f~~~~~~~~~~-~~~~l~~~~r~~lR~~~~~advgit~an~aiAet 196 (432)
T TIGR00273 118 ETDLGELILQLDGDPPSHIVVPALHKNRQQIGEILKERLGYEGEE-SPEVLAREARKFMREKFLSADIGISGCNFAIAET 196 (432)
T ss_pred eCccHHHHhhhccCCCceeeeccccCCHHHHHHHHHHhccCCCCC-CHHHHHHHHHHHHHHHHhcCCEEEeccchHhhcC
Confidence 332 1221 0111 22222222 2333211 1111 11 12236999999999 99999
Q ss_pred CCcccccchHHHHHHHhhCCCceEEecCCccccccCC
Q 045642 282 GGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYP 318 (406)
Q Consensus 282 G~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~~ 318 (406)
|++++..|....-+++ ..-.-++++.+.-|+.|.+.
T Consensus 197 Gtlv~~~~~gn~R~~~-~lP~~hI~vvg~~kivp~~~ 232 (432)
T TIGR00273 197 GSIFLVENEGNGRLST-TLPKTHIAVMGIEKIVPTFD 232 (432)
T ss_pred ceEEEecCCCCchhhc-cCCCeEEEEEEHHHccCCHH
Confidence 9999988887744444 44555677788889888643
No 102
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=67.27 E-value=71 Score=31.87 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=57.2
Q ss_pred CcEEEeccChHHHHHHHHHHHH-cCCceEEEEecCCCCcchHHHHHHHH-hCCCceEEEcc--------hHHHHHh-hcC
Q 045642 200 NEVILTLGHSKFVKEFLCAAKE-KKRSFEVFIADGAPKFEGHILAKELD-KKGLKAIVITD--------SAVFAMI-SRV 268 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~-~~~~f~ViV~EsrP~~eG~~~a~~L~-~~GI~vt~I~D--------sav~~~m-~~v 268 (406)
.++++|.+.+..+..++..... ..+.-+|+++....... +.....+. ..|+++++|+. ..+...+ ++.
T Consensus 62 ~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~-~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~ 140 (371)
T PF00266_consen 62 EEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSN-RYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDT 140 (371)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHH-HHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTE
T ss_pred cccccccccchhhhhhhhcccccccccccccccccccccc-ccccccccccchhhhccccccccchhhhhhhhhhhcccc
Confidence 4567776666655555555521 23334666665442222 23344444 78999988864 2233333 455
Q ss_pred CEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 269 NMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 269 d~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+.|.+-. .-..+| +.+. --.++-+||+++++++|
T Consensus 141 ~lv~~~~-~~~~tG-~~~p--i~~I~~~~~~~~~~~~v 174 (371)
T PF00266_consen 141 RLVSISH-VENSTG-VRNP--IEEIAKLAHEYGALLVV 174 (371)
T ss_dssp SEEEEES-BETTTT-BBSS--HHHHHHHHHHTTSEEEE
T ss_pred ceEEeec-cccccc-EEee--eceehhhhhccCCceeE
Confidence 6665543 223444 3443 44677888999998887
No 103
>PRK05968 hypothetical protein; Provisional
Probab=67.13 E-value=96 Score=31.64 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=55.6
Q ss_pred hcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-H-HHHHHHHhCCCceEEEcc---hHHHHHhhcCCE
Q 045642 196 LIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-H-ILAKELDKKGLKAIVITD---SAVFAMISRVNM 270 (406)
Q Consensus 196 ~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~-~~a~~L~~~GI~vt~I~D---sav~~~m~~vd~ 270 (406)
+......+++-+.+..+...|....+.|. +|++.+ |.+.+ . .+...+...|++++++.- ..+...+++...
T Consensus 75 l~g~~~av~~~sG~~Ai~~al~al~~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~tkl 150 (389)
T PRK05968 75 LEGAEDARGFASGMAAISSTVLSFVEPGD--RIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKALPGAKL 150 (389)
T ss_pred HhCCCcEEEECCHHHHHHHHHHHHhCCCC--EEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhcccCCE
Confidence 44433556665555555545544443343 555554 45544 3 344567778999988742 233333455555
Q ss_pred EEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 271 VIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 271 VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
|++- . ..|-+....=-..++-+||.++++|+|=
T Consensus 151 V~ie--~--pt~~~~~~~dl~~i~~la~~~gi~vivD 183 (389)
T PRK05968 151 LYLE--S--PTSWVFELQDVAALAALAKRHGVVTMID 183 (389)
T ss_pred EEEE--C--CCCCCCcHHHHHHHHHHHHHcCCEEEEE
Confidence 5542 1 2222222222234677889999988873
No 104
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=66.84 E-value=19 Score=39.04 Aligned_cols=112 Identities=15% Similarity=0.154 Sum_probs=61.2
Q ss_pred cccCcEEEeccChHHHHHHHH-HHHHcCCceEEEEecCCCCcchHHHHHHHHh-----CCC----ceEEE-cc----hHH
Q 045642 197 IHQNEVILTLGHSKFVKEFLC-AAKEKKRSFEVFIADGAPKFEGHILAKELDK-----KGL----KAIVI-TD----SAV 261 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~-~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~-----~GI----~vt~I-~D----sav 261 (406)
..+|.+||+.|.++.+=..+. .+.+. .++|+++.-.+ .....++..+.+ .|. .+.++ .| ..+
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~--G~~Vval~Rn~-ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKL--GFRVRAGVRSA-QRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHC--CCeEEEEeCCH-HHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 347889999998766655544 44434 46777664332 222334444432 121 12222 22 244
Q ss_pred HHHhhcCCEEEEcceeEeeC-----C-CcccccchHHHHHHHhhCCCceEEecCCc
Q 045642 262 FAMISRVNMVIVGVHAVMAN-----G-GVIAPAGLHVLALAAKKHDVPFVVVASTH 311 (406)
Q Consensus 262 ~~~m~~vd~VllGAdav~~n-----G-~vvnk~GT~~lAl~Ak~~~vPv~V~aes~ 311 (406)
...+.++|.||..+-....+ + --+|..|+..+.-+|+..++.-+|+..+.
T Consensus 154 ~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSi 209 (576)
T PLN03209 154 GPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSL 209 (576)
T ss_pred HHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 55677788877654221100 0 11356788888888888887666655553
No 105
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.78 E-value=44 Score=34.88 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=54.8
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEe
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVM 279 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~ 279 (406)
+..|+.+|...+=..+.+.+.+.| .+|.+.|..+...=..+...|.+.|+.+..-.+. ...+.+.|.||++.-.-
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~--~~~~~~~dlVV~Spgi~- 88 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVKLVLGENY--LDKLDGFDVIFKTPSMR- 88 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC--hHHhccCCEEEECCCCC-
Confidence 456777666554444444444344 6899999876533223345588899877765432 23346788888874222
Q ss_pred eCCCcccccchHHHHHHHhhCCCceE
Q 045642 280 ANGGVIAPAGLHVLALAAKKHDVPFV 305 (406)
Q Consensus 280 ~nG~vvnk~GT~~lAl~Ak~~~vPv~ 305 (406)
. +.+.-..|+..++|++
T Consensus 89 ~---------~~p~~~~a~~~~i~i~ 105 (458)
T PRK01710 89 I---------DSPELVKAKEEGAYIT 105 (458)
T ss_pred C---------CchHHHHHHHcCCcEE
Confidence 2 2345566677777765
No 106
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=66.33 E-value=96 Score=30.64 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=54.0
Q ss_pred CcEEEeccChHHHHHHHHHHHHc--CCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc--------hHHHHHhhcCC
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEK--KRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD--------SAVFAMISRVN 269 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~--~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D--------sav~~~m~~vd 269 (406)
...++|-|.+.....++..+... +++-+|++.+. .... ..+.+...|+++..++- ..+-..+..-+
T Consensus 77 ~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~--~h~s--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~ 152 (371)
T PRK13520 77 AYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPES--AHFS--FDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNT 152 (371)
T ss_pred CCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCc--chHH--HHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhCC
Confidence 34677777776666666665432 23346777653 2222 23333456888887752 12333333333
Q ss_pred EEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 270 MVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 270 ~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+.++....-...|.+ .. --.++-+|+.++++|+|
T Consensus 153 ~~vi~~~~~~~tG~~-~~--l~~I~~l~~~~g~~liv 186 (371)
T PRK13520 153 IGIVGIAGTTELGQV-DP--IPELSKIALENGIFLHV 186 (371)
T ss_pred EEEEEEcCCcCCccc-CC--HHHHHHHHHHcCCCEEE
Confidence 334433332333433 33 34577789999999887
No 107
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=66.07 E-value=1.1e+02 Score=31.10 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhcc---cCcEEEeccChHHHHHHHHHHH--HcCCceEEEEecCCCCcch-H-HHHHHHHhCCCceE
Q 045642 182 INTCREGIAEQAMELIH---QNEVILTLGHSKFVKEFLCAAK--EKKRSFEVFIADGAPKFEG-H-ILAKELDKKGLKAI 254 (406)
Q Consensus 182 ~~~~~~~I~~~a~~~I~---~g~~ILT~g~S~tV~~~L~~A~--~~~~~f~ViV~EsrP~~eG-~-~~a~~L~~~GI~vt 254 (406)
++..++.+++ ++. ..++++|.|.+..+..++.... ..++.-+|++.+. .+.+ . .........|+++.
T Consensus 69 ~~~~r~~la~----~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~--~~~s~~~~~~~~~~~~g~~v~ 142 (406)
T PRK09295 69 MENVRKQAAL----FINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEM--EHHANIVPWQMLCARVGAELR 142 (406)
T ss_pred HHHHHHHHHH----HcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcc--hhhHHHHHHHHHHHHcCcEEE
Confidence 4444455544 332 3467888766655554444321 1123335666642 2222 1 12222345799888
Q ss_pred EEcc--------hHHHHHhh-cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 255 VITD--------SAVFAMIS-RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 255 ~I~D--------sav~~~m~-~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
.++- ..+...+. +...|++. +.-...|.+.. ...++-.||.++++|+|
T Consensus 143 ~v~~~~~~~~d~~~l~~~i~~~t~lv~l~-~~~n~tG~~~~---~~~i~~~~~~~~~~viv 199 (406)
T PRK09295 143 VIPLNPDGTLQLETLPALFDERTRLLAIT-HVSNVLGTENP---LAEMIALAHQHGAKVLV 199 (406)
T ss_pred EEecCCCCCCCHHHHHHhcCCCcEEEEEe-cchhcccccCC---HHHHHHHHHHcCCEEEE
Confidence 8752 12333332 33334333 33334444432 24577788889887765
No 108
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=66.07 E-value=1.3e+02 Score=29.73 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=54.3
Q ss_pred cEEEeccChHHHHHHHHHHHHc-CCceEEEEecCCCCcchH-HHHHHH-HhCCCceEEEcch--------HHHHHhh-cC
Q 045642 201 EVILTLGHSKFVKEFLCAAKEK-KRSFEVFIADGAPKFEGH-ILAKEL-DKKGLKAIVITDS--------AVFAMIS-RV 268 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~-~~~f~ViV~EsrP~~eG~-~~a~~L-~~~GI~vt~I~Ds--------av~~~m~-~v 268 (406)
.+++|-|.+..+..++..+... +++-+|++.+ |.+-+. .....+ ...|+++.+|+-. .+...+. +.
T Consensus 63 ~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~ 140 (373)
T cd06453 63 EIIFTRNTTEAINLVAYGLGRANKPGDEIVTSV--MEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERT 140 (373)
T ss_pred eEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECc--chhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCc
Confidence 5667777776777777666531 1334566654 444442 222333 3678888877421 1222222 34
Q ss_pred CEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 269 NMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 269 d~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
..|++ ...-...|.+.. + -.++-+|+.+++++++=+
T Consensus 141 ~~v~~-~~~~~~tG~~~~-~--~~i~~~~~~~~~~li~D~ 176 (373)
T cd06453 141 KLVAV-THVSNVLGTINP-V--KEIGEIAHEAGVPVLVDG 176 (373)
T ss_pred eEEEE-eCcccccCCcCC-H--HHHHHHHHHcCCEEEEEh
Confidence 44443 222222343332 2 367888899999888743
No 109
>PRK07503 methionine gamma-lyase; Provisional
Probab=65.89 E-value=79 Score=32.46 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=52.8
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch--HHHHHHHHhCCCceEEEcc---hHHHHHh-hcCCEEEEc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG--HILAKELDKKGLKAIVITD---SAVFAMI-SRVNMVIVG 274 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG--~~~a~~L~~~GI~vt~I~D---sav~~~m-~~vd~VllG 274 (406)
..|++-|.+..+..+|......| -+|++. .|.+.+ ..+...+...|+++..+.- ..+...+ ++...|++
T Consensus 82 ~~i~~~sG~~Al~~~l~~ll~~G--d~Viv~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~l- 156 (403)
T PRK07503 82 AAVALASGMGAITATLWTLLRPG--DEVIVD--QTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYF- 156 (403)
T ss_pred cEEEEcCHHHHHHHHHHHHcCCC--CEEEEc--cCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEE-
Confidence 45666666666555555444334 356663 355544 2334456778999888743 2233333 23434433
Q ss_pred ceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 275 VHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 275 Adav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
..-.-..|.+.. --.++-+|+.+++++++
T Consensus 157 e~p~NPtG~~~d---i~~I~~la~~~gi~lIv 185 (403)
T PRK07503 157 ETPANPNMRLVD---IAAVAEIAHGAGAKVVV 185 (403)
T ss_pred eCCCCCCCeeeC---HHHHHHHHHHcCCEEEE
Confidence 212122233322 24677788999998887
No 110
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=65.56 E-value=7.7 Score=39.76 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=35.8
Q ss_pred HHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCcccc
Q 045642 263 AMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELC 314 (406)
Q Consensus 263 ~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~ 314 (406)
..++++|.||.|==++-.. ++..| ....+|-.|+.++|||+++|++....
T Consensus 279 ~~l~~ADlVITGEG~~D~Q-tl~GK-~p~~Va~~A~~~~vPviai~G~v~~~ 328 (375)
T TIGR00045 279 QKIKDADLVITGEGRLDRQ-SLMGK-APVGVAKRAKKYGVPVIAIAGSLGDG 328 (375)
T ss_pred HHhcCCCEEEECCCccccc-ccCCc-hHHHHHHHHHHhCCeEEEEecccCCC
Confidence 4456899999986554321 23333 56778889999999999999986543
No 111
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=65.25 E-value=86 Score=32.01 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=57.0
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-HHHHHHHHhCCCceEEE-cc-hHHHHHhhc-CCEEE
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-HILAKELDKKGLKAIVI-TD-SAVFAMISR-VNMVI 272 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~~~a~~L~~~GI~vt~I-~D-sav~~~m~~-vd~Vl 272 (406)
....+.|+|-|....+...|....+.|. +|++. .|.+.+ ....+.+...|+++..+ +| ..+...+.. -+++|
T Consensus 66 ~g~~~~l~~~sG~~Ai~~~l~~ll~~GD--~Vlv~--~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV 141 (385)
T PRK08574 66 EGGVDALAFNSGMAAISTLFFSLLKAGD--RVVLP--MEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLV 141 (385)
T ss_pred hCCCcEEEeCCHHHHHHHHHHHHhCCCC--EEEEc--CCCchhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEE
Confidence 3334567776666666666665554443 45543 466655 45555567789988765 23 334444433 23333
Q ss_pred EcceeEe-eCCCcccccchHHHHHHHhhCCCceEE
Q 045642 273 VGVHAVM-ANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 273 lGAdav~-~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+ .+... ..|.++. --.++-+||.++++++|
T Consensus 142 ~-ie~p~NPtG~v~d---l~~I~~la~~~gi~liv 172 (385)
T PRK08574 142 F-IETMTNPTLKVID---VPEVAKAAKELGAILVV 172 (385)
T ss_pred E-EECCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 3 23322 2333333 23677789999998886
No 112
>CHL00194 ycf39 Ycf39; Provisional
Probab=65.17 E-value=41 Score=32.91 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=61.5
Q ss_pred EEEeccChHHHHHHHHHH-HHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE--cc-hHHHHHhhcCCEEEEccee
Q 045642 202 VILTLGHSKFVKEFLCAA-KEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI--TD-SAVFAMISRVNMVIVGVHA 277 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A-~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I--~D-sav~~~m~~vd~VllGAda 277 (406)
+||..|.++.+=..|..+ .++| ++|+++.-.+. -+..|...|+++... .| ..+...+..+|.|+--+..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g--~~V~~l~R~~~-----~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG--YQVRCLVRNLR-----KASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC--CeEEEEEcChH-----HhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 578888877776655444 3333 67776643321 123444557665432 23 3566778889988865432
Q ss_pred EeeCC---CcccccchHHHHHHHhhCCCceEEecCC
Q 045642 278 VMANG---GVIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 278 v~~nG---~vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
...+. .-+|..|+..+.-+|++.++.-+|...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 75 RPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 22211 1235678899999999999876666554
No 113
>PRK07568 aspartate aminotransferase; Provisional
Probab=65.12 E-value=83 Score=31.60 Aligned_cols=96 Identities=22% Similarity=0.368 Sum_probs=51.9
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc---h--------HHHHHh
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD---S--------AVFAMI 265 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D---s--------av~~~m 265 (406)
+....+++|-|.+..+..++......| -+|++.+ |.+.+.. ..+...|+++..++- . .+...+
T Consensus 86 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vl~~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~ 159 (397)
T PRK07568 86 VEPDEILITNGGSEAILFAMMAICDPG--DEILVPE--PFYANYN--GFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLI 159 (397)
T ss_pred CCcceEEEcCChHHHHHHHHHHhcCCC--CEEEEec--CCCccHH--HHHHHcCCEEEEeecCcccCCCCCCHHHHHHhc
Confidence 344567788777766665555444333 3566654 6655432 224557888776641 1 121222
Q ss_pred -hcCCEEEEcceeEeeCCCcccccch-------HHHHHHHhhCCCceEE
Q 045642 266 -SRVNMVIVGVHAVMANGGVIAPAGL-------HVLALAAKKHDVPFVV 306 (406)
Q Consensus 266 -~~vd~VllGAdav~~nG~vvnk~GT-------~~lAl~Ak~~~vPv~V 306 (406)
+++.+|++ .| .-|..|+ ..++-.|+++++++++
T Consensus 160 ~~~~~~v~i------~~--p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~ 200 (397)
T PRK07568 160 TPKTKAILI------SN--PGNPTGVVYTKEELEMLAEIAKKHDLFLIS 200 (397)
T ss_pred CccceEEEE------EC--CCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 22333322 22 2366675 3477778889987765
No 114
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=64.81 E-value=98 Score=29.02 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=45.7
Q ss_pred cCcEEEe-ccChHHHHHHHHHHHHcCCceEEEEec---------------------CCCCcch--HHHHHHHHhCCCceE
Q 045642 199 QNEVILT-LGHSKFVKEFLCAAKEKKRSFEVFIAD---------------------GAPKFEG--HILAKELDKKGLKAI 254 (406)
Q Consensus 199 ~g~~ILT-~g~S~tV~~~L~~A~~~~~~f~ViV~E---------------------srP~~eG--~~~a~~L~~~GI~vt 254 (406)
.|.++.+ .|+|..|-+-|..-. ..-.+.+|++- |..+.-. ..++..+++.|+++.
T Consensus 39 ~gkv~V~G~GkSG~Igkk~Aa~L-~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~li 117 (202)
T COG0794 39 KGKVFVTGVGKSGLIGKKFAARL-ASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLI 117 (202)
T ss_pred CCcEEEEcCChhHHHHHHHHHHH-HccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEE
Confidence 4555554 889999888775544 22344555543 2222111 467889999999888
Q ss_pred EEcchHHHHHhhcCCEEEE
Q 045642 255 VITDSAVFAMISRVNMVIV 273 (406)
Q Consensus 255 ~I~Dsav~~~m~~vd~Vll 273 (406)
-|+-..=+.+-+..|.|+.
T Consensus 118 aiT~~~~SsLak~aDvvl~ 136 (202)
T COG0794 118 AITSNPDSSLAKAADVVLV 136 (202)
T ss_pred EEeCCCCChHHHhcCeEEE
Confidence 7765554555556777765
No 115
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=64.64 E-value=13 Score=33.34 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHH
Q 045642 173 KAVNELIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHI 241 (406)
Q Consensus 173 ~~i~~~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~ 241 (406)
+....|.++++...+.+.+...++-..|..|..||.+.--..+|..+. -+.++-.+|+|..|..+|+-
T Consensus 41 ~~y~~f~~~~~~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g-~~~~~I~~vvD~np~K~G~~ 108 (160)
T PF08484_consen 41 EYYENFAKRVEQSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFG-LDNDLIDYVVDDNPLKQGKY 108 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT---TTTS--EEES-GGGTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhC-CCcceeEEEEeCChhhcCcc
Confidence 445556666666667777666666678999999999887777777765 44455678899999999943
No 116
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=64.55 E-value=33 Score=37.61 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=58.7
Q ss_pred CceEEEEecCCCCcchHHHHHHHHhCCCceEEE----cch-HHHHHhh--cCCEEEEcceeEe-eCCC----------cc
Q 045642 224 RSFEVFIADGAPKFEGHILAKELDKKGLKAIVI----TDS-AVFAMIS--RVNMVIVGVHAVM-ANGG----------VI 285 (406)
Q Consensus 224 ~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I----~Ds-av~~~m~--~vd~VllGAdav~-~nG~----------vv 285 (406)
...+|.|+- .-++=|..+++.|.+.|+++++. +|. ++...+. +.|.||=-|-..- .+-. -+
T Consensus 379 ~~mkiLVtG-a~G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~ 457 (668)
T PLN02260 379 PSLKFLIYG-RTGWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRA 457 (668)
T ss_pred CCceEEEEC-CCchHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHH
Confidence 445666664 34677899999999999888532 332 3445555 5788776553211 0111 36
Q ss_pred cccchHHHHHHHhhCCCceEEecCCc
Q 045642 286 APAGLHVLALAAKKHDVPFVVVASTH 311 (406)
Q Consensus 286 nk~GT~~lAl~Ak~~~vPv~V~aes~ 311 (406)
|..||..++-+|+.+++++++++..+
T Consensus 458 N~~gt~~l~~a~~~~g~~~v~~Ss~~ 483 (668)
T PLN02260 458 NVVGTLTLADVCRENGLLMMNFATGC 483 (668)
T ss_pred HhHHHHHHHHHHHHcCCeEEEEcccc
Confidence 88999999999999999988875443
No 117
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=64.31 E-value=1.2e+02 Score=30.67 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=53.7
Q ss_pred cCcEEEeccChHHHHHHHHHHHH--cCCceEEEEecCCCCcchH-HHHHHHHhCCCceEEEcch--------HHHHHhhc
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKE--KKRSFEVFIADGAPKFEGH-ILAKELDKKGLKAIVITDS--------AVFAMISR 267 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~--~~~~f~ViV~EsrP~~eG~-~~a~~L~~~GI~vt~I~Ds--------av~~~m~~ 267 (406)
...+++|-|.+..+..++..... .++.-+|++.. +.+... ...+.+...|+++.+++.. .+...+..
T Consensus 64 ~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~ 141 (402)
T TIGR02006 64 SREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSK--TEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRD 141 (402)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECC--CccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 44677777766666655544421 12334566553 444442 3445566779998888532 12223322
Q ss_pred CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 268 VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 268 vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
-+++++-.. +....|.+..+ ..++-+|+.++++|+|
T Consensus 142 ~~~lv~v~~-~~n~tG~~~~~--~~I~~l~~~~g~~liv 177 (402)
T TIGR02006 142 DTILVSIMH-VNNEIGVIQDI--AAIGEICRERKVFFHV 177 (402)
T ss_pred CCEEEEEEC-CCcCceecccH--HHHHHHHHHcCCEEEE
Confidence 223333222 22222333332 3588889999988876
No 118
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=64.29 E-value=76 Score=32.41 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=51.1
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch--HHHHHHHHhCCCceEEEcchHHHHH---hhcCCEEEEcc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG--HILAKELDKKGLKAIVITDSAVFAM---ISRVNMVIVGV 275 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG--~~~a~~L~~~GI~vt~I~Dsav~~~---m~~vd~VllGA 275 (406)
..|++-|.+..+...+......|. +|++. .|.+.+ ..+...+...|+.+..+.-.....+ +..-+++|+=.
T Consensus 76 ~av~~~sG~~Ai~~~l~al~~~Gd--~Vi~~--~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le 151 (391)
T TIGR01328 76 AAVATSSGMGAIAATLLTILKAGD--HLISD--ECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFE 151 (391)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEe--cCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEE
Confidence 456666666555555555443343 45553 355544 2444556678998888754322222 22222333311
Q ss_pred eeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 276 HAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 276 dav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
.-.-..|.+.. --.++-+|+.++++++|
T Consensus 152 ~p~Np~G~v~d---l~~I~~la~~~gi~liv 179 (391)
T TIGR01328 152 TPANPTMKLID---MERVCRDAHSQGVKVIV 179 (391)
T ss_pred CCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 11112333332 23467778999999886
No 119
>PRK05839 hypothetical protein; Provisional
Probab=64.29 E-value=92 Score=31.30 Aligned_cols=105 Identities=19% Similarity=0.109 Sum_probs=54.1
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHH-HHHhhcCCEEEEcc
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAV-FAMISRVNMVIVGV 275 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav-~~~m~~vd~VllGA 275 (406)
+....+++|.|.+..+..++......+.. ..++++ .|.+.+...+ +...|+++..++...- ++.+.--+..+-++
T Consensus 81 ~~~~~I~it~G~~~al~~~~~~~~~~~~g-d~vlv~-~P~y~~~~~~--~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~ 156 (374)
T PRK05839 81 LKENELIPTFGTREVLFNFPQFVLFDKQN-PTIAYP-NPFYQIYEGA--AIASRAKVLLMPLTKENDFTPSLNEKELQEV 156 (374)
T ss_pred CCcceEEEecCcHHHHHHHHHHHhcCCCC-CEEEEC-CCCchhhHHH--HHhcCCEEEEeecccccCCcCCcchhhhccc
Confidence 45566788888776665554443211122 234444 4777664333 3467888877754311 11110000001123
Q ss_pred eeEeeCCCcccccch-------HHHHHHHhhCCCceEE
Q 045642 276 HAVMANGGVIAPAGL-------HVLALAAKKHDVPFVV 306 (406)
Q Consensus 276 dav~~nG~vvnk~GT-------~~lAl~Ak~~~vPv~V 306 (406)
..|+-+ .--|++|+ ..++-.|+.+++++++
T Consensus 157 k~v~i~-nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 157 DLVILN-SPNNPTGRTLSLEELIEWVKLALKHDFILIN 193 (374)
T ss_pred cEEEEe-CCCCCcCcccCHHHHHHHHHHHHHcCCEEEe
Confidence 344433 44566666 4566678899998885
No 120
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=63.36 E-value=1.7e+02 Score=31.01 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCceEEEEecCCCCcch---HHHHHHHHhC--CCceEEE--cchHHHHHhh---cCCEEEEcceeEeeC
Q 045642 212 VKEFLCAAKEKKRSFEVFIADGAPKFEG---HILAKELDKK--GLKAIVI--TDSAVFAMIS---RVNMVIVGVHAVMAN 281 (406)
Q Consensus 212 V~~~L~~A~~~~~~f~ViV~EsrP~~eG---~~~a~~L~~~--GI~vt~I--~Dsav~~~m~---~vd~VllGAdav~~n 281 (406)
+...+.-+..+..+--+|+-.|.-++-- ..+|+.|.+. |++|.+. .+.....++. ++|.|++|+-+. |
T Consensus 239 l~~Y~~~~~~~~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vilGspT~--~ 316 (479)
T PRK05452 239 VELYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGSSTM--N 316 (479)
T ss_pred HHHHHHHhhccCcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEEECCcc--C
Confidence 4444444543222223555566654322 3445566655 6766554 4555566654 699999999886 5
Q ss_pred CCcccccchHHHHHHHhhCCCceEEecCCccc
Q 045642 282 GGVIAPAGLHVLALAAKKHDVPFVVVASTHEL 313 (406)
Q Consensus 282 G~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~ 313 (406)
|+..-.+-...-.+......-....+.+||..
T Consensus 317 ~~~~p~~~~fl~~l~~~~l~gK~~~vFGSygw 348 (479)
T PRK05452 317 NVMMPKIAGLLEEITGLRFRNKRASAFGSHGW 348 (479)
T ss_pred CcchHHHHHHHHHhhccCcCCCEEEEEECCCc
Confidence 66666555544444444433334555566654
No 121
>PLN02778 3,5-epimerase/4-reductase
Probab=62.11 E-value=39 Score=33.00 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=46.6
Q ss_pred EEEEecCCCCcchHHHHHHHHhCCCceEEE----cc-hHHHHHhh--cCCEEEEcceeEee-CC----------Cccccc
Q 045642 227 EVFIADGAPKFEGHILAKELDKKGLKAIVI----TD-SAVFAMIS--RVNMVIVGVHAVMA-NG----------GVIAPA 288 (406)
Q Consensus 227 ~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I----~D-sav~~~m~--~vd~VllGAdav~~-nG----------~vvnk~ 288 (406)
+|.|+-+. ++=|..+++.|.+.|.+|++. .| ..+...+. ++|.||=-|--.-. +- --+|..
T Consensus 11 kiLVtG~t-GfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~ 89 (298)
T PLN02778 11 KFLIYGKT-GWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVV 89 (298)
T ss_pred eEEEECCC-CHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEECCcccCCCCchhhhhCHHHHHHHHHH
Confidence 44444322 445566666666666665532 12 12333333 46777654422110 10 015788
Q ss_pred chHHHHHHHhhCCCceEEecCC
Q 045642 289 GLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 289 GT~~lAl~Ak~~~vPv~V~aes 310 (406)
||..++-+|+++++++++++.+
T Consensus 90 gt~~ll~aa~~~gv~~v~~sS~ 111 (298)
T PLN02778 90 GTLTLADVCRERGLVLTNYATG 111 (298)
T ss_pred HHHHHHHHHHHhCCCEEEEecc
Confidence 9999999999999998777533
No 122
>PRK12320 hypothetical protein; Provisional
Probab=62.07 E-value=27 Score=38.84 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=59.7
Q ss_pred EEEeccChHHHHHHHHH-HHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEE--EcchHHHHHhhcCCEEEEcceeE
Q 045642 202 VILTLGHSKFVKEFLCA-AKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIV--ITDSAVFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~-A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~--I~Dsav~~~m~~vd~VllGAdav 278 (406)
.||+.|.+..+=.-|.. +.++ ..+|+++...+.. +...+++... +.|..+...+.++|.|+--|...
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~--G~~Vi~ldr~~~~--------~~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~ 71 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAA--GHTVSGIAQHPHD--------ALDPRVDYVCASLRNPVLQELAGEADAVIHLAPVD 71 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhC--CCEEEEEeCChhh--------cccCCceEEEccCCCHHHHHHhcCCCEEEEcCccC
Confidence 47788877666655544 3333 3678877754431 1112322211 23444455567788888766432
Q ss_pred eeCCCcccccchHHHHHHHhhCCCceEEecCC
Q 045642 279 MANGGVIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 279 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
..+..-+|..|+..++-+|+..+++++.++..
T Consensus 72 ~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 72 TSAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred ccchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 22223367899999999999999998877654
No 123
>PLN02214 cinnamoyl-CoA reductase
Probab=62.04 E-value=53 Score=32.61 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=58.9
Q ss_pred cCcEEEeccChHHHHHHHHHH-HHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc----hHHHHHhhcCCEEE
Q 045642 199 QNEVILTLGHSKFVKEFLCAA-KEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD----SAVFAMISRVNMVI 272 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A-~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D----sav~~~m~~vd~Vl 272 (406)
.+.+||+.|.++.+=..|..+ .++| .+|+++...+..........+...+-.++++ .| ..+..+++.+|.||
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERG--YTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 456788888877776666544 3334 5666654332211111122333211124433 23 34556677888887
Q ss_pred EcceeEeeCC---CcccccchHHHHHHHhhCCCceEEec
Q 045642 273 VGVHAVMANG---GVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 273 lGAdav~~nG---~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
--|-....+- --.|..||..+.-+|+.+++.-+|..
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 7664322110 01356799999999999887644443
No 124
>PRK06234 methionine gamma-lyase; Provisional
Probab=61.89 E-value=1.1e+02 Score=31.44 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=52.5
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-H-HHHHHHHhCCCceEEEcch---HHHHHhh-cCCEEEEc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-H-ILAKELDKKGLKAIVITDS---AVFAMIS-RVNMVIVG 274 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~-~~a~~L~~~GI~vt~I~Ds---av~~~m~-~vd~VllG 274 (406)
+.++|-|.+..+...|....+.|. +|++.. |.+.+ . .+...+...|+++.++.-. .+...+. +...|++.
T Consensus 81 ~~l~~~sG~~Ai~~al~~ll~~Gd--~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~ie 156 (400)
T PRK06234 81 AAVVAASGMGAISSSLWSALKAGD--HVVASD--TLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLE 156 (400)
T ss_pred cEEEEcCHHHHHHHHHHHHhCCCC--EEEEec--CccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEE
Confidence 567776666666666655554443 555544 65554 2 3345667789999988532 2333332 33333321
Q ss_pred ceeEeeCCCcccccch----HHHHHHHhhC--CCceEE
Q 045642 275 VHAVMANGGVIAPAGL----HVLALAAKKH--DVPFVV 306 (406)
Q Consensus 275 Adav~~nG~vvnk~GT----~~lAl~Ak~~--~vPv~V 306 (406)
...|..|. -.++-+|+.+ +++|+|
T Consensus 157 --------sP~NPtG~v~dl~~I~~la~~~~~~i~liv 186 (400)
T PRK06234 157 --------TPANPTLKVTDIKAISNIAHENNKECLVFV 186 (400)
T ss_pred --------CCCCCCCCcCCHHHHHHHHHhcCCCCEEEE
Confidence 23344443 3677778886 666654
No 125
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=61.80 E-value=87 Score=30.36 Aligned_cols=90 Identities=16% Similarity=0.278 Sum_probs=48.9
Q ss_pred cEEEeccChHH---HHHHHHHHHHcCCceEEEEe--cCCCCcchHHHHHHHHhCCCceEEEcc-hHHHHHhhcCCEEEEc
Q 045642 201 EVILTLGHSKF---VKEFLCAAKEKKRSFEVFIA--DGAPKFEGHILAKELDKKGLKAIVITD-SAVFAMISRVNMVIVG 274 (406)
Q Consensus 201 ~~ILT~g~S~t---V~~~L~~A~~~~~~f~ViV~--EsrP~~eG~~~a~~L~~~GI~vt~I~D-sav~~~m~~vd~VllG 274 (406)
.+++|+|.|.. ...+++...+..+.+++.|+ .+.|..+ .+.+..... -++.+... .-+..+|..+|.+|..
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~--~l~~~~~~~-~~i~~~~~~~~m~~lm~~aDl~Is~ 248 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNPNLD--ELKKFAKEY-PNIILFIDVENMAELMNEADLAIGA 248 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCcCHH--HHHHHHHhC-CCEEEEeCHHHHHHHHHHCCEEEEC
Confidence 45777775443 34555554433344444443 3334432 222222222 24555555 3588999999998874
Q ss_pred ceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 275 VHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 275 Adav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
.| . ...=+-..|+|++++.
T Consensus 249 -------------~G-~-T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 249 -------------AG-S-TSWERCCLGLPSLAIC 267 (279)
T ss_pred -------------Cc-h-HHHHHHHcCCCEEEEE
Confidence 23 1 1233445789999875
No 126
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=61.70 E-value=1e+02 Score=30.91 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcc---cCcEEEecc-ChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCce
Q 045642 178 LIEDINTCREGIAEQAMELIH---QNEVILTLG-HSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKA 253 (406)
Q Consensus 178 ~~~e~~~~~~~I~~~a~~~I~---~g~~ILT~g-~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~v 253 (406)
|.+.++.+++.++ ++++ +..+|+|-| .+..++.++.....++++..+++. .|. |...++...+.|+++
T Consensus 42 ~~~~~~~~r~~l~----~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~--g~~--~~~~~~~a~~~g~~~ 113 (355)
T cd00611 42 FEAIVNEAESDLR----ELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT--GAW--SAKAAKEAKRYGGVV 113 (355)
T ss_pred HHHHHHHHHHHHH----HHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC--CHH--HHHHHHHHHhcCCCc
Confidence 3344445555554 4554 345888877 666666666665433334333333 444 344455556779988
Q ss_pred EEEc-chH------HH---HHh-hcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 254 IVIT-DSA------VF---AMI-SRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 254 t~I~-Dsa------v~---~~m-~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
.++. |.. .. ... ++. ++|.-++.-...|..+. .+++.++++|+|
T Consensus 114 ~~~~~~~~g~~~~~~~~~~~~~~~~~-~lV~~~h~~t~tG~~~~--------~i~~~~g~~~~V 168 (355)
T cd00611 114 VIVAAKEEGKYTKIPDVETWDLAPDA-AYVHYCSNETIHGVEFD--------EVPDTGGVPLVA 168 (355)
T ss_pred EEEecccccCCCCCCCHhhcCCCCCC-CEEEEeCCcccccEEcc--------eecccCCCeEEE
Confidence 8775 311 11 112 234 44455555555555433 334558887776
No 127
>PRK05939 hypothetical protein; Provisional
Probab=61.58 E-value=1.3e+02 Score=30.98 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=54.0
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-HHHHHHHHhCCCceEEEcch---HHHHHhh-cCCEEEEcc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-HILAKELDKKGLKAIVITDS---AVFAMIS-RVNMVIVGV 275 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~~~a~~L~~~GI~vt~I~Ds---av~~~m~-~vd~VllGA 275 (406)
..|++-+....+..+|....+.|. +|++.+ +.+.+ ..+...+...|+.++++.-. ++...+. +...|++
T Consensus 64 ~~v~~ssG~~Ai~~~l~all~~Gd--~Vv~~~--~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~v-- 137 (397)
T PRK05939 64 GTVCFATGMAAIAAVFLTLLRAGD--HLVSSQ--FLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFV-- 137 (397)
T ss_pred eEEEeCCHHHHHHHHHHHHcCCCC--EEEECC--CccccHHHHHHHHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEE--
Confidence 456665556666666655554443 566644 44433 34445678899999888532 3333343 3333333
Q ss_pred eeEeeCCCcccccchH----HHHHHHhhCCCceEE
Q 045642 276 HAVMANGGVIAPAGLH----VLALAAKKHDVPFVV 306 (406)
Q Consensus 276 dav~~nG~vvnk~GT~----~lAl~Ak~~~vPv~V 306 (406)
+ ..-|..|.. .++-+||.++++++|
T Consensus 138 -----e-sp~NptG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 138 -----E-TIANPGTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred -----E-CCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence 2 344455533 466788999988876
No 128
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=61.48 E-value=1e+02 Score=30.68 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=53.8
Q ss_pred cccCcEEEeccChHHHHHHHHHH-HHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAA-KEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A-~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
+...++++|.|.+..+..++... ...| =+|++ + .|.+.+...+- ...|+++..+.+- .. +.. -..
T Consensus 84 ~~~~~I~it~G~~~~i~~~~~~l~~~~g--d~Vl~-~-~p~y~~~~~~~--~~~g~~~~~~~~~--~~-l~~-----~~~ 149 (364)
T PRK07865 84 LDPAAVLPVIGSKELVAWLPTLLGLGPG--DVVVI-P-ELAYPTYEVGA--RLAGATVVRADSL--TE-LGP-----QRP 149 (364)
T ss_pred CCcccEEEccChHHHHHHHHHHHcCCCC--CEEEE-C-CCCcccHHHHH--HhcCCEEEecCCh--hh-CCc-----ccc
Confidence 44567888888887766544444 2233 23444 3 47766643332 3468888777541 11 111 123
Q ss_pred eeEeeCCCcccccchH-------HHHHHHhhCCCceEE
Q 045642 276 HAVMANGGVIAPAGLH-------VLALAAKKHDVPFVV 306 (406)
Q Consensus 276 dav~~nG~vvnk~GT~-------~lAl~Ak~~~vPv~V 306 (406)
..|+-+ ..-|..|.. .++-+|+++++++++
T Consensus 150 ~~v~~~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 186 (364)
T PRK07865 150 ALIWLN-SPSNPTGRVLGVDHLRKVVAWARERGAVVAS 186 (364)
T ss_pred eEEEEc-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 344444 455788843 566778889987764
No 129
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=61.33 E-value=84 Score=32.61 Aligned_cols=97 Identities=23% Similarity=0.365 Sum_probs=53.8
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-H-HHHHHHHhCCCceEEEc--c-hHHHHHh-hcCCEEEEc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-H-ILAKELDKKGLKAIVIT--D-SAVFAMI-SRVNMVIVG 274 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~-~~a~~L~~~GI~vt~I~--D-sav~~~m-~~vd~VllG 274 (406)
..+++-+.+..+..+|....+.|. +|++.. |.+.| . .++..+...|+++.++. | ..+...+ ++...|++
T Consensus 75 ~~l~~ssG~~Ai~~al~al~~~Gd--~Vl~~~--~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~l- 149 (425)
T PRK06084 75 GALAVASGMAAITYAIQTIAEAGD--NIVSVA--KLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFC- 149 (425)
T ss_pred ceeEehhHHHHHHHHHHHHhCCCC--EEEEeC--CCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEE-
Confidence 456666666666666665554443 455543 45554 2 33444555788888774 2 2344444 34444554
Q ss_pred ceeE-eeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 275 VHAV-MANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 275 Adav-~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+.+ -..|.+.. -..++-+|+.++++|+|
T Consensus 150 -esp~NPtG~v~d---l~~I~~la~~~~i~vVv 178 (425)
T PRK06084 150 -ESIGNPAGNIID---IQALADAAHRHGVPLIV 178 (425)
T ss_pred -eCCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 222 22333333 25677789999988876
No 130
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=61.00 E-value=86 Score=32.17 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=52.5
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-HHHH-HHHHhCCCceEEEcch---HHHHHh-hcCCEEEE
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-HILA-KELDKKGLKAIVITDS---AVFAMI-SRVNMVIV 273 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~~~a-~~L~~~GI~vt~I~Ds---av~~~m-~~vd~Vll 273 (406)
..+++|.|.+..+..++....+.| -+|++. .|.+.| ..+. ..+...|+.++++... .+...+ ++...|++
T Consensus 69 e~ivvt~gg~~Ai~~~l~all~~G--d~Il~~--~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~l 144 (388)
T PRK08861 69 KGAVVTNCGTSALNLWVSALLGPD--DLIVAP--HDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILL 144 (388)
T ss_pred CeEEEECCHHHHHHHHHHHHcCCC--CEEEEc--CCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEE
Confidence 345666666666666665554333 344443 576766 3433 3345578998887522 233333 23444444
Q ss_pred cceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 274 GVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 274 GAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
. .---+.|.++. -..++-+|+.++++|+|
T Consensus 145 e-sP~NPtG~v~d---l~~I~~la~~~gi~vIv 173 (388)
T PRK08861 145 E-TPSNPLVRVVD---IAELCQKAKAVGALVAV 173 (388)
T ss_pred E-CCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 3 11122233333 12577788899987765
No 131
>PRK15482 transcriptional regulator MurR; Provisional
Probab=60.88 E-value=1.2e+02 Score=29.30 Aligned_cols=86 Identities=22% Similarity=0.133 Sum_probs=55.3
Q ss_pred HHHHHHhcccCcEEEec--cChHHHHHHHHHHHH-cCCce-------------------EEEEecCCCC--cchHHHHHH
Q 045642 190 AEQAMELIHQNEVILTL--GHSKFVKEFLCAAKE-KKRSF-------------------EVFIADGAPK--FEGHILAKE 245 (406)
Q Consensus 190 ~~~a~~~I~~g~~ILT~--g~S~tV~~~L~~A~~-~~~~f-------------------~ViV~EsrP~--~eG~~~a~~ 245 (406)
.+.++++|.+-..|..+ |.|..+...|..-.. -|++. .|+++=|.++ .+-..+++.
T Consensus 125 l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t~~~~~~~~~ 204 (285)
T PRK15482 125 LQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEA 204 (285)
T ss_pred HHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 34566667666666664 557666665544331 22211 2333333333 233678889
Q ss_pred HHhCCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 246 LDKKGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 246 L~~~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
+.+.|+++..|+|.....+-+.+|.+|.-.
T Consensus 205 a~~~g~~iI~IT~~~~s~la~~ad~~l~~~ 234 (285)
T PRK15482 205 ARKQGATVIAITSLADSPLRRLAHFTLDTV 234 (285)
T ss_pred HHHCCCEEEEEeCCCCCchHHhCCEEEEcC
Confidence 999999999999999888888899988743
No 132
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=60.79 E-value=1.3e+02 Score=28.91 Aligned_cols=38 Identities=18% Similarity=0.098 Sum_probs=30.0
Q ss_pred CcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEc
Q 045642 236 KFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVG 274 (406)
Q Consensus 236 ~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllG 274 (406)
..+-...++..++.|+++..|++ .-..+.+.+|.++.-
T Consensus 188 t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 188 TKSLVELAQLARENGATVIAITS-AGSPLAREATLALTL 225 (284)
T ss_pred CHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEec
Confidence 34446789999999999999997 456677778998863
No 133
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=60.78 E-value=91 Score=25.43 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=36.5
Q ss_pred HHHHHhCCCceEEEcchHH----HHHhh--cCCEEEEcceeEeeCCCccc-ccchHHHHHHHhhCCCceEEe
Q 045642 243 AKELDKKGLKAIVITDSAV----FAMIS--RVNMVIVGVHAVMANGGVIA-PAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 243 a~~L~~~GI~vt~I~Dsav----~~~m~--~vd~VllGAdav~~nG~vvn-k~GT~~lAl~Ak~~~vPv~V~ 307 (406)
.+.+.+.|+++..+.+... ..+.. ++|.+++|++. .|.+-. -.|+..--++-+.-++||.|+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~---~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 55 LRLAEELGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKSR---RSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHHHHcCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCC---CchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 3445567888766655333 22222 48999999985 333333 345544444444458999886
No 134
>PRK08064 cystathionine beta-lyase; Provisional
Probab=60.65 E-value=1e+02 Score=31.41 Aligned_cols=93 Identities=14% Similarity=0.109 Sum_probs=52.2
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch--HHHHHHHHhCCCceEEEcch---HHHHHhh-cCCEEEEc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG--HILAKELDKKGLKAIVITDS---AVFAMIS-RVNMVIVG 274 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG--~~~a~~L~~~GI~vt~I~Ds---av~~~m~-~vd~VllG 274 (406)
..|++-+.+..+...|. +.+.|. +|++. .|.+.| ..+.+.+...|+.+..+... .+...+. +...|++
T Consensus 71 ~~v~~~sG~~ai~~~l~-~l~~Gd--~Vlv~--~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l- 144 (390)
T PRK08064 71 KGFAFASGMAAISTAFL-LLSKGD--HVLIS--EDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYV- 144 (390)
T ss_pred CeEEECCHHHHHHHHHH-HhCCCC--EEEEc--cCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEE-
Confidence 45666555666665664 443443 45554 466655 34445667789999988642 2333332 3333333
Q ss_pred ceeEeeCCCcccccch----HHHHHHHhhCCCceEE
Q 045642 275 VHAVMANGGVIAPAGL----HVLALAAKKHDVPFVV 306 (406)
Q Consensus 275 Adav~~nG~vvnk~GT----~~lAl~Ak~~~vPv~V 306 (406)
. ..-|..|. ..++-+|+.++++|+|
T Consensus 145 ~-------~p~NptG~~~dl~~I~~la~~~g~~vvv 173 (390)
T PRK08064 145 E-------TPSNPLLKVTDIRGVVKLAKAIGCLTFV 173 (390)
T ss_pred E-------CCCCCCcEeccHHHHHHHHHHcCCEEEE
Confidence 2 23333343 3567788999987776
No 135
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=60.41 E-value=1.3e+02 Score=26.90 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=30.9
Q ss_pred cchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 237 FEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 237 ~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
.+-...++.+++.|+++..|++..-..+-+.+|.+|.-.
T Consensus 115 ~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 115 PNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 344688999999999999999987777777788877643
No 136
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=60.35 E-value=1.7e+02 Score=29.44 Aligned_cols=140 Identities=19% Similarity=0.227 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcc--cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCc
Q 045642 165 KKLKSELIKAVNELIED-----INTCREGIAEQAMELIH--QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKF 237 (406)
Q Consensus 165 ~~~k~~l~~~i~~~~~e-----~~~~~~~I~~~a~~~I~--~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~ 237 (406)
+++++.+.+.++..-.- .......+.+..+++.. ...+++|.|.+..+...++.+..-..+-+|++.+ |.+
T Consensus 55 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~--~~y 132 (413)
T cd00610 55 PEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFE--GAY 132 (413)
T ss_pred HHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEEC--CCc
Confidence 45556666655432110 01123344444455554 4567888888888888888775322234566665 445
Q ss_pred chH-HHHHHHHh----------CCCceEEEcch--------------HHHHHhhc--CCEEEEcceeEeeCCCcc-cccc
Q 045642 238 EGH-ILAKELDK----------KGLKAIVITDS--------------AVFAMISR--VNMVIVGVHAVMANGGVI-APAG 289 (406)
Q Consensus 238 eG~-~~a~~L~~----------~GI~vt~I~Ds--------------av~~~m~~--vd~VllGAdav~~nG~vv-nk~G 289 (406)
.|. ..+..+.. .+.++..++-. .+...+.+ -+..++=.+-+...+|.+ ...+
T Consensus 133 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~ 212 (413)
T cd00610 133 HGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPG 212 (413)
T ss_pred CCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHH
Confidence 553 22222221 12345555433 22333433 122222234466664443 3333
Q ss_pred -hHHHHHHHhhCCCceEE
Q 045642 290 -LHVLALAAKKHDVPFVV 306 (406)
Q Consensus 290 -T~~lAl~Ak~~~vPv~V 306 (406)
-..++-+|++|++++++
T Consensus 213 ~l~~l~~l~~~~~~~li~ 230 (413)
T cd00610 213 YLKALRELCRKHGILLIA 230 (413)
T ss_pred HHHHHHHHHHHcCCEEEE
Confidence 45667789999998875
No 137
>PRK05764 aspartate aminotransferase; Provisional
Probab=59.75 E-value=1e+02 Score=30.96 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=52.6
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc----------hHHHHHhh
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD----------SAVFAMIS 266 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D----------sav~~~m~ 266 (406)
+..+.+++|.|.+..+..++....+.|. +|++ + .|.+.+.. ..+...|+++..++- ..+...+.
T Consensus 89 ~~~~~i~~~~g~~~a~~~~~~~~~~~gd--~vl~-~-~p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 162 (393)
T PRK05764 89 YDPSQVIVTTGAKQALYNAFMALLDPGD--EVII-P-APYWVSYP--EMVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT 162 (393)
T ss_pred CCHHHEEEeCCcHHHHHHHHHHhcCCCC--EEEe-c-CCCCcchH--HHHHHcCCEEEEEecCcccCCcCCHHHHHHhhC
Confidence 3445678888877777666666653342 3433 3 36665532 223456888776642 12222222
Q ss_pred -cCCEEEEcceeEeeCCCcccccchH-------HHHHHHhhCCCceEE
Q 045642 267 -RVNMVIVGVHAVMANGGVIAPAGLH-------VLALAAKKHDVPFVV 306 (406)
Q Consensus 267 -~vd~VllGAdav~~nG~vvnk~GT~-------~lAl~Ak~~~vPv~V 306 (406)
++..|++- ..-|..|.. .++-.|+.|++++++
T Consensus 163 ~~~~~v~~~--------~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 163 PKTKALILN--------SPSNPTGAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred ccceEEEEE--------CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 23233221 134556654 466778899988876
No 138
>PRK09028 cystathionine beta-lyase; Provisional
Probab=59.72 E-value=1.1e+02 Score=31.56 Aligned_cols=94 Identities=13% Similarity=0.139 Sum_probs=55.6
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-HHHH-HHHHhCCCceEEEcc---hHHHHHhh-cCCEEEEc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-HILA-KELDKKGLKAIVITD---SAVFAMIS-RVNMVIVG 274 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~~~a-~~L~~~GI~vt~I~D---sav~~~m~-~vd~VllG 274 (406)
++++|-|.+..+..++....+.|. +|++. .|.+.| ..++ ..|...|+++.++.- ..+...+. +...|++-
T Consensus 78 ~~~~~~sG~~Ai~~~l~all~~GD--~Vvv~--~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~le 153 (394)
T PRK09028 78 GTALYPSGAAAISNALLSFLKAGD--HLLMV--DSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLE 153 (394)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEE--CCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 567777766666666665554443 56666 445555 3333 456778999988742 33444443 34333332
Q ss_pred ceeEeeCCCcccccch----HHHHHHHhhCCCceEE
Q 045642 275 VHAVMANGGVIAPAGL----HVLALAAKKHDVPFVV 306 (406)
Q Consensus 275 Adav~~nG~vvnk~GT----~~lAl~Ak~~~vPv~V 306 (406)
+.-|..|. ..++-.||.++++++|
T Consensus 154 --------spsNPtg~v~dl~~I~~la~~~g~~lvv 181 (394)
T PRK09028 154 --------SPGSITMEVQDVPTLSRIAHEHDIVVML 181 (394)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 23355553 4567778899987775
No 139
>PRK05443 polyphosphate kinase; Provisional
Probab=59.61 E-value=25 Score=39.06 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=40.8
Q ss_pred ccChHHHHHHHHHHHHcCCceEEEEecCCCCcc--hHHHHHHHHhCCCceEEEcc
Q 045642 206 LGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFE--GHILAKELDKKGLKAIVITD 258 (406)
Q Consensus 206 ~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~e--G~~~a~~L~~~GI~vt~I~D 258 (406)
.+..+.+.+.|..|+++|+..+|+|--..+..+ ....++.|.++|+.|.|-..
T Consensus 376 ~~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~~~ 430 (691)
T PRK05443 376 TSKDSPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYGVV 430 (691)
T ss_pred ecCCHHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEccC
Confidence 566677788888888899998888766655444 36789999999999977433
No 140
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=59.26 E-value=98 Score=25.33 Aligned_cols=91 Identities=20% Similarity=0.290 Sum_probs=55.7
Q ss_pred cEEEeccChH--HHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc-----hHHHHHhh--cCCEE
Q 045642 201 EVILTLGHSK--FVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD-----SAVFAMIS--RVNMV 271 (406)
Q Consensus 201 ~~ILT~g~S~--tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D-----sav~~~m~--~vd~V 271 (406)
.++++.+.+. -...+.+... ...|+++.+++ +++.|.+.|++|+.+.- ..+..+++ ++|.|
T Consensus 2 ~vl~s~~~~~k~~~~~~~~~l~--~~G~~l~aT~g--------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~v 71 (110)
T cd01424 2 TVFISVADRDKPEAVEIAKRLA--ELGFKLVATEG--------TAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLV 71 (110)
T ss_pred eEEEEEEcCcHhHHHHHHHHHH--HCCCEEEEchH--------HHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEE
Confidence 3556555433 2223333333 24688887642 68889999999877622 33444443 58888
Q ss_pred EEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 272 IVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 272 llGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
|--.+ +.- .....+.+=.+|-.++||++--
T Consensus 72 In~~~-----~~~-~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 72 INTPS-----GKR-AIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred EECCC-----CCc-cCccHHHHHHHHHHhCCCEEec
Confidence 87542 221 2334578888999999999843
No 141
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=59.08 E-value=1.1e+02 Score=31.24 Aligned_cols=96 Identities=18% Similarity=0.271 Sum_probs=53.5
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc----------hHHHHHhh
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD----------SAVFAMIS 266 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D----------sav~~~m~ 266 (406)
+....+++|.|.+..+..++......| -+|++. .|.+.+.. ..+...|+++..++- ..+...+.
T Consensus 102 ~~~~~i~it~G~~~al~~~~~~~~~~g--d~vlv~--~P~y~~~~--~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 175 (412)
T PTZ00433 102 IKKDNVVLCSGVSHAILMALTALCDEG--DNILVP--APGFPHYE--TVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD 175 (412)
T ss_pred CChhhEEEeCChHHHHHHHHHHhcCCC--CEEEEc--cCCcccHH--HHHHHcCCEEEEEecCccccCcCCHHHHHHHhc
Confidence 455678888888877766666554333 244444 46666532 235567888777642 11222222
Q ss_pred -cCCEEEEcceeEeeCCCcccccch-------HHHHHHHhhCCCceEE
Q 045642 267 -RVNMVIVGVHAVMANGGVIAPAGL-------HVLALAAKKHDVPFVV 306 (406)
Q Consensus 267 -~vd~VllGAdav~~nG~vvnk~GT-------~~lAl~Ak~~~vPv~V 306 (406)
++.+|++ + | .-|+.|+ ..++-.|+++++++++
T Consensus 176 ~~~~~i~~-~-----~--p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 176 DRTKALIM-T-----N--PSNPCGSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred cCceEEEE-e-----C--CCCCCCcccCHHHHHHHHHHHHHcCCeEEE
Confidence 3333332 1 2 2366664 4456678888887765
No 142
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=58.94 E-value=70 Score=32.06 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCceEEEcch--------HHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhh----CCCceEEe
Q 045642 240 HILAKELDKKGLKAIVITDS--------AVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKK----HDVPFVVV 307 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Ds--------av~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~----~~vPv~V~ 307 (406)
...|+.|.+.||++++|--. ++....++...|++ +.++....-.|+...+.++.. ...||.-+
T Consensus 217 l~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~-----vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl 291 (327)
T CHL00144 217 LQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVLI-----VEECMKTGGIGAELIAQINEHLFDELDAPIVRL 291 (327)
T ss_pred HHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEEE-----EECCCCCCCHHHHHHHHHHHhchhhcCCCeEEE
Confidence 44455667777777776332 34455556666654 567777888899999998887 46788888
Q ss_pred cCCcccc
Q 045642 308 ASTHELC 314 (406)
Q Consensus 308 aes~K~~ 314 (406)
+-.-.|.
T Consensus 292 ~~~d~~~ 298 (327)
T CHL00144 292 SSQDVPT 298 (327)
T ss_pred ccCCCcC
Confidence 7554443
No 143
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=58.91 E-value=1.2e+02 Score=31.22 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=50.0
Q ss_pred CcEEEeccChH---------HHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCc----------------eE
Q 045642 200 NEVILTLGHSK---------FVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLK----------------AI 254 (406)
Q Consensus 200 g~~ILT~g~S~---------tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~----------------vt 254 (406)
..+|+.++.|+ .+.+.+....++ .++.+++.- .|...-..+.+.+.+.|++ +.
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~-~~~~~v~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 282 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDS-QPFVFLAAI-VPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLE 282 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhC-CCeEEEEEe-CCCCCHHHHHHHHHhcCceecCCccccchhhccCceE
Confidence 34677777776 333333333322 456555543 2222223344555555653 33
Q ss_pred EEcc-hHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 255 VITD-SAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 255 ~I~D-sav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
++.. ..+..+|..+|.||. +.||.+ +=+-.+++|++++=
T Consensus 283 v~~~~~~~~~~l~~ADlvI~-------------rSGt~T--~E~a~lg~P~Ilip 322 (396)
T TIGR03492 283 VLLGRGAFAEILHWADLGIA-------------MAGTAT--EQAVGLGKPVIQLP 322 (396)
T ss_pred EEechHhHHHHHHhCCEEEE-------------CcCHHH--HHHHHhCCCEEEEe
Confidence 3222 245677887776654 367755 44667899999863
No 144
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=58.73 E-value=1.9e+02 Score=29.51 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=62.0
Q ss_pred HHhcccCcEEEeccChHHHHHHHHHHHHcC------CceEEEEecCCCCcchHHH-HHHHHhC--------CC--ceEEE
Q 045642 194 MELIHQNEVILTLGHSKFVKEFLCAAKEKK------RSFEVFIADGAPKFEGHIL-AKELDKK--------GL--KAIVI 256 (406)
Q Consensus 194 ~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~------~~f~ViV~EsrP~~eG~~~-a~~L~~~--------GI--~vt~I 256 (406)
+++...+.+.++.|.|..++..|+.|..-. .+-+|+..+.. +.|..+ +..+... +. .+..+
T Consensus 91 ~~~~~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~--yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (406)
T PRK12381 91 IDATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNA--FHGRTLFTVSAGGQPKYSQDFAPLPPDIRHA 168 (406)
T ss_pred HhhCCCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCC--cCCcchhHHhhcCCcccccCCCCCCCCeeEe
Confidence 333434578888999999999999886421 23456665543 556432 2222210 01 12323
Q ss_pred --cc-hHHHHHhh-cCCEEEEcceeEeeCCCcccc-cc-hHHHHHHHhhCCCceEE
Q 045642 257 --TD-SAVFAMIS-RVNMVIVGVHAVMANGGVIAP-AG-LHVLALAAKKHDVPFVV 306 (406)
Q Consensus 257 --~D-sav~~~m~-~vd~VllGAdav~~nG~vvnk-~G-T~~lAl~Ak~~~vPv~V 306 (406)
+| .++...+. ++-.|++ +-+.++|+++-. .+ -..+.-+|++|++.+++
T Consensus 169 ~~~d~~~l~~~l~~~~aavii--EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~ 222 (406)
T PRK12381 169 AYNDLNSASALIDDQTCAVIV--EPIQGEGGVIPADKAFLQGLRELCDRHNALLIF 222 (406)
T ss_pred CCCCHHHHHHhccCCeeEEEE--eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 23 23333332 4445665 678999987742 33 33456689999998874
No 145
>PRK10342 glycerate kinase I; Provisional
Probab=58.56 E-value=14 Score=37.97 Aligned_cols=50 Identities=22% Similarity=0.117 Sum_probs=35.3
Q ss_pred HHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCcccc
Q 045642 263 AMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELC 314 (406)
Q Consensus 263 ~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~ 314 (406)
..++.+|.||.|==.+-. --..--.-..+|-.|+.++|||+++|.+....
T Consensus 280 ~~l~~ADLVITGEG~~D~--QTl~GK~p~gVa~~A~~~~vPviai~G~~~~~ 329 (381)
T PRK10342 280 EHIHDCTLVITGEGRIDS--QSIHGKVPIGVANVAKKYHKPVIGIAGSLTDD 329 (381)
T ss_pred HHhccCCEEEECCCcCcc--cccCCccHHHHHHHHHHhCCCEEEEecccCCC
Confidence 456789999998544432 22333345667888999999999999986544
No 146
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=58.44 E-value=1e+02 Score=31.33 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=51.6
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-HHHHHHH-HhCCCceEEEcc---hHHHHHhh-cCCEEEE
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-HILAKEL-DKKGLKAIVITD---SAVFAMIS-RVNMVIV 273 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~~~a~~L-~~~GI~vt~I~D---sav~~~m~-~vd~Vll 273 (406)
..+++|-|.+..+..++....+.|. +|++ ..|.+.| ..+...+ ...|+.+.++.. ..+...+. +...|++
T Consensus 67 ~~v~~~~gg~~Ai~~~l~all~~GD--~Vl~--~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l 142 (382)
T TIGR02080 67 AGAVVTNTGMSAIHLVTTALLGPDD--LLVA--PHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLI 142 (382)
T ss_pred CcEEEEcCHHHHHHHHHHHHcCCCC--EEEE--cCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEE
Confidence 3466666666666666655553342 4444 4567766 4444454 445688887632 22333332 3333333
Q ss_pred cceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 274 GVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 274 GAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
. .---..|.+.. -..++-+|+.++++++|
T Consensus 143 ~-~p~NPtG~~~d---l~~I~~la~~~g~~vvv 171 (382)
T TIGR02080 143 E-TPSNPLLRVVD---IAKICHLAKAVGAVVVV 171 (382)
T ss_pred E-CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 2 11122233332 23677778889887665
No 147
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=58.42 E-value=1.5e+02 Score=27.16 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEc
Q 045642 240 HILAKELDKKGLKAIVITDSAVFAMISRVNMVIVG 274 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllG 274 (406)
...++.+.+.|+++..|+-..-..+-+.+|.+|.-
T Consensus 128 i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~ 162 (192)
T PRK00414 128 IKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRV 162 (192)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence 57788888899999999876656666678888753
No 148
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=58.32 E-value=1e+02 Score=25.15 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=36.1
Q ss_pred HHHHhCCCceEEEc--c----hHHHHHhh--cCCEEEEcceeEeeCCCcc-cccchHHHHHHHhhCCCceEEe
Q 045642 244 KELDKKGLKAIVIT--D----SAVFAMIS--RVNMVIVGVHAVMANGGVI-APAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 244 ~~L~~~GI~vt~I~--D----sav~~~m~--~vd~VllGAdav~~nG~vv-nk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
+.+.+.|+++..+. . .++..+.. ++|.|++|... .++.- .-.|+..-. +.++.++||+++
T Consensus 63 ~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~---~~~~~~~~lGs~~~~-v~~~~~~pvlvv 131 (132)
T cd01988 63 RIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHG---STSLRDRLFGGVIDQ-VLESAPCDVAVV 131 (132)
T ss_pred HHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCC---CCCccceecCchHHH-HHhcCCCCEEEe
Confidence 34445788877554 2 23333333 49999999985 22221 235764444 467888999875
No 149
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=58.21 E-value=1.4e+02 Score=29.55 Aligned_cols=106 Identities=13% Similarity=0.235 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch---
Q 045642 183 NTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS--- 259 (406)
Q Consensus 183 ~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds--- 259 (406)
...++.|+++. .+...++++|.|.+..+..++.. ...| .|++. .|.+.... ..+...|.++..++-.
T Consensus 58 ~~lr~~ia~~~--~~~~~~i~it~Ga~~~l~~~~~~-l~~g---~viv~--~P~y~~~~--~~~~~~g~~~~~v~~~~~~ 127 (356)
T PRK08056 58 RHLHQALARHH--QVPASWILAGNGETESIFAVVSG-LKPR---RAMIV--TPGFAEYR--RALQQVGCEIRRYSLREAD 127 (356)
T ss_pred HHHHHHHHHHh--CcChhhEEECCCHHHHHHHHHHH-hCCC---CEEEe--CCCcHHHH--HHHHHcCCeEEEEeccccc
Confidence 44455565542 23445677777766665555554 4333 45544 37665532 2345568877766421
Q ss_pred ------HH-HHHhhcCCEEEEcceeEeeCCCcccccchH-------HHHHHHhhCCCceEE
Q 045642 260 ------AV-FAMISRVNMVIVGVHAVMANGGVIAPAGLH-------VLALAAKKHDVPFVV 306 (406)
Q Consensus 260 ------av-~~~m~~vd~VllGAdav~~nG~vvnk~GT~-------~lAl~Ak~~~vPv~V 306 (406)
.+ ..+-+++.+|++. ..-|.+|.. .++-.|+.+++++++
T Consensus 128 ~~~~~~~~~~~~~~~~k~v~l~--------~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 128 GWQLTDAILEALTPDLDCLFLC--------TPNNPTGLLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred CCCccHHHHHhccCCCCEEEEe--------CCcCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 11 1122345544442 345666643 456677888887765
No 150
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=58.12 E-value=1e+02 Score=31.11 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=67.8
Q ss_pred HHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCC------C----------cch----HHHHHHHH
Q 045642 188 GIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAP------K----------FEG----HILAKELD 247 (406)
Q Consensus 188 ~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP------~----------~eG----~~~a~~L~ 247 (406)
.++..+.+.|.+ ..|+..|....=-.+.+...+.|.. ++.++|... . .+| ..+++.|.
T Consensus 13 ~~G~~~Q~~L~~-~~VlIiG~GglGs~va~~La~aGvg-~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~ 90 (338)
T PRK12475 13 GIGEEGQRKIRE-KHVLIVGAGALGAANAEALVRAGIG-KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLR 90 (338)
T ss_pred hcCHHHHHhhcC-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHH
Confidence 356666677754 5688888776655556665555642 444444332 0 123 23456676
Q ss_pred hC--CCceEEEc----chHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 248 KK--GLKAIVIT----DSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 248 ~~--GI~vt~I~----Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
+. ++.++.+. +..+..+++++|.||.+.|..-. -+.+..+|+.+++|++..+
T Consensus 91 ~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~---------r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 91 KINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDT---------RLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 64 46555543 23455667889999999875432 2567788999999998653
No 151
>PRK04311 selenocysteine synthase; Provisional
Probab=57.74 E-value=1.3e+02 Score=31.86 Aligned_cols=117 Identities=18% Similarity=0.234 Sum_probs=63.0
Q ss_pred HHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCC-CCcch-HHHHHHHHhCCCceEEEcc------h
Q 045642 188 GIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGA-PKFEG-HILAKELDKKGLKAIVITD------S 259 (406)
Q Consensus 188 ~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~Esr-P~~eG-~~~a~~L~~~GI~vt~I~D------s 259 (406)
.+.+..++++...+.++|-+.+..+..+| .+...| -+|++.... +...| ..+.+.+...|+.+..+.- .
T Consensus 131 ~~e~~lA~l~Gae~a~vv~sgtaAl~l~l-~~l~~G--deVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~ 207 (464)
T PRK04311 131 ALAALLCALTGAEDALVVNNNAAAVLLAL-NALAAG--KEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLR 207 (464)
T ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHH-HHhCCC--CEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCHH
Confidence 33444455665556777766666665555 444333 467886542 22122 3344556778988776642 1
Q ss_pred HHHHHhhcCCEEEEccee-Eee-CCCcccccchHHHHHHHhhCCCceEEec
Q 045642 260 AVFAMISRVNMVIVGVHA-VMA-NGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 260 av~~~m~~vd~VllGAda-v~~-nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
.+...+..=++.++-.+. -+. .| .....--..++-+||.|++|++|=+
T Consensus 208 dle~aI~~~TklV~~vh~sN~~i~G-~~~~~dl~eI~~lak~~gi~vivD~ 257 (464)
T PRK04311 208 DYEQAINENTALLLKVHTSNYRIEG-FTKEVSLAELAALGKEHGLPVVYDL 257 (464)
T ss_pred HHHHhcCccCeEEEEEcCCCccccc-cCCcCCHHHHHHHHHHcCCeEEEEC
Confidence 223334332444433322 110 12 1122345668899999999999955
No 152
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=57.63 E-value=1.9e+02 Score=28.13 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=51.7
Q ss_pred HHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc--c-hHHHHHhh
Q 045642 190 AEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT--D-SAVFAMIS 266 (406)
Q Consensus 190 ~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~--D-sav~~~m~ 266 (406)
.+..++++...+.|++.+.+..+..++..+.+.| -+|++. .|.+.....+ +...|+++..++ | ..+-..+.
T Consensus 67 ~~~la~~~~~~~~i~~~~G~~~~~~~l~~~~~~g--d~v~~~--~~~~~~~~~~--~~~~g~~~~~~~~~d~~~l~~~~~ 140 (360)
T TIGR00858 67 EEELAEWKGTEAALLFSSGYLANVGVISALVGKG--DLILSD--ALNHASLIDG--CRLSGARVRRYRHNDVEHLERLLE 140 (360)
T ss_pred HHHHHHHhCCCCEEEECchHHHHHHHHHHhCCCC--CEEEEE--ccccHHHHHH--HHhcCCceEEecCCCHHHHHHHHH
Confidence 3334444444455555555655555555444222 244443 3555443322 344677777664 2 12333343
Q ss_pred cC----CEEEEcceeEeeCCCcccccc----hHHHHHHHhhCCCceEE
Q 045642 267 RV----NMVIVGVHAVMANGGVIAPAG----LHVLALAAKKHDVPFVV 306 (406)
Q Consensus 267 ~v----d~VllGAdav~~nG~vvnk~G----T~~lAl~Ak~~~vPv~V 306 (406)
.. .++++ . +.+.|..| -..++-+|+.+++++++
T Consensus 141 ~~~~~~~~~v~-~------~~~~~~~G~~~~~~~i~~l~~~~~~~li~ 181 (360)
T TIGR00858 141 KNRGERRKLIV-T------DGVFSMDGDIAPLPQLVALAERYGAWLMV 181 (360)
T ss_pred HcccCCCeEEE-E------eCCccCCCCCcCHHHHHHHHHHcCcEEEE
Confidence 21 23333 1 23334444 34567788899987775
No 153
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=57.23 E-value=53 Score=32.81 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=61.0
Q ss_pred HHHHHHHhcc--cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhh
Q 045642 189 IAEQAMELIH--QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMIS 266 (406)
Q Consensus 189 I~~~a~~~I~--~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~ 266 (406)
++.-|++++. +..++..+|.....+.-++.......--+|+|. +|-...-..++.++.+.|+++....|.. .+++
T Consensus 115 ~salaa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~-~r~~~~~~~~~~~~~~~g~~v~~~~~~~--eav~ 191 (325)
T TIGR02371 115 AGGVAAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVY-CRTPSTREKFALRASDYEVPVRAATDPR--EAVE 191 (325)
T ss_pred HHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEE-CCCHHHHHHHHHHHHhhCCcEEEeCCHH--HHhc
Confidence 3444556663 345777788777666555444322222345555 4433334577888888898877765543 4458
Q ss_pred cCCEEEEcc---eeE-----eeCCCcccccchH
Q 045642 267 RVNMVIVGV---HAV-----MANGGVIAPAGLH 291 (406)
Q Consensus 267 ~vd~VllGA---dav-----~~nG~vvnk~GT~ 291 (406)
++|.|+... +-+ +..|..++-+|++
T Consensus 192 ~aDiVitaT~s~~P~~~~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 192 GCDILVTTTPSRKPVVKADWVSEGTHINAIGAD 224 (325)
T ss_pred cCCEEEEecCCCCcEecHHHcCCCCEEEecCCC
Confidence 999999865 333 4567777777764
No 154
>PLN02656 tyrosine transaminase
Probab=57.20 E-value=1.6e+02 Score=29.97 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=52.1
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc----h------HHHHHhh
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD----S------AVFAMIS 266 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D----s------av~~~m~ 266 (406)
+....+++|.|.+..+..++....+.| -+|++. .|.+.+...+..+ .|+.+..++- . .+...+.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vlv~--~p~y~~~~~~~~~--~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 167 (409)
T PLN02656 94 LSLDDVFITSGCTQAIDVALSMLARPG--ANILLP--RPGFPIYELCAAF--RHLEVRYVDLLPEKGWEVDLDAVEALAD 167 (409)
T ss_pred CCcccEEEeCChHHHHHHHHHHHhCCC--CeEEEe--CCCCCcHHHHHHH--cCCEEEEEeCCCcCCCCCCHHHHHHHhc
Confidence 445567888887776666665554333 345554 4666554333333 5777766641 1 1222222
Q ss_pred cCCEEEEcceeEeeCCCcccccchH-------HHHHHHhhCCCceEE
Q 045642 267 RVNMVIVGVHAVMANGGVIAPAGLH-------VLALAAKKHDVPFVV 306 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~vvnk~GT~-------~lAl~Ak~~~vPv~V 306 (406)
.-+++++ +.|- -|.+|+. .++-.|+.+++++++
T Consensus 168 ~~~~~v~-----l~~P--~NPtG~~~s~~~~~~i~~~a~~~~~~ii~ 207 (409)
T PLN02656 168 QNTVALV-----IINP--GNPCGNVYSYQHLKKIAETAEKLKILVIA 207 (409)
T ss_pred cCceEEE-----EECC--CCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2223322 2221 3666654 366778889988775
No 155
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=57.00 E-value=1e+02 Score=25.92 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=27.2
Q ss_pred cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 267 RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
++|++++|++. +...+.| ....-+.++-.+||+|+
T Consensus 103 ~~DLIV~Gs~~-----~~~~~lg-Sva~~v~~~a~~pVLvv 137 (144)
T PRK15118 103 DMDLVVCGHHQ-----DFWSKLM-SSARQLINTVHVDMLIV 137 (144)
T ss_pred CCCEEEEeCcc-----cHHHHHH-HHHHHHHhhCCCCEEEe
Confidence 69999999985 2344578 45557888899999997
No 156
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=56.98 E-value=2e+02 Score=28.06 Aligned_cols=101 Identities=21% Similarity=0.204 Sum_probs=54.1
Q ss_pred CcEEEeccChHHHHHHHHHHHHc------------CCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc-c-------h
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEK------------KRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT-D-------S 259 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~------------~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~-D-------s 259 (406)
...+.|.|.+......+..+... +.+..|++. .|...... +.+...|+++..++ | .
T Consensus 58 ~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~h~~~~--~~~~~~g~~~~~v~~~~~~~~d~~ 133 (345)
T cd06450 58 ADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCS--DQAHVSVE--KAAAYLDVKVRLVPVDEDGRMDPE 133 (345)
T ss_pred CCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEc--CcchhHHH--HHHHHHhcCeEEeeeCCCCCcCHH
Confidence 46788888887777666665421 112333333 33333322 22223377777764 1 1
Q ss_pred HHHHHhhc------CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 260 AVFAMISR------VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 260 av~~~m~~------vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
.+...+.+ -.++++....-...|.+ .. -..++-+|+.+++++++=
T Consensus 134 ~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~-~~--~~~i~~~~~~~~~~l~vD 184 (345)
T cd06450 134 ALEAAIDEDKAEGLNPIMVVATAGTTDTGAI-DP--LEEIADLAEKYDLWLHVD 184 (345)
T ss_pred HHHHHHHHHHHCCCCcEEEEEecccCCCCCC-CC--HHHHHHHHHHhCCeEEEe
Confidence 23333433 34455544444444544 22 356788899999998873
No 157
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=56.69 E-value=1.3e+02 Score=31.23 Aligned_cols=97 Identities=12% Similarity=0.183 Sum_probs=53.9
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH--HHHHHHHhCCCceEEEcc---hHHHHHhh-cCCEEEEc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH--ILAKELDKKGLKAIVITD---SAVFAMIS-RVNMVIVG 274 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~--~~a~~L~~~GI~vt~I~D---sav~~~m~-~vd~VllG 274 (406)
..+++-+.+..+..+|....+.| -+|++.. |.+.|. .+...+...|+.++++.- ..+...+. +...|++
T Consensus 80 ~al~~~SG~~Ai~~al~all~pG--d~VIv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~v- 154 (427)
T PRK05994 80 AALAVASGHAAQFLVFHTLLQPG--DEFIAAR--KLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFI- 154 (427)
T ss_pred cEEEEcCHHHHHHHHHHHHhCCC--CEEEEec--CcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEE-
Confidence 45666666666666666655444 3555543 555553 333456788999988852 23333333 3333333
Q ss_pred ceeEe-eCCCcccccchHHHHHHHhhCCCceEE
Q 045642 275 VHAVM-ANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 275 Adav~-~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+.+. ..|.+. . -..++-+|++++++++|
T Consensus 155 -esp~NptG~v~-d--l~~I~~la~~~gi~liv 183 (427)
T PRK05994 155 -ESIANPGGTVT-D--IAAIAEVAHRAGLPLIV 183 (427)
T ss_pred -ECCCCCCCeec-C--HHHHHHHHHHcCCEEEE
Confidence 2221 122222 2 24577789999998886
No 158
>PRK06836 aspartate aminotransferase; Provisional
Probab=56.51 E-value=1.4e+02 Score=30.10 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=33.4
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT 257 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~ 257 (406)
+....+++|.|.+..+..++......| -.|++.+ |.+.+.. ..+...|+++..++
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vli~~--p~~~~~~--~~~~~~g~~v~~v~ 148 (394)
T PRK06836 94 LTADHIVMTCGAAGALNVALKAILNPG--DEVIVFA--PYFVEYR--FYVDNHGGKLVVVP 148 (394)
T ss_pred CCcCcEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCccHH--HHHHHcCCEEEEEe
Confidence 445567888877766666665554333 3455543 7776643 23456798888774
No 159
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=56.44 E-value=33 Score=32.77 Aligned_cols=101 Identities=23% Similarity=0.166 Sum_probs=63.2
Q ss_pred EEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceE--EEcc-hHHHHHhhcC-CEEEEcceeE
Q 045642 203 ILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAI--VITD-SAVFAMISRV-NMVIVGVHAV 278 (406)
Q Consensus 203 ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt--~I~D-sav~~~m~~v-d~VllGAdav 278 (406)
||+.|.+..|=..|.....+ ...+|+.+...+....... .++... -+.| ..+...+..+ |.|+--|-..
T Consensus 3 ILVtG~tGfiG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~ 75 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLA-AGHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQS 75 (314)
T ss_pred EEEEcCcccHHHHHHHHHHh-CCCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccccC
Confidence 78888877777777666533 2577777775544322111 222211 2233 4556667777 7777755555
Q ss_pred eeCCC---------cccccchHHHHHHHhhCCCceEEecCC
Q 045642 279 MANGG---------VIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 279 ~~nG~---------vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
...+. -+|-.||..+.-+|+..+++-+|.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss 116 (314)
T COG0451 76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116 (314)
T ss_pred chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 43333 578999999999999988877776555
No 160
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=56.28 E-value=1.1e+02 Score=30.33 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=56.4
Q ss_pred cccCcEEEeccChHHHHHHHHHH-HHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAA-KEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A-~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
+...++++|.|.+..+..++... .+.|. .|++ + .|.+.+...+ +...|.++..+.|- . .+.. -..
T Consensus 78 ~~~~~I~it~G~~~~i~~~~~~l~~~~gd--~Vl~-~-~p~y~~~~~~--~~~~g~~~~~v~~~--~-~l~~-----~~~ 143 (357)
T TIGR03539 78 LDPTAVLPVIGTKELVAWLPTLLGLGPGD--TVVI-P-ELAYPTYEVG--ALLAGATPVAADDP--T-ELDP-----VGP 143 (357)
T ss_pred CCcCeEEEccChHHHHHHHHHHHcCCCCC--EEEE-C-CCCcHHHHHH--HHhcCCEEeccCCh--h-hcCc-----cCc
Confidence 45567888988888777666554 22332 3444 3 7777665433 34568887777542 1 1211 022
Q ss_pred eeEeeCCCcccccchHH-------HHHHHhhCCCceEE
Q 045642 276 HAVMANGGVIAPAGLHV-------LALAAKKHDVPFVV 306 (406)
Q Consensus 276 dav~~nG~vvnk~GT~~-------lAl~Ak~~~vPv~V 306 (406)
..|+-+ ...|..|+.. ++-.|+++++++++
T Consensus 144 ~~v~~~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (357)
T TIGR03539 144 DLIWLN-SPGNPTGRVLSVDELRAIVAWARERGAVVAS 180 (357)
T ss_pred cEEEEe-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 333333 4678888643 67788999998885
No 161
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=55.89 E-value=85 Score=29.76 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=56.0
Q ss_pred HHHHHhcccCcEEEecc--ChHHHHHHHHHHHHcC-CceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhc
Q 045642 191 EQAMELIHQNEVILTLG--HSKFVKEFLCAAKEKK-RSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISR 267 (406)
Q Consensus 191 ~~a~~~I~~g~~ILT~g--~S~tV~~~L~~A~~~~-~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~ 267 (406)
+.|.++|+||++|..-| .++.=..++....+++ ++++++-........| ...|...| .
T Consensus 10 ~eAv~~I~DG~ti~~gGf~~~~~P~ali~~l~r~~~~~Ltlv~~~~g~~~~g---~~~L~~~G----------------~ 70 (222)
T TIGR02429 10 AEAVSVIPDGATIMIGGFGTAGQPFELIDALIDTGAKDLTIVSNNAGNGEIG---LAALLKAG----------------Q 70 (222)
T ss_pred HHHHhhCCCCCEEEECCcCCccCcHHHHHHHHhcCCCCcEEEecCCCCCCcc---HHHHHhCC----------------C
Confidence 34566899999999855 3455555566555555 6688877544322223 33344444 2
Q ss_pred CCEEEEcc---------eeEeeCCCcc---cccchHHHHHHHhhCCCceEEe
Q 045642 268 VNMVIVGV---------HAVMANGGVI---APAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 268 vd~VllGA---------dav~~nG~vv---nk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
+.+++.|- ...+.+|-+- -..||..-.+-|-..|+|++..
T Consensus 71 Vkr~i~s~~~~~~~~~~~~~~~~g~ie~~~~p~g~l~~~lrA~a~G~P~~~t 122 (222)
T TIGR02429 71 VRKLICSFPRQSDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFT 122 (222)
T ss_pred EeEEEccccCCCCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceee
Confidence 22222220 0011122221 2778998899999999998764
No 162
>PRK07050 cystathionine beta-lyase; Provisional
Probab=55.70 E-value=2.2e+02 Score=29.14 Aligned_cols=104 Identities=11% Similarity=0.056 Sum_probs=55.4
Q ss_pred hcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-HHHH-HHHHhCCCceEEEcc---hHHHHHhhcCCE
Q 045642 196 LIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-HILA-KELDKKGLKAIVITD---SAVFAMISRVNM 270 (406)
Q Consensus 196 ~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~~~a-~~L~~~GI~vt~I~D---sav~~~m~~vd~ 270 (406)
+.....+++|.|.+..+..++....+. .-+|++.. |.+.+ ..+. ..+...|+.++.+.. ..+...+..-++
T Consensus 77 l~g~~~~l~~~sgt~Ai~~~l~al~~~--GD~Vl~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tk 152 (394)
T PRK07050 77 IEGGRHALLQPSGLAAISLVYFGLVKA--GDDVLIPD--NAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTR 152 (394)
T ss_pred HhCCCeEEEeccHHHHHHHHHHHHhCC--CCEEEEec--CCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCe
Confidence 333334666666666666666555433 34566643 55555 3333 345678999988842 334444433344
Q ss_pred EEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 271 VIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 271 VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+|+-. . .+.-.....=-..++-+|+.++++|++
T Consensus 153 lV~le-~--p~Np~~~~~di~~I~~ia~~~gi~liv 185 (394)
T PRK07050 153 LIWLE-A--PGSVTMEVPDVPAITAAARARGVVTAI 185 (394)
T ss_pred EEEEE-C--CCCCCccHhhHHHHHHHHHHcCCEEEE
Confidence 44311 1 111111222234567788999998876
No 163
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=55.45 E-value=1.5e+02 Score=29.79 Aligned_cols=94 Identities=17% Similarity=0.093 Sum_probs=52.3
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc---h-------HHHHH-hhcCC
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD---S-------AVFAM-ISRVN 269 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D---s-------av~~~-m~~vd 269 (406)
.+++|.|.+..+..++......|....|++. .|.+.+.... ....|+++..++- . .+... .+++.
T Consensus 92 ~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 167 (393)
T TIGR03538 92 HVLPVNGTREALFAFAQAVINPGQAPLVVMP--NPFYQIYEGA--ALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQ 167 (393)
T ss_pred eEEECCCcHHHHHHHHHHHcCCCCcceEEec--CCCCcchHHH--HHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcce
Confidence 4677888887777777766544543334443 6777764333 3356777766642 1 11111 12343
Q ss_pred EEEEcceeEeeCCCcccccch-------HHHHHHHhhCCCceEE
Q 045642 270 MVIVGVHAVMANGGVIAPAGL-------HVLALAAKKHDVPFVV 306 (406)
Q Consensus 270 ~VllGAdav~~nG~vvnk~GT-------~~lAl~Ak~~~vPv~V 306 (406)
.+++ + .--|++|+ ..++-.|+.+++.+++
T Consensus 168 ~i~l-------~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 203 (393)
T TIGR03538 168 LLFV-------C-SPGNPTGAVLSLDTLKKLIELADQYGFIIAS 203 (393)
T ss_pred EEEE-------e-CCCCCcCcccCHHHHHHHHHHHHHCCEEEEE
Confidence 3333 2 34567775 5567778888876553
No 164
>PRK07324 transaminase; Validated
Probab=55.17 E-value=1e+02 Score=30.94 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=55.6
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch----------HHHHHh-
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS----------AVFAMI- 265 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds----------av~~~m- 265 (406)
+....+++|.|.+..+..++......|. +|++. .|.+.+.. ..+...|.++..++-. ++...+
T Consensus 78 ~~~~~vi~t~G~~~al~~~~~~l~~~gd--~Vl~~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~ 151 (373)
T PRK07324 78 VKPENILQTNGATGANFLVLYALVEPGD--HVISV--YPTYQQLY--DIPESLGAEVDYWQLKEENGWLPDLDELRRLVR 151 (373)
T ss_pred CChhhEEEcCChHHHHHHHHHHhCCCCC--EEEEc--CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHhCC
Confidence 3445678888887777666666553343 45553 56665532 2334568777766521 222222
Q ss_pred hcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 266 SRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 266 ~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
++...|++. .-=-+.|.++.+.--..++-.|++|++.+++
T Consensus 152 ~~~kli~i~-~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 152 PNTKLICIN-NANNPTGALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CCCcEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 233333332 2212334444444356677778999986664
No 165
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=55.01 E-value=1.9e+02 Score=29.15 Aligned_cols=112 Identities=16% Similarity=0.116 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHh-----cccC-cEEEeccChHHHHHHHHHHHHc-CCceEEEEecCCCCcchHHHHHHHHhCCCceEE
Q 045642 183 NTCREGIAEQAMEL-----IHQN-EVILTLGHSKFVKEFLCAAKEK-KRSFEVFIADGAPKFEGHILAKELDKKGLKAIV 255 (406)
Q Consensus 183 ~~~~~~I~~~a~~~-----I~~g-~~ILT~g~S~tV~~~L~~A~~~-~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~ 255 (406)
...++.|+++-.++ +... .+++|.|.+..+..++....+. |..-.|+|. .|.+.+...+ +...|+++..
T Consensus 68 ~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~--~P~y~~~~~~--~~~~g~~~~~ 143 (396)
T PRK09147 68 PALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCP--NPFYQIYEGA--ALLAGAEPYF 143 (396)
T ss_pred HHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEc--CCCccchHHH--HHhcCCEEEE
Confidence 34455565544332 3333 5777888887777666666533 223445554 7777765433 3446777777
Q ss_pred Ecch----------HH-HHHhhcCCEEEEcceeEeeCCCcccccch-------HHHHHHHhhCCCceEE
Q 045642 256 ITDS----------AV-FAMISRVNMVIVGVHAVMANGGVIAPAGL-------HVLALAAKKHDVPFVV 306 (406)
Q Consensus 256 I~Ds----------av-~~~m~~vd~VllGAdav~~nG~vvnk~GT-------~~lAl~Ak~~~vPv~V 306 (406)
++-. ++ ..+-+++..+++ + .--|++|+ ..++-.|+.|++.+++
T Consensus 144 vp~~~~~~~~~d~~~l~~~~~~~~k~i~l-------~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 204 (396)
T PRK09147 144 LNCDPANNFAPDFDAVPAEVWARTQLLFV-------C-SPGNPTGAVLPLDDWKKLFALSDRYGFVIAS 204 (396)
T ss_pred eccCccccCccCHHHHHHHHhhccEEEEE-------c-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEe
Confidence 6421 12 112233433333 3 34577774 4456677888887663
No 166
>PRK07049 methionine gamma-lyase; Validated
Probab=54.64 E-value=2e+02 Score=29.84 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=35.6
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH-HH-HHHHHhCCCceEEEcc
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH-IL-AKELDKKGLKAIVITD 258 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~-~~-a~~L~~~GI~vt~I~D 258 (406)
..+.|+|-|.+..+..+|....+.|. +|++ ..|.+.|. .+ .+.|...|+++..++|
T Consensus 98 ~~~~iv~~sG~~Ai~~~l~al~~~Gd--~Vv~--~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~ 155 (427)
T PRK07049 98 AESAALFSSGMSAIATTLLAFVRPGD--VILH--SQPLYGGTETLLAKTFRNFGVGAVGFAD 155 (427)
T ss_pred CCcEEEEccHHHHHHHHHHHHhCCCC--EEEE--cCCCcccHHHHHHHHHHhcCcEEEEEeC
Confidence 44678887777776666666664553 4444 34777774 33 4456788998655554
No 167
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=54.61 E-value=1.2e+02 Score=31.00 Aligned_cols=94 Identities=20% Similarity=0.140 Sum_probs=48.2
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-H-HHHHHHHhCCCceEEEcch---HHHHHh-hcCCEEEEcc
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-H-ILAKELDKKGLKAIVITDS---AVFAMI-SRVNMVIVGV 275 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~-~~a~~L~~~GI~vt~I~Ds---av~~~m-~~vd~VllGA 275 (406)
.+++-|.+..+..+|....+.| -+|++ +.|.+.| . .+...+...|+.+..+.-. .+...+ ++...|++-
T Consensus 79 ~i~~~sG~~Ai~~~l~all~~G--d~Vl~--~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie- 153 (388)
T PRK07811 79 GRAFSSGMAATDCLLRAVLRPG--DHIVI--PNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVE- 153 (388)
T ss_pred eEEeCCHHHHHHHHHHHHhCCC--CEEEE--cCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEE-
Confidence 3444444544555554444333 35555 4466665 2 3344455678888776422 222222 233333322
Q ss_pred eeEeeCCCcccccc----hHHHHHHHhhCCCceEEe
Q 045642 276 HAVMANGGVIAPAG----LHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 276 dav~~nG~vvnk~G----T~~lAl~Ak~~~vPv~V~ 307 (406)
...|..| -..++-+|+.++++++|=
T Consensus 154 -------~p~NPtg~~~dl~~I~~la~~~gi~lIvD 182 (388)
T PRK07811 154 -------TPTNPLLSITDIAALAELAHDAGAKVVVD 182 (388)
T ss_pred -------CCCCCcceecCHHHHHHHHHHcCCEEEEE
Confidence 1223333 345677889999988763
No 168
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=54.60 E-value=1.8e+02 Score=29.61 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=55.9
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-HHHHH-HHHhCCCceEEEcc---hHHHHHhhcCCEEEEc
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-HILAK-ELDKKGLKAIVITD---SAVFAMISRVNMVIVG 274 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~~~a~-~L~~~GI~vt~I~D---sav~~~m~~vd~VllG 274 (406)
.++++|-|.+..+..+|....+.|. +|++. .|.+.+ ..++. .+...|+++..+.. ..+...+..=+++|+-
T Consensus 66 ~~~~~~~sG~~Ai~~al~all~~GD--~Vl~~--~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~l 141 (377)
T TIGR01324 66 AGCYLYPSGLAAVTNSILAFVKAGD--HVLMV--DSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFL 141 (377)
T ss_pred CcEEEECcHHHHHHHHHHHhcCCCC--EEEEc--CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEE
Confidence 3567777777777767666554443 56655 455655 34443 46678999887732 3444444332333331
Q ss_pred ceeEeeCCCcccccchH----HHHHHHhhCCCceEE
Q 045642 275 VHAVMANGGVIAPAGLH----VLALAAKKHDVPFVV 306 (406)
Q Consensus 275 Adav~~nG~vvnk~GT~----~lAl~Ak~~~vPv~V 306 (406)
+ +..|..|.. .++-+|+.++++++|
T Consensus 142 ------e-sp~Np~g~~~dl~~I~~la~~~g~~liv 170 (377)
T TIGR01324 142 ------E-APSSITFEIQDIPAIAKAARNPGIVIMI 170 (377)
T ss_pred ------E-CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 1 334455543 367788999988876
No 169
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=54.57 E-value=89 Score=26.71 Aligned_cols=97 Identities=16% Similarity=0.261 Sum_probs=57.7
Q ss_pred EEeccChHHHHHHHHHHHHcCCceEEEEecCC--------------CCcch----HHHHHHHHhC--CCceEEEcch---
Q 045642 203 ILTLGHSKFVKEFLCAAKEKKRSFEVFIADGA--------------PKFEG----HILAKELDKK--GLKAIVITDS--- 259 (406)
Q Consensus 203 ILT~g~S~tV~~~L~~A~~~~~~f~ViV~Esr--------------P~~eG----~~~a~~L~~~--GI~vt~I~Ds--- 259 (406)
|+..|....=..+++.....|.. ++.+++.. +..-| ..+++.|.+. +++++.+...
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~-~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVG-KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 55666665555566666655542 34444332 11113 2445566654 3566555432
Q ss_pred -HHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecC
Q 045642 260 -AVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVAS 309 (406)
Q Consensus 260 -av~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ae 309 (406)
....++.+.|.||.+.|.. .-...+.-.|+.+++|++.+.-
T Consensus 81 ~~~~~~~~~~diVi~~~d~~---------~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNI---------AVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred hhHHHHhcCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEcC
Confidence 2245677899888887752 2356778889999999998753
No 170
>PRK14362 Maf-like protein; Provisional
Probab=54.30 E-value=78 Score=29.69 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=59.1
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEe---c-CCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHhh-cCCEEEEcc
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIA---D-GAPKFE-GHILAKELDKKGLKAIVITDSAVFAMIS-RVNMVIVGV 275 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~---E-srP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m~-~vd~VllGA 275 (406)
.|| -|.|..=.++|+.+ |-.|.|+.. | +....+ -..++.+|+..+- ..+.+ .-+.+||||
T Consensus 14 iIL-AS~SprR~eLL~~~---g~~f~v~~~~~dEe~~~~~~~p~~~v~~lA~~KA----------~~v~~~~~~~~VI~A 79 (207)
T PRK14362 14 VVL-ASGSPRRREFLEQM---GLPFEVILPGAAEPSPIEGEQPEAYARRAAEAKA----------RAVAADHAGRLVIAA 79 (207)
T ss_pred EEE-eCCCHHHHHHHHHC---CCCcEEECCCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHhCCCCEEEEe
Confidence 444 35565555566554 678988843 4 322222 3577888876541 11222 236799999
Q ss_pred eeEe-eCCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 276 HAVM-ANGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 276 dav~-~nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
|.|. -||.++.|-.+..-| ++-+..|.+..|.+.
T Consensus 80 DTvV~~~g~ilgKP~~~eeA~~~L~~lsG~~H~V~Tg 116 (207)
T PRK14362 80 DTVVALDGMILGKPADRADALSMLRRLAGRTHEVVSA 116 (207)
T ss_pred CeEEEeCCEEcCCCCCHHHHHHHHHHhCCCceEEEEE
Confidence 9965 789999999988766 566667776666544
No 171
>PLN02242 methionine gamma-lyase
Probab=54.20 E-value=1.5e+02 Score=30.67 Aligned_cols=102 Identities=18% Similarity=0.135 Sum_probs=55.3
Q ss_pred HHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH-HHH-HHHHh-CCCceEEEc--c-hHHHHHhhc
Q 045642 194 MELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH-ILA-KELDK-KGLKAIVIT--D-SAVFAMISR 267 (406)
Q Consensus 194 ~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~-~~a-~~L~~-~GI~vt~I~--D-sav~~~m~~ 267 (406)
+++......++|-|.+..+..+|....+.|. +|++.+ |.+.+. .+. ..+.+ .|++++.+. | ..+...+..
T Consensus 86 A~l~g~~~~l~~~sG~~Ai~~al~al~~~GD--~Vl~~~--~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~ 161 (418)
T PLN02242 86 AALEGTEAAYCTASGMSAISSVLLQLCSSGG--HVVASN--TLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVP 161 (418)
T ss_pred HHHhCCCeEEEEccHHHHHHHHHHHHhCCCC--EEEEcC--CcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCc
Confidence 3344334566776767666666666554443 455443 666553 332 33444 798887664 2 233344432
Q ss_pred -CCEEEEcceeEeeCCCcccccch----HHHHHHHhhCCCceEE
Q 045642 268 -VNMVIVGVHAVMANGGVIAPAGL----HVLALAAKKHDVPFVV 306 (406)
Q Consensus 268 -vd~VllGAdav~~nG~vvnk~GT----~~lAl~Ak~~~vPv~V 306 (406)
-+++|+-. +.-|..|. ..++-+|++++++++|
T Consensus 162 ~~tklV~le-------sp~NPtG~v~dl~~I~~la~~~gi~liv 198 (418)
T PLN02242 162 GKTKVLYFE-------SISNPTLTVADIPELARIAHEKGVTVVV 198 (418)
T ss_pred CCCEEEEEe-------cCCCCCCcccCHHHHHHHHHHhCCEEEE
Confidence 13433322 23344444 3567788999988876
No 172
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=53.99 E-value=2.6e+02 Score=28.52 Aligned_cols=101 Identities=12% Similarity=0.150 Sum_probs=50.5
Q ss_pred CcEEEeccChHHHHHHHHHHH--HcCCceEEEEecCCCCcchH-HHHHHH-HhCCCceEEEcc--------hHHHHHh-h
Q 045642 200 NEVILTLGHSKFVKEFLCAAK--EKKRSFEVFIADGAPKFEGH-ILAKEL-DKKGLKAIVITD--------SAVFAMI-S 266 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~--~~~~~f~ViV~EsrP~~eG~-~~a~~L-~~~GI~vt~I~D--------sav~~~m-~ 266 (406)
.++++|.|.+..+..++.... ..+..-+|++.. |.+.+. ...+.+ ...|+++..++- ..+...+ +
T Consensus 95 ~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 172 (424)
T PLN02855 95 REIVFTRNATEAINLVAYTWGLANLKPGDEVILSV--AEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSE 172 (424)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECC--CccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence 467888776666555554321 112233556554 333332 222333 457888887742 1222223 2
Q ss_pred cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 267 RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+...|++. +.-...|.+.. -..++-+|+.++++|+|
T Consensus 173 ~t~lv~i~-~~~n~tG~~~~---~~~I~~l~~~~g~~viv 208 (424)
T PLN02855 173 KTKLVATH-HVSNVLGSILP---VEDIVHWAHAVGAKVLV 208 (424)
T ss_pred CceEEEEe-CccccccccCC---HHHHHHHHHHcCCEEEE
Confidence 34444333 23233444443 13577788999887776
No 173
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=53.57 E-value=32 Score=31.67 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=49.8
Q ss_pred eEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcc----cccchHHHHHHHhhCC
Q 045642 226 FEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVI----APAGLHVLALAAKKHD 301 (406)
Q Consensus 226 f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vv----nk~GT~~lAl~Ak~~~ 301 (406)
+-|.+....+.-....+.+.|...|+++.++..... .-++++|.++++-- .+... ...+....-.-+-..+
T Consensus 3 i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~-~~l~~~d~iii~GG----~~~~~~~~~~~~~~~~~i~~~~~~~ 77 (200)
T PRK13527 3 IGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP-GDLPDCDALIIPGG----ESTTIGRLMKREGILDEIKEKIEEG 77 (200)
T ss_pred EEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh-HHhccCCEEEECCC----cHHHHHHHHhhccHHHHHHHHHHCC
Confidence 456677766655556778888899987776654432 23567787777531 11111 1222222223334478
Q ss_pred CceEEecCCccccc
Q 045642 302 VPFVVVASTHELCS 315 (406)
Q Consensus 302 vPv~V~aes~K~~~ 315 (406)
+|++.+|--+-+.-
T Consensus 78 ~pilGIC~G~Qll~ 91 (200)
T PRK13527 78 LPILGTCAGLILLA 91 (200)
T ss_pred CeEEEECHHHHHHH
Confidence 99999987665543
No 174
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=53.47 E-value=70 Score=29.42 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=48.4
Q ss_pred EEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCccccc-chHHHHHHHhhCCCceE
Q 045642 227 EVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPA-GLHVLALAAKKHDVPFV 305 (406)
Q Consensus 227 ~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~-GT~~lAl~Ak~~~vPv~ 305 (406)
+|.|++-.-.+. ..+++.|.+.|.++.++.+. .-++++|.++++--.... ...... +......-+...++|++
T Consensus 2 ~~~v~~~~~~~~-~~~~~~l~~~G~~~~~~~~~---~~~~~~d~iii~G~~~~~--~~~~~~~~~~~~i~~~~~~~~Pil 75 (200)
T PRK13143 2 MIVIIDYGVGNL-RSVSKALERAGAEVVITSDP---EEILDADGIVLPGVGAFG--AAMENLSPLRDVILEAARSGKPFL 75 (200)
T ss_pred eEEEEECCCccH-HHHHHHHHHCCCeEEEECCH---HHHccCCEEEECCCCCHH--HHHHHHHHHHHHHHHHHHcCCCEE
Confidence 455555442222 68899999999999988653 234678888886410000 001101 11222233445789999
Q ss_pred EecCCccccc
Q 045642 306 VVASTHELCS 315 (406)
Q Consensus 306 V~aes~K~~~ 315 (406)
.+|--+-+.-
T Consensus 76 gIC~G~q~l~ 85 (200)
T PRK13143 76 GICLGMQLLF 85 (200)
T ss_pred EECHHHHHHh
Confidence 9998776654
No 175
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=53.41 E-value=9.1 Score=39.29 Aligned_cols=52 Identities=27% Similarity=0.287 Sum_probs=31.1
Q ss_pred HHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCcccc
Q 045642 261 VFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELC 314 (406)
Q Consensus 261 v~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~ 314 (406)
.-..+.++|.||.|-=.+- .....--....+|-.|+.|+|||+++|.+....
T Consensus 278 l~~~l~~aDlVITGEG~~D--~Qtl~GK~p~~Va~~A~~~~vPviav~G~~~~~ 329 (377)
T PF02595_consen 278 LEERLEDADLVITGEGRLD--AQTLAGKVPGGVARLAKKHGVPVIAVAGSVDLD 329 (377)
T ss_dssp HHHHCCC-SEEEE--CECS--TTTTTTCHHHHHHCCHCCTT--EEEEECEC-TT
T ss_pred HHHHhcCCCEEEECccccc--cccCCCcHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 4455678999999965432 223333345567888999999999999985543
No 176
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=53.24 E-value=58 Score=29.17 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=24.7
Q ss_pred EEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHH
Q 045642 203 ILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAK 244 (406)
Q Consensus 203 ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~ 244 (406)
|-||-....+.+.|....++..+++|+|++......-...++
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~ 44 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR 44 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh
Confidence 445666666677776666544566777766554443344444
No 177
>PRK05967 cystathionine beta-lyase; Provisional
Probab=53.18 E-value=1.7e+02 Score=30.16 Aligned_cols=98 Identities=11% Similarity=0.120 Sum_probs=57.2
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-HHHH-HHHHhCCCceEEEcc---hHHHHHhh-cCCEEEEc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-HILA-KELDKKGLKAIVITD---SAVFAMIS-RVNMVIVG 274 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~~~a-~~L~~~GI~vt~I~D---sav~~~m~-~vd~VllG 274 (406)
+.|+|.|.+..+..++....+.|. +|++. .|.+.| +.+. ..+...|++++++.. .++...+. +...|++-
T Consensus 81 ~~v~~sSG~aAi~~~l~all~~GD--~Vlv~--~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~le 156 (395)
T PRK05967 81 GTILVPSGLAAVTVPFLGFLSPGD--HALIV--DSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTE 156 (395)
T ss_pred CEEEECcHHHHHHHHHHHhcCCCC--EEEEc--cCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 467887766666666666654454 55655 566766 3334 567788999999853 23454453 33333333
Q ss_pred ceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 275 VHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 275 Adav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
.-+ | -+....=-..++-+|++++++|+|
T Consensus 157 sPs---N-P~l~v~dl~~I~~la~~~g~~vvV 184 (395)
T PRK05967 157 APG---S-NTFEMQDIPAIAEAAHRHGAIVMM 184 (395)
T ss_pred CCC---C-CCCcHHHHHHHHHHHHHhCCEEEE
Confidence 211 1 122222234577788999987776
No 178
>PRK06460 hypothetical protein; Provisional
Probab=53.07 E-value=2.2e+02 Score=28.90 Aligned_cols=96 Identities=13% Similarity=0.069 Sum_probs=44.9
Q ss_pred EEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-H-HHHHHHHhCCCceEEEcc---hHHHHHh-hcCCEEEEcce
Q 045642 203 ILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-H-ILAKELDKKGLKAIVITD---SAVFAMI-SRVNMVIVGVH 276 (406)
Q Consensus 203 ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~-~~a~~L~~~GI~vt~I~D---sav~~~m-~~vd~VllGAd 276 (406)
+++-|.+..+..++....+.|. +|++. .|.+.+ . .+...+...|+.+..++- ..+..+. ++...|++ ..
T Consensus 64 v~~~sG~~ai~~~l~al~~~Gd--~Vl~~--~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l-~s 138 (376)
T PRK06460 64 VAFSSGMGAISTTALALLKPGN--SVLVH--RDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFV-EN 138 (376)
T ss_pred EEeCCHHHHHHHHHHHHhCCCC--EEEEe--cCCcCcHHHHHHHHHHhhCcEEEEECCCCHHHHHHhcCCCceEEEE-EC
Confidence 3433334444444444443333 45553 233322 2 333455667888777742 1222222 23444554 21
Q ss_pred eEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 277 AVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 277 av~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
---+.|.+... -.++-+|+.++++|+|
T Consensus 139 p~NPtG~v~d~---~~I~~la~~~g~~viv 165 (376)
T PRK06460 139 ITNPLLRVVDI---TELSKVCKENGSILIV 165 (376)
T ss_pred CCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 11223444432 2467778899987765
No 179
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=52.97 E-value=46 Score=32.28 Aligned_cols=81 Identities=19% Similarity=0.146 Sum_probs=47.9
Q ss_pred CceEEEEecCCCCcchHHHHHHHHhCCCceEEEc-chHHHHHhhcCCEEEEcceeEeeCCCccccc-chHHHHHHHhhCC
Q 045642 224 RSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT-DSAVFAMISRVNMVIVGVHAVMANGGVIAPA-GLHVLALAAKKHD 301 (406)
Q Consensus 224 ~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~-Dsav~~~m~~vd~VllGAdav~~nG~vvnk~-GT~~lAl~Ak~~~ 301 (406)
...++.|+-..|.. +++ ..|+....-- -..+...+.++|.||+|...++.+..-.... --..+...|+.++
T Consensus 27 ~~~~~~v~s~~p~~----~~~---~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~ 99 (298)
T TIGR03609 27 PGVEPTVLSNDPAE----TAK---LYGVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFG 99 (298)
T ss_pred CCCeEEEecCChHH----HHh---hcCceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcC
Confidence 34556666444432 222 2265543222 2245566789999999988888764321111 1123567889999
Q ss_pred CceEEecCCc
Q 045642 302 VPFVVVASTH 311 (406)
Q Consensus 302 vPv~V~aes~ 311 (406)
+|+++++.++
T Consensus 100 k~~~~~g~gi 109 (298)
T TIGR03609 100 KPVILWGQGI 109 (298)
T ss_pred CCEEEEeccc
Confidence 9999988764
No 180
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=52.91 E-value=62 Score=30.15 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=57.2
Q ss_pred cCcEEEeccChHHHHHHHHH-HHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc----hHHHHHhhc-----
Q 045642 199 QNEVILTLGHSKFVKEFLCA-AKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD----SAVFAMISR----- 267 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~-A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D----sav~~~m~~----- 267 (406)
.|.+||..|.++.+=..+.. ..++ ..+|+++...+ .+...+...+...|.++..+ .| ..+..++.+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~--G~~V~~~~r~~-~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQA--GAEVILNGRDP-AKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHc--CCEEEEEeCCH-HHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 46678888877766665544 3334 45787775443 33345566676666555443 33 234444433
Q ss_pred --CCEEEEcceeEeeCCCc-------------ccccchHHHHHHHhhC----CCceEEecCC
Q 045642 268 --VNMVIVGVHAVMANGGV-------------IAPAGLHVLALAAKKH----DVPFVVVAST 310 (406)
Q Consensus 268 --vd~VllGAdav~~nG~v-------------vnk~GT~~lAl~Ak~~----~vPv~V~aes 310 (406)
+|.||..|-. ...+.. +|-.|+..+..++..+ +...+|...+
T Consensus 86 ~~~d~li~~ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss 146 (255)
T PRK07523 86 GPIDILVNNAGM-QFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIAS 146 (255)
T ss_pred CCCCEEEECCCC-CCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEcc
Confidence 5666654421 111111 4556777777666532 4445555443
No 181
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=52.83 E-value=2.1e+02 Score=28.24 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=55.1
Q ss_pred cccC-cEEEeccChHHHHHHHHHHHHcCC-ceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch----------HHHHH
Q 045642 197 IHQN-EVILTLGHSKFVKEFLCAAKEKKR-SFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS----------AVFAM 264 (406)
Q Consensus 197 I~~g-~~ILT~g~S~tV~~~L~~A~~~~~-~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds----------av~~~ 264 (406)
+... .+|+|.|.+..+..++......|. .-+|++. .|.+.+...+- ...|+++..++.. .+-..
T Consensus 57 ~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~--~p~y~~~~~~~--~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 132 (350)
T TIGR03537 57 LDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFG--TPGYPVYERGA--LFAGGEPTAVKLKKEDGFLLRLEKVEKS 132 (350)
T ss_pred CCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEc--CCCCcchHHHH--HhcCCEEEEcccCcccCCccCHHHHHHh
Confidence 3344 688888888777666665543331 2344444 57777654333 4578877766432 11122
Q ss_pred hhcCCEEEEcceeEeeCCCcccccch-------HHHHHHHhhCCCceEE
Q 045642 265 ISRVNMVIVGVHAVMANGGVIAPAGL-------HVLALAAKKHDVPFVV 306 (406)
Q Consensus 265 m~~vd~VllGAdav~~nG~vvnk~GT-------~~lAl~Ak~~~vPv~V 306 (406)
+.+-.++ ++-+ ..-|..|+ ..++-.|+.+++.+++
T Consensus 133 ~~~~~~~------i~i~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 174 (350)
T TIGR03537 133 ILEETKI------VWIN-YPHNPTGATAPRSYLKETIAMCREHGIILCS 174 (350)
T ss_pred hhhccEE------EEEe-CCCCCcCcccCHHHHHHHHHHHHHcCcEEEE
Confidence 2222232 2222 24578883 4466678889988775
No 182
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=52.81 E-value=61 Score=27.79 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=51.4
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
.+..||.+|...+...++..+.+.|.+ +|+|+- |-......+++.+ .+..+.+++-......++++|.||-..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~-~i~i~n-Rt~~ra~~l~~~~--~~~~~~~~~~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAK-EITIVN-RTPERAEALAEEF--GGVNIEAIPLEDLEEALQEADIVINAT 83 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSS-EEEEEE-SSHHHHHHHHHHH--TGCSEEEEEGGGHCHHHHTESEEEE-S
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCC-EEEEEE-CCHHHHHHHHHHc--CccccceeeHHHHHHHHhhCCeEEEec
Confidence 578999999999999999888876644 455553 4333445667777 455566666666778888999887654
No 183
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=52.65 E-value=1.6e+02 Score=32.34 Aligned_cols=83 Identities=19% Similarity=0.128 Sum_probs=51.1
Q ss_pred HHHHHHhcccCcEEEecc--ChHHHHHHHHHHHH-c--------------------C-CceEEEEecCCCCcchHHHHHH
Q 045642 190 AEQAMELIHQNEVILTLG--HSKFVKEFLCAAKE-K--------------------K-RSFEVFIADGAPKFEGHILAKE 245 (406)
Q Consensus 190 ~~~a~~~I~~g~~ILT~g--~S~tV~~~L~~A~~-~--------------------~-~~f~ViV~EsrP~~eG~~~a~~ 245 (406)
.+.+++.|.+...|..+| .|..+...+..... - + ...-+++.-++-..+-..+++.
T Consensus 458 l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~d~~~~~~~~~~l~~~DvvI~iS~sG~t~e~i~~~~~ 537 (638)
T PRK14101 458 VEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDV 537 (638)
T ss_pred HHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcCCceEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 345667777777776654 45555444333221 1 1 1122223333333455788999
Q ss_pred HHhCCCceEEEcchHHHHHhhcCCEEEE
Q 045642 246 LDKKGLKAIVITDSAVFAMISRVNMVIV 273 (406)
Q Consensus 246 L~~~GI~vt~I~Dsav~~~m~~vd~Vll 273 (406)
+++.|+++..|+|. -..+.+.+|.+|.
T Consensus 538 Ak~~Ga~vIaIT~~-~spLa~~aD~~L~ 564 (638)
T PRK14101 538 AMQAGAKVIAITSS-NTPLAKRATVALE 564 (638)
T ss_pred HHHCCCeEEEEcCC-CChhHhhCCEEEE
Confidence 99999999999996 5667778998874
No 184
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=52.54 E-value=85 Score=30.23 Aligned_cols=103 Identities=19% Similarity=0.258 Sum_probs=53.2
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHH----------HHHh-hc
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAV----------FAMI-SR 267 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav----------~~~m-~~ 267 (406)
...+++|.|.+..+..++..+... .-+|++. .|.+.+. ...+...|+.+..++...- .... ++
T Consensus 59 ~~~~~~~~~~t~a~~~~~~~~~~~--g~~vl~~--~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 132 (350)
T cd00609 59 PEEIVVTNGAQEALSLLLRALLNP--GDEVLVP--DPTYPGY--EAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPK 132 (350)
T ss_pred cceEEEecCcHHHHHHHHHHhCCC--CCEEEEc--CCCchhH--HHHHHHCCCEEEEEecccccCCccCHHHHHhhcCcc
Confidence 445788888777777777766533 3345554 3444443 3344456676665544321 1111 23
Q ss_pred CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 268 VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 268 vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
+..|++-. .-...|.+...---..++-+|+.+++++++=+
T Consensus 133 ~~~v~i~~-~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~ 172 (350)
T cd00609 133 TKLLYLNN-PNNPTGAVLSEEELEELAELAKKHGILIISDE 172 (350)
T ss_pred ceEEEEEC-CCCCCCcccCHHHHHHHHHHHHhCCeEEEEec
Confidence 44444432 22223333322122234467899999988743
No 185
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=52.52 E-value=52 Score=31.67 Aligned_cols=74 Identities=23% Similarity=0.231 Sum_probs=50.1
Q ss_pred EeccChHHHHHHHHHHHHc-CCc-e--EEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEe
Q 045642 204 LTLGHSKFVKEFLCAAKEK-KRS-F--EVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVM 279 (406)
Q Consensus 204 LT~g~S~tV~~~L~~A~~~-~~~-f--~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~ 279 (406)
++.-++..+.+.+.+++++ +-+ + -||+.-+.|.+|-+.-.+.|++ +|||+|=
T Consensus 127 ~~~~~d~~L~~~~~~~a~~~~~~~~~~Gvy~~~~GP~feT~AE~r~lr~------------------------~Gad~Vg 182 (245)
T PRK09136 127 FTHPYSPMLRQRLLAAARAAGVSLVDGGVYAATQGPRLETAAEIARLER------------------------DGCDLVG 182 (245)
T ss_pred CcccCCHHHHHHHHHHHHHcCCcEEeccEEEEeeCCCcCCHHHHHHHHH------------------------cCCCEEc
Confidence 3455677777777666532 323 3 2888888888876544444432 2666664
Q ss_pred eCCCcccccchHHHHHHHhhCCCceEEecC
Q 045642 280 ANGGVIAPAGLHVLALAAKKHDVPFVVVAS 309 (406)
Q Consensus 280 ~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ae 309 (406)
+-+.+.|.+|++.++||.+++-
T Consensus 183 --------Ms~~pEa~~A~~~gi~~~~i~~ 204 (245)
T PRK09136 183 --------MTGMPEAALARELGLPYACLAL 204 (245)
T ss_pred --------CcHHHHHHHHHHcCCCEEEEEE
Confidence 4478899999999999999874
No 186
>PLN02828 formyltetrahydrofolate deformylase
Probab=52.49 E-value=70 Score=31.28 Aligned_cols=72 Identities=7% Similarity=0.212 Sum_probs=43.0
Q ss_pred EEEeccChHHHHHHHHHHHHcCC-ceEEEEecCCC-CcchHHHHHHHHhCCCceEEEcc-------hHHHHHhhcCCEEE
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKR-SFEVFIADGAP-KFEGHILAKELDKKGLKAIVITD-------SAVFAMISRVNMVI 272 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~-~f~ViV~EsrP-~~eG~~~a~~L~~~GI~vt~I~D-------sav~~~m~~vd~Vl 272 (406)
.||.-|..++...+|.... +|. +.+|..+-|.| ...+..+.+...+.|||+.+++. ..+...+.++|.++
T Consensus 74 avlvSg~g~nl~~ll~~~~-~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliV 152 (268)
T PLN02828 74 AVLASKQDHCLIDLLHRWQ-DGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLV 152 (268)
T ss_pred EEEEcCCChhHHHHHHhhh-cCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEE
Confidence 4676777777777777665 553 45555444443 22233344445678999998764 23444555677776
Q ss_pred Ec
Q 045642 273 VG 274 (406)
Q Consensus 273 lG 274 (406)
+.
T Consensus 153 LA 154 (268)
T PLN02828 153 LA 154 (268)
T ss_pred Ee
Confidence 64
No 187
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=51.99 E-value=1.2e+02 Score=27.66 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=55.8
Q ss_pred ccChHHHHHHHHHHHHcCCceEEEEecCCCC---cchHHHHHHHHhCCCceEEEcc----hHHHHHhhcCCEEEEcceeE
Q 045642 206 LGHSKFVKEFLCAAKEKKRSFEVFIADGAPK---FEGHILAKELDKKGLKAIVITD----SAVFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 206 ~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~---~eG~~~a~~L~~~GI~vt~I~D----sav~~~m~~vd~VllGAdav 278 (406)
.+....+.+.|+.|.+++...-|+.+ ..|+ ..+..+.+.|....+||....+ |+..++.--+|++++.-.+.
T Consensus 12 ~~~~~~l~~~l~~a~~~~~~~ivl~i-nspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~ 90 (178)
T cd07021 12 PGLAAFVERALKEAKEEGADAVVLDI-DTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGAT 90 (178)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEE-ECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCe
Confidence 34456788889999876644434444 4555 3568899999999999876655 23344455789999888777
Q ss_pred eeCCCcccccc
Q 045642 279 MANGGVIAPAG 289 (406)
Q Consensus 279 ~~nG~vvnk~G 289 (406)
+..-+++.-.|
T Consensus 91 iG~~~~v~~~~ 101 (178)
T cd07021 91 IGAAEPIPGDG 101 (178)
T ss_pred EecCeeEcCCC
Confidence 76655554333
No 188
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=51.61 E-value=2.4e+02 Score=27.70 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 240 HILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
...++.+.+.|+++..|+++.-..+.+.+|.+|.-.
T Consensus 111 ~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~ 146 (326)
T PRK10892 111 LALIPVLKRLHVPLICITGRPESSMARAADIHLCVK 146 (326)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeC
Confidence 577889999999999999998888888899988644
No 189
>PRK06091 membrane protein FdrA; Validated
Probab=51.60 E-value=1.1e+02 Score=33.12 Aligned_cols=135 Identities=15% Similarity=0.219 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH---H-----HHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCC
Q 045642 165 KKLKSELIKAVNELIEDINT---C-----REGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPK 236 (406)
Q Consensus 165 ~~~k~~l~~~i~~~~~e~~~---~-----~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~ 236 (406)
+..-+.+++.++++...... . .-+-...+.+.+.+.|..+..-....|...++.|.+.|+. -+++.+.-|.
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G~~-viI~S~gfg~ 153 (555)
T PRK06091 75 AGIAQAIMQQLEEALKQLAQGSGSSQSLTQVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRNLN-VMMFSDNVTL 153 (555)
T ss_pred hHHHHHHHHHHHHHhhccccccCCcCCCcccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcCCe-EEEEcCCCCH
Confidence 45667777778777764331 1 0112345666676678888777888999999999988843 3444443321
Q ss_pred cchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCC--CcccccchHHHHHH--HhhCCCceE
Q 045642 237 FEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANG--GVIAPAGLHVLALA--AKKHDVPFV 305 (406)
Q Consensus 237 ~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG--~vvnk~GT~~lAl~--Ak~~~vPv~ 305 (406)
..-+.+.+..++.|+.+ +-|++..+. ..++..-+. .++.-| ++++..||...+++ ++..++-|-
T Consensus 154 ~~E~~L~e~Ar~~Glrv-mGPNCG~~~-i~gl~lsF~---~~~~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S 221 (555)
T PRK06091 154 EDEIRLKTRAREKGLLV-MGPDCGTAM-IAGTPLAFA---NVMPEGNIGVIGASGTGIQELCSQIALAGEGIT 221 (555)
T ss_pred HHHHHHHHHHHHcCCEE-ECCCChhhh-hcCCccccc---CCCCCCCEEEEeCcHHHHHHHHHHHHHcCCCeE
Confidence 11234444444566532 457773333 344333221 223455 46899998877764 666776663
No 190
>PRK06767 methionine gamma-lyase; Provisional
Probab=51.50 E-value=1.6e+02 Score=29.89 Aligned_cols=103 Identities=11% Similarity=0.048 Sum_probs=50.7
Q ss_pred hcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-HHHHHH-HHhCCCceEEEc--c-hHHHHHh-hcCC
Q 045642 196 LIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-HILAKE-LDKKGLKAIVIT--D-SAVFAMI-SRVN 269 (406)
Q Consensus 196 ~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~~~a~~-L~~~GI~vt~I~--D-sav~~~m-~~vd 269 (406)
+....+.|++-+.+..+..+|....+.| -+|++. .|.+.+ ..+... +...|+++..+. | ..+...+ ++..
T Consensus 73 l~G~~~al~~~sG~~Ai~~~l~al~~~G--d~Vv~~--~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tk 148 (386)
T PRK06767 73 LEGGEEALAFGSGMAAISATLIGFLKAG--DHIICS--NGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTK 148 (386)
T ss_pred HhCCCcEEEECCHHHHHHHHHHHHhCCC--CEEEEc--CCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCce
Confidence 3333356666555555555554444333 355553 355444 233333 345688877763 2 2233333 3343
Q ss_pred EEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 270 MVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 270 ~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+|++- .---..|.+.. -..++-+|+.++++|+|
T Consensus 149 lV~le-sp~NptG~v~d---l~~I~~la~~~g~~viv 181 (386)
T PRK06767 149 LIFVE-TPINPTMKLID---LKQVIRVAKRNGLLVIV 181 (386)
T ss_pred EEEEe-CCCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 44432 11112233332 24677788999988876
No 191
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=51.35 E-value=83 Score=29.40 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=51.2
Q ss_pred EEEEecCCCCcchHHHHHHHHhCCCceEEEcchH-----HHHHhhcCCEEEEcceeEeeCCCcccccch-HHHHHHHhhC
Q 045642 227 EVFIADGAPKFEGHILAKELDKKGLKAIVITDSA-----VFAMISRVNMVIVGVHAVMANGGVIAPAGL-HVLALAAKKH 300 (406)
Q Consensus 227 ~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsa-----v~~~m~~vd~VllGAdav~~nG~vvnk~GT-~~lAl~Ak~~ 300 (406)
+|.|++..+.+.+ .+...|.+.|+.+.+++-.. ....+...|.+|++-- .|+ ....+. ..+..-|...
T Consensus 2 ~ilv~d~~~~~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGG----p~~-~~~~~~~~~~i~~~~~~ 75 (214)
T PRK07765 2 RILVVDNYDSFVF-NLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPG----PGT-PERAGASIDMVRACAAA 75 (214)
T ss_pred eEEEEECCCcHHH-HHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCC----CCC-hhhcchHHHHHHHHHhC
Confidence 6788888876655 47788999999999886542 1223456888887411 111 122332 2344455567
Q ss_pred CCceEEecCCcccc
Q 045642 301 DVPFVVVASTHELC 314 (406)
Q Consensus 301 ~vPv~V~aes~K~~ 314 (406)
++|++-+|=-+.+.
T Consensus 76 ~~PiLGIC~G~Qll 89 (214)
T PRK07765 76 GTPLLGVCLGHQAI 89 (214)
T ss_pred CCCEEEEccCHHHH
Confidence 89999988655543
No 192
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=51.32 E-value=87 Score=30.96 Aligned_cols=103 Identities=13% Similarity=0.117 Sum_probs=64.8
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEee
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMA 280 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~ 280 (406)
|..+..-....|...|+.+.++|.+.-|++.+.-+..+.+.+.+...+.|+.+ +=-+.++.+-+.......-......
T Consensus 67 DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girv--lGPNc~Gi~~~~~~~~~~~~~~~~~ 144 (291)
T PRK05678 67 NASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRL--IGPNCPGIITPGECKIGIMPGHIHK 144 (291)
T ss_pred CEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEE--ECCCCCcccccccceeeecCCCCCC
Confidence 66666666778889999998889888888888877555567777777777643 3222233332222221111111233
Q ss_pred CC--CcccccchHHHHHH--HhhCCCceE
Q 045642 281 NG--GVIAPAGLHVLALA--AKKHDVPFV 305 (406)
Q Consensus 281 nG--~vvnk~GT~~lAl~--Ak~~~vPv~ 305 (406)
-| ++++..|+...+++ |+..++-|-
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~giG~s 173 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDLGFGQS 173 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 45 57789998888765 677777663
No 193
>PRK07671 cystathionine beta-lyase; Provisional
Probab=51.22 E-value=2.2e+02 Score=28.84 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=48.9
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch--HHHHHHHHhCCCceEEEcch---HHHHHh-hcCCEEEEcc
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG--HILAKELDKKGLKAIVITDS---AVFAMI-SRVNMVIVGV 275 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG--~~~a~~L~~~GI~vt~I~Ds---av~~~m-~~vd~VllGA 275 (406)
.+++-+.+..+..++ ...+.| -+|++.. |.+.| ..+++.+...|++++.+... .+...+ ++...|++-
T Consensus 68 ~~~~~sG~aai~~~~-~~l~~G--d~Viv~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le- 141 (377)
T PRK07671 68 GFAFGSGMAAITAVM-MLFSSG--DHVILTD--DVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVE- 141 (377)
T ss_pred eEEeCCHHHHHHHHH-HHhCCC--CEEEECC--CccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEE-
Confidence 344444444444333 344334 3566544 66665 34555677889999888632 233333 233333331
Q ss_pred eeEeeCCCcccccch----HHHHHHHhhCCCceEE
Q 045642 276 HAVMANGGVIAPAGL----HVLALAAKKHDVPFVV 306 (406)
Q Consensus 276 dav~~nG~vvnk~GT----~~lAl~Ak~~~vPv~V 306 (406)
...|..|. -.++-+|+.++++++|
T Consensus 142 -------~P~NPtg~~~dl~~I~~la~~~g~~lvv 169 (377)
T PRK07671 142 -------TPTNPLLKITDIKKISTIAKEKGLLTIV 169 (377)
T ss_pred -------CCCCCCCcccCHHHHHHHHHHcCCEEEE
Confidence 12233343 3577788999988776
No 194
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=51.17 E-value=2.3e+02 Score=28.25 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=46.7
Q ss_pred cEEEeccChHHHHHHHHHHHHc-CCceEEEEecCCCCcchHHHHHHHH--hCCCceEEEcc--------hHHHHHh-hcC
Q 045642 201 EVILTLGHSKFVKEFLCAAKEK-KRSFEVFIADGAPKFEGHILAKELD--KKGLKAIVITD--------SAVFAMI-SRV 268 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~-~~~f~ViV~EsrP~~eG~~~a~~L~--~~GI~vt~I~D--------sav~~~m-~~v 268 (406)
.+++|.+.+..++..+..+... ++.-+|++. .|.+.....+..+. ..|+++..++- ..+...+ ++.
T Consensus 83 ~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~--~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t 160 (398)
T cd00613 83 NASLQDEATAAAEAAGLAAIRAYHKRNKVLVP--DSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEV 160 (398)
T ss_pred ceeccCchHHHHHHHHHHHHhcccCCCEEEEc--CccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCe
Confidence 4556654444455454444322 224455553 34443332222222 34566665532 1222223 233
Q ss_pred CEEEEcceeEeeCCCcccccch-HHHHHHHhhCCCceEE
Q 045642 269 NMVIVGVHAVMANGGVIAPAGL-HVLALAAKKHDVPFVV 306 (406)
Q Consensus 269 d~VllGAdav~~nG~vvnk~GT-~~lAl~Ak~~~vPv~V 306 (406)
..|++-. .-..|.+ ..- ..++-+|++++++++|
T Consensus 161 ~~viv~~--~~~~G~~---~~~l~~i~~la~~~g~~liv 194 (398)
T cd00613 161 AALMVQY--PNTLGVF---EDLIKEIADIAHSAGALVYV 194 (398)
T ss_pred EEEEEEC--CCCCcee---cchHHHHHHHHHhcCCEEEE
Confidence 3344432 2233333 243 5677788999998887
No 195
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=51.06 E-value=52 Score=30.03 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCC-CcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 240 HILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANG-GVIAPAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG-~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
..+++.|++.|++++++.+.. -++++|.|+++--.....- ......|....-.-+...++|++.+|--+-+.-
T Consensus 12 ~~~~~~l~~~g~~v~v~~~~~---~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~ 85 (198)
T cd01748 12 RSVANALERLGAEVIITSDPE---EILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQLLF 85 (198)
T ss_pred HHHHHHHHHCCCeEEEEcChH---HhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhc
Confidence 577899999999999988643 2567888888531100000 001123444444445557999999987666544
No 196
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=51.03 E-value=94 Score=25.58 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=33.7
Q ss_pred CcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcce
Q 045642 236 KFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVH 276 (406)
Q Consensus 236 ~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAd 276 (406)
..+-...++.+++.|+++..|++..-..+-+.+|.+|.-..
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~~ 106 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIPT 106 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEES
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEecC
Confidence 34456888899999999999999988888888888887543
No 197
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=51.01 E-value=1.7e+02 Score=29.06 Aligned_cols=133 Identities=16% Similarity=0.129 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCC
Q 045642 165 KKLKSELIKAVNELIE---------DINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAP 235 (406)
Q Consensus 165 ~~~k~~l~~~i~~~~~---------e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP 235 (406)
+.+++.+.+.++++-. -.....+.+.+..+++....+.|++.+.+.....++......|. .|+ ++ .|
T Consensus 50 ~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~~~~~gd--~vi-~~-~~ 125 (385)
T TIGR01825 50 PRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGD--IVL-SD-EL 125 (385)
T ss_pred HHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCC--EEE-EE-cc
Confidence 4556666666554311 01123445555555555544445554546666655555543332 344 33 36
Q ss_pred CcchHHHHHHHHhCCCceEEEc--ch-HHHHHhhc----CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 236 KFEGHILAKELDKKGLKAIVIT--DS-AVFAMISR----VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 236 ~~eG~~~a~~L~~~GI~vt~I~--Ds-av~~~m~~----vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
.+.+...+.. -.|+++..+. |- .+...+.. -+++++ ...+....|.+.. -..++-+|+.|++++++
T Consensus 126 ~~~~~~~~~~--~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~-~~~v~~~tG~~~~--~~~i~~l~~~~~~~li~ 198 (385)
T TIGR01825 126 NHASIIDGLR--LTKATKKIYKHADMDDLDRVLRENPSYGKKLIV-TDGVFSMDGDVAP--LPEIVELAERYGAVTYV 198 (385)
T ss_pred ccHHHHHHHH--hcCCceEEeCCCCHHHHHHHHHhhccCCCeEEE-EecCCcCCCCccC--HHHHHHHHHHhCCEEEE
Confidence 6555433323 3566654442 22 23333332 233333 2223333333333 24577788999988775
No 198
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=50.95 E-value=57 Score=33.99 Aligned_cols=109 Identities=17% Similarity=0.086 Sum_probs=59.2
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeE
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav 278 (406)
...+||+.|.+..|=.-|..... .+..+|++++........... .+.. .-.+.++.-......+.++|.|+--|-..
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll-~~G~~V~~ldr~~~~~~~~~~-~~~~-~~~~~~~~~Di~~~~~~~~D~ViHlAa~~ 195 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLI-GRGDEVIVIDNFFTGRKENLV-HLFG-NPRFELIRHDVVEPILLEVDQIYHLACPA 195 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHH-HCCCEEEEEeCCCCccHhHhh-hhcc-CCceEEEECccccccccCCCEEEECceec
Confidence 34678888988777766655442 234678877643221111111 1111 11333332222222345678777766322
Q ss_pred eeCCC--------cccccchHHHHHHHhhCCCceEEecCC
Q 045642 279 MANGG--------VIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 279 ~~nG~--------vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
..... -.|-.||..+.-+|+.+++.|+.+..+
T Consensus 196 ~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~ 235 (436)
T PLN02166 196 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTS 235 (436)
T ss_pred cchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcH
Confidence 11011 167889999999999999887665443
No 199
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=50.95 E-value=1.7e+02 Score=26.89 Aligned_cols=109 Identities=15% Similarity=0.199 Sum_probs=66.8
Q ss_pred HHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCC--------------Ccch----HHHHHHHHhC-
Q 045642 189 IAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAP--------------KFEG----HILAKELDKK- 249 (406)
Q Consensus 189 I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP--------------~~eG----~~~a~~L~~~- 249 (406)
++..+.+.|. +..|+..|....=..+.+.....|.. ++.+++... ..-| ..+++.|.+.
T Consensus 11 ~g~~~q~kl~-~~~VlviG~GglGs~ia~~La~~Gv~-~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 11 IGEEGQQRLL-NSHVLIIGAGGLGSPAALYLAGAGVG-TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred cCHHHHHHhc-CCCEEEECCCHHHHHHHHHHHHcCCC-eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 3445555664 45677888877777777777766642 445554331 1112 2456677664
Q ss_pred -CCceEEEcc----hHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 250 -GLKAIVITD----SAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 250 -GI~vt~I~D----sav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
.++++.+.. ..+..+++++|.||...|..- --..+.-.|+.+++|++...
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~---------~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFA---------TRYLINDACVALGTPLISAA 143 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 355554432 234557788999888776532 12457778999999998764
No 200
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=50.91 E-value=72 Score=31.48 Aligned_cols=104 Identities=12% Similarity=0.143 Sum_probs=65.0
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEee
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMA 280 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~ 280 (406)
|..+..-....|...|+++.++|.+.-|++.+.-+....+.+.+...+.|+.+ +=-+.++.+-+...+...-+.....
T Consensus 65 Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~giri--lGPNc~Giin~~~~~~~~~~~~~~~ 142 (286)
T TIGR01019 65 NASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRL--IGPNCPGIITPGECKIGIMPGHIHK 142 (286)
T ss_pred CEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEE--ECCCCceEEcccccceeeccccCCC
Confidence 67676777888999999999889888888888876655566667677777643 2222222222222211111112233
Q ss_pred CC--CcccccchHHHHHH--HhhCCCceEE
Q 045642 281 NG--GVIAPAGLHVLALA--AKKHDVPFVV 306 (406)
Q Consensus 281 nG--~vvnk~GT~~lAl~--Ak~~~vPv~V 306 (406)
.| ++++..|+...+++ |+..++.|--
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~giG~S~ 172 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGFGQST 172 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeEE
Confidence 45 46899998877765 6777877643
No 201
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=50.63 E-value=2.6e+02 Score=28.15 Aligned_cols=96 Identities=14% Similarity=0.192 Sum_probs=52.2
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-H-HHHHHHHhCCCceEEEcch---HHHHHh-hcCCEEEEcc
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-H-ILAKELDKKGLKAIVITDS---AVFAMI-SRVNMVIVGV 275 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~-~~a~~L~~~GI~vt~I~Ds---av~~~m-~~vd~VllGA 275 (406)
.|++-|.+..+..++ .+...| -+|++. .|.+.| . .+...+...|+++..+.-. .+...+ ++...|++-
T Consensus 70 ~~~~~sG~~ai~~~~-~ll~~G--d~Vl~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le- 143 (366)
T PRK08247 70 GFACSSGMAAIQLVM-SLFRSG--DELIVS--SDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIE- 143 (366)
T ss_pred EEEEcCHHHHHHHHH-HHhCCC--CEEEEe--cCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEE-
Confidence 466666665555443 444334 355554 366665 2 3445567789999887532 232333 233344431
Q ss_pred eeEeeCCCcccccch----HHHHHHHhhCCCceEEecCCc
Q 045642 276 HAVMANGGVIAPAGL----HVLALAAKKHDVPFVVVASTH 311 (406)
Q Consensus 276 dav~~nG~vvnk~GT----~~lAl~Ak~~~vPv~V~aes~ 311 (406)
..-|..|+ ..++-+|+++++++++ =++|
T Consensus 144 -------~P~NP~~~~~dl~~I~~la~~~g~~lIv-D~t~ 175 (366)
T PRK08247 144 -------TPTNPLMQETDIAAIAKIAKKHGLLLIV-DNTF 175 (366)
T ss_pred -------CCCCCCCcHHHHHHHHHHHHHcCCEEEE-ECCC
Confidence 12244554 3467788999988765 3444
No 202
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=50.54 E-value=11 Score=31.26 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=49.1
Q ss_pred EEEeccChHHHHHHHHHHHHcC-CceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc-hHHHHHh--hcCCEEEEccee
Q 045642 202 VILTLGHSKFVKEFLCAAKEKK-RSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD-SAVFAMI--SRVNMVIVGVHA 277 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~-~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D-sav~~~m--~~vd~VllGAda 277 (406)
.||.+|+. .=++.|..+..+. +.-+||++-..|+.... .+ .+++ -+.| ..+..+. .++|+||+|.+.
T Consensus 2 kVLviGsG-gREHAia~~l~~s~~v~~v~~aPGN~G~~~~------~~-~~~~-~~~d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 2 KVLVIGSG-GREHAIAWKLSQSPSVEEVYVAPGNPGTAEL------GK-NVPI-DITDPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp EEEEEESS-HHHHHHHHHHTTCTTEEEEEEEE--TTGGGT------SE-EE-S--TT-HHHHHHHHHHTTESEEEESSHH
T ss_pred EEEEECCC-HHHHHHHHHHhcCCCCCEEEEeCCCHHHHhh------ce-ecCC-CCCCHHHHHHHHHHcCCCEEEECChH
Confidence 57777754 4466666665443 45689999887764321 00 0111 1122 1232332 369999999999
Q ss_pred EeeCCCcccccchHHHHHHHhhCCCceE
Q 045642 278 VMANGGVIAPAGLHVLALAAKKHDVPFV 305 (406)
Q Consensus 278 v~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 305 (406)
-+.+| ++=.-+..|+|++
T Consensus 73 pL~~G----------l~D~l~~~gi~vf 90 (100)
T PF02844_consen 73 PLVAG----------LADALRAAGIPVF 90 (100)
T ss_dssp HHHTT----------HHHHHHHTT-CEE
T ss_pred HHHHH----------HHHHHHHCCCcEE
Confidence 99987 6666677888876
No 203
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=50.42 E-value=1.2e+02 Score=28.89 Aligned_cols=95 Identities=11% Similarity=0.052 Sum_probs=62.5
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeE
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav 278 (406)
.|..||+.|......+=+....+.|.+++|+-.+-.|..+ .|.+.| .++++.-.--...+..++.|+..++-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~------~l~~~~-~i~~~~r~~~~~dl~g~~LViaATdD- 95 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL------DLKKYG-NLKLIKGNYDKEFIKDKHLIVIATDD- 95 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH------HHHhCC-CEEEEeCCCChHHhCCCcEEEECCCC-
Confidence 4668999999998888777777677777777666544432 244443 24555433333345677777777642
Q ss_pred eeCCCcccccchHHHHHHHhhCCCceEEecC
Q 045642 279 MANGGVIAPAGLHVLALAAKKHDVPFVVVAS 309 (406)
Q Consensus 279 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ae 309 (406)
+.=...++-.|+..+++|.++..
T Consensus 96 --------~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 96 --------EKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred --------HHHHHHHHHHHHHcCCeEEEcCC
Confidence 22235678899999999998754
No 204
>PRK14361 Maf-like protein; Provisional
Probab=50.40 E-value=85 Score=28.92 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=55.7
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEe---cCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhh-cCCEEEEcceeEe-eC
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFEGHILAKELDKKGLKAIVITDSAVFAMIS-RVNMVIVGVHAVM-AN 281 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~-~vd~VllGAdav~-~n 281 (406)
|.|..=.++|+.+ |-.|.|+.. |+.+...-..++..|+..+-. .+.. .-+.+|+|||.|. -|
T Consensus 5 S~SprR~elL~~~---g~~f~v~~~~~dE~~~~~~p~~~v~~lA~~Ka~----------~v~~~~~~~~vI~aDTvV~~~ 71 (187)
T PRK14361 5 SGSPRRRELLENL---GVPFQVVVSGEAEDSTETDPARLAAELALLKAR----------AVARLHPDAVVIAADTVVALG 71 (187)
T ss_pred cCCHHHHHHHHHC---CCCcEEECCCCCCCCCCCCHHHHHHHHHHHHHH----------HHHHhCCCCEEEEeCeEEEEC
Confidence 4455545555543 678887754 443322235777777765421 1111 2467999999965 78
Q ss_pred CCcccccchHHHH--HHHhhCCCceEEec
Q 045642 282 GGVIAPAGLHVLA--LAAKKHDVPFVVVA 308 (406)
Q Consensus 282 G~vvnk~GT~~lA--l~Ak~~~vPv~V~a 308 (406)
|.++.|-.+..-| ++....|.+.-|.+
T Consensus 72 g~ilgKP~~~eeA~~~L~~lsG~~h~V~T 100 (187)
T PRK14361 72 GVLLAKPADEAENEAFLRVLSGRTHQVYT 100 (187)
T ss_pred CEEecCCCCHHHHHHHHHHhCCCceEEEE
Confidence 9999999998777 45666666665543
No 205
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=50.28 E-value=1.7e+02 Score=29.19 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=48.6
Q ss_pred HHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHh-CCCceEEEcchHHHHHhhcC--
Q 045642 192 QAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDK-KGLKAIVITDSAVFAMISRV-- 268 (406)
Q Consensus 192 ~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~-~GI~vt~I~Dsav~~~m~~v-- 268 (406)
..++++...+.|++-|.+.....++....+.| =.|++ +.|.+.+...+..+.. .++.+..+....+-..+.+.
T Consensus 91 ~ia~~~g~~~~ii~~~~~~a~~~~~~~l~~~g--d~vi~--~~~~~~s~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~ 166 (393)
T TIGR01822 91 KIAAFLGTEDTILYASCFDANGGLFETLLGAE--DAIIS--DALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEARA 166 (393)
T ss_pred HHHHHhCCCcEEEECchHHHHHHHHHHhCCCC--CEEEE--eccccHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhhhh
Confidence 34456665566766555544444444433233 34555 3466665433333332 22222112112333334321
Q ss_pred ---CEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 269 ---NMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 269 ---d~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
...++-.+.+....|.+.. -..++-+|++|++++++
T Consensus 167 ~~~~~~~v~~~~v~~~tG~~~~--l~~i~~la~~~~~~li~ 205 (393)
T TIGR01822 167 AGARHRLIATDGVFSMDGVIAP--LDEICDLADKYDALVMV 205 (393)
T ss_pred cCCCceEEEEeCCccCCCCcCC--HHHHHHHHHHcCCEEEE
Confidence 2122222333222222222 24577789999987775
No 206
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=50.18 E-value=1.4e+02 Score=24.27 Aligned_cols=89 Identities=21% Similarity=0.223 Sum_probs=56.3
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEE-EecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEee
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVF-IADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMA 280 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~Vi-V~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~ 280 (406)
.|...|....-...+..+.+....+++. |++..|.. ..+...+.|++ ..+|-.-..--+++|.|++..-.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~----~~~~~~~~~~~--~~~~~~~ll~~~~~D~V~I~tp~--- 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPER----AEAFAEKYGIP--VYTDLEELLADEDVDAVIIATPP--- 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHH----HHHHHHHTTSE--EESSHHHHHHHTTESEEEEESSG---
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHH----HHHHHHHhccc--chhHHHHHHHhhcCCEEEEecCC---
Confidence 3566777666777777777666777765 66655431 11224567888 56663322223479999987543
Q ss_pred CCCcccccchHHHHHHHhhCCCceEE
Q 045642 281 NGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 281 nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
---+.++..|-.+|++|++
T Consensus 73 -------~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 73 -------SSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp -------GGHHHHHHHHHHTTSEEEE
T ss_pred -------cchHHHHHHHHHcCCEEEE
Confidence 2246677888889997775
No 207
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=50.13 E-value=1.5e+02 Score=24.56 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=50.2
Q ss_pred CCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc------hHH-HHHhh--cCCEEEEcceeEeeCCCc--ccccchH
Q 045642 223 KRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD------SAV-FAMIS--RVNMVIVGVHAVMANGGV--IAPAGLH 291 (406)
Q Consensus 223 ~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D------sav-~~~m~--~vd~VllGAdav~~nG~v--vnk~GT~ 291 (406)
...|+++.+++ +++.|.+.||+|+.+.. ..+ ..+.. ++|.||-=. +|.- -.....+
T Consensus 23 ~~G~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~-----~~~~~~~~~~dg~ 89 (112)
T cd00532 23 SDGFPLFATGG--------TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLR-----DPRRDRCTDEDGT 89 (112)
T ss_pred HCCCEEEECcH--------HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcC-----CCCcccccCCChH
Confidence 34688887742 68889999999987622 323 33334 588887643 3222 1355678
Q ss_pred HHHHHHhhCCCceEEecCC
Q 045642 292 VLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 292 ~lAl~Ak~~~vPv~V~aes 310 (406)
.+=-+|-.++||++--..+
T Consensus 90 ~iRR~A~~~~Ip~~T~~~t 108 (112)
T cd00532 90 ALLRLARLYKIPVTTPNAT 108 (112)
T ss_pred HHHHHHHHcCCCEEECHHH
Confidence 8888999999999865443
No 208
>PRK04425 Maf-like protein; Reviewed
Probab=49.27 E-value=1.3e+02 Score=27.92 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=60.0
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEe---cCCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcce
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFE-GHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVH 276 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAd 276 (406)
..|| -|.|..=.++|+.+ |-.|+|+.. |+....+ -..++..|+..+.. ++.. ..-+.+|+|||
T Consensus 6 ~iIL-AS~SprR~elL~~~---g~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~-------~v~~--~~~~~lvI~aD 72 (196)
T PRK04425 6 PLVL-GTSSVFRREQMERL---GIAFQAASPDFDETPMLGESAPQTALRLAEGKAR-------SLTG--RFPEALIVGAD 72 (196)
T ss_pred cEEE-eCCCHHHHHHHHHC---CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHh--hCCCCEEEEeC
Confidence 3455 35565555566554 578987754 3332223 36778888765521 1111 12467999999
Q ss_pred eEe-eCCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 277 AVM-ANGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 277 av~-~nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
.|. -||.++.|-.+..-| ++-+..|.+..|++.
T Consensus 73 TvV~~~g~ilgKP~~~eeA~~~L~~lsg~~h~v~T~ 108 (196)
T PRK04425 73 QVAWCDGRQWGKPMNLANAQKMLMHLSGREIEFYSA 108 (196)
T ss_pred eEEEECCEEecCCCCHHHHHHHHHHhCCCcEEEEEE
Confidence 965 788899999988766 566667777666543
No 209
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=49.05 E-value=84 Score=28.96 Aligned_cols=105 Identities=15% Similarity=0.115 Sum_probs=53.2
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc---h-HHHHH-------hhcC
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD---S-AVFAM-------ISRV 268 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D---s-av~~~-------m~~v 268 (406)
.+||..|.++.+=..|..... .+..+|+++..++. ....+...+...+.++..+ .| . ++..+ ...+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~-~~g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALA-AAGANVVVNDLGEA-GAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHH-HCCCEEEEEeCCHH-HHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 367777877666555544431 23357888765542 2345555566555444433 22 1 22222 2346
Q ss_pred CEEEEcceeEeeCCCc-------------ccccchHHHHHHH----hhCCCceEEec
Q 045642 269 NMVIVGVHAVMANGGV-------------IAPAGLHVLALAA----KKHDVPFVVVA 308 (406)
Q Consensus 269 d~VllGAdav~~nG~v-------------vnk~GT~~lAl~A----k~~~vPv~V~a 308 (406)
|.|+..|-.. ..+.. .|-.|+..++-++ +..+++.+|..
T Consensus 80 d~vi~~a~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ 135 (255)
T TIGR01963 80 DILVNNAGIQ-HVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINI 135 (255)
T ss_pred CEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 7777665321 11110 3566776666555 44555555444
No 210
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=48.99 E-value=2.9e+02 Score=27.73 Aligned_cols=114 Identities=22% Similarity=0.318 Sum_probs=62.4
Q ss_pred HHHHHHHHhccc---CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHH-HHHHHh----------CCCce
Q 045642 188 GIAEQAMELIHQ---NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHIL-AKELDK----------KGLKA 253 (406)
Q Consensus 188 ~I~~~a~~~I~~---g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~-a~~L~~----------~GI~v 253 (406)
.+++..+++... ..+++|.|.+..++.+++.+...|+ -+|+..+. .+.|... +..+.. .+.++
T Consensus 89 ~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~-~~ii~~~~--~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (398)
T PRK03244 89 ALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGR-TKIVAAEG--GFHGRTMGALALTGQPAKRAPFEPLPGGV 165 (398)
T ss_pred HHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCC-CeEEEECC--CcCCccHHHHhccCCcccccCCCCCCCCc
Confidence 344444454432 3678888999999999987776554 35666653 3444321 111111 12344
Q ss_pred EEEc--ch-HHHHHh-hcCCEEEEcceeEeeCCCccc-ccc-hHHHHHHHhhCCCceEE
Q 045642 254 IVIT--DS-AVFAMI-SRVNMVIVGVHAVMANGGVIA-PAG-LHVLALAAKKHDVPFVV 306 (406)
Q Consensus 254 t~I~--Ds-av~~~m-~~vd~VllGAdav~~nG~vvn-k~G-T~~lAl~Ak~~~vPv~V 306 (406)
..++ |- .+-..+ .++-.|++ +.+...+|.+- ..+ -..+.-+|++|++++++
T Consensus 166 ~~~~~~d~~~l~~~~~~~~~avii--ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~ 222 (398)
T PRK03244 166 EHVPYGDVDALAAAVDDDTAAVFL--EPIQGEAGVVPPPAGYLAAAREITDRHGALLVL 222 (398)
T ss_pred eEeCCCCHHHHHHhhcCCeEEEEE--ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4444 32 233333 33444554 44544444443 444 34567789999998876
No 211
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=48.79 E-value=1.5e+02 Score=30.55 Aligned_cols=96 Identities=15% Similarity=0.258 Sum_probs=53.2
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc---c-------hHHHHHhh
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT---D-------SAVFAMIS 266 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~---D-------sav~~~m~ 266 (406)
+...++++|.|.+..+..++....+.| -+|++. +|.+.....+..+ .|+.+..+. + ..+...+.
T Consensus 115 ~~~~~v~it~G~~~al~l~~~~l~~~G--d~Vlv~--~P~y~~y~~~~~~--~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 188 (430)
T PLN00145 115 LSTDDIYLTAGCAQAIEIIMSVLAQPG--ANILLP--RPGYPLYEARAVF--SGLEVRHFDLLPERGWEVDLEGVEALAD 188 (430)
T ss_pred CChhhEEEeCCHHHHHHHHHHHhcCCC--CEEEEc--CCCCccHHHHHHH--cCCEEEEeeCCcccCCcCCHHHHHHHhC
Confidence 445678999888888777776665333 345554 5776664433333 466665543 1 12322222
Q ss_pred -cCCEEEEcceeEeeCCCcccccch-------HHHHHHHhhCCCceEE
Q 045642 267 -RVNMVIVGVHAVMANGGVIAPAGL-------HVLALAAKKHDVPFVV 306 (406)
Q Consensus 267 -~vd~VllGAdav~~nG~vvnk~GT-------~~lAl~Ak~~~vPv~V 306 (406)
+..+++ +.|- -|.+|+ ..++-.|++++++|++
T Consensus 189 ~~~~~i~------i~~P--~NPtG~v~~~~~l~~i~~~a~~~~i~ii~ 228 (430)
T PLN00145 189 ENTVAMV------IINP--NNPCGSVYSYEHLAKIAETARKLGILVIA 228 (430)
T ss_pred cCceEEE------EeCC--CCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 222222 2222 266665 3456678999988775
No 212
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=48.76 E-value=68 Score=31.63 Aligned_cols=96 Identities=19% Similarity=0.131 Sum_probs=61.9
Q ss_pred EEeccChHHHHHHHHHHHHcCCceEEEEecCCCCc--chHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEee
Q 045642 203 ILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKF--EGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMA 280 (406)
Q Consensus 203 ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~--eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~ 280 (406)
||..|....+-..|..+.. ..+.|+.+..+... ....+.+-+.+.. -|.||=-|--.--
T Consensus 3 iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~Ditd~~~v~~~i~~~~-----------------PDvVIn~AAyt~v 63 (281)
T COG1091 3 ILITGANGQLGTELRRALP--GEFEVIATDRAELDITDPDAVLEVIRETR-----------------PDVVINAAAYTAV 63 (281)
T ss_pred EEEEcCCChHHHHHHHHhC--CCceEEeccCccccccChHHHHHHHHhhC-----------------CCEEEECcccccc
Confidence 7888888888888888873 56778777655521 1122223333221 2444433322221
Q ss_pred CC--------CcccccchHHHHHHHhhCCCceEEecCCccccccC
Q 045642 281 NG--------GVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLY 317 (406)
Q Consensus 281 nG--------~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~ 317 (406)
|+ -.+|-.|+..+|.+|++.|.|++-++--|=|+-..
T Consensus 64 D~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~ 108 (281)
T COG1091 64 DKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEK 108 (281)
T ss_pred ccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCC
Confidence 21 34889999999999999999999998888886533
No 213
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=48.76 E-value=2e+02 Score=29.28 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=51.4
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-HHHHHHHH-hCCCceEEEcc---hHHHHHh-hcCCEEEEc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-HILAKELD-KKGLKAIVITD---SAVFAMI-SRVNMVIVG 274 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~~~a~~L~-~~GI~vt~I~D---sav~~~m-~~vd~VllG 274 (406)
+.++|.|.+..+..++....+.| -+|++. .|.+.| ..+...+. ..|+++.++.. .++...+ ++...|++.
T Consensus 69 ~~i~~~sg~~Ai~~~l~~l~~~G--D~Vl~~--~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~ 144 (386)
T PRK08045 69 GAVLTNTGMSAIHLVTTVFLKPG--DLLVAP--HDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVE 144 (386)
T ss_pred eEEEECCHHHHHHHHHHHHcCCC--CEEEEc--CCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEE
Confidence 46777776666666665544333 345554 366766 44445544 34568877631 2232333 234444442
Q ss_pred ceeEeeCCCcccccch----HHHHHHHhhCCCceEE
Q 045642 275 VHAVMANGGVIAPAGL----HVLALAAKKHDVPFVV 306 (406)
Q Consensus 275 Adav~~nG~vvnk~GT----~~lAl~Ak~~~vPv~V 306 (406)
..-|..|+ ..++-+|+.++++|+|
T Consensus 145 --------sP~NPtG~v~di~~I~~ia~~~g~~viv 172 (386)
T PRK08045 145 --------SPSNPLLRVVDIAKICHLAREAGAVSVV 172 (386)
T ss_pred --------CCCCCCCEecCHHHHHHHHHHcCCEEEE
Confidence 23344443 3577788899987765
No 214
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.59 E-value=1.1e+02 Score=32.39 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=54.3
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcce
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVH 276 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAd 276 (406)
+..|..|+.+|...+=...++.+...| .+|++.|.+|.. ...|.+.|+.+....+ . ...+..+|.||...
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~~-----~~~l~~~g~~~~~~~~-~-~~~l~~~D~VV~Sp- 78 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPDA-----LRPHAERGVATVSTSD-A-VQQIADYALVVTSP- 78 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHHH-----HHHHHhCCCEEEcCcc-h-HhHhhcCCEEEECC-
Confidence 345778888776665555555555444 578889876531 2346777885543222 1 23356677777654
Q ss_pred eEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 277 AVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 277 av~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
|+-- ..+.-..|+..++||+-
T Consensus 79 ------Gi~~---~~p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 79 ------GFRP---TAPVLAAAAAAGVPIWG 99 (488)
T ss_pred ------CCCC---CCHHHHHHHHCCCcEee
Confidence 2211 34667778888888874
No 215
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=48.57 E-value=1.3e+02 Score=30.87 Aligned_cols=103 Identities=25% Similarity=0.346 Sum_probs=68.2
Q ss_pred cCcEEEeccC------hHHHHHHHHHHHHcCCceEEEE--------ecCCCCcc------h-----HHHHHHHHh---CC
Q 045642 199 QNEVILTLGH------SKFVKEFLCAAKEKKRSFEVFI--------ADGAPKFE------G-----HILAKELDK---KG 250 (406)
Q Consensus 199 ~g~~ILT~g~------S~tV~~~L~~A~~~~~~f~ViV--------~EsrP~~e------G-----~~~a~~L~~---~G 250 (406)
+|-+|.|||- | ...|..|+.+|.+.+|+. ++..|..+ | -.+|..+.+ .|
T Consensus 82 ~~vi~~TfGDmlRVPGs---~~SL~~ara~GadVriVYSpldAl~iA~~nP~k~vVF~avGFETTaP~~A~~i~~A~~~~ 158 (364)
T PRK15062 82 PGVILCTFGDMLRVPGS---KGSLLEAKAEGADVRIVYSPLDALKIARENPDKEVVFFAIGFETTAPATAATLLQAKAEG 158 (364)
T ss_pred CCeEEEeccccccCCCC---cCCHHHHHhCCCCEEEEeCHHHHHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcC
Confidence 4556777762 3 345777777777776664 23445432 2 223444433 56
Q ss_pred CceE------EEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 251 LKAI------VITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 251 I~vt------~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
++=- ..+-.++.+++..-+. ..|+++.-|.|..-+|+-.-.-+|++|++|++|.
T Consensus 159 ~~Nfsvl~~hkl~PPa~~~ll~~~~~---~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVa 218 (364)
T PRK15062 159 LKNFSVLSSHKLVPPAMRALLEDPEL---RIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVA 218 (364)
T ss_pred CCCEEEEEeccccHHHHHHHHcCCCC---CccEEEecCEeEEEeccchhHHHHHHcCCCeEEe
Confidence 5422 2344577777765432 6788888999999999999999999999999885
No 216
>PRK13566 anthranilate synthase; Provisional
Probab=48.43 E-value=85 Score=35.10 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=54.2
Q ss_pred CCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHh--hcCCEEEEc-ceeEeeCCCcccccchHHHHHHHhh
Q 045642 223 KRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMI--SRVNMVIVG-VHAVMANGGVIAPAGLHVLALAAKK 299 (406)
Q Consensus 223 ~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m--~~vd~VllG-Adav~~nG~vvnk~GT~~lAl~Ak~ 299 (406)
|+..+|.|++-...+ -..+++.|.+.|++|+++....-...+ .++|.||+. -- |+ ....+...+--.|..
T Consensus 524 ~~g~~IlvID~~dsf-~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGp-----gs-p~d~~~~~lI~~a~~ 596 (720)
T PRK13566 524 GEGKRVLLVDHEDSF-VHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGP-----GR-PSDFDCKATIDAALA 596 (720)
T ss_pred CCCCEEEEEECCCch-HHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCC-----CC-hhhCCcHHHHHHHHH
Confidence 456788888877544 358899999999999998764322222 356777762 11 11 223344555555667
Q ss_pred CCCceEEecCCccc
Q 045642 300 HDVPFVVVASTHEL 313 (406)
Q Consensus 300 ~~vPv~V~aes~K~ 313 (406)
.++||+-+|=-+.+
T Consensus 597 ~~iPILGIClG~Ql 610 (720)
T PRK13566 597 RNLPIFGVCLGLQA 610 (720)
T ss_pred CCCcEEEEehhHHH
Confidence 79999998855444
No 217
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=48.20 E-value=91 Score=31.44 Aligned_cols=108 Identities=14% Similarity=0.038 Sum_probs=59.6
Q ss_pred hcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc----hHHHHHhhcCCEE
Q 045642 196 LIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD----SAVFAMISRVNMV 271 (406)
Q Consensus 196 ~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D----sav~~~m~~vd~V 271 (406)
+...+.+||+.|.+..|=.-|.....+ +..+|+++.-++.. .+ .. ...++.. +..| ..+..++.++|.|
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~-~G~~V~~v~r~~~~---~~-~~-~~~~~~~-~~~Dl~d~~~~~~~~~~~D~V 89 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKA-EGHYIIASDWKKNE---HM-SE-DMFCHEF-HLVDLRVMENCLKVTKGVDHV 89 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHh-CCCEEEEEEecccc---cc-cc-ccccceE-EECCCCCHHHHHHHHhCCCEE
Confidence 455778899999877777666555422 34677777543211 00 00 0011221 2223 2344556788988
Q ss_pred EEcceeEe------eCC---CcccccchHHHHHHHhhCCCceEEecCC
Q 045642 272 IVGVHAVM------ANG---GVIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 272 llGAdav~------~nG---~vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
|--|-.+- .+- .-.|-.|+..++-+|+.+++.-+|.+.+
T Consensus 90 ih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 90 FNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred EEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 86553221 111 0135679999999999998755554443
No 218
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=48.08 E-value=1.4e+02 Score=25.75 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=30.6
Q ss_pred EEEeccChHHHHHHHHHHHHcC-CceEEEEecCCCCcchHHHHHHHHhC
Q 045642 202 VILTLGHSKFVKEFLCAAKEKK-RSFEVFIADGAPKFEGHILAKELDKK 249 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~-~~f~ViV~EsrP~~eG~~~a~~L~~~ 249 (406)
+|.||.....+.+.|....++. +.|+|+|++.....+....++.+...
T Consensus 3 vi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~ 51 (202)
T cd06433 3 ITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK 51 (202)
T ss_pred EEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh
Confidence 3556777777777777776543 45888888766555555555555443
No 219
>PRK04056 Maf-like protein; Reviewed
Probab=47.87 E-value=1.2e+02 Score=27.73 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=56.6
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEe---cCCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHhhcC--CEEEEcceeEe-
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFE-GHILAKELDKKGLKAIVITDSAVFAMISRV--NMVIVGVHAVM- 279 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m~~v--d~VllGAdav~- 279 (406)
|.|..=.++|+.+ |-+|+|+.. |+.+..+ -..++..|+..+- -.+..+. +.+++|||.|.
T Consensus 6 S~SprR~elL~~~---g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~Ka----------~~v~~~~~~~~~vI~aDTvV~ 72 (180)
T PRK04056 6 SSSSTRANLLKEA---GIEFEQKSLDFDEESIKKTSPKEFVYLAVKGKL----------EQFLKKYGNECNLLVADSVVS 72 (180)
T ss_pred CCCHHHHHHHHHC---CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHhCCCCCEEEEeCEEEE
Confidence 4454444455543 678988754 3433333 3577888876541 1222221 36999999965
Q ss_pred eCCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 280 ANGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 280 ~nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
-||.++.|-.+..-| ++-...|.+..|.+.
T Consensus 73 ~~g~ilgKP~~~~eA~~~L~~lsg~~h~V~T~ 104 (180)
T PRK04056 73 CGNKILRKAKDKEEAREMLKLQSGNEISVLTC 104 (180)
T ss_pred ECCEEecCCCCHHHHHHHHHHHCCCcEEEEEE
Confidence 788899999888766 466667777766543
No 220
>PRK06225 aspartate aminotransferase; Provisional
Probab=47.87 E-value=1.8e+02 Score=29.12 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=52.8
Q ss_pred ccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc-ch-------HHHHHhhcCC
Q 045642 198 HQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT-DS-------AVFAMISRVN 269 (406)
Q Consensus 198 ~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~-Ds-------av~~~m~~vd 269 (406)
....+++|.|.+..+..++......|. +|++.+ |.+... ...+...|..+..++ |. -...+-..++
T Consensus 82 ~~~~v~~~~g~t~al~~~~~~~~~~gd--~vl~~~--p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~ 155 (380)
T PRK06225 82 DDDEALITAGATESLYLVMRAFLSPGD--NAVTPD--PGYLII--DNFASRFGAEVIEVPIYSEECNYKLTPELVKENMD 155 (380)
T ss_pred CCCcEEEeCCHHHHHHHHHHHhcCCCC--EEEEcC--CCCcch--HHHHHHhCceEEeeccccccCCccCCHHHHHhhcC
Confidence 445688888888777777766553342 455544 555432 233456788777665 21 0112211111
Q ss_pred EEEEcceeEeeCCCcccccch-------HHHHHHHhhCCCceEEe
Q 045642 270 MVIVGVHAVMANGGVIAPAGL-------HVLALAAKKHDVPFVVV 307 (406)
Q Consensus 270 ~VllGAdav~~nG~vvnk~GT-------~~lAl~Ak~~~vPv~V~ 307 (406)
- ....|+-. ..-|..|. ..++-.|+++++++++=
T Consensus 156 ~---~~~~v~l~-~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~D 196 (380)
T PRK06225 156 E---NTRLIYLI-DPLNPLGSSYTEEEIKEFAEIARDNDAFLLHD 196 (380)
T ss_pred C---CceEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEe
Confidence 0 11222211 22455564 34667789999988863
No 221
>PRK02478 Maf-like protein; Reviewed
Probab=47.77 E-value=1.1e+02 Score=28.37 Aligned_cols=91 Identities=16% Similarity=0.096 Sum_probs=58.1
Q ss_pred ccChHHHHHHHHHHHHcCCceEEEEe---cCCC-------CcchHHHHHHHHhCCCceEEEcchHHHHHhhc-CCEEEEc
Q 045642 206 LGHSKFVKEFLCAAKEKKRSFEVFIA---DGAP-------KFEGHILAKELDKKGLKAIVITDSAVFAMISR-VNMVIVG 274 (406)
Q Consensus 206 ~g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP-------~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~-vd~VllG 274 (406)
-|.|..=.++|..+ |-.|.|+.. |+.. ......++..|++.+. -.+..+ -+.++||
T Consensus 8 AS~SprR~elL~~~---g~~f~v~~~~idE~~~~~~~~~~~~~p~~~v~~lA~~Ka----------~~v~~~~~~~ivI~ 74 (199)
T PRK02478 8 ASKSPFRRALLENA---GLEFSAAAADIDERAVEAPLEESGATPEDVALVLAEAKA----------IDVSERFPGALVIG 74 (199)
T ss_pred eCCCHHHHHHHHHC---CCCeEEecCCCCCCccccccccCCCCHHHHHHHHHHHHH----------HHHHHHCCCCEEEE
Confidence 35566656666654 578988854 4421 1224677888876541 111222 3679999
Q ss_pred ceeEe-eCCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 275 VHAVM-ANGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 275 Adav~-~nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
||.|. -||-++.|-.+..-| ++-+..|.+..|++.
T Consensus 75 aDTvV~~~g~ilgKP~~~~eA~~~L~~lsG~~h~V~T~ 112 (199)
T PRK02478 75 CDQTMSLGDEVFHKPKDMEEARRHLQKLSGKTHQLNSA 112 (199)
T ss_pred eCeEEEECCEEecCCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99965 788999999998776 466667776665443
No 222
>PRK04694 Maf-like protein; Reviewed
Probab=47.72 E-value=1e+02 Score=28.51 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=55.9
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEe---cCCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHhh--cCCEEEEcceeEe-
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFE-GHILAKELDKKGLKAIVITDSAVFAMIS--RVNMVIVGVHAVM- 279 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m~--~vd~VllGAdav~- 279 (406)
|.|..=.++|+.+ |-.|.|+.. |+.+..+ -..++..|+..+-. ++..-+. .-+.+|+|||.|.
T Consensus 6 S~SprR~elL~~~---g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~-------~v~~~~~~~~~~~lvI~aDTvv~ 75 (190)
T PRK04694 6 SRSPRRRELLQRL---DVPFQTLQLDVPEVRAADESPDHYVQRVALEKAH-------AGLALVQAADADAIVLGSDTEVV 75 (190)
T ss_pred CCCHHHHHHHHHC---CCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHHhhccCCCCEEEEeCeEEE
Confidence 4455555555554 567888753 4333333 25777777764421 1111111 2467999999976
Q ss_pred eCCCcccccchHHHH--HHHhhCCCceEEec
Q 045642 280 ANGGVIAPAGLHVLA--LAAKKHDVPFVVVA 308 (406)
Q Consensus 280 ~nG~vvnk~GT~~lA--l~Ak~~~vPv~V~a 308 (406)
-||.++.|-.+..-| ++-+..|....|.+
T Consensus 76 ~~g~ilgKP~~~~eA~~~L~~lsG~~h~V~T 106 (190)
T PRK04694 76 LGERVFGKPVDVDDAIAMLRALSGRTHQVLT 106 (190)
T ss_pred ECCEEecCCCCHHHHHHHHHHhCCCceEEEE
Confidence 699999999988766 46666666655544
No 223
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=47.60 E-value=1e+02 Score=28.13 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=43.0
Q ss_pred cCcEEEeccChHHHHHHHH-HHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc-ch----HHHHHh-------
Q 045642 199 QNEVILTLGHSKFVKEFLC-AAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT-DS----AVFAMI------- 265 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~-~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~-Ds----av~~~m------- 265 (406)
.+.+||..|.|+.+-..+. .+.++ ..+|+++-.++...-..+..++...+-.+.++. |- ++..++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQ--GANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEF 81 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3457777787766655544 44434 456777666655434456666766666655542 32 222222
Q ss_pred hcCCEEEEcce
Q 045642 266 SRVNMVIVGVH 276 (406)
Q Consensus 266 ~~vd~VllGAd 276 (406)
.++|.|+..|-
T Consensus 82 ~~id~vi~~ag 92 (248)
T PRK05557 82 GGVDILVNNAG 92 (248)
T ss_pred CCCCEEEECCC
Confidence 35788877763
No 224
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=47.52 E-value=84 Score=34.46 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=36.2
Q ss_pred ccChHHHHHHHHHHHHcCCceEEEE-ecCCCCcch-HHHHHHHHhCCCceEEE
Q 045642 206 LGHSKFVKEFLCAAKEKKRSFEVFI-ADGAPKFEG-HILAKELDKKGLKAIVI 256 (406)
Q Consensus 206 ~g~S~tV~~~L~~A~~~~~~f~ViV-~EsrP~~eG-~~~a~~L~~~GI~vt~I 256 (406)
.|.-|.+.+.|.+|+++||+.+|.| +-.|=.-|- ..-|+.|.++|+.|.|-
T Consensus 380 t~~dSpIV~ALi~AA~nGKqVtvlVELkARFDEE~NI~WAk~LE~AGvhVvyG 432 (696)
T COG0855 380 TSKDSPIVRALIDAAENGKQVTVLVELKARFDEEANIHWAKRLERAGVHVVYG 432 (696)
T ss_pred cCCCCHHHHHHHHHHHcCCeEEEEEEEhhhcChhhhhHHHHHHHhCCcEEEec
Confidence 3554555566666666999988776 445555554 57899999999998864
No 225
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=47.50 E-value=59 Score=32.62 Aligned_cols=102 Identities=12% Similarity=0.136 Sum_probs=62.6
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHH-hCCCceEEEcchHHHHHhhcCCEEEEcc--e
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELD-KKGLKAIVITDSAVFAMISRVNMVIVGV--H 276 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~-~~GI~vt~I~Dsav~~~m~~vd~VllGA--d 276 (406)
-|..+.+=....+...+.+|.+.|.+.-|+++|.-|...+..+.+.+. +.|+ .+|=-+..+.+-+... .+|. .
T Consensus 89 ~D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~--rliGPNc~Gii~p~~~--~~gi~p~ 164 (317)
T PTZ00187 89 ADASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKT--RLIGPNCPGIIKPGEC--KIGIMPG 164 (317)
T ss_pred CCEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCC--EEECCCCceEEcchhh--ccccCCc
Confidence 366666667888899999999899999999999999888776665444 2454 3333333332222211 1121 1
Q ss_pred eEeeCC--CcccccchHHHHHH--HhhCCCceE
Q 045642 277 AVMANG--GVIAPAGLHVLALA--AKKHDVPFV 305 (406)
Q Consensus 277 av~~nG--~vvnk~GT~~lAl~--Ak~~~vPv~ 305 (406)
.++.-| +++++.||+...++ +...++-+-
T Consensus 165 ~~~~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S 197 (317)
T PTZ00187 165 HIHKKGKIGIVSRSGTLTYEAVAQTTAVGLGQS 197 (317)
T ss_pred CCCCCCCEEEEeCCHHHHHHHHHHHHHcCCCEE
Confidence 123345 67899997666554 555555443
No 226
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=47.38 E-value=1.5e+02 Score=29.34 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=59.3
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc-c----hHHHHHhhcCCEEEE
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT-D----SAVFAMISRVNMVIV 273 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~-D----sav~~~m~~vd~Vll 273 (406)
.+.+||+.|.++.+=..|..... .+..+|+++...+. ....+...+.. +-.++++. | ..+..++.++|.||-
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~-~~G~~V~~~~r~~~-~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLL-QRGYTVHATLRDPA-KSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCChH-HHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 46688888888777665555442 23467887644332 22223333332 33344432 2 345566778888887
Q ss_pred cceeEeeCC-----Cc-----cc-----ccchHHHHHHHhhCC-CceEEecCC
Q 045642 274 GVHAVMANG-----GV-----IA-----PAGLHVLALAAKKHD-VPFVVVAST 310 (406)
Q Consensus 274 GAdav~~nG-----~v-----vn-----k~GT~~lAl~Ak~~~-vPv~V~aes 310 (406)
-|-..-.+. .. .| -.||..+.-+|+.++ +.-+|...|
T Consensus 86 ~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS 138 (353)
T PLN02896 86 VAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSS 138 (353)
T ss_pred CCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEec
Confidence 664321110 00 12 268888888887764 655555444
No 227
>PLN02509 cystathionine beta-lyase
Probab=47.24 E-value=2.3e+02 Score=29.89 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=49.5
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH-HHH-HHHHhCCCceEEEcchHHHHH---hhcCCEEEEcc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH-ILA-KELDKKGLKAIVITDSAVFAM---ISRVNMVIVGV 275 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~-~~a-~~L~~~GI~vt~I~Dsav~~~---m~~vd~VllGA 275 (406)
..|++-|....+ ..+..+.+.|. +|++ +.|.+.|. .+. ..+...|+.+..+.....-.+ +..=+++|+-.
T Consensus 150 ~ai~~~SG~aAi-~~il~ll~~GD--~VI~--~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~le 224 (464)
T PLN02509 150 RAFCFTSGMAAL-SAVTHLIKNGE--EIVA--GDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWLE 224 (464)
T ss_pred EEEEeCcHHHHH-HHHHHHhCCCC--EEEE--cCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEEE
Confidence 345554444444 33334443443 5555 55666663 333 456778999888743322222 22112222211
Q ss_pred eeEeeCCCcccccchH----HHHHHHhhCCCceEE
Q 045642 276 HAVMANGGVIAPAGLH----VLALAAKKHDVPFVV 306 (406)
Q Consensus 276 dav~~nG~vvnk~GT~----~lAl~Ak~~~vPv~V 306 (406)
+..|..|.. .++-+|+.++++++|
T Consensus 225 -------sPsNPtG~i~Dl~~I~~lAk~~g~~lIV 252 (464)
T PLN02509 225 -------SPTNPRQQISDIRKIAEMAHAQGALVLV 252 (464)
T ss_pred -------CCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 344555554 366678999999886
No 228
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=46.91 E-value=1.5e+02 Score=29.80 Aligned_cols=53 Identities=23% Similarity=0.198 Sum_probs=36.0
Q ss_pred cEEEe---ccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc
Q 045642 201 EVILT---LGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT 257 (406)
Q Consensus 201 ~~ILT---~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~ 257 (406)
|.|.. ||+|..+...++...+.-..+.|++=+-. ....|+.|.+.|++...+.
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~----t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVG----TPEAVRELENAGADATKVG 165 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCC----CHHHHHHHHHcCcCEEEEC
Confidence 54443 89999999999998854444444443321 4577889998887766654
No 229
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=46.88 E-value=2.7e+02 Score=28.10 Aligned_cols=100 Identities=22% Similarity=0.286 Sum_probs=52.1
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch---------HHHHHhh----
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS---------AVFAMIS---- 266 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds---------av~~~m~---- 266 (406)
..+++|-|.+..+..++......| -+|++. .|.+.+... .+...|+++..++.. .+...+.
T Consensus 92 ~~i~it~G~~~al~~~~~~~~~~g--d~vl~~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 165 (391)
T PRK07309 92 NEILVTIGATEALSASLTAILEPG--DKVLLP--APAYPGYEP--IVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQGD 165 (391)
T ss_pred CcEEEeCChHHHHHHHHHHhcCCC--CEEEEe--CCCCcchHH--HHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccCC
Confidence 467888887777766666554333 245554 377766432 334468887777532 1111222
Q ss_pred cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 267 RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
++..|++- .---+.|.+++..--..++-.|++|++++++
T Consensus 166 ~~~~i~l~-~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK07309 166 KLKAVILN-YPANPTGVTYSREQIKALADVLKKYDIFVIS 204 (391)
T ss_pred CeEEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 23333331 0000113333322234567778899988886
No 230
>PRK07683 aminotransferase A; Validated
Probab=46.87 E-value=2.4e+02 Score=28.42 Aligned_cols=93 Identities=23% Similarity=0.295 Sum_probs=51.7
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch---------HHHHHhhcCCEE
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS---------AVFAMISRVNMV 271 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds---------av~~~m~~vd~V 271 (406)
++++|.|.+..+..++....+.|. +|++ ..|.+.+...+ +...|.++.+++.. .+...+..-+++
T Consensus 91 ~I~~t~G~~~al~~~~~~l~~~gd--~Vl~--~~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (387)
T PRK07683 91 EIIVTIGASEAIDIAFRTILEPGT--EVIL--PAPIYPGYEPI--IRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRC 164 (387)
T ss_pred cEEEeCChHHHHHHHHHHhCCCCC--EEEE--cCCCccchHHH--HHHcCCEEEEeecCcccCCCCHHHHHHhcCcCceE
Confidence 688888877776666655543342 4444 36666664333 23468888877532 122222222233
Q ss_pred EEcceeEeeCCCcccccch-------HHHHHHHhhCCCceEE
Q 045642 272 IVGVHAVMANGGVIAPAGL-------HVLALAAKKHDVPFVV 306 (406)
Q Consensus 272 llGAdav~~nG~vvnk~GT-------~~lAl~Ak~~~vPv~V 306 (406)
++ +. ..-|..|+ ..++-.|+++++++++
T Consensus 165 i~-----i~--~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 199 (387)
T PRK07683 165 VV-----LP--YPSNPTGVTLSKEELQDIADVLKDKNIFVLS 199 (387)
T ss_pred EE-----Ee--CCCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 22 11 23456666 4567788889987664
No 231
>PRK06108 aspartate aminotransferase; Provisional
Probab=46.87 E-value=2.3e+02 Score=28.05 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=51.8
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch-----------HHHHHh
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS-----------AVFAMI 265 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds-----------av~~~m 265 (406)
+....+++|.|.+..+..++....+.| -+|++. .|.+.+.. ..+...|+++..++-. .+...+
T Consensus 82 ~~~~~i~~t~g~~~al~~~~~~l~~~g--d~vl~~--~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~ 155 (382)
T PRK06108 82 TPPERIAVTSSGVQALMLAAQALVGPG--DEVVAV--TPLWPNLV--AAPKILGARVVCVPLDFGGGGWTLDLDRLLAAI 155 (382)
T ss_pred cCcceEEEeCChHHHHHHHHHHhcCCC--CEEEEe--CCCccchH--HHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhc
Confidence 344567788887776666666554333 345553 45554432 2345578887776431 222222
Q ss_pred h-cCCEEEEcceeEeeCCCcccccchH-------HHHHHHhhCCCceEE
Q 045642 266 S-RVNMVIVGVHAVMANGGVIAPAGLH-------VLALAAKKHDVPFVV 306 (406)
Q Consensus 266 ~-~vd~VllGAdav~~nG~vvnk~GT~-------~lAl~Ak~~~vPv~V 306 (406)
. ++..+++ + ..-|..|+. .++-.|+++++.+++
T Consensus 156 ~~~~~~i~l-------~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 196 (382)
T PRK06108 156 TPRTRALFI-------N-SPNNPTGWTASRDDLRAILAHCRRHGLWIVA 196 (382)
T ss_pred CccceEEEE-------E-CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 2 2222332 2 234677753 366678888887764
No 232
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=46.82 E-value=82 Score=31.29 Aligned_cols=110 Identities=16% Similarity=0.048 Sum_probs=60.6
Q ss_pred ccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHh---CCC-ceEEE----cc-hHHHHHhhcC
Q 045642 198 HQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDK---KGL-KAIVI----TD-SAVFAMISRV 268 (406)
Q Consensus 198 ~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~---~GI-~vt~I----~D-sav~~~m~~v 268 (406)
-.+..||+.|.+..+=.-|..... .+..+|++++..+......+...... ..+ .+.++ .| ..+..+++.+
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~-~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELL-FLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHH-HCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 345678888887766655544432 23467888876553222222211111 100 12222 23 3556677889
Q ss_pred CEEEEcceeEee---CC-----CcccccchHHHHHHHhhCCCc-eEEec
Q 045642 269 NMVIVGVHAVMA---NG-----GVIAPAGLHVLALAAKKHDVP-FVVVA 308 (406)
Q Consensus 269 d~VllGAdav~~---nG-----~vvnk~GT~~lAl~Ak~~~vP-v~V~a 308 (406)
|.||=-|-.... .. .-.|-.||..+.-+|++++++ |+.++
T Consensus 92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 988876642211 11 125678999999999999875 55443
No 233
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=46.67 E-value=2.2e+02 Score=29.05 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=49.9
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH-HHH-HHHHhCCCceEEEcch---HHHHHhhcCCEEEEcce
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH-ILA-KELDKKGLKAIVITDS---AVFAMISRVNMVIVGVH 276 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~-~~a-~~L~~~GI~vt~I~Ds---av~~~m~~vd~VllGAd 276 (406)
.+++.+.+..+...|....+.|. +|++. .|.+.|. .+. ..+...|++++.+... .+...+..=+++|+-..
T Consensus 83 ~~~~~sG~~Ai~~~l~~~l~~Gd--~Vl~~--~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~les 158 (398)
T PRK07504 83 ARATASGMAAVTAAILCQVKAGD--HVVAA--RALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFLES 158 (398)
T ss_pred eeEecCHHHHHHHHHHHHhCCCC--EEEEc--CCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEEC
Confidence 44455555555444544443343 55654 4666663 222 3345679998887532 23333322223333222
Q ss_pred eEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 277 AVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 277 av~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
-.-..|.+.. -..++-+|++++++++|
T Consensus 159 p~NptG~v~d---l~~I~~la~~~gi~lvv 185 (398)
T PRK07504 159 PTNPTLEVID---IAAVAKIANQAGAKLVV 185 (398)
T ss_pred CCCCCcEecC---HHHHHHHHHHcCCEEEE
Confidence 2222233332 35677788999988776
No 234
>PRK08912 hypothetical protein; Provisional
Probab=46.60 E-value=3e+02 Score=27.50 Aligned_cols=92 Identities=25% Similarity=0.335 Sum_probs=50.7
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc---------hHHHHHh-hcCCE
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD---------SAVFAMI-SRVNM 270 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D---------sav~~~m-~~vd~ 270 (406)
++++|.|.+..+..++....+.| -+|++.+ |.+.+... .+...|+++..++- ..+...+ +++..
T Consensus 89 ~i~~t~G~~~al~~~~~~~~~~g--d~Vlv~~--p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (387)
T PRK08912 89 EVMVTSGATEALAAALLALVEPG--DEVVLFQ--PLYDAYLP--LIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKA 162 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCC--CEEEEeC--CCchhhHH--HHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceE
Confidence 68899988887766666554333 3455543 66655332 33566777665532 1121222 23333
Q ss_pred EEEcceeEeeCCCcccccchH-------HHHHHHhhCCCceEE
Q 045642 271 VIVGVHAVMANGGVIAPAGLH-------VLALAAKKHDVPFVV 306 (406)
Q Consensus 271 VllGAdav~~nG~vvnk~GT~-------~lAl~Ak~~~vPv~V 306 (406)
|++ + ..-|.+|+. .++-.|+.+++.+++
T Consensus 163 v~l-------~-~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~ 197 (387)
T PRK08912 163 VLL-------N-NPLNPAGKVFPREELALLAEFCQRHDAVAIC 197 (387)
T ss_pred EEE-------e-CCCCCcCcccCHHHHHHHHHHHHHCCeEEEE
Confidence 332 2 345677764 256678888876553
No 235
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.55 E-value=87 Score=28.89 Aligned_cols=98 Identities=16% Similarity=0.238 Sum_probs=52.9
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc----hHHHHHhh-------c
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD----SAVFAMIS-------R 267 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D----sav~~~m~-------~ 267 (406)
|.++|+.|.++.+=..+..... .+..+|+++-.|.......+++.+...|-.+.++ .| ..+..++. +
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~-~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLA-EEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR 82 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4577777777666555544331 2345666655565555566777777766554443 44 23333333 3
Q ss_pred CCEEEEcceeEeeCCCc-------------ccccchHHHHHHHhh
Q 045642 268 VNMVIVGVHAVMANGGV-------------IAPAGLHVLALAAKK 299 (406)
Q Consensus 268 vd~VllGAdav~~nG~v-------------vnk~GT~~lAl~Ak~ 299 (406)
+|.||-.|-. ...+.. +|..|+..++-++..
T Consensus 83 id~vi~~ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 126 (250)
T PRK08063 83 LDVFVNNAAS-GVLRPAMELEESHWDWTMNINAKALLFCAQEAAK 126 (250)
T ss_pred CCEEEECCCC-CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5666654421 111111 566788887766654
No 236
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=46.45 E-value=27 Score=28.05 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCce----EEEcch---H----HHHHhh--cCCEEEEcceeEee
Q 045642 214 EFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKA----IVITDS---A----VFAMIS--RVNMVIVGVHAVMA 280 (406)
Q Consensus 214 ~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~v----t~I~Ds---a----v~~~m~--~vd~VllGAdav~~ 280 (406)
.+.+...+.| |++|-++ -+|+.|.+.||+| .++... . +..+|+ ++|+||.=.+.
T Consensus 4 ~~a~~l~~lG--~~i~AT~--------gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~--- 70 (95)
T PF02142_consen 4 PLAKRLAELG--FEIYATE--------GTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYP--- 70 (95)
T ss_dssp HHHHHHHHTT--SEEEEEH--------HHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--T---
T ss_pred HHHHHHHHCC--CEEEECh--------HHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCC---
Confidence 3444444444 7888774 3689999999993 344433 1 555565 48877764322
Q ss_pred CCCcccc-cchHHHHHHHhhCCCceE
Q 045642 281 NGGVIAP-AGLHVLALAAKKHDVPFV 305 (406)
Q Consensus 281 nG~vvnk-~GT~~lAl~Ak~~~vPv~ 305 (406)
.--.. ...+.+--+|-.++||.+
T Consensus 71 --~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 71 --FSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp --HHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred --CcccccCCcHHHHHHHHHcCCCCc
Confidence 22222 377889999999999975
No 237
>PRK00148 Maf-like protein; Reviewed
Probab=46.19 E-value=1.1e+02 Score=28.40 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=56.3
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEe---cCCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHhh-cCCEEEEcceeEe-e
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFE-GHILAKELDKKGLKAIVITDSAVFAMIS-RVNMVIVGVHAVM-A 280 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m~-~vd~VllGAdav~-~ 280 (406)
|.|..=..+|..+ |-.|+++-. |+.+..+ -..++..|+..+ +..+.+ .-+.+|+|||.|. -
T Consensus 7 S~SprR~elL~~~---g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~K----------A~~v~~~~~~~~vI~aDTvV~~ 73 (194)
T PRK00148 7 SASPARLKLLRLA---GIPPLVVVSHVDEDAIAASSPSELVQALARAK----------AEAVAENAPDAVVLGCDSMLLI 73 (194)
T ss_pred CCCHHHHHHHHHC---CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhCCCCEEEEeCcEEEE
Confidence 5555555555443 578887744 3333333 256777777644 112222 2467999999965 5
Q ss_pred CCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 281 NGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 281 nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
||-++.|-.+..=| ++-+..|.+..|.+.
T Consensus 74 ~g~Il~KP~~~eeA~~~L~~lsG~~h~v~T~ 104 (194)
T PRK00148 74 DGRLLGKPHTPEEAIERWQQMSGRTGELYTG 104 (194)
T ss_pred CCEEecCCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 99999999988766 466666776666543
No 238
>PRK07550 hypothetical protein; Provisional
Probab=46.07 E-value=2.6e+02 Score=27.99 Aligned_cols=102 Identities=22% Similarity=0.292 Sum_probs=51.1
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch---H-------HHHHhh
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS---A-------VFAMIS 266 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds---a-------v~~~m~ 266 (406)
+....+++|.|.+..+..++....+.| -+|++. + |.+-+... .+...|+++..++-. . +-..+.
T Consensus 88 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vlv~-~-p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~ 161 (386)
T PRK07550 88 ISPEQVHITSGCNQAFWAAMVTLAGAG--DEVILP-L-PWYFNHKM--WLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT 161 (386)
T ss_pred CCcceEEEecCcHHHHHHHHHHhcCCC--CEEEEc-C-CCCcchHH--HHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc
Confidence 445567888877666655555544333 344443 3 76655432 335678877665421 1 222222
Q ss_pred -cCCEEEEc-ceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 267 -RVNMVIVG-VHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 267 -~vd~VllG-Adav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+...|++- .+ -+.|.++..-=-..++-.|+++++++++
T Consensus 162 ~~~~~v~~~~P~--NPtG~~~~~~~~~~i~~~~~~~~~~iI~ 201 (386)
T PRK07550 162 PRTRAIALVTPN--NPTGVVYPPELLHELYDLARRHGIALIL 201 (386)
T ss_pred ccCcEEEEeCCC--CCCCcccCHHHHHHHHHHHHHcCeEEEE
Confidence 23333321 11 1123333322234577788999987765
No 239
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=45.90 E-value=97 Score=24.35 Aligned_cols=75 Identities=19% Similarity=0.449 Sum_probs=43.4
Q ss_pred EEEecCCCCcchHHHHHHHHhCCC-ceEEEcchHH-HHHhhc--CCEEEEcceeEeeCCCcccccchHHHHHHHhhC-CC
Q 045642 228 VFIADGAPKFEGHILAKELDKKGL-KAIVITDSAV-FAMISR--VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKH-DV 302 (406)
Q Consensus 228 ViV~EsrP~~eG~~~a~~L~~~GI-~vt~I~Dsav-~~~m~~--vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~-~v 302 (406)
|.|+|..|... ..+.+.|...|+ .|+...+..- ...+.+ .|.+++. ...-...|-..+..+.+.. ++
T Consensus 1 Ilivd~~~~~~-~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid-------~~~~~~~~~~~~~~i~~~~~~~ 72 (112)
T PF00072_consen 1 ILIVDDDPEIR-ELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIID-------LELPDGDGLELLEQIRQINPSI 72 (112)
T ss_dssp EEEEESSHHHH-HHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEE-------SSSSSSBHHHHHHHHHHHTTTS
T ss_pred cEEEECCHHHH-HHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEE-------eeeccccccccccccccccccc
Confidence 34555554322 244555667787 7776666433 233333 5555555 4444556666666665554 89
Q ss_pred ceEEecCC
Q 045642 303 PFVVVAST 310 (406)
Q Consensus 303 Pv~V~aes 310 (406)
|+++++..
T Consensus 73 ~ii~~t~~ 80 (112)
T PF00072_consen 73 PIIVVTDE 80 (112)
T ss_dssp EEEEEESS
T ss_pred cEEEecCC
Confidence 99999854
No 240
>PRK00032 Maf-like protein; Reviewed
Probab=45.84 E-value=1.1e+02 Score=28.28 Aligned_cols=90 Identities=16% Similarity=0.198 Sum_probs=56.5
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEe---cCCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHhhc--CCEEEEcceeEe-
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFE-GHILAKELDKKGLKAIVITDSAVFAMISR--VNMVIVGVHAVM- 279 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m~~--vd~VllGAdav~- 279 (406)
|.|..=.++|..+ |-.|+|+.. |+....+ -..++..|++.+ +..+..+ -+.+|+|||.|.
T Consensus 8 S~SprR~elL~~~---g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~K----------A~~v~~~~~~~~~vI~aDTvV~ 74 (190)
T PRK00032 8 SGSPRRRELLTQL---GVPFEVLVPGIEEQRQPGESAQQYVERLARDK----------AQAGVALAPQDLPVLGADTIVV 74 (190)
T ss_pred CCCHHHHHHHHHC---CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhcCCCCEEEEeCeEEE
Confidence 5555555565544 578987754 3322222 356777777644 1122222 367999999965
Q ss_pred eCCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 280 ANGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 280 ~nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
-||.++.|-.+..-| ++-+..|.+..|.+.
T Consensus 75 ~~g~IlgKP~~~eeA~~~L~~lsG~~h~v~T~ 106 (190)
T PRK00032 75 LDGEVLEKPRDAADAAAMLRALSGRTHQVMTA 106 (190)
T ss_pred ECCEEecCCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 789999999998777 456666776665543
No 241
>PRK07505 hypothetical protein; Provisional
Probab=45.15 E-value=3.4e+02 Score=27.41 Aligned_cols=113 Identities=15% Similarity=0.078 Sum_probs=60.4
Q ss_pred HHHHHHHHhcccCcEEEeccChHHHHHHHHHHHH---cCCceEEEEecCCCCcchH-HHHHHHHhCCCceEEEc--ch-H
Q 045642 188 GIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKE---KKRSFEVFIADGAPKFEGH-ILAKELDKKGLKAIVIT--DS-A 260 (406)
Q Consensus 188 ~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~---~~~~f~ViV~EsrP~~eG~-~~a~~L~~~GI~vt~I~--Ds-a 260 (406)
...+..++++.. +.+++.+.+..++.+|+.+.. .+.+-+|++.+. .+.|- .....+...+.++..++ |- .
T Consensus 95 ~l~~~la~~~~~-~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~--~~H~s~~~~~~~~~~~~~v~~~~~~d~~~ 171 (402)
T PRK07505 95 DLEEALSELFGA-SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDK--NAHASLNILKGICADETEVETIDHNDLDA 171 (402)
T ss_pred HHHHHHHHHhCC-CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEch--hhhHhHHhhhhhhhcCCeEEEeCCCCHHH
Confidence 344444455544 777677777788777766542 112334555543 22231 11123333455666654 32 2
Q ss_pred HHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 261 VFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 261 v~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+...+..-++.++=++.+.+.|++.. -..+.-+|+++++.+++
T Consensus 172 l~~~~~~~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~ 214 (402)
T PRK07505 172 LEDICKTNKTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYI 214 (402)
T ss_pred HHHHHhcCCCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEE
Confidence 33334322344444567777777766 35667788899876654
No 242
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=45.05 E-value=1.2e+02 Score=28.14 Aligned_cols=75 Identities=17% Similarity=0.387 Sum_probs=43.4
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEe-cCCCCcchHHHHHHHHhCCCceEEEc----------chHHHHHhh--cC
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIA-DGAPKFEGHILAKELDKKGLKAIVIT----------DSAVFAMIS--RV 268 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~-EsrP~~eG~~~a~~L~~~GI~vt~I~----------Dsav~~~m~--~v 268 (406)
.||.-|.++....++....+.+....|.++ -.+|...+ .....+.||++..+. |..+...++ ++
T Consensus 5 ~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~---~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (200)
T PRK05647 5 VVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYG---LERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQP 81 (200)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCccchH---HHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCc
Confidence 466667777777777776644445565543 33344443 344567899998865 233334443 47
Q ss_pred CEEEE-cceeEe
Q 045642 269 NMVIV-GVHAVM 279 (406)
Q Consensus 269 d~Vll-GAdav~ 279 (406)
|.+++ |-..++
T Consensus 82 D~iv~~~~~~ii 93 (200)
T PRK05647 82 DLVVLAGFMRIL 93 (200)
T ss_pred CEEEhHHhhhhC
Confidence 87766 333444
No 243
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=44.96 E-value=1.4e+02 Score=29.74 Aligned_cols=107 Identities=16% Similarity=0.089 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc--ch-HHHH
Q 045642 187 EGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT--DS-AVFA 263 (406)
Q Consensus 187 ~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~--Ds-av~~ 263 (406)
+.+.+..++++...+.|++.+.+.....++....+.| =.|++. .|.+.+...+-. ..|.++..++ |- .+..
T Consensus 90 ~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l~~~g--d~vi~~--~~~~~~~~~~~~--~~~~~~~~~~~~d~~~l~~ 163 (397)
T PRK06939 90 KELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKE--DAIISD--ALNHASIIDGVR--LCKAKRYRYANNDMADLEA 163 (397)
T ss_pred HHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHhCCCC--CEEEEE--hhhhHHHHHHHH--hcCCceEEeCCCCHHHHHH
Confidence 4444555555543455555554666666665554333 345553 355555433333 3455555543 32 2222
Q ss_pred Hhhc------CCEEEEcceeEeeCCCcccccch----HHHHHHHhhCCCceEE
Q 045642 264 MISR------VNMVIVGVHAVMANGGVIAPAGL----HVLALAAKKHDVPFVV 306 (406)
Q Consensus 264 ~m~~------vd~VllGAdav~~nG~vvnk~GT----~~lAl~Ak~~~vPv~V 306 (406)
.++. -.++|+ -|.+.|..|+ ..++-.|+++++++++
T Consensus 164 ~i~~~~~~~~~~~~v~-------~~~v~~~~G~~~~~~~l~~la~~~~~~li~ 209 (397)
T PRK06939 164 QLKEAKEAGARHKLIA-------TDGVFSMDGDIAPLPEICDLADKYDALVMV 209 (397)
T ss_pred HHHhhhccCCCCeEEE-------EecCcCCCCCcCCHHHHHHHHHHhCCEEEE
Confidence 3321 122333 2344455554 3566778999998864
No 244
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=44.96 E-value=50 Score=27.96 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=58.1
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEE-EecCCC-CcchHHHHHHHH--hCCCceEEEcchHHHHHhhcCCEEEEccee
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVF-IADGAP-KFEGHILAKELD--KKGLKAIVITDSAVFAMISRVNMVIVGVHA 277 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~Vi-V~EsrP-~~eG~~~a~~L~--~~GI~vt~I~Dsav~~~m~~vd~VllGAda 277 (406)
.|..+|++.-+=+.+.++..+...+++. +++.++ ...|+....-+. ..|++++ .....++.++|.+|--
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~----~~l~~~~~~~DVvIDf--- 74 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT----DDLEELLEEADVVIDF--- 74 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB----S-HHHHTTH-SEEEEE---
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc----hhHHHhcccCCEEEEc---
Confidence 4778899777777777777666778844 667776 456654443322 3444444 3345566667755532
Q ss_pred EeeCCCcccccchHHHHHHHhhCCCceEEecCC
Q 045642 278 VMANGGVIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 278 v~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
-+.-++...+-.|.++++|+++.+--
T Consensus 75 -------T~p~~~~~~~~~~~~~g~~~ViGTTG 100 (124)
T PF01113_consen 75 -------TNPDAVYDNLEYALKHGVPLVIGTTG 100 (124)
T ss_dssp -------S-HHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred -------CChHHhHHHHHHHHhCCCCEEEECCC
Confidence 25667777888888889999987643
No 245
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=44.95 E-value=2.5e+02 Score=28.27 Aligned_cols=96 Identities=17% Similarity=0.297 Sum_probs=51.4
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc-c---------hHHHHHhh
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT-D---------SAVFAMIS 266 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~-D---------sav~~~m~ 266 (406)
+....+++|.|.+..+..++....+.| -+|++. .|.+... ...+...|+.+..++ | ..+-..+.
T Consensus 93 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~v~i~--~P~y~~~--~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~ 166 (401)
T TIGR01264 93 IEADDVVLCSGCSHAIEMCIAALANAG--QNILVP--RPGFPLY--ETLAESMGIEVKLYNLLPDKSWEIDLKQLESLID 166 (401)
T ss_pred CCHHHEEECcChHHHHHHHHHHhCCCC--CEEEEe--CCCChhH--HHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc
Confidence 334457777777776666665554333 345554 4665543 233456788776653 1 11222222
Q ss_pred -cCCEEEEcceeEeeCCCcccccchH-------HHHHHHhhCCCceEE
Q 045642 267 -RVNMVIVGVHAVMANGGVIAPAGLH-------VLALAAKKHDVPFVV 306 (406)
Q Consensus 267 -~vd~VllGAdav~~nG~vvnk~GT~-------~lAl~Ak~~~vPv~V 306 (406)
+...|++. .--|..|+. .++-.|+++++++++
T Consensus 167 ~~~~~v~~~--------~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 167 EKTAALIVN--------NPSNPCGSVFSRQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred cCceEEEEc--------CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 33333331 234667754 466677888887764
No 246
>PRK08361 aspartate aminotransferase; Provisional
Probab=44.93 E-value=2.9e+02 Score=27.79 Aligned_cols=55 Identities=25% Similarity=0.266 Sum_probs=31.5
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT 257 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~ 257 (406)
+....+++|.|.+..+..++....+.| -+|++.+ |.+.+.. ..+...|+++..++
T Consensus 91 ~~~~~i~~t~G~~~al~~~~~~l~~~g--~~Vlv~~--p~y~~~~--~~~~~~g~~~~~v~ 145 (391)
T PRK08361 91 VDVDNVIVTAGAYEATYLAFESLLEEG--DEVIIPD--PAFVCYV--EDAKIAEAKPIRIP 145 (391)
T ss_pred CCcccEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCcccH--HHHHHcCCEEEEEe
Confidence 445567888877766666665554333 3555553 6655532 33344677776653
No 247
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=44.69 E-value=1.9e+02 Score=30.89 Aligned_cols=123 Identities=13% Similarity=0.163 Sum_probs=67.1
Q ss_pred HHHHHHhcccCcEEEeccC--hHHHHHHHHHHHHc-------C--CceEEEEecCC-C------Ccch----------HH
Q 045642 190 AEQAMELIHQNEVILTLGH--SKFVKEFLCAAKEK-------K--RSFEVFIADGA-P------KFEG----------HI 241 (406)
Q Consensus 190 ~~~a~~~I~~g~~ILT~g~--S~tV~~~L~~A~~~-------~--~~f~ViV~Esr-P------~~eG----------~~ 241 (406)
++.|+++|++|++|..-|. ...=..+++...++ | ++++++..-+. | ...| -.
T Consensus 5 aeEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~is~~~sp 84 (485)
T TIGR03458 5 ADEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPYQSDP 84 (485)
T ss_pred HHHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEecccCCH
Confidence 3567789999999987554 33333333332221 1 35565542221 1 1112 01
Q ss_pred HHHHHHhCC-CceEEEcchHHHHHhh-----cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 242 LAKELDKKG-LKAIVITDSAVFAMIS-----RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 242 ~a~~L~~~G-I~vt~I~Dsav~~~m~-----~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
..+++.+.| +.++-..-+.+...+. ++|.+|+-+...-.+|.+.=-........+|+ ..+.|+|-+ -+..|
T Consensus 85 ~~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~~~~~aa~-aAk~VIvEV--N~~mP 161 (485)
T TIGR03458 85 TLRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNPTFLE-LADKVIVEV--NTWQP 161 (485)
T ss_pred HHHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccchHHHHHH-hCCEEEEEE--CCCCC
Confidence 245555555 5666666677777664 68999999988888887754433333333333 344455533 34444
No 248
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=44.48 E-value=2.9e+02 Score=28.04 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=51.5
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH--HHHHHHHhCCCceEEEcc---hHHHHHhh-cCCEEEEc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH--ILAKELDKKGLKAIVITD---SAVFAMIS-RVNMVIVG 274 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~--~~a~~L~~~GI~vt~I~D---sav~~~m~-~vd~VllG 274 (406)
..|++-+.+..+..++ .+.+.| =+|++. .|.+.|. .+...+...|++++.+.- ..+...+. +...|++-
T Consensus 67 ~al~~~SG~~Al~~~l-~~l~pG--d~Vi~~--~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~le 141 (380)
T PRK06176 67 KGFAFASGLAGIHAVF-SLFQSG--DHVLLG--DDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLE 141 (380)
T ss_pred CEEEECCHHHHHHHHH-HHcCCC--CEEEEc--CCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEE
Confidence 3466655565565444 344334 355553 4556552 344567778999887642 23333333 34444441
Q ss_pred ceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 275 VHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 275 Adav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
. -.-..|.+.. --.++-+|++++++|+|
T Consensus 142 s-P~Nptg~~~d---i~~I~~la~~~gi~viv 169 (380)
T PRK06176 142 T-PSNPLLKITD---LAQCASVAKDHGLLTIV 169 (380)
T ss_pred C-CCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 1 0011122221 33578889999998887
No 249
>PRK07681 aspartate aminotransferase; Provisional
Probab=44.47 E-value=2.3e+02 Score=28.60 Aligned_cols=102 Identities=13% Similarity=0.166 Sum_probs=52.4
Q ss_pred ccc-CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc---hH----HHHH----
Q 045642 197 IHQ-NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD---SA----VFAM---- 264 (406)
Q Consensus 197 I~~-g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D---sa----v~~~---- 264 (406)
+.. ..+++|.|.+..+..++....+.| -+|++. .|.+.+...+ +...|+++..++- .. ...+
T Consensus 90 ~~~~~~I~it~G~~~al~~~~~~~~~~G--d~Vlv~--~P~y~~~~~~--~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~ 163 (399)
T PRK07681 90 LNADKEVLLLMGSQDGLVHLPMVYANPG--DIILVP--DPGYTAYETG--IQMAGATSYYMPLKKENDFLPDLELIPEEI 163 (399)
T ss_pred CCCCCeEEECCCcHHHHHHHHHHhCCCC--CEEEEC--CCCccchHHH--HHhcCCEEEEEecCCCCCCcCCHHHHHHhc
Confidence 344 457778777776666555444333 345554 4766664332 3457888777652 11 1112
Q ss_pred hhcCCEEEEc-ceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 265 ISRVNMVIVG-VHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 265 m~~vd~VllG-Adav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
-+++..|++. .+. +.|.++++---..++-.|+.+++++++
T Consensus 164 ~~~~k~v~l~~P~N--PTG~~~s~~~~~~i~~~a~~~~~~iI~ 204 (399)
T PRK07681 164 ADKAKMMILNFPGN--PVPAMAHEDFFKEVIAFAKKHNIIVVH 204 (399)
T ss_pred cccceEEEEeCCCC--CcCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 1234344332 111 123333333345677788999986663
No 250
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=44.27 E-value=2.3e+02 Score=26.44 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=68.0
Q ss_pred HHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCC------CC--------cch----HHHHHHHHhCC
Q 045642 189 IAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGA------PK--------FEG----HILAKELDKKG 250 (406)
Q Consensus 189 I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~Esr------P~--------~eG----~~~a~~L~~~G 250 (406)
++..+.+.|. +.+|+..|...+=-.+++.....|.. ++.+++.. -. .-| ..+++.|.+.+
T Consensus 11 ~g~~~q~~L~-~~~VlivG~GglGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (228)
T cd00757 11 IGEEGQEKLK-NARVLVVGAGGLGSPAAEYLAAAGVG-KLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN 88 (228)
T ss_pred cCHHHHHHHh-CCcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence 4445555665 46788888887777777777766643 33333211 11 113 35677777654
Q ss_pred --CceEEEcc----hHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 251 --LKAIVITD----SAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 251 --I~vt~I~D----sav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
++++.+.. .....+++++|.||...|..- .-..+.-.|+.+++|++.+.
T Consensus 89 p~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~---------~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 89 PDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFA---------TRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred CCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 55555543 234456788999998877542 23567788999999998863
No 251
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=44.26 E-value=36 Score=32.37 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcccCcEE-EeccChHHHHHHHHHHHH---cCCceEEEEecCCCCcchHHHHHHHHhC-CCceEE---
Q 045642 184 TCREGIAEQAMELIHQNEVI-LTLGHSKFVKEFLCAAKE---KKRSFEVFIADGAPKFEGHILAKELDKK-GLKAIV--- 255 (406)
Q Consensus 184 ~~~~~I~~~a~~~I~~g~~I-LT~g~S~tV~~~L~~A~~---~~~~f~ViV~EsrP~~eG~~~a~~L~~~-GI~vt~--- 255 (406)
..++.|+..+++.|++|+.| |-+|--+.|.+++..-.. +..+ -++-....|.. |..- ..|... +-+|+.
T Consensus 6 ~~~e~ia~r~A~el~dG~~VnlGIGlPtlvan~~~~~~~~~~~sen-g~Lg~g~~p~~-~~~d-~~linaG~~~vt~~pg 82 (225)
T COG2057 6 TEREMIAKRAARELKDGDYVNLGIGLPTLVANYAPEGMNVLLQSEN-GLLGVGPAPLP-GEED-ADLINAGKQPVTALPG 82 (225)
T ss_pred hhHHHHHHHHHHhccCCCEEEecCCchHHhHhhcccccceEEecCc-eeEEecCCCCC-CCCC-cchhhCCCceeEecCC
Confidence 45688999999999999965 447877777776653110 0111 12223333332 1111 223333 355666
Q ss_pred --EcchHHHHHhh---cCCEEEEcceeEeeCCCcccc
Q 045642 256 --ITDSAVFAMIS---RVNMVIVGVHAVMANGGVIAP 287 (406)
Q Consensus 256 --I~Dsav~~~m~---~vd~VllGAdav~~nG~vvnk 287 (406)
+.|++.+..|- ++|.-+|||=-|-.+|.+.|-
T Consensus 83 ~~~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw 119 (225)
T COG2057 83 ASVFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANW 119 (225)
T ss_pred ceEEchHHHHHHHhCCceEEEEecceeecccCceeee
Confidence 66888877764 599999999999999999883
No 252
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=44.25 E-value=2.9e+02 Score=27.12 Aligned_cols=91 Identities=18% Similarity=0.235 Sum_probs=50.8
Q ss_pred cEEEeccChHH---HHHHHHHHHHc-CCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc-hHHHHHhhcCCEEEEcc
Q 045642 201 EVILTLGHSKF---VKEFLCAAKEK-KRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD-SAVFAMISRVNMVIVGV 275 (406)
Q Consensus 201 ~~ILT~g~S~t---V~~~L~~A~~~-~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D-sav~~~m~~vd~VllGA 275 (406)
-+|+.+|.+.. ....+..|.++ .+...+++.-+.... ..+.+.+. .|+.+.+..- ..+..+|+.+|.+++.+
T Consensus 184 ~~i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~--~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~~ 260 (357)
T PRK00726 184 PTLLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGDL--EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICRA 260 (357)
T ss_pred eEEEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH--HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEECC
Confidence 46778877643 23344344322 222233333333222 34444555 7887554432 35788899999988632
Q ss_pred eeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 276 HAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 276 dav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
|+ ...+-|-.+|+|++++.
T Consensus 261 -------------g~-~~~~Ea~~~g~Pvv~~~ 279 (357)
T PRK00726 261 -------------GA-STVAELAAAGLPAILVP 279 (357)
T ss_pred -------------CH-HHHHHHHHhCCCEEEec
Confidence 21 33456778899999875
No 253
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=44.21 E-value=1.1e+02 Score=33.18 Aligned_cols=117 Identities=18% Similarity=0.102 Sum_probs=75.2
Q ss_pred cCcEEEeccChHHHHHHH-HHHHHcCCceEEEEecCCCCcchHHHHHHHHhC---CCceEEEcc----hHHHHHhhc--C
Q 045642 199 QNEVILTLGHSKFVKEFL-CAAKEKKRSFEVFIADGAPKFEGHILAKELDKK---GLKAIVITD----SAVFAMISR--V 268 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L-~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~---GI~vt~I~D----sav~~~m~~--v 268 (406)
.|.+||+.|....+=.-| +...+. +.+-+++=++-.+.-..+.++|... ---..+|.| ..+..+|.. +
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~--~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKF--NPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhc--CCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence 678888877644443333 333322 3344555555555556888899874 122344544 366788887 9
Q ss_pred CEEEEccee----Ee----eCCCcccccchHHHHHHHhhCCCceEEecCCccccccC
Q 045642 269 NMVIVGVHA----VM----ANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLY 317 (406)
Q Consensus 269 d~VllGAda----v~----~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~ 317 (406)
|.|+=.|-- .+ .-|=--|-.||..+|-+|..++|.=+|+-.|-|-....
T Consensus 327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~Pt 383 (588)
T COG1086 327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPT 383 (588)
T ss_pred ceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCc
Confidence 988866511 00 01112368899999999999999999999999987643
No 254
>PLN02686 cinnamoyl-CoA reductase
Probab=43.96 E-value=1.8e+02 Score=29.26 Aligned_cols=109 Identities=15% Similarity=0.228 Sum_probs=61.3
Q ss_pred ccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhC--------CCceEE--Ecch-HHHHHhh
Q 045642 198 HQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKK--------GLKAIV--ITDS-AVFAMIS 266 (406)
Q Consensus 198 ~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~--------GI~vt~--I~Ds-av~~~m~ 266 (406)
..+.+||+.|.++.+=..|..... .+..+|+++...+. .-..+ +.|... ++.+.. +.|. .+..++.
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~-~~G~~V~~~~r~~~-~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLL-RHGYSVRIAVDTQE-DKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHH-HCCCEEEEEeCCHH-HHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 457789999988877766655432 23456765432221 11111 233211 232211 2343 3566778
Q ss_pred cCCEEEEcceeEeeCCCc---------ccccchHHHHHHHhhC-CCceEEecCC
Q 045642 267 RVNMVIVGVHAVMANGGV---------IAPAGLHVLALAAKKH-DVPFVVVAST 310 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~v---------vnk~GT~~lAl~Ak~~-~vPv~V~aes 310 (406)
.+|.|+ ..+++..+++. +|..||..+.-+|+.. +++=+|.+.+
T Consensus 128 ~~d~V~-hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS 180 (367)
T PLN02686 128 GCAGVF-HTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSS 180 (367)
T ss_pred hccEEE-ecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEecc
Confidence 899887 56666544431 3567888888888875 6775555544
No 255
>PRK14364 Maf-like protein; Provisional
Probab=43.65 E-value=1.2e+02 Score=27.88 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHHcCCceEEEEe---cCCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHhh-cCCEEEEcceeE-eeC
Q 045642 208 HSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFE-GHILAKELDKKGLKAIVITDSAVFAMIS-RVNMVIVGVHAV-MAN 281 (406)
Q Consensus 208 ~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m~-~vd~VllGAdav-~~n 281 (406)
.|..=.++|..+ |-.|+|+-. |+.+..+ -..++..|+..+- -.+.+ .-+.+|||||.| .-|
T Consensus 4 ~SprR~elL~~~---g~~f~v~~~~~dE~~~~~~~p~~~~~~lA~~KA----------~~v~~~~~~~~vI~aDTvV~~~ 70 (181)
T PRK14364 4 SSPRRRELLQQL---GLNFEIYSPDIDESVHEGELVHQYVERLAREKA----------QAVLNIFPDSVIIAADTSLGLD 70 (181)
T ss_pred CCHHHHHHHHHC---CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHhCCCCEEEEeCeEEEEC
Confidence 344444455543 578887754 3333333 3577777776541 12222 247899999995 478
Q ss_pred CCcccccchHHHH--HHHhhCCCceEEe
Q 045642 282 GGVIAPAGLHVLA--LAAKKHDVPFVVV 307 (406)
Q Consensus 282 G~vvnk~GT~~lA--l~Ak~~~vPv~V~ 307 (406)
|.++.|-.+..-| ++-+..|....|.
T Consensus 71 g~ilgKP~~~eeA~~~L~~lsG~~h~V~ 98 (181)
T PRK14364 71 GQIIGKPDSKQHAFDIWKQLSGRWHDVF 98 (181)
T ss_pred CEEecCCCCHHHHHHHHHHhCCCCeEEE
Confidence 9999999998776 4556666664443
No 256
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=43.52 E-value=3.5e+02 Score=27.02 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=37.8
Q ss_pred CceEEEEecCCCCcchH--HHHHHHHhCCCceEEEcch---------HHHHHhhcCCEEEEcceeEeeCCCcccccchHH
Q 045642 224 RSFEVFIADGAPKFEGH--ILAKELDKKGLKAIVITDS---------AVFAMISRVNMVIVGVHAVMANGGVIAPAGLHV 292 (406)
Q Consensus 224 ~~f~ViV~EsrP~~eG~--~~a~~L~~~GI~vt~I~Ds---------av~~~m~~vd~VllGAdav~~nG~vvnk~GT~~ 292 (406)
+.-+|++.+ |.+-+. .+.......|+++.+++-. .+...+..-+++++-+..-...|.+.. --.
T Consensus 103 ~gd~vl~~~--~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~~ 177 (397)
T TIGR01976 103 PGDEVIVTR--LDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVD---LAA 177 (397)
T ss_pred CCCEEEEcC--CchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCC---HHH
Confidence 334666654 333332 2223345678888776421 122222222333333322233443322 345
Q ss_pred HHHHHhhCCCceEE
Q 045642 293 LALAAKKHDVPFVV 306 (406)
Q Consensus 293 lAl~Ak~~~vPv~V 306 (406)
++-+|+.+++.|+|
T Consensus 178 i~~~~~~~~~~~iv 191 (397)
T TIGR01976 178 ITELVHAAGALVVV 191 (397)
T ss_pred HHHHHHHcCCEEEE
Confidence 77778888887765
No 257
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=43.46 E-value=42 Score=30.18 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=42.0
Q ss_pred hcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCC
Q 045642 196 LIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGL 251 (406)
Q Consensus 196 ~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI 251 (406)
.|++-+.|.-|+.+.+....|+ .|+++-|.+=|+-=.+.-..+|+.|++.|.
T Consensus 77 ~I~~AdlVIsHAGaGS~letL~----l~KPlivVvNd~LMDNHQ~ELA~qL~~egy 128 (170)
T KOG3349|consen 77 DIRSADLVISHAGAGSCLETLR----LGKPLIVVVNDSLMDNHQLELAKQLAEEGY 128 (170)
T ss_pred HHhhccEEEecCCcchHHHHHH----cCCCEEEEeChHhhhhHHHHHHHHHHhcCc
Confidence 4566678888988888776664 678888888888877888899999999885
No 258
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=43.45 E-value=1.4e+02 Score=30.30 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=40.7
Q ss_pred HHHHHHHhCCCceEEEcch--------HHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhh----CCCceEEec
Q 045642 241 ILAKELDKKGLKAIVITDS--------AVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKK----HDVPFVVVA 308 (406)
Q Consensus 241 ~~a~~L~~~GI~vt~I~Ds--------av~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~----~~vPv~V~a 308 (406)
..++.|.+.||++++|.-. .+....++..+|++ +.++....-.|+...+.++.. ...|+.-++
T Consensus 245 ~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvt-----vEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg 319 (356)
T PLN02683 245 KAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVT-----VEEGWPQHGVGAEICASVVEESFDYLDAPVERIA 319 (356)
T ss_pred HHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEEE-----EeCCCcCCCHHHHHHHHHHHhchhccCCCeEEec
Confidence 3445566667776665322 34455566766654 455566666889888888887 367887776
Q ss_pred C
Q 045642 309 S 309 (406)
Q Consensus 309 e 309 (406)
-
T Consensus 320 ~ 320 (356)
T PLN02683 320 G 320 (356)
T ss_pred c
Confidence 3
No 259
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=43.29 E-value=93 Score=32.78 Aligned_cols=91 Identities=21% Similarity=0.222 Sum_probs=56.3
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEe
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVM 279 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~ 279 (406)
+..|+++|-..+=+.+.+...+.| .+|++.+.+|.-++.... .+...||++..-.... .....+|.|++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~~~~~~~-~~~~~~i~~~~g~~~~--~~~~~~d~vV~SP---- 77 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAAQ-PLLLEGIEVELGSHDD--EDLAEFDLVVKSP---- 77 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCccchhhh-hhhccCceeecCccch--hccccCCEEEECC----
Confidence 666777654433344444444333 789999999988665444 6777788777654433 3345567766643
Q ss_pred eCCCcccccchHHHHHHHhhCCCceE
Q 045642 280 ANGGVIAPAGLHVLALAAKKHDVPFV 305 (406)
Q Consensus 280 ~nG~vvnk~GT~~lAl~Ak~~~vPv~ 305 (406)
|+ -.+.++-..|+..|+||+
T Consensus 78 ---Gi---~~~~p~v~~A~~~gi~i~ 97 (448)
T COG0771 78 ---GI---PPTHPLVEAAKAAGIEII 97 (448)
T ss_pred ---CC---CCCCHHHHHHHHcCCcEE
Confidence 22 234556777778888866
No 260
>PRK00648 Maf-like protein; Reviewed
Probab=43.19 E-value=1.4e+02 Score=27.55 Aligned_cols=91 Identities=19% Similarity=0.134 Sum_probs=57.8
Q ss_pred ccChHHHHHHHHHHHHcCCceEEE-Ee---cCCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHhh--cCCEEEEcceeE
Q 045642 206 LGHSKFVKEFLCAAKEKKRSFEVF-IA---DGAPKFE-GHILAKELDKKGLKAIVITDSAVFAMIS--RVNMVIVGVHAV 278 (406)
Q Consensus 206 ~g~S~tV~~~L~~A~~~~~~f~Vi-V~---EsrP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m~--~vd~VllGAdav 278 (406)
-|.|..=.++|+.+ |-.|+|+ .. |+....+ -..++..|+..+- -.+.+ .=+.+|+|||.|
T Consensus 8 AS~SprR~elL~~~---g~~f~v~~~~~~dE~~~~~~~p~~~v~~lA~~Ka----------~~v~~~~~~~~~VI~aDTv 74 (191)
T PRK00648 8 ASSSPRRKEILEGF---RIPFEVVPSPFVEESYPYSLDPEEITLELARLKA----------EAVRSDLFPDELIITADTI 74 (191)
T ss_pred eCCCHHHHHHHHHC---CCCeEEEeCCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHhhCCCCEEEEeCeE
Confidence 35666666666654 5789888 32 3322222 3577777776541 11122 236799999996
Q ss_pred e-eCCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 279 M-ANGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 279 ~-~nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
. -||.++.|-.+..-| ++.+..|....|.+.
T Consensus 75 V~~~g~ilgKP~~~~eA~~~L~~lsG~~h~v~T~ 108 (191)
T PRK00648 75 VWYDGKVLGKPKDEEEAVEMLRTLSGKTHEVITG 108 (191)
T ss_pred EEECCEEeCCCCCHHHHHHHHHHhCCCCeEEEEE
Confidence 5 788999999998776 566667776666544
No 261
>PLN02187 rooty/superroot1
Probab=43.12 E-value=2.8e+02 Score=28.96 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=52.7
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc----------hHHHHHhh
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD----------SAVFAMIS 266 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D----------sav~~~m~ 266 (406)
+...++++|.|.+..+..++....+.| -+|++.+ |.+.+... .....|+.+..++- ..+-..+.
T Consensus 129 ~~~~~I~it~G~~~al~~~~~~l~~pG--d~Vlv~~--P~y~~y~~--~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~ 202 (462)
T PLN02187 129 LTPEDIFLTAGCNQGIEIVFESLARPN--ANILLPR--PGFPHYDA--RAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD 202 (462)
T ss_pred CCcccEEEeCCHHHHHHHHHHHhcCCC--CEEEEeC--CCCccHHH--HHHHcCCEEEEEeCccccCCccCHHHHHHhcC
Confidence 556678888887777766666655333 3455443 66666432 23456777765531 11222222
Q ss_pred -cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 267 -RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 267 -~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+..++++.-=. -+.|.++.+-=-..++-.|+.++++|++
T Consensus 203 ~~~~~v~i~nP~-NPTG~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 203 ENTVAMVVINPN-NPCGNVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred CCcEEEEEeCCC-CCCCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 22233332100 1223333322224566678888877764
No 262
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=43.02 E-value=3.9e+02 Score=27.42 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=52.3
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH-HHHHHHH-hCCCceEEEcch-------HHHHHh-hcCCE
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH-ILAKELD-KKGLKAIVITDS-------AVFAMI-SRVNM 270 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~-~~a~~L~-~~GI~vt~I~Ds-------av~~~m-~~vd~ 270 (406)
.+++|-|.+..+..++.... ..++-+|++.+ |.+... ..++.+. ..|+++..++-. .+...+ ++...
T Consensus 131 ~v~~~~g~t~~~~~~~~a~~-~~~g~~Vlv~~--~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i~~~t~~ 207 (447)
T PRK00451 131 NASMYDGATALAEAALMAVR-ITKRKKVLVSG--AVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAVDDDTAA 207 (447)
T ss_pred eEEecCcHHHHHHHHHHHHH-hcCCCEEEEeC--ccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhcCCCeEE
Confidence 45677776665555554432 12334677754 444332 3333333 368888888532 122223 23433
Q ss_pred EEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 271 VIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 271 VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
|++.. . -.. |.+.. --.++-+|++++++|+|
T Consensus 208 v~l~~-p-n~t-G~v~~--l~~I~~~a~~~~~~~iv 238 (447)
T PRK00451 208 VVVQY-P-NFF-GVIED--LEEIAEIAHAGGALFIV 238 (447)
T ss_pred EEEEC-C-CCC-CeeCC--HHHHHHHHHHCCCEEEE
Confidence 44432 2 223 33333 34578899999999987
No 263
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=42.90 E-value=67 Score=32.59 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=38.6
Q ss_pred HhcccCc-EEEeccChHHHHHHHHHHHHcC----------CceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc
Q 045642 195 ELIHQNE-VILTLGHSKFVKEFLCAAKEKK----------RSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD 258 (406)
Q Consensus 195 ~~I~~g~-~ILT~g~S~tV~~~L~~A~~~~----------~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D 258 (406)
+.+.+|. -++++.++++|+.|+..+.+.+ ...+|++. |..+++.|.+.|+++ .+++
T Consensus 195 ~~l~~~~~d~v~FtS~stv~~f~~~l~~~~~~~~~~~~~~~~~~i~aI-------Gp~Ta~al~~~G~~~-~vp~ 261 (381)
T PRK07239 195 DAIASRGLDAVTFTSAPAVAALLERAREMGLLDQLLAALRTDVLAACV-------GPVTAAPLVRAGVPT-SAPE 261 (381)
T ss_pred HHHHcCCccEEEEcCHHHHHHHHHHHHHcCChHHHHHhhccCCEEEEE-------CHHHHHHHHHcCCCc-cCCC
Confidence 4454443 3556677889999998775432 23345554 889999999999988 4665
No 264
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=42.88 E-value=96 Score=32.32 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=39.2
Q ss_pred cCcEEEeccChHHHHHH-HHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 199 QNEVILTLGHSKFVKEF-LCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~-L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
++..|+.+|-..+=... .+.+. .+..+|++.|.++.. . ..+|.+.||.+.+ ... . ..+..+|.||++.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~--~~G~~V~~~D~~~~~---~-~~~l~~~gi~~~~-~~~-~-~~~~~~d~vv~sp 74 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLL--NLGYKVSGSDLKESA---V-TQRLLELGAIIFI-GHD-A-ENIKDADVVVYSS 74 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHH--hCCCeEEEECCCCCh---H-HHHHHHCCCEEeC-CCC-H-HHCCCCCEEEECC
Confidence 34456665544333332 22222 245789999988763 2 3458888988765 221 1 2345788888765
No 265
>PRK06348 aspartate aminotransferase; Provisional
Probab=42.85 E-value=2.9e+02 Score=27.68 Aligned_cols=96 Identities=25% Similarity=0.297 Sum_probs=52.7
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc---c-------hHHHHHh-
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT---D-------SAVFAMI- 265 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~---D-------sav~~~m- 265 (406)
+....+++|.|.+..+..++......|. +|++. .|.+.+...+-. ..|..+..++ + ..+-..+
T Consensus 87 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 160 (384)
T PRK06348 87 FKRNEIMATVGACHGMYLALQSILDPGD--EVIIH--EPYFTPYKDQIE--MVGGKPIILETYEEDGFQINVKKLEALIT 160 (384)
T ss_pred CChhhEEEcCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHHHHH--HcCCEEEEecCCcCcCCcCCHHHHHHhhC
Confidence 4556688888887777666666553343 55553 477766433332 3466655553 1 1222222
Q ss_pred hcCCEEEEcceeEeeCCCcccccch-------HHHHHHHhhCCCceEE
Q 045642 266 SRVNMVIVGVHAVMANGGVIAPAGL-------HVLALAAKKHDVPFVV 306 (406)
Q Consensus 266 ~~vd~VllGAdav~~nG~vvnk~GT-------~~lAl~Ak~~~vPv~V 306 (406)
++...|++ + ..-|..|. ..++-.|+++++.+++
T Consensus 161 ~~~~~v~l-------~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 200 (384)
T PRK06348 161 SKTKAIIL-------N-SPNNPTGAVFSKETLEEIAKIAIEYDLFIIS 200 (384)
T ss_pred cCccEEEE-------e-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 23444433 2 23466665 4466678888876654
No 266
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=42.81 E-value=93 Score=29.29 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEee----CCCcccccchHHHHHHHhhCCCceEEecCCccc
Q 045642 240 HILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMA----NGGVIAPAGLHVLALAAKKHDVPFVVVASTHEL 313 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~----nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~ 313 (406)
+.+++.|.+.|+.+.+++.... .++++|.+++.--.-.. .|.+............+...++|++-+|--+-+
T Consensus 15 ~~~~~al~~~G~~~~~i~~~~~--~l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~Ql 90 (227)
T TIGR01737 15 RDTVYALRLLGVDAEIVWYEDG--SLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQI 90 (227)
T ss_pred HHHHHHHHHCCCeEEEEecCCC--CCCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHH
Confidence 5778999999999888865432 15678887774311000 001111111111122344578999999876643
No 267
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=42.40 E-value=97 Score=28.17 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=38.0
Q ss_pred EEEeccChHHHHHHHHHHHHcC---CceEEEEecCCCCcchHHHHHHHHhCCCceEEEc
Q 045642 202 VILTLGHSKFVKEFLCAAKEKK---RSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT 257 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~---~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~ 257 (406)
+|-||.....+.++|....++. .+++|+|++..+..+-..+++.+.+....+.++.
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~ 63 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLID 63 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEe
Confidence 3556777777888888877554 3688888887776665666666665544455554
No 268
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=42.38 E-value=94 Score=29.20 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=58.6
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeE
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav 278 (406)
.|..|+..|......+=++...+.|.+..|+-.+..|.. ..-..+.+ +..+-+.--......++.|++.++-
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el-----~~~~~~~~--i~~~~~~~~~~~~~~~~lviaAt~d- 82 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPEL-----KALIEEGK--IKWIEREFDAEDLDDAFLVIAATDD- 82 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHH-----HHHHHhcC--cchhhcccChhhhcCceEEEEeCCC-
Confidence 567899999998888877777767887777777663332 22222222 2222222223333347777776543
Q ss_pred eeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 279 MANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 279 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
.---..++.+|+.+++||.++-
T Consensus 83 --------~~ln~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 83 --------EELNERIAKAARERRILVNVVD 104 (210)
T ss_pred --------HHHHHHHHHHHHHhCCceeccC
Confidence 2233568899999999999874
No 269
>PRK12452 cardiolipin synthetase; Reviewed
Probab=42.28 E-value=1.4e+02 Score=32.01 Aligned_cols=51 Identities=10% Similarity=-0.060 Sum_probs=32.4
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEecCCCCcch-----HHHHHHHHhCCCceEEEcc
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-----HILAKELDKKGLKAIVITD 258 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-----~~~a~~L~~~GI~vt~I~D 258 (406)
.....+...|..|+++|.+.++++.+ +|...+ +...++|.+.|+++.....
T Consensus 368 ~pd~~l~~aL~~Aa~rGV~Vrii~p~-~~D~~~~~~a~~~~~~~L~~aGv~I~~y~~ 423 (509)
T PRK12452 368 IPDQETLTLLRLSAISGIDVRILYPG-KSDSIISDQASQSYFTPLLKAGASIYSYKD 423 (509)
T ss_pred CCCHHHHHHHHHHHHcCCEEEEEcCC-CCChHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 34456777788777777776666654 443322 3445678888888866543
No 270
>COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.20 E-value=5.2e+02 Score=28.70 Aligned_cols=175 Identities=16% Similarity=0.240 Sum_probs=94.0
Q ss_pred cCHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh-cCCCcccHHHHHHHHHHHHHhhccCCCccccccc
Q 045642 21 QGSYETARLTAELLRAVILQHKEPTASGAASLIEAVRRVGEQLIA-ANPVELAVGNIVRHVLHIIREEDLSPLTDIVGEL 99 (406)
Q Consensus 21 ~Gs~~~A~~t~~~lr~~v~~~~~~~~~~~~~L~~~i~~~g~~L~~-a~P~~~~i~Nivrrvl~~Iree~~~~~~~~~~~~ 99 (406)
.-+.-++....+++|+-... .-....+++|++.+++....|.+ .-|...+++-+.+-+...+||-.
T Consensus 482 d~~sVi~THl~evir~~a~e--Ll~rqevq~Lld~l~~~~p~lvEei~p~~is~s~iqkVLq~LL~E~V----------- 548 (696)
T COG1298 482 DPSSVIATHLSEVIRNHAHE--LLGRQEVQQLLDRLAEEYPKLVEEIVPKKISLSTLQKVLQNLLKERV----------- 548 (696)
T ss_pred cchHHHHHhHHHHHHHhHHH--HhHHHHHHHHHHHHHHHhHHHHHHhccCccCHHHHHHHHHHHHhcCC-----------
Confidence 44566677777777764432 12346677888888887777766 56777777665554444454421
Q ss_pred ccccccchhhhhhhcccccCcccccCCCCCCchhhhhhhcCCCCCccccCCCccccccCcccchHHHHHHHHHHHHHHHH
Q 045642 100 KLSAEDDVEDIAEDENSQKSSATTDGCLLKPPLLLAVFEHLPDSAPACQTFSSENIFAGKADKSAKKLKSELIKAVNELI 179 (406)
Q Consensus 100 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~k~~l~~~i~~~~ 179 (406)
+...+..+++...+.++.. ++... +.+.+
T Consensus 549 -----------------------------sIRdl~tIlEtlad~a~~~--------------kd~~~----L~e~V---- 577 (696)
T COG1298 549 -----------------------------SIRDLPTILETLADYAPIT--------------KDPDE----LTEKV---- 577 (696)
T ss_pred -----------------------------ccccHHHHHHHHHHhcccC--------------CCHHH----HHHHH----
Confidence 1234455555443332110 11111 22222
Q ss_pred HHHHHHHHHHHHHHHH-hcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch------HHHHHHHHhCCCc
Q 045642 180 EDINTCREGIAEQAME-LIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG------HILAKELDKKGLK 252 (406)
Q Consensus 180 ~e~~~~~~~I~~~a~~-~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG------~~~a~~L~~~GI~ 252 (406)
+..++++-+. +..++.++-++.-+..++.+|....+++. ...-..=.|.... +..+++....|.+
T Consensus 578 ------R~~L~r~I~~~~~~~~~~L~VitL~~~~E~~l~~s~~~~~--~~~~~~i~p~~~~~l~~~v~~~~~~~~~~G~~ 649 (696)
T COG1298 578 ------RQALGRQITQQLLDENGELEVITLDPSLEQLLLNSLQKGG--ELDELPLDPDLLEKLIRQVKEELERVEQKGFP 649 (696)
T ss_pred ------HHHHHHHHHHHhhCcCCeEEEEEeChHHHHHHHHHHhccC--ccccccCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2222222222 44445544334444568999988875443 3333333454332 3445566678988
Q ss_pred eEEEcchHHHHHhhc
Q 045642 253 AIVITDSAVFAMISR 267 (406)
Q Consensus 253 vt~I~Dsav~~~m~~ 267 (406)
..+++-..+..+|++
T Consensus 650 ~VLl~s~~~R~~~~~ 664 (696)
T COG1298 650 PVLLVSPELRPYLRR 664 (696)
T ss_pred eEEEeCcchHHHHHH
Confidence 777777777777764
No 271
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=42.17 E-value=3.3e+02 Score=27.99 Aligned_cols=73 Identities=10% Similarity=0.106 Sum_probs=42.6
Q ss_pred eEEEEecCCCCcchHHHHHHHHhCCCceE-EEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCce
Q 045642 226 FEVFIADGAPKFEGHILAKELDKKGLKAI-VITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPF 304 (406)
Q Consensus 226 f~ViV~EsrP~~eG~~~a~~L~~~GI~vt-~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv 304 (406)
-.|.++-.-+...-+.+.+.|.+.||++. .++|+.+.- ++.. -|+-.+. ++.+.+....-.+-++||+|+
T Consensus 154 ~~vniiG~~~~~d~~elk~lL~~~Gi~v~~~lpd~~~~e-~~~~----~~~~~~~----~~~~~~~~~A~~Le~~~GiP~ 224 (407)
T TIGR01279 154 RALVLVGSVNDIVADQLRLELKQLGIPVVGFLPASHFTE-LPVI----GPGTVVA----PLQPYLSDTATTLRRERGAKV 224 (407)
T ss_pred CcEEEEeccChhhHHHHHHHHHHcCCeEEEEeCCCCcch-hhhc----CCCeEEE----EechHHHHHHHHHHHHhCCcc
Confidence 34444433332223678888889999998 889876543 2211 0111111 344556665556777899998
Q ss_pred EEe
Q 045642 305 VVV 307 (406)
Q Consensus 305 ~V~ 307 (406)
+.+
T Consensus 225 ~~~ 227 (407)
T TIGR01279 225 LSA 227 (407)
T ss_pred ccC
Confidence 865
No 272
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=42.16 E-value=3.3e+02 Score=26.39 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=49.8
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc--------hHHHHHhhc---CCE
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD--------SAVFAMISR---VNM 270 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D--------sav~~~m~~---vd~ 270 (406)
+++|-|.|..+..++......+ =+|++.+ .+.+ |..+.......|+++..++- ..+-..+.. ...
T Consensus 53 i~~~~~gt~~l~~~~~~~~~~~--~~vi~~~-~~~~-~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~ 128 (355)
T TIGR03301 53 VLLQGSGTFAVEATIGSLVPRD--GKLLVLI-NGAY-GERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADPDITH 128 (355)
T ss_pred EEEeCCcHHHHHHHHHhccCCC--CeEEEEC-CCch-hhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCCCceE
Confidence 4456677777777776665332 2455543 2222 22233444557888887752 133333322 222
Q ss_pred EEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 271 VIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 271 VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
|+ -++.=..+|.+. . --.++-+|+.|+++++|=
T Consensus 129 v~-~~~~~~~~G~~~-~--~~~i~~l~~~~~~~livD 161 (355)
T TIGR03301 129 VA-TVHHETTTGILN-P--LEAIAKVARSHGAVLIVD 161 (355)
T ss_pred EE-EEecCCcccchh-H--HHHHHHHHHHcCCEEEEE
Confidence 22 121111223332 2 245777888999887773
No 273
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=41.96 E-value=4e+02 Score=27.35 Aligned_cols=99 Identities=12% Similarity=0.022 Sum_probs=50.2
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch-HH-HHHHHHhCCCceEEEcc---hHHHHHhhcCCEEEEcc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG-HI-LAKELDKKGLKAIVITD---SAVFAMISRVNMVIVGV 275 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~~-~a~~L~~~GI~vt~I~D---sav~~~m~~vd~VllGA 275 (406)
+.|+|-+.+..+..++....+.| -+|++ ..|.+.+ .. +...+...|+.+..+.- ..+...+..-+++|+-.
T Consensus 77 ~~v~~~sG~~Ai~~~l~all~pG--D~Vvv--~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~ 152 (405)
T PRK08776 77 GGVITATGMGAINLVLNALLQPG--DTLVV--PHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIE 152 (405)
T ss_pred ceEEEcCHHHHHHHHHHHHhCCC--CEEEE--ccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 45666666655555555444334 34554 3577666 22 33335567888888752 22333332222333222
Q ss_pred eeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 276 HAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 276 dav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
.---..|.+.. -..++-+|+.++++++|
T Consensus 153 ~P~NPtG~v~d---l~~I~~la~~~gi~vIv 180 (405)
T PRK08776 153 TPSNPLLRITD---LRFVIEAAHKVGALTVV 180 (405)
T ss_pred CCCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 11122232211 23466778999988776
No 274
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=41.89 E-value=1.1e+02 Score=32.37 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=38.1
Q ss_pred HHHHHHHHhcccCcEEEe----ccChHHHHHHHHHHHHcCCceEEEEecCCCCc-chHHHHHHHHhCCCceEE
Q 045642 188 GIAEQAMELIHQNEVILT----LGHSKFVKEFLCAAKEKKRSFEVFIADGAPKF-EGHILAKELDKKGLKAIV 255 (406)
Q Consensus 188 ~I~~~a~~~I~~g~~ILT----~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~-eG~~~a~~L~~~GI~vt~ 255 (406)
.+-+.+..++..|-.+++ +|+|..+..+++..++.-...-|++ ++ --...++.|.+.|+++.-
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~-----g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA-----GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE-----eccCCHHHHHHHHHhCCCEEE
Confidence 334444455555543332 7888888888888875433455665 21 115667888888776554
No 275
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=41.79 E-value=1.7e+02 Score=26.99 Aligned_cols=70 Identities=23% Similarity=0.420 Sum_probs=41.7
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEE-ecCCCCcchHHHHHHHHhCCCceEEEc----------chHHHHHhh--cC
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFI-ADGAPKFEGHILAKELDKKGLKAIVIT----------DSAVFAMIS--RV 268 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV-~EsrP~~eG~~~a~~L~~~GI~vt~I~----------Dsav~~~m~--~v 268 (406)
.||.-|.++....++....+.+....|.+ +-.+|...+ .....+.||++..+. |..+...++ ++
T Consensus 4 ail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~---~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 4 VVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYG---LERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchH---HHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 46666777777777777764444455543 345565544 344456799988755 233444444 47
Q ss_pred CEEEEc
Q 045642 269 NMVIVG 274 (406)
Q Consensus 269 d~VllG 274 (406)
|.+++-
T Consensus 81 D~iv~~ 86 (190)
T TIGR00639 81 DLVVLA 86 (190)
T ss_pred CEEEEe
Confidence 777663
No 276
>PRK08960 hypothetical protein; Provisional
Probab=41.78 E-value=3.3e+02 Score=27.28 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHH----hcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc-
Q 045642 183 NTCREGIAEQAME----LIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT- 257 (406)
Q Consensus 183 ~~~~~~I~~~a~~----~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~- 257 (406)
...++.|+++-.. .+...++++|.|.+..+..++......| -+|++ ..|.+.+...... ..|..+..++
T Consensus 72 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~g--d~vlv--~~p~y~~~~~~~~--~~g~~~~~v~~ 145 (387)
T PRK08960 72 PALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPG--KHWLL--ADPGYPCNRHFLR--LVEGAAQLVPV 145 (387)
T ss_pred HHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCC--CEEEE--cCCCCcchHHHHH--hcCCeEEEEec
Confidence 3444555554332 2556778888888877766665554333 34555 3577666433222 3465555543
Q ss_pred chH------HHHHh---h-cCCEEEEcceeEeeCCCcccccchH-------HHHHHHhhCCCceEE
Q 045642 258 DSA------VFAMI---S-RVNMVIVGVHAVMANGGVIAPAGLH-------VLALAAKKHDVPFVV 306 (406)
Q Consensus 258 Dsa------v~~~m---~-~vd~VllGAdav~~nG~vvnk~GT~-------~lAl~Ak~~~vPv~V 306 (406)
|.. +..+. . +..+++ +.| .-|.+|+. .++-+|+++++.+++
T Consensus 146 ~~~~~~~~d~~~l~~~~~~~~~~i~------i~~--p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 146 GPDSRYQLTPALVERHWNADTVGAL------VAS--PANPTGTLLSRDELAALSQALRARGGHLVV 203 (387)
T ss_pred CcccCCCCCHHHHHHHhCccceEEE------EEC--CCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 111 22222 2 222222 222 24677764 466678888887654
No 277
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=41.48 E-value=46 Score=30.53 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeC-CCcccccchHHHHHHHhhCCCceEEecCCcccccc
Q 045642 240 HILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMAN-GGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSL 316 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~n-G~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~ 316 (406)
..+++.|...|++++++.+.. -+.++|.+|++--.-... .......|-.....-+...++||+-+|--+-+.-.
T Consensus 13 ~~~~~~l~~~g~~v~~~~~~~---~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~ 87 (199)
T PRK13181 13 RSVANALKRLGVEAVVSSDPE---EIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFE 87 (199)
T ss_pred HHHHHHHHHCCCcEEEEcChH---HhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhh
Confidence 577889999999999986632 246788887743100000 00012234333333344679999999987666443
No 278
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=41.41 E-value=1.1e+02 Score=29.43 Aligned_cols=87 Identities=18% Similarity=0.140 Sum_probs=47.6
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEE-EecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEee
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVF-IADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMA 280 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~Vi-V~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~ 280 (406)
.|..+|.+..+=+.+..+..+...+++. +++..|...... ...|+. ...| +..++.++|.|+.-+
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-----~~~~i~--~~~d--l~~ll~~~DvVid~t----- 68 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-----GALGVA--ITDD--LEAVLADADVLIDFT----- 68 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-----CCCCcc--ccCC--HHHhccCCCEEEECC-----
Confidence 4666776333333333333333456654 566555432211 233443 2223 333455677666433
Q ss_pred CCCcccccchHHHHHHHhhCCCceEEe
Q 045642 281 NGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 281 nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
.......++..|-.+|+||++.
T Consensus 69 -----~p~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 69 -----TPEATLENLEFALEHGKPLVIG 90 (257)
T ss_pred -----CHHHHHHHHHHHHHcCCCEEEE
Confidence 5556688999999999999965
No 279
>PRK00884 Maf-like protein; Reviewed
Probab=41.32 E-value=1.5e+02 Score=27.48 Aligned_cols=90 Identities=16% Similarity=0.144 Sum_probs=56.8
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEe---cCCCCcch-HHHHHHHHhCCCceEEEcchHHHHHhh-cCCEEEEcceeEe-e
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFEG-HILAKELDKKGLKAIVITDSAVFAMIS-RVNMVIVGVHAVM-A 280 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~eG-~~~a~~L~~~GI~vt~I~Dsav~~~m~-~vd~VllGAdav~-~ 280 (406)
|.|..=.++|+.+ |-.|.|+.. |+.+..+. ..++..|+..+-. .+.+ .-+.+|+|||.|. -
T Consensus 8 S~SprR~elL~~~---g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~KA~----------~v~~~~~~~~VI~aDTvV~~ 74 (194)
T PRK00884 8 STSPYRRALLEKL---QLPFECAAPEVDETPRPGESPRQLVLRLAQEKAQ----------SLASRYPDHLIIGSDQVCVL 74 (194)
T ss_pred CCCHHHHHHHHHC---CCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHH----------HHHhhCCCCEEEEeCeEEEE
Confidence 5565555566544 578988754 33333332 5677777764411 1112 2367999999965 7
Q ss_pred CCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 281 NGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 281 nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
||.++.|-.+..-| ++-+..|....|.+.
T Consensus 75 ~g~ilgKP~~~eeA~~~L~~lsG~~h~V~Tg 105 (194)
T PRK00884 75 DGEITGKPLTEENARAQLRKASGNIVTFYTG 105 (194)
T ss_pred CCEEecCCCCHHHHHHHHHHHCCCceEEEEE
Confidence 88899999998777 466667776666543
No 280
>PRK06756 flavodoxin; Provisional
Probab=41.29 E-value=94 Score=26.77 Aligned_cols=67 Identities=12% Similarity=0.037 Sum_probs=36.6
Q ss_pred HHHHHHHhCCCceEEEcchH--HHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHH-HhhCCCceEEec
Q 045642 241 ILAKELDKKGLKAIVITDSA--VFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALA-AKKHDVPFVVVA 308 (406)
Q Consensus 241 ~~a~~L~~~GI~vt~I~Dsa--v~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~-Ak~~~vPv~V~a 308 (406)
.+++.|.+.|+++.++.-.. ...-+.+.|.|++|+ ..+.+|.+-..+-.+.-.+. ....++|+.+++
T Consensus 21 ~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gs-pt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fg 90 (148)
T PRK06756 21 HIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGA-YTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFG 90 (148)
T ss_pred HHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEe-CCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 34555666788776653221 235577899999998 33444444322222211111 123578888864
No 281
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=41.28 E-value=2.1e+02 Score=29.87 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHH----HHHHHhcc--cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCC
Q 045642 165 KKLKSELIKAVNELIED--INTCREGIA----EQAMELIH--QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPK 236 (406)
Q Consensus 165 ~~~k~~l~~~i~~~~~e--~~~~~~~I~----~~a~~~I~--~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~ 236 (406)
..+.+..+...+.+-.| |....-.|+ +.|...+. .+..+|.+|.+.......++..++|. .+|+|+ .|-.
T Consensus 135 ~~lFqkAi~~gKrvRseT~I~~~~VSi~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~-~~i~Ia-NRT~ 212 (414)
T COG0373 135 NRLFQKAISVGKRVRSETGIGKGAVSISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGV-KKITIA-NRTL 212 (414)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccchHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCC-CEEEEE-cCCH
Confidence 55555566666666554 211111122 23333333 45679999999999988888885553 344444 6655
Q ss_pred cchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEccee
Q 045642 237 FEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHA 277 (406)
Q Consensus 237 ~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAda 277 (406)
--...+|++|. ..+++-.-+..++..+|.||.+..+
T Consensus 213 erA~~La~~~~-----~~~~~l~el~~~l~~~DvVissTsa 248 (414)
T COG0373 213 ERAEELAKKLG-----AEAVALEELLEALAEADVVISSTSA 248 (414)
T ss_pred HHHHHHHHHhC-----CeeecHHHHHHhhhhCCEEEEecCC
Confidence 55566666665 6677777788889999999998643
No 282
>PRK10481 hypothetical protein; Provisional
Probab=40.84 E-value=1.2e+02 Score=28.90 Aligned_cols=89 Identities=15% Similarity=0.063 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch-------HHHHHhhcCCEEEEcceeEeeC
Q 045642 209 SKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS-------AVFAMISRVNMVIVGVHAVMAN 281 (406)
Q Consensus 209 S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds-------av~~~m~~vd~VllGAdav~~n 281 (406)
+..+ .-+..|...+++|-|++..-. ++...+++..+.|+++.+...+ .+...-+... --|||+|+-+
T Consensus 116 ~~~i-~~lv~Al~~g~riGVitP~~~---qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~--~~gaD~Ivl~ 189 (224)
T PRK10481 116 SRIL-PPLVAAIVGGHQVGVIVPVEE---QLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELL--DQGADVIVLD 189 (224)
T ss_pred hhhH-HHHHHHhcCCCeEEEEEeCHH---HHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhh--cCCCCEEEEe
Confidence 4444 344444547888988886422 4456677777789998876622 1222211111 1366666665
Q ss_pred CCcccccchHHHHHHHhhCCCceEE
Q 045642 282 GGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 282 G~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+.=++. -..+.+.+..++||+-
T Consensus 190 C~G~~~---~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 190 CLGYHQ---RHRDLLQKALDVPVLL 211 (224)
T ss_pred CCCcCH---HHHHHHHHHHCcCEEc
Confidence 544443 4477899999999984
No 283
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=40.81 E-value=2.2e+02 Score=28.29 Aligned_cols=84 Identities=10% Similarity=0.127 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHh---CCCceEEE---cchHHHHHhhcCCEEEEcceeEeeCCCcc
Q 045642 212 VKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDK---KGLKAIVI---TDSAVFAMISRVNMVIVGVHAVMANGGVI 285 (406)
Q Consensus 212 V~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~---~GI~vt~I---~Dsav~~~m~~vd~VllGAdav~~nG~vv 285 (406)
+...|....+.. ..+++|+-||=- +..+...|.+ ..-.+.+. .++=...+|..+|.|++-+|+|-
T Consensus 170 l~~~l~~~~~~~-~~~~~vttSRRT--p~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvS------ 240 (311)
T PF06258_consen 170 LLDQLAALAAAY-GGSLLVTTSRRT--PPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVS------ 240 (311)
T ss_pred HHHHHHHHHHhC-CCeEEEEcCCCC--cHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHH------
Confidence 444444444333 377888877743 2223333332 11122222 23446778899999999999863
Q ss_pred cccchHHHHHHHhhCCCceEEecCCc
Q 045642 286 APAGLHVLALAAKKHDVPFVVVASTH 311 (406)
Q Consensus 286 nk~GT~~lAl~Ak~~~vPv~V~aes~ 311 (406)
+++- |-..|+||||+.-..
T Consensus 241 ------MvsE-A~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 241 ------MVSE-AAATGKPVYVLPLPG 259 (311)
T ss_pred ------HHHH-HHHcCCCEEEecCCC
Confidence 3333 445679999986554
No 284
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=40.72 E-value=50 Score=27.63 Aligned_cols=67 Identities=13% Similarity=0.252 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCCceEEEcchH--HHHHh--hcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCc
Q 045642 240 HILAKELDKKGLKAIVITDSA--VFAMI--SRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTH 311 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Dsa--v~~~m--~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~ 311 (406)
+.++.+|.+.|..|..+.+.. ...+. .++..|++..| +.--....-..-.+-.+.+++||+++++..
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-----~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-----GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-----HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-----cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 467788888888888886654 33433 35788888877 111112222233355666899999999854
No 285
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=40.70 E-value=1.2e+02 Score=26.93 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=51.2
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeE
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav 278 (406)
.|..|+..|.+..-.+-++...+.|...+|| .|... .+|.+.+ .+++..+.--..-+..++.|+...+-
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI----sp~~~-----~~l~~l~-~i~~~~~~~~~~dl~~a~lViaaT~d- 80 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVV----SPEIC-----KEMKELP-YITWKQKTFSNDDIKDAHLIYAATNQ- 80 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEE----cCccC-----HHHHhcc-CcEEEecccChhcCCCceEEEECCCC-
Confidence 5778999999988888877777666665555 24422 2222222 23333322222234556666665432
Q ss_pred eeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 279 MANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 279 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
.-+| ..++..|+.+ .||.++.
T Consensus 81 ----~e~N----~~i~~~a~~~-~~vn~~d 101 (157)
T PRK06719 81 ----HAVN----MMVKQAAHDF-QWVNVVS 101 (157)
T ss_pred ----HHHH----HHHHHHHHHC-CcEEECC
Confidence 2233 5677788874 6887553
No 286
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=40.66 E-value=1.9e+02 Score=26.57 Aligned_cols=94 Identities=22% Similarity=0.215 Sum_probs=57.7
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEe---cCCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHhhc-CCEEEEcce
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFE-GHILAKELDKKGLKAIVITDSAVFAMISR-VNMVIVGVH 276 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m~~-vd~VllGAd 276 (406)
.|| -|.|..=..+|+.+ |-.|+|+-. |..+..+ -..++..|+..+- ..+..+ -+.+|+|||
T Consensus 5 lIL-AS~SprR~elL~~~---g~~f~v~~~~idE~~~~~~~p~~~~~~lA~~Ka----------~~v~~~~~~~~vI~aD 70 (183)
T TIGR00172 5 LIL-ASQSPRRKELLEEL---GISFEQIVSEFDEKSLKTTSPRELVYRLAKEKA----------QAVAELLADALIIGAD 70 (183)
T ss_pred EEE-eCCCHHHHHHHHHC---CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHhCCCCEEEEeC
Confidence 444 35565555566654 578987754 3332222 2577777776541 112222 356999999
Q ss_pred eEee-CCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 277 AVMA-NGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 277 av~~-nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
.|.. ||.++.|-.+..-| ++-+..|....|.+.
T Consensus 71 TvV~~~g~ilgKP~~~~eA~~~L~~lsG~~h~V~Tg 106 (183)
T TIGR00172 71 TVVILDGEIYGKPKDKEEAAEFLRKLSGQEHEVYTA 106 (183)
T ss_pred eEEEECCEEecCCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 9654 88899999998776 456666666655543
No 287
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=40.55 E-value=2e+02 Score=28.35 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=67.4
Q ss_pred HHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCc--------------ch----HHHHHHHHhCC-
Q 045642 190 AEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKF--------------EG----HILAKELDKKG- 250 (406)
Q Consensus 190 ~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~--------------eG----~~~a~~L~~~G- 250 (406)
+..+.+.+. +..||..|....=..+++.....|-+ ++.+.+..+-. -| ...++.|++.+
T Consensus 10 G~eaq~kL~-~s~VLIvG~gGLG~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp 87 (286)
T cd01491 10 GHEAMKKLQ-KSNVLISGLGGLGVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNP 87 (286)
T ss_pred CHHHHHHHh-cCcEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCC
Confidence 334445553 45688888888777777777767754 56666655421 13 24566777654
Q ss_pred -CceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 251 -LKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 251 -I~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
++++.+...-....+.+.|.||...+.+-. -..+.-+|+.+++||+...
T Consensus 88 ~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~~---------~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 88 YVPVTVSTGPLTTDELLKFQVVVLTDASLED---------QLKINEFCHSPGIKFISAD 137 (286)
T ss_pred CCEEEEEeccCCHHHHhcCCEEEEecCCHHH---------HHHHHHHHHHcCCEEEEEe
Confidence 666666654334567889988877553211 1235568899999999753
No 288
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=40.51 E-value=69 Score=35.50 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=36.1
Q ss_pred ccChHHHHHHHHHHHHcCCceEEEEecCCCCcch--HHHHHHHHhCCCceEEEc
Q 045642 206 LGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG--HILAKELDKKGLKAIVIT 257 (406)
Q Consensus 206 ~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG--~~~a~~L~~~GI~vt~I~ 257 (406)
.+..+-+.+.|..|+++|+..+|+|==-+=..|+ ...|+.|.++|+.|.|-.
T Consensus 367 ~~~~s~ii~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa~~le~aG~~viyg~ 420 (672)
T TIGR03705 367 TSKDSPIIDALIEAAENGKEVTVVVELKARFDEEANIRWARRLEEAGVHVVYGV 420 (672)
T ss_pred ecCCcHHHHHHHHHHHcCCEEEEEEEehhhccchhhHHHHHHHHHcCCEEEEcC
Confidence 4544566677888887999888877422222233 577899999999998844
No 289
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=40.41 E-value=50 Score=30.37 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEE-cceeEeeCCCcccccchHHHHHH--HhhCCCceEEecCCccccc
Q 045642 240 HILAKELDKKGLKAIVITDSAVFAMISRVNMVIV-GVHAVMANGGVIAPAGLHVLALA--AKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~Vll-GAdav~~nG~vvnk~GT~~lAl~--Ak~~~vPv~V~aes~K~~~ 315 (406)
+.+.+.|.+.|+++.++.+.. -+.++|.+|+ |..+...........|- ..++. +...++||+-+|--+-+.-
T Consensus 13 ~~v~~~l~~~g~~~~~~~~~~---~l~~~d~lilPG~g~~~~~~~~l~~~~~-~~~l~~~~~~~~~pvlGiC~G~Q~l~ 87 (201)
T PRK13152 13 NSVAKAFEKIGAINFIAKNPK---DLQKADKLLLPGVGSFKEAMKNLKELGF-IEALKEQVLVQKKPILGICLGMQLFL 87 (201)
T ss_pred HHHHHHHHHCCCeEEEECCHH---HHcCCCEEEECCCCchHHHHHHHHHcCc-HHHHHHHHHhCCCcEEEECHhHHHHh
Confidence 577888888899988887754 2356888777 32222222222223342 23332 2356899999987666543
No 290
>PRK14367 Maf-like protein; Provisional
Probab=40.35 E-value=1.5e+02 Score=27.66 Aligned_cols=93 Identities=9% Similarity=0.103 Sum_probs=56.7
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEe---cCCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHh-----hcCCEEEEccee
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFE-GHILAKELDKKGLKAIVITDSAVFAMI-----SRVNMVIVGVHA 277 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m-----~~vd~VllGAda 277 (406)
|.|..=.++|..+ |-.|.|+.. |+.+..+ -..++..|+..+-. ++...+ ..-+.+|+|||.
T Consensus 8 S~SprR~eLL~~~---Gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~-------~v~~~~~~~~~~~~~~~vI~aDT 77 (202)
T PRK14367 8 SNSPRRMEILTQL---GYRVVKLPAGIDETVKAGETPARYVQRMAEEKNR-------TALTLFCETNGTMPDFPLITADT 77 (202)
T ss_pred CCCHHHHHHHHHC---CCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhhccccccCCCCEEEEeCc
Confidence 5555555555543 678887743 3333233 35677777765421 111111 124668999999
Q ss_pred Ee-eCCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 278 VM-ANGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 278 v~-~nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
|. -||.++.|-.+..-| ++.+..|.+.-|.+.
T Consensus 78 vV~~dg~IlgKP~~~eeA~~~L~~lsG~~h~V~Tg 112 (202)
T PRK14367 78 CVVSDGIILGKPRSQAEAIEFLNRLSGKQHTVLTA 112 (202)
T ss_pred EEEECCEEecCCCCHHHHHHHHHHhCCCCeEEEEE
Confidence 65 899999999988766 566667776666543
No 291
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=40.34 E-value=3.7e+02 Score=26.46 Aligned_cols=99 Identities=14% Similarity=0.166 Sum_probs=48.4
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH-HHHHHH-HhCCCceEEEcch--------HHHHHhhcCCE
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH-ILAKEL-DKKGLKAIVITDS--------AVFAMISRVNM 270 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~-~~a~~L-~~~GI~vt~I~Ds--------av~~~m~~vd~ 270 (406)
.+++|.|.+..+..++....+ ..-+|++.. +.+.+. ...+.+ ...|+++.+++-. .+...+..-.+
T Consensus 64 ~v~~~~g~t~al~~~~~~~~~--~gd~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~ 139 (376)
T TIGR01977 64 HVVFTNNATTALNIALKGLLK--EGDHVITTP--MEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTK 139 (376)
T ss_pred eEEEeCCHHHHHHHHHHhccC--CCCEEEECc--chhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCe
Confidence 466776766666665554332 334666654 333332 222233 3348888777421 12222221123
Q ss_pred EEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 271 VIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 271 VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+++-.+.-...|.+.. . -.++-+|++++++|+|
T Consensus 140 ~v~~~~~~n~tG~~~~-~--~~i~~l~~~~~~~liv 172 (376)
T TIGR01977 140 LIVVSHASNVTGTILP-I--EEIGELAQENGIFFIL 172 (376)
T ss_pred EEEEECCCCCccccCC-H--HHHHHHHHHcCCEEEE
Confidence 3333222223344332 2 2477788999988876
No 292
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=40.20 E-value=3.9e+02 Score=26.59 Aligned_cols=102 Identities=18% Similarity=0.280 Sum_probs=52.9
Q ss_pred CcEEEeccChHHHHHHHHHHHH-cCCceEEEEecCCCCcchHHH-HHHHHh-----CC-----CceEEEc--c-hHHHHH
Q 045642 200 NEVILTLGHSKFVKEFLCAAKE-KKRSFEVFIADGAPKFEGHIL-AKELDK-----KG-----LKAIVIT--D-SAVFAM 264 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~-~~~~f~ViV~EsrP~~eG~~~-a~~L~~-----~G-----I~vt~I~--D-sav~~~ 264 (406)
..++++.|.|..++..++.|.. .|+ -+|++.+.. +.|... +..+.. .+ .++..++ | ..+...
T Consensus 87 ~~~~~~~sG~~a~~~A~~~a~~~~g~-~~vi~~~~~--~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 163 (377)
T PRK02936 87 DLVFFCNSGAEANEAALKLARKHTGK-SKIVTFEQS--FHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEV 163 (377)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHhcCC-CeEEEECCC--cCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHh
Confidence 3577888889999999987653 333 356666433 333211 111111 01 1233443 3 233333
Q ss_pred hh-cCCEEEEcceeEeeCCCccc-ccc-hHHHHHHHhhCCCceEE
Q 045642 265 IS-RVNMVIVGVHAVMANGGVIA-PAG-LHVLALAAKKHDVPFVV 306 (406)
Q Consensus 265 m~-~vd~VllGAdav~~nG~vvn-k~G-T~~lAl~Ak~~~vPv~V 306 (406)
+. ++..|++ +.+..+||++- ..+ =-.+.-+|++|++++++
T Consensus 164 ~~~~~~~ii~--e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~ 206 (377)
T PRK02936 164 MNEEVAAVML--EVVQGEGGVIPADPAFLQEVQTLCKKFGALLII 206 (377)
T ss_pred ccCCeEEEEE--ecccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 32 3333333 45666666542 222 23456689999999874
No 293
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=40.03 E-value=1.7e+02 Score=27.34 Aligned_cols=69 Identities=16% Similarity=0.282 Sum_probs=39.3
Q ss_pred EEEeccChHHHHHHHHHHHHcCC-ceEE-EEecCCCCcchHHHHHHHHhCCCceEEEc----------chHHHHHhh--c
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKR-SFEV-FIADGAPKFEGHILAKELDKKGLKAIVIT----------DSAVFAMIS--R 267 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~-~f~V-iV~EsrP~~eG~~~a~~L~~~GI~vt~I~----------Dsav~~~m~--~ 267 (406)
.||.-|..+.++.++.. .+++. +.+| .|.-++|...+...|+ +.||++..+. +..+...++ +
T Consensus 3 ~vl~Sg~Gsn~~al~~~-~~~~~l~~~i~~visn~~~~~~~~~A~---~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~ 78 (207)
T PLN02331 3 AVFVSGGGSNFRAIHDA-CLDGRVNGDVVVVVTNKPGCGGAEYAR---ENGIPVLVYPKTKGEPDGLSPDELVDALRGAG 78 (207)
T ss_pred EEEEeCCChhHHHHHHH-HHcCCCCeEEEEEEEeCCCChHHHHHH---HhCCCEEEeccccCCCcccchHHHHHHHHhcC
Confidence 35655555555555444 44553 4444 4556678877755444 4599998754 334444454 3
Q ss_pred CCEEEEc
Q 045642 268 VNMVIVG 274 (406)
Q Consensus 268 vd~VllG 274 (406)
+|.+++.
T Consensus 79 ~Dliv~a 85 (207)
T PLN02331 79 VDFVLLA 85 (207)
T ss_pred CCEEEEe
Confidence 7777773
No 294
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.00 E-value=2.1e+02 Score=29.61 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=40.1
Q ss_pred ccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHH---HHHhhcCCEEEEcc
Q 045642 206 LGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAV---FAMISRVNMVIVGV 275 (406)
Q Consensus 206 ~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav---~~~m~~vd~VllGA 275 (406)
.|.|..- ..+.+.++| .+|.+.|.++...-..+...|.+.||.+..-.+... .....+.|.|++++
T Consensus 8 ~G~sG~s--~a~~l~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 8 LGRSGIA--AARLLKAQG--WEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred cCHHHHH--HHHHHHHCC--CEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 4444433 233344344 689999988765434555678888988866443331 13456789888854
No 295
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=39.97 E-value=2.1e+02 Score=30.20 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=46.9
Q ss_pred hHHHHHHHHhCCCceEEEcch--------HHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhh----CCCceEE
Q 045642 239 GHILAKELDKKGLKAIVITDS--------AVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKK----HDVPFVV 306 (406)
Q Consensus 239 G~~~a~~L~~~GI~vt~I~Ds--------av~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~----~~vPv~V 306 (406)
....|+.|.+.||++++|.-. .+-...++...|+ ++.+|....-.|+...+.++.+ ...||.-
T Consensus 355 Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~vv-----tvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~r 429 (464)
T PRK11892 355 ALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRLV-----TVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLR 429 (464)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCeEE-----EEeCCCcCCcHHHHHHHHHHHhCccccCCCeEE
Confidence 345566777778877777433 3445556676664 3567777777999999988887 3678887
Q ss_pred ecCCccc
Q 045642 307 VASTHEL 313 (406)
Q Consensus 307 ~aes~K~ 313 (406)
++-.-.|
T Consensus 430 i~~~d~~ 436 (464)
T PRK11892 430 VTGKDVP 436 (464)
T ss_pred eccCCcc
Confidence 7654333
No 296
>PRK05957 aspartate aminotransferase; Provisional
Probab=39.91 E-value=3.2e+02 Score=27.45 Aligned_cols=93 Identities=15% Similarity=0.299 Sum_probs=51.8
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch--------HHHHHhh-cCCE
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS--------AVFAMIS-RVNM 270 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds--------av~~~m~-~vd~ 270 (406)
..+++|.|.+..+..++....+.| =+|++. .|.+.+...+ +...|+.+.+++.. .+-..+. +...
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~~~~g--d~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~kl 163 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAITDPG--DEIILN--TPYYFNHEMA--ITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRA 163 (389)
T ss_pred CeEEEeCChHHHHHHHHHHhcCCC--CEEEEe--CCCCcCHHHH--HHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceE
Confidence 346777777666665555544333 245553 5776665332 34678888776432 1222222 3333
Q ss_pred EEEcceeEeeCCCcccccchH-------HHHHHHhhCCCceEE
Q 045642 271 VIVGVHAVMANGGVIAPAGLH-------VLALAAKKHDVPFVV 306 (406)
Q Consensus 271 VllGAdav~~nG~vvnk~GT~-------~lAl~Ak~~~vPv~V 306 (406)
|++. ..-|..|+. .++-.|+.+++.+++
T Consensus 164 v~~~--------~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~ 198 (389)
T PRK05957 164 IVTI--------SPNNPTGVVYPEALLRAVNQICAEHGIYHIS 198 (389)
T ss_pred EEEe--------CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 3321 245777754 367778999988775
No 297
>PRK09191 two-component response regulator; Provisional
Probab=39.79 E-value=2.6e+02 Score=25.89 Aligned_cols=93 Identities=18% Similarity=0.331 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHH---cCCceEEEEecCCCCcchHHHHHHHHhCCCceEE-EcchH--HHHHh-hcCCEEEEcceeEeeCC
Q 045642 210 KFVKEFLCAAKE---KKRSFEVFIADGAPKFEGHILAKELDKKGLKAIV-ITDSA--VFAMI-SRVNMVIVGVHAVMANG 282 (406)
Q Consensus 210 ~tV~~~L~~A~~---~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~-I~Dsa--v~~~m-~~vd~VllGAdav~~nG 282 (406)
++|...+..|.+ +....+|++++..|... ..+...|...|+.+.. ..++. ...+. ...|.|++..+ +.+|
T Consensus 119 ~tV~~~l~ra~~~l~~~~~~~~liidd~~~~~-~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~--~~~~ 195 (261)
T PRK09191 119 AEAEALLDDARAEIARQVATRVLIIEDEPIIA-MDLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQ--LADG 195 (261)
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEcCcHHHH-HHHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecC--CCCC
Confidence 467777766654 23456788888776533 2456677788988773 44433 22222 23788888654 2221
Q ss_pred CcccccchHHHHHHHhhCCCceEEecC
Q 045642 283 GVIAPAGLHVLALAAKKHDVPFVVVAS 309 (406)
Q Consensus 283 ~vvnk~GT~~lAl~Ak~~~vPv~V~ae 309 (406)
.-|.-.+..+.+..++|++++++
T Consensus 196 ----~~g~e~l~~l~~~~~~pii~ls~ 218 (261)
T PRK09191 196 ----SSGIDAVNDILKTFDVPVIFITA 218 (261)
T ss_pred ----CCHHHHHHHHHHhCCCCEEEEeC
Confidence 12333344444444899999875
No 298
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=39.75 E-value=90 Score=31.32 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=44.6
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc-hHHHHHhh--cCCEEEEcceeE
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD-SAVFAMIS--RVNMVIVGVHAV 278 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D-sav~~~m~--~vd~VllGAdav 278 (406)
.||.+|.+..-..+...|.+. .++|++++..|..-+..+|. .-+..- ..| .++..+.+ ++|.|+.+.+.+
T Consensus 1 kililG~g~~~~~l~~aa~~~--G~~v~~~d~~~~~~~~~~ad----~~~~~~-~~d~~~l~~~~~~~~id~v~~~~e~v 73 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAH----RSYVIN-MLDGDALRAVIEREKPDYIVPEIEAI 73 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCCCCchhhhCc----eEEEcC-CCCHHHHHHHHHHhCCCEEEeccCcc
Confidence 377888887777777777654 67899999998876654332 111111 123 23444444 589888887665
Q ss_pred e
Q 045642 279 M 279 (406)
Q Consensus 279 ~ 279 (406)
.
T Consensus 74 ~ 74 (380)
T TIGR01142 74 A 74 (380)
T ss_pred C
Confidence 3
No 299
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=39.74 E-value=2.1e+02 Score=23.41 Aligned_cols=37 Identities=30% Similarity=0.308 Sum_probs=28.8
Q ss_pred chHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEc
Q 045642 238 EGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVG 274 (406)
Q Consensus 238 eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllG 274 (406)
+-..+++.+.+.|+++..|++..-..+-+-+|.++.-
T Consensus 75 ~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~ 111 (139)
T cd05013 75 ETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLV 111 (139)
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEc
Confidence 3467888999999999999998766666667777754
No 300
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=39.55 E-value=23 Score=35.81 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=31.1
Q ss_pred ccChHHHHHHHHHHHHcCCceEEEEe-cCCCCcch-HHHHHHHHhCCCceEEEc
Q 045642 206 LGHSKFVKEFLCAAKEKKRSFEVFIA-DGAPKFEG-HILAKELDKKGLKAIVIT 257 (406)
Q Consensus 206 ~g~S~tV~~~L~~A~~~~~~f~ViV~-EsrP~~eG-~~~a~~L~~~GI~vt~I~ 257 (406)
.+.-|-+.+.|..|+++||+.+|+|= -.|=.-+- ..-|+.|.++|+.|.|-.
T Consensus 46 ~a~~S~iv~aLi~AA~nGK~Vtv~vELkARFDEe~Ni~Wa~~Le~aGv~ViyG~ 99 (352)
T PF13090_consen 46 VASNSPIVNALIEAAENGKQVTVLVELKARFDEENNIHWAKRLEEAGVHVIYGV 99 (352)
T ss_dssp S-TT-HHHHHHHHHHHTT-EEEEEESTTSSSTTCCCCCCCHHHHHCT-EEEE--
T ss_pred cCCCCHHHHHHHHHHHcCCEEEEEEEEeccccHHHHhHHHhhHHhcCeEEEcCC
Confidence 35555666677777779998887762 23322222 467899999999988753
No 301
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=39.47 E-value=71 Score=28.88 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=40.5
Q ss_pred HHHHHHHhCCCceEEEcchHHH-HHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecC
Q 045642 241 ILAKELDKKGLKAIVITDSAVF-AMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVAS 309 (406)
Q Consensus 241 ~~a~~L~~~GI~vt~I~Dsav~-~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ae 309 (406)
.+++.|.. |+.|.++.-..+. .-+..+|.||+|+-. . .|.....+..+.--......++||.+++-
T Consensus 20 ~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi-~-~G~~~~~~~~fl~~~~~~l~~K~v~~F~v 86 (177)
T PRK11104 20 YIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASI-R-YGHFHSALYKFVKKHATQLNQMPSAFFSV 86 (177)
T ss_pred HHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECcc-c-cCCcCHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 34455555 7777765443321 235679999999844 3 45555555555444445567899998873
No 302
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=39.41 E-value=2.6e+02 Score=27.08 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=32.5
Q ss_pred HHHHHHHhCCCc-eEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 241 ILAKELDKKGLK-AIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 241 ~~a~~L~~~GI~-vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
.+.+.+.+.|+. +......-+..+|+.+|.++.- .|+ ...+=|-..|+|+++.
T Consensus 223 ~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v~~-------------~g~-~~l~Ea~~~g~Pvv~~ 276 (348)
T TIGR01133 223 KVKNVYQELGIEAIVTFIDENMAAAYAAADLVISR-------------AGA-STVAELAAAGVPAILI 276 (348)
T ss_pred HHHHHHhhCCceEEecCcccCHHHHHHhCCEEEEC-------------CCh-hHHHHHHHcCCCEEEe
Confidence 344445556653 2222333678899999988852 231 2444677789999986
No 303
>PRK15005 universal stress protein F; Provisional
Probab=39.24 E-value=96 Score=26.01 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=23.8
Q ss_pred cCCEEEEcceeEeeCCCccc-ccchHHHHHHHhhCCCceEEe
Q 045642 267 RVNMVIVGVHAVMANGGVIA-PAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~vvn-k~GT~~lAl~Ak~~~vPv~V~ 307 (406)
++|+|++|++. . ++.. -.||- ..-+.++..+||+|+
T Consensus 107 ~~DLIV~Gs~~---~-~~~~~llGS~-a~~vl~~a~cpVlvV 143 (144)
T PRK15005 107 PADMIIIASHR---P-DITTYLLGSN-AAAVVRHAECSVLVV 143 (144)
T ss_pred CCCEEEEeCCC---C-Cchheeecch-HHHHHHhCCCCEEEe
Confidence 68999999873 2 3332 34663 344577788999886
No 304
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=39.22 E-value=1.7e+02 Score=26.47 Aligned_cols=73 Identities=25% Similarity=0.291 Sum_probs=40.9
Q ss_pred CcEEEeccChHHHHHHHHH-HHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cch----HHHHHhh-------
Q 045642 200 NEVILTLGHSKFVKEFLCA-AKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TDS----AVFAMIS------- 266 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~-A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~Ds----av~~~m~------- 266 (406)
+.+||..|.|+.+=..|.+ ..++| .+|+++...|. ....+...+...|.+++.+ .|- ++..++.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g--~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG--AKVVIYDSNEE-AAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCChh-HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4577778877766555543 34344 45777765543 3345566777677655443 232 2333333
Q ss_pred cCCEEEEcc
Q 045642 267 RVNMVIVGV 275 (406)
Q Consensus 267 ~vd~VllGA 275 (406)
.+|.|+..|
T Consensus 82 ~id~vi~~a 90 (246)
T PRK05653 82 ALDILVNNA 90 (246)
T ss_pred CCCEEEECC
Confidence 357777766
No 305
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=39.13 E-value=2.2e+02 Score=25.77 Aligned_cols=88 Identities=19% Similarity=0.306 Sum_probs=48.2
Q ss_pred HHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEE
Q 045642 192 QAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMV 271 (406)
Q Consensus 192 ~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~V 271 (406)
++..++-.|..+++.||..+=..+=+.++. ..-+|+|+|..|.. +-+-...|.++.- +....+.+|.+
T Consensus 15 r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~--~Ga~V~V~e~DPi~-----alqA~~dGf~v~~-----~~~a~~~adi~ 82 (162)
T PF00670_consen 15 RATNLMLAGKRVVVIGYGKVGKGIARALRG--LGARVTVTEIDPIR-----ALQAAMDGFEVMT-----LEEALRDADIF 82 (162)
T ss_dssp HHH-S--TTSEEEEE--SHHHHHHHHHHHH--TT-EEEEE-SSHHH-----HHHHHHTT-EEE------HHHHTTT-SEE
T ss_pred hcCceeeCCCEEEEeCCCcccHHHHHHHhh--CCCEEEEEECChHH-----HHHhhhcCcEecC-----HHHHHhhCCEE
Confidence 345566689999999998776666666653 34789999999942 2233347888764 33456788877
Q ss_pred EE--cceeE--------eeCCCcccccchH
Q 045642 272 IV--GVHAV--------MANGGVIAPAGLH 291 (406)
Q Consensus 272 ll--GAdav--------~~nG~vvnk~GT~ 291 (406)
+. |.-.| +.||.++..+|.+
T Consensus 83 vtaTG~~~vi~~e~~~~mkdgail~n~Gh~ 112 (162)
T PF00670_consen 83 VTATGNKDVITGEHFRQMKDGAILANAGHF 112 (162)
T ss_dssp EE-SSSSSSB-HHHHHHS-TTEEEEESSSS
T ss_pred EECCCCccccCHHHHHHhcCCeEEeccCcC
Confidence 75 33222 3455555555553
No 306
>PRK14368 Maf-like protein; Provisional
Probab=38.91 E-value=2e+02 Score=26.61 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=59.3
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEe---cCCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHhh-cCCEEEEcc
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFE-GHILAKELDKKGLKAIVITDSAVFAMIS-RVNMVIVGV 275 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m~-~vd~VllGA 275 (406)
..|| -|.|..=.++|+.+ |-.|+|+.. |+.+..+ -..++..|+..+- -.+.. .-+.+|+||
T Consensus 6 ~lIL-AS~SprR~eLL~~~---g~~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA----------~~v~~~~~~~~vI~a 71 (193)
T PRK14368 6 PIVL-ASASPRRSELLASA---GIEFDVVPADIPEEPLPGEEPVDHVLRLAREKA----------RAAAALAEGRFFIGA 71 (193)
T ss_pred cEEE-eCCCHHHHHHHHHC---CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHhCCCCEEEEe
Confidence 3444 35666656666554 578988854 3333333 3577777776441 11222 237899999
Q ss_pred eeEe-eCCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 276 HAVM-ANGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 276 dav~-~nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
|.|. -||.++.|-.+..=| ++-+..|.+.-|.+.
T Consensus 72 DTvV~~~g~ilgKP~~~~eA~~~L~~lsG~~h~v~Tg 108 (193)
T PRK14368 72 DTIVVCDGEIMGKPKDEADAVRMLKKLSGVPHEVITG 108 (193)
T ss_pred CcEEEECCEEecCCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 9965 788899999998776 455566666555443
No 307
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=38.89 E-value=52 Score=31.29 Aligned_cols=54 Identities=19% Similarity=0.173 Sum_probs=40.6
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCc----eEEEEecCCCCcchHHHHHHHHhCCCceEEEcchH
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRS----FEVFIADGAPKFEGHILAKELDKKGLKAIVITDSA 260 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~----f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsa 260 (406)
+--++|+..|.+|+.|+..+...+.. ..|++. |..+++.|.+.|+.+.+.++..
T Consensus 175 ~~d~v~ftS~~~v~~~~~~~~~~~~~~~~~~~v~~I-------G~~Ta~~l~~~G~~~~~~~~~~ 232 (248)
T COG1587 175 EVDAVVFTSSSAVRALLALAPESGIEFLERKRVASI-------GPRTAETLKELGITVDIAAEKP 232 (248)
T ss_pred CCCEEEEeCHHHHHHHHHHccccchhHhhCceEEEe-------cHHHHHHHHHcCCcceeccccc
Confidence 34477788899999999999865542 445554 8899999999998876555543
No 308
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=38.88 E-value=38 Score=27.64 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=51.2
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeE
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav 278 (406)
.|..||..|.+....+-++...+.|.+.+|+-.+. ...+ ..+ ++....- ...+..+++|+...+-
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-------~~~~----~~i--~~~~~~~-~~~l~~~~lV~~at~d- 70 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-------EFSE----GLI--QLIRREF-EEDLDGADLVFAATDD- 70 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-------HHHH----TSC--EEEESS--GGGCTTESEEEE-SS--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-------hhhh----hHH--HHHhhhH-HHHHhhheEEEecCCC-
Confidence 46788888988888888888876665555544443 1111 122 2333322 2336667776665432
Q ss_pred eeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 279 MANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 279 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
..-.-.++..|+..++||.++-
T Consensus 71 --------~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 71 --------PELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp --------HHHHHHHHHHHHHTTSEEEETT
T ss_pred --------HHHHHHHHHHHhhCCEEEEECC
Confidence 2233568889999999999863
No 309
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=38.81 E-value=2e+02 Score=29.22 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=42.0
Q ss_pred HHHHHHhCCCceEEEcch--------HHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhC----CCceEEecC
Q 045642 242 LAKELDKKGLKAIVITDS--------AVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKH----DVPFVVVAS 309 (406)
Q Consensus 242 ~a~~L~~~GI~vt~I~Ds--------av~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~----~vPv~V~ae 309 (406)
.++.|.+.||++++|.-. .+...++++..|++ +.++....-.|+...+.++... .+|+.-++-
T Consensus 251 Aa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~Ivv-----vEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~ 325 (355)
T PTZ00182 251 AAEELAKEGISCEVIDLRSLRPWDRETIVKSVKKTGRCVI-----VHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCG 325 (355)
T ss_pred HHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcCCEEEE-----EEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCC
Confidence 344444455555544221 34455667777755 5566666678888888887775 678887765
Q ss_pred Cccccc
Q 045642 310 THELCS 315 (406)
Q Consensus 310 s~K~~~ 315 (406)
.-.|.|
T Consensus 326 ~d~~~p 331 (355)
T PTZ00182 326 ADTPFP 331 (355)
T ss_pred CCccCC
Confidence 544443
No 310
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.74 E-value=1.9e+02 Score=26.61 Aligned_cols=74 Identities=24% Similarity=0.272 Sum_probs=39.4
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc----hHHHHHhh-------cC
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD----SAVFAMIS-------RV 268 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D----sav~~~m~-------~v 268 (406)
.+||..|.|+.+-..|..... .+..+|+++..++..........+...+.++.++ .| ..+..++. ++
T Consensus 3 k~vlItG~sg~iG~~la~~L~-~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALA-AAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRI 81 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHH-HCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 357777777766665544432 2245777776554333345556666555554443 22 23333333 46
Q ss_pred CEEEEcc
Q 045642 269 NMVIVGV 275 (406)
Q Consensus 269 d~VllGA 275 (406)
|.||-.|
T Consensus 82 d~vi~~a 88 (256)
T PRK12745 82 DCLVNNA 88 (256)
T ss_pred CEEEECC
Confidence 7776654
No 311
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=38.73 E-value=3.4e+02 Score=25.53 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=52.4
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCC----cchHHHHHHHHhCC-CceEEEc-chHH--HHHhhc---
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPK----FEGHILAKELDKKG-LKAIVIT-DSAV--FAMISR--- 267 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~----~eG~~~a~~L~~~G-I~vt~I~-Dsav--~~~m~~--- 267 (406)
.|-+|.+ |.-.-|-.....++.+.....|.|+-+.-. .+-+.+.+++.+.| +=++-.+ +... ..++.|
T Consensus 73 ~g~~IVS-G~A~GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~~i~~~gglliSe~p~~~~~~~~~f~~RNri 151 (220)
T TIGR00732 73 NGVTIVS-GLALGIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGLLLSEYPPDTKPIKYNFPKRNRI 151 (220)
T ss_pred CCCEEEc-CchhhHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHHHHHHcCCEEEEecCCCCCCCcccHHHHHHH
Confidence 4555554 544444443333322333456666654321 13356677777666 4333332 2211 111211
Q ss_pred ----CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 268 ----VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 268 ----vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
.+.||+ ++.| -+.||...|-.|...|+|||++
T Consensus 152 ia~ls~~viv-----ve~~---~~sGtl~ta~~A~~~gr~v~~~ 187 (220)
T TIGR00732 152 ISGLSRAVLV-----VEAP---LKSGALITARYALEQGREVFAY 187 (220)
T ss_pred HHHhcCEEEE-----EECC---CCCchHHHHHHHHHhCCcEEEE
Confidence 333332 2222 3689999999999999999997
No 312
>PLN02822 serine palmitoyltransferase
Probab=38.69 E-value=4.9e+02 Score=27.41 Aligned_cols=133 Identities=16% Similarity=0.228 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHH----------H---HHHHHHHHHHHHHHHHhcccCc-EEEeccChHHHHHHHHHHHHcCCceEEEE
Q 045642 165 KKLKSELIKAVNEL----------I---EDINTCREGIAEQAMELIHQNE-VILTLGHSKFVKEFLCAAKEKKRSFEVFI 230 (406)
Q Consensus 165 ~~~k~~l~~~i~~~----------~---~e~~~~~~~I~~~a~~~I~~g~-~ILT~g~S~tV~~~L~~A~~~~~~f~ViV 230 (406)
+++++.+.+.++.+ . +-.....+.|++ ++...+ ++++.|++ +...++.... ++. .+++
T Consensus 126 ~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~----~~~~~~~i~~s~G~~-a~~sai~a~~--~~g-d~Ii 197 (481)
T PLN02822 126 EKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAK----FLGTPDSILYSYGLS-TIFSVIPAFC--KKG-DIIV 197 (481)
T ss_pred HHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHH----HhCCCCEEEECCHHH-HHHHHHHHhC--CCC-CEEE
Confidence 77888888888773 1 113333444444 444444 45555555 5666555443 333 3444
Q ss_pred ecCCCCcchH-HHHHHHHhCCCceEEEcch---HHHHHhhcC---------CEEEEcceeEeeCCCcccccchHHHHHHH
Q 045642 231 ADGAPKFEGH-ILAKELDKKGLKAIVITDS---AVFAMISRV---------NMVIVGVHAVMANGGVIAPAGLHVLALAA 297 (406)
Q Consensus 231 ~EsrP~~eG~-~~a~~L~~~GI~vt~I~Ds---av~~~m~~v---------d~VllGAdav~~nG~vvnk~GT~~lAl~A 297 (406)
.+.. ..+. .-+-.| .|-.+.++.-+ .....+.++ ...++=.+.++.|.|.+... -.++-+|
T Consensus 198 ~d~~--~H~s~~~~~~l--s~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L--~~i~~l~ 271 (481)
T PLN02822 198 ADEG--VHWGIQNGLYL--SRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPL--DEIVRLK 271 (481)
T ss_pred EeCC--ccHHHHHHHHH--cCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCH--HHHHHHH
Confidence 5533 2221 122233 35566666422 222333221 11344467888887777773 5677789
Q ss_pred hhCCCceEEecCCcc
Q 045642 298 KKHDVPFVVVASTHE 312 (406)
Q Consensus 298 k~~~vPv~V~aes~K 312 (406)
++|++.+++ =|.|-
T Consensus 272 ~k~~~~LIv-DEa~s 285 (481)
T PLN02822 272 EKYRFRVLL-DESNS 285 (481)
T ss_pred HHcCCEEEE-ECCcc
Confidence 999998874 44443
No 313
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=38.67 E-value=1.4e+02 Score=28.72 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=44.7
Q ss_pred eccChHHHHHHHHHHHHc-CCce---EEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEee
Q 045642 205 TLGHSKFVKEFLCAAKEK-KRSF---EVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMA 280 (406)
Q Consensus 205 T~g~S~tV~~~L~~A~~~-~~~f---~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~ 280 (406)
+.-++..+.+.+.+++++ +.++ .||+.-+.|.++-..-.+.++.. |||+|
T Consensus 128 ~~~~d~~L~~~~~~~a~~~g~~~~~ggvy~~~~Gp~fet~ae~~~~~~~------------------------gad~V-- 181 (261)
T PRK08666 128 TDPYCPELRKALITAARELGLTYHPGGTYVCTEGPRFETAAEIRMFRIL------------------------GGDLV-- 181 (261)
T ss_pred CcccCHHHHHHHHHHHHHCCCceEeccEEEEeeCCCcCCHHHHHHHHHc------------------------CCCEE--
Confidence 445566666666555532 3332 35677778887764222222221 44444
Q ss_pred CCCcccccchHHHHHHHhhCCCceEEecC
Q 045642 281 NGGVIAPAGLHVLALAAKKHDVPFVVVAS 309 (406)
Q Consensus 281 nG~vvnk~GT~~lAl~Ak~~~vPv~V~ae 309 (406)
-+-+.+.+.+|+++++||.+++-
T Consensus 182 ------~Me~~~e~~~A~~~gi~~~~i~~ 204 (261)
T PRK08666 182 ------GMTQVPEAVLARELEMCYATVAI 204 (261)
T ss_pred ------ccchHHHHHHHHHCCCcEEEEEE
Confidence 34578899999999999999853
No 314
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=38.64 E-value=3.5e+02 Score=28.38 Aligned_cols=118 Identities=17% Similarity=0.218 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHhcc--cCcEEEeccChHHHHHHHHHHHH---cCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE
Q 045642 182 INTCREGIAEQAMELIH--QNEVILTLGHSKFVKEFLCAAKE---KKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI 256 (406)
Q Consensus 182 ~~~~~~~I~~~a~~~I~--~g~~ILT~g~S~tV~~~L~~A~~---~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I 256 (406)
++.+++.++ ++|. +.|+|+|-|.-....-+|+.... ++.+-+|+.+...-.+-+ .-++.|.+.|+.||++
T Consensus 87 ~E~aR~~VA----klInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~-~s~~~l~~~g~~Vt~l 161 (428)
T KOG1549|consen 87 VEAAREQVA----KLINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVL-DSCRALQEEGLEVTYL 161 (428)
T ss_pred HHHHHHHHH----HHhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchh-HHHHHHHhcCeEEEEe
Confidence 455555554 4674 34688887766666666665442 122225666655543332 4578899999999998
Q ss_pred cchHHHHHh-------hcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 257 TDSAVFAMI-------SRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 257 ~Dsav~~~m-------~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+-..-+..- =+-+-.+++.+.|..-=++++.+ --|+.+|+..+|.|++
T Consensus 162 pv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv--~EI~~icr~~~v~v~~ 216 (428)
T KOG1549|consen 162 PVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPV--KEIVKICREEGVQVHV 216 (428)
T ss_pred ccCccccccHHHHHHhcCCCceEEEEEecccCccccccH--HHHHHHhCcCCcEEEe
Confidence 755222111 13567778888877665665544 3477789999886655
No 315
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=38.50 E-value=3.6e+02 Score=27.47 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-H--------HHHHHHhcc-cCcEEEeccC--hHHHHHHHHHHHHcCCceEEEEec-CCCC
Q 045642 170 ELIKAVNELIEDINTCREG-I--------AEQAMELIH-QNEVILTLGH--SKFVKEFLCAAKEKKRSFEVFIAD-GAPK 236 (406)
Q Consensus 170 ~l~~~i~~~~~e~~~~~~~-I--------~~~a~~~I~-~g~~ILT~g~--S~tV~~~L~~A~~~~~~f~ViV~E-srP~ 236 (406)
.-++.+.++++|+....++ + -..+.+.+. +|.+|.+... +.++..+ .+.|-+ +|++.- -.|.
T Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~ilveg~~d~~~l~~lgi~g~~i~~s~~p~~~cad~i----i~~gi~-rVVi~~D~d~~ 79 (360)
T PRK14719 5 ESLEKLLLIIDDLKLLAEKGIPILVEGPNDILSLKNLKINANFITVSNTPVFQIADDL----IAENIS-EVILLTDFDRA 79 (360)
T ss_pred HHHHHHHHHHHHHHHhhhCCCEEEEEcchHHHHHHHcCCCCcEEEEeCCchHHHHHHH----HHcCCC-EEEEEECCCCC
Confidence 3456666666666654442 0 123444443 3565555332 2222222 223434 555544 4454
Q ss_pred cch--HHHHHHHHhCCCceEEEcchHHHHH
Q 045642 237 FEG--HILAKELDKKGLKAIVITDSAVFAM 264 (406)
Q Consensus 237 ~eG--~~~a~~L~~~GI~vt~I~Dsav~~~ 264 (406)
++| +.+.+.|.++||.|..+.-..+..+
T Consensus 80 G~~~~~~~~~~L~~aGi~V~~~l~~e~~~l 109 (360)
T PRK14719 80 GRVYAKNIMEEFQSRGIKVNNLIRKEIIKY 109 (360)
T ss_pred CCccchHHHHHHHHCCCEEEeehHHHHHHH
Confidence 444 4678999999999987766555444
No 316
>PRK12342 hypothetical protein; Provisional
Probab=38.31 E-value=2.2e+02 Score=27.57 Aligned_cols=93 Identities=15% Similarity=0.070 Sum_probs=60.4
Q ss_pred EEEeccChHHHHH-HHHHHHHcCCceEEEEecCCC-CcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEe
Q 045642 202 VILTLGHSKFVKE-FLCAAKEKKRSFEVFIADGAP-KFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVM 279 (406)
Q Consensus 202 ~ILT~g~S~tV~~-~L~~A~~~~~~f~ViV~EsrP-~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~ 279 (406)
+++|+|..+.-.. .+++|...|-.--|.+.+... +.....+|+.|+. ++-. . ..|.||.|..++-
T Consensus 55 tvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g~D~~ata~~La~-----------~i~~-~-~~DLVl~G~~s~D 121 (254)
T PRK12342 55 AALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAA-----------AIEK-I-GFDLLLFGEGSGD 121 (254)
T ss_pred EEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHH-----------HHHH-h-CCCEEEEcCCccc
Confidence 5788998765555 568787778765455543321 2233566777774 2222 1 4899999988877
Q ss_pred eCCCcccccchHHHHHHHhhCCCceEEecCCcccc
Q 045642 280 ANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELC 314 (406)
Q Consensus 280 ~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~ 314 (406)
.+.+.+ =+++|...+.|++-.+...++.
T Consensus 122 ~~tgqv-------g~~lA~~Lg~P~vt~v~~~~~~ 149 (254)
T PRK12342 122 LYAQQV-------GLLLGELLQLPVINAVSKIQRQ 149 (254)
T ss_pred CCCCCH-------HHHHHHHhCCCcEeeEEEEEEe
Confidence 665433 2578999999998877665553
No 317
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=38.20 E-value=1.9e+02 Score=29.67 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=39.2
Q ss_pred cchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 257 TDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 257 ~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
+-.++.+++..-+ +.-|+++.-|.|..-+|+-.---+|++|++|++|.
T Consensus 177 ~PPa~~~ll~~~~---~~idgfi~PGHVs~I~G~~~y~~l~~~y~~P~VVa 224 (369)
T TIGR00075 177 VPPAVEALLENPA---VQIDAFLAPGHVSTIIGAKPYAPIAEKYKIPIVIA 224 (369)
T ss_pred cHHHHHHHHcCCC---CCccEEEecCEEEEEeccchhHHHHHHcCCCeEEe
Confidence 4457777776532 34588888899999999999999999999999875
No 318
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=38.04 E-value=54 Score=26.43 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=26.1
Q ss_pred cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 267 RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
++|+||+|++. .+.+-...-....--++++..+||+|+
T Consensus 102 ~~dliv~G~~~---~~~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 102 NADLIVMGSRG---RSGLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp TCSEEEEESSS---TTSTTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred cceeEEEeccC---CCCccCCCcCCHHHHHHHcCCCCEEEe
Confidence 69999999987 233333334444455677888999986
No 319
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=37.97 E-value=3.9e+02 Score=27.01 Aligned_cols=108 Identities=16% Similarity=0.189 Sum_probs=53.8
Q ss_pred Hhcc--cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH--HHHHHHHhCCCce----EEEc-ch------
Q 045642 195 ELIH--QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH--ILAKELDKKGLKA----IVIT-DS------ 259 (406)
Q Consensus 195 ~~I~--~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~--~~a~~L~~~GI~v----t~I~-Ds------ 259 (406)
+++. ..++++|-|.+..+..++....+.+.+-.++++. ...+... .+...+...|+++ ..+. +.
T Consensus 80 ~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~-~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 158 (406)
T TIGR01814 80 RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLE-AKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRL 158 (406)
T ss_pred cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEec-CCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCH
Confidence 4554 4468888877766666666544333222234432 2333332 2233455678876 3332 21
Q ss_pred -HHHHHhhcC---CEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 260 -AVFAMISRV---NMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 260 -av~~~m~~v---d~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
.+-..+... ++++ -...+....|.+.. -..++-+||.++++|+|
T Consensus 159 ~~l~~~~~~~~~~t~lv-~~~~v~~~tG~~~~--~~~i~~~~~~~g~~~~v 206 (406)
T TIGR01814 159 EDILDTIEKNGDDIAVI-LLSGVQYYTGQLFD--MAAITRAAHAKGALVGF 206 (406)
T ss_pred HHHHHHHHhcCCCeEEE-EEeccccccceecC--HHHHHHHHHHcCCEEEE
Confidence 333334321 2222 23333333344443 34477888999988877
No 320
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=37.86 E-value=1.8e+02 Score=25.45 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=29.1
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
.|..|..+|+|..+-+-|.... ..+..+|++++++-. .+...++++|.|+..+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t~-----------------------~l~~~v~~ADIVvsAt 79 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKTI-----------------------QLQSKVHDADVVVVGS 79 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCCc-----------------------CHHHHHhhCCEEEEec
Confidence 4556666666666555554444 223445555543321 2345677888888754
No 321
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=37.73 E-value=2.7e+02 Score=28.73 Aligned_cols=112 Identities=15% Similarity=0.236 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHhc--ccCcEEEeccChHHHHHHHHHH---HHc-CCceEEEEecCCCCcch-HHHHHHHHhCCCceE
Q 045642 182 INTCREGIAEQAMELI--HQNEVILTLGHSKFVKEFLCAA---KEK-KRSFEVFIADGAPKFEG-HILAKELDKKGLKAI 254 (406)
Q Consensus 182 ~~~~~~~I~~~a~~~I--~~g~~ILT~g~S~tV~~~L~~A---~~~-~~~f~ViV~EsrP~~eG-~~~a~~L~~~GI~vt 254 (406)
++.+++.|++ +| .+.++|.|-|.+....-.|+-+ .++ ++.-++|+.... ... ...++.|...|.+||
T Consensus 46 ve~AR~~iA~----llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iE--H~aVl~~~~~Le~~g~~Vt 119 (386)
T COG1104 46 VEEAREQIAK----LLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIE--HPAVLNTCRYLERQGFEVT 119 (386)
T ss_pred HHHHHHHHHH----HhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccc--cHHHHHHHHHHHhcCCeEE
Confidence 3444555543 33 3568999998887777666642 221 234456655332 333 467888877899999
Q ss_pred EEcchH--------HHHHhhcCCEEEEcceeEeeCCCcccccchHH----HHHHHhhCCCceEE
Q 045642 255 VITDSA--------VFAMISRVNMVIVGVHAVMANGGVIAPAGLHV----LALAAKKHDVPFVV 306 (406)
Q Consensus 255 ~I~Dsa--------v~~~m~~vd~VllGAdav~~nG~vvnk~GT~~----lAl~Ak~~~vPv~V 306 (406)
|++-.. +...++ =|.+++.. ..+=|-+||.+ ++-+||.++++|.|
T Consensus 120 yl~V~~~G~v~~e~L~~al~-~~T~LVSi------m~aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 120 YLPVDSNGLVDLEQLEEALR-PDTILVSI------MHANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred EeCCCCCCeEcHHHHHHhcC-CCceEEEE------EecccCeeecccHHHHHHHHHHcCCeEEE
Confidence 986442 222222 23333332 13346778754 78899999999887
No 322
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=37.69 E-value=2.8e+02 Score=28.08 Aligned_cols=94 Identities=20% Similarity=0.271 Sum_probs=49.8
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc----------hHHHHHh-hc
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD----------SAVFAMI-SR 267 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D----------sav~~~m-~~ 267 (406)
..++++|.|.+..+..++......|. +|++. .|.+.+... .....|+.+..++. ..+-... ++
T Consensus 96 ~~~ii~t~G~t~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 169 (403)
T TIGR01265 96 ADDVVLTSGCSQAIEICIEALANPGA--NILVP--RPGFPLYDT--RAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEK 169 (403)
T ss_pred HHHEEEecChHHHHHHHHHHhCCCCC--EEEEe--CCCchhHHH--HHHHcCCEEEEecCCcccCCccCHHHHHHHhCcC
Confidence 44577777766665555555543343 44444 466655332 23456777766531 1222222 23
Q ss_pred CCEEEEcceeEeeCCCcccccchH-------HHHHHHhhCCCceEE
Q 045642 268 VNMVIVGVHAVMANGGVIAPAGLH-------VLALAAKKHDVPFVV 306 (406)
Q Consensus 268 vd~VllGAdav~~nG~vvnk~GT~-------~lAl~Ak~~~vPv~V 306 (406)
..+|++- +- -|..|+. .++-.|+++++++++
T Consensus 170 ~~~v~i~------~p--~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 170 TVAIVVI------NP--SNPCGSVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred ccEEEEe------cC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3344332 21 3667754 366678889988876
No 323
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=37.64 E-value=1.5e+02 Score=27.12 Aligned_cols=90 Identities=18% Similarity=0.171 Sum_probs=57.1
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEe---cCCCCcch-HHHHHHHHhCCCceEEEcchHHHHHhhc-C-CEEEEcceeEe-
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFEG-HILAKELDKKGLKAIVITDSAVFAMISR-V-NMVIVGVHAVM- 279 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~eG-~~~a~~L~~~GI~vt~I~Dsav~~~m~~-v-d~VllGAdav~- 279 (406)
|.|..=.++|+.+ |-.|+++.. |+.+..+. ..++..|+..+ +-.+.++ - +.+++|||.|.
T Consensus 5 S~SprR~elL~~~---g~~f~~~~~~iDE~~~~~~~p~~~v~~lA~~K----------a~~v~~~~~~~~liI~aDtvv~ 71 (180)
T cd00555 5 SASPRRRELLEQL---GIPFEVVPSDIDETPIKGESPEDYVLRLAEAK----------AEAVAARLPPDALVIGADTVVV 71 (180)
T ss_pred CCCHHHHHHHHhC---CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhCCCCCEEEEecEEEE
Confidence 4455555555554 568888754 44444433 57777777654 1222222 2 67999999965
Q ss_pred eCCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 280 ANGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 280 ~nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
-||.++.|-.+..-| ++-...|.+.-|++.
T Consensus 72 ~~g~il~KP~~~~eA~~~L~~lsg~~h~v~T~ 103 (180)
T cd00555 72 LDGRILGKPKDREEAREMLKRLSGRTHEVYTG 103 (180)
T ss_pred ECCEEEcCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 788899999998777 455556766665543
No 324
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=37.50 E-value=3e+02 Score=24.52 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=56.1
Q ss_pred EEeccChH-HHHHHHHHHHHcCCceEEEEecCC--CCcchHHHHHHHHhCCCceEEEc-c----hHHHHHhh-------c
Q 045642 203 ILTLGHSK-FVKEFLCAAKEKKRSFEVFIADGA--PKFEGHILAKELDKKGLKAIVIT-D----SAVFAMIS-------R 267 (406)
Q Consensus 203 ILT~g~S~-tV~~~L~~A~~~~~~f~ViV~Esr--P~~eG~~~a~~L~~~GI~vt~I~-D----sav~~~m~-------~ 267 (406)
+|..|... .-..+.+...+++ .-+|+++-.+ |..+...+.++|.+.|..+.++. | .++..++. .
T Consensus 3 ylitGG~gglg~~la~~La~~~-~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERG-ARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEECCccHHHHHHHHHHHHcC-CCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 34444433 4444445555454 4466666555 34556789999999999999884 3 23444443 3
Q ss_pred CCEEEEcceeEeeCCCccccc-------------chHHHHHHHhhCCCceEEecCC
Q 045642 268 VNMVIVGVHAVMANGGVIAPA-------------GLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 268 vd~VllGAdav~~nG~vvnk~-------------GT~~lAl~Ak~~~vPv~V~aes 310 (406)
++-||-+| .++.++.+.++. |+..+.-+...+...++++..|
T Consensus 82 i~gVih~a-g~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SS 136 (181)
T PF08659_consen 82 IDGVIHAA-GVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSS 136 (181)
T ss_dssp EEEEEE--------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEE
T ss_pred cceeeeee-eeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECC
Confidence 55566665 446677777633 4555555555567777777654
No 325
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=37.49 E-value=1.1e+02 Score=28.50 Aligned_cols=89 Identities=17% Similarity=0.123 Sum_probs=57.2
Q ss_pred ccChHHHHHHHHHHHHcCCceEEEEec--CCCCcc--hHHHHHHHHhCCCceEEEcchHHHHHhhc-CCEEEEcceeEe-
Q 045642 206 LGHSKFVKEFLCAAKEKKRSFEVFIAD--GAPKFE--GHILAKELDKKGLKAIVITDSAVFAMISR-VNMVIVGVHAVM- 279 (406)
Q Consensus 206 ~g~S~tV~~~L~~A~~~~~~f~ViV~E--srP~~e--G~~~a~~L~~~GI~vt~I~Dsav~~~m~~-vd~VllGAdav~- 279 (406)
-|.|..=.++|..+. -.|+|+..+ ..+... -...+..|+..+ |-...-.. .|.+|+|||.|+
T Consensus 8 AS~SPrR~elL~~~g---i~f~~~~~~iDE~~~~~~~P~~~v~~LA~~K---------A~~va~~~~~~~~VigaDtvv~ 75 (193)
T COG0424 8 ASSSPRRRELLEQLG---IPFEVIPSDIDEPLLKAEEPREYVLRLAEEK---------ARAVAARLPPDALVIGADTVVV 75 (193)
T ss_pred ecCCHHHHHHHHHCC---CCeEEecCCCCCCcccCCCHHHHHHHHHHHH---------HHHHHHhCCCCCEEEecCeEEE
Confidence 356666666777664 689999863 334322 478888888654 11111122 489999999875
Q ss_pred eCCCcccccchHHHH--HHHhhCCCceEE
Q 045642 280 ANGGVIAPAGLHVLA--LAAKKHDVPFVV 306 (406)
Q Consensus 280 ~nG~vvnk~GT~~lA--l~Ak~~~vPv~V 306 (406)
-||-++.|-.+..-| ++.+-.|.-.=|
T Consensus 76 ldgrilgKP~~~~eA~~~L~~lSG~~h~v 104 (193)
T COG0424 76 LDGRILGKPKDEEEAREMLRKLSGRTHQV 104 (193)
T ss_pred ECCEEecCCCCHHHHHHHHHHhcCCeEEE
Confidence 477788999998766 344445544333
No 326
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=37.43 E-value=1.2e+02 Score=22.67 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=32.1
Q ss_pred HHHHHHHcCC-ceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHh
Q 045642 215 FLCAAKEKKR-SFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMI 265 (406)
Q Consensus 215 ~L~~A~~~~~-~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m 265 (406)
.+.+|.+.+. -.+||+.+..-...-..+.+.+.+.|+++..+++.-+..+.
T Consensus 7 ~V~eaL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls 58 (76)
T PF08032_consen 7 AVEEALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIPVYEVSKKVLDKLS 58 (76)
T ss_dssp HHHHHHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-EEEEE-HHHHHHCT
T ss_pred HHHHHHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCeEEEeCHHHHHHHc
Confidence 4445554544 45688888833333467888888999999999987765544
No 327
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=37.42 E-value=33 Score=27.84 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=46.0
Q ss_pred HHHHHHHhCCCceE----E-Ecc-hHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceE
Q 045642 241 ILAKELDKKGLKAI----V-ITD-SAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFV 305 (406)
Q Consensus 241 ~~a~~L~~~GI~vt----~-I~D-sav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 305 (406)
..|+.|.+.|..|. . +++ ..=..+|+.+=..|..||+|+-=++--+.-|+..=..+|+..|+||+
T Consensus 20 ~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 20 AAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYMLPGWENSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred HHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHHCCCeEe
Confidence 45677777774332 1 122 12245666666666677777777788899999999999999999997
No 328
>PRK06701 short chain dehydrogenase; Provisional
Probab=37.30 E-value=3.5e+02 Score=25.97 Aligned_cols=99 Identities=13% Similarity=0.149 Sum_probs=54.2
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc----hHHHHHh-------hc
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD----SAVFAMI-------SR 267 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D----sav~~~m-------~~ 267 (406)
|.+||..|.++.+=..+.....+ +..+|+++..++...-...+..+...|.++.++ .| ..+..++ .+
T Consensus 46 ~k~iLItGasggIG~~la~~l~~-~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~ 124 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAK-EGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR 124 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56788888777666655444321 345677765444333345556666666555443 33 2232233 24
Q ss_pred CCEEEEcceeEeeCCCc-------------ccccchHHHHHHHhh
Q 045642 268 VNMVIVGVHAVMANGGV-------------IAPAGLHVLALAAKK 299 (406)
Q Consensus 268 vd~VllGAdav~~nG~v-------------vnk~GT~~lAl~Ak~ 299 (406)
+|.||--|-.....+.+ +|-.|++.++-++..
T Consensus 125 iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~ 169 (290)
T PRK06701 125 LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALP 169 (290)
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 68777655432222222 566788888877654
No 329
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=37.22 E-value=1.4e+02 Score=30.40 Aligned_cols=97 Identities=12% Similarity=0.125 Sum_probs=66.9
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEecCCCCcch----HHHHHHHHh-C-CCceEEEcchH--HHHHhhcCCEEEEcceeE
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG----HILAKELDK-K-GLKAIVITDSA--VFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG----~~~a~~L~~-~-GI~vt~I~Dsa--v~~~m~~vd~VllGAdav 278 (406)
-...++..+++.|.+.+...-+-+.++.=.+-| ..+++.+++ . .|||.+-.|-+ .-.++.-++ .|-.+|
T Consensus 24 ~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~---~GFtSV 100 (347)
T TIGR01521 24 NNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQ---LGFTSV 100 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHH---cCCCEE
Confidence 456788888888887666543333333222333 245555654 4 38999999976 344444333 499999
Q ss_pred eeCCCcc-----------cccchHHHHHHHhhCCCceEE
Q 045642 279 MANGGVI-----------APAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 279 ~~nG~vv-----------nk~GT~~lAl~Ak~~~vPv~V 306 (406)
+-||+-. |-.=|..++-.|+.+|++|=.
T Consensus 101 MiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEa 139 (347)
T TIGR01521 101 MMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEG 139 (347)
T ss_pred eecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 9999988 888899999999999998653
No 330
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=37.11 E-value=5e+02 Score=27.26 Aligned_cols=117 Identities=14% Similarity=0.221 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCC-CCcchHHHHHHHHh-CCCceEEE
Q 045642 179 IEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGA-PKFEGHILAKELDK-KGLKAIVI 256 (406)
Q Consensus 179 ~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~Esr-P~~eG~~~a~~L~~-~GI~vt~I 256 (406)
+++.....+.+.+.+..++ .|..+..+|.+..+..+-+-..+.|-...+.++-+. +..+.....++|.+ .+..+.++
T Consensus 285 ~~er~~~~~~~~~~~~~~l-~Gkrv~i~g~~~~~~~l~~fl~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi 363 (454)
T cd01973 285 VRERGIAIDALADLAHMFF-ANKKVAIFGHPDLVIGLAEFCLEVEMKPVLLLLGDDNSKYKKDPRIKALKEKADYDMEIV 363 (454)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCeEEEEcCHHHHHHHHHHHHHCCCeEEEEEECCCCcccchhHHHHHHHhhcCCCceEE
Confidence 3344444555555444444 577777788887666655555556777666666554 44445555555532 34333344
Q ss_pred cchHHH---HHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 257 TDSAVF---AMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 257 ~Dsav~---~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
.+.-.. ..+.+. =.++|-++.| ..---+|+..++|++.+.
T Consensus 364 ~~~d~~e~~~~i~~~---~~~~dliig~---------s~~~~~A~~~gip~~~~g 406 (454)
T cd01973 364 TNADLWELEKRIKNK---GLELDLILGH---------SKGRYIAIDNNIPMVRVG 406 (454)
T ss_pred ECCCHHHHHHHHHhc---CCCCCEEEEC---------CccHHHHHHcCCCEEEec
Confidence 443332 233221 0123444432 122457888999998763
No 331
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=37.01 E-value=4e+02 Score=25.79 Aligned_cols=104 Identities=22% Similarity=0.232 Sum_probs=60.7
Q ss_pred EEEeccC---hHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEE-EcchH----HHHHhhcC-CEEE
Q 045642 202 VILTLGH---SKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIV-ITDSA----VFAMISRV-NMVI 272 (406)
Q Consensus 202 ~ILT~g~---S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~-I~Dsa----v~~~m~~v-d~Vl 272 (406)
++|||-+ ...+++|+..+++.|-. -|+|.+ =|..|...+.+.+.+.|++... ++-+. +..+.+.. +++-
T Consensus 93 vlm~Y~N~i~~~G~e~f~~~~~~aGvd-GviipD-Lp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY 170 (258)
T PRK13111 93 VLMTYYNPIFQYGVERFAADAAEAGVD-GLIIPD-LPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVY 170 (258)
T ss_pred EEEecccHHhhcCHHHHHHHHHHcCCc-EEEECC-CCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 6777663 55788999999977633 355554 4556778999999999998766 44443 23333322 3332
Q ss_pred E-cceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 273 V-GVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 273 l-GAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
+ +--.+.....-........+..+.+..++|++|-
T Consensus 171 ~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vG 206 (258)
T PRK13111 171 YVSRAGVTGARSADAADLAELVARLKAHTDLPVAVG 206 (258)
T ss_pred EEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEE
Confidence 2 2211111111122233445667777779999874
No 332
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=36.98 E-value=1.2e+02 Score=27.17 Aligned_cols=8 Identities=38% Similarity=0.679 Sum_probs=3.9
Q ss_pred ceEEEcch
Q 045642 252 KAIVITDS 259 (406)
Q Consensus 252 ~vt~I~Ds 259 (406)
+..++.|+
T Consensus 80 d~i~~lD~ 87 (224)
T cd06442 80 DVIVVMDA 87 (224)
T ss_pred CEEEEEEC
Confidence 55555443
No 333
>PRK09134 short chain dehydrogenase; Provisional
Probab=36.91 E-value=1.2e+02 Score=28.23 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=53.1
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc----hHHHHHhh-------
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD----SAVFAMIS------- 266 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D----sav~~~m~------- 266 (406)
.+.++|..|.|+.+=.-|.+... .+..+|+++..+.......+...+...|-.+..+ .| .++..++.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 86 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLA-AHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG 86 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35578888888776665554432 2335777765554333456667776666555543 33 23333333
Q ss_pred cCCEEEEcceeEeeCCC-------------cccccchHHHHHHHhh
Q 045642 267 RVNMVIVGVHAVMANGG-------------VIAPAGLHVLALAAKK 299 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~-------------vvnk~GT~~lAl~Ak~ 299 (406)
++|.||--|-. ...+. -+|-.|++.++-++..
T Consensus 87 ~iD~vi~~ag~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~ 131 (258)
T PRK09134 87 PITLLVNNASL-FEYDSAASFTRASWDRHMATNLRAPFVLAQAFAR 131 (258)
T ss_pred CCCEEEECCcC-CCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35666665521 11111 1466677777765544
No 334
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=36.81 E-value=85 Score=25.48 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=35.9
Q ss_pred HHHHhCCCceEEEcchH--HHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 244 KELDKKGLKAIVITDSA--VFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 244 ~~L~~~GI~vt~I~Dsa--v~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
+.+.+.|+++.+..-+. +.....++|.|++|.+.-+.- -.+--.+..+++||.++-
T Consensus 25 ~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~---------~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 25 KAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYML---------PDLKKETDKKGIPVEVIN 82 (95)
T ss_pred HHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHH---------HHHHHHhhhcCCCEEEeC
Confidence 44556788777665544 444667899999997654321 123344667789999863
No 335
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.81 E-value=2.7e+02 Score=28.57 Aligned_cols=71 Identities=23% Similarity=0.264 Sum_probs=40.5
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhc-CCEEEEcc
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISR-VNMVIVGV 275 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~-vd~VllGA 275 (406)
|.+|+..|..+.=...-+..++.| .+|++.+..+... ...+..|.+.|+.+..-.+.. ....+ +|.||.++
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~~~~-~~~~~~l~~~g~~~~~~~~~~--~~~~~~~d~vV~s~ 76 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKPFSE-NPEAQELLEEGIKVICGSHPL--ELLDEDFDLMVKNP 76 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCCccc-hhHHHHHHhcCCEEEeCCCCH--HHhcCcCCEEEECC
Confidence 566777776654333434444344 5788888665322 234567888898776433332 12333 67776655
No 336
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=36.80 E-value=75 Score=33.40 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=26.2
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCC
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPK 236 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~ 236 (406)
..||..+++....++++.+.+.|. +++++.+.|.
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~Gi--~~v~v~~~~d 36 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEMGI--RSVAIYSEAD 36 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCC--eEEEEeCCCc
Confidence 478999999999999999997764 5555555544
No 337
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=36.71 E-value=5e+02 Score=26.84 Aligned_cols=113 Identities=23% Similarity=0.292 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHhcc---cCcEEEeccChHHHHHHHHHHHH-cCCceEEEEecCCCCcchHHHHHHHHh-CCCceEE
Q 045642 181 DINTCREGIAEQAMELIH---QNEVILTLGHSKFVKEFLCAAKE-KKRSFEVFIADGAPKFEGHILAKELDK-KGLKAIV 255 (406)
Q Consensus 181 e~~~~~~~I~~~a~~~I~---~g~~ILT~g~S~tV~~~L~~A~~-~~~~f~ViV~EsrP~~eG~~~a~~L~~-~GI~vt~ 255 (406)
.++.+++.++ ++|. ..++|+|-+-+..+..+...... .++.-+|++.+-.-.-. ..--.+|++ .|..+++
T Consensus 67 ~~e~aRe~va----~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn-~~pw~~~~~~~Ga~v~~ 141 (405)
T COG0520 67 LYEAAREAVA----RFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSN-IVPWQELAKRTGAKVRV 141 (405)
T ss_pred HHHHHHHHHH----HHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhh-HHHHHHHHHhcCcEEEE
Confidence 3445555554 3554 24588887777666666555521 12335677776542211 233445555 4999999
Q ss_pred Ec--ch------HHHHHhhc-CCEEEEcceeEeeCCCcccccch----HHHHHHHhhCCCceEE
Q 045642 256 IT--DS------AVFAMISR-VNMVIVGVHAVMANGGVIAPAGL----HVLALAAKKHDVPFVV 306 (406)
Q Consensus 256 I~--Ds------av~~~m~~-vd~VllGAdav~~nG~vvnk~GT----~~lAl~Ak~~~vPv~V 306 (406)
++ +. .....+.. ...|.+. .+.|..|+ -.|+-+||.+|..|+|
T Consensus 142 i~~~~~g~~~~~~~~~~i~~~Tklvais--------~vSn~tG~~~pv~~I~~la~~~ga~v~V 197 (405)
T COG0520 142 IPLDDDGLLDLDALEKLITPKTKLVALS--------HVSNVTGTVNPVKEIAELAHEHGALVLV 197 (405)
T ss_pred EecCCCCCcCHHHHHHhcCCCceEEEEE--------CccccccccchHHHHHHHHHHcCCEEEE
Confidence 98 22 12222333 3333333 33444444 4588999999988877
No 338
>PRK10537 voltage-gated potassium channel; Provisional
Probab=36.53 E-value=4.6e+02 Score=27.06 Aligned_cols=92 Identities=16% Similarity=0.137 Sum_probs=54.8
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHh-----hcCCEEEEc
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMI-----SRVNMVIVG 274 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m-----~~vd~VllG 274 (406)
.+.|+..|++..-..+.+...+++.++ .|+|... .+...+.|.++..- |..=...+ .+++.|++-
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~v--vVId~d~-------~~~~~~~g~~vI~G-D~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAV--TVIVPLG-------LEHRLPDDADLIPG-DSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCE--EEEECch-------hhhhccCCCcEEEe-CCCCHHHHHhcCcccCCEEEEc
Confidence 466888899988888888776556544 4444321 13344467775444 44333333 356666664
Q ss_pred ceeEeeCCCcccccchHHHHHHHhhCC--CceEEecCC
Q 045642 275 VHAVMANGGVIAPAGLHVLALAAKKHD--VPFVVVAST 310 (406)
Q Consensus 275 Adav~~nG~vvnk~GT~~lAl~Ak~~~--vPv~V~aes 310 (406)
.+ +..-...++++||+.+ +++++.+..
T Consensus 310 t~---------dD~~Nl~ivL~ar~l~p~~kIIa~v~~ 338 (393)
T PRK10537 310 RD---------NDADNAFVVLAAKEMSSDVKTVAAVND 338 (393)
T ss_pred CC---------ChHHHHHHHHHHHHhCCCCcEEEEECC
Confidence 43 2344567889999987 446655544
No 339
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=36.49 E-value=2.3e+02 Score=28.73 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=45.4
Q ss_pred CCceEEEEecCCCCcchHHHHHHHHhCCCceE--------------EEcc--hHHHHHhhcCCEEEEcceeEeeCCCccc
Q 045642 223 KRSFEVFIADGAPKFEGHILAKELDKKGLKAI--------------VITD--SAVFAMISRVNMVIVGVHAVMANGGVIA 286 (406)
Q Consensus 223 ~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt--------------~I~D--sav~~~m~~vd~VllGAdav~~nG~vvn 286 (406)
..+++++++-..|.. ...+.+.+.+.|+... ++.| ..+..++..+|.+++|..- .+.|+.
T Consensus 260 ~~~~~liivG~g~~r-~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~-~e~~g~-- 335 (425)
T PRK05749 260 FPNLLLILVPRHPER-FKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSL-VKRGGH-- 335 (425)
T ss_pred CCCcEEEEcCCChhh-HHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCc-CCCCCC--
Confidence 456777777544432 1345566677787532 2223 4678888999998886432 122221
Q ss_pred ccchHHHHHHHhhCCCceEEe
Q 045642 287 PAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 287 k~GT~~lAl~Ak~~~vPv~V~ 307 (406)
..+=|-.+|+||++-
T Consensus 336 ------~~lEAma~G~PVI~g 350 (425)
T PRK05749 336 ------NPLEPAAFGVPVISG 350 (425)
T ss_pred ------CHHHHHHhCCCEEEC
Confidence 136677889999973
No 340
>PRK01441 Maf-like protein; Reviewed
Probab=36.44 E-value=2.4e+02 Score=26.42 Aligned_cols=95 Identities=17% Similarity=0.125 Sum_probs=54.4
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEe----cCCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHhh----cCCEEE
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIA----DGAPKFE-GHILAKELDKKGLKAIVITDSAVFAMIS----RVNMVI 272 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~----EsrP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m~----~vd~Vl 272 (406)
.|| -|.|..=.++|+.+ |-.|..++. |+.+..+ -..++..|++.+-. ++..-+. .-+.+|
T Consensus 7 iIL-AS~SprR~elL~~~---Gi~f~~v~~~~iDE~~~~~~~p~~~v~~lA~~Ka~-------~v~~~~~~~~~~~~~~v 75 (207)
T PRK01441 7 LVL-ASGSPRRVELLNQA---GIEPDRLMPADIDETPKRAEHPRSLARRLSREKAE-------AALEALQGDDDWRGAYI 75 (207)
T ss_pred EEE-eCCCHHHHHHHHhc---CCCCeEEeCCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhccccccCCCcEE
Confidence 444 35566655666554 566664433 3333222 35777777765411 0111111 135699
Q ss_pred EcceeE-eeCCCcccccchHHHH--HHHhhCCCceEEe
Q 045642 273 VGVHAV-MANGGVIAPAGLHVLA--LAAKKHDVPFVVV 307 (406)
Q Consensus 273 lGAdav-~~nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ 307 (406)
+|||.| .-||.++.|-.+..-| ++....|.+.-|.
T Consensus 76 I~aDTvV~~~g~il~KP~~~~eA~~~L~~lsG~~h~V~ 113 (207)
T PRK01441 76 LAADTVVAVGRRILPKAELVDEASQCLRLLSGRNHRVY 113 (207)
T ss_pred EecCEEEEECCEEcCCCCCHHHHHHHHHHHCCCceEEE
Confidence 999984 6678888999988766 4566666654443
No 341
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=36.42 E-value=1.1e+02 Score=29.58 Aligned_cols=77 Identities=12% Similarity=0.186 Sum_probs=49.6
Q ss_pred EEEEecCCCC-cchHHHHHHHHhCCCceEEEcchHHHH----HhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCC
Q 045642 227 EVFIADGAPK-FEGHILAKELDKKGLKAIVITDSAVFA----MISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHD 301 (406)
Q Consensus 227 ~ViV~EsrP~-~eG~~~a~~L~~~GI~vt~I~Dsav~~----~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~ 301 (406)
+|++.-.+.. .-+..++..|...|+++.++.|..... .+..=|.||+-.. .|.-- -+..++-.||.+|
T Consensus 142 ~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~----sG~t~---~~~~~~~~ak~~g 214 (292)
T PRK11337 142 QRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVSH----SGRTS---DVIEAVELAKKNG 214 (292)
T ss_pred eEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEeC----CCCCH---HHHHHHHHHHHCC
Confidence 3555533321 223566778888999999998876543 3445566665321 22222 2667888999999
Q ss_pred CceEEecCC
Q 045642 302 VPFVVVAST 310 (406)
Q Consensus 302 vPv~V~aes 310 (406)
+|+++++..
T Consensus 215 ~~ii~IT~~ 223 (292)
T PRK11337 215 AKIICITNS 223 (292)
T ss_pred CeEEEEeCC
Confidence 999999865
No 342
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=36.37 E-value=1.5e+02 Score=29.32 Aligned_cols=90 Identities=14% Similarity=0.191 Sum_probs=62.2
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEee
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMA 280 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~ 280 (406)
+.-+.|=....+.....+|.+.+-+.-|+++|.=|...=..+.+++.+.| +.+|=-+.-+.+.+...++=+=...++.
T Consensus 67 ~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g--~~iiGPncpGiI~Pg~~kiGimp~~i~~ 144 (293)
T COG0074 67 NASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG--TRLIGPNCPGIITPGECKIGIMPGNIYK 144 (293)
T ss_pred CEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC--CEEECCCCCccCcCCcceeeechhhhcc
Confidence 33444555566788888888888999999999999988888888898888 6666555556666664333221245555
Q ss_pred CC--CcccccchHH
Q 045642 281 NG--GVIAPAGLHV 292 (406)
Q Consensus 281 nG--~vvnk~GT~~ 292 (406)
-| ++++++||+.
T Consensus 145 ~G~IGiVSrSGTLT 158 (293)
T COG0074 145 PGNIGIVSRSGTLT 158 (293)
T ss_pred CCceEEEecCcchH
Confidence 56 4577887654
No 343
>PRK14365 Maf-like protein; Provisional
Probab=36.36 E-value=1.8e+02 Score=26.98 Aligned_cols=91 Identities=16% Similarity=0.104 Sum_probs=54.1
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEe---cCCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHhh-cCCEEEEcceeE-ee
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFE-GHILAKELDKKGLKAIVITDSAVFAMIS-RVNMVIVGVHAV-MA 280 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m~-~vd~VllGAdav-~~ 280 (406)
|.|..=..+|..+. |-.|+|+.. |+....+ -..++..|+..+. -.+.+ .-+.+|+|||.| .-
T Consensus 8 SsSprR~elL~~~~--g~~f~vi~~~idE~~~~~~~p~~~v~~lA~~KA----------~~v~~~~~~~~vI~aDTvV~~ 75 (197)
T PRK14365 8 SASPRRKELLKQLI--GDNFLVYPSSYEEPPQPGLDPEELLLKHSLEKA----------RDVAKHFDSGIIISADTSVFC 75 (197)
T ss_pred CCCHHHHHHHhcCc--CcCeEEECCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHhCCCCEEEEeCeEEEE
Confidence 44444444554432 578887754 2222222 2466666665431 11111 146799999995 57
Q ss_pred CCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 281 NGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 281 nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
||.++.|-.+..=| ++-...|.+.-|.+.
T Consensus 76 ~g~Il~KP~~~~eA~~~L~~lsg~~h~v~T~ 106 (197)
T PRK14365 76 NGEVLGKPASPENAEEMLEKLSGRKFLVITG 106 (197)
T ss_pred CCEEecCCCCHHHHHHHHHHHCCCceEEEEE
Confidence 89999999998776 466667776666543
No 344
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.21 E-value=1.6e+02 Score=30.38 Aligned_cols=75 Identities=7% Similarity=0.052 Sum_probs=41.0
Q ss_pred ccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHh--CCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 198 HQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDK--KGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 198 ~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~--~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
....+|+.+|...+=..+.+.+.+. .++|.+.|..+.. .+..+|.+ .||++.+-.... ..+.++|.||++.
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~~~---~~~~~l~~~~~g~~~~~~~~~~--~~~~~~d~vV~sp 76 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLARQ--GIPFAVMDSREQP---PGLDTLAREFPDVELRCGGFDC--ELLVQASEIIISP 76 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHHhC--CCeEEEEeCCCCc---hhHHHHHhhcCCcEEEeCCCCh--HHhcCCCEEEECC
Confidence 3444666655433323333333333 4789999987643 23345776 487776542221 2346789888876
Q ss_pred eeEee
Q 045642 276 HAVMA 280 (406)
Q Consensus 276 dav~~ 280 (406)
+|-.
T Consensus 77 -~i~~ 80 (448)
T PRK03803 77 -GLAL 80 (448)
T ss_pred -CCCC
Confidence 4433
No 345
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=36.21 E-value=1.4e+02 Score=28.23 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=20.1
Q ss_pred ccccchHHHHHHHhhCCCceEEecCC
Q 045642 285 IAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 285 vnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
+|..|+..++-+|+..+++|+.++..
T Consensus 76 ~n~~~~~~l~~~~~~~~~~~v~~Ss~ 101 (287)
T TIGR01214 76 VNALAPQNLARAAARHGARLVHISTD 101 (287)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeee
Confidence 35578999998999888888776654
No 346
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=36.21 E-value=3.2e+02 Score=25.70 Aligned_cols=96 Identities=18% Similarity=0.237 Sum_probs=55.4
Q ss_pred cEEEeccCh------HHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCc--eE---EEcchHHHHHhhcCC
Q 045642 201 EVILTLGHS------KFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLK--AI---VITDSAVFAMISRVN 269 (406)
Q Consensus 201 ~~ILT~g~S------~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~--vt---~I~Dsav~~~m~~vd 269 (406)
-+|+..|+- ..+.+++....+++..++++++-..+......+.....+.|.+ +. .+++..+..++..+|
T Consensus 204 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad 283 (375)
T cd03821 204 RIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADAD 283 (375)
T ss_pred cEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCC
Confidence 356666642 2344444444444567888877665543333333222455543 33 245567888899999
Q ss_pred EEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 270 MVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 270 ~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
.+++.... . | .| ...+=|-.+|+||++
T Consensus 284 v~v~ps~~--e-~-----~~--~~~~Eama~G~PvI~ 310 (375)
T cd03821 284 LFVLPSHS--E-N-----FG--IVVAEALACGTPVVT 310 (375)
T ss_pred EEEecccc--C-C-----CC--cHHHHHHhcCCCEEE
Confidence 98876543 1 1 12 234557778999987
No 347
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.21 E-value=1.4e+02 Score=28.95 Aligned_cols=96 Identities=15% Similarity=0.200 Sum_probs=53.4
Q ss_pred cCcEEEeccChHHHHHHHHHH-HHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cch----HHHHHhh------
Q 045642 199 QNEVILTLGHSKFVKEFLCAA-KEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TDS----AVFAMIS------ 266 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A-~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~Ds----av~~~m~------ 266 (406)
+|.++++.|.++.+=..+... .++| .+|++...++......++.++...|-.+.++ .|- ++..++.
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~G--a~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g 88 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLG--ATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLG 88 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 466788888877666655443 3344 4777776544333456777887777665544 232 2333333
Q ss_pred cCCEEEEcceeEeeCCCc-------------ccccchHHHHHHH
Q 045642 267 RVNMVIVGVHAVMANGGV-------------IAPAGLHVLALAA 297 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~v-------------vnk~GT~~lAl~A 297 (406)
++|.||-.|- +...+.+ +|-.|++.+..++
T Consensus 89 ~iD~li~nAG-~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~ 131 (306)
T PRK07792 89 GLDIVVNNAG-ITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNA 131 (306)
T ss_pred CCCEEEECCC-CCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHH
Confidence 4676665542 2222211 3455777776654
No 348
>PRK12939 short chain dehydrogenase; Provisional
Probab=36.19 E-value=1.2e+02 Score=27.83 Aligned_cols=53 Identities=25% Similarity=0.233 Sum_probs=30.3
Q ss_pred CcEEEeccChHHHHHHHHHH-HHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEE
Q 045642 200 NEVILTLGHSKFVKEFLCAA-KEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIV 255 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A-~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~ 255 (406)
+.+|+..|.++.+=..|... .++| .+|+++..+ ......+++.+...|-++.+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G--~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~ 60 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAG--ATVAFNDGL-AAEARELAAALEAAGGRAHA 60 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcC--CEEEEEeCC-HHHHHHHHHHHHhcCCcEEE
Confidence 56777777766665555443 3334 467777433 33334566777666655543
No 349
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=36.13 E-value=2.8e+02 Score=26.20 Aligned_cols=47 Identities=26% Similarity=0.224 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHH---cCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc
Q 045642 209 SKFVKEFLCAAKE---KKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD 258 (406)
Q Consensus 209 S~tV~~~L~~A~~---~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D 258 (406)
+...+..+.+|.+ ...++-|=|.-+. +|...++.|++.||+|....-
T Consensus 62 ~~d~e~mi~eA~~l~~~~~nv~IKIP~T~---~Gl~Ai~~L~~~GI~vn~T~v 111 (220)
T PRK12655 62 SRDAQGMVEEAKRLRNAIPGIVVKIPVTA---EGLAAIKKLKKEGIPTLGTAV 111 (220)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCCCH---HHHHHHHHHHHCCCceeEeEe
Confidence 3456777777664 2334333344333 899999999999998775543
No 350
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=36.10 E-value=1.3e+02 Score=31.13 Aligned_cols=88 Identities=14% Similarity=0.255 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCceEEEEecCCCCcch--HHHHHHHHhCCCceEEEcchH---HHHHhhcCCEEEEcceeEeeCCCccc
Q 045642 212 VKEFLCAAKEKKRSFEVFIADGAPKFEG--HILAKELDKKGLKAIVITDSA---VFAMISRVNMVIVGVHAVMANGGVIA 286 (406)
Q Consensus 212 V~~~L~~A~~~~~~f~ViV~EsrP~~eG--~~~a~~L~~~GI~vt~I~Dsa---v~~~m~~vd~VllGAdav~~nG~vvn 286 (406)
+...|......|-.+ +-++-.+.| -++...|.+.||+|+.+-... ....|..=+|.|.. +.|-.-+.-+-
T Consensus 90 ~~~ai~~la~aGD~i----Vss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~-EtigNP~~~v~ 164 (426)
T COG2873 90 ITYAILNLAGAGDNI----VSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTKAVFA-ETIGNPGLDVL 164 (426)
T ss_pred HHHHHHHhccCCCee----EeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccceEEE-EeccCCCcccc
Confidence 333333433355542 233444555 467777899999999985433 34445444554443 44443333333
Q ss_pred ccchHHHHHHHhhCCCceEE
Q 045642 287 PAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 287 k~GT~~lAl~Ak~~~vPv~V 306 (406)
.+ -.+|-+||++++|++|
T Consensus 165 Di--e~ia~iAh~~gvpliV 182 (426)
T COG2873 165 DI--EAIAEIAHRHGVPLIV 182 (426)
T ss_pred CH--HHHHHHHHHcCCcEEE
Confidence 33 3588999999999998
No 351
>PLN02427 UDP-apiose/xylose synthase
Probab=36.07 E-value=1.5e+02 Score=29.88 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=58.8
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCC-----CceEEE----cc-hHHHHHhhcCCE
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKG-----LKAIVI----TD-SAVFAMISRVNM 270 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~G-----I~vt~I----~D-sav~~~m~~vd~ 270 (406)
.+||+.|.+..+=..|.....+....+|+++...+.. ...|...+ -.++++ .| ..+..+++.+|.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~-----~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDK-----IKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchh-----hhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 4688888877777766554422223678877643321 11222111 123333 22 345667778998
Q ss_pred EEEcceeEeeCC--------CcccccchHHHHHHHhhCCCceEEecC
Q 045642 271 VIVGVHAVMANG--------GVIAPAGLHVLALAAKKHDVPFVVVAS 309 (406)
Q Consensus 271 VllGAdav~~nG--------~vvnk~GT~~lAl~Ak~~~vPv~V~ae 309 (406)
||=-|-.+.... --.|-.||..+.-+|+..+++|+.++.
T Consensus 90 ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS 136 (386)
T PLN02427 90 TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFST 136 (386)
T ss_pred EEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 886553221111 114678999999899888877666553
No 352
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=36.04 E-value=2.9e+02 Score=26.56 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=58.5
Q ss_pred cCcEEEeccChHHHHHHHHHH-HHcCCceEEEEecCCCCcchHHHHHHHHh-CC--CceEEE----cc-hHHHHHhhcCC
Q 045642 199 QNEVILTLGHSKFVKEFLCAA-KEKKRSFEVFIADGAPKFEGHILAKELDK-KG--LKAIVI----TD-SAVFAMISRVN 269 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A-~~~~~~f~ViV~EsrP~~eG~~~a~~L~~-~G--I~vt~I----~D-sav~~~m~~vd 269 (406)
.|.+||+.|.++.+=..|... .++| .+|+++.-++.... .+ ..+.. .+ -.++++ .| ..+..+++++|
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g--~~V~~~~r~~~~~~-~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d 78 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRG--YTVKATVRDPNDPK-KT-EHLLALDGAKERLHLFKANLLEEGSFDSVVDGCE 78 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCC--CEEEEEEcCCCchh-hH-HHHHhccCCCCceEEEeccccCcchHHHHHcCCC
Confidence 356789999887776665443 3344 46665543332211 11 12211 11 123333 22 45667788899
Q ss_pred EEEEcceeEee---CC--Cc--ccccchHHHHHHHhhC-CCceEEecCC
Q 045642 270 MVIVGVHAVMA---NG--GV--IAPAGLHVLALAAKKH-DVPFVVVAST 310 (406)
Q Consensus 270 ~VllGAdav~~---nG--~v--vnk~GT~~lAl~Ak~~-~vPv~V~aes 310 (406)
.||--|-.+.. +. .. .|-.||..+.-+|+.. ++.=+|.+.+
T Consensus 79 ~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS 127 (322)
T PLN02662 79 GVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSS 127 (322)
T ss_pred EEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccC
Confidence 98887643321 11 11 2678999988887776 7654444433
No 353
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway []. This reaction enables ribose to be synthesized from sugars, as well as the recycling of sugars during the degradation of nucleotides. There are two unrelated types of ribose 5-phosphate isomerases: type A (RpiA) is the most common and is found in most organisms, while type B (RpiB) is restricted to specific eukaryotic and prokaryotic species. Escherichia coli produces both RpiA and RpiB (also known as AlsB), although RpiA accounts for 99% of total RPI enzymes []. This entry represents type A (RpiA) enzymes found in eukaryotes (plants, Metazoa and fungi), bacteria and archaea.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt, non-oxidative branch; PDB: 1M0S_B 3HHE_B 1LKZ_B 1KS2_A 1O8B_A 3UW1_A 3U7J_A 3L7O_A 1XTZ_A 1UJ6_A ....
Probab=35.98 E-value=62 Score=29.51 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=49.8
Q ss_pred HHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccch-HHHHHHHhhCCCceEEecCCccccccC
Q 045642 240 HILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGL-HVLALAAKKHDVPFVVVASTHELCSLY 317 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT-~~lAl~Ak~~~vPv~V~aes~K~~~~~ 317 (406)
..++..+.+.||+++-..+. .++|..|=|||.|-.|..++---|. +.-==+......-++++++.-|+.+..
T Consensus 8 ~~T~~~a~~~Gi~l~~~~~~------~~iDl~iDGaDevd~~l~lIKGgGgallrEKiva~~a~~~I~i~DesK~v~~L 80 (173)
T PF06026_consen 8 EATELLARKLGIPLVDLDEV------DRIDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKRFIIIVDESKLVEKL 80 (173)
T ss_dssp HHHHHHHHHTT-EBE-GGGS------SSEEEEEEE-SEEETTSEEE--TTS-HHHHHHHHHTEEEEEEEEEGGGBESSB
T ss_pred HHHHHHHHHcCCcEEccccC------CcceEEEECchhhcCCCCEEECCCccchhhhhHHHhhceEEEEECCCcEeeEc
Confidence 46677888899998877663 7899999999999999888844443 222223444566788899999998854
No 354
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=35.98 E-value=50 Score=34.33 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=42.6
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc-hHHHHHhhc--CCEEEEccee
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD-SAVFAMISR--VNMVIVGVHA 277 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D-sav~~~m~~--vd~VllGAda 277 (406)
..||.+|.+.-=..+...+.+.+..-+|++ .|++.|....... ..+++. +.| .++..+.++ +|.|+.|.+.
T Consensus 5 ~kvLviG~g~rehal~~~~~~~~~~~~~~~---~pgn~g~~~~~~~--~~~~~~-~~d~~~l~~~a~~~~iD~Vv~g~E~ 78 (426)
T PRK13789 5 LKVLLIGSGGRESAIAFALRKSNLLSELKV---FPGNGGFPDDELL--PADSFS-ILDKSSVQSFLKSNPFDLIVVGPED 78 (426)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCCEEEE---ECCchHHhccccc--cccCcC-cCCHHHHHHHHHHcCCCEEEECCch
Confidence 579999988766666666665665567777 4555553211000 111221 233 344444443 9999999877
Q ss_pred EeeC
Q 045642 278 VMAN 281 (406)
Q Consensus 278 v~~n 281 (406)
.+..
T Consensus 79 ~l~~ 82 (426)
T PRK13789 79 PLVA 82 (426)
T ss_pred HHHH
Confidence 6544
No 355
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=35.91 E-value=1.9e+02 Score=26.14 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=44.6
Q ss_pred EEEEecCCCCcchHHHHHHHHhCCCceEEEcchH-HHHHhhcCCEEEEc-ceeEeeCCCcccccchHHHHHHHh-hCCCc
Q 045642 227 EVFIADGAPKFEGHILAKELDKKGLKAIVITDSA-VFAMISRVNMVIVG-VHAVMANGGVIAPAGLHVLALAAK-KHDVP 303 (406)
Q Consensus 227 ~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsa-v~~~m~~vd~VllG-Adav~~nG~vvnk~GT~~lAl~Ak-~~~vP 303 (406)
+|.+++..+.+. ..+++.|.+.|+++.++.... -..-+..+|.+|++ --.. ....+-. ..++.+ ..++|
T Consensus 3 ~iliid~~dsf~-~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~------~~~~~~~-~~~i~~~~~~~P 74 (190)
T PRK06895 3 KLLIINNHDSFT-FNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDV------PRAYPQL-FAMLERYHQHKS 74 (190)
T ss_pred EEEEEeCCCchH-HHHHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCC------hHHhhHH-HHHHHHhcCCCC
Confidence 677887776654 348999999999999887211 12234567777743 2110 0112221 233322 34899
Q ss_pred eEEecCCcc
Q 045642 304 FVVVASTHE 312 (406)
Q Consensus 304 v~V~aes~K 312 (406)
++-+|=-+.
T Consensus 75 iLGIClG~Q 83 (190)
T PRK06895 75 ILGVCLGHQ 83 (190)
T ss_pred EEEEcHHHH
Confidence 999884433
No 356
>PRK05973 replicative DNA helicase; Provisional
Probab=35.88 E-value=2e+02 Score=27.57 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=58.5
Q ss_pred cccCcEEEecc-----ChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceE-------EE-cch-HHH
Q 045642 197 IHQNEVILTLG-----HSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAI-------VI-TDS-AVF 262 (406)
Q Consensus 197 I~~g~~ILT~g-----~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt-------~I-~Ds-av~ 262 (406)
+..|+.++..| .+.....|+..+.++|.+.-.+-.|-.| ..+...+.+.|++.. +. .|. ...
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~----~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~ 136 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTE----QDVRDRLRALGADRAQFADLFEFDTSDAICAD 136 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCH----HHHHHHHHHcCCChHHhccceEeecCCCCCHH
Confidence 45788777744 4556777888887666554344445443 244455555565421 11 111 112
Q ss_pred HHhh------cCCEEEEcceeEeeCCCcccccch--HHHHHHHhhCCCceEEecCCccc
Q 045642 263 AMIS------RVNMVIVGVHAVMANGGVIAPAGL--HVLALAAKKHDVPFVVVASTHEL 313 (406)
Q Consensus 263 ~~m~------~vd~VllGAdav~~nG~vvnk~GT--~~lAl~Ak~~~vPv~V~aes~K~ 313 (406)
+++. +.+.||+=-=..+..+.--...+. ..+-..||.+++|++++++...-
T Consensus 137 ~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~ 195 (237)
T PRK05973 137 YIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRS 195 (237)
T ss_pred HHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 2222 355555522111211100011222 33667899999999999876444
No 357
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=35.87 E-value=2.9e+02 Score=27.52 Aligned_cols=88 Identities=20% Similarity=0.237 Sum_probs=52.1
Q ss_pred HHHHHHhcccCcEEEeccChHHHHHHHHHHHH--cCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-----cchH--
Q 045642 190 AEQAMELIHQNEVILTLGHSKFVKEFLCAAKE--KKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-----TDSA-- 260 (406)
Q Consensus 190 ~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~--~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-----~Dsa-- 260 (406)
+++-.+.+.+|++ +.+|+.+|+.++...... ..++.+|+-+-+.+...... ...|+. +.+..++ .|+.
T Consensus 106 A~~L~~~l~~~~~-IGvswG~Tl~~~~~~l~~~~~~~~~~vV~l~Gg~~~~~~~-~~~~~~-~~~~~~l~aP~~v~s~e~ 182 (318)
T PRK15418 106 AHMLMSLLQPQQL-LAVGFGEATMNTLQHLSGFISSQQIRLVTLSGGVGPYMTG-IGQLDA-ACSVSIIPAPLRASSAEI 182 (318)
T ss_pred HHHHHHhcCCCCE-EEEcchHHHHHHHHhccccCCCCCCEEEEcCCCCCcchhh-HHHHhc-cCCeEEeccCeecCCHHH
Confidence 3444456678875 456999999999976642 34566777665554322222 224432 3333333 3332
Q ss_pred ------------HHHHhhcCCEEEEcceeEee
Q 045642 261 ------------VFAMISRVNMVIVGVHAVMA 280 (406)
Q Consensus 261 ------------v~~~m~~vd~VllGAdav~~ 280 (406)
+...++++|.+|+|.=.+..
T Consensus 183 ~~~l~~e~~i~~vl~~~~~~Dial~GIG~~~~ 214 (318)
T PRK15418 183 ARTLRNENSVRDVMLAAQAADVAIVGIGAVNQ 214 (318)
T ss_pred HHHHHhChHHHHHHHHHHhCCEEEEEecCCCC
Confidence 34556689999999877654
No 358
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=35.86 E-value=76 Score=30.83 Aligned_cols=97 Identities=21% Similarity=0.200 Sum_probs=59.9
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcch---HHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEccee
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG---HILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHA 277 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG---~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAda 277 (406)
.+||.+|.|+.+=..|..+.+ .+.+.|+.+ +|+...- ..+.+.+.+. +.|.||--|-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~-~~~~~v~~~-~r~~~dl~d~~~~~~~~~~~-----------------~pd~Vin~aa~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALK-ERGYEVIAT-SRSDLDLTDPEAVAKLLEAF-----------------KPDVVINCAAY 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHT-TTSEEEEEE-STTCS-TTSHHHHHHHHHHH-------------------SEEEE----
T ss_pred CEEEEECCCCHHHHHHHHHHh-hCCCEEEEe-CchhcCCCCHHHHHHHHHHh-----------------CCCeEecccee
Confidence 368999999999999998884 467888888 5542211 1222333322 24555444311
Q ss_pred Ee--------eCCCcccccchHHHHHHHhhCCCceEEecCCcccccc
Q 045642 278 VM--------ANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSL 316 (406)
Q Consensus 278 v~--------~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~ 316 (406)
.- ..-..+|-.|+..+|-+|+.++++++-++..+=|...
T Consensus 62 ~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~ 108 (286)
T PF04321_consen 62 TNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGD 108 (286)
T ss_dssp --HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SS
T ss_pred ecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCC
Confidence 00 0123477899999999999999999999887777543
No 359
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=35.85 E-value=2.5e+02 Score=26.20 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHH---cCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHH--HHHhhcCCEEEEcceeEeeCCC
Q 045642 209 SKFVKEFLCAAKE---KKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAV--FAMISRVNMVIVGVHAVMANGG 283 (406)
Q Consensus 209 S~tV~~~L~~A~~---~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav--~~~m~~vd~VllGAdav~~nG~ 283 (406)
+.+.+..+..|.+ .+.++-|=|.-+. +|...++.|.+.||+|...+--.+ +....++ ||+-|.+.=+
T Consensus 60 ~~~~e~~i~~a~~l~~~~~~~~iKIP~T~---~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~A-----GA~yvsP~vg 131 (211)
T cd00956 60 STDAEGMVAEARKLASLGGNVVVKIPVTE---DGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKA-----GATYVSPFVG 131 (211)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEEcCcH---hHHHHHHHHHHcCCceeeEEecCHHHHHHHHHc-----CCCEEEEecC
Confidence 4455666666553 2122222133333 899999999999988664433222 2222222 5666555444
Q ss_pred cccccchH------HHHHHHhhCCCceEEecCCcc
Q 045642 284 VIAPAGLH------VLALAAKKHDVPFVVVASTHE 312 (406)
Q Consensus 284 vvnk~GT~------~lAl~Ak~~~vPv~V~aes~K 312 (406)
-+...|-- .+.-+++.++.|.=+++.++|
T Consensus 132 R~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r 166 (211)
T cd00956 132 RIDDLGGDGMELIREIRTIFDNYGFDTKILAASIR 166 (211)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccC
Confidence 43333422 233455567777766666644
No 360
>PRK00078 Maf-like protein; Reviewed
Probab=35.80 E-value=2.1e+02 Score=26.42 Aligned_cols=93 Identities=15% Similarity=0.200 Sum_probs=57.0
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEe---cCCCCc--chHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEe-e
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKF--EGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVM-A 280 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~--eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~-~ 280 (406)
|.|.-=.++|+.+ |-.|+|+.. |+.+.. .-..++..|+..+-. ++..-+..-+.+|+|||.|. -
T Consensus 7 S~SprR~elL~~~---g~~f~v~~~~idE~~~~~~~~p~~~~~~lA~~KA~-------~v~~~~~~~~~lvI~aDTvV~~ 76 (192)
T PRK00078 7 SASERRQELLKRI---LEDFQVIVSDFDESSVPFKGNIESYVMNLAEGKAR-------SVSKKLDQESSIVIGCDTIVAF 76 (192)
T ss_pred CCCHHHHHHHHhC---CCCeEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhcCCCCCEEEEeCeEEEE
Confidence 5555555566554 678987754 343221 235678887764411 11111111246999999965 7
Q ss_pred CCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 281 NGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 281 nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
||-++.|-.+..-| ++-+..|....|.+.
T Consensus 77 ~g~ilgKP~~~eeA~~~L~~lsG~~h~V~Tg 107 (192)
T PRK00078 77 NGKVLGKPKDEEDAFEMLKALSGNEHEVYSG 107 (192)
T ss_pred CCEEeCCCCCHHHHHHHHHHHCCCcEEEEEE
Confidence 88899999888766 566667776666543
No 361
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=35.67 E-value=1.4e+02 Score=30.44 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=67.0
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEecCCCCcch----HHHHHHHHh-C-CCceEEEcchHH--HHHhhcCCEEEEcceeE
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG----HILAKELDK-K-GLKAIVITDSAV--FAMISRVNMVIVGVHAV 278 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG----~~~a~~L~~-~-GI~vt~I~Dsav--~~~m~~vd~VllGAdav 278 (406)
-...++..+++.|.+.+..+-+-+.++.=.+-| ..+++.+++ . +|||.+-.|-+- -.++.-++ .|-.+|
T Consensus 26 ~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~---~GFtSV 102 (347)
T PRK13399 26 NNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIR---SGFTSV 102 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHh---cCCCEE
Confidence 356688888888886666543333333223344 245555654 4 499999999763 34444444 499999
Q ss_pred eeCCCcc-----------cccchHHHHHHHhhCCCceEE
Q 045642 279 MANGGVI-----------APAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 279 ~~nG~vv-----------nk~GT~~lAl~Ak~~~vPv~V 306 (406)
+-||+-. |-.=|..++-.|+.+|++|=.
T Consensus 103 MiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEa 141 (347)
T PRK13399 103 MMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEG 141 (347)
T ss_pred EEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 9999988 778899999999999998863
No 362
>PRK09148 aminotransferase; Validated
Probab=35.65 E-value=2.9e+02 Score=28.00 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=54.1
Q ss_pred cccC-cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch-------HHHHHh---
Q 045642 197 IHQN-EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS-------AVFAMI--- 265 (406)
Q Consensus 197 I~~g-~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds-------av~~~m--- 265 (406)
+... .+++|.|.+..+..++....+.|. +|++. .|.+.+...+. ...|+++..++.. .+-..+
T Consensus 89 ~~~~~~I~it~G~~~al~~~~~~l~~~gd--~Vl~~--~P~y~~~~~~~--~~~g~~v~~v~~~~~~~~~~~l~~~~~~~ 162 (405)
T PRK09148 89 LNPDTQVVATLGSKEGFANMAQAITAPGD--VILCP--NPSYPIHAFGF--IMAGGVIRSVPAEPDEEFFPALERAVRHS 162 (405)
T ss_pred CCCCCcEEEcCChHHHHHHHHHHhcCCCC--EEEEc--CCCCcccHHHH--HhcCCEEEEEeCCCCCCCccCHHHHHhhc
Confidence 3344 688888888777666665554443 44443 57777643322 3468887766421 112222
Q ss_pred -hcCCEEEEcc-eeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 266 -SRVNMVIVGV-HAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 266 -~~vd~VllGA-dav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
++...|++-- + -+.|.++..-=-..++-.|+.+++.+++
T Consensus 163 ~~~~~~v~l~~P~--NPtG~~~s~~~l~~l~~~a~~~~~~ii~ 203 (405)
T PRK09148 163 IPKPIALIVNYPS--NPTAYVADLDFYKDVVAFAKKHDIIILS 203 (405)
T ss_pred cccceEEEEeCCC--CCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 2333333321 1 1234444433334566778888876654
No 363
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=35.51 E-value=2e+02 Score=25.03 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHcCCceEEEEecCCCCc--chHHHHHHHHhC---CCceEEEcch
Q 045642 209 SKFVKEFLCAAKEKKRSFEVFIADGAPKF--EGHILAKELDKK---GLKAIVITDS 259 (406)
Q Consensus 209 S~tV~~~L~~A~~~~~~f~ViV~EsrP~~--eG~~~a~~L~~~---GI~vt~I~Ds 259 (406)
+..+...|..|.++|.+.+|++-...-.. ........|.+. ||++..+...
T Consensus 52 ~~~l~~~L~~a~~rGv~V~il~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~ 107 (176)
T cd00138 52 GPVILDALLAAARRGVKVRILVDEWSNTDLKISSAYLDSLRALLDIGVRVFLIRTD 107 (176)
T ss_pred chHHHHHHHHHHHCCCEEEEEEcccccCCchHHHHHHHHHHHhhcCceEEEEEcCC
Confidence 67888889888888888887776554433 234566777765 7777666543
No 364
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=35.50 E-value=2.9e+02 Score=24.15 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhC-CCceEEEc------chHHHHHhh--cCCEEEEcceeEeeCC
Q 045642 212 VKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKK-GLKAIVIT------DSAVFAMIS--RVNMVIVGVHAVMANG 282 (406)
Q Consensus 212 V~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~-GI~vt~I~------Dsav~~~m~--~vd~VllGAdav~~nG 282 (406)
+..+.+...+.=..|+++.+++ +++.|.+. ||+|+.+. +..+..++. +++.||-=.|-. |
T Consensus 19 l~~~a~~l~~ll~Gf~l~AT~g--------Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp~---~ 87 (142)
T PRK05234 19 LVAWVKAHKDLLEQHELYATGT--------TGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPL---T 87 (142)
T ss_pred HHHHHHHHHHHhcCCEEEEeCh--------HHHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCCC---C
Confidence 3344444443312477776653 47888888 99887763 122333333 488887654321 2
Q ss_pred CcccccchHHHHHHHhhCCCceEEe
Q 045642 283 GVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 283 ~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
.--.....+.+--+|-.|+||++--
T Consensus 88 ~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 88 AQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred CCcccchHHHHHHHHHHcCCCEEcC
Confidence 1111344667888899999999853
No 365
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=35.45 E-value=1.1e+02 Score=28.61 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCccc-------ccchHHHHHHHhhCCCceEEecCCcc
Q 045642 240 HILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIA-------PAGLHVLALAAKKHDVPFVVVASTHE 312 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvn-------k~GT~~lAl~Ak~~~vPv~V~aes~K 312 (406)
+.+++.|...|+++.++.+.. -+.++|.+|++- ++-.. +.|-.....-+-+.++|++-+|--|-
T Consensus 15 ~sl~~al~~~g~~v~vv~~~~---~l~~~d~iIlPG------~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Q 85 (210)
T CHL00188 15 HSVSRAIQQAGQQPCIINSES---ELAQVHALVLPG------VGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLH 85 (210)
T ss_pred HHHHHHHHHcCCcEEEEcCHH---HhhhCCEEEECC------CCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHH
Confidence 577889999999999997743 235677766642 12111 22432222333346899999998776
Q ss_pred ccc
Q 045642 313 LCS 315 (406)
Q Consensus 313 ~~~ 315 (406)
+--
T Consensus 86 ll~ 88 (210)
T CHL00188 86 LLF 88 (210)
T ss_pred HHh
Confidence 653
No 366
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=35.45 E-value=3.5e+02 Score=26.12 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=52.7
Q ss_pred HHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHH-HHHhCCCceEEEcc-------hHHHHHh
Q 045642 194 MELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAK-ELDKKGLKAIVITD-------SAVFAMI 265 (406)
Q Consensus 194 ~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~-~L~~~GI~vt~I~D-------sav~~~m 265 (406)
++++...+.++|.|.+.....++.... ++.-+|++.+ |.+.....+. ...-.|+++..++. ..+...+
T Consensus 42 a~~~g~~~~~~~~~gt~a~~~~~~~l~--~~gd~v~~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i 117 (338)
T cd06502 42 AELFGKEAALFVPSGTAANQLALAAHT--QPGGSVICHE--TAHIYTDEAGAPEFLSGVKLLPVPGENGKLTPEDLEAAI 117 (338)
T ss_pred HHHhCCCeEEEecCchHHHHHHHHHhc--CCCCeEEEec--CcceeeecCCcHHHHcCceEEeecCCCCcCCHHHHHHHh
Confidence 344445678888777766555555444 3334566543 3332211111 11126887776642 2333333
Q ss_pred h--------cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 266 S--------RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 266 ~--------~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
. +...|++- . ....|+++...--..++-.|+.++++++|
T Consensus 118 ~~~~~~~~~~~~~v~l~-~-p~n~g~~~~~~~l~~i~~~~~~~~~~liv 164 (338)
T cd06502 118 RPRDDIHFPPPSLVSLE-N-TTEGGTVYPLDELKAISALAKENGLPLHL 164 (338)
T ss_pred hccCCCcCCcceEEEEE-e-ecCCccccCHHHHHHHHHHHHHcCCeEee
Confidence 3 22233322 1 22235544333334466788888988876
No 367
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=35.38 E-value=1.8e+02 Score=26.71 Aligned_cols=22 Identities=9% Similarity=0.145 Sum_probs=18.2
Q ss_pred chHHHHHHHhhCCCceEEecCC
Q 045642 289 GLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 289 GT~~lAl~Ak~~~vPv~V~aes 310 (406)
-...++-.||.+|+|+++++..
T Consensus 126 ~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 126 NIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred HHHHHHHHHHHCCCeEEEEeCC
Confidence 3556778999999999999864
No 368
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=35.36 E-value=96 Score=29.24 Aligned_cols=99 Identities=20% Similarity=0.130 Sum_probs=50.8
Q ss_pred EEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCC
Q 045642 203 ILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANG 282 (406)
Q Consensus 203 ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG 282 (406)
||+.|.+..+=..|.....+ +..+|+++...+....... ..+ +..+.+....-.+..+|.|+--|-....++
T Consensus 1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~D~Vvh~a~~~~~~~ 72 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTK-DGHEVTILTRSPPAGANTK-----WEG--YKPWAPLAESEALEGADAVINLAGEPIADK 72 (292)
T ss_pred CEEEcccchhhHHHHHHHHH-cCCEEEEEeCCCCCCCccc-----cee--eecccccchhhhcCCCCEEEECCCCCcccc
Confidence 45566666555544443311 2367777665444321110 011 111111223344567888886654332222
Q ss_pred Cc----------ccccchHHHHHHHhhCCC-c-eEEecC
Q 045642 283 GV----------IAPAGLHVLALAAKKHDV-P-FVVVAS 309 (406)
Q Consensus 283 ~v----------vnk~GT~~lAl~Ak~~~v-P-v~V~ae 309 (406)
.. .|-.||..++-+|+.+++ + +++.+.
T Consensus 73 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S 111 (292)
T TIGR01777 73 RWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISAS 111 (292)
T ss_pred cCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEee
Confidence 21 367789999999999987 4 444333
No 369
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=35.29 E-value=2.8e+02 Score=24.63 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=63.0
Q ss_pred cEEEeccC--------hHHHHHHHHHHHHcCCceEEEEecCCCC------------cchHHHHHHHHhCCCceEEEcch-
Q 045642 201 EVILTLGH--------SKFVKEFLCAAKEKKRSFEVFIADGAPK------------FEGHILAKELDKKGLKAIVITDS- 259 (406)
Q Consensus 201 ~~ILT~g~--------S~tV~~~L~~A~~~~~~f~ViV~EsrP~------------~eG~~~a~~L~~~GI~vt~I~Ds- 259 (406)
.+++|+|+ =..+.++...|.+.+..--|+.-+..|. ..-..=.+.|.+.||+..++.|=
T Consensus 6 ~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F~ 85 (157)
T PF06574_consen 6 KSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPFT 85 (157)
T ss_dssp -EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-CC
T ss_pred CcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecch
Confidence 46777654 3456666677776666666777777762 22345678899999998777552
Q ss_pred -HH---------HHHhh---cCCEEEEcceeEeeCCCcccccc-hHHHHHHHhhCCCceEEec
Q 045642 260 -AV---------FAMIS---RVNMVIVGVHAVMANGGVIAPAG-LHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 260 -av---------~~~m~---~vd~VllGAdav~~nG~vvnk~G-T~~lAl~Ak~~~vPv~V~a 308 (406)
.. -.++. ++..+++|.|-=+.. ++.| ...+.-.++.+++.|.++-
T Consensus 86 ~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~----~~~G~~~~L~~~~~~~g~~v~~v~ 144 (157)
T PF06574_consen 86 EEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGK----NRSGDVELLKELGKEYGFEVEVVP 144 (157)
T ss_dssp CHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESG----GGEEEHHHHHHCTTTT-SEEEEE-
T ss_pred HHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCC----CCCCCHHHHHHhcccCceEEEEEC
Confidence 11 12222 478899999998854 3344 4455567778889998864
No 370
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=35.23 E-value=30 Score=33.62 Aligned_cols=38 Identities=8% Similarity=0.189 Sum_probs=21.1
Q ss_pred hhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecC
Q 045642 265 ISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVAS 309 (406)
Q Consensus 265 m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ae 309 (406)
-+++|.+++..|..+. + . ...+...+..+++|||...+
T Consensus 182 ~~~~da~~~~~~~~~~-----~-~-~~~i~~~~~~~~iPv~~~~~ 219 (294)
T PF04392_consen 182 AEKVDALYLLPDNLVD-----S-N-FEAILQLANEAKIPVFGSSD 219 (294)
T ss_dssp CTT-SEEEE-S-HHHH-----H-T-HHHHHHHCCCTT--EEESSH
T ss_pred hccCCEEEEECCcchH-----h-H-HHHHHHHHHhcCCCEEECCH
Confidence 3567888887665432 2 2 22267788999999998654
No 371
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=35.06 E-value=1.5e+02 Score=30.14 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=67.9
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEecCCCCcch----HHHHHHHHh-C-CCceEEEcchHH--HHHhhcCCEEEEcceeE
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEG----HILAKELDK-K-GLKAIVITDSAV--FAMISRVNMVIVGVHAV 278 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG----~~~a~~L~~-~-GI~vt~I~Dsav--~~~m~~vd~VllGAdav 278 (406)
-...++..+++.|.+.+...-+-+.++.=.+-| ..+++.+++ . .|||.+-.|-+- -.++.-++ .|-.+|
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~---~GftSV 102 (347)
T PRK09196 26 NNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQ---LGFTSV 102 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHH---cCCCEE
Confidence 456788888888887666543333333222333 345566654 3 499999999763 33343333 499999
Q ss_pred eeCCCcc-----------cccchHHHHHHHhhCCCceEE
Q 045642 279 MANGGVI-----------APAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 279 ~~nG~vv-----------nk~GT~~lAl~Ak~~~vPv~V 306 (406)
+-||+-. |-.=|..++-.|+.+|++|=.
T Consensus 103 MiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEa 141 (347)
T PRK09196 103 MMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEG 141 (347)
T ss_pred EecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 9999998 888999999999999998863
No 372
>PRK14012 cysteine desulfurase; Provisional
Probab=34.91 E-value=4.9e+02 Score=26.24 Aligned_cols=101 Identities=14% Similarity=0.236 Sum_probs=51.9
Q ss_pred cEEEeccChHHHHHHHHHHHH--cCCceEEEEecCCCCcch-HHHHHHHHhCCCceEEEcc--------hHHHHHhhcCC
Q 045642 201 EVILTLGHSKFVKEFLCAAKE--KKRSFEVFIADGAPKFEG-HILAKELDKKGLKAIVITD--------SAVFAMISRVN 269 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~--~~~~f~ViV~EsrP~~eG-~~~a~~L~~~GI~vt~I~D--------sav~~~m~~vd 269 (406)
.+++|-|.+..+..++..+.+ .+..-+|++. .+.+.. ...++.+...|+++..++. ..+...+..-+
T Consensus 68 ~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~--~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t 145 (404)
T PRK14012 68 EIVFTSGATESDNLAIKGAAHFYQKKGKHIITS--KTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDT 145 (404)
T ss_pred eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEe--cCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCC
Confidence 467776666555555544321 1233355554 333433 3445566677998887732 12223333323
Q ss_pred EEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 270 MVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 270 ~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
++++-.+.-...| .+..+ -.++-+|+.++++|++
T Consensus 146 ~lv~~~~~~n~tG-~~~~~--~~I~~la~~~g~~viv 179 (404)
T PRK14012 146 ILVSIMHVNNEIG-VIQDI--AAIGEICRERGIIFHV 179 (404)
T ss_pred EEEEEECcCCCcc-chhhH--HHHHHHHHHcCCEEEE
Confidence 4443332222223 33332 4577788999988887
No 373
>PRK08175 aminotransferase; Validated
Probab=34.86 E-value=1.2e+02 Score=30.57 Aligned_cols=92 Identities=21% Similarity=0.270 Sum_probs=51.0
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc-ch------HHHHHhh----cCC
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT-DS------AVFAMIS----RVN 269 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~-Ds------av~~~m~----~vd 269 (406)
.+|+|.|.+..+..++....+.|. +|++. +|.+.+..... ...|+++..++ |. .+...++ ++.
T Consensus 93 ~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~~--~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~ 166 (395)
T PRK08175 93 EAIVTIGSKEGLAHLMLATLDHGD--TVLVP--NPSYPIHIYGA--VIAGAQVRSVPLVEGVDFFNELERAIRESYPKPK 166 (395)
T ss_pred cEEEccCcHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHHH--HHcCCeEEEEecccCCCcHHHHHHHHhhccCCce
Confidence 578888877766665555443342 44443 67666643332 34688777663 21 1222222 222
Q ss_pred EEEEcceeEeeCCCcccccch-------HHHHHHHhhCCCceEE
Q 045642 270 MVIVGVHAVMANGGVIAPAGL-------HVLALAAKKHDVPFVV 306 (406)
Q Consensus 270 ~VllGAdav~~nG~vvnk~GT-------~~lAl~Ak~~~vPv~V 306 (406)
.|++ + ..-|..|+ ..++-.|+++++++++
T Consensus 167 ~v~i-------~-~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~ 202 (395)
T PRK08175 167 MMIL-------G-FPSNPTAQCVELEFFEKVVALAKRYDVLVVH 202 (395)
T ss_pred EEEE-------e-CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 3332 2 23456664 5777789999997775
No 374
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=34.73 E-value=5.2e+02 Score=26.46 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcc--cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHh---CCCceEEEcch-H
Q 045642 187 EGIAEQAMELIH--QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDK---KGLKAIVITDS-A 260 (406)
Q Consensus 187 ~~I~~~a~~~I~--~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~---~GI~vt~I~Ds-a 260 (406)
+.++..-+.+|. .++++.+-+-|.++.+.|..+.+...+-+|||.|+.-.-.+.-+|+-|++ .|.++..+..- +
T Consensus 79 ~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P~~ 158 (407)
T COG3844 79 ERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAPRA 158 (407)
T ss_pred hHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeChHH
Confidence 456777777774 67899999999999999999986555668999998777666666665554 33455544332 4
Q ss_pred HHHHhhcCCEEEEc
Q 045642 261 VFAMISRVNMVIVG 274 (406)
Q Consensus 261 v~~~m~~vd~VllG 274 (406)
+.-.+.+=..|++=
T Consensus 159 ~~~~~~dd~AvV~L 172 (407)
T COG3844 159 LEEAITDDVAVVLL 172 (407)
T ss_pred HHHhhccceEEEEe
Confidence 44444333334433
No 375
>PRK15029 arginine decarboxylase; Provisional
Probab=34.71 E-value=1.7e+02 Score=32.97 Aligned_cols=89 Identities=12% Similarity=0.151 Sum_probs=55.5
Q ss_pred EEEEecCCCCc-------chHHHHHHHHhCCCceEEEcchH--HHHHhh--cCCEEEEcceeEeeCCCcccccchHHHHH
Q 045642 227 EVFIADGAPKF-------EGHILAKELDKKGLKAIVITDSA--VFAMIS--RVNMVIVGVHAVMANGGVIAPAGLHVLAL 295 (406)
Q Consensus 227 ~ViV~EsrP~~-------eG~~~a~~L~~~GI~vt~I~Dsa--v~~~m~--~vd~VllGAdav~~nG~vvnk~GT~~lAl 295 (406)
+|.++|..+.. -...+...|.+.|..|....+.. ...+-. +.|.||+ |.-+.++.-.. .|...+-.
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL--D~~LPd~dG~~-~~~ell~~ 78 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF--SYQMEHPDEHQ-NVRQLIGK 78 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE--ECCCCCCccch-hHHHHHHH
Confidence 57888888752 23678899999999999988743 333322 4799998 45566655222 12222222
Q ss_pred HHh-hCCCceEEecCCccccccCC
Q 045642 296 AAK-KHDVPFVVVASTHELCSLYP 318 (406)
Q Consensus 296 ~Ak-~~~vPv~V~aes~K~~~~~~ 318 (406)
+-+ ..++|||+++..-+-.+..+
T Consensus 79 IR~~~~~iPIIlLTar~~~~~~~~ 102 (755)
T PRK15029 79 LHERQQNVPVFLLGDREKALAAMD 102 (755)
T ss_pred HHhhCCCCCEEEEEcCCcccccCC
Confidence 322 35899999987764333333
No 376
>PRK07340 ornithine cyclodeaminase; Validated
Probab=34.65 E-value=1.8e+02 Score=28.63 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=49.1
Q ss_pred HHHHHHHhcc--cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhh
Q 045642 189 IAEQAMELIH--QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMIS 266 (406)
Q Consensus 189 I~~~a~~~I~--~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~ 266 (406)
++..+.+++. +..+|+.+|....-...+.........-+|+|..-.| ..-..++.++.+.|+++. . ++ ....+.
T Consensus 112 ~sala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~-~~a~~~a~~~~~~~~~~~-~-~~-~~~av~ 187 (304)
T PRK07340 112 VSLLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTA-ASAAAFCAHARALGPTAE-P-LD-GEAIPE 187 (304)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCH-HHHHHHHHHHHhcCCeeE-E-CC-HHHHhh
Confidence 3445556663 4568888998776666666654322223456654332 334678888887777766 2 22 233457
Q ss_pred cCCEEEEc
Q 045642 267 RVNMVIVG 274 (406)
Q Consensus 267 ~vd~VllG 274 (406)
++|.|+..
T Consensus 188 ~aDiVita 195 (304)
T PRK07340 188 AVDLVVTA 195 (304)
T ss_pred cCCEEEEc
Confidence 89998873
No 377
>PRK10637 cysG siroheme synthase; Provisional
Probab=34.43 E-value=1.6e+02 Score=30.97 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=62.2
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeE
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav 278 (406)
.|..||..|......+=++...+.|.+++|+- |..... .+.|.+.| .++++...-....+..++.|+...|-=
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga~v~vis----p~~~~~--~~~l~~~~-~i~~~~~~~~~~dl~~~~lv~~at~d~ 83 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGARLTVNA----LAFIPQ--FTAWADAG-MLTLVEGPFDESLLDTCWLAIAATDDD 83 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEc----CCCCHH--HHHHHhCC-CEEEEeCCCChHHhCCCEEEEECCCCH
Confidence 57789999999888776777666777776663 332211 23455444 567776655556677788877776432
Q ss_pred eeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 279 MANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 279 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
- + ...++..|+..+++|.++-
T Consensus 84 ~-----~----n~~i~~~a~~~~~lvN~~d 104 (457)
T PRK10637 84 A-----V----NQRVSEAAEARRIFCNVVD 104 (457)
T ss_pred H-----H----hHHHHHHHHHcCcEEEECC
Confidence 2 2 2467888999999998764
No 378
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=34.38 E-value=1.4e+02 Score=29.50 Aligned_cols=50 Identities=10% Similarity=0.145 Sum_probs=30.1
Q ss_pred EEEeccChHHHHHHHHHHHHcCC-ceEEEEecC-CCCcchHHHHHHHHhCCCceEEEc
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKR-SFEVFIADG-APKFEGHILAKELDKKGLKAIVIT 257 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~-~f~ViV~Es-rP~~eG~~~a~~L~~~GI~vt~I~ 257 (406)
.||..|..+..++++.... .|. +.+|.++-| +|...+. ..+.|||+.+++
T Consensus 93 ~vl~Sg~g~nl~al~~~~~-~~~~~~~i~~visn~~~~~~l-----A~~~gIp~~~~~ 144 (286)
T PRK13011 93 LIMVSKFDHCLNDLLYRWR-IGELPMDIVGVVSNHPDLEPL-----AAWHGIPFHHFP 144 (286)
T ss_pred EEEEcCCcccHHHHHHHHH-cCCCCcEEEEEEECCccHHHH-----HHHhCCCEEEeC
Confidence 4666666666666665554 553 566665544 6653221 456799999873
No 379
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=34.31 E-value=4.9e+02 Score=26.05 Aligned_cols=108 Identities=18% Similarity=0.278 Sum_probs=54.6
Q ss_pred HhcccCcEEEeccChHHHHHHHHHHHH----cC--CceEEEEecCCCCcchHHHHH-HHHh-----CCC-----ceEEE-
Q 045642 195 ELIHQNEVILTLGHSKFVKEFLCAAKE----KK--RSFEVFIADGAPKFEGHILAK-ELDK-----KGL-----KAIVI- 256 (406)
Q Consensus 195 ~~I~~g~~ILT~g~S~tV~~~L~~A~~----~~--~~f~ViV~EsrP~~eG~~~a~-~L~~-----~GI-----~vt~I- 256 (406)
++...+.+++|.|.|..++..++.|.. .| .+.+|++.+ |.+.|..... .+.. .+. .+..+
T Consensus 84 ~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~--~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (389)
T PRK01278 84 ENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFE--GAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVP 161 (389)
T ss_pred hhCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEEC--CCcCCCcHHHHhccCChhhcccCCCCCCCceEeC
Confidence 333334688889999999999888742 23 245677765 3444432222 1110 010 11222
Q ss_pred -cch-HHHHHh-hcCCEEEEcceeEeeCCCcccccc--hHHHHHHHhhCCCceEE
Q 045642 257 -TDS-AVFAMI-SRVNMVIVGVHAVMANGGVIAPAG--LHVLALAAKKHDVPFVV 306 (406)
Q Consensus 257 -~Ds-av~~~m-~~vd~VllGAdav~~nG~vvnk~G--T~~lAl~Ak~~~vPv~V 306 (406)
+|- ++-..+ +++-.|++- -+...||+.--.. -..++-+|++|++.+++
T Consensus 162 ~~d~~~l~~~l~~~~~avive--p~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~ 214 (389)
T PRK01278 162 FGDIEALKAAITPNTAAILIE--PIQGEGGIRPAPDEFLKGLRQLCDENGLLLIF 214 (389)
T ss_pred CCCHHHHHHhhCCCeEEEEEe--cccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 232 223333 234445554 3445555322112 23455679999998874
No 380
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=34.28 E-value=92 Score=28.44 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=45.0
Q ss_pred eEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccc-------cchHHHHHHHh
Q 045642 226 FEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAP-------AGLHVLALAAK 298 (406)
Q Consensus 226 f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk-------~GT~~lAl~Ak 298 (406)
..|++..+.+. .+.+.|...|..+.++++. .-+.++|.|+++ ||--.. .+-..+...+.
T Consensus 4 ~~i~~~~g~~~----~~~~~l~~~g~~~~~~~~~---~~l~~~dgiii~-------GG~~~~~~~~~~~~~~~~~i~~~~ 69 (189)
T PRK13525 4 IGVLALQGAVR----EHLAALEALGAEAVEVRRP---EDLDEIDGLILP-------GGESTTMGKLLRDFGLLEPLREFI 69 (189)
T ss_pred EEEEEcccCHH----HHHHHHHHCCCEEEEeCCh---hHhccCCEEEEC-------CCChHHHHHHHHhccHHHHHHHHH
Confidence 44555544332 3456688899999999874 235667777774 332111 11112223445
Q ss_pred hCCCceEEecCCccccc
Q 045642 299 KHDVPFVVVASTHELCS 315 (406)
Q Consensus 299 ~~~vPv~V~aes~K~~~ 315 (406)
..++|++-+|--+-+.-
T Consensus 70 ~~g~PilGIC~G~QlL~ 86 (189)
T PRK13525 70 ASGLPVFGTCAGMILLA 86 (189)
T ss_pred HCCCeEEEECHHHHHHH
Confidence 67899999997775544
No 381
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=34.25 E-value=96 Score=27.85 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCceEEEcchHHHHH---hhcCCEEEE-cceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCcccc
Q 045642 240 HILAKELDKKGLKAIVITDSAVFAM---ISRVNMVIV-GVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELC 314 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Dsav~~~---m~~vd~Vll-GAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~ 314 (406)
..+++.|.+.|+++.+++...-... ..++|.||+ |.. |+ ....+.+...+-+-..++||+-+|=-+-+.
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~-----~~-~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll 84 (184)
T cd01743 12 YNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGP-----GH-PEDAGISLEIIRALAGKVPILGVCLGHQAI 84 (184)
T ss_pred HHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCC-----CC-cccchhHHHHHHHHhcCCCEEEECHhHHHH
Confidence 4577888888999988877644332 356888777 322 11 112222222222223579999998665553
No 382
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=34.19 E-value=1.4e+02 Score=28.93 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=24.0
Q ss_pred cccccchHHHHHHHhhCCCceEEecCCccc
Q 045642 284 VIAPAGLHVLALAAKKHDVPFVVVASTHEL 313 (406)
Q Consensus 284 vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~ 313 (406)
-+|..||..++-+|+.++++|+.++..+=|
T Consensus 79 ~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy 108 (299)
T PRK09987 79 LLNATSVEAIAKAANEVGAWVVHYSTDYVF 108 (299)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEccceEE
Confidence 368889999999999999988776655433
No 383
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=34.18 E-value=1.1e+02 Score=33.53 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=25.3
Q ss_pred HHHHHHHhcccCcEEEeccChHHHHHHHHHHH
Q 045642 189 IAEQAMELIHQNEVILTLGHSKFVKEFLCAAK 220 (406)
Q Consensus 189 I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~ 220 (406)
+...-+++.++|.++.||+.+..|++-|..|.
T Consensus 188 ~~~~l~~~~~~~~~~~t~t~a~~vr~~l~~~G 219 (662)
T PRK01747 188 LFNALARLARPGATLATFTSAGFVRRGLQEAG 219 (662)
T ss_pred HHHHHHHHhCCCCEEEEeehHHHHHHHHHHcC
Confidence 33344456778999999999999999998774
No 384
>PRK00942 acetylglutamate kinase; Provisional
Probab=34.02 E-value=4.1e+02 Score=25.73 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=62.7
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceE--EEEecCC--CCc----ch---HHHHHHHHhCCCceEEEc------------
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFE--VFIADGA--PKF----EG---HILAKELDKKGLKAIVIT------------ 257 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~--ViV~Esr--P~~----eG---~~~a~~L~~~GI~vt~I~------------ 257 (406)
..|++||..+.+-..+...... .++. +.++... +.. -| ..+...|.+.|++..-++
T Consensus 57 ~vVlVhGgg~~~~~~~~~~g~~-~~~~~g~~~t~~~~l~~~~~a~~G~l~~~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~ 135 (283)
T PRK00942 57 NPVVVHGGGPQIDELLKKLGIE-SEFVNGLRVTDAETMEVVEMVLAGKVNKELVSLINKHGGKAVGLSGKDGGLITAKKL 135 (283)
T ss_pred CEEEEeCChHHHHHHHHHCCCC-cEeeCCEecCCHHHHHHHHHHHcCchHHHHHHHHHhCCCCccceeeccCCEEEEEEC
Confidence 5799999999888877755422 1221 1111110 100 02 346678888888755333
Q ss_pred ----------------chHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 258 ----------------DSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 258 ----------------Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
-..+..++..-..+|+..=++-.+|.+.+--+=...+.+|+..+..-+++
T Consensus 136 ~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~ 201 (283)
T PRK00942 136 EEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLIL 201 (283)
T ss_pred CCCCCCccccceEEECHHHHHHHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEE
Confidence 12344455555667776545556777777666666778999999874443
No 385
>PRK12743 oxidoreductase; Provisional
Probab=33.91 E-value=1.2e+02 Score=28.21 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=46.4
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc----hHHHHHh-------hc
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD----SAVFAMI-------SR 267 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D----sav~~~m-------~~ 267 (406)
+.+||+.|.|+.+=..+..... .+..+|+++..++......+...+...|..+.++ .| .++..++ .+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~-~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLA-QQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3577888887776665544431 2346888887776666667778888777666554 33 2232323 24
Q ss_pred CCEEEEcc
Q 045642 268 VNMVIVGV 275 (406)
Q Consensus 268 vd~VllGA 275 (406)
+|.+|..|
T Consensus 81 id~li~~a 88 (256)
T PRK12743 81 IDVLVNNA 88 (256)
T ss_pred CCEEEECC
Confidence 67777655
No 386
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.88 E-value=2.8e+02 Score=29.10 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=48.3
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEe
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVM 279 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~ 279 (406)
|..|+++|...+=....+.+.+ +..+|++.|.++...-.. ..+|.+ ++......... -.+..+|.||++.-- -
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~--~g~~v~~~d~~~~~~~~~-~~~l~~-~~~~~~~~~~~--~~~~~~d~vV~SpgI-~ 80 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRA--HLPAQALTLFCNAVEARE-VGALAD-AALLVETEASA--QRLAAFDVVVKSPGI-S 80 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHH--cCCEEEEEcCCCcccchH-HHHHhh-cCEEEeCCCCh--HHccCCCEEEECCCC-C
Confidence 5567776654433333333433 346789999887643222 334665 44444433332 234678888776522 1
Q ss_pred eCCCcccccchHHHHHHHhhCCCceEE
Q 045642 280 ANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 280 ~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
. +.+.-..|+..++||+-
T Consensus 81 ~---------~~p~~~~a~~~~i~i~~ 98 (468)
T PRK04690 81 P---------YRPEALAAAARGTPFIG 98 (468)
T ss_pred C---------CCHHHHHHHHcCCcEEE
Confidence 1 23445556666666663
No 387
>PRK09135 pteridine reductase; Provisional
Probab=33.86 E-value=88 Score=28.65 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=55.5
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCC-CceE-EEcc----hHHHHHhh------
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKG-LKAI-VITD----SAVFAMIS------ 266 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~G-I~vt-~I~D----sav~~~m~------ 266 (406)
.+.+||..|.++.+=..+..... .+..+|+++..+.......+++.+...+ -.+. +..| ..+..++.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~-~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLH-AAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35678888888777776655542 2356888887655444445556665432 1222 2223 34444444
Q ss_pred -cCCEEEEcceeEee----CCCc--------ccccchHHHHHHHh
Q 045642 267 -RVNMVIVGVHAVMA----NGGV--------IAPAGLHVLALAAK 298 (406)
Q Consensus 267 -~vd~VllGAdav~~----nG~v--------vnk~GT~~lAl~Ak 298 (406)
++|.|+-.|-.... +-.. +|-.|+..+.-++.
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~ 128 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAA 128 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHH
Confidence 46777766532111 0001 57888888887775
No 388
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=33.84 E-value=1.9e+02 Score=27.40 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=55.5
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCc----eEEEEecCCCCcchHHHHHHHHhCCCceEEEcc----hHHHHHhhcCCEEE
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRS----FEVFIADGAPKFEGHILAKELDKKGLKAIVITD----SAVFAMISRVNMVI 272 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~----f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D----sav~~~m~~vd~Vl 272 (406)
|.|+..| -..|+.++..+...++. .+++++ |..+|+.|.+.|+.+.++++ ....-.++.-...
T Consensus 52 d~vvfTS-~~av~~~~~~l~~~~~~~~~~~~i~aV-------G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~- 122 (248)
T COG1587 52 DWVVFTS-PNAVRFFFEALKEQGLDALKNKKIAAV-------GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKG- 122 (248)
T ss_pred CEEEEEC-HHHHHHHHHHHHhhcccccccCeEEEE-------cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccC-
Confidence 4444333 34677778777766643 455554 89999999999999999977 3344444443221
Q ss_pred EcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 273 VGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 273 lGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
|....+. ....|.-.+.---...|+.|.. ++.|.-.|
T Consensus 123 -~~~vl~~----~~~~~r~~l~~~L~~~G~~v~~-~~~Y~~~~ 159 (248)
T COG1587 123 -GKRVLIL----RGNGGREVLEEKLEERGAEVRE-VEVYRTEP 159 (248)
T ss_pred -CCeEEEE----cCCCchHHHHHHHHhCCCEEEE-EeeeeecC
Confidence 2222222 2233333444444455555553 23444444
No 389
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=33.81 E-value=3.1e+02 Score=24.90 Aligned_cols=74 Identities=8% Similarity=0.095 Sum_probs=48.1
Q ss_pred ccChHHHHHHHHHHHHcCCceEEEEecCCCCc---chHHHHHHHHhCCCceEEEcc-------hHHHHHhhcCCEEEEcc
Q 045642 206 LGHSKFVKEFLCAAKEKKRSFEVFIADGAPKF---EGHILAKELDKKGLKAIVITD-------SAVFAMISRVNMVIVGV 275 (406)
Q Consensus 206 ~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~---eG~~~a~~L~~~GI~vt~I~D-------sav~~~m~~vd~VllGA 275 (406)
-+....+.+.|..|.+.+-+. |++-=..|++ .+..+...+....+||..+.. |+.++++--+|+.++-.
T Consensus 12 ~~~~~~l~~~l~~A~~~~~~~-i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p 90 (172)
T cd07015 12 SYTYDQFDRYITIAEQDNAEA-IIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAP 90 (172)
T ss_pred HhHHHHHHHHHHHHhcCCCCe-EEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECC
Confidence 344557788888887554333 3333455664 567888899989999887776 44455556677766655
Q ss_pred eeEee
Q 045642 276 HAVMA 280 (406)
Q Consensus 276 dav~~ 280 (406)
.+.+.
T Consensus 91 ~s~iG 95 (172)
T cd07015 91 GTSIG 95 (172)
T ss_pred CCEEE
Confidence 55443
No 390
>PRK02141 Maf-like protein; Reviewed
Probab=33.76 E-value=2.2e+02 Score=26.63 Aligned_cols=97 Identities=22% Similarity=0.224 Sum_probs=59.9
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEe---cCCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHh-hcCCEEEEcce
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFE-GHILAKELDKKGLKAIVITDSAVFAMI-SRVNMVIVGVH 276 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m-~~vd~VllGAd 276 (406)
.|| -|.|..=.++|+.+ |-.|.|+.. |+....+ -..++..|+..+-. ++..-+ ..-+.+|||||
T Consensus 11 iIL-AS~SprR~elL~~~---G~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~-------~v~~~l~~~~~~iVI~aD 79 (207)
T PRK02141 11 LIL-ASSSRYRRELLERL---RLPFDVVSPDIDETPLAGETPAATALRLAAAKAR-------AVAATIDAPPGALVIGSD 79 (207)
T ss_pred EEE-eCCCHHHHHHHHHC---CCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhhccCCCCEEEEeC
Confidence 454 46666666666654 678987754 3332223 35777777765421 111111 12467999999
Q ss_pred eEe-eCCCcccccchHHHH--HHHhhCCCceEEecC
Q 045642 277 AVM-ANGGVIAPAGLHVLA--LAAKKHDVPFVVVAS 309 (406)
Q Consensus 277 av~-~nG~vvnk~GT~~lA--l~Ak~~~vPv~V~ae 309 (406)
.|. -||.++.|-.+..=| ++.+..|...-|.+.
T Consensus 80 TvV~~~g~ilgKP~~~~eA~~mL~~lsG~~H~V~Tg 115 (207)
T PRK02141 80 QVATFDGLQIGKPGTHERALAQLQAMRGRTVEFHSA 115 (207)
T ss_pred eEEEECCEEecCCCCHHHHHHHHHHhCCCceEEEEE
Confidence 965 789999999998776 566666776655443
No 391
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=33.57 E-value=1.2e+02 Score=31.19 Aligned_cols=73 Identities=11% Similarity=0.181 Sum_probs=42.6
Q ss_pred eEEEEecCCCCcchHHHHHHHHhCCCceE-EEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCce
Q 045642 226 FEVFIADGAPKFEGHILAKELDKKGLKAI-VITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPF 304 (406)
Q Consensus 226 f~ViV~EsrP~~eG~~~a~~L~~~GI~vt-~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv 304 (406)
.+|.++-.-|...-..+.+.|.+.||++. .++|....-+ ++... +..++ ++...+....-.+.++|++|.
T Consensus 156 ~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d~~~~~~-~~~~~----a~~~~----~~~~~~~~~A~~Le~r~giP~ 226 (396)
T cd01979 156 RSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPPRRYTDL-PVIGP----GTYVL----GIQPFLSRTATTLMRRRKCKL 226 (396)
T ss_pred CceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCCCChHHh-hccCc----ceEEE----EeChhHHHHHHHHHHhcCCCc
Confidence 44554443333333688889999999997 7788755433 22211 00011 112334455667888999999
Q ss_pred EEe
Q 045642 305 VVV 307 (406)
Q Consensus 305 ~V~ 307 (406)
+.+
T Consensus 227 ~~~ 229 (396)
T cd01979 227 LSA 229 (396)
T ss_pred ccC
Confidence 874
No 392
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=33.57 E-value=3.3e+02 Score=27.21 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=21.9
Q ss_pred EEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 270 MVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 270 ~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
.+++-.+.+...+|.+.. -..++-+|++++++++|
T Consensus 144 ~~~v~v~~v~s~~G~i~p--l~eI~~l~~~~~~~liv 178 (370)
T PRK05937 144 RIFIFVCSVYSFKGTLAP--LEQIIALSKKYHAHLIV 178 (370)
T ss_pred cEEEEEecCCCCCCCccC--HHHHHHHHHHcCCEEEE
Confidence 344444556555555554 23577788899998775
No 393
>PRK07454 short chain dehydrogenase; Provisional
Probab=33.56 E-value=2.5e+02 Score=25.68 Aligned_cols=74 Identities=20% Similarity=0.158 Sum_probs=41.0
Q ss_pred cCcEEEeccChHHHHHHH-HHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cch----HHHHHhh------
Q 045642 199 QNEVILTLGHSKFVKEFL-CAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TDS----AVFAMIS------ 266 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L-~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~Ds----av~~~m~------ 266 (406)
++.++|..|.++.+-..| +.+.++| .+|+++. |+......+.+.+.+.+-++.++ .|- .+..++.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G--~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG--WDLALVA-RSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEe-CCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 456788888777665544 4444444 4788875 43334445666666655555433 332 3333333
Q ss_pred -cCCEEEEcc
Q 045642 267 -RVNMVIVGV 275 (406)
Q Consensus 267 -~vd~VllGA 275 (406)
++|.++-.|
T Consensus 82 ~~id~lv~~a 91 (241)
T PRK07454 82 GCPDVLINNA 91 (241)
T ss_pred CCCCEEEECC
Confidence 467777655
No 394
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=33.53 E-value=90 Score=30.25 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=32.3
Q ss_pred EEEEecCCCC-------cchHHHHHHHHhCCCceEEEcch-HHHHH--hhcCCEEEEccee
Q 045642 227 EVFIADGAPK-------FEGHILAKELDKKGLKAIVITDS-AVFAM--ISRVNMVIVGVHA 277 (406)
Q Consensus 227 ~ViV~EsrP~-------~eG~~~a~~L~~~GI~vt~I~Ds-av~~~--m~~vd~VllGAda 277 (406)
+|-|+.+.|. ..|+.+.+.|.+.|++|.+|... ..... ..++|.|+...+.
T Consensus 6 ~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g 66 (304)
T PRK01372 6 KVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHG 66 (304)
T ss_pred EEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCC
Confidence 4555554443 24688899999999999888433 22222 2357888876543
No 395
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=33.52 E-value=4.3e+02 Score=26.64 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=50.4
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH-HHHH-HHHhCCCceEEEcch-HHHHHh-hcCCEEEEcce
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH-ILAK-ELDKKGLKAIVITDS-AVFAMI-SRVNMVIVGVH 276 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~-~~a~-~L~~~GI~vt~I~Ds-av~~~m-~~vd~VllGAd 276 (406)
..+++-|....+..++ .+.+.|. +|++. ++.+.|. .+.. .+...++.+++..|- .+...+ ++...|++.
T Consensus 71 ~~v~~~sG~aAi~~~l-~~l~~GD--~VI~~--~~~yg~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~TklV~le-- 143 (364)
T PRK07269 71 YALATSSGMSAIVLAF-SVFPVGS--KVVAV--RDLYGGSFRWFNQQEKEGRFHFTYANTEEELIAAIEEDTDIVYIE-- 143 (364)
T ss_pred eEEEeCCHHHHHHHHH-HHhCCCC--EEEEe--cCCcCchHHHHHHHHhcCcEEEEecCCHHHHHHhcCcCceEEEEE--
Confidence 4566666666666666 4543443 56654 4566553 3223 333346777776653 333334 333333332
Q ss_pred eEeeCCCcccccc----hHHHHHHHhhCCCceEE
Q 045642 277 AVMANGGVIAPAG----LHVLALAAKKHDVPFVV 306 (406)
Q Consensus 277 av~~nG~vvnk~G----T~~lAl~Ak~~~vPv~V 306 (406)
...|..| --.++-.|+.++++|+|
T Consensus 144 ------sP~NPtg~~~di~~I~~la~~~gi~vvv 171 (364)
T PRK07269 144 ------TPTNPLMVEFDIEKVAKLAHAKGAKVIV 171 (364)
T ss_pred ------CCCCCCCeeeCHHHHHHHHHHcCCEEEE
Confidence 2223333 44567778999999887
No 396
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=33.51 E-value=5.2e+02 Score=26.15 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=32.2
Q ss_pred CCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 250 GLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 250 GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
+..+..+.+. +..+|..+|.+|.-+ ||..+ =|-.+|+|++++ ||.+|
T Consensus 251 ~~~v~~~~~~-~~~~l~aADl~V~~S-------------Gt~tl--Ea~a~G~P~Vv~---yk~~p 297 (385)
T TIGR00215 251 DLQLHLIDGD-ARKAMFAADAALLAS-------------GTAAL--EAALIKTPMVVG---YRMKP 297 (385)
T ss_pred CCcEEEECch-HHHHHHhCCEEeecC-------------CHHHH--HHHHcCCCEEEE---EcCCH
Confidence 4566656553 456888899888765 66554 566789999997 45544
No 397
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=33.47 E-value=5.6e+02 Score=26.45 Aligned_cols=118 Identities=14% Similarity=0.213 Sum_probs=61.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcC-CceEEEEe-cCCCCcchHHHHHHHHhCCC
Q 045642 175 VNELIED-INTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKK-RSFEVFIA-DGAPKFEGHILAKELDKKGL 251 (406)
Q Consensus 175 i~~~~~e-~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~-~~f~ViV~-EsrP~~eG~~~a~~L~~~GI 251 (406)
+++++++ .....+.+.+ ..+.+ .|..+..++....+..+...+.+.| -..-+..+ -..|..++....+++.+.|+
T Consensus 269 ~e~~i~~e~~~~~~~l~~-~~~~l-~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (426)
T cd01972 269 AEAVIEREHERVAPEIEE-LRKAL-KGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDSEKDLLEHGV 346 (426)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHh-CCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEeccCchhhhcchhHHHHhcCCc
Confidence 4445543 3344444443 34445 5777777777777777777776666 43332222 23344444334455666666
Q ss_pred ce--E---EEcch----HHHHHhhc--CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 252 KA--I---VITDS----AVFAMISR--VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 252 ~v--t---~I~Ds----av~~~m~~--vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
+. . ++.|. .+..++++ .|.+|.+ ++- .. ...|++.|+|++-+.
T Consensus 347 ~~~~~~~~~~~~~~~~~e~~~~l~~~~pDl~i~~-------~~~------~~-~~~~~~~gip~~~~~ 400 (426)
T cd01972 347 DPEIDITKYTVSNGQYYQFYNLLKRVKPDFIIFR-------HGG------LF-PDATVYLGIPVVPLN 400 (426)
T ss_pred ccccccceeeecCCCHHHHHHHHHHhCCCEEEEc-------CCC------cc-HHHHHhcCCCEEecc
Confidence 32 2 44444 44555554 4544432 211 11 123477999998663
No 398
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=33.18 E-value=5.2e+02 Score=26.01 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=53.2
Q ss_pred HHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc---------hHHHHH
Q 045642 194 MELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD---------SAVFAM 264 (406)
Q Consensus 194 ~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D---------sav~~~ 264 (406)
++++.....|.|-|.+..+..+|.... -++.=+|++.. |.+.+. +..+...|+.+..+.. ..+...
T Consensus 43 a~~~g~~~~v~~~sgt~al~lal~al~-~~~Gd~Viv~~--~~~~~~--~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~ 117 (379)
T PRK11658 43 CQLTGNQHAIAVSSATAGMHITLMALG-IGPGDEVITPS--LTWVST--LNMIVLLGATPVMVDVDRDTLMVTPEAIEAA 117 (379)
T ss_pred HHHhCCCeEEEECCHHHHHHHHHHHcC-CCCCCEEEECC--CcHHHH--HHHHHHcCCEEEEEecCCCcCCcCHHHHHHh
Confidence 345544456776665555555554441 22334566654 444443 3344557888777642 122223
Q ss_pred hhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 265 ISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 265 m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
+..=+++|+-.+ ..|.. .--..++-+|+.+|+++++
T Consensus 118 i~~~tkav~~~~---~~G~~---~d~~~i~~~a~~~gi~vi~ 153 (379)
T PRK11658 118 ITPRTKAIIPVH---YAGAP---ADLDAIRAIGERYGIPVIE 153 (379)
T ss_pred cccCCeEEEEeC---CCCCc---CCHHHHHHHHHHcCCeEEE
Confidence 322234444222 23433 2234677889999999887
No 399
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=33.15 E-value=2.2e+02 Score=28.41 Aligned_cols=72 Identities=14% Similarity=0.350 Sum_probs=49.0
Q ss_pred CcEEEeccChH---HHHHHHHHHHHcCCceEEEEecCCCCcch-HHHHHHHHhCCCceEEEcchH-HHHHhhcCCEEEEc
Q 045642 200 NEVILTLGHSK---FVKEFLCAAKEKKRSFEVFIADGAPKFEG-HILAKELDKKGLKAIVITDSA-VFAMISRVNMVIVG 274 (406)
Q Consensus 200 g~~ILT~g~S~---tV~~~L~~A~~~~~~f~ViV~EsrP~~eG-~~~a~~L~~~GI~vt~I~Dsa-v~~~m~~vd~VllG 274 (406)
-++..|+|.|- +..+++..+.+...++.|++--+.|...- +..+++.. +..++-|+. |+-+|+++|+.|..
T Consensus 159 r~ilI~lGGsDpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~~~----~i~~~~~~~dma~LMke~d~aI~A 234 (318)
T COG3980 159 RDILITLGGSDPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEKYP----NINLYIDTNDMAELMKEADLAISA 234 (318)
T ss_pred heEEEEccCCChhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhhCC----CeeeEecchhHHHHHHhcchheec
Confidence 35677788764 56677777775556888888877887655 34444443 334455544 88999999998876
Q ss_pred c
Q 045642 275 V 275 (406)
Q Consensus 275 A 275 (406)
|
T Consensus 235 a 235 (318)
T COG3980 235 A 235 (318)
T ss_pred c
Confidence 5
No 400
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=32.82 E-value=1.9e+02 Score=28.51 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=57.0
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc-----hHHHHHhhcCCEEEEcc-
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD-----SAVFAMISRVNMVIVGV- 275 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D-----sav~~~m~~vd~VllGA- 275 (406)
.||..|.+..+=..|..+..+...++|+.+.-++. .....+...+++... .| ..+..+++++|.||=-|
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~----~~~~~~~~~~~~~~~-~Dl~~~~~~~~~~~~~~d~ViH~aa 77 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD----RLGDLVNHPRMHFFE-GDITINKEWIEYHVKKCDVILPLVA 77 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH----HHHHhccCCCeEEEe-CCCCCCHHHHHHHHcCCCEEEECcc
Confidence 57888887777666655542222467887753321 111112223444332 23 23445667788777322
Q ss_pred eeEe----eCCC---cccccchHHHHHHHhhCCCceEEecCC
Q 045642 276 HAVM----ANGG---VIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 276 dav~----~nG~---vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
-..- .+-. -+|-.||..+.-+|+..+++|+.++..
T Consensus 78 ~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~ 119 (347)
T PRK11908 78 IATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS 119 (347)
T ss_pred cCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 1110 1111 124679999999999999888876654
No 401
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=32.79 E-value=1.9e+02 Score=28.12 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=18.7
Q ss_pred cchHHHHHHHhhCCCceEEecC
Q 045642 288 AGLHVLALAAKKHDVPFVVVAS 309 (406)
Q Consensus 288 ~GT~~lAl~Ak~~~vPv~V~ae 309 (406)
+-+.+.|.+|+++++||.+++-
T Consensus 211 Me~~~ea~lA~~~gi~~~~i~~ 232 (272)
T PRK08202 211 MSTVPEVIVARHCGLKVLGISC 232 (272)
T ss_pred cChHHHHHHHHHCCCcEEEEEE
Confidence 3467899999999999999863
No 402
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=32.75 E-value=2.6e+02 Score=27.17 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=39.7
Q ss_pred CcEEEe----ccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch
Q 045642 200 NEVILT----LGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS 259 (406)
Q Consensus 200 g~~ILT----~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds 259 (406)
+.++|. .|.|++|.++|.....+| +++|=+...-...=..+...|+...-+..+.+|-
T Consensus 53 nnvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DD 114 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDD 114 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHHHHHHhcCCCCEEEEecC
Confidence 445554 567999999998888666 6666665443333346677777777777777774
No 403
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=32.70 E-value=62 Score=34.38 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=39.8
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH-HHHHHHHhCCCceEEEcchHHHHHhh--cCCEEEEcceeE
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH-ILAKELDKKGLKAIVITDSAVFAMIS--RVNMVIVGVHAV 278 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~-~~a~~L~~~GI~vt~I~Dsav~~~m~--~vd~VllGAdav 278 (406)
.||.+|...-...+...+.+..+..+||++.+.+ +-|. .++......-+..-+.....+..+.+ ++|.|+.|.+.-
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~-Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~id~Vi~g~E~~ 80 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVYALSSYL-NPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNPDLVVIGPEEP 80 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEEEEECCC-ChhheeecccccCceEecCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 5888887766555555565444568999996633 3342 22222211001111111123333333 489999988764
Q ss_pred e
Q 045642 279 M 279 (406)
Q Consensus 279 ~ 279 (406)
+
T Consensus 81 l 81 (486)
T PRK05784 81 L 81 (486)
T ss_pred H
Confidence 3
No 404
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=32.66 E-value=3.5e+02 Score=27.43 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=64.9
Q ss_pred HHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCC------C--------cch----HHHHHHHHhC-
Q 045642 189 IAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAP------K--------FEG----HILAKELDKK- 249 (406)
Q Consensus 189 I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP------~--------~eG----~~~a~~L~~~- 249 (406)
+...+.+.+. +..|+.+|....-..++......|.. ++.+++..- . .-| ..+++.|.+.
T Consensus 125 ~g~~~q~~l~-~~~VlvvG~GG~Gs~ia~~La~~Gvg-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 125 VGEEGQRRLL-EARVLLIGAGGLGSPAALYLAAAGVG-TLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred cCHHHHHHHh-cCcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 4444555664 45677778776656666666656643 344444320 0 012 3456677654
Q ss_pred -CCceEEEc----chHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 250 -GLKAIVIT----DSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 250 -GI~vt~I~----Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
+++++.+. ...+..+++++|.||-..|..-. -+.+.-+|+.+++|++...
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~---------r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPT---------RYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 35554443 23445677899999988886531 3457788999999998763
No 405
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.59 E-value=1e+02 Score=30.42 Aligned_cols=53 Identities=13% Similarity=0.244 Sum_probs=38.3
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
.|..|++.|+|.+|-+-|.... .++.-+|+++.++.. .+...++++|.||.++
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL-~~~gatVtv~~s~t~-----------------------~l~~~~~~ADIVIsAv 209 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLL-LQKNASVTILHSRSK-----------------------DMASYLKDADVIVSAV 209 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHH-HHCCCeEEEEeCCch-----------------------hHHHHHhhCCEEEECC
Confidence 5778888899988888777766 345678888877631 2345677888888765
No 406
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=32.44 E-value=1.7e+02 Score=26.60 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=37.7
Q ss_pred EEeccChHHHHHHHHHHHHc----CCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchH
Q 045642 203 ILTLGHSKFVKEFLCAAKEK----KRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSA 260 (406)
Q Consensus 203 ILT~g~S~tV~~~L~~A~~~----~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsa 260 (406)
++.+..+..|..|+....+. -++.+++++ |..+++.|.+.|+++.++++..
T Consensus 176 ~iiftS~~~v~~f~~~~~~~~~~~~~~~~~~ai-------g~~t~~~l~~~g~~~~~~~~~~ 230 (239)
T cd06578 176 AVLFTSPSTVRNLLELLGKEGRALLKNVKIAAI-------GPRTAEALRELGLKVVIVAESP 230 (239)
T ss_pred EEEEeCHHHHHHHHHHHhhhhhhhhcCCeEEEE-------CHHHHHHHHHcCCCceeeecCC
Confidence 45555677888888877532 244556655 8899999999999988887765
No 407
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=32.41 E-value=2.5e+02 Score=26.59 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=18.3
Q ss_pred cchHHHHHHHhhCCCceEEec
Q 045642 288 AGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 288 ~GT~~lAl~Ak~~~vPv~V~a 308 (406)
+=+..++.+|+++|+|+.+++
T Consensus 181 ME~aa~~~vA~~~gv~~~~i~ 201 (241)
T TIGR01694 181 MTGVPEAVLARELELCYATLA 201 (241)
T ss_pred ccHHHHHHHHHHCCCCEEEEE
Confidence 447889999999999999885
No 408
>PRK07806 short chain dehydrogenase; Provisional
Probab=32.37 E-value=1.5e+02 Score=27.26 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=57.3
Q ss_pred cCcEEEeccChHHHHHHHHHH-HHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc----hHHHHHhh------
Q 045642 199 QNEVILTLGHSKFVKEFLCAA-KEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD----SAVFAMIS------ 266 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A-~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D----sav~~~m~------ 266 (406)
.+.+||..|.++.+=..|... .++| .+|+++..++......++.+|...|.++..+ .| ..+..++.
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G--~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAG--AHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCC--CEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 356788888777665555443 3333 5677664333222345666777666554332 33 22333333
Q ss_pred -cCCEEEEcceeEee------CCCcccccchHHHHHHHhhC---CCceEEecC
Q 045642 267 -RVNMVIVGVHAVMA------NGGVIAPAGLHVLALAAKKH---DVPFVVVAS 309 (406)
Q Consensus 267 -~vd~VllGAdav~~------nG~vvnk~GT~~lAl~Ak~~---~vPv~V~ae 309 (406)
.+|.|+.-|-.... .---+|-.|+..++-++..+ +-.++.++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 47777765421100 00125778998888877754 224555543
No 409
>PRK05865 hypothetical protein; Provisional
Probab=32.29 E-value=1.3e+02 Score=34.47 Aligned_cols=99 Identities=18% Similarity=0.082 Sum_probs=56.1
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEE--Ecc-hHHHHHhhcCCEEEEcceeE
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIV--ITD-SAVFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~--I~D-sav~~~m~~vd~VllGAdav 278 (406)
.||+.|.++.+=..|..+.. .+..+|+++...+.. .+ ..++.... +.| ..+..++.++|.||--|-.
T Consensus 2 kILVTGATGfIGs~La~~Ll-~~G~~Vv~l~R~~~~-------~~-~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~- 71 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLL-SQGHEVVGIARHRPD-------SW-PSSADFIAADIRDATAVESAMTGADVVAHCAWV- 71 (854)
T ss_pred EEEEECCCCHHHHHHHHHHH-HCcCEEEEEECCchh-------hc-ccCceEEEeeCCCHHHHHHHHhCCCEEEECCCc-
Confidence 47778887776665554431 234567766543211 01 11332221 123 3556667788888876622
Q ss_pred eeCCCcccccchHHHHHHHhhCCCceEEecCC
Q 045642 279 MANGGVIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 279 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
.....-+|-.||..++-+|+.++++-+|...+
T Consensus 72 ~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS 103 (854)
T PRK05865 72 RGRNDHINIDGTANVLKAMAETGTGRIVFTSS 103 (854)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 22223457789999999999988765554443
No 410
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=32.26 E-value=2.5e+02 Score=26.84 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=50.0
Q ss_pred EEEEecCCCC-cchHHHHHHHHhCCCceEEEcchHHHH----HhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCC
Q 045642 227 EVFIADGAPK-FEGHILAKELDKKGLKAIVITDSAVFA----MISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHD 301 (406)
Q Consensus 227 ~ViV~EsrP~-~eG~~~a~~L~~~GI~vt~I~Dsav~~----~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~ 301 (406)
+|++.-.+.. .-+..++..|...|+++....|..... .|..=|.+|+-. -.|.. --+..++-.||.+|
T Consensus 130 ~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS----~sg~~---~~~~~~~~~ak~~g 202 (278)
T PRK11557 130 RIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAIS----YSGER---RELNLAADEALRVG 202 (278)
T ss_pred eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEc----CCCCC---HHHHHHHHHHHHcC
Confidence 5666654432 223677788888999999988864433 355566555431 12221 12456778999999
Q ss_pred CceEEecCC
Q 045642 302 VPFVVVAST 310 (406)
Q Consensus 302 vPv~V~aes 310 (406)
+|+++++..
T Consensus 203 a~iI~IT~~ 211 (278)
T PRK11557 203 AKVLAITGF 211 (278)
T ss_pred CCEEEEcCC
Confidence 999999875
No 411
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=32.20 E-value=5.9e+02 Score=26.35 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=53.8
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc---hHHHHHhhcCCEEEEcc
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD---SAVFAMISRVNMVIVGV 275 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D---sav~~~m~~vd~VllGA 275 (406)
.|.+++.++....+..+.+-..+-|-...++++.+.+..--..+.+.+...+.++.++.+ ..+...+++. .+
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l~~~-----~~ 373 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYAKEL-----KI 373 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhc-----CC
Confidence 577888888877665555555555655434444443332222333445555666666554 2334444443 34
Q ss_pred eeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 276 HAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 276 dav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
|-++.+ ..-..+|++.++|++.+.
T Consensus 374 dliiG~---------s~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 374 DVLIGN---------SYGRRIAEKLGIPLIRIG 397 (429)
T ss_pred CEEEEC---------chhHHHHHHcCCCEEEec
Confidence 444433 223477889999998764
No 412
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=32.19 E-value=5e+02 Score=25.51 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=48.5
Q ss_pred CcEEEeccChHHHHHHHHHHHH---c-CCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch--------HHHHHhhc
Q 045642 200 NEVILTLGHSKFVKEFLCAAKE---K-KRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS--------AVFAMISR 267 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~---~-~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds--------av~~~m~~ 267 (406)
...++|.|.+.....++..+.. . ++.-+|++.+ |.+-+ ..+.....|+++..++-. .+...+..
T Consensus 77 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~--~~h~~--~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~ 152 (373)
T TIGR03812 77 AYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPE--SAHFS--FEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDD 152 (373)
T ss_pred CCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECC--cchHH--HHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhh
Confidence 4457777755554444433321 1 2334666654 33322 333445678888877521 22222322
Q ss_pred CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 268 VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 268 vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
-++.++-...-...|.+ .. --.++-+||+++++++|=
T Consensus 153 ~~~~vv~~~~~~~tG~~-~~--~~~i~~l~~~~~~~livD 189 (373)
T TIGR03812 153 NTIGIVGIAGTTELGQI-DD--IEELSKIALENGIYLHVD 189 (373)
T ss_pred CcEEEEEECCCCCCCcc-CC--HHHHHHHHHHcCCeEEEE
Confidence 22211111111233333 22 235777889999988863
No 413
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=32.15 E-value=1.1e+02 Score=25.53 Aligned_cols=105 Identities=18% Similarity=0.239 Sum_probs=60.2
Q ss_pred EEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHh-CCCceEEEcchHHHHHhhcCCEEEEcceeEeeC
Q 045642 203 ILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDK-KGLKAIVITDSAVFAMISRVNMVIVGVHAVMAN 281 (406)
Q Consensus 203 ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~-~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~n 281 (406)
|...|.+..+=.-|.....+...+++..+-++....|..+...... .++.-..+.+ .-.....++|.|++....=
T Consensus 2 V~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dvvf~a~~~~--- 77 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED-ADPEELSDVDVVFLALPHG--- 77 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE-TSGHHHTTESEEEE-SCHH---
T ss_pred EEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee-cchhHhhcCCEEEecCchh---
Confidence 5566755555554544444577888766555555666655555442 2332222222 2223338899999874321
Q ss_pred CCcccccchHHHHHHHhhCCCceEEecCCccccccCC
Q 045642 282 GGVIAPAGLHVLALAAKKHDVPFVVVASTHELCSLYP 318 (406)
Q Consensus 282 G~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~~~ 318 (406)
-+..++-.+...|++|+=++..|.+.+..+
T Consensus 78 -------~~~~~~~~~~~~g~~ViD~s~~~R~~~~~~ 107 (121)
T PF01118_consen 78 -------ASKELAPKLLKAGIKVIDLSGDFRLDDDVP 107 (121)
T ss_dssp -------HHHHHHHHHHHTTSEEEESSSTTTTSTTSE
T ss_pred -------HHHHHHHHHhhCCcEEEeCCHHHhCCCCCC
Confidence 133444455668889998999888877444
No 414
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=32.08 E-value=1.7e+02 Score=29.73 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=57.5
Q ss_pred cCcEEEeccChHHHHH---HHHHHHHcCC-ceEEEEecCCCCcchHHHHHHHHhCC-CceEEEcchHHHHHhhcCCEEEE
Q 045642 199 QNEVILTLGHSKFVKE---FLCAAKEKKR-SFEVFIADGAPKFEGHILAKELDKKG-LKAIVITDSAVFAMISRVNMVIV 273 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~---~L~~A~~~~~-~f~ViV~EsrP~~eG~~~a~~L~~~G-I~vt~I~Dsav~~~m~~vd~Vll 273 (406)
+-.+||++|.|.-+.. ++..+..... ++.|+..-+.... ..+-..+.+.| +.+....|. +..+|+.+|.||
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~~--~~~~~~~~~~~~~~v~~f~~d-m~~~~~~ADLvI- 257 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLANRIQVIHQTGKNDL--EELKSAYNELGVVRVLPFIDD-MAALLAAADLVI- 257 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcchH--HHHHHHHhhcCcEEEeeHHhh-HHHHHHhccEEE-
Confidence 4568999998875444 4444443333 4666665443332 24455566666 555555565 666677777664
Q ss_pred cceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 274 GVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 274 GAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
.|.|...++-++ ..++|.+.+-
T Consensus 258 ------------sRaGa~Ti~E~~-a~g~P~IliP 279 (357)
T COG0707 258 ------------SRAGALTIAELL-ALGVPAILVP 279 (357)
T ss_pred ------------eCCcccHHHHHH-HhCCCEEEeC
Confidence 577877777654 4699999863
No 415
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=31.94 E-value=68 Score=31.32 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=43.8
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS 259 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds 259 (406)
+..|++|.+.|.+..-..+=..|+..|.+++|++.++.|. .....+...|-+++++...
T Consensus 54 ~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~----~k~~~~~~~GA~v~~~~~~ 112 (298)
T TIGR01139 54 LKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSI----ERRKLLKAYGAELVLTPGA 112 (298)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCH----HHHHHHHHcCCEEEEECCC
Confidence 4567788887777776666666776888999999988763 2366678899999988653
No 416
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.77 E-value=2.9e+02 Score=22.58 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCceEEEcchHHHHH----hhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCC
Q 045642 240 HILAKELDKKGLKAIVITDSAVFAM----ISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Dsav~~~----m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
..++..|...|.++..+.+...... +..-|.+|+-.. .|.- .-...++-.|+.+++++++++..
T Consensus 29 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~----~g~~---~~~~~~~~~a~~~g~~iv~iT~~ 96 (139)
T cd05013 29 EYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISF----SGET---KETVEAAEIAKERGAKVIAITDS 96 (139)
T ss_pred HHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeC----CCCC---HHHHHHHHHHHHcCCeEEEEcCC
Confidence 3445566666777777766554332 233455554321 2332 22455677899999999999875
No 417
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=31.75 E-value=1.3e+02 Score=29.21 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=49.9
Q ss_pred hHHHHHHHHhCCCc---eEEEcch------HHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecC
Q 045642 239 GHILAKELDKKGLK---AIVITDS------AVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVAS 309 (406)
Q Consensus 239 G~~~a~~L~~~GI~---vt~I~Ds------av~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ae 309 (406)
+.-+|++|.+.|++ ++++.|. ++....+++|.||+ +||+=-.-==...=.+||.+|+|...-.+
T Consensus 23 a~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~-------tGGLGPT~DDiT~e~vAka~g~~lv~~~~ 95 (255)
T COG1058 23 AAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVIT-------TGGLGPTHDDLTAEAVAKALGRPLVLDEE 95 (255)
T ss_pred HHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEE-------CCCcCCCccHhHHHHHHHHhCCCcccCHH
Confidence 46789999999997 4577785 45556667877776 46665444445555789999999988766
Q ss_pred Cccccc
Q 045642 310 THELCS 315 (406)
Q Consensus 310 s~K~~~ 315 (406)
.++.-.
T Consensus 96 al~~i~ 101 (255)
T COG1058 96 ALAMIE 101 (255)
T ss_pred HHHHHH
Confidence 665544
No 418
>PRK12937 short chain dehydrogenase; Provisional
Probab=31.63 E-value=2.7e+02 Score=25.32 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=53.9
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cch----HHHHHh-------h
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TDS----AVFAMI-------S 266 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~Ds----av~~~m-------~ 266 (406)
.+.+||..|.++.+=..|..... .+..+|+++-.+.......+.+++...|-.+.++ .|- .+-.++ .
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLA-ADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 35678888887777666655442 2334666654433333456677777766555544 331 222222 3
Q ss_pred cCCEEEEcceeEeeCCC-------------cccccchHHHHHHHhh
Q 045642 267 RVNMVIVGVHAVMANGG-------------VIAPAGLHVLALAAKK 299 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~-------------vvnk~GT~~lAl~Ak~ 299 (406)
++|.||..|-.. ..+. -+|-.|++.++.++..
T Consensus 83 ~id~vi~~ag~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 127 (245)
T PRK12937 83 RIDVLVNNAGVM-PLGTIADFDLEDFDRTIATNLRGAFVVLREAAR 127 (245)
T ss_pred CCCEEEECCCCC-CCCChhhCCHHHHHHHHhhhchHHHHHHHHHHH
Confidence 578887766432 1111 1556777776655543
No 419
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=31.63 E-value=3.3e+02 Score=26.04 Aligned_cols=113 Identities=20% Similarity=0.258 Sum_probs=67.0
Q ss_pred HHHHhcccC-cEEEeccChHHHHHHHHHHHHcCCceEEEEec---CCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhc
Q 045642 192 QAMELIHQN-EVILTLGHSKFVKEFLCAAKEKKRSFEVFIAD---GAPKFEGHILAKELDKKGLKAIVITDSAVFAMISR 267 (406)
Q Consensus 192 ~a~~~I~~g-~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~E---srP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~ 267 (406)
.+.+.+... +.|.+.+.| +++++.|. ..+++.++... ..|.+-.+.+|+..++.|+.+.+..- .++..
T Consensus 68 ~~~~kfr~~~dlI~V~~~~---lkv~R~Av-~~~rVDil~~p~~~r~~~gldh~~a~laa~~~valeisl~----~ll~~ 139 (229)
T COG1603 68 RLVKKFRSKVDLIAVEPGS---LKVNRAAV-ENKRVDILSHPETGRKDPGLDHVLARLAAEKGVALEISLR----PLLRS 139 (229)
T ss_pred HHHHhhhcceeEEEEccCc---HHHHHHHH-hccCccEEEcccccCCCccccHHHHHHHHhcCceEEEehH----Hhhcc
Confidence 334444444 778887766 66777887 45567777764 33445568889988888876655422 12111
Q ss_pred CCEEEEcceeEeeCCCcc-cccc-hHHHHHHHhhCCCceEEecCCccccccCCCCccccccccCCccccccc
Q 045642 268 VNMVIVGVHAVMANGGVI-APAG-LHVLALAAKKHDVPFVVVASTHELCSLYPHNLEVLLNEMRCPSELLNF 337 (406)
Q Consensus 268 vd~VllGAdav~~nG~vv-nk~G-T~~lAl~Ak~~~vPv~V~aes~K~~~~~~~d~~~i~~e~~~p~ev~~~ 337 (406)
.|.-- +-.+ -..+-.+++.|++|+++.++. .. +.|+++|-++.++
T Consensus 140 -------------~g~~Ra~~l~~lr~~lrl~rk~~v~ivvtS~A-----------~s-~~elrsP~dv~sl 186 (229)
T COG1603 140 -------------SGYRRARLLSFLRSLLRLARKYDVPIVVTSDA-----------ES-PLELRSPRDVISL 186 (229)
T ss_pred -------------chhHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-----------CC-hhhhcChhhHHHH
Confidence 11111 1111 123446889999999998654 22 5566777666543
No 420
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=31.62 E-value=1.6e+02 Score=25.71 Aligned_cols=99 Identities=23% Similarity=0.189 Sum_probs=58.7
Q ss_pred EEeccChHHHHH-HHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE--cc-hHHHHHhhcCCEEEEcceeE
Q 045642 203 ILTLGHSKFVKE-FLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI--TD-SAVFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 203 ILT~g~S~tV~~-~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I--~D-sav~~~m~~vd~VllGAdav 278 (406)
|+.+|.++.+=. +++.+.+++ ++|+++--+|...- . ..++.+... .| .++...++.+|.|+.-+-.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~R~~~~~~----~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~- 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--HEVTALVRSPSKAE----D---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP- 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGHH----H---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS-
T ss_pred eEEECCCChHHHHHHHHHHHCC--CEEEEEecCchhcc----c---ccccccceeeehhhhhhhhhhhhcchhhhhhhh-
Confidence 566776555554 445555444 77777665544211 1 455554433 22 3567777888888876511
Q ss_pred eeCCCcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 279 MANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 279 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
... ..-++..+.-+++..+++-+|+..+.....
T Consensus 71 --~~~--~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~ 103 (183)
T PF13460_consen 71 --PPK--DVDAAKNIIEAAKKAGVKRVVYLSSAGVYR 103 (183)
T ss_dssp --TTT--HHHHHHHHHHHHHHTTSSEEEEEEETTGTT
T ss_pred --hcc--cccccccccccccccccccceeeeccccCC
Confidence 111 255566777788889998888866655543
No 421
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=31.60 E-value=1.3e+02 Score=30.13 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=23.4
Q ss_pred cceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCc
Q 045642 274 GVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTH 311 (406)
Q Consensus 274 GAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~ 311 (406)
++|.|..|. .+...+++|+.+|+|++.+++.+
T Consensus 92 ~pDlVi~d~------~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 92 RPDLIVYDI------ASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred CCCEEEECC------ccHHHHHHHHHhCCCEEEEehhh
Confidence 567777664 23445778999999999887654
No 422
>PRK07589 ornithine cyclodeaminase; Validated
Probab=31.56 E-value=2.9e+02 Score=27.98 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=60.0
Q ss_pred HHHHHHhcc--cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhc
Q 045642 190 AEQAMELIH--QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISR 267 (406)
Q Consensus 190 ~~~a~~~I~--~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~ 267 (406)
+.-+.+++. +-.++..+|.......-++.+..-..--+|+|. +|-...-..+++++.+.|+++....| +.....+
T Consensus 117 sala~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~--~~~av~~ 193 (346)
T PRK07589 117 SALAAKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRS--VAEAVEG 193 (346)
T ss_pred HHHHHHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCC--HHHHHhc
Confidence 344556663 345788888877666655554432223345555 33222235788888888898887654 4556688
Q ss_pred CCEEEEcc---e--eE-----eeCCCcccccchHH
Q 045642 268 VNMVIVGV---H--AV-----MANGGVIAPAGLHV 292 (406)
Q Consensus 268 vd~VllGA---d--av-----~~nG~vvnk~GT~~ 292 (406)
+|.|+.-. + -| +..|..++-+|++.
T Consensus 194 ADIIvtaT~S~~~~Pvl~~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 194 ADIITTVTADKTNATILTDDMVEPGMHINAVGGDC 228 (346)
T ss_pred CCEEEEecCCCCCCceecHHHcCCCcEEEecCCCC
Confidence 99998855 2 22 34566666666543
No 423
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=31.54 E-value=2.2e+02 Score=26.04 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCc--ccccchHHHHHHHhhCCCceEEecCCcccccc
Q 045642 240 HILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGV--IAPAGLHVLALAAKKHDVPFVVVASTHELCSL 316 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~v--vnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~~ 316 (406)
..+++.|++.|+++.++.+. .-+.++|.||++--....+ .. ....|....-..+...++|++.+|--+-+.-.
T Consensus 13 ~~i~~~l~~~G~~v~~~~~~---~~l~~~d~iiipG~~~~~~-~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~ 87 (205)
T PRK13141 13 RSVEKALERLGAEAVITSDP---EEILAADGVILPGVGAFPD-AMANLRERGLDEVIKEAVASGKPLLGICLGMQLLFE 87 (205)
T ss_pred HHHHHHHHHCCCeEEEECCH---HHhccCCEEEECCCCchHH-HHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhh
Confidence 67889999999999998664 2346788887753100000 00 01124333333444578999999977766543
No 424
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=31.53 E-value=1.7e+02 Score=28.36 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=27.6
Q ss_pred chHHHHHHHHhCCCceEEEcchH-HHHH---hhcCCEEEEcceeEe
Q 045642 238 EGHILAKELDKKGLKAIVITDSA-VFAM---ISRVNMVIVGVHAVM 279 (406)
Q Consensus 238 eG~~~a~~L~~~GI~vt~I~Dsa-v~~~---m~~vd~VllGAdav~ 279 (406)
.|+.+++.|.+.|+++.++.... .... +.+.|.|+.-++..+
T Consensus 20 s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ 65 (299)
T PRK14571 20 SGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTF 65 (299)
T ss_pred HHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCC
Confidence 46777888888888887774332 1111 246899998887654
No 425
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=31.51 E-value=89 Score=28.47 Aligned_cols=101 Identities=15% Similarity=0.197 Sum_probs=44.9
Q ss_pred EEeccChHHH---HHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch------HHHHHhhcCCEEEE
Q 045642 203 ILTLGHSKFV---KEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS------AVFAMISRVNMVIV 273 (406)
Q Consensus 203 ILT~g~S~tV---~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds------av~~~m~~vd~Vll 273 (406)
++-.+.|..+ ..+++.+.+.|...+|+++++.-.+=.....+.|....+-+.+..+. .+.. -+.+|.+++
T Consensus 4 ~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~~~l~~l~~~~v~~~~~~~~~~~~~~hi~l-~~~aD~~vV 82 (177)
T TIGR02113 4 LLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFITPLTLQVLSKNPVHLDVMDEHDPKVINHIEL-AKKADLFLV 82 (177)
T ss_pred EEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhccHhhHHHHhCCCeEeeccccccCCCccccee-chhhCEEEE
Confidence 3334444443 23455555556666777766654333323344444333322333211 1111 235777766
Q ss_pred cceeE-----eeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 274 GVHAV-----MANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 274 GAdav-----~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
---+. +++|-.=|-+.+ +|++. ..++|++++
T Consensus 83 aPaSanTlakiA~GiaDnLlt~--~a~a~-~~~~pv~i~ 118 (177)
T TIGR02113 83 APASANTIAHLAHGFADNIVTS--VALAL-PPETPKLIA 118 (177)
T ss_pred EeCCHHHHHHHHcCcCCcHHHH--HHHHc-CCCCCEEEE
Confidence 43332 333322222221 22222 348999975
No 426
>PLN00175 aminotransferase family protein; Provisional
Probab=31.43 E-value=5.8e+02 Score=26.02 Aligned_cols=92 Identities=22% Similarity=0.267 Sum_probs=49.9
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc---------hHHHHHh-hcCCE
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD---------SAVFAMI-SRVNM 270 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D---------sav~~~m-~~vd~ 270 (406)
.+++|.|.+..+..++...... .-+|++.+ |.+.+.. ..+...|..+..++- ..+-..+ +++..
T Consensus 117 ~I~vt~G~~~al~~~~~~l~~~--gd~Vlv~~--P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~ 190 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGLINP--GDEVILFA--PFYDSYE--ATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRA 190 (413)
T ss_pred CEEEeCCHHHHHHHHHHHhCCC--CCEEEEeC--CCchhHH--HHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceE
Confidence 4677777776665555544433 34566664 7766543 234456887776642 1122222 23333
Q ss_pred EEEcceeEeeCCCcccccchH-------HHHHHHhhCCCceEE
Q 045642 271 VIVGVHAVMANGGVIAPAGLH-------VLALAAKKHDVPFVV 306 (406)
Q Consensus 271 VllGAdav~~nG~vvnk~GT~-------~lAl~Ak~~~vPv~V 306 (406)
|++ + ..-|.+|+. .++-.|+.|++.+++
T Consensus 191 i~i-------~-~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~ 225 (413)
T PLN00175 191 ILI-------N-TPHNPTGKMFTREELELIASLCKENDVLAFT 225 (413)
T ss_pred EEe-------c-CCCCCCCcCCCHHHHHHHHHHHHHcCcEEEE
Confidence 332 2 234667764 467778888876553
No 427
>PRK07904 short chain dehydrogenase; Provisional
Probab=31.43 E-value=3.2e+02 Score=25.55 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=47.0
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCC-ceEEE-cc----hH----HHHHh-
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGL-KAIVI-TD----SA----VFAMI- 265 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI-~vt~I-~D----sa----v~~~m- 265 (406)
+.++.+||+.|.|+-+=..+.....+.-..+|+++..++...-..+++++...|- +++++ .| .. +..+.
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 4567789998988887777765532222478888865554333456677766552 45443 33 22 22222
Q ss_pred -hcCCEEEEcc
Q 045642 266 -SRVNMVIVGV 275 (406)
Q Consensus 266 -~~vd~VllGA 275 (406)
.++|.++.++
T Consensus 85 ~g~id~li~~a 95 (253)
T PRK07904 85 GGDVDVAIVAF 95 (253)
T ss_pred cCCCCEEEEee
Confidence 2688888765
No 428
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=31.33 E-value=1.3e+02 Score=24.88 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=35.7
Q ss_pred hcccCcEEEeccCh---HHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchH
Q 045642 196 LIHQNEVILTLGHS---KFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSA 260 (406)
Q Consensus 196 ~I~~g~~ILT~g~S---~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsa 260 (406)
.+..+|+++.+|+| .-+.+.++.|+++|. +++.+-+. + .+++.-.+.|+.+..+++..
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~--~iI~IT~~----~-~l~~~~~~~~~~~~~~p~~~ 100 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSAVEQAKERGA--KIVAITSG----G-KLLEMAREHGVPVIIIPKGL 100 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC--EEEEEeCC----c-hHHHHHHHcCCcEEECCCCC
Confidence 46678888887655 457777777776554 44433221 1 25555555788888877753
No 429
>PRK08618 ornithine cyclodeaminase; Validated
Probab=31.27 E-value=3.6e+02 Score=26.75 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=49.3
Q ss_pred HHHHHhcc--cCcEEEeccChHHHHHHHHHHHHcCCce-EEEEecCCCCcchHHHHHHHHh-CCCceEEEcchHHHHHhh
Q 045642 191 EQAMELIH--QNEVILTLGHSKFVKEFLCAAKEKKRSF-EVFIADGAPKFEGHILAKELDK-KGLKAIVITDSAVFAMIS 266 (406)
Q Consensus 191 ~~a~~~I~--~g~~ILT~g~S~tV~~~L~~A~~~~~~f-~ViV~EsrP~~eG~~~a~~L~~-~GI~vt~I~Dsav~~~m~ 266 (406)
.-+.+++. +..+|+.+|........+...... +.+ +|.|. +|-......+++++.+ .|+++....|. ..+++
T Consensus 116 ala~~~la~~~~~~v~iiGaG~~a~~~~~al~~~-~~~~~v~v~-~r~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~ 191 (325)
T PRK08618 116 GVATKYLAREDAKTLCLIGTGGQAKGQLEAVLAV-RDIERVRVY-SRTFEKAYAFAQEIQSKFNTEIYVVNSA--DEAIE 191 (325)
T ss_pred HHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHhc-CCccEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCCH--HHHHh
Confidence 33445553 456889999887777666554422 333 34455 4433345677777764 47877766553 33457
Q ss_pred cCCEEEEcc
Q 045642 267 RVNMVIVGV 275 (406)
Q Consensus 267 ~vd~VllGA 275 (406)
++|.|+...
T Consensus 192 ~aDiVi~aT 200 (325)
T PRK08618 192 EADIIVTVT 200 (325)
T ss_pred cCCEEEEcc
Confidence 899888754
No 430
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=31.15 E-value=87 Score=25.94 Aligned_cols=43 Identities=19% Similarity=0.113 Sum_probs=30.8
Q ss_pred CCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 233 GAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 233 srP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
++-..+-...++.+++.|++|..|++..-..+-+.+|.+|...
T Consensus 57 sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~ 99 (128)
T cd05014 57 SGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLP 99 (128)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECC
Confidence 3333444577777888888888888877777777788877654
No 431
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=31.12 E-value=3.6e+02 Score=26.31 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCC-ceEEEEecCCCCcchHHHHHHHHhCCC---ceEEE---cchHHHHHhhcCCEEEEcceeEeeCCCc
Q 045642 212 VKEFLCAAKEKKR-SFEVFIADGAPKFEGHILAKELDKKGL---KAIVI---TDSAVFAMISRVNMVIVGVHAVMANGGV 284 (406)
Q Consensus 212 V~~~L~~A~~~~~-~f~ViV~EsrP~~eG~~~a~~L~~~GI---~vt~I---~Dsav~~~m~~vd~VllGAdav~~nG~v 284 (406)
+..++..+.+-.. ++.+++.-..+..+ .+.+.+.+.+. .++++ ...-+..+|..+|.++.-+ |
T Consensus 217 ~~~l~~al~~l~~~~~~vi~~~~~~~~~--~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~S------g-- 286 (363)
T cd03786 217 LEEILEALAELAEEDVPVVFPNHPRTRP--RIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDS------G-- 286 (363)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCChHH--HHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcC------c--
Confidence 3344444432222 46666654333322 22233333332 34444 2345777888888888653 2
Q ss_pred ccccchHHHHHHHhhCCCceEEecC
Q 045642 285 IAPAGLHVLALAAKKHDVPFVVVAS 309 (406)
Q Consensus 285 vnk~GT~~lAl~Ak~~~vPv~V~ae 309 (406)
| +..-|-..|+|++++-.
T Consensus 287 ----g---i~~Ea~~~g~PvI~~~~ 304 (363)
T cd03786 287 ----G---IQEEASFLGVPVLNLRD 304 (363)
T ss_pred ----c---HHhhhhhcCCCEEeeCC
Confidence 2 34667778999999753
No 432
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=31.05 E-value=2.4e+02 Score=26.83 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=70.4
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceE--EEEe--cCCCCcc------hHHHHHHHHhCCCceEEEcc------------
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFE--VFIA--DGAPKFE------GHILAKELDKKGLKAIVITD------------ 258 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~--ViV~--EsrP~~e------G~~~a~~L~~~GI~vt~I~D------------ 258 (406)
..||+||..+.+...++... -..+|. ..++ ++-+..+ -..+...|.+.|++..-++-
T Consensus 30 ~~VlVHGgg~~i~~~~~~~g-i~~~~~~g~RvT~~~~l~~v~~al~~vn~~iv~~l~~~g~~a~~l~~~~~~a~~~~~~d 108 (248)
T cd04252 30 YPIVVHGAGPQLNEELEAAG-VEPEYVDGLRVTDPETLAVARKVFLEENLKLVEALERNGARARPITSGVFEAEYLDKDK 108 (248)
T ss_pred cEEEEeCCCHHHHHHHHHcC-CCcEeeCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCceEEEEECcCcc
Confidence 57999999999998888764 222221 1111 1111111 23466777788876544332
Q ss_pred ------------hHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCC-ceEEecC
Q 045642 259 ------------SAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDV-PFVVVAS 309 (406)
Q Consensus 259 ------------sav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~v-Pv~V~ae 309 (406)
..+..++..-...++..+++..+|.++|-.|=...+.+|+..+. .++.+++
T Consensus 109 ~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltd 172 (248)
T cd04252 109 YGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNE 172 (248)
T ss_pred CCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEEC
Confidence 23344555556788888998899999999999999999999885 4666654
No 433
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=31.02 E-value=2.2e+02 Score=24.65 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=26.0
Q ss_pred EEEeccChHHHHHHHHHHHHc----CCceEEEEecCCCCcchHHHHHHHHh
Q 045642 202 VILTLGHSKFVKEFLCAAKEK----KRSFEVFIADGAPKFEGHILAKELDK 248 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~----~~~f~ViV~EsrP~~eG~~~a~~L~~ 248 (406)
+|.||..+..+..+|....+. ...++|+|++.....+....++.+.+
T Consensus 2 iIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~ 52 (181)
T cd04187 2 VVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAA 52 (181)
T ss_pred EEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHh
Confidence 355666666665555443321 34567777766665555555555544
No 434
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=30.79 E-value=5.3e+02 Score=25.42 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=48.9
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch----------HHHHHhh---
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS----------AVFAMIS--- 266 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds----------av~~~m~--- 266 (406)
..+++|.|.+..+..++....+.| -+|++. +|..-+.. ..+...|+++..++-. .+...+.
T Consensus 60 ~~i~~~~g~t~al~~~l~~~~~~g--d~Vl~~--~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 133 (361)
T cd06452 60 DEARVTPGAREGKFAVMHSLCEKG--DWVVVD--GLAHYTSY--VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVK 133 (361)
T ss_pred ceEEEeCCHHHHHHHHHHHhcCCC--CEEEEc--CCcchHHH--HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHh
Confidence 456777666656555555544333 345553 33333322 2356678888776411 1222232
Q ss_pred -----cCCEEEEcceeEeeCCCcccccch----HHHHHHHhhCCCceEEe
Q 045642 267 -----RVNMVIVGVHAVMANGGVIAPAGL----HVLALAAKKHDVPFVVV 307 (406)
Q Consensus 267 -----~vd~VllGAdav~~nG~vvnk~GT----~~lAl~Ak~~~vPv~V~ 307 (406)
++..|++. +. -|..|+ ..++-+|+.++++|++=
T Consensus 134 ~~~~~~~~lv~l~-~p-------~n~tG~~~~~~~i~~~~~~~~~~vivD 175 (361)
T cd06452 134 DEFGKPPALALLT-HV-------DGNYGNLHDAKKIAKVCHEYGVPLLLN 175 (361)
T ss_pred hccCCCceEEEEE-CC-------CCCCeeeccHHHHHHHHHHcCCeEEEE
Confidence 44556553 11 123333 35666788899988763
No 435
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=30.65 E-value=3.2e+02 Score=24.99 Aligned_cols=73 Identities=26% Similarity=0.265 Sum_probs=39.9
Q ss_pred CcEEEeccChHHHHHHHHH-HHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc----hHHHHHhh-------
Q 045642 200 NEVILTLGHSKFVKEFLCA-AKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD----SAVFAMIS------- 266 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~-A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D----sav~~~m~------- 266 (406)
+.+||..|.|+.+=.-|.. ..++ ..+|+++..+|. .....+.++.+.|..+.++ .| ..+..++.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~--g~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKE--GAKVVIADLNDE-AAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHH-HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4577777776655554433 3333 457888766543 2235566676666665433 33 23333333
Q ss_pred cCCEEEEcc
Q 045642 267 RVNMVIVGV 275 (406)
Q Consensus 267 ~vd~VllGA 275 (406)
.+|.||..|
T Consensus 81 ~~d~vi~~a 89 (258)
T PRK12429 81 GVDILVNNA 89 (258)
T ss_pred CCCEEEECC
Confidence 467766655
No 436
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=30.55 E-value=5.1e+02 Score=25.73 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcccCcEEEe--ccChHHHHHHHHHHH
Q 045642 171 LIKAVNELIEDINTCREGIAEQAME-LIHQNEVILT--LGHSKFVKEFLCAAK 220 (406)
Q Consensus 171 l~~~i~~~~~e~~~~~~~I~~~a~~-~I~~g~~ILT--~g~S~tV~~~L~~A~ 220 (406)
+.+.+.++-+.++.+.+...+...+ .+...+.|.. .|.|..+-..+....
T Consensus 4 m~~~~~~~~~q~~~a~~~~~~~~~~~~~~~~~~I~i~G~GgS~~~a~~~~~~l 56 (337)
T PRK08674 4 MLEEYLNWPEQFEEALEIAISLDLEEDLEKIDNIVISGMGGSGIGGDLLRILL 56 (337)
T ss_pred HHHHHHhHHHHHHHHHHhhhccchhhhhcCCCEEEEEECcHHHHHHHHHHHHH
Confidence 4455555555555554333332222 3334455555 556666666666553
No 437
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=30.53 E-value=2.2e+02 Score=24.32 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=43.2
Q ss_pred EEEecCCCC-----cchHHHHHHHHhCCCce--EEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhC
Q 045642 228 VFIADGAPK-----FEGHILAKELDKKGLKA--IVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKH 300 (406)
Q Consensus 228 ViV~EsrP~-----~eG~~~a~~L~~~GI~v--t~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~ 300 (406)
.|+.-+.|+ .+|..+|+.+.+.|.++ ...-+.+|....+.. .+.+. .+-=+.....++..|
T Consensus 4 ~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q----------~p~~~--~~n~~~~~~~L~~~~ 71 (128)
T PRK00207 4 AIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGVLNANALT----------VPASD--EFDLVRAWQQLAAEH 71 (128)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHHHHHhcCC----------CCchh--hhhHHHHHHHHHHhc
Confidence 456667777 45678898888888763 233444554444321 11111 111234555777889
Q ss_pred CCceEEecCCcc
Q 045642 301 DVPFVVVASTHE 312 (406)
Q Consensus 301 ~vPv~V~aes~K 312 (406)
++|+|||...-+
T Consensus 72 ~v~l~vC~~~a~ 83 (128)
T PRK00207 72 GVALNVCVAAAL 83 (128)
T ss_pred CCEEEEeHHHHH
Confidence 999999976644
No 438
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=30.44 E-value=5.6e+02 Score=25.51 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=56.7
Q ss_pred HHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCc-----eEEEEecCCCCcchHH-HHHHHHhC----------CC
Q 045642 188 GIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRS-----FEVFIADGAPKFEGHI-LAKELDKK----------GL 251 (406)
Q Consensus 188 ~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~-----f~ViV~EsrP~~eG~~-~a~~L~~~----------GI 251 (406)
.+++..+++..-..+++|.|.+..+...++.|...+.+ .+|++.+ |.+.|.. .+..+... .-
T Consensus 85 ~la~~l~~~~~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~--~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 162 (396)
T PRK02627 85 ELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAE--NSFHGRTLATLSATGQPKYQEGFEPLVE 162 (396)
T ss_pred HHHHHHHhhcCCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEEC--CCcCcccHHHHHhcCCccccccCCCCCC
Confidence 34444444433346788889999999888877643332 5666665 3344532 22222100 01
Q ss_pred ceEEEc--c-hHHHHHh-hcCCEEEEcceeEeeCCCc-c-cccchHHHHHHHhhCCCceEE
Q 045642 252 KAIVIT--D-SAVFAMI-SRVNMVIVGVHAVMANGGV-I-APAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 252 ~vt~I~--D-sav~~~m-~~vd~VllGAdav~~nG~v-v-nk~GT~~lAl~Ak~~~vPv~V 306 (406)
.+..++ | .++...+ +++..|++-. +..+||+ . ++-=-..+.-+|++|++++++
T Consensus 163 ~~~~~~~~d~~~l~~~i~~~~~~vii~p--~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~ 221 (396)
T PRK02627 163 GFIYVPFNDIEALKAAITDKTAAVMLEP--IQGEGGVNPADKEYLQALRELCDENGILLIL 221 (396)
T ss_pred CceEeCCCCHHHHHHhcCCCeEEEEEec--ccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 122232 3 2233333 2344555532 3444442 2 222123455678899988764
No 439
>PRK05942 aspartate aminotransferase; Provisional
Probab=30.41 E-value=4.8e+02 Score=26.18 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=49.9
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc-chH------HHHHhhcCCEEEE
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT-DSA------VFAMISRVNMVIV 273 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~-Dsa------v~~~m~~vd~Vll 273 (406)
.+++|.|.+..+..++....+.| -+|+|. .|.+.+...+ +...|+++..++ |.. +..+.+.++.
T Consensus 99 ~i~vt~G~~~al~~~~~~~~~~g--d~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~--- 169 (394)
T PRK05942 99 EALPLLGSKEGLTHLALAYVNPG--DVVLVP--SPAYPAHFRG--PLIAGAQIYPIILKPENDWLIDLSSIPEEVAQ--- 169 (394)
T ss_pred eEEEccChHHHHHHHHHHhCCCC--CEEEEc--CCCCcchHHH--HHHcCCEEEEeecCCccCCccCHHHHHHhccc---
Confidence 36667777776666665554334 344444 5777764322 234688776663 211 1112121110
Q ss_pred cceeEeeCCCcccccchH-------HHHHHHhhCCCceEE
Q 045642 274 GVHAVMANGGVIAPAGLH-------VLALAAKKHDVPFVV 306 (406)
Q Consensus 274 GAdav~~nG~vvnk~GT~-------~lAl~Ak~~~vPv~V 306 (406)
.+..|+-+ ..-|.+|+. .++-.|+++++.+++
T Consensus 170 ~~k~i~l~-~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~ 208 (394)
T PRK05942 170 QAKILYFN-YPSNPTTATAPREFFEEIVAFARKYEIMLVH 208 (394)
T ss_pred cceEEEEc-CCCCCCCCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 22333333 335566654 466678889886654
No 440
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=30.41 E-value=2.4e+02 Score=26.04 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=54.6
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeE
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav 278 (406)
.|..||..|.+....+.++...+.|. +|.|+. |.... . ...+...| .+++....--...+..+|.||...+.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga--~V~VIs--~~~~~-~-l~~l~~~~-~i~~~~~~~~~~~l~~adlViaaT~d- 80 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA--HIVVIS--PELTE-N-LVKLVEEG-KIRWKQKEFEPSDIVDAFLVIAATND- 80 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEc--CCCCH-H-HHHHHhCC-CEEEEecCCChhhcCCceEEEEcCCC-
Confidence 56789999999888888877776664 455553 33211 1 22344333 34555443334456677777765432
Q ss_pred eeCCCcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 279 MANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 279 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
.-+| ..++..|+. +++|.+ +...+.|.
T Consensus 81 ----~elN----~~i~~~a~~-~~lvn~-~d~~~~~~ 107 (202)
T PRK06718 81 ----PRVN----EQVKEDLPE-NALFNV-ITDAESGN 107 (202)
T ss_pred ----HHHH----HHHHHHHHh-CCcEEE-CCCCccCe
Confidence 2222 344556644 677765 44434443
No 441
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=30.35 E-value=69 Score=26.57 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=41.9
Q ss_pred CceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc---------hHHHHHh--hcCCEEEE----cceeEeeCCCccccc
Q 045642 224 RSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD---------SAVFAMI--SRVNMVIV----GVHAVMANGGVIAPA 288 (406)
Q Consensus 224 ~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D---------sav~~~m--~~vd~Vll----GAdav~~nG~vvnk~ 288 (406)
..|+++-++ -+++.|.+.|++|+.+.. ..+--++ .++|.||- |.+....+|
T Consensus 25 ~G~~i~aT~--------gTa~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~~~~~~~~~~~------ 90 (116)
T cd01423 25 LGYKLYATE--------GTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSNRGKRVLDND------ 90 (116)
T ss_pred CCCEEEEcc--------HHHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCCCCCCccccCc------
Confidence 458887664 358889999999888732 2233333 25888876 333223333
Q ss_pred chHHHHHHHhhCCCceE
Q 045642 289 GLHVLALAAKKHDVPFV 305 (406)
Q Consensus 289 GT~~lAl~Ak~~~vPv~ 305 (406)
+.+=.+|-.++||++
T Consensus 91 --~~iRr~Av~~~ip~i 105 (116)
T cd01423 91 --YVMRRAADDFAVPLI 105 (116)
T ss_pred --EeeehhhHhhCCccc
Confidence 455567888999996
No 442
>PRK12414 putative aminotransferase; Provisional
Probab=30.34 E-value=5.6e+02 Score=25.64 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=50.1
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch--H----HHHHhhcCCEEEE
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS--A----VFAMISRVNMVIV 273 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds--a----v~~~m~~vd~Vll 273 (406)
..+++|.|.+..+..++......| -+|++. .|.+.+.... +...|..+..++.. . +..+-+.++.
T Consensus 91 ~~i~it~g~~~al~~~~~~l~~~g--d~Vlv~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~--- 161 (384)
T PRK12414 91 SEVTVIASASEGLYAAISALVHPG--DEVIYF--EPSFDSYAPI--VRLQGATPVAIKLSPEDFRVNWDEVAAAITP--- 161 (384)
T ss_pred CcEEEECChHHHHHHHHHHhcCCC--CEEEEe--CCCccchHHH--HHHcCCEEEEEecCccccccCHHHHHhhcCc---
Confidence 358888877766666665554333 345553 4666553222 33357766655421 0 1111111110
Q ss_pred cceeEeeCCCcccccch-------HHHHHHHhhCCCceEE
Q 045642 274 GVHAVMANGGVIAPAGL-------HVLALAAKKHDVPFVV 306 (406)
Q Consensus 274 GAdav~~nG~vvnk~GT-------~~lAl~Ak~~~vPv~V 306 (406)
....|+-+ ..-|.+|+ ..++-.|+++++++++
T Consensus 162 ~~~~v~i~-~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~ 200 (384)
T PRK12414 162 RTRMIIVN-TPHNPSATVFSAADLARLAQLTRNTDIVILS 200 (384)
T ss_pred ccEEEEEc-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 12233333 34577776 4456678889987775
No 443
>PRK00758 GMP synthase subunit A; Validated
Probab=30.29 E-value=1.9e+02 Score=25.96 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=40.9
Q ss_pred EEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcC-CEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 228 VFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRV-NMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 228 ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~v-d~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
|.|++....+. ..+++.|.+.|+++.++....-.--+.+. |.+|++- |.-....+. +.-..+..++|++-
T Consensus 2 i~iid~~~~~~-~~i~~~l~~~g~~~~~~~~~~~~~~l~~~~dgivi~G------g~~~~~~~~--~~~~l~~~~~PilG 72 (184)
T PRK00758 2 IVVVDNGGQYN-HLIHRTLRYLGVDAKIIPNTTPVEEIKAFEDGLILSG------GPDIERAGN--CPEYLKELDVPILG 72 (184)
T ss_pred EEEEECCCchH-HHHHHHHHHcCCcEEEEECCCCHHHHhhcCCEEEECC------CCChhhccc--cHHHHHhCCCCEEE
Confidence 34444333322 34577777788888877633222223445 6666632 221222221 22233457899999
Q ss_pred ecCCcccc
Q 045642 307 VASTHELC 314 (406)
Q Consensus 307 ~aes~K~~ 314 (406)
+|--+-+.
T Consensus 73 IC~G~Q~L 80 (184)
T PRK00758 73 ICLGHQLI 80 (184)
T ss_pred EeHHHHHH
Confidence 88665553
No 444
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=30.15 E-value=2.2e+02 Score=26.41 Aligned_cols=109 Identities=18% Similarity=0.207 Sum_probs=55.4
Q ss_pred cCcEEEeccChHHHHHHHHHH-HHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc----hHHH----HH---h
Q 045642 199 QNEVILTLGHSKFVKEFLCAA-KEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD----SAVF----AM---I 265 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A-~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D----sav~----~~---m 265 (406)
.|.+||+.|.++.+=..+... .++| .+|+++...+ .+...+.+.+...|.++.++ .| .++. .+ .
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G--~~V~~~~r~~-~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAG--ARVVLSARKA-EELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC--CEEEEEeCCH-HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 457788888777665555443 3334 4787776543 22334555566666554443 22 1221 21 1
Q ss_pred hcCCEEEEcceeEeeCCC------------cccccchHHHHHHHhhC-----CCceEEecCC
Q 045642 266 SRVNMVIVGVHAVMANGG------------VIAPAGLHVLALAAKKH-----DVPFVVVAST 310 (406)
Q Consensus 266 ~~vd~VllGAdav~~nG~------------vvnk~GT~~lAl~Ak~~-----~vPv~V~aes 310 (406)
..+|.|+..|-....... -.|-.|+..+..++..+ +...+|+..+
T Consensus 88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 246766665532111000 04556777777655443 4455555443
No 445
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=30.10 E-value=2.8e+02 Score=25.59 Aligned_cols=54 Identities=22% Similarity=0.173 Sum_probs=32.3
Q ss_pred cCcEEEeccChHHHHHHHHH-HHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEE
Q 045642 199 QNEVILTLGHSKFVKEFLCA-AKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIV 255 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~-A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~ 255 (406)
.|.++|+.|.++.+=..+.. ..+.| .+|+++...| .....+++.+.+.|-++.+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G--~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~ 60 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAG--AAVAIADLNQ-DGANAVADEINKAGGKAIG 60 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCCh-HHHHHHHHHHHhcCceEEE
Confidence 36778888887766655544 34344 4677665444 2345667777776755544
No 446
>PRK06114 short chain dehydrogenase; Provisional
Probab=30.05 E-value=4.1e+02 Score=24.54 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=43.3
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cch----HHHHHhh-------
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TDS----AVFAMIS------- 266 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~Ds----av~~~m~------- 266 (406)
.|.++|..|.|+-+=..+.....+ ...+|+++..++...-..+++.|...|-.+..+ .|- ++..++.
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~-~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 85 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQ-AGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELG 85 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456777778877776666554422 346788876544322246677787766555433 332 3333333
Q ss_pred cCCEEEEcc
Q 045642 267 RVNMVIVGV 275 (406)
Q Consensus 267 ~vd~VllGA 275 (406)
++|.+|-.|
T Consensus 86 ~id~li~~a 94 (254)
T PRK06114 86 ALTLAVNAA 94 (254)
T ss_pred CCCEEEECC
Confidence 357666655
No 447
>PRK05855 short chain dehydrogenase; Validated
Probab=30.01 E-value=3e+02 Score=28.78 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=53.7
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc----hHHHHHhh-------
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD----SAVFAMIS------- 266 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D----sav~~~m~------- 266 (406)
.+.++|+.|.|+.+=..+..... .+..+|+++..+ ......+++.+...|.++..+ .| .++..++.
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~-~~G~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFA-REGAEVVASDID-EAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHH-HCCCEEEEEeCC-HHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 35678888887776665544431 234567777433 333456777787777665543 22 23333333
Q ss_pred cCCEEEEcceeEeeCCCc-------------ccccchHHHHHHH
Q 045642 267 RVNMVIVGVHAVMANGGV-------------IAPAGLHVLALAA 297 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~v-------------vnk~GT~~lAl~A 297 (406)
++|.+|-.| ++...|.+ +|-.|+..++.++
T Consensus 392 ~id~lv~~A-g~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~ 434 (582)
T PRK05855 392 VPDIVVNNA-GIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLF 434 (582)
T ss_pred CCcEEEECC-ccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHH
Confidence 367777665 33332321 5667777766543
No 448
>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]
Probab=29.99 E-value=3.7e+02 Score=24.62 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccc--CcEEEec---cChHHHHHHHHHHHHcCCceEEEEecCCCC--
Q 045642 165 KKLKSELIKAVNELIED-INTCREGIAEQAMELIHQ--NEVILTL---GHSKFVKEFLCAAKEKKRSFEVFIADGAPK-- 236 (406)
Q Consensus 165 ~~~k~~l~~~i~~~~~e-~~~~~~~I~~~a~~~I~~--g~~ILT~---g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~-- 236 (406)
..++..+.+.-..+-.. ......+|++++..++.. ..+|..| +.-.....++..++++|+++-+=++...+.
T Consensus 6 ~~lR~~~~~~r~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ia~y~~~~~E~~~~~l~~~~l~~gk~l~lP~~~~~~~~f 85 (191)
T COG0212 6 SALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFNGEIDTRPLIRQALRRGKRLLLPKLRDYKLLF 85 (191)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccccccEEEEEeccCCCCCcHHHHHHHHHcCCEEEEeEEEcCccee
Confidence 55666666666665554 344555688888888863 5566663 344456677778877776543323221100
Q ss_pred ---cchHHHHHHHH--hCCCceEEEcchHHHHHh-hcCCEEEEcceeEeeCCCcccccchHHHHHHHhh--CCCceEEec
Q 045642 237 ---FEGHILAKELD--KKGLKAIVITDSAVFAMI-SRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKK--HDVPFVVVA 308 (406)
Q Consensus 237 ---~eG~~~a~~L~--~~GI~vt~I~Dsav~~~m-~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~--~~vPv~V~a 308 (406)
..+. ...+. ..||. -+.....-.. ..+|.|+++.=++-.+|.=+.+=|-|-=-.+|.. ...+.+-+|
T Consensus 86 ~~~~~~~--~~~~~~~~~gi~---eP~~~~~~~~~~~iDlvlvP~Vafd~~G~RLG~GgGyYDR~la~~~~~~~~~ig~~ 160 (191)
T COG0212 86 LRYIPDP--LQPLIKNRFGIL---EPGEYGRKIPPPEIDLVLVPLVAFDKQGYRLGYGGGYYDRYLANLRGRKTPTVGIA 160 (191)
T ss_pred EEecCCC--Cccccccccccc---CCCccCCccCCCcCCEEEeCceeECCCCccccCCCchHHHHHHhhccCCCCEEEEE
Confidence 0110 01111 12221 1111111112 5789999999999999999987776655555555 578888777
Q ss_pred CCccccccCCCCcc
Q 045642 309 STHELCSLYPHNLE 322 (406)
Q Consensus 309 es~K~~~~~~~d~~ 322 (406)
-...+.+..|.+.+
T Consensus 161 ~~~Q~v~~lP~e~h 174 (191)
T COG0212 161 YDCQLVDHLPREPH 174 (191)
T ss_pred EeeeeeccCCCCcc
Confidence 66666555544433
No 449
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.95 E-value=2e+02 Score=26.80 Aligned_cols=77 Identities=30% Similarity=0.352 Sum_probs=47.6
Q ss_pred EecCCCCcchHHHHHHHHhCCCceEEEc---chHHHHH---hhcCCEEEEcceeEeeC---------C--CcccccchHH
Q 045642 230 IADGAPKFEGHILAKELDKKGLKAIVIT---DSAVFAM---ISRVNMVIVGVHAVMAN---------G--GVIAPAGLHV 292 (406)
Q Consensus 230 V~EsrP~~eG~~~a~~L~~~GI~vt~I~---Dsav~~~---m~~vd~VllGAdav~~n---------G--~vvnk~GT~~ 292 (406)
|+-..+..+...+++.|.+.||++.-|+ ..+.-.+ -++...+++||-+|+.- | -++++.-.-.
T Consensus 9 Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~ 88 (201)
T PRK06015 9 VLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQE 88 (201)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHH
Confidence 4445556677888999999998755544 3333222 23466789999777531 1 2345555556
Q ss_pred HHHHHhhCCCceEE
Q 045642 293 LALAAKKHDVPFVV 306 (406)
Q Consensus 293 lAl~Ak~~~vPv~V 306 (406)
+.-.|+++++|++-
T Consensus 89 vi~~a~~~~i~~iP 102 (201)
T PRK06015 89 LLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHcCCCEeC
Confidence 66666777777664
No 450
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=29.89 E-value=1.8e+02 Score=28.08 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=47.2
Q ss_pred EeccChHHHHHHHHHHHHc-CCce--EEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEee
Q 045642 204 LTLGHSKFVKEFLCAAKEK-KRSF--EVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMA 280 (406)
Q Consensus 204 LT~g~S~tV~~~L~~A~~~-~~~f--~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~ 280 (406)
++.-|+..+.+.+.+++++ +.++ -||+.-..|.+|-..=.+-++. +|||+|=
T Consensus 134 ~~~~yd~~Lr~~~~~~a~~~~~~~~~Gvy~~~~GP~FeT~AE~r~~~~------------------------~Gad~Vg- 188 (248)
T TIGR01699 134 LANAYDAEYRALLQKVAKEEGFPLTEGVFVSYPGPNFETAAEIRMMQI------------------------IGGDVVG- 188 (248)
T ss_pred CCCccCHHHHHHHHHHHHHcCCceeeEEEEEeeCCCcCCHHHHHHHHH------------------------cCCcEEc-
Confidence 3344777777777666543 3222 2777777888776422222222 1555553
Q ss_pred CCCcccccchHHHHHHHhhCCCceEEecCC
Q 045642 281 NGGVIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 281 nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
+-+.+.|.+|+++++||.+++--
T Consensus 189 -------Ms~vpEa~~A~~~g~~~~~i~~V 211 (248)
T TIGR01699 189 -------MSVVPEVISARHCDLKVVAVSAI 211 (248)
T ss_pred -------cchhHHHHHHHHCCCcEEEEEEE
Confidence 34678999999999999998743
No 451
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=29.82 E-value=5.3e+02 Score=26.05 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=65.3
Q ss_pred HHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCC--------------Ccch----HHHHHHHHhC-
Q 045642 189 IAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAP--------------KFEG----HILAKELDKK- 249 (406)
Q Consensus 189 I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP--------------~~eG----~~~a~~L~~~- 249 (406)
++..+.+.+. +.+||..|....=-.+++.....|.. ++.+++..- ..-| ..+++.|.+.
T Consensus 18 ~g~~~q~~L~-~~~VlivG~GGlGs~~a~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 18 IGQQGQQSLF-DAKVAVIGAGGLGSPALLYLAGAGVG-HITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred cCHHHHHHHh-CCeEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 4445556664 46788888776655555555555543 333333221 1123 2456677765
Q ss_pred -CCceEEEc----chHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 250 -GLKAIVIT----DSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 250 -GI~vt~I~----Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
.+.++.+. ...+..+++.+|.||.+.|.+ .--+.+..+|+.+++|++..
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~---------~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNF---------DTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEE
Confidence 35555442 233455788999999998753 23356778999999998865
No 452
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=29.77 E-value=3e+02 Score=24.73 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=33.9
Q ss_pred cCcEEEeccChHHHHHHH-HHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcc
Q 045642 199 QNEVILTLGHSKFVKEFL-CAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L-~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGA 275 (406)
.|..||..|.+.++-..+ +.+.++| .+|+++.... ......|+++|.||...
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g--~~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat 95 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRN--ATVTVCHSKT-----------------------KNLKEHTKQADIVIVAV 95 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCC--CEEEEEECCc-----------------------hhHHHHHhhCCEEEEcC
Confidence 577899999988766633 4444333 3577766441 23456788999999865
No 453
>PLN02512 acetylglutamate kinase
Probab=29.76 E-value=5.3e+02 Score=25.48 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=64.9
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCce----EEEEecCCCCc----ch---HHHHHHHHhCCCceEEEc--c---------
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSF----EVFIADGAPKF----EG---HILAKELDKKGLKAIVIT--D--------- 258 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f----~ViV~EsrP~~----eG---~~~a~~L~~~GI~vt~I~--D--------- 258 (406)
..|++||..+.+...+....- ..+| +|.=.+.-+.. -| ..+...|.+.|++..-++ |
T Consensus 81 ~iVlVHGgG~~i~~~~~~~gi-~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~~L~~~Gv~av~l~g~d~~~i~a~~~ 159 (309)
T PLN02512 81 RPVLVHGGGPEINSWLKKVGI-EPQFKNGLRVTDAETMEVVEMVLVGKVNKSLVSLINKAGGTAVGLSGKDGRLLRARPS 159 (309)
T ss_pred CEEEEECCcHHHHHHHHHcCC-CCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHHHHHHHcCCCeEEeehhhCCEEEEEEc
Confidence 589999999988877766542 1122 11111111000 12 357888999999877663 1
Q ss_pred -----------------hHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCc-eEEecC
Q 045642 259 -----------------SAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVP-FVVVAS 309 (406)
Q Consensus 259 -----------------sav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vP-v~V~ae 309 (406)
..+..++..-...|+...++-.+|...|--+=...+.+|+..+.- ++.+++
T Consensus 160 ~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTd 228 (309)
T PLN02512 160 PNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTD 228 (309)
T ss_pred CcCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeC
Confidence 233444555556777767777788887754445555788888864 555544
No 454
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=29.75 E-value=3.2e+02 Score=26.78 Aligned_cols=94 Identities=12% Similarity=0.187 Sum_probs=50.8
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchH---HHHHhhcCCEEEEcc
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSA---VFAMISRVNMVIVGV 275 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsa---v~~~m~~vd~VllGA 275 (406)
...+++|.|.+..+..++. +... . +|++. .|.+.+...+ ....|+++..++-.. ....++. ..+
T Consensus 57 ~~~I~it~Gs~~~l~~~~~-~~~~--~-~vv~~--~P~y~~y~~~--~~~~G~~v~~vp~~~~~~~~~~l~~-----~~~ 123 (332)
T PRK06425 57 KIKVLIGPGLTHFIYRLLS-YINV--G-NIIIV--EPNFNEYKGY--AFTHGIRISALPFNLINNNPEILNN-----YNF 123 (332)
T ss_pred cceEEECCCHHHHHHHHHH-HhCC--C-cEEEe--CCChHHHHHH--HHHcCCeEEEEeCCcccCcHHHHhh-----cCC
Confidence 3346667776666555553 4422 2 46666 4887764333 344588887765321 1112221 133
Q ss_pred eeEeeCCCcccccch-------HHHHHHHhhCCCceEE
Q 045642 276 HAVMANGGVIAPAGL-------HVLALAAKKHDVPFVV 306 (406)
Q Consensus 276 dav~~nG~vvnk~GT-------~~lAl~Ak~~~vPv~V 306 (406)
..|+-+ .--|++|+ ..++-.|+++++.+++
T Consensus 124 k~v~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~ 160 (332)
T PRK06425 124 DLIFIV-SPDNPLGNLISRDSLLTISEICRKKGALLFI 160 (332)
T ss_pred CEEEEe-CCCCCcCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 344433 44567776 4556678888887764
No 455
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=29.74 E-value=3.5e+02 Score=26.58 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=26.0
Q ss_pred CcEEE-eccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc
Q 045642 200 NEVIL-TLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT 257 (406)
Q Consensus 200 g~~IL-T~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~ 257 (406)
..+++ |.|.+..+..++....+.| -+|++.+ |.+.+.. ..+...|+++..++
T Consensus 87 ~~i~~~~~Ga~~~i~~~~~~~~~~g--d~vlv~~--p~y~~~~--~~~~~~g~~~~~~~ 139 (361)
T PRK00950 87 ENIIVGGDGMDEVIDTLMRTFIDPG--DEVIIPT--PTFSYYE--ISAKAHGAKPVYAK 139 (361)
T ss_pred HHEEEeCCCHHHHHHHHHHHhcCCC--CEEEEcC--CChHHHH--HHHHHcCCEEEEee
Confidence 34566 4444444444444433233 2455543 6554432 23456788887774
No 456
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=29.56 E-value=2.9e+02 Score=28.90 Aligned_cols=42 Identities=10% Similarity=0.285 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhcccCcEEEec--cChHHHHHHHHHHHHcC
Q 045642 182 INTCREGIAEQAMELIHQNEVILTL--GHSKFVKEFLCAAKEKK 223 (406)
Q Consensus 182 ~~~~~~~I~~~a~~~I~~g~~ILT~--g~S~tV~~~L~~A~~~~ 223 (406)
++...+.+-+.....+-.|-.+++| ..+-.|++|.+.|.++|
T Consensus 68 Lr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nG 111 (472)
T COG5016 68 LRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENG 111 (472)
T ss_pred HHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcC
Confidence 3333344444444455556666663 34556666777666655
No 457
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.52 E-value=3.2e+02 Score=28.20 Aligned_cols=88 Identities=8% Similarity=0.040 Sum_probs=51.3
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc-chHHHHHhhcCCEEEEcceeEe
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT-DSAVFAMISRVNMVIVGVHAVM 279 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~-Dsav~~~m~~vd~VllGAdav~ 279 (406)
..|+.+|-..+=...+....+.+-.++|.+.|.++.. .+...|.+ ||.+..-. +.. .+..+|.||++.- |-
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~---~~~~~l~~-g~~~~~g~~~~~---~~~~~d~vV~Spg-I~ 79 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETP---PGQEQLPE-DVELHSGGWNLE---WLLEADLVVTNPG-IA 79 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCc---hhHHHhhc-CCEEEeCCCChH---HhccCCEEEECCC-CC
Confidence 4566666555555555555544334889999988753 23345654 88776552 322 2367888877652 21
Q ss_pred eCCCcccccchHHHHHHHhhCCCceE
Q 045642 280 ANGGVIAPAGLHVLALAAKKHDVPFV 305 (406)
Q Consensus 280 ~nG~vvnk~GT~~lAl~Ak~~~vPv~ 305 (406)
. +.+.-..|++.++|++
T Consensus 80 ~---------~~p~~~~a~~~gi~i~ 96 (438)
T PRK04663 80 L---------ATPEIQQVLAAGIPVV 96 (438)
T ss_pred C---------CCHHHHHHHHCCCcEE
Confidence 1 2355566666677765
No 458
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=29.50 E-value=2.3e+02 Score=21.41 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=30.1
Q ss_pred EEeccChHHHHHHHHHHHHcCCceEEEEecCCCCc-c----hHHHHHHHHhCCCceE
Q 045642 203 ILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKF-E----GHILAKELDKKGLKAI 254 (406)
Q Consensus 203 ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~-e----G~~~a~~L~~~GI~vt 254 (406)
|+.+|.+.+-..+-..+.+.|.+.+++....++.. - ...+.+.|.+.||++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 56677776666666666656655544444444441 1 2345667778877543
No 459
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=29.49 E-value=4e+02 Score=26.60 Aligned_cols=65 Identities=26% Similarity=0.380 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCceEEEcc-------h-HHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhC----CCceEEec
Q 045642 241 ILAKELDKKGLKAIVITD-------S-AVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKH----DVPFVVVA 308 (406)
Q Consensus 241 ~~a~~L~~~GI~vt~I~D-------s-av~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~----~vPv~V~a 308 (406)
..++.|.+.||++++|.- . .+...+++..+|+ ++.++....-.|+....+++... ..|+.-++
T Consensus 218 eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv-----~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~ 292 (327)
T PRK09212 218 EAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNRLV-----VVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVT 292 (327)
T ss_pred HHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEE-----EEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEc
Confidence 334455556666665432 1 3556667777776 35666677777888888888774 34666555
Q ss_pred CC
Q 045642 309 ST 310 (406)
Q Consensus 309 es 310 (406)
..
T Consensus 293 ~~ 294 (327)
T PRK09212 293 GK 294 (327)
T ss_pred CC
Confidence 43
No 460
>PRK15482 transcriptional regulator MurR; Provisional
Probab=29.48 E-value=2.3e+02 Score=27.27 Aligned_cols=77 Identities=21% Similarity=0.206 Sum_probs=50.8
Q ss_pred EEEEecCCCC-cchHHHHHHHHhCCCceEEEcchHHHHHh----hcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCC
Q 045642 227 EVFIADGAPK-FEGHILAKELDKKGLKAIVITDSAVFAMI----SRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHD 301 (406)
Q Consensus 227 ~ViV~EsrP~-~eG~~~a~~L~~~GI~vt~I~Dsav~~~m----~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~ 301 (406)
+|++.-.+.. .-+..+...|...|.+|.+..|......+ ..=|.+|+-.. .|. .--+..++-.||..|
T Consensus 137 ~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~----sg~---t~~~~~~~~~a~~~g 209 (285)
T PRK15482 137 FIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISY----SGS---KKEIVLCAEAARKQG 209 (285)
T ss_pred eeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeC----CCC---CHHHHHHHHHHHHCC
Confidence 4666655432 23467778888899999999988765443 33455554321 221 223567788899999
Q ss_pred CceEEecCC
Q 045642 302 VPFVVVAST 310 (406)
Q Consensus 302 vPv~V~aes 310 (406)
+|+++++..
T Consensus 210 ~~iI~IT~~ 218 (285)
T PRK15482 210 ATVIAITSL 218 (285)
T ss_pred CEEEEEeCC
Confidence 999999865
No 461
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=29.45 E-value=2.8e+02 Score=30.47 Aligned_cols=109 Identities=13% Similarity=0.123 Sum_probs=62.6
Q ss_pred ccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEE--Ecch-H-HHHHhhcCCEEEE
Q 045642 198 HQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIV--ITDS-A-VFAMISRVNMVIV 273 (406)
Q Consensus 198 ~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~--I~Ds-a-v~~~m~~vd~Vll 273 (406)
..+.+||+.|.+..+=.-|..+..+....+|+++.-.+.. ....+...+++... +.|. . +..+++++|.||=
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~----~~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViH 388 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDA----ISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLP 388 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchh----hhhhcCCCceEEEeccccCcHHHHHHHhcCCCEEEE
Confidence 3567899999888777777665533234788877543321 11112222333321 1232 2 3446778998885
Q ss_pred cceeEeeCCC--------cccccchHHHHHHHhhCCCceEEecCC
Q 045642 274 GVHAVMANGG--------VIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 274 GAdav~~nG~--------vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
-|-....... -+|-.||..+.-+|+.++++|+.++.+
T Consensus 389 lAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~ 433 (660)
T PRK08125 389 LVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTS 433 (660)
T ss_pred CccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcch
Confidence 4432111001 146789999999999999887666554
No 462
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=29.37 E-value=1.4e+02 Score=27.62 Aligned_cols=84 Identities=19% Similarity=0.197 Sum_probs=46.6
Q ss_pred EEEEecCCCCcchHHHHHHHHhCCC--ceEEEcchHHHHHhhcCCEEEEcceeEe-eCCCcccccchHHHHHH--HhhCC
Q 045642 227 EVFIADGAPKFEGHILAKELDKKGL--KAIVITDSAVFAMISRVNMVIVGVHAVM-ANGGVIAPAGLHVLALA--AKKHD 301 (406)
Q Consensus 227 ~ViV~EsrP~~eG~~~a~~L~~~GI--~vt~I~Dsav~~~m~~vd~VllGAdav~-~nG~vvnk~GT~~lAl~--Ak~~~ 301 (406)
+|.|++-.=++- ...++.|.+.|. ++.++.+..- +.++|.||+.--..+ .+-..+...|-.. ++. +...+
T Consensus 3 ~~~iid~g~gn~-~s~~~al~~~g~~~~v~~~~~~~~---l~~~d~lIlpG~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 77 (209)
T PRK13146 3 TVAIIDYGSGNL-RSAAKALERAGAGADVVVTADPDA---VAAADRVVLPGVGAFADCMRGLRAVGLGE-AVIEAVLAAG 77 (209)
T ss_pred eEEEEECCCChH-HHHHHHHHHcCCCccEEEECCHHH---hcCCCEEEECCCCcHHHHHHHHHHCCcHH-HHHHHHHhCC
Confidence 556665443333 467888999998 7777765422 578999988521100 0000112223222 222 23478
Q ss_pred CceEEecCCccccc
Q 045642 302 VPFVVVASTHELCS 315 (406)
Q Consensus 302 vPv~V~aes~K~~~ 315 (406)
+||+-+|--+-+.-
T Consensus 78 ~PvlGiC~G~q~l~ 91 (209)
T PRK13146 78 RPFLGICVGMQLLF 91 (209)
T ss_pred CcEEEECHHHHHHh
Confidence 99999987655433
No 463
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=29.37 E-value=4.2e+02 Score=27.10 Aligned_cols=112 Identities=17% Similarity=0.177 Sum_probs=65.1
Q ss_pred cCcEEEeccChHHHHH-HHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc----hHHHHHhhcCCEEE
Q 045642 199 QNEVILTLGHSKFVKE-FLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD----SAVFAMISRVNMVI 272 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~-~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D----sav~~~m~~vd~Vl 272 (406)
.+.++|+.|.|.-+-+ ++....+.+...+|++.+-.|...- .-+.......-.++++ .| ..+......+ .|+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~-~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv 80 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSN-LPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VVV 80 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccc-cchhhhcccCCceeEEecchhhhhhhhhhccCc-eEE
Confidence 3567788887776555 4455555565799999999986311 0011111133445555 33 2334444455 333
Q ss_pred EcceeEeeCC--------CcccccchHHHHHHHhhCCCceEEecCCcc
Q 045642 273 VGVHAVMANG--------GVIAPAGLHVLALAAKKHDVPFVVVASTHE 312 (406)
Q Consensus 273 lGAdav~~nG--------~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K 312 (406)
.-|......= .-+|--||..+--+|+..+|+.+|-+.+.-
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~ 128 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAY 128 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCce
Confidence 3222222111 125788999999999999999999776643
No 464
>PRK02948 cysteine desulfurase; Provisional
Probab=29.33 E-value=5.7e+02 Score=25.33 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=49.1
Q ss_pred cCcEEEeccChHHHHHHHHHHHHc--CCceEEEEecCCCCcch-HHHHHHHHhCCCceEEEc-ch-------HHHHHhhc
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEK--KRSFEVFIADGAPKFEG-HILAKELDKKGLKAIVIT-DS-------AVFAMISR 267 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~--~~~f~ViV~EsrP~~eG-~~~a~~L~~~GI~vt~I~-Ds-------av~~~m~~ 267 (406)
...+++|-|.+..+..++..+... +..-+|++. .+.+.+ ....+.+...|+++..++ |. .+...+..
T Consensus 60 ~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~--~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~ 137 (381)
T PRK02948 60 EQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITT--PMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITP 137 (381)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEEC--CcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCC
Confidence 345666665555555455444321 222344443 333333 233445667898888875 21 12222222
Q ss_pred CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 268 VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 268 vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
-+++++-+..-...|.+.. + ..++-+|+.++++|+|
T Consensus 138 ~~~lv~~~~~~n~tG~~~~-~--~~I~~l~~~~~~~viv 173 (381)
T PRK02948 138 DTVLASIQHANSEIGTIQP-I--AEIGALLKKYNVLFHS 173 (381)
T ss_pred CCEEEEEECCcCCcEeehh-H--HHHHHHHHHcCCEEEE
Confidence 2233332222223333332 2 2477778888887766
No 465
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=29.30 E-value=2e+02 Score=24.80 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=29.6
Q ss_pred EEEeccChHHHHHHHHHHHHcC---CceEEEEecCCCCcchHHHHHHHHhC
Q 045642 202 VILTLGHSKFVKEFLCAAKEKK---RSFEVFIADGAPKFEGHILAKELDKK 249 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~---~~f~ViV~EsrP~~eG~~~a~~L~~~ 249 (406)
+|.||.....+.++|....++. ..++|+|++..........++.+...
T Consensus 2 ii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~ 52 (185)
T cd04179 2 VIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAAR 52 (185)
T ss_pred eecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHh
Confidence 3556666667777777766553 46778877766554555555555443
No 466
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=29.27 E-value=2.4e+02 Score=27.85 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=66.9
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEecCCCCcchH----HHHHHHH-hCCCceEEEcchH--HHHHhhcCCEEEEcceeEe
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH----ILAKELD-KKGLKAIVITDSA--VFAMISRVNMVIVGVHAVM 279 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~----~~a~~L~-~~GI~vt~I~Dsa--v~~~m~~vd~VllGAdav~ 279 (406)
-...+++.+++.|.+.+..+-+-+.++.=.+-|. .+++.++ +..|||.+-.|-+ .-.+++-++. |-.+|+
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~---GftSVM 102 (284)
T PRK09195 26 HNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRS---GVRSVM 102 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHc---CCCEEE
Confidence 3567888888888877766433333332223342 2344444 4789999999976 3444444444 899999
Q ss_pred eCCCcc----cccchHHHHHHHhhCCCceEE
Q 045642 280 ANGGVI----APAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 280 ~nG~vv----nk~GT~~lAl~Ak~~~vPv~V 306 (406)
-||+-. |-.=|..++-.|+.+|++|=.
T Consensus 103 ~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEa 133 (284)
T PRK09195 103 IDGSHLPFAQNISLVKEVVDFCHRFDVSVEA 133 (284)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999987 567788999999999998754
No 467
>PRK08636 aspartate aminotransferase; Provisional
Probab=29.14 E-value=6.1e+02 Score=25.57 Aligned_cols=99 Identities=15% Similarity=0.127 Sum_probs=53.9
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc---ch-----------HHHHHhh
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT---DS-----------AVFAMIS 266 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~---Ds-----------av~~~m~ 266 (406)
.+++|.|....+..++....+.| -+|+|. .|.+.+...+-. ..|.++..++ |. .+...++
T Consensus 97 ~I~it~G~~~al~~~~~~l~~~g--d~Vlv~--~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 170 (403)
T PRK08636 97 EVVATMGSKEGYVHLVQAITNPG--DVAIVP--DPAYPIHSQAFI--LAGGNVHKMPLEYNEDFELDEDQFFENLEKALR 170 (403)
T ss_pred eEEECCChHHHHHHHHHHhCCCC--CEEEEc--CCCCcchHHHHH--hcCCEEEEEeccccccCccChhhhhhHHHHHHh
Confidence 58889988877776666555333 244443 488877544433 3677776653 12 1122222
Q ss_pred ----cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 267 ----RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 267 ----~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
++..+++- .-=-+-|.++..-==..++-.|++|++.+++
T Consensus 171 ~~~~~~~~i~~~-~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~ 213 (403)
T PRK08636 171 ESSPKPKYVVVN-FPHNPTTATVEKSFYERLVALAKKERFYIIS 213 (403)
T ss_pred hccCCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 23333332 1012334444444345677788999988774
No 468
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=29.12 E-value=71 Score=29.42 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=37.0
Q ss_pred EEEeccChHHHHHHHHHHHH---cCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch
Q 045642 202 VILTLGHSKFVKEFLCAAKE---KKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS 259 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~---~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds 259 (406)
-++++..+++|+.++....+ .-....+++. |..+++.|.+.|+++.+++..
T Consensus 170 ~~v~ftS~~~~~~~~~~~~~~~~~~~~~~~~~i-------g~~ta~~l~~~g~~~~~va~~ 223 (231)
T PF02602_consen 170 DAVVFTSPSAVRAFLELLKKNGALLKRVPIVAI-------GPRTAKALRELGFKVDIVAER 223 (231)
T ss_dssp SEEEESSHHHHHHHHHHSSGHHHHHTTSEEEES-------SHHHHHHHHHTT-SCSEEESS
T ss_pred CEEEECCHHHHHHHHHHhHhhhhhhhCCEEEEE-------CHHHHHHHHHcCCCceEECCC
Confidence 45566778899998887653 2345566665 889999999999999777653
No 469
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=29.11 E-value=5.8e+02 Score=25.33 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=50.3
Q ss_pred cCcEEEeccChHHHHHHHHHHHH----cCCceEEEEecC-CCCcchHHHHHHHHhCCCceEEEc-c-------hHHHHHh
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKE----KKRSFEVFIADG-APKFEGHILAKELDKKGLKAIVIT-D-------SAVFAMI 265 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~----~~~~f~ViV~Es-rP~~eG~~~a~~L~~~GI~vt~I~-D-------sav~~~m 265 (406)
..++++|.|.+..+..++..+.. +..+-+|++.+. .|.+.. ....+...|+++..++ | ..+...+
T Consensus 60 ~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~--~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i 137 (382)
T TIGR03403 60 LDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRA--TCAFLESLGVEVTYLPINEQGTITAEQVREAI 137 (382)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHH--HHHHHHHCCCEEEEEecCCCCCCCHHHHHHhc
Confidence 34677777665555555554321 121235666643 233322 3345667899988875 2 1222222
Q ss_pred h-cCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEE
Q 045642 266 S-RVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVV 306 (406)
Q Consensus 266 ~-~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V 306 (406)
. +...|++ ...=-..|.+.. + ..++-.|+.++++++|
T Consensus 138 ~~~t~lv~~-~~~~n~tG~~~~-~--~~I~~la~~~g~~~iv 175 (382)
T TIGR03403 138 TEKTALVSV-MWANNETGMIFP-I--KEIGEICKERGVLFHT 175 (382)
T ss_pred ccCCeEEEE-EcccCCCccccC-H--HHHHHHHHHcCCEEEE
Confidence 2 2222333 221122233222 2 3577788889988876
No 470
>PRK09082 methionine aminotransferase; Validated
Probab=29.11 E-value=5.9e+02 Score=25.43 Aligned_cols=92 Identities=22% Similarity=0.255 Sum_probs=49.0
Q ss_pred cEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch---------HHHHHhh-cCCE
Q 045642 201 EVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS---------AVFAMIS-RVNM 270 (406)
Q Consensus 201 ~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds---------av~~~m~-~vd~ 270 (406)
.+++|-|.+..+..++......| -+|++. .|.+-+...+. ...|.++..++-. .+...+. ++..
T Consensus 93 ~i~~t~G~~~al~~~~~~~~~~g--d~Vli~--~p~y~~~~~~~--~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 166 (386)
T PRK09082 93 EITVTAGATEALFAAILALVRPG--DEVIVF--DPSYDSYAPAI--ELAGGRAVRVALQPPDFRVDWQRFAAAISPRTRL 166 (386)
T ss_pred cEEEeCCHHHHHHHHHHHHcCCC--CEEEEe--CCCchhhHHHH--HHcCCEEEEEecCcccccCCHHHHHHhcCccceE
Confidence 47777777766666665544333 345543 46665543333 3357776666432 2222222 3333
Q ss_pred EEEcceeEeeCCCcccccch-------HHHHHHHhhCCCceEE
Q 045642 271 VIVGVHAVMANGGVIAPAGL-------HVLALAAKKHDVPFVV 306 (406)
Q Consensus 271 VllGAdav~~nG~vvnk~GT-------~~lAl~Ak~~~vPv~V 306 (406)
|++ + ..-|..|+ ..++-.|+++++.+++
T Consensus 167 v~l-------~-~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~ 201 (386)
T PRK09082 167 IIL-------N-TPHNPSGTVWSAADMRALWQLIAGTDIYVLS 201 (386)
T ss_pred EEE-------e-CCCCCCCcCCCHHHHHHHHHHHHHCCEEEEE
Confidence 332 2 23466664 4566788889977664
No 471
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=29.08 E-value=5.7e+02 Score=25.17 Aligned_cols=54 Identities=17% Similarity=0.060 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEE---cceeEeeCCCcccccchHHHHH
Q 045642 240 HILAKELDKKGLKAIVITDSAVFAMISRVNMVIV---GVHAVMANGGVIAPAGLHVLAL 295 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~Vll---GAdav~~nG~vvnk~GT~~lAl 295 (406)
...++.+.+.|+++..|+-..-..+.+.+|.+|. |.+.+ .|+..-+.|+.+..+
T Consensus 143 i~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~~~g~E~~--~~st~~~s~~aqk~i 199 (291)
T TIGR00274 143 IAGLQYARSLGALTISIACNPKSAASEIADIAIETIVGPEIL--TGSSRLKAGTAQKMV 199 (291)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEecCCCCccc--cccchhhHHHHHHHH
Confidence 4677888889999888875444444555777774 56655 355545556655543
No 472
>PRK12828 short chain dehydrogenase; Provisional
Probab=29.07 E-value=2.6e+02 Score=25.22 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=30.2
Q ss_pred cCcEEEeccChHHHHHHHHH-HHHcCCceEEEEecCCCCcchHHHHHHHHhCCCce
Q 045642 199 QNEVILTLGHSKFVKEFLCA-AKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKA 253 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~-A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~v 253 (406)
.+.+||..|.++.+=..+.. ..++ ..+|+++...|... ......+...++..
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~--G~~v~~~~r~~~~~-~~~~~~~~~~~~~~ 58 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAAR--GARVALIGRGAAPL-SQTLPGVPADALRI 58 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHC--CCeEEEEeCChHhH-HHHHHHHhhcCceE
Confidence 36788888887766555443 4433 45788887655322 23445565555543
No 473
>PRK09411 carbamate kinase; Reviewed
Probab=29.06 E-value=1.8e+02 Score=28.97 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=38.2
Q ss_pred HHhcccCcEEEeccChHHHHHHHHHHHHcC----CceEEEEecCCCCcchHHHHHHHHhCCCc
Q 045642 194 MELIHQNEVILTLGHSKFVKEFLCAAKEKK----RSFEVFIADGAPKFEGHILAKELDKKGLK 252 (406)
Q Consensus 194 ~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~----~~f~ViV~EsrP~~eG~~~a~~L~~~GI~ 252 (406)
++++....+|+|||+...|=.++....... -.+.|.+++|. ++=|..+.++|.+.|++
T Consensus 37 a~l~~~~~~vitHGNGPQVG~l~~~~~~~~~~~~~pld~~~a~sq-G~iGy~l~q~l~~~~~~ 98 (297)
T PRK09411 37 ARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQ-GMIGYMLAQSLSAQPQM 98 (297)
T ss_pred HHHHHcCCEEEEeCCccHHHHHHHHHHhhcCCCCCCchhhhhhcc-cHHHHHHHHHHHHcCCC
Confidence 345555789999999999987776533221 22444444443 33468899999998864
No 474
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=29.01 E-value=5.1e+02 Score=27.71 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=46.6
Q ss_pred cccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH-------------HH---HHHHHhCCCceEEE----
Q 045642 197 IHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH-------------IL---AKELDKKGLKAIVI---- 256 (406)
Q Consensus 197 I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~-------------~~---a~~L~~~GI~vt~I---- 256 (406)
...|+.|+++|....=..+...+++.| .+|+|.|..|...|. .+ ...+.+.|+++.+-
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 457899999988765555555555555 478899977654331 11 23455678765542
Q ss_pred cchHHHHHhhcCCEEEEcc
Q 045642 257 TDSAVFAMISRVNMVIVGV 275 (406)
Q Consensus 257 ~Dsav~~~m~~vd~VllGA 275 (406)
.|-.........|.|++++
T Consensus 212 ~~~~~~~~~~~~D~Vi~At 230 (564)
T PRK12771 212 EDITLEQLEGEFDAVFVAI 230 (564)
T ss_pred CcCCHHHHHhhCCEEEEee
Confidence 2222333345688888854
No 475
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=28.97 E-value=6.7e+02 Score=25.97 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=48.4
Q ss_pred cCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHh--CCCceEEEcchHH---HHHhhcCCEEEE
Q 045642 199 QNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDK--KGLKAIVITDSAV---FAMISRVNMVIV 273 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~--~GI~vt~I~Dsav---~~~m~~vd~Vll 273 (406)
.|.++..++.+..+..+-+-..+-|-....+++...+..--..+...|.+ .+.++.++.+.-. ...+.+.
T Consensus 302 ~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~----- 376 (435)
T cd01974 302 HGKKFALYGDPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTE----- 376 (435)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhc-----
Confidence 57788888887776655555555555544444433222111223333444 2233333333222 2223332
Q ss_pred cceeEeeCCCcccccchHHHHHHHhhCCCceEEec
Q 045642 274 GVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVA 308 (406)
Q Consensus 274 GAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~a 308 (406)
++|-++ |+..-..+|++.++|++.++
T Consensus 377 ~pDlii---------G~s~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 377 PVDLLI---------GNTYGKYIARDTDIPLVRFG 402 (435)
T ss_pred CCCEEE---------ECccHHHHHHHhCCCEEEee
Confidence 233333 22334578999999998765
No 476
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=28.96 E-value=5.7e+02 Score=25.17 Aligned_cols=94 Identities=11% Similarity=0.135 Sum_probs=56.4
Q ss_pred EEeccChHHHHHHHHHHHHcCCceEEE-EecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeC
Q 045642 203 ILTLGHSKFVKEFLCAAKEKKRSFEVF-IADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMAN 281 (406)
Q Consensus 203 ILT~g~S~tV~~~L~~A~~~~~~f~Vi-V~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~n 281 (406)
|..+|....-...+....+ .+.+++. |++-.|...|...++ +.|+++++ .|-....-.+++|.|++.+-.
T Consensus 4 VAIIG~G~IG~~h~~~ll~-~~~~elvaV~d~d~es~~la~A~---~~Gi~~~~-~~~e~ll~~~dIDaV~iaTp~---- 74 (285)
T TIGR03215 4 VAIIGSGNIGTDLMYKLLR-SEHLEMVAMVGIDPESDGLARAR---ELGVKTSA-EGVDGLLANPDIDIVFDATSA---- 74 (285)
T ss_pred EEEEeCcHHHHHHHHHHHh-CCCcEEEEEEeCCcccHHHHHHH---HCCCCEEE-CCHHHHhcCCCCCEEEECCCc----
Confidence 4445543222333344442 4556655 667777766755554 46887664 221211223579999987522
Q ss_pred CCcccccchHHHHHHHhhCCCceEEecCCc
Q 045642 282 GGVIAPAGLHVLALAAKKHDVPFVVVASTH 311 (406)
Q Consensus 282 G~vvnk~GT~~lAl~Ak~~~vPv~V~aes~ 311 (406)
--....+..|..+|++|+...+.+
T Consensus 75 ------~~H~e~a~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 75 ------KAHARHARLLAELGKIVIDLTPAA 98 (285)
T ss_pred ------HHHHHHHHHHHHcCCEEEECCccc
Confidence 123678889999999999988887
No 477
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=28.88 E-value=4.5e+02 Score=27.68 Aligned_cols=113 Identities=12% Similarity=0.224 Sum_probs=68.4
Q ss_pred cCcEEEe-----ccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcchHHHHHhh-----cC
Q 045642 199 QNEVILT-----LGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDSAVFAMIS-----RV 268 (406)
Q Consensus 199 ~g~~ILT-----~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~-----~v 268 (406)
.|..||. +|.|..++.+....++++ -.+||.--.-..|=+.=|.+|--..=+..+.+...+-.+.. +-
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 5778887 678988888887777544 23455422212222344555542222344555554444433 46
Q ss_pred CEEEE-cceeEeeCC------Ccc-cccchHHHHHHHhhCCCceEEecCCccc
Q 045642 269 NMVIV-GVHAVMANG------GVI-APAGLHVLALAAKKHDVPFVVVASTHEL 313 (406)
Q Consensus 269 d~Vll-GAdav~~nG------~vv-nk~GT~~lAl~Ak~~~vPv~V~aes~K~ 313 (406)
+.||+ ....++.+. ++. -+-.|..+--.||..+++++.++.-.|=
T Consensus 170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKe 222 (456)
T COG1066 170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKE 222 (456)
T ss_pred CEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEccc
Confidence 77776 445555553 333 2556778888999999999999877664
No 478
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=28.83 E-value=1.5e+02 Score=29.92 Aligned_cols=72 Identities=19% Similarity=0.275 Sum_probs=46.7
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc-hHHHHHhh--cCCEEEEcce
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD-SAVFAMIS--RVNMVIVGVH 276 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D-sav~~~m~--~vd~VllGAd 276 (406)
..+||.+|.+..-..++..|.+ ..++|++++..|...|..++.... -++ +.| .++..+.+ ++|.|+.+.+
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~--~G~~v~~~~~~~~~~~~~~ad~~~--~~~---~~d~~~l~~~~~~~~id~vi~~~e 84 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQR--LGVEVIAVDRYANAPAMQVAHRSH--VID---MLDGDALRAVIEREKPDYIVPEIE 84 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCCCCchHHhhhheE--ECC---CCCHHHHHHHHHHhCCCEEEEeeC
Confidence 3489999988777777777664 467899999999877765443210 011 123 34444555 6888888876
Q ss_pred eE
Q 045642 277 AV 278 (406)
Q Consensus 277 av 278 (406)
.+
T Consensus 85 ~~ 86 (395)
T PRK09288 85 AI 86 (395)
T ss_pred cC
Confidence 54
No 479
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=28.80 E-value=3.7e+02 Score=25.52 Aligned_cols=109 Identities=12% Similarity=0.136 Sum_probs=64.0
Q ss_pred HHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCC--------------Ccch----HHHHHHHHhCC--C
Q 045642 192 QAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAP--------------KFEG----HILAKELDKKG--L 251 (406)
Q Consensus 192 ~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP--------------~~eG----~~~a~~L~~~G--I 251 (406)
.+.+.|. +..|+..|...+=-.+.+...+.|.. ++++++... ..-| ..+++.|.+.+ +
T Consensus 4 e~~~~L~-~~~VlVvG~GGvGs~va~~Lar~GVg-~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~ 81 (231)
T cd00755 4 EGLEKLR-NAHVAVVGLGGVGSWAAEALARSGVG-KLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPEC 81 (231)
T ss_pred HHHHHHh-CCCEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCc
Confidence 4445554 35678888776666666666656643 334433221 1113 35677777755 5
Q ss_pred ceEEEc-----chHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCc
Q 045642 252 KAIVIT-----DSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTH 311 (406)
Q Consensus 252 ~vt~I~-----Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~ 311 (406)
.++.+. ++.-..+..+.|.||...|.+-. -..+.-.|+.+++||+.....-
T Consensus 82 ~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~---------k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 82 EVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRA---------KVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred EEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHH---------HHHHHHHHHHhCCCEEEEeCCc
Confidence 555444 33333333568988888776432 2446678899999999875544
No 480
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=28.73 E-value=1.9e+02 Score=25.79 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=47.2
Q ss_pred EEEEecCCCC-cchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceE
Q 045642 227 EVFIADGAPK-FEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFV 305 (406)
Q Consensus 227 ~ViV~EsrP~-~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~ 305 (406)
+|++.-.+-. .-+..++..|...|+++..+.|.. ...+.+=|.||+-. ..|. ..-+..++-.||..|+|++
T Consensus 35 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~-~~~~~~~D~vI~iS----~sG~---t~~~i~~~~~ak~~g~~iI 106 (179)
T cd05005 35 RIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETT-TPAIGPGDLLIAIS----GSGE---TSSVVNAAEKAKKAGAKVV 106 (179)
T ss_pred eEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCC-CCCCCCCCEEEEEc----CCCC---cHHHHHHHHHHHHCCCeEE
Confidence 4666644432 234567778888999999998853 22233444444321 1222 2234567778999999999
Q ss_pred EecCC
Q 045642 306 VVAST 310 (406)
Q Consensus 306 V~aes 310 (406)
+++..
T Consensus 107 ~IT~~ 111 (179)
T cd05005 107 LITSN 111 (179)
T ss_pred EEECC
Confidence 99865
No 481
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=28.61 E-value=2.6e+02 Score=26.79 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=58.0
Q ss_pred EEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE--cc-hHHHHHhhcCCEEEEcceeE
Q 045642 202 VILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI--TD-SAVFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 202 ~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I--~D-sav~~~m~~vd~VllGAdav 278 (406)
+||..|.++.+=..|..+.. .+..+|+++..+|... ..+...++..... .| ..+..+++.+|.|+-.|-..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~-~~g~~V~~~~r~~~~~-----~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~ 75 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLL-EQGEEVRVLVRPTSDR-----RNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADY 75 (328)
T ss_pred eEEEECCccchhHHHHHHHH-HCCCEEEEEEecCccc-----cccccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence 46777776655555544331 1235788777655321 1233335443221 22 35666777888888765321
Q ss_pred ee-CC-----CcccccchHHHHHHHhhCCCceEEecCC
Q 045642 279 MA-NG-----GVIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 279 ~~-nG-----~vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
-. .. --.|-.|+..++-+|+..+++-+|...+
T Consensus 76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 113 (328)
T TIGR03466 76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSS 113 (328)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 00 00 1135678888998899888877776665
No 482
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=28.58 E-value=2.6e+02 Score=26.31 Aligned_cols=69 Identities=30% Similarity=0.453 Sum_probs=35.1
Q ss_pred hHHHHHHHHhCCCceEEEcch-H-HHHHhh--cCCEEEEccee---------EeeCCCcccccc----hHHHHHHHhh-C
Q 045642 239 GHILAKELDKKGLKAIVITDS-A-VFAMIS--RVNMVIVGVHA---------VMANGGVIAPAG----LHVLALAAKK-H 300 (406)
Q Consensus 239 G~~~a~~L~~~GI~vt~I~Ds-a-v~~~m~--~vd~VllGAda---------v~~nG~vvnk~G----T~~lAl~Ak~-~ 300 (406)
|..+|+.|.+.|.+|++|-+. . +-.+++ ....|+.|-.. +-.-..++.-+| ...+|++|+. +
T Consensus 12 G~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~ 91 (225)
T COG0569 12 GRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEF 91 (225)
T ss_pred HHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhc
Confidence 667788888888777776432 2 233233 23333332110 011112222333 3556666655 9
Q ss_pred CCceEEe
Q 045642 301 DVPFVVV 307 (406)
Q Consensus 301 ~vPv~V~ 307 (406)
|+|-+++
T Consensus 92 gv~~via 98 (225)
T COG0569 92 GVPRVIA 98 (225)
T ss_pred CCCcEEE
Confidence 9997776
No 483
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=28.39 E-value=4.2e+02 Score=23.47 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=25.8
Q ss_pred EEeccChHHHHHHHHHHHHcC-CceEEEEecCCCCcchHHH
Q 045642 203 ILTLGHSKFVKEFLCAAKEKK-RSFEVFIADGAPKFEGHIL 242 (406)
Q Consensus 203 ILT~g~S~tV~~~L~~A~~~~-~~f~ViV~EsrP~~eG~~~ 242 (406)
|.+|.....+.++|....++. ..++|+|++..+..+....
T Consensus 5 i~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~ 45 (221)
T cd02522 5 IPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAI 45 (221)
T ss_pred EEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHH
Confidence 445677777777777766543 5688888887765444333
No 484
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=28.35 E-value=4.1e+02 Score=26.88 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=58.5
Q ss_pred cCcEEEeccChH----HHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEc-ch--HHHHHhhc--CC
Q 045642 199 QNEVILTLGHSK----FVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVIT-DS--AVFAMISR--VN 269 (406)
Q Consensus 199 ~g~~ILT~g~S~----tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~-Ds--av~~~m~~--vd 269 (406)
.|..|-.|+.|- .+..+++...+.+...+|+|+-+.| .|..+++.+...++.+.+.| |. .+..++++ -|
T Consensus 49 ~~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~--~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd 126 (425)
T PRK05749 49 KGPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTP--TGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPK 126 (425)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCc--cHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCC
Confidence 466788887763 4555555555556677777765543 35666666555578777776 32 44455543 57
Q ss_pred EEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecC
Q 045642 270 MVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVAS 309 (406)
Q Consensus 270 ~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ae 309 (406)
.|++.-.-+..| +...|+..++|++++..
T Consensus 127 ~v~~~~~~~~~~-----------~l~~~~~~~ip~vl~~~ 155 (425)
T PRK05749 127 LVIIMETELWPN-----------LIAELKRRGIPLVLANA 155 (425)
T ss_pred EEEEEecchhHH-----------HHHHHHHCCCCEEEEec
Confidence 665431111222 33457889999998743
No 485
>PRK15456 universal stress protein UspG; Provisional
Probab=28.27 E-value=1.8e+02 Score=24.52 Aligned_cols=36 Identities=17% Similarity=0.387 Sum_probs=24.4
Q ss_pred cCCEEEEcceeEeeCCCccc-ccchHHHHHHHhhCCCceEEe
Q 045642 267 RVNMVIVGVHAVMANGGVIA-PAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 267 ~vd~VllGAdav~~nG~vvn-k~GT~~lAl~Ak~~~vPv~V~ 307 (406)
++|++++|++. - | +.. -.||-.-. +.++..+||+|+
T Consensus 105 ~~DLIVmG~~g-~--~-~~~~llGS~a~~-v~~~a~~pVLvV 141 (142)
T PRK15456 105 GADVVVIGSRN-P--S-ISTHLLGSNASS-VIRHANLPVLVV 141 (142)
T ss_pred CCCEEEEcCCC-C--C-ccceecCccHHH-HHHcCCCCEEEe
Confidence 68999999986 2 2 222 35765444 467788999986
No 486
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=28.21 E-value=1.1e+02 Score=28.79 Aligned_cols=67 Identities=10% Similarity=0.173 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCce------EEEEecCCCCcch---HHHHHHHHhCCCceEEEcchHH-----HHHhhcCCEEEEcce
Q 045642 211 FVKEFLCAAKEKKRSF------EVFIADGAPKFEG---HILAKELDKKGLKAIVITDSAV-----FAMISRVNMVIVGVH 276 (406)
Q Consensus 211 tV~~~L~~A~~~~~~f------~ViV~EsrP~~eG---~~~a~~L~~~GI~vt~I~Dsav-----~~~m~~vd~VllGAd 276 (406)
+++.++..+.+. +.| -|.+.-+.|..+- ..+++.+.+.||.+.+-+...+ -.+++.+|.|++---
T Consensus 20 t~eel~~~~~~~-~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK 98 (213)
T PRK10076 20 TLDALEREVMKD-DIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLK 98 (213)
T ss_pred CHHHHHHHHHhh-hHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeec
Confidence 455555555422 111 3556666665554 3566677777888777666544 356778898888665
Q ss_pred eE
Q 045642 277 AV 278 (406)
Q Consensus 277 av 278 (406)
++
T Consensus 99 ~~ 100 (213)
T PRK10076 99 IM 100 (213)
T ss_pred cC
Confidence 54
No 487
>PRK14363 Maf-like protein; Provisional
Probab=28.18 E-value=3.4e+02 Score=25.34 Aligned_cols=91 Identities=18% Similarity=0.134 Sum_probs=54.3
Q ss_pred cChHHHHHHHHHHHHcCCceEEEEec--CCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeEe-eCCC
Q 045642 207 GHSKFVKEFLCAAKEKKRSFEVFIAD--GAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAVM-ANGG 283 (406)
Q Consensus 207 g~S~tV~~~L~~A~~~~~~f~ViV~E--srP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav~-~nG~ 283 (406)
|.|..=.++|..+ |-.|+|+-.+ -.+...=..++..|+..+- .++..-+..-+.+|||||.|. -||.
T Consensus 7 S~SprR~elL~~~---G~~f~v~~~~iDE~~~~~P~~~v~~lA~~KA-------~~v~~~~~~~~~lvI~aDTVV~~~g~ 76 (204)
T PRK14363 7 SSSPRRRQLMELL---GIEFEVEKPDVEEEFLESPEETVRELSLRKA-------EWVFKKRKEEEILVIGSDTVVVLDGN 76 (204)
T ss_pred CCCHHHHHHHHhC---CCCeEEEcCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHhccCCCCEEEEeCeEEEECCE
Confidence 5555555565554 5788877432 1222112466777765441 011111112478999999965 7899
Q ss_pred cccccchHHHH--HHHhhCCCceEEe
Q 045642 284 VIAPAGLHVLA--LAAKKHDVPFVVV 307 (406)
Q Consensus 284 vvnk~GT~~lA--l~Ak~~~vPv~V~ 307 (406)
++.|-.+..-| ++.+..|....|.
T Consensus 77 IlgKP~~~eeA~~~L~~lsG~~H~V~ 102 (204)
T PRK14363 77 ILGKPESLEEAKGMLKKLSGRWHVVY 102 (204)
T ss_pred EcCCCCCHHHHHHHHHHHCCCCcEEE
Confidence 99999998776 4666667664443
No 488
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=28.17 E-value=88 Score=28.59 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=17.4
Q ss_pred cceecCCCCccEEEeCCCCCCChhHHHHHHH
Q 045642 361 AFDYVPPELIRLFVTDIGGYSPSYIYRLIAD 391 (406)
Q Consensus 361 ~fD~tPp~lIt~iITE~G~~~Ps~v~~ll~e 391 (406)
-+.++||..=.+-=-|.|.-.+..+.+++..
T Consensus 143 G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~ 173 (182)
T PRK07313 143 GVQEIEPKEGLLACGDEGYGALADIETILET 173 (182)
T ss_pred CCEEECCCCCccccCCccCCCCCCHHHHHHH
Confidence 3666677644433345666666666555443
No 489
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=28.12 E-value=4.8e+02 Score=26.30 Aligned_cols=61 Identities=23% Similarity=0.408 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCceEEEcc-------hHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 240 HILAKELDKKGLKAIVITD-------SAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 240 ~~~a~~L~~~GI~vt~I~D-------sav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
..+-+++.+.|+.+.-..- .++..+..++|.+++-+|-... . |...+-..|...++|+|.-
T Consensus 178 eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~------s-~~~~l~~~a~~~kiPli~s 245 (322)
T COG2984 178 EELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIV------S-AIESLLQVANKAKIPLIAS 245 (322)
T ss_pred HHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHHH------H-HHHHHHHHHHHhCCCeecC
Confidence 3455555566766554432 2445555789999988875433 2 5566777899999999963
No 490
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.10 E-value=2.6e+02 Score=25.50 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=43.1
Q ss_pred CcEEEeccChHHHHHHHHHH-HHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc----hHHHHHhh-------
Q 045642 200 NEVILTLGHSKFVKEFLCAA-KEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD----SAVFAMIS------- 266 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A-~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D----sav~~~m~------- 266 (406)
+.++|+.|.|+.+-..|... .++| .+|+++...+ .....++.++...|-.++++ .| .++..++.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G--~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEG--VNVGLLARTE-ENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCH-HHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45777788777766666544 3344 5777775443 23345677777666666543 33 23333443
Q ss_pred cCCEEEEcc
Q 045642 267 RVNMVIVGV 275 (406)
Q Consensus 267 ~vd~VllGA 275 (406)
++|.||..|
T Consensus 84 ~id~vi~~a 92 (239)
T PRK07666 84 SIDILINNA 92 (239)
T ss_pred CccEEEEcC
Confidence 688888765
No 491
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=28.00 E-value=4.1e+02 Score=25.57 Aligned_cols=96 Identities=16% Similarity=0.155 Sum_probs=48.4
Q ss_pred EEEeccC-hHHHHHHHHHHHHcCCceEEEE-ec-CCCCcchHHHHHHHHhCCCceEEEcchHHHHHhhcCCEEEEcceeE
Q 045642 202 VILTLGH-SKFVKEFLCAAKEKKRSFEVFI-AD-GAPKFEGHILAKELDKKGLKAIVITDSAVFAMISRVNMVIVGVHAV 278 (406)
Q Consensus 202 ~ILT~g~-S~tV~~~L~~A~~~~~~f~ViV-~E-srP~~eG~~~a~~L~~~GI~vt~I~Dsav~~~m~~vd~VllGAdav 278 (406)
.|..+|. .+.=..+++.+. +...+++.. ++ ..|...|+..+.........+....|-... ...+|.||.-+
T Consensus 3 kV~IiGa~G~MG~~i~~~i~-~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l--~~~~DvVIdfT--- 76 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAAL-AAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAV--ETDPDVLIDFT--- 76 (266)
T ss_pred EEEEECCCCHHHHHHHHHHH-hCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHh--cCCCCEEEECC---
Confidence 4666774 333333344333 445666554 44 233333433222211111224444443222 34566665532
Q ss_pred eeCCCcccccchHHHHHHHhhCCCceEEecCC
Q 045642 279 MANGGVIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 279 ~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
.......++..|-.+|+|+++...-
T Consensus 77 -------~p~~~~~~~~~al~~g~~vVigttg 101 (266)
T TIGR00036 77 -------TPEGVLNHLKFALEHGVRLVVGTTG 101 (266)
T ss_pred -------ChHHHHHHHHHHHHCCCCEEEECCC
Confidence 4566677888888888888876643
No 492
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=27.99 E-value=2.9e+02 Score=26.70 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=58.8
Q ss_pred cCcEEEeccChHHHHHHHHHH-HHcCCceEEEEecCCCCcchHHHHHHHHhCCC--ceEEE-cc----hHHHHHhhcCCE
Q 045642 199 QNEVILTLGHSKFVKEFLCAA-KEKKRSFEVFIADGAPKFEGHILAKELDKKGL--KAIVI-TD----SAVFAMISRVNM 270 (406)
Q Consensus 199 ~g~~ILT~g~S~tV~~~L~~A-~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI--~vt~I-~D----sav~~~m~~vd~ 270 (406)
.|.+||+.|.++.+=..|... .+. ..+|+++-.++.... .+...+...+. .++++ .| .++..+++.+|.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 80 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLR--GYTVKATVRDLTDRK-KTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDA 80 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEECCCcchH-HHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCE
Confidence 356889989887776655443 333 456765533332211 11111111121 22322 22 345666778998
Q ss_pred EEEcceeEee---CC--Cc--ccccchHHHHHHHhhC-CCceEEecCC
Q 045642 271 VIVGVHAVMA---NG--GV--IAPAGLHVLALAAKKH-DVPFVVVAST 310 (406)
Q Consensus 271 VllGAdav~~---nG--~v--vnk~GT~~lAl~Ak~~-~vPv~V~aes 310 (406)
|+--|-.+.. +- .+ .|-.||..+.-+|+.+ +++-+|.+.|
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS 128 (322)
T PLN02986 81 VFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSS 128 (322)
T ss_pred EEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecc
Confidence 8877644321 11 11 3678999999888875 6654444443
No 493
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=27.97 E-value=2.5e+02 Score=30.37 Aligned_cols=73 Identities=18% Similarity=0.335 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcccCc-----EEEec--cChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch
Q 045642 187 EGIAEQAMELIHQNE-----VILTL--GHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS 259 (406)
Q Consensus 187 ~~I~~~a~~~I~~g~-----~ILT~--g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds 259 (406)
+.|.+.-.++..++. +||+. |+...|.+.|+.|.+..|+.++|.+|-.|.-=--+.-......+=.||+|.--
T Consensus 350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~D 429 (649)
T KOG0822|consen 350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSD 429 (649)
T ss_pred HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEecc
Confidence 344444445554433 45554 67889999999999889999999999999842211113334455677777543
No 494
>PRK00234 Maf-like protein; Reviewed
Probab=27.76 E-value=3.6e+02 Score=24.88 Aligned_cols=90 Identities=14% Similarity=0.174 Sum_probs=55.3
Q ss_pred ccChHHHHHHHHHHHHcCCceEEEEe---cCCCCcc-hHHHHHHHHhCCCceEEEcchHHHHHhh-cCCEEEEcceeEe-
Q 045642 206 LGHSKFVKEFLCAAKEKKRSFEVFIA---DGAPKFE-GHILAKELDKKGLKAIVITDSAVFAMIS-RVNMVIVGVHAVM- 279 (406)
Q Consensus 206 ~g~S~tV~~~L~~A~~~~~~f~ViV~---EsrP~~e-G~~~a~~L~~~GI~vt~I~Dsav~~~m~-~vd~VllGAdav~- 279 (406)
-|.|..=..+|+.+ |-.|+|+.. |+....+ -..++..|+..+- ..+.. .-+.+|+|||.|.
T Consensus 7 AS~SprR~elL~~~---gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~Ka----------~~v~~~~~~~~vI~aDTvV~ 73 (192)
T PRK00234 7 ASSSPYRRELLARL---RLPFTWASPDIDESHRPDESAEELVRRLARQKA----------EALAGSHPQHLIIGSDQVAV 73 (192)
T ss_pred ecCCHHHHHHHHHC---CCCcEEECCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHhhCCCCEEEEeCeEEE
Confidence 35565555566654 578987754 3222222 3577777776541 11111 1367999999965
Q ss_pred eCCCcccccchHHHH--HHHhhCCCceEEec
Q 045642 280 ANGGVIAPAGLHVLA--LAAKKHDVPFVVVA 308 (406)
Q Consensus 280 ~nG~vvnk~GT~~lA--l~Ak~~~vPv~V~a 308 (406)
-||.++.|-.+..-| ++-+..|.+.-|++
T Consensus 74 ~~g~Il~KP~~~~eA~~mL~~lsG~~h~V~T 104 (192)
T PRK00234 74 LGGQILGKPHTFERAREQLLAASGQSVTFLT 104 (192)
T ss_pred eCCEECCCCCCHHHHHHHHHHHCCCcEEEEE
Confidence 788888999998777 45566666655543
No 495
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.72 E-value=5.3e+02 Score=24.40 Aligned_cols=111 Identities=21% Similarity=0.351 Sum_probs=68.2
Q ss_pred hcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcch--HH------HHHhhc
Q 045642 196 LIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITDS--AV------FAMISR 267 (406)
Q Consensus 196 ~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~Ds--av------~~~m~~ 267 (406)
+...+-.|+.+-+|.....-+ +..+++++ +++ ..|...|...|+-|.+.|+++.--+-+ ++ -..+++
T Consensus 42 ~~~~~p~I~afWHg~l~l~p~--~~~~~~~~--~am-vS~s~DGEliA~~l~kfG~~~IRGSs~Kgg~~Alr~l~k~Lk~ 116 (214)
T COG2121 42 LANEKPGIVAFWHGQLALGPF--AFPKGKKI--YAM-VSPSRDGELIARLLEKFGLRVIRGSSNKGGISALRALLKALKQ 116 (214)
T ss_pred hhccCCeEEEEeccccccchh--hccCCCcE--EEE-EcCCcCHHHHHHHHHHcCceEEeccCCcchHHHHHHHHHHHhC
Confidence 444667899888775433322 22234553 333 345678999999999999988766432 11 222333
Q ss_pred CCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEecCCccccc
Q 045642 268 VNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVVASTHELCS 315 (406)
Q Consensus 268 vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~aes~K~~~ 315 (406)
-.-+.+-+|. .-|-+.++|.-.++| |+..|+|++.|.-.++.|-
T Consensus 117 G~~i~itpDg---PkGp~~~~~~Gii~L-A~~sg~pi~pv~~~~sr~~ 160 (214)
T COG2121 117 GKSIAITPDG---PKGPVHKIGDGIIAL-AQKSGVPIIPVGVATSRCW 160 (214)
T ss_pred CCcEEEcCCC---CCCCceeccchhhHh-hHhcCCCeEEEEEeeeeee
Confidence 3333333332 235677777766655 8899999999887766654
No 496
>PLN00198 anthocyanidin reductase; Provisional
Probab=27.58 E-value=2.8e+02 Score=27.10 Aligned_cols=109 Identities=19% Similarity=0.249 Sum_probs=58.2
Q ss_pred CcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchH-HHHHHHHhCCCceEEE-c---c-hHHHHHhhcCCEEEE
Q 045642 200 NEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGH-ILAKELDKKGLKAIVI-T---D-SAVFAMISRVNMVIV 273 (406)
Q Consensus 200 g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~-~~a~~L~~~GI~vt~I-~---D-sav~~~m~~vd~Vll 273 (406)
+.+||..|.++.+=..|.....+ +..+|+++.-.+...+. .....|...+ ++.++ . | ..+..+++++|.|+-
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~~d~vih 86 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQ-KGYAVNTTVRDPENQKKIAHLRALQELG-DLKIFGADLTDEESFEAPIAGCDLVFH 86 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHhcCCCC-ceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence 66788889888777766555422 23567655433322221 1112232222 23322 2 2 345677788999885
Q ss_pred cceeE-eeCCC------cccccchHHHHHHHhhC-CCceEEecCC
Q 045642 274 GVHAV-MANGG------VIAPAGLHVLALAAKKH-DVPFVVVAST 310 (406)
Q Consensus 274 GAdav-~~nG~------vvnk~GT~~lAl~Ak~~-~vPv~V~aes 310 (406)
-|--. ..+.. -.|-.|+..+.-+|+.. +++-+|.+.|
T Consensus 87 ~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS 131 (338)
T PLN00198 87 VATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSS 131 (338)
T ss_pred eCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeec
Confidence 55321 11111 13678888888877665 4655555444
No 497
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=27.56 E-value=4.3e+02 Score=25.06 Aligned_cols=46 Identities=15% Similarity=0.048 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHH----cCCceEEEEecCCCCcchHHHHHHHHhCCCceEEEcc
Q 045642 210 KFVKEFLCAAKE----KKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVITD 258 (406)
Q Consensus 210 ~tV~~~L~~A~~----~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I~D 258 (406)
.+.+..+..|.+ -+.++-|=|.-+ .+|...++.|.+.||+|....-
T Consensus 64 ~~~~~mi~eA~~l~~~~~~nv~VKIP~T---~~Gl~Ai~~L~~~Gi~vn~T~i 113 (222)
T PRK12656 64 QDYEGILKDAHEIRRQCGDDVYIKVPVT---PAGLAAIKTLKAEGYHITATAI 113 (222)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCC---HHHHHHHHHHHHCCCceEEeee
Confidence 345566655543 244444433333 3699999999999998775443
No 498
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=27.49 E-value=7.4e+02 Score=26.01 Aligned_cols=119 Identities=15% Similarity=0.253 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcEEEeccChHHHHHHHHHHHHcCCceEEEEecCCC-CcchHHHHHHHHh-CCCceEE
Q 045642 178 LIEDINTCREGIAEQAMELIHQNEVILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAP-KFEGHILAKELDK-KGLKAIV 255 (406)
Q Consensus 178 ~~~e~~~~~~~I~~~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP-~~eG~~~a~~L~~-~GI~vt~ 255 (406)
++++.....+.+.+.+..++ .|.++..+|.+..+..+-.-..+-|-...+.++-+.+ ........++|.. .|.++.+
T Consensus 288 i~~er~~~~d~~~d~~~~~l-~Gkrv~i~g~~~~~~~l~~fl~Elg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v 366 (457)
T TIGR02932 288 LVRERGIALDALADLAHMFF-ANKKVAIFGHPDLVIGLAEFCLEVELEPVLLLLGDDNSKYKKDPRIEELKNKANFDIEV 366 (457)
T ss_pred HHHHHHHHHHHHHHhHHHHH-cCCeeEEEcCHHHHHHHHHHHHHCCCeEEEEEECCCCccccchHHHHHHHhhcCCCceE
Confidence 33444444455554444444 6888888898887777777666667777777665544 3333333344433 3444444
Q ss_pred EcchHHHHHhhcCCEEEEcceeEeeCCCcccccchHHHHHHHhhCCCceEEe
Q 045642 256 ITDSAVFAMISRVNMVIVGVHAVMANGGVIAPAGLHVLALAAKKHDVPFVVV 307 (406)
Q Consensus 256 I~Dsav~~~m~~vd~VllGAdav~~nG~vvnk~GT~~lAl~Ak~~~vPv~V~ 307 (406)
+.+.-..-+...+-. -.++|-++.+. .-..+|+..++|++.+
T Consensus 367 ~~~~d~~el~~~l~~-~~~~dllig~s---------~~~~~A~klgip~~~~ 408 (457)
T TIGR02932 367 VWNADLWELEKRIKA-KLDIDLIMGHS---------KGRYVAIDANIPMVRV 408 (457)
T ss_pred EeCCCHHHHHHHHhh-cCCCCEEEECC---------chHHHHHHcCCCEEEe
Confidence 444333222211000 02344444431 1245688899999866
No 499
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=27.47 E-value=3.1e+02 Score=23.73 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccCcEEEeccChHHHHHHHHHHHH-----cCCc-eEEEEecC-CCCcch
Q 045642 168 KSELIKAVNELIEDINTCREGIAE-QAMELIHQNEVILTLGHSKFVKEFLCAAKE-----KKRS-FEVFIADG-APKFEG 239 (406)
Q Consensus 168 k~~l~~~i~~~~~e~~~~~~~I~~-~a~~~I~~g~~ILT~g~S~tV~~~L~~A~~-----~~~~-f~ViV~Es-rP~~eG 239 (406)
-..+-+.|+++++++....+-.-+ ...+ ..|..|-.+.+-+-|.+.|..+.+ .||= .++=-..+ +|..+-
T Consensus 6 v~~~~~~i~~~i~~l~S~~d~~~~~~~~e--~G~~wvWi~DN~~~~vRALl~~grV~v~~eGRYLl~l~~~~s~~plr~k 83 (132)
T PF14468_consen 6 VKEYADRINEYISELYSKKDFLNDDYDRE--FGNAWVWIHDNQSEVVRALLQAGRVKVNKEGRYLLDLDLFDSDWPLRKK 83 (132)
T ss_pred HHHHHHHHHHHHHHHhccchhhcccchhh--cCceEEEEecCcCHHHHHHHHcCceeeccCceeeeecccccCCCchHHH
Confidence 345666777777777655442111 1111 134567777777777777777652 2221 22222344 788888
Q ss_pred HHHHHHHHh-----CCCceEEEc
Q 045642 240 HILAKELDK-----KGLKAIVIT 257 (406)
Q Consensus 240 ~~~a~~L~~-----~GI~vt~I~ 257 (406)
..||+.+++ .||++.+.+
T Consensus 84 E~~ak~vA~~L~~rF~vea~yfS 106 (132)
T PF14468_consen 84 EAMAKHVAGWLRHRFGVEAGYFS 106 (132)
T ss_pred HHHHHHHHHHHHHHhCcceeEEE
Confidence 889998885 577776653
No 500
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=27.28 E-value=2e+02 Score=27.45 Aligned_cols=105 Identities=13% Similarity=0.092 Sum_probs=52.7
Q ss_pred EEeccChHHHHHHHHHHHHcCCceEEEEecCCCCcchHHHHHHHHhCCCceEEE-cc----hHHHHHhh--cCCEEEEcc
Q 045642 203 ILTLGHSKFVKEFLCAAKEKKRSFEVFIADGAPKFEGHILAKELDKKGLKAIVI-TD----SAVFAMIS--RVNMVIVGV 275 (406)
Q Consensus 203 ILT~g~S~tV~~~L~~A~~~~~~f~ViV~EsrP~~eG~~~a~~L~~~GI~vt~I-~D----sav~~~m~--~vd~VllGA 275 (406)
||..|.++.+-..|..... ...++|+++. ++..........+...+ .+.++ .| .++..+++ ++|.|+-.|
T Consensus 2 vlV~GatG~iG~~l~~~l~-~~g~~V~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~a 78 (328)
T TIGR01179 2 ILVTGGAGYIGSHTVRQLL-ESGHEVVVLD-NLSNGSPEALKRGERIT-RVTFVEGDLRDRELLDRLFEEHKIDAVIHFA 78 (328)
T ss_pred EEEeCCCCHHHHHHHHHHH-hCCCeEEEEe-CCCccchhhhhhhcccc-ceEEEECCCCCHHHHHHHHHhCCCcEEEECc
Confidence 5666776666665555442 2345677663 22111111112222211 23222 22 45555665 578777655
Q ss_pred eeEeeCC--------CcccccchHHHHHHHhhCCCceEEecCC
Q 045642 276 HAVMANG--------GVIAPAGLHVLALAAKKHDVPFVVVAST 310 (406)
Q Consensus 276 dav~~nG--------~vvnk~GT~~lAl~Ak~~~vPv~V~aes 310 (406)
-...... --.|-.|+..++-+|+.++++.+|.+.+
T Consensus 79 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss 121 (328)
T TIGR01179 79 GLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSS 121 (328)
T ss_pred cccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecc
Confidence 3211100 1235568888888888888776666554
Done!