Query 045643
Match_columns 179
No_of_seqs 114 out of 1110
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071 Fatty acyl-CoA elongas 100.0 4.7E-46 1E-50 318.6 8.1 150 29-178 94-263 (274)
2 PF01151 ELO: GNS1/SUR4 family 100.0 1.3E-42 2.8E-47 293.6 12.0 156 18-178 63-247 (250)
3 PTZ00251 fatty acid elongase; 100.0 1E-42 2.3E-47 298.5 10.0 152 22-178 91-267 (272)
4 KOG3072 Long chain fatty acid 100.0 2.9E-36 6.2E-41 257.7 1.2 154 17-176 95-268 (282)
5 KOG3894 SNARE protein Syntaxin 17.7 1.2E+02 0.0025 27.2 2.7 24 148-171 293-316 (316)
6 PF12643 MazG-like: MazG-like 17.5 1.6E+02 0.0035 21.6 3.1 25 103-127 35-59 (98)
7 PHA02650 hypothetical protein; 16.8 4.1E+02 0.0088 19.1 4.8 33 144-176 44-76 (81)
8 PHA01971 hypothetical protein 15.8 1.4E+02 0.0031 23.1 2.5 48 13-60 65-112 (123)
9 PF07851 TMPIT: TMPIT-like pro 15.0 4.6E+02 0.01 23.6 5.9 56 72-127 177-245 (330)
10 PF11119 DUF2633: Protein of u 13.8 1.8E+02 0.004 19.7 2.3 13 156-168 13-25 (59)
No 1
>KOG3071 consensus Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme [Lipid transport and metabolism]
Probab=100.00 E-value=4.7e-46 Score=318.64 Aligned_cols=150 Identities=39% Similarity=0.661 Sum_probs=127.7
Q ss_pred CcccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEeeeecchhhhhhhhhhcccc-chhhHHHHHH
Q 045643 29 PLHPLFPPTISPSGPLFFHAYIFYLSKIHEFLDTLLIILSNSIQRLTFLHVYHHATVVVMCYLWLQTKQ-SLFPIALVTN 107 (179)
Q Consensus 29 ~~~~C~p~~~~~~~~~~~~~~lfylSK~~EllDTvf~VLRKK~~qvsFLHvyHH~~~~~~~w~~~~~~~-~~~~~~~~~N 107 (179)
.+..|.|.|.+++.++.+|+|+||+||++||+||+|||||||+||+||||||||++|+..+|+++.+.+ +.++.++.+|
T Consensus 94 ~c~~~~~~~~~~~~r~~~~~~~yylsKflel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~~~lN 173 (274)
T KOG3071|consen 94 RCQPCFPSDHEPKLRERFWSYLYYLSKFLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFAILLN 173 (274)
T ss_pred EEEecCCCCCCcceeehHHHHHHHHHHHHHHHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeeeeehh
Confidence 355666666777889999999999999999999999999999999999999999999999999999877 6667788999
Q ss_pred HHHHHHHHHHHHHHhhCCcc------------ceeehheehhhhh-----cCCCCCchHH-HHHH-HHHHHHHHHHHHHH
Q 045643 108 ASVHVIMYGYYLLCVMGLLP------------NFVVSVLMLYYNF-----TGFGCSGILG-QCFN-VVFNASLLTLFVNF 168 (179)
Q Consensus 108 s~VHviMY~YY~lsa~g~~~------------q~~v~~~~~~~~~-----~~~~C~~~~~-~~~~-~~~~~s~l~LF~~F 168 (179)
++||++||+||+++|+|++. .|++|++++..|. ..++|+.+++ ++++ .+.+++|++||.||
T Consensus 174 s~VHviMY~YYflsa~G~~v~~~lWWkky~t~vQlvqf~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~LF~nF 253 (274)
T KOG3071|consen 174 SFVHVIMYGYYFLSAFGPRVQWYLWWKKYITIVQLVQFLILFVHTLYVHLFKPGCCFGIGAWAFNGSVINVSFLLLFSNF 253 (274)
T ss_pred hhHHHHHHHHHHHHhhCcCccccchHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999995 2455665554443 2458888776 6665 45689999999999
Q ss_pred hHhhcccCCC
Q 045643 169 HSEDYAKKKQ 178 (179)
Q Consensus 169 y~ksY~~k~~ 178 (179)
|+|+|+|+++
T Consensus 254 Y~~tY~k~~~ 263 (274)
T KOG3071|consen 254 YIKTYKKPKK 263 (274)
T ss_pred HHHHhccccc
Confidence 9999998643
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.3e-42 Score=293.58 Aligned_cols=156 Identities=33% Similarity=0.510 Sum_probs=126.0
Q ss_pred eecCCCCCCCCCcccccCC----CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEeeeecchhhhhhhhhh
Q 045643 18 HSLHHPPFTPPPLHPLFPP----TISPSGPLFFHAYIFYLSKIHEFLDTLLIILSNSIQRLTFLHVYHHATVVVMCYLWL 93 (179)
Q Consensus 18 ~~~~~~~~~~~~~~~C~p~----~~~~~~~~~~~~~lfylSK~~EllDTvf~VLRKK~~qvsFLHvyHH~~~~~~~w~~~ 93 (179)
..+.++|++ +..|++. ++..++++++|.|+|++||++|++||+|+|||| ||++|||||||+++++.+|.++
T Consensus 63 ~~~~~~g~~---~~~C~~~~~~~~~~~~~~~~~~~~~fylSK~~EllDTvflvLrk--K~lsfLHvYHH~~~~~~~w~~~ 137 (250)
T PF01151_consen 63 SSLFKGGLY---SSFCQPVDFDPDSYSSGRVGFWYWLFYLSKYYELLDTVFLVLRK--KQLSFLHVYHHASTLLYCWISY 137 (250)
T ss_pred HHHhhcccc---cccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHhhhhhhhhhhhhee
Confidence 334456777 8899533 344456889999999999999999999999999 5999999999999999999999
Q ss_pred ccc-cchhhHHHHHHHHHHHHHHHHHHHHhhCCcc-----------ceeehheehhhhh----c-----CCCC---CchH
Q 045643 94 QTK-QSLFPIALVTNASVHVIMYGYYLLCVMGLLP-----------NFVVSVLMLYYNF----T-----GFGC---SGIL 149 (179)
Q Consensus 94 ~~~-~~~~~~~~~~Ns~VHviMY~YY~lsa~g~~~-----------q~~v~~~~~~~~~----~-----~~~C---~~~~ 149 (179)
..+ .+...+++++|++||++||+||+++|+|.|. .|++||++...+. . ..+| +++.
T Consensus 138 ~~~~~~~~~~~~~~N~~VH~iMY~YY~l~a~g~~~~~~~~k~~IT~~Qi~QF~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 217 (250)
T PF01151_consen 138 KYGPGGQIWFIAALNSFVHVIMYSYYFLSALGIRKVPRWWKKYITSLQIVQFVIGIVHTVYALYYYFFPGGDCDTSGYPK 217 (250)
T ss_pred eeccccchhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHhHHhhhhhHHHHHHHHHHhheeccCCCCCCcchhHH
Confidence 888 4555567799999999999999999999972 5677776544332 1 2589 5554
Q ss_pred H-HHHHHHHHHHHHHHHHHHhHhhcccCCC
Q 045643 150 G-QCFNVVFNASLLTLFVNFHSEDYAKKKQ 178 (179)
Q Consensus 150 ~-~~~~~~~~~s~l~LF~~Fy~ksY~~k~~ 178 (179)
. ..++.++++++++||.|||+|+|.+|||
T Consensus 218 ~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~ 247 (250)
T PF01151_consen 218 FNAILGLVYYVSYLYLFINFYIKSYIKKKK 247 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 4 4456677899999999999999998865
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=1e-42 Score=298.52 Aligned_cols=152 Identities=22% Similarity=0.307 Sum_probs=122.2
Q ss_pred CCCCCCCCcccccCCCCC-CCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEeeeecchhhhhhhhhhccccchh
Q 045643 22 HPPFTPPPLHPLFPPTIS-PSGPLFFHAYIFYLSKIHEFLDTLLIILSNSIQRLTFLHVYHHATVVVMCYLWLQTKQSLF 100 (179)
Q Consensus 22 ~~~~~~~~~~~C~p~~~~-~~~~~~~~~~lfylSK~~EllDTvf~VLRKK~~qvsFLHvyHH~~~~~~~w~~~~~~~~~~ 100 (179)
..|++ +..|++.+++ .++++++|+|+|++||++|++||+|+|||| ||+||||||||++|++.+|..+..+.+..
T Consensus 91 ~~g~~---~~~C~~~~~~~~~~~~~~~~~~f~lsK~~El~DTvF~VLRK--KqvsFLHvYHH~~~~~~~w~~~~~g~~~~ 165 (272)
T PTZ00251 91 KYGLH---DTLCTFREDEFYTGKVGVAMGLFSISKVPEFGDTFFLIMGG--KKLPFLSWFHHVTIFLYAWMSYQQGSSIW 165 (272)
T ss_pred hcCcc---eeeecCCCCcchhHHHHHHHHHHHHHHHHHHHhHhhhhhcC--CCchHHHHHHHHHHHHHHHHHHhCCCcHH
Confidence 46666 7789765443 346889999999999999999999999999 59999999999999999999876666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCcc-----------ceeehheehhhhhc-----------CCCCCchH-HHHH-HHH
Q 045643 101 PIALVTNASVHVIMYGYYLLCVMGLLP-----------NFVVSVLMLYYNFT-----------GFGCSGIL-GQCF-NVV 156 (179)
Q Consensus 101 ~~~~~~Ns~VHviMY~YY~lsa~g~~~-----------q~~v~~~~~~~~~~-----------~~~C~~~~-~~~~-~~~ 156 (179)
.+++++|++||++||+||+++|+|+++ .|++||++...+.. ..+|+++. .... ..+
T Consensus 166 ~~~~~lNs~VH~iMY~YY~lsa~g~~~~~~~~kk~IT~lQi~Qfv~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 245 (272)
T PTZ00251 166 ICAAAMNYFVHSIMYFYFALSEAGFKKLVKPFAMYITLLQITQMVGGLFVSGYVIVQKLTKGDPKGCSGTTMATARGQLM 245 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHH
Confidence 667899999999999999999999861 46677665433311 24698765 3333 345
Q ss_pred HHHHHHHHHHHHhHhhcccCCC
Q 045643 157 FNASLLTLFVNFHSEDYAKKKQ 178 (179)
Q Consensus 157 ~~~s~l~LF~~Fy~ksY~~k~~ 178 (179)
+++++++||+|||+|+|.+|||
T Consensus 246 ~~~s~l~LF~~Fy~~~Y~~~~~ 267 (272)
T PTZ00251 246 IYIFNFYLFSEMFVKGYVLPRK 267 (272)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 6899999999999999998764
No 4
>KOG3072 consensus Long chain fatty acid elongase [Lipid transport and metabolism]
Probab=100.00 E-value=2.9e-36 Score=257.71 Aligned_cols=154 Identities=27% Similarity=0.380 Sum_probs=127.2
Q ss_pred eeecCCCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEeeeecchhhhhhhhhhccc
Q 045643 17 LHSLHHPPFTPPPLHPLFPPTISPSGPLFFHAYIFYLSKIHEFLDTLLIILSNSIQRLTFLHVYHHATVVVMCYLWLQTK 96 (179)
Q Consensus 17 ~~~~~~~~~~~~~~~~C~p~~~~~~~~~~~~~~lfylSK~~EllDTvf~VLRKK~~qvsFLHvyHH~~~~~~~w~~~~~~ 96 (179)
++.+++.|+. ...|+..+... +..++|+|+|.+||..|++||+|+|||| ||++|||||||+++++++|..+...
T Consensus 95 ~~~~~~~Gf~---~s~C~~~~~~~-~~~~fW~~~fvlSK~~ElgDT~FiVLRK--rPliFlHWYHHi~~~iy~~~~y~~~ 168 (282)
T KOG3072|consen 95 LAVFRAAGFK---GSYCDANNLGL-SVSGFWSWLFVLSKAPELGDTIFIVLRK--RPLIFLHWYHHILVLIYAWHSYIEK 168 (282)
T ss_pred HHHHHhhhhh---eeeeecccCCc-chHHHHHHHHHHHhhhhhhceeEEEecc--CccEEEechhhheeeeeeeeecccC
Confidence 4566778877 78998765333 6889999999999999999999999999 9999999999999999999988888
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhCCcc----------ceeehheehhh--------hhc-CCCCCch-HHHHHHHH
Q 045643 97 QSLFPIALVTNASVHVIMYGYYLLCVMGLLP----------NFVVSVLMLYY--------NFT-GFGCSGI-LGQCFNVV 156 (179)
Q Consensus 97 ~~~~~~~~~~Ns~VHviMY~YY~lsa~g~~~----------q~~v~~~~~~~--------~~~-~~~C~~~-~~~~~~~~ 156 (179)
.+...+++.+|.+||.+||+||+++|+|.|+ .|++|+.+... ... +..|+.. +...++++
T Consensus 169 ~a~~rw~i~mNy~vHa~MY~YY~lrsl~ir~Pk~vam~iTtlQi~Qm~i~~~i~~~v~~~~~~~~~~c~~s~~~~~l~~~ 248 (282)
T KOG3072|consen 169 VAWGRWFIWMNYLVHAFMYSYYALRSLGIRLPKSVAMAITTLQIVQMVIGCYIGTHVYYVKHTHQLLCQQSYKNLSLCFL 248 (282)
T ss_pred CcCceEEEEEehhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHheeeEEEEEEecCCeeeeeeccchhhHHH
Confidence 8888888999999999999999999999994 44555533211 111 1228764 44556778
Q ss_pred HHHHHHHHHHHHhHhhcccC
Q 045643 157 FNASLLTLFVNFHSEDYAKK 176 (179)
Q Consensus 157 ~~~s~l~LF~~Fy~ksY~~k 176 (179)
++.++++||+|||.++|++|
T Consensus 249 my~syfvLf~~Ff~~aYi~~ 268 (282)
T KOG3072|consen 249 MYISYFVLFANFFYQAYIKK 268 (282)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999986
No 5
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=17.74 E-value=1.2e+02 Score=27.22 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHh
Q 045643 148 ILGQCFNVVFNASLLTLFVNFHSE 171 (179)
Q Consensus 148 ~~~~~~~~~~~~s~l~LF~~Fy~k 171 (179)
.+.|.+.+++..+|..||.+.|.+
T Consensus 293 ~r~~~lf~llvlsf~lLFldwy~~ 316 (316)
T KOG3894|consen 293 LRVFLLFFLLVLSFSLLFLDWYYK 316 (316)
T ss_pred chhHHHHHHHHHHHHHHHHhhcCC
Confidence 345666667788999999999864
No 6
>PF12643 MazG-like: MazG-like family
Probab=17.51 E-value=1.6e+02 Score=21.61 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcc
Q 045643 103 ALVTNASVHVIMYGYYLLCVMGLLP 127 (179)
Q Consensus 103 ~~~~Ns~VHviMY~YY~lsa~g~~~ 127 (179)
-.+.+.+..+++|+|-+-..+|..+
T Consensus 35 e~i~deLAdvii~~ylLa~rLGid~ 59 (98)
T PF12643_consen 35 EAIKDELADVIIYCYLLADRLGIDF 59 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3589999999999999999999984
No 7
>PHA02650 hypothetical protein; Provisional
Probab=16.78 E-value=4.1e+02 Score=19.15 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=20.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhHhhcccC
Q 045643 144 GCSGILGQCFNVVFNASLLTLFVNFHSEDYAKK 176 (179)
Q Consensus 144 ~C~~~~~~~~~~~~~~s~l~LF~~Fy~ksY~~k 176 (179)
.|+..+...+..+..+.++++|.-+|.|.+.+.
T Consensus 44 ~~~~~~~~~ii~i~~v~i~~l~~flYLK~~~r~ 76 (81)
T PHA02650 44 VSWFNGQNFIFLIFSLIIVALFSFFVFKGYTRN 76 (81)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344333333333445677888888998888764
No 8
>PHA01971 hypothetical protein
Probab=15.81 E-value=1.4e+02 Score=23.11 Aligned_cols=48 Identities=13% Similarity=-0.175 Sum_probs=31.2
Q ss_pred cccceeecCCCCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHH
Q 045643 13 HGRWLHSLHHPPFTPPPLHPLFPPTISPSGPLFFHAYIFYLSKIHEFL 60 (179)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~C~p~~~~~~~~~~~~~~lfylSK~~Ell 60 (179)
..--..-..+.||......-|-.+++.....-..+++=-.+.|++||.
T Consensus 65 ~~TvCvl~L~NGF~VtG~SAcvdp~nfd~eiG~kiA~~nA~~kiW~Le 112 (123)
T PHA01971 65 LLTFCVLVLRNGFTVTGESACASPENFDAEIGRKIARENAVNKIWMLE 112 (123)
T ss_pred ceEEEEEEeCCCcEEEeeecccChHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 333334444889998888889766543332334556677889999875
No 9
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=14.97 E-value=4.6e+02 Score=23.57 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=31.9
Q ss_pred CcceEEeeeecchhhhhhhhhh--ccccchh------hHHHHHHHHHHHHHHHH-----HHHHhhCCcc
Q 045643 72 QRLTFLHVYHHATVVVMCYLWL--QTKQSLF------PIALVTNASVHVIMYGY-----YLLCVMGLLP 127 (179)
Q Consensus 72 ~qvsFLHvyHH~~~~~~~w~~~--~~~~~~~------~~~~~~Ns~VHviMY~Y-----Y~lsa~g~~~ 127 (179)
+++--==++||-....++-+.+ +.+...+ ..+.+.=++|+.+=|-| |-+.|+|.+.
T Consensus 177 S~Ik~WW~~HHy~s~~~s~v~Ltwp~~~~~~~fr~~fl~f~~~~~~vq~lQ~~YQ~~~Ly~l~AlG~~~ 245 (330)
T PF07851_consen 177 SRIKGWWVFHHYISTFLSGVMLTWPDGEAYQKFRPQFLLFSLYQSVVQFLQYRYQRGCLYRLRALGKRH 245 (330)
T ss_pred CcchHHHHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCc
Confidence 4444445689955444332222 2222221 12556667777777766 7888999873
No 10
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=13.84 E-value=1.8e+02 Score=19.70 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHH
Q 045643 156 VFNASLLTLFVNF 168 (179)
Q Consensus 156 ~~~~s~l~LF~~F 168 (179)
++.+||++||++|
T Consensus 13 VLLISfiIlfgRl 25 (59)
T PF11119_consen 13 VLLISFIILFGRL 25 (59)
T ss_pred HHHHHHHHHHHHH
Confidence 4457888888855
Done!