Query 045643
Match_columns 179
No_of_seqs 114 out of 1110
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wb6_A AFV1-102; archaeal viru 10.7 1.2E+02 0.004 21.8 1.7 14 56-69 40-53 (130)
2 2kn0_A FN14; tweak, TNF recept 9.5 1.1E+02 0.0037 20.1 1.1 17 7-23 38-54 (66)
3 2koe_A Human cannabinoid recep 7.5 39 0.0013 18.7 -1.6 15 103-117 9-23 (40)
4 4dkl_A MU-type opioid receptor 6.8 2.8E+02 0.0094 22.5 2.7 16 103-118 427-442 (464)
5 3r8n_P 30S ribosomal protein S 6.7 3.1E+02 0.011 18.6 2.5 54 8-70 24-78 (82)
6 3bso_A RNA dependent RNA polym 6.7 3.5E+02 0.012 23.9 3.5 35 93-127 295-329 (510)
7 3vw7_A Proteinase-activated re 6.3 2.2E+02 0.0076 23.3 1.9 16 103-118 436-451 (484)
8 3eml_A Human adenosine A2A rec 6.2 3.1E+02 0.01 22.4 2.7 17 102-118 437-453 (488)
9 1xr7_A Genome polyprotein; RNA 6.2 2.8E+02 0.0096 24.2 2.6 24 94-117 283-306 (460)
10 2ks9_A Substance-P receptor; w 6.1 3.2E+02 0.011 21.4 2.7 16 103-118 293-308 (364)
No 1
>2wb6_A AFV1-102; archaeal virus, viral protein; 1.95A {Acidianus filamentous virus 1}
Probab=10.70 E-value=1.2e+02 Score=21.75 Aligned_cols=14 Identities=29% Similarity=0.895 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhc
Q 045643 56 IHEFLDTLLIILSN 69 (179)
Q Consensus 56 ~~EllDTvf~VLRK 69 (179)
..|++|..|+|..|
T Consensus 40 msefldsmflviek 53 (130)
T 2wb6_A 40 MSEFLDSMFLVIEK 53 (130)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 46999999999988
No 2
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=9.49 E-value=1.1e+02 Score=20.10 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=9.2
Q ss_pred CCCCcccccceeecCCC
Q 045643 7 SSSLPRHGRWLHSLHHP 23 (179)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (179)
|+.-|-++||+|...+.
T Consensus 38 s~t~p~~fpllWp~l~~ 54 (66)
T 2kn0_A 38 SKTEQPDFPWIWVEQKL 54 (66)
T ss_dssp CCSCSCCCCSSCC----
T ss_pred CCCCCCCccchhhhhcc
Confidence 34444679999987543
No 3
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=7.48 E-value=39 Score=18.70 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHH
Q 045643 103 ALVTNASVHVIMYGY 117 (179)
Q Consensus 103 ~~~~Ns~VHviMY~Y 117 (179)
...+|+.+.|+.|+.
T Consensus 9 l~~~ns~lNPiIY~~ 23 (40)
T 2koe_A 9 LCLLNSTVNPIIYAL 23 (40)
T ss_dssp HHHHHHHSSTTTTBT
T ss_pred HHHHHHHHHHHHHHH
Confidence 457889888888864
No 4
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=6.78 E-value=2.8e+02 Score=22.48 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 045643 103 ALVTNASVHVIMYGYY 118 (179)
Q Consensus 103 ~~~~Ns~VHviMY~YY 118 (179)
.+.+|++++++.|++.
T Consensus 427 L~~~ns~~NPiIY~~~ 442 (464)
T 4dkl_A 427 LGYTNSCLNPVLYAFL 442 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHh
Confidence 5679999999999864
No 5
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=6.72 E-value=3.1e+02 Score=18.63 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=33.0
Q ss_pred CCCcccccceeecCCCCCC-CCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 045643 8 SSLPRHGRWLHSLHHPPFT-PPPLHPLFPPTISPSGPLFFHAYIFYLSKIHEFLDTLLIILSNS 70 (179)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~-~~~~~~C~p~~~~~~~~~~~~~~lfylSK~~EllDTvf~VLRKK 70 (179)
|.-|||+|.+..+ |+| |. -.|.+..-.-.... -.+.|++=-+.-|||-=+|+|-
T Consensus 24 sr~~RdGr~IE~l---G~YnP~----~~~~~~~v~l~~er--i~~Wl~~GAqptdtV~~Ll~~a 78 (82)
T 3r8n_P 24 SRNARNGRFIERV---GFFNPI----ASEKEEGTRLDLDR--IAHWVGQGATISDRVAALIKEV 78 (82)
T ss_dssp TTSCTTSCEEEEE---EEECTT----CCSSSCCCCCCHHH--HHHHHHHTCEECHHHHHHHTTS
T ss_pred cCCCCCCCceeee---eEEcCC----CCCCcceEEEcHHH--HHHHHHCCCccCHHHHHHHHhh
Confidence 4569999999998 667 21 11110010111111 2355889999999999988873
No 6
>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral replication, antiviral E inhibitor, helicase, hydrolase; HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A* 3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A
Probab=6.71 E-value=3.5e+02 Score=23.87 Aligned_cols=35 Identities=23% Similarity=0.079 Sum_probs=23.7
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHHhhCCcc
Q 045643 93 LQTKQSLFPIALVTNASVHVIMYGYYLLCVMGLLP 127 (179)
Q Consensus 93 ~~~~~~~~~~~~~~Ns~VHviMY~YY~lsa~g~~~ 127 (179)
..+.+|.+..-.+.||++|.++-.|=+....|..+
T Consensus 295 ~~G~PSG~p~Tsi~NSi~N~i~~~~a~~~~~~~~~ 329 (510)
T 3bso_A 295 NEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSP 329 (510)
T ss_dssp CSSCCTTSTTHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred eCcccCCCCeeeccchHHHHHHHHHHHHHhcCCCH
Confidence 34556777777899999999875554444356654
No 7
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=6.34 E-value=2.2e+02 Score=23.34 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 045643 103 ALVTNASVHVIMYGYY 118 (179)
Q Consensus 103 ~~~~Ns~VHviMY~YY 118 (179)
.+.+|++++++.|++.
T Consensus 436 L~~~ns~iNPiIY~~~ 451 (484)
T 3vw7_A 436 VSSISCCIDPLIYYYA 451 (484)
T ss_dssp HHTTHHHHHHHHHHHT
T ss_pred HHHhccccchHHHHHh
Confidence 4569999999999864
No 8
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=6.22 E-value=3.1e+02 Score=22.38 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045643 102 IALVTNASVHVIMYGYY 118 (179)
Q Consensus 102 ~~~~~Ns~VHviMY~YY 118 (179)
+.+.+|++++++.|.+.
T Consensus 437 ~l~~~ns~~NPiIY~~~ 453 (488)
T 3eml_A 437 VLSHTNSVVNPFIYAYR 453 (488)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhchhhhhhc
Confidence 36679999999999865
No 9
>1xr7_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.30A {Human rhinovirus 16} SCOP: e.8.1.4 PDB: 1tp7_A* 1xr6_A
Probab=6.21 E-value=2.8e+02 Score=24.19 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=18.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHH
Q 045643 94 QTKQSLFPIALVTNASVHVIMYGY 117 (179)
Q Consensus 94 ~~~~~~~~~~~~~Ns~VHviMY~Y 117 (179)
.+.+|.+..-.+.||++|.++..|
T Consensus 283 ~G~PSG~p~Tsi~NSl~n~i~~~~ 306 (460)
T 1xr7_A 283 GGVPSGCSGTSIFNSMINNIIIRT 306 (460)
T ss_dssp SSCCTTSTTHHHHHHHHHHHHHHH
T ss_pred CCccCCCCccccchhHHHHHHHHH
Confidence 345677777789999999987654
No 10
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=6.15 E-value=3.2e+02 Score=21.36 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 045643 103 ALVTNASVHVIMYGYY 118 (179)
Q Consensus 103 ~~~~Ns~VHviMY~YY 118 (179)
...+|+++|++.|.+.
T Consensus 293 l~~~ns~~NPiiY~~~ 308 (364)
T 2ks9_A 293 LAMSSTMYNPIIYCCL 308 (364)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4568999999999864
Done!