Query 045643
Match_columns 179
No_of_seqs 114 out of 1110
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 06:34:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045643.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045643hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 23.5 20 0.0015 19.8 1.8 12 59-70 17-28 (37)
2 d1q90a3 f.23.23.1 (A:248-292) 15.9 20 0.0015 20.6 0.6 12 59-70 16-27 (45)
3 d1tyka_ g.3.6.2 (A:) GSmtx4 {C 11.1 46 0.0033 17.4 1.1 10 29-38 5-14 (34)
4 d2uubp1 d.27.1.1 (P:1-83) Ribo 6.3 98 0.0072 19.5 1.4 50 8-69 24-76 (83)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 5.6 2.4E+02 0.018 14.9 3.3 18 153-170 19-36 (37)
6 d1khva_ e.8.1.4 (A:) Viral RNA 5.6 2E+02 0.015 23.2 3.4 27 94-120 300-326 (497)
7 d2v5pc1 g.1.1.1 (C:6-63) Insul 5.3 1.3E+02 0.0095 17.8 1.4 13 57-69 6-18 (58)
8 d1wqji1 g.1.1.1 (I:2-63) Insul 5.2 1.3E+02 0.0095 18.0 1.4 13 57-69 7-19 (62)
9 d1nkzb_ f.3.1.1 (B:) Light-har 5.1 2.7E+02 0.02 15.1 2.7 17 101-117 20-36 (41)
10 d3cx5c2 f.21.1.2 (C:1-261) Mit 5.1 3E+02 0.022 20.5 4.0 22 156-177 89-110 (261)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=23.50 E-value=20 Score=19.77 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=9.4
Q ss_pred HHHHHHHHHhcC
Q 045643 59 FLDTLLIILSNS 70 (179)
Q Consensus 59 llDTvf~VLRKK 70 (179)
++--+++||+||
T Consensus 17 ~laQi~lVlKKK 28 (37)
T d1vf5c3 17 MLAQLMLILKKK 28 (37)
T ss_dssp HHHHHHHHHHTG
T ss_pred HHHHHHHHHHHH
Confidence 456789999994
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=15.89 E-value=20 Score=20.60 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcC
Q 045643 59 FLDTLLIILSNS 70 (179)
Q Consensus 59 llDTvf~VLRKK 70 (179)
++--+++||+||
T Consensus 16 ~laQi~LVLKKK 27 (45)
T d1q90a3 16 LLTQVLLVLKKK 27 (45)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 466789999994
No 3
>d1tyka_ g.3.6.2 (A:) GSmtx4 {Chilean rose tarantula (Grammostola spatulata) [TaxId: 432528]}
Probab=11.07 E-value=46 Score=17.44 Aligned_cols=10 Identities=10% Similarity=-0.250 Sum_probs=7.8
Q ss_pred CcccccCCCC
Q 045643 29 PLHPLFPPTI 38 (179)
Q Consensus 29 ~~~~C~p~~~ 38 (179)
-|+.|.|.|+
T Consensus 5 fwwkcnpndd 14 (34)
T d1tyka_ 5 FWWKCNPNDD 14 (34)
T ss_dssp SSSBCCTTTC
T ss_pred eeeecCCCCc
Confidence 3889999874
No 4
>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}
Probab=6.30 E-value=98 Score=19.45 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=31.9
Q ss_pred CCCcccccceeecCCCCCCCCCcccccCCCCCCCc---chhhHHHHHHHHHHHHHHHHHHHHHhc
Q 045643 8 SSLPRHGRWLHSLHHPPFTPPPLHPLFPPTISPSG---PLFFHAYIFYLSKIHEFLDTLLIILSN 69 (179)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~C~p~~~~~~~---~~~~~~~lfylSK~~EllDTvf~VLRK 69 (179)
|.-|||++.+..+ |+| +|..+.++. .... -.+.+++=.+.-|||--+|++
T Consensus 24 ~r~~rdGk~IE~l---G~Y-------nP~~~~~~~i~l~~eR--i~~Wl~~GAqpS~tV~~ll~~ 76 (83)
T d2uubp1 24 ARRKRDGKYIEKI---GYY-------DPRKTTPDWLKVDVER--ARYWLSVGAQPTDTARRLLRQ 76 (83)
T ss_dssp TTSCTTSCCSEEE---EEE-------CTTCCSSCCEEECHHH--HHHHHHHTCEECHHHHHHHHH
T ss_pred cCCCCCCcceeee---eEE-------CCCCCCCceEEECHHH--HHHHHHCCCCCCHHHHHHHHH
Confidence 4569999999888 666 221111111 1111 235588999999999888877
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.60 E-value=2.4e+02 Score=14.92 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 045643 153 FNVVFNASLLTLFVNFHS 170 (179)
Q Consensus 153 ~~~~~~~s~l~LF~~Fy~ 170 (179)
++.......-+||+++|-
T Consensus 19 ~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 19 LGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344455667789998874
No 6
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=5.56 E-value=2e+02 Score=23.22 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=19.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHH
Q 045643 94 QTKQSLFPIALVTNASVHVIMYGYYLL 120 (179)
Q Consensus 94 ~~~~~~~~~~~~~Ns~VHviMY~YY~l 120 (179)
.+.+|.+..-+++||++|.||..|=.+
T Consensus 300 gG~PSG~p~Tsi~NSi~N~i~i~~a~~ 326 (497)
T d1khva_ 300 RGLPSGMPFTSVINSICHWLLWSAAVY 326 (497)
T ss_dssp SCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceeehhhhHHHHHHHHHHHH
Confidence 344566677789999999987655333
No 7
>d2v5pc1 g.1.1.1 (C:6-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.26 E-value=1.3e+02 Score=17.80 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhc
Q 045643 57 HEFLDTLLIILSN 69 (179)
Q Consensus 57 ~EllDTvf~VLRK 69 (179)
-||+||+-||-.-
T Consensus 6 s~LVdaL~~VCg~ 18 (58)
T d2v5pc1 6 GELVDTLQFVCGD 18 (58)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcC
Confidence 3789999888755
No 8
>d1wqji1 g.1.1.1 (I:2-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.21 E-value=1.3e+02 Score=17.98 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhc
Q 045643 57 HEFLDTLLIILSN 69 (179)
Q Consensus 57 ~EllDTvf~VLRK 69 (179)
-||+||.-||-.-
T Consensus 7 s~LvdaL~~VCG~ 19 (62)
T d1wqji1 7 AELVDALQFVCGD 19 (62)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcc
Confidence 3899999999855
No 9
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=5.11 E-value=2.7e+02 Score=15.11 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 045643 101 PIALVTNASVHVIMYGY 117 (179)
Q Consensus 101 ~~~~~~Ns~VHviMY~Y 117 (179)
+++..+-.+.|.+.|.|
T Consensus 20 RvF~~iA~~AH~La~~~ 36 (41)
T d1nkzb_ 20 RVFLGLALVAHFLAFSA 36 (41)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45677888999998876
No 10
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.10 E-value=3e+02 Score=20.48 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhHhhcccCC
Q 045643 156 VFNASLLTLFVNFHSEDYAKKK 177 (179)
Q Consensus 156 ~~~~s~l~LF~~Fy~ksY~~k~ 177 (179)
.....++-++..+|..+|++++
T Consensus 89 ~~~~~~lH~~r~~~~gsy~~pr 110 (261)
T d3cx5c2 89 FFMVMFMHMAKGLYYGSYRSPR 110 (261)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHHHHHHHHHHHHhccccCcc
Confidence 3345667788899999998775
Done!